Query 008430
Match_columns 565
No_of_seqs 445 out of 3878
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 12:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 6.4E-67 1.4E-71 518.9 36.1 372 122-500 92-467 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 8.3E-66 1.8E-70 478.2 32.9 367 118-499 58-425 (476)
3 PTZ00110 helicase; Provisional 100.0 1.7E-63 3.7E-68 522.8 47.5 409 79-498 91-501 (545)
4 KOG0333 U5 snRNP-like RNA heli 100.0 2.8E-63 6.1E-68 477.0 31.3 409 85-507 213-651 (673)
5 PLN00206 DEAD-box ATP-dependen 100.0 4.5E-61 9.8E-66 503.4 47.5 404 81-497 84-491 (518)
6 KOG0341 DEAD-box protein abstr 100.0 1.6E-63 3.5E-68 461.6 18.4 421 65-499 118-547 (610)
7 COG0513 SrmB Superfamily II DN 100.0 2.4E-60 5.3E-65 494.0 43.0 364 121-496 29-396 (513)
8 KOG0336 ATP-dependent RNA heli 100.0 1.8E-61 3.9E-66 451.0 29.4 412 79-500 174-591 (629)
9 PRK04837 ATP-dependent RNA hel 100.0 1.1E-59 2.3E-64 484.7 44.9 367 120-496 7-377 (423)
10 KOG0328 Predicted ATP-dependen 100.0 3.8E-61 8.2E-66 428.4 27.8 365 117-496 23-388 (400)
11 PRK10590 ATP-dependent RNA hel 100.0 3.5E-59 7.6E-64 483.7 42.6 365 122-496 2-367 (456)
12 PRK11776 ATP-dependent RNA hel 100.0 1.3E-58 2.9E-63 481.8 43.3 360 121-495 4-363 (460)
13 PRK11634 ATP-dependent RNA hel 100.0 1.7E-58 3.6E-63 488.7 44.4 361 120-494 5-365 (629)
14 PRK04537 ATP-dependent RNA hel 100.0 2.8E-58 6E-63 484.8 42.5 366 120-495 8-378 (572)
15 KOG0338 ATP-dependent RNA heli 100.0 7.4E-60 1.6E-64 451.8 25.7 362 120-492 180-544 (691)
16 KOG0342 ATP-dependent RNA heli 100.0 8.1E-59 1.8E-63 444.5 32.1 364 120-492 81-448 (543)
17 PRK11192 ATP-dependent RNA hel 100.0 2.1E-57 4.5E-62 470.1 44.3 364 122-496 2-367 (434)
18 KOG0340 ATP-dependent RNA heli 100.0 1.9E-58 4.2E-63 424.1 29.1 366 119-496 5-376 (442)
19 KOG0339 ATP-dependent RNA heli 100.0 1.4E-57 3E-62 435.6 35.6 415 80-507 186-601 (731)
20 KOG0335 ATP-dependent RNA heli 100.0 8.1E-58 1.8E-62 445.8 30.0 387 111-498 64-461 (482)
21 PRK01297 ATP-dependent RNA hel 100.0 3.2E-56 7E-61 464.9 43.8 369 118-496 84-457 (475)
22 KOG0345 ATP-dependent RNA heli 100.0 1.5E-56 3.3E-61 425.8 34.9 359 122-489 5-372 (567)
23 KOG0326 ATP-dependent RNA heli 100.0 2.5E-58 5.5E-63 417.1 18.2 359 121-495 85-443 (459)
24 PTZ00424 helicase 45; Provisio 100.0 3.5E-55 7.6E-60 450.5 42.9 360 120-494 27-387 (401)
25 KOG0343 RNA Helicase [RNA proc 100.0 2.1E-56 4.5E-61 431.9 30.8 380 92-492 49-434 (758)
26 KOG0348 ATP-dependent RNA heli 100.0 1.7E-56 3.7E-61 431.0 28.9 372 117-493 132-566 (708)
27 KOG0334 RNA helicase [RNA proc 100.0 1.5E-55 3.2E-60 459.0 34.3 448 80-545 327-779 (997)
28 KOG0347 RNA helicase [RNA proc 100.0 2.7E-55 5.9E-60 424.0 22.9 388 116-521 176-610 (731)
29 KOG0346 RNA helicase [RNA proc 100.0 2.1E-53 4.6E-58 400.8 32.3 367 121-495 19-424 (569)
30 TIGR03817 DECH_helic helicase/ 100.0 6.7E-50 1.5E-54 431.5 40.3 349 127-494 20-401 (742)
31 KOG0332 ATP-dependent RNA heli 100.0 1.7E-49 3.6E-54 367.3 28.5 361 117-495 86-458 (477)
32 KOG0327 Translation initiation 100.0 1.1E-49 2.3E-54 372.2 25.7 357 120-493 25-382 (397)
33 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-48 3E-53 405.7 33.6 325 137-490 5-342 (470)
34 KOG4284 DEAD box protein [Tran 100.0 1.2E-49 2.5E-54 391.0 23.8 358 117-482 21-380 (980)
35 KOG0337 ATP-dependent RNA heli 100.0 1.5E-49 3.3E-54 373.0 23.1 360 120-492 20-379 (529)
36 PLN03137 ATP-dependent DNA hel 100.0 3.9E-48 8.5E-53 413.9 36.8 337 126-489 442-795 (1195)
37 KOG0350 DEAD-box ATP-dependent 100.0 1E-48 2.3E-53 374.8 27.2 365 117-495 123-554 (620)
38 PRK11057 ATP-dependent DNA hel 100.0 1.6E-46 3.4E-51 400.1 35.8 326 133-489 14-351 (607)
39 KOG0344 ATP-dependent RNA heli 100.0 6.9E-47 1.5E-51 371.3 28.1 379 113-503 124-515 (593)
40 TIGR01389 recQ ATP-dependent D 100.0 1.3E-45 2.9E-50 394.6 33.2 321 138-489 8-339 (591)
41 PRK13767 ATP-dependent helicas 100.0 1.3E-44 2.9E-49 398.2 37.4 344 128-481 18-398 (876)
42 PRK02362 ski2-like helicase; P 100.0 1.8E-45 4E-50 401.9 29.7 338 122-482 2-398 (737)
43 PRK00254 ski2-like helicase; P 100.0 4.7E-44 1E-48 389.9 33.1 337 122-482 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 1.6E-42 3.5E-47 377.1 38.6 321 128-481 436-770 (926)
45 PRK10689 transcription-repair 100.0 1.4E-41 3.1E-46 377.6 38.3 315 134-481 592-919 (1147)
46 COG1201 Lhr Lhr-like helicases 100.0 1.3E-41 2.8E-46 357.3 34.0 342 128-481 8-362 (814)
47 PRK01172 ski2-like helicase; P 100.0 3.8E-42 8.2E-47 373.5 30.9 335 122-482 2-379 (674)
48 COG0514 RecQ Superfamily II DN 100.0 2.4E-42 5.2E-47 350.2 26.7 327 138-492 12-348 (590)
49 PRK10917 ATP-dependent DNA hel 100.0 2.9E-41 6.2E-46 363.4 36.7 320 130-481 248-589 (681)
50 TIGR00643 recG ATP-dependent D 100.0 7.9E-41 1.7E-45 357.9 36.9 317 133-480 226-565 (630)
51 COG1111 MPH1 ERCC4-like helica 100.0 7.8E-41 1.7E-45 323.7 32.2 326 141-482 13-482 (542)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.3E-41 7.1E-46 356.3 32.0 320 139-478 12-388 (844)
53 COG1202 Superfamily II helicas 100.0 1.6E-40 3.4E-45 323.5 22.8 343 122-481 195-553 (830)
54 PHA02558 uvsW UvsW helicase; P 100.0 7.3E-40 1.6E-44 342.0 27.3 309 141-479 112-450 (501)
55 PRK09751 putative ATP-dependen 100.0 6E-39 1.3E-43 358.0 34.2 310 163-479 1-383 (1490)
56 KOG0329 ATP-dependent RNA heli 100.0 9.1E-41 2E-45 293.9 14.0 320 121-489 42-364 (387)
57 PRK09401 reverse gyrase; Revie 100.0 8.5E-38 1.8E-42 348.3 39.4 283 139-453 77-410 (1176)
58 PHA02653 RNA helicase NPH-II; 100.0 3.1E-38 6.6E-43 332.5 30.0 321 146-490 167-523 (675)
59 PRK05580 primosome assembly pr 100.0 2.3E-37 5.1E-42 331.6 33.2 381 142-552 143-642 (679)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.9E-37 6.3E-42 332.9 33.7 311 148-486 7-341 (819)
61 PRK14701 reverse gyrase; Provi 100.0 3.1E-37 6.7E-42 350.6 32.3 330 131-489 67-464 (1638)
62 PRK11664 ATP-dependent RNA hel 100.0 7.2E-37 1.6E-41 330.7 31.7 309 149-485 11-343 (812)
63 PRK12898 secA preprotein trans 100.0 4E-36 8.7E-41 311.2 33.2 320 142-485 102-590 (656)
64 COG1204 Superfamily II helicas 100.0 4.9E-37 1.1E-41 327.7 26.9 333 128-481 16-408 (766)
65 TIGR01054 rgy reverse gyrase. 100.0 2E-35 4.3E-40 329.9 38.9 290 132-452 67-408 (1171)
66 KOG0354 DEAD-box like helicase 100.0 6.2E-37 1.3E-41 314.1 24.6 337 128-481 47-529 (746)
67 PRK13766 Hef nuclease; Provisi 100.0 8.6E-36 1.9E-40 330.1 35.5 326 142-483 14-481 (773)
68 TIGR00595 priA primosomal prot 100.0 1.9E-36 4.2E-41 313.2 26.2 361 162-553 1-474 (505)
69 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-36 2.9E-41 307.5 22.6 300 160-482 1-337 (358)
70 PRK09200 preprotein translocas 100.0 3.3E-35 7.2E-40 310.9 33.9 321 139-485 75-545 (790)
71 COG1205 Distinct helicase fami 100.0 9.4E-36 2E-40 322.4 29.5 338 130-481 57-422 (851)
72 TIGR00603 rad25 DNA repair hel 100.0 7E-36 1.5E-40 312.9 26.5 318 142-494 254-622 (732)
73 KOG0352 ATP-dependent DNA heli 100.0 1.5E-36 3.3E-41 285.7 19.0 341 132-490 7-371 (641)
74 TIGR00963 secA preprotein tran 100.0 9.3E-35 2E-39 302.4 33.0 320 142-485 55-521 (745)
75 TIGR03714 secA2 accessory Sec 100.0 1.5E-34 3.2E-39 302.9 34.6 320 143-485 70-541 (762)
76 COG1061 SSL2 DNA or RNA helica 100.0 5.2E-36 1.1E-40 306.6 22.6 299 142-467 35-375 (442)
77 KOG0351 ATP-dependent DNA heli 100.0 1.5E-35 3.3E-40 318.0 26.0 327 137-489 258-600 (941)
78 KOG0349 Putative DEAD-box RNA 100.0 9.4E-36 2E-40 280.7 18.8 295 196-490 288-624 (725)
79 TIGR03158 cas3_cyano CRISPR-as 100.0 3.6E-34 7.7E-39 286.2 30.6 297 147-466 1-357 (357)
80 COG1198 PriA Primosomal protei 100.0 4.6E-34 1E-38 298.6 24.7 389 142-552 197-695 (730)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 8E-34 1.7E-38 294.2 24.4 344 136-489 103-499 (1230)
82 COG1200 RecG RecG-like helicas 100.0 1.4E-32 3E-37 278.1 31.3 339 130-500 249-610 (677)
83 KOG0353 ATP-dependent DNA heli 100.0 1.4E-33 3.1E-38 262.0 21.7 340 124-486 74-472 (695)
84 PRK04914 ATP-dependent helicas 100.0 2.5E-32 5.4E-37 296.3 31.7 333 142-495 151-617 (956)
85 PRK11131 ATP-dependent RNA hel 100.0 1.9E-31 4.1E-36 293.1 30.7 307 145-485 76-415 (1294)
86 PRK11448 hsdR type I restricti 100.0 1.6E-31 3.5E-36 296.5 25.2 316 142-479 412-813 (1123)
87 KOG0947 Cytoplasmic exosomal R 100.0 5.1E-31 1.1E-35 270.4 21.6 312 143-481 297-723 (1248)
88 PRK13104 secA preprotein trans 100.0 4.2E-29 9.1E-34 263.8 33.4 319 142-485 81-591 (896)
89 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.1E-30 1.5E-34 281.8 28.1 307 149-485 73-408 (1283)
90 KOG0948 Nuclear exosomal RNA h 100.0 2.2E-30 4.8E-35 259.5 21.5 324 143-488 129-547 (1041)
91 KOG0951 RNA helicase BRR2, DEA 100.0 5E-30 1.1E-34 269.3 24.7 343 138-489 304-710 (1674)
92 cd00268 DEADc DEAD-box helicas 100.0 1.9E-29 4.2E-34 234.1 26.1 202 123-328 1-202 (203)
93 COG1197 Mfd Transcription-repa 100.0 1.2E-28 2.5E-33 263.3 34.2 319 130-481 581-913 (1139)
94 PRK12904 preprotein translocas 100.0 2.1E-28 4.6E-33 258.4 33.1 319 142-485 80-577 (830)
95 COG4098 comFA Superfamily II D 100.0 1.9E-28 4.1E-33 225.7 28.5 307 143-485 97-420 (441)
96 COG4581 Superfamily II RNA hel 100.0 2.4E-29 5.3E-34 268.4 23.3 323 139-479 116-535 (1041)
97 PLN03142 Probable chromatin-re 100.0 7.7E-29 1.7E-33 269.9 27.4 315 143-478 169-594 (1033)
98 PRK12906 secA preprotein trans 100.0 3.6E-28 7.8E-33 255.6 28.6 319 142-485 79-557 (796)
99 PRK09694 helicase Cas3; Provis 100.0 2.9E-28 6.4E-33 263.1 28.5 313 141-470 284-664 (878)
100 PRK12899 secA preprotein trans 100.0 4.4E-27 9.5E-32 247.9 33.0 148 124-282 65-228 (970)
101 COG4096 HsdR Type I site-speci 100.0 2.9E-28 6.2E-33 249.8 20.6 316 142-482 164-546 (875)
102 PRK13107 preprotein translocas 100.0 1.1E-26 2.4E-31 244.6 30.2 318 143-485 82-595 (908)
103 KOG0950 DNA polymerase theta/e 100.0 4.3E-27 9.3E-32 243.6 21.5 336 135-489 215-619 (1008)
104 KOG0385 Chromatin remodeling c 99.9 2.7E-26 6E-31 231.3 24.7 316 143-482 167-598 (971)
105 PF00270 DEAD: DEAD/DEAH box h 99.9 3E-25 6.5E-30 199.8 20.2 164 145-315 1-167 (169)
106 TIGR00348 hsdR type I site-spe 99.9 1.4E-24 2.9E-29 233.2 27.8 304 143-468 238-634 (667)
107 COG1643 HrpA HrpA-like helicas 99.9 9.9E-24 2.1E-28 224.6 27.9 314 145-484 52-390 (845)
108 COG1110 Reverse gyrase [DNA re 99.9 8.4E-23 1.8E-27 213.0 30.3 285 136-452 75-416 (1187)
109 PRK12900 secA preprotein trans 99.9 2.8E-23 6E-28 219.9 26.3 131 346-485 577-715 (1025)
110 KOG0384 Chromodomain-helicase 99.9 1E-24 2.2E-29 230.3 15.0 380 80-481 314-811 (1373)
111 KOG0922 DEAH-box RNA helicase 99.9 7E-23 1.5E-27 205.8 25.4 314 145-485 53-394 (674)
112 KOG0387 Transcription-coupled 99.9 1.1E-22 2.3E-27 206.6 25.1 327 143-490 205-670 (923)
113 COG1203 CRISPR-associated heli 99.9 5.4E-23 1.2E-27 223.2 20.7 331 143-488 195-557 (733)
114 TIGR00631 uvrb excinuclease AB 99.9 1E-21 2.2E-26 208.5 28.7 134 350-491 425-563 (655)
115 PRK12326 preprotein translocas 99.9 1.2E-21 2.7E-26 201.9 27.4 319 142-485 77-551 (764)
116 KOG0949 Predicted helicase, DE 99.9 1.2E-22 2.5E-27 209.7 19.2 160 143-312 511-673 (1330)
117 COG0556 UvrB Helicase subunit 99.9 7.7E-22 1.7E-26 192.5 23.7 168 300-482 386-558 (663)
118 KOG1000 Chromatin remodeling p 99.9 4.6E-22 9.9E-27 191.7 21.1 317 142-479 197-599 (689)
119 KOG0390 DNA repair protein, SN 99.9 2E-21 4.3E-26 202.7 26.3 323 143-479 238-703 (776)
120 PRK13103 secA preprotein trans 99.9 9.1E-21 2E-25 200.4 28.0 319 142-485 81-595 (913)
121 COG4889 Predicted helicase [Ge 99.9 8E-23 1.7E-27 208.4 10.1 365 121-498 140-618 (1518)
122 KOG0920 ATP-dependent RNA heli 99.9 4.4E-21 9.4E-26 203.5 23.3 320 143-483 173-546 (924)
123 KOG0392 SNF2 family DNA-depend 99.9 1.9E-21 4E-26 205.1 19.3 326 143-477 975-1448(1549)
124 KOG0923 mRNA splicing factor A 99.9 5.9E-21 1.3E-25 190.0 21.5 317 140-481 262-606 (902)
125 KOG0389 SNF2 family DNA-depend 99.9 9.7E-21 2.1E-25 192.3 21.7 316 143-478 399-883 (941)
126 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-19 2.8E-24 201.2 32.5 347 130-494 233-829 (850)
127 KOG0924 mRNA splicing factor A 99.9 1.6E-20 3.4E-25 187.4 21.9 311 145-481 358-697 (1042)
128 PRK05298 excinuclease ABC subu 99.9 6.6E-20 1.4E-24 196.4 27.8 125 351-483 430-559 (652)
129 smart00487 DEXDc DEAD-like hel 99.9 9E-20 1.9E-24 168.6 22.3 186 139-331 4-191 (201)
130 PRK12903 secA preprotein trans 99.9 5E-19 1.1E-23 185.2 29.5 318 142-485 77-543 (925)
131 PRK14873 primosome assembly pr 99.8 3.9E-20 8.5E-25 195.8 17.5 304 162-505 164-571 (665)
132 KOG0926 DEAH-box RNA helicase 99.8 1.2E-18 2.6E-23 177.0 26.8 310 149-481 262-704 (1172)
133 KOG0925 mRNA splicing factor A 99.8 5.3E-19 1.2E-23 170.4 22.2 332 118-481 22-387 (699)
134 CHL00122 secA preprotein trans 99.8 4.5E-18 9.8E-23 179.4 29.7 272 143-440 76-490 (870)
135 KOG1123 RNA polymerase II tran 99.8 2.4E-20 5.3E-25 180.1 10.1 307 142-482 301-654 (776)
136 PRK12902 secA preprotein trans 99.8 1.6E-17 3.5E-22 174.7 29.5 128 142-282 84-218 (939)
137 PRK07246 bifunctional ATP-depe 99.8 4E-17 8.6E-22 178.7 31.9 331 143-495 245-799 (820)
138 KOG0388 SNF2 family DNA-depend 99.8 4.4E-18 9.6E-23 170.5 17.8 106 372-477 1042-1148(1185)
139 KOG0391 SNF2 family DNA-depend 99.8 1.1E-17 2.4E-22 175.3 21.3 126 351-483 1260-1387(1958)
140 KOG4150 Predicted ATP-dependen 99.8 1.7E-18 3.6E-23 169.7 13.7 341 136-492 279-653 (1034)
141 cd00079 HELICc Helicase superf 99.8 6E-18 1.3E-22 145.1 13.1 120 351-477 12-131 (131)
142 KOG0953 Mitochondrial RNA heli 99.8 7E-18 1.5E-22 165.5 14.8 268 161-481 194-477 (700)
143 PRK08074 bifunctional ATP-depe 99.8 4.2E-16 9E-21 173.9 30.6 119 375-493 753-907 (928)
144 PF04851 ResIII: Type III rest 99.7 9.3E-18 2E-22 153.1 12.2 153 143-312 3-184 (184)
145 cd00046 DEXDc DEAD-like helica 99.7 9.3E-17 2E-21 139.6 17.8 144 159-310 1-144 (144)
146 KOG0386 Chromatin remodeling c 99.7 8.9E-18 1.9E-22 175.0 12.9 319 142-481 393-836 (1157)
147 PF00271 Helicase_C: Helicase 99.7 3.2E-18 7E-23 132.0 6.2 78 392-469 1-78 (78)
148 KOG1002 Nucleotide excision re 99.7 1.1E-16 2.3E-21 154.9 16.9 108 375-482 639-750 (791)
149 TIGR03117 cas_csf4 CRISPR-asso 99.7 4.8E-15 1E-19 155.2 30.3 105 375-481 471-616 (636)
150 PRK12901 secA preprotein trans 99.7 2E-15 4.2E-20 160.8 25.3 132 345-485 606-745 (1112)
151 KOG0951 RNA helicase BRR2, DEA 99.7 1E-15 2.2E-20 162.6 20.0 319 144-489 1144-1502(1674)
152 KOG4439 RNA polymerase II tran 99.6 5.3E-15 1.1E-19 149.1 17.2 114 376-489 748-864 (901)
153 PRK11747 dinG ATP-dependent DN 99.6 2.4E-13 5.1E-18 147.3 30.6 114 376-493 536-688 (697)
154 COG1199 DinG Rad3-related DNA 99.6 3.9E-14 8.4E-19 154.7 24.8 116 376-494 481-632 (654)
155 smart00490 HELICc helicase sup 99.6 1.5E-15 3.2E-20 118.5 7.0 81 389-469 2-82 (82)
156 TIGR00604 rad3 DNA repair heli 99.6 1E-12 2.3E-17 143.5 27.6 73 140-217 7-83 (705)
157 TIGR02562 cas3_yersinia CRISPR 99.6 2.7E-13 5.8E-18 145.5 20.8 339 134-485 399-898 (1110)
158 COG0553 HepA Superfamily II DN 99.5 3.8E-13 8.3E-18 152.9 20.9 324 142-482 337-821 (866)
159 KOG1015 Transcription regulato 99.5 3.5E-12 7.5E-17 132.5 22.4 107 375-481 1143-1275(1567)
160 COG0610 Type I site-specific r 99.5 1.1E-11 2.3E-16 138.0 25.1 304 159-479 274-651 (962)
161 COG0653 SecA Preprotein transl 99.4 1.7E-11 3.7E-16 129.5 22.4 317 143-483 80-547 (822)
162 PF02399 Herpes_ori_bp: Origin 99.4 3.7E-12 8E-17 133.5 17.1 289 160-481 51-388 (824)
163 PF06862 DUF1253: Protein of u 99.4 1.6E-10 3.5E-15 115.5 25.8 292 193-489 36-423 (442)
164 PF00176 SNF2_N: SNF2 family N 99.4 3.9E-12 8.4E-17 125.7 12.8 156 147-312 1-174 (299)
165 PF07652 Flavi_DEAD: Flaviviru 99.3 2.6E-12 5.7E-17 106.7 7.6 136 157-314 3-140 (148)
166 PRK15483 type III restriction- 99.3 1.5E-09 3.3E-14 117.5 28.0 73 424-496 501-583 (986)
167 KOG2340 Uncharacterized conser 99.2 1.3E-09 2.9E-14 107.4 16.4 344 140-489 213-676 (698)
168 KOG1016 Predicted DNA helicase 99.1 5.8E-09 1.2E-13 106.9 20.4 117 374-490 719-856 (1387)
169 smart00489 DEXDc3 DEAD-like he 99.1 7.3E-10 1.6E-14 107.4 13.5 73 143-217 8-84 (289)
170 smart00488 DEXDc2 DEAD-like he 99.1 7.3E-10 1.6E-14 107.4 13.5 73 143-217 8-84 (289)
171 PF07517 SecA_DEAD: SecA DEAD- 99.1 3.8E-09 8.3E-14 99.4 16.9 129 141-282 75-210 (266)
172 COG3587 Restriction endonuclea 99.1 9.5E-09 2.1E-13 107.2 20.7 75 423-497 482-569 (985)
173 TIGR00596 rad1 DNA repair prot 98.9 2.7E-08 5.8E-13 108.1 17.2 69 243-311 5-73 (814)
174 KOG0921 Dosage compensation co 98.8 4.2E-08 9E-13 102.5 12.2 316 146-480 381-773 (1282)
175 KOG0952 DNA/RNA helicase MER3/ 98.7 4.8E-09 1E-13 111.4 0.7 267 143-426 927-1207(1230)
176 KOG1001 Helicase-like transcri 98.6 6.7E-08 1.5E-12 102.7 8.4 102 375-476 540-643 (674)
177 PF13604 AAA_30: AAA domain; P 98.6 1.8E-07 3.8E-12 85.6 9.6 123 143-309 1-130 (196)
178 PF02562 PhoH: PhoH-like prote 98.6 3.1E-07 6.7E-12 83.1 9.1 142 142-309 3-155 (205)
179 PF13872 AAA_34: P-loop contai 98.5 1.5E-06 3.3E-11 82.2 13.3 169 125-313 25-223 (303)
180 COG3421 Uncharacterized protei 98.5 1.1E-06 2.4E-11 88.6 12.6 142 163-311 2-166 (812)
181 PF13086 AAA_11: AAA domain; P 98.5 9.9E-07 2.2E-11 83.5 10.7 73 143-216 1-75 (236)
182 PF13307 Helicase_C_2: Helicas 98.4 7.7E-07 1.7E-11 79.1 7.7 105 375-481 10-150 (167)
183 KOG1802 RNA helicase nonsense 98.4 5.9E-06 1.3E-10 84.3 14.3 84 135-230 402-485 (935)
184 PRK10536 hypothetical protein; 98.3 1.8E-05 3.9E-10 73.7 14.1 147 138-306 54-209 (262)
185 KOG1803 DNA helicase [Replicat 98.3 2.5E-06 5.5E-11 86.5 9.0 65 142-214 184-249 (649)
186 PRK10875 recD exonuclease V su 98.2 1.7E-05 3.6E-10 84.5 13.3 142 145-309 154-301 (615)
187 PF09848 DUF2075: Uncharacteri 98.2 7.7E-06 1.7E-10 82.3 10.3 107 161-296 4-117 (352)
188 TIGR01447 recD exodeoxyribonuc 98.2 2.3E-05 4.9E-10 83.3 13.7 143 145-309 147-295 (586)
189 TIGR00376 DNA helicase, putati 98.2 2E-05 4.3E-10 84.9 13.2 67 142-216 156-223 (637)
190 TIGR01448 recD_rel helicase, p 98.1 3.1E-05 6.7E-10 84.7 13.1 127 141-309 321-452 (720)
191 PF12340 DUF3638: Protein of u 98.1 8.7E-05 1.9E-09 67.9 13.0 127 123-259 5-144 (229)
192 COG1875 NYN ribonuclease and A 97.9 2.8E-05 6.2E-10 74.5 7.8 144 139-307 224-385 (436)
193 PRK13889 conjugal transfer rel 97.9 0.00011 2.4E-09 81.9 12.6 124 142-309 345-470 (988)
194 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00016 3.4E-09 79.6 12.7 122 142-307 351-474 (744)
195 PF13245 AAA_19: Part of AAA d 97.8 7.2E-05 1.6E-09 56.4 7.0 60 151-214 2-62 (76)
196 KOG1132 Helicase of the DEAD s 97.8 0.00014 3E-09 77.3 10.6 136 143-282 21-260 (945)
197 KOG1805 DNA replication helica 97.7 0.00015 3.3E-09 77.7 10.1 124 142-282 668-809 (1100)
198 PRK13826 Dtr system oriT relax 97.7 0.00055 1.2E-08 77.0 14.1 124 142-309 380-505 (1102)
199 smart00492 HELICc3 helicase su 97.7 0.00015 3.2E-09 62.1 7.4 76 405-480 28-137 (141)
200 PF13401 AAA_22: AAA domain; P 97.6 0.0016 3.6E-08 55.1 13.0 122 158-310 4-125 (131)
201 KOG0383 Predicted helicase [Ge 97.6 3.6E-06 7.7E-11 88.7 -4.4 64 373-437 630-696 (696)
202 smart00491 HELICc2 helicase su 97.6 0.00029 6.2E-09 60.4 7.9 70 411-480 31-138 (142)
203 PRK06526 transposase; Provisio 97.5 0.00032 7E-09 66.6 7.6 42 153-202 93-134 (254)
204 PRK04296 thymidine kinase; Pro 97.5 0.00022 4.7E-09 64.9 6.0 35 160-202 4-38 (190)
205 PRK08181 transposase; Validate 97.5 0.0013 2.9E-08 62.8 11.4 58 144-210 88-149 (269)
206 PF05970 PIF1: PIF1-like helic 97.4 0.00063 1.4E-08 68.7 8.9 68 143-218 1-76 (364)
207 cd00009 AAA The AAA+ (ATPases 97.4 0.0021 4.6E-08 55.3 11.1 18 158-175 19-36 (151)
208 PF00580 UvrD-helicase: UvrD/R 97.4 0.00061 1.3E-08 67.6 8.3 123 144-279 1-125 (315)
209 TIGR02760 TraI_TIGR conjugativ 97.3 0.018 3.9E-07 70.0 21.6 135 143-309 429-566 (1960)
210 PF00448 SRP54: SRP54-type pro 97.2 0.0033 7.1E-08 57.3 9.9 130 161-321 4-136 (196)
211 PRK14974 cell division protein 97.1 0.0067 1.4E-07 59.9 12.2 53 269-321 222-275 (336)
212 smart00382 AAA ATPases associa 97.0 0.0012 2.6E-08 56.5 5.9 43 158-208 2-44 (148)
213 PRK12723 flagellar biosynthesi 97.0 0.0098 2.1E-07 59.9 12.9 158 159-362 175-337 (388)
214 KOG0298 DEAD box-containing he 97.0 0.0023 5E-08 70.8 8.8 152 157-314 373-554 (1394)
215 KOG0989 Replication factor C, 97.0 0.0053 1.1E-07 58.0 9.9 46 265-311 125-170 (346)
216 PRK05707 DNA polymerase III su 97.0 0.0064 1.4E-07 60.1 10.7 42 143-185 3-48 (328)
217 PHA02533 17 large terminase pr 96.9 0.0079 1.7E-07 63.4 11.8 149 143-310 59-210 (534)
218 PRK07952 DNA replication prote 96.9 0.014 3E-07 55.0 12.2 34 159-200 100-133 (244)
219 TIGR01075 uvrD DNA helicase II 96.9 0.0054 1.2E-07 68.0 11.0 109 142-280 3-114 (715)
220 PTZ00112 origin recognition co 96.9 0.017 3.7E-07 62.8 13.8 23 161-184 784-806 (1164)
221 PRK11773 uvrD DNA-dependent he 96.9 0.0053 1.2E-07 68.0 10.7 109 142-280 8-119 (721)
222 PRK06921 hypothetical protein; 96.9 0.011 2.3E-07 56.8 11.3 44 158-209 117-160 (266)
223 PRK12377 putative replication 96.9 0.012 2.6E-07 55.5 11.4 46 159-213 102-147 (248)
224 PRK08116 hypothetical protein; 96.9 0.014 2.9E-07 56.2 12.0 44 160-212 116-159 (268)
225 PRK10919 ATP-dependent DNA hel 96.9 0.0041 8.9E-08 68.1 9.4 71 143-219 2-72 (672)
226 PRK08727 hypothetical protein; 96.8 0.0062 1.3E-07 57.4 9.0 34 160-201 43-76 (233)
227 PRK08769 DNA polymerase III su 96.8 0.021 4.5E-07 56.0 12.8 143 142-310 3-153 (319)
228 PRK14722 flhF flagellar biosyn 96.8 0.014 3E-07 58.3 11.7 168 158-363 137-307 (374)
229 PRK14712 conjugal transfer nic 96.8 0.011 2.5E-07 69.0 12.5 65 142-210 834-900 (1623)
230 PRK05642 DNA replication initi 96.8 0.0093 2E-07 56.2 9.7 43 269-311 97-140 (234)
231 PRK05703 flhF flagellar biosyn 96.7 0.026 5.7E-07 57.9 13.4 128 158-321 221-354 (424)
232 COG1484 DnaC DNA replication p 96.7 0.0092 2E-07 56.8 9.3 50 157-215 104-153 (254)
233 COG2805 PilT Tfp pilus assembl 96.7 0.0096 2.1E-07 56.2 8.9 77 89-186 55-152 (353)
234 PRK11889 flhF flagellar biosyn 96.6 0.028 6.1E-07 56.0 12.3 155 159-362 242-402 (436)
235 PRK11054 helD DNA helicase IV; 96.6 0.018 3.8E-07 62.8 11.9 109 140-279 193-302 (684)
236 PF13871 Helicase_C_4: Helicas 96.6 0.0039 8.5E-08 59.1 5.9 79 415-493 52-142 (278)
237 PRK13709 conjugal transfer nic 96.6 0.017 3.8E-07 68.4 12.4 127 142-309 966-1099(1747)
238 KOG0701 dsRNA-specific nucleas 96.6 0.0013 2.7E-08 75.8 3.0 93 377-469 295-399 (1606)
239 COG1419 FlhF Flagellar GTP-bin 96.6 0.064 1.4E-06 53.4 14.1 158 158-362 203-363 (407)
240 PF13177 DNA_pol3_delta2: DNA 96.6 0.025 5.5E-07 49.8 10.4 43 268-311 101-143 (162)
241 TIGR02785 addA_Gpos recombinat 96.5 0.021 4.5E-07 67.0 12.6 123 144-280 2-126 (1232)
242 cd01120 RecA-like_NTPases RecA 96.5 0.033 7.2E-07 48.9 11.3 39 161-207 2-40 (165)
243 PF14617 CMS1: U3-containing 9 96.5 0.0076 1.6E-07 56.5 7.0 86 193-280 125-212 (252)
244 COG2256 MGS1 ATPase related to 96.5 0.016 3.4E-07 57.1 9.2 35 271-310 106-140 (436)
245 PRK06964 DNA polymerase III su 96.5 0.023 5.1E-07 56.2 10.7 42 144-186 2-48 (342)
246 cd01124 KaiC KaiC is a circadi 96.5 0.03 6.5E-07 50.7 10.9 48 161-217 2-49 (187)
247 PRK08084 DNA replication initi 96.5 0.021 4.6E-07 53.8 10.1 36 159-202 46-81 (235)
248 PRK06893 DNA replication initi 96.4 0.012 2.6E-07 55.3 8.1 44 269-312 91-136 (229)
249 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.027 5.9E-07 52.8 10.4 19 157-175 37-55 (226)
250 PHA00729 NTP-binding motif con 96.4 0.025 5.5E-07 52.1 9.5 73 247-320 60-138 (226)
251 PRK06835 DNA replication prote 96.3 0.034 7.3E-07 55.0 10.8 45 157-210 182-226 (329)
252 PHA02544 44 clamp loader, smal 96.3 0.039 8.5E-07 54.7 11.3 39 269-307 100-138 (316)
253 PRK00149 dnaA chromosomal repl 96.3 0.064 1.4E-06 56.0 13.2 45 159-210 149-193 (450)
254 PLN03025 replication factor C 96.3 0.044 9.5E-07 54.4 11.4 40 269-310 99-138 (319)
255 TIGR01073 pcrA ATP-dependent D 96.3 0.02 4.3E-07 63.8 9.8 109 142-280 3-114 (726)
256 PRK12422 chromosomal replicati 96.3 0.022 4.8E-07 58.8 9.5 108 159-316 142-251 (445)
257 PRK12323 DNA polymerase III su 96.2 0.043 9.2E-07 58.3 11.4 42 268-310 123-164 (700)
258 PF03354 Terminase_1: Phage Te 96.2 0.012 2.7E-07 61.8 7.6 73 146-222 1-82 (477)
259 PRK14958 DNA polymerase III su 96.2 0.052 1.1E-06 57.2 12.1 39 268-307 118-156 (509)
260 PF05621 TniB: Bacterial TniB 96.2 0.023 5E-07 54.4 8.5 120 159-310 62-189 (302)
261 PRK06871 DNA polymerase III su 96.2 0.055 1.2E-06 53.2 11.3 42 144-186 3-51 (325)
262 PRK07003 DNA polymerase III su 96.2 0.051 1.1E-06 58.6 11.7 40 268-309 118-157 (830)
263 TIGR02760 TraI_TIGR conjugativ 96.1 0.038 8.3E-07 67.3 11.8 63 142-210 1018-1084(1960)
264 PF13173 AAA_14: AAA domain 96.1 0.06 1.3E-06 45.3 9.9 38 269-310 61-98 (128)
265 PRK12727 flagellar biosynthesi 96.1 0.14 3E-06 53.3 14.0 20 157-176 349-368 (559)
266 PF00004 AAA: ATPase family as 96.1 0.074 1.6E-06 44.8 10.5 15 161-175 1-15 (132)
267 PRK13342 recombination factor 96.0 0.079 1.7E-06 54.6 12.3 37 269-310 92-128 (413)
268 PRK08903 DnaA regulatory inact 96.0 0.069 1.5E-06 50.1 11.0 42 269-311 90-132 (227)
269 PRK14087 dnaA chromosomal repl 96.0 0.048 1E-06 56.6 10.5 49 160-215 143-191 (450)
270 KOG1133 Helicase of the DEAD s 96.0 0.28 6.1E-06 51.6 15.6 103 376-481 631-780 (821)
271 PF00308 Bac_DnaA: Bacterial d 96.0 0.036 7.7E-07 51.6 8.7 107 160-314 36-144 (219)
272 PHA03333 putative ATPase subun 96.0 0.098 2.1E-06 55.6 12.6 148 145-310 171-332 (752)
273 PRK09183 transposase/IS protei 96.0 0.043 9.3E-07 52.5 9.3 45 155-208 99-143 (259)
274 TIGR02881 spore_V_K stage V sp 96.0 0.017 3.7E-07 55.5 6.7 17 159-175 43-59 (261)
275 PRK07764 DNA polymerase III su 95.9 0.085 1.8E-06 58.6 12.7 39 268-307 119-157 (824)
276 TIGR01547 phage_term_2 phage t 95.9 0.042 9.1E-07 56.4 9.8 145 161-322 4-152 (396)
277 PRK14088 dnaA chromosomal repl 95.9 0.082 1.8E-06 54.8 11.9 43 160-209 132-174 (440)
278 PRK07993 DNA polymerase III su 95.9 0.077 1.7E-06 52.7 11.2 43 143-186 2-51 (334)
279 TIGR00362 DnaA chromosomal rep 95.9 0.064 1.4E-06 55.2 11.1 42 160-208 138-179 (405)
280 PRK12402 replication factor C 95.9 0.037 8E-07 55.5 9.2 39 268-307 124-162 (337)
281 PRK06090 DNA polymerase III su 95.9 0.09 2E-06 51.6 11.5 43 143-186 3-52 (319)
282 PF01695 IstB_IS21: IstB-like 95.9 0.02 4.3E-07 51.3 6.3 49 153-210 42-90 (178)
283 PRK04195 replication factor C 95.9 0.071 1.5E-06 56.2 11.5 17 159-175 40-56 (482)
284 PF05876 Terminase_GpA: Phage 95.9 0.019 4.2E-07 61.1 7.2 156 143-313 16-182 (557)
285 PF05127 Helicase_RecD: Helica 95.9 0.0049 1.1E-07 54.5 2.2 123 162-310 1-123 (177)
286 PRK07994 DNA polymerase III su 95.9 0.11 2.4E-06 55.9 12.6 38 268-306 118-155 (647)
287 cd01122 GP4d_helicase GP4d_hel 95.8 0.066 1.4E-06 51.8 10.1 55 155-217 27-81 (271)
288 PRK09111 DNA polymerase III su 95.8 0.084 1.8E-06 56.6 11.5 40 267-307 130-169 (598)
289 PRK14086 dnaA chromosomal repl 95.8 0.029 6.4E-07 59.4 7.8 108 160-315 316-425 (617)
290 PRK14964 DNA polymerase III su 95.7 0.11 2.3E-06 54.1 11.6 41 268-310 115-155 (491)
291 KOG0991 Replication factor C, 95.7 0.013 2.7E-07 53.2 3.9 44 265-309 109-152 (333)
292 TIGR01074 rep ATP-dependent DN 95.7 0.052 1.1E-06 59.9 9.7 70 144-219 2-71 (664)
293 PRK08699 DNA polymerase III su 95.7 0.1 2.2E-06 51.6 10.8 41 144-185 2-47 (325)
294 TIGR01425 SRP54_euk signal rec 95.6 0.17 3.6E-06 51.7 12.3 53 269-321 182-235 (429)
295 COG1435 Tdk Thymidine kinase [ 95.6 0.04 8.7E-07 48.9 6.8 103 160-296 6-108 (201)
296 PRK00411 cdc6 cell division co 95.6 0.099 2.2E-06 53.7 11.0 25 159-184 56-80 (394)
297 PRK08533 flagellar accessory p 95.6 0.14 3.1E-06 48.0 11.1 52 157-217 23-74 (230)
298 PRK00771 signal recognition pa 95.6 0.19 4.1E-06 51.7 12.7 52 270-321 176-228 (437)
299 COG1474 CDC6 Cdc6-related prot 95.6 0.14 2.9E-06 51.6 11.4 25 160-185 44-68 (366)
300 PRK14956 DNA polymerase III su 95.6 0.14 3E-06 52.8 11.6 21 161-182 43-63 (484)
301 PRK13341 recombination factor 95.5 0.11 2.5E-06 56.9 11.6 39 269-312 109-147 (725)
302 KOG0739 AAA+-type ATPase [Post 95.5 0.23 5E-06 47.0 11.7 170 95-329 111-297 (439)
303 COG1222 RPT1 ATP-dependent 26S 95.5 0.23 5.1E-06 48.3 11.9 17 159-175 186-202 (406)
304 COG0593 DnaA ATPase involved i 95.4 0.089 1.9E-06 53.0 9.5 47 269-315 175-223 (408)
305 PRK14952 DNA polymerase III su 95.4 0.11 2.4E-06 55.4 10.7 39 268-307 117-155 (584)
306 PRK09376 rho transcription ter 95.4 0.11 2.4E-06 51.9 9.9 100 81-184 71-194 (416)
307 PRK12724 flagellar biosynthesi 95.4 0.21 4.5E-06 50.6 11.9 54 268-321 298-356 (432)
308 PRK14960 DNA polymerase III su 95.4 0.062 1.4E-06 57.2 8.6 40 268-309 117-156 (702)
309 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.16 3.5E-06 50.9 11.0 110 158-314 62-172 (362)
310 PRK11034 clpA ATP-dependent Cl 95.3 0.14 3.1E-06 56.4 11.6 17 159-175 208-224 (758)
311 PRK14962 DNA polymerase III su 95.3 0.24 5.3E-06 51.6 12.7 15 161-175 39-53 (472)
312 PRK10917 ATP-dependent DNA hel 95.3 0.1 2.2E-06 57.4 10.5 74 375-448 311-389 (681)
313 PRK06645 DNA polymerase III su 95.3 0.24 5.2E-06 52.0 12.6 23 160-183 45-67 (507)
314 PF05496 RuvB_N: Holliday junc 95.3 0.03 6.6E-07 51.2 5.2 16 160-175 52-67 (233)
315 PRK07940 DNA polymerase III su 95.3 0.17 3.8E-06 51.4 11.2 44 268-313 116-159 (394)
316 PRK14951 DNA polymerase III su 95.3 0.18 3.9E-06 54.1 11.7 23 161-184 41-63 (618)
317 PRK14965 DNA polymerase III su 95.3 0.16 3.5E-06 54.5 11.5 39 268-307 118-156 (576)
318 PRK06731 flhF flagellar biosyn 95.2 0.29 6.4E-06 46.8 11.9 156 158-362 75-236 (270)
319 CHL00181 cbbX CbbX; Provisiona 95.2 0.12 2.6E-06 50.2 9.5 18 158-175 59-76 (287)
320 PRK14961 DNA polymerase III su 95.2 0.21 4.5E-06 50.5 11.6 39 268-307 118-156 (363)
321 KOG1513 Nuclear helicase MOP-3 95.2 0.033 7.1E-07 59.0 5.6 156 142-310 263-454 (1300)
322 PRK09112 DNA polymerase III su 95.2 0.15 3.2E-06 51.1 10.1 42 268-310 140-181 (351)
323 TIGR03015 pepcterm_ATPase puta 95.2 0.18 3.8E-06 48.7 10.6 32 144-175 24-60 (269)
324 PRK08691 DNA polymerase III su 95.1 0.14 3E-06 55.1 10.3 39 268-307 118-156 (709)
325 PRK14969 DNA polymerase III su 95.1 0.16 3.5E-06 53.9 10.8 39 268-307 118-156 (527)
326 PRK14949 DNA polymerase III su 95.1 0.085 1.8E-06 58.1 8.8 38 268-306 118-155 (944)
327 PRK14723 flhF flagellar biosyn 95.1 0.32 7E-06 53.1 13.1 67 251-321 249-317 (767)
328 PHA03368 DNA packaging termina 95.1 0.23 5E-06 52.7 11.5 134 159-312 255-392 (738)
329 PRK05580 primosome assembly pr 95.1 0.18 3.9E-06 55.3 11.5 97 347-451 170-267 (679)
330 PRK08939 primosomal protein Dn 95.0 0.3 6.5E-06 47.9 11.6 45 158-211 156-200 (306)
331 COG4626 Phage terminase-like p 95.0 0.28 6.1E-06 50.8 11.7 149 143-309 61-224 (546)
332 PRK07471 DNA polymerase III su 95.0 0.35 7.5E-06 48.7 12.3 135 161-310 44-181 (365)
333 PRK14957 DNA polymerase III su 95.0 0.19 4.1E-06 53.2 10.8 39 268-307 118-156 (546)
334 PRK11331 5-methylcytosine-spec 95.0 0.079 1.7E-06 54.0 7.6 32 144-175 180-211 (459)
335 PRK14948 DNA polymerase III su 95.0 0.23 5E-06 53.7 11.6 24 160-184 40-63 (620)
336 TIGR02928 orc1/cdc6 family rep 95.0 0.16 3.4E-06 51.6 10.0 25 159-184 41-65 (365)
337 PRK14959 DNA polymerase III su 94.9 0.18 3.9E-06 53.8 10.5 23 160-183 40-62 (624)
338 COG0470 HolB ATPase involved i 94.9 0.16 3.5E-06 50.5 9.9 39 268-307 108-146 (325)
339 PRK05563 DNA polymerase III su 94.9 0.42 9.1E-06 51.2 13.4 16 160-175 40-55 (559)
340 PRK11823 DNA repair protein Ra 94.9 0.16 3.5E-06 52.7 10.0 51 158-217 80-130 (446)
341 cd01121 Sms Sms (bacterial rad 94.9 0.21 4.6E-06 50.3 10.4 51 158-217 82-132 (372)
342 TIGR00064 ftsY signal recognit 94.9 0.5 1.1E-05 45.5 12.6 55 268-322 153-214 (272)
343 PRK14963 DNA polymerase III su 94.9 0.24 5.2E-06 52.1 11.2 23 161-184 39-61 (504)
344 PRK13833 conjugal transfer pro 94.9 0.1 2.2E-06 51.3 7.9 65 134-206 121-186 (323)
345 TIGR02880 cbbX_cfxQ probable R 94.8 0.16 3.5E-06 49.4 9.1 18 158-175 58-75 (284)
346 TIGR02639 ClpA ATP-dependent C 94.8 0.58 1.3E-05 52.1 14.5 17 159-175 204-220 (731)
347 PRK12726 flagellar biosynthesi 94.8 0.29 6.3E-06 48.8 10.6 19 158-176 206-224 (407)
348 COG3973 Superfamily I DNA and 94.8 0.19 4.2E-06 52.1 9.6 88 127-216 188-282 (747)
349 COG1444 Predicted P-loop ATPas 94.7 0.64 1.4E-05 50.5 13.9 147 136-310 207-356 (758)
350 PRK14950 DNA polymerase III su 94.7 0.32 7E-06 52.5 11.9 22 161-183 41-62 (585)
351 TIGR00595 priA primosomal prot 94.7 0.17 3.7E-06 53.4 9.5 94 349-450 7-101 (505)
352 PRK10867 signal recognition pa 94.6 0.49 1.1E-05 48.6 12.4 34 161-201 103-136 (433)
353 TIGR02525 plasmid_TraJ plasmid 94.6 0.1 2.2E-06 52.4 7.4 27 158-185 149-175 (372)
354 KOG2028 ATPase related to the 94.6 0.22 4.7E-06 48.5 9.0 16 160-175 164-179 (554)
355 PRK05896 DNA polymerase III su 94.6 0.15 3.3E-06 54.1 8.8 24 160-184 40-63 (605)
356 TIGR00643 recG ATP-dependent D 94.5 0.21 4.5E-06 54.6 10.1 74 375-448 285-363 (630)
357 PRK13894 conjugal transfer ATP 94.5 0.13 2.8E-06 50.7 7.7 66 133-206 124-190 (319)
358 TIGR02524 dot_icm_DotB Dot/Icm 94.5 0.1 2.2E-06 52.3 7.1 27 157-184 133-159 (358)
359 cd00984 DnaB_C DnaB helicase C 94.5 0.28 6E-06 46.5 9.8 39 157-202 12-50 (242)
360 COG2909 MalT ATP-dependent tra 94.5 0.093 2E-06 56.7 6.9 42 269-310 129-170 (894)
361 KOG0738 AAA+-type ATPase [Post 94.4 0.29 6.3E-06 48.1 9.6 17 159-175 246-262 (491)
362 COG1200 RecG RecG-like helicas 94.4 0.21 4.6E-06 52.8 9.3 73 376-448 313-390 (677)
363 TIGR03346 chaperone_ClpB ATP-d 94.4 0.35 7.6E-06 54.8 11.9 17 159-175 195-211 (852)
364 KOG1133 Helicase of the DEAD s 94.4 0.055 1.2E-06 56.7 4.9 42 143-184 15-60 (821)
365 TIGR00959 ffh signal recogniti 94.3 0.76 1.6E-05 47.2 13.0 34 161-201 102-135 (428)
366 COG4962 CpaF Flp pilus assembl 94.3 0.1 2.2E-06 50.7 6.2 61 139-208 153-214 (355)
367 PRK06995 flhF flagellar biosyn 94.3 0.56 1.2E-05 48.7 11.9 19 159-177 257-275 (484)
368 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.45 9.7E-06 44.6 10.6 51 157-216 19-69 (229)
369 KOG0742 AAA+-type ATPase [Post 94.2 0.066 1.4E-06 52.7 4.8 17 159-175 385-401 (630)
370 cd00561 CobA_CobO_BtuR ATP:cor 94.2 1.6 3.4E-05 38.1 12.9 52 267-318 93-146 (159)
371 PRK14955 DNA polymerase III su 94.2 0.56 1.2E-05 48.1 12.0 24 161-185 41-64 (397)
372 PRK07399 DNA polymerase III su 94.2 0.7 1.5E-05 45.5 12.1 53 255-310 111-163 (314)
373 KOG0737 AAA+-type ATPase [Post 94.2 0.28 6.1E-06 48.0 8.9 56 120-175 88-144 (386)
374 PRK00440 rfc replication facto 94.2 0.51 1.1E-05 46.8 11.4 38 269-307 102-139 (319)
375 PTZ00293 thymidine kinase; Pro 94.1 0.43 9.2E-06 43.6 9.6 39 158-204 4-42 (211)
376 TIGR00678 holB DNA polymerase 94.1 0.71 1.5E-05 41.8 11.3 25 160-185 16-40 (188)
377 TIGR00708 cobA cob(I)alamin ad 94.1 1.5 3.2E-05 38.8 12.6 51 268-318 96-148 (173)
378 CHL00095 clpC Clp protease ATP 94.1 0.38 8.2E-06 54.3 11.2 17 159-175 201-217 (821)
379 COG3972 Superfamily I DNA and 94.1 0.21 4.5E-06 50.5 8.0 143 132-282 152-308 (660)
380 PF06745 KaiC: KaiC; InterPro 93.9 0.17 3.6E-06 47.5 6.9 53 157-217 18-70 (226)
381 COG2804 PulE Type II secretory 93.9 0.23 5.1E-06 50.8 8.2 41 144-185 242-284 (500)
382 TIGR00580 mfd transcription-re 93.9 0.36 7.8E-06 54.6 10.5 74 375-448 501-579 (926)
383 TIGR03689 pup_AAA proteasome A 93.9 0.4 8.6E-06 50.2 10.1 18 158-175 216-233 (512)
384 PRK06067 flagellar accessory p 93.9 0.71 1.5E-05 43.4 11.2 51 158-217 25-75 (234)
385 PRK10416 signal recognition pa 93.9 1.5 3.2E-05 43.3 13.6 54 268-321 195-255 (318)
386 PRK07133 DNA polymerase III su 93.9 0.54 1.2E-05 51.2 11.2 15 161-175 43-57 (725)
387 cd03115 SRP The signal recogni 93.8 2 4.2E-05 38.2 13.4 53 269-321 82-135 (173)
388 PRK14721 flhF flagellar biosyn 93.8 0.73 1.6E-05 47.0 11.6 84 267-363 267-352 (420)
389 PRK10865 protein disaggregatio 93.8 0.52 1.1E-05 53.3 11.6 16 160-175 201-216 (857)
390 PRK06904 replicative DNA helic 93.8 0.88 1.9E-05 47.6 12.5 115 157-282 220-347 (472)
391 TIGR00602 rad24 checkpoint pro 93.7 0.95 2.1E-05 48.8 12.9 17 159-175 111-127 (637)
392 PRK08451 DNA polymerase III su 93.7 0.67 1.4E-05 48.9 11.5 39 268-307 116-154 (535)
393 PRK05986 cob(I)alamin adenolsy 93.7 1.2 2.5E-05 40.1 11.4 52 267-318 113-166 (191)
394 KOG0741 AAA+-type ATPase [Post 93.7 0.38 8.2E-06 49.3 9.0 17 159-175 257-273 (744)
395 KOG1131 RNA polymerase II tran 93.6 0.45 9.7E-06 48.5 9.4 75 140-218 13-91 (755)
396 TIGR02782 TrbB_P P-type conjug 93.6 0.2 4.3E-06 49.0 7.0 65 134-206 109-174 (299)
397 COG1198 PriA Primosomal protei 93.6 0.29 6.3E-06 53.2 8.6 99 342-448 220-319 (730)
398 PF05729 NACHT: NACHT domain 93.5 0.9 2E-05 39.7 10.6 25 160-185 2-26 (166)
399 KOG0652 26S proteasome regulat 93.5 0.51 1.1E-05 43.8 8.8 17 159-175 206-222 (424)
400 PRK14953 DNA polymerase III su 93.5 1.8 3.8E-05 45.6 14.1 16 161-176 41-56 (486)
401 PRK14873 primosome assembly pr 93.4 0.58 1.2E-05 51.0 10.7 95 349-451 170-266 (665)
402 TIGR01420 pilT_fam pilus retra 93.2 0.24 5.1E-06 49.7 6.9 42 158-206 122-163 (343)
403 TIGR03345 VI_ClpV1 type VI sec 93.1 0.91 2E-05 51.2 12.1 28 148-175 192-225 (852)
404 PHA00350 putative assembly pro 93.1 1 2.3E-05 45.4 11.2 51 270-321 82-155 (399)
405 PRK14954 DNA polymerase III su 93.1 0.92 2E-05 49.0 11.6 23 161-184 41-63 (620)
406 PRK05973 replicative DNA helic 93.1 0.4 8.7E-06 44.9 7.8 58 151-217 57-114 (237)
407 TIGR02397 dnaX_nterm DNA polym 93.1 1.2 2.5E-05 45.0 11.9 24 160-184 38-61 (355)
408 PF01637 Arch_ATPase: Archaeal 93.1 0.23 4.9E-06 46.5 6.4 57 250-310 103-165 (234)
409 COG0552 FtsY Signal recognitio 93.0 2.1 4.6E-05 41.6 12.6 129 161-321 142-280 (340)
410 PRK06305 DNA polymerase III su 92.9 1.1 2.3E-05 46.7 11.5 24 160-184 41-64 (451)
411 TIGR03600 phage_DnaB phage rep 92.9 0.83 1.8E-05 47.3 10.7 114 157-282 193-318 (421)
412 TIGR01243 CDC48 AAA family ATP 92.8 0.56 1.2E-05 52.3 9.9 17 159-175 488-504 (733)
413 TIGR03499 FlhF flagellar biosy 92.8 0.53 1.2E-05 45.7 8.6 18 159-176 195-212 (282)
414 COG5008 PilU Tfp pilus assembl 92.8 0.25 5.5E-06 45.9 5.8 22 160-182 129-150 (375)
415 TIGR01243 CDC48 AAA family ATP 92.7 0.94 2E-05 50.6 11.5 19 157-175 211-229 (733)
416 PRK03992 proteasome-activating 92.7 0.55 1.2E-05 47.9 8.9 17 159-175 166-182 (389)
417 PTZ00454 26S protease regulato 92.7 0.72 1.6E-05 47.0 9.6 55 118-175 139-196 (398)
418 PRK08840 replicative DNA helic 92.6 1.7 3.6E-05 45.4 12.3 117 155-282 214-342 (464)
419 TIGR03877 thermo_KaiC_1 KaiC d 92.6 0.27 5.8E-06 46.5 6.0 52 157-217 20-71 (237)
420 PF03796 DnaB_C: DnaB-like hel 92.5 0.68 1.5E-05 44.4 8.9 114 158-283 19-144 (259)
421 COG1219 ClpX ATP-dependent pro 92.5 0.097 2.1E-06 50.0 2.8 18 159-176 98-115 (408)
422 COG2255 RuvB Holliday junction 92.4 0.41 8.8E-06 45.2 6.7 16 160-175 54-69 (332)
423 PRK10436 hypothetical protein; 92.4 0.41 8.9E-06 49.7 7.6 38 145-183 203-242 (462)
424 PRK13764 ATPase; Provisional 92.4 0.31 6.7E-06 52.0 6.8 27 157-184 256-282 (602)
425 KOG1970 Checkpoint RAD17-RFC c 92.4 0.67 1.5E-05 47.8 8.7 24 157-182 109-132 (634)
426 PF06733 DEAD_2: DEAD_2; Inte 92.3 0.082 1.8E-06 47.3 2.1 43 241-283 115-159 (174)
427 KOG0298 DEAD box-containing he 92.3 0.15 3.3E-06 57.2 4.4 100 374-477 1221-1320(1394)
428 PRK06647 DNA polymerase III su 92.1 2.5 5.3E-05 45.3 13.2 23 161-184 41-63 (563)
429 COG2874 FlaH Predicted ATPases 92.1 5.3 0.00012 36.4 13.0 45 267-311 121-168 (235)
430 PRK07004 replicative DNA helic 92.1 1.4 3E-05 46.1 11.1 114 157-282 212-337 (460)
431 PF03237 Terminase_6: Terminas 92.1 1.5 3.1E-05 44.5 11.3 147 162-325 1-154 (384)
432 TIGR00635 ruvB Holliday juncti 92.1 0.68 1.5E-05 45.6 8.5 17 159-175 31-47 (305)
433 PRK10689 transcription-repair 92.1 0.92 2E-05 52.7 10.5 74 375-448 650-728 (1147)
434 PF01443 Viral_helicase1: Vira 92.1 0.19 4.2E-06 47.2 4.4 15 161-175 1-15 (234)
435 COG1110 Reverse gyrase [DNA re 92.0 0.31 6.8E-06 53.7 6.3 60 375-434 126-191 (1187)
436 PRK08006 replicative DNA helic 92.0 3.2 7E-05 43.4 13.7 114 158-282 224-349 (471)
437 COG1485 Predicted ATPase [Gene 92.0 2.4 5.3E-05 41.5 11.6 110 159-315 66-176 (367)
438 PF13555 AAA_29: P-loop contai 92.0 0.23 4.9E-06 35.5 3.5 26 158-185 23-48 (62)
439 PRK08058 DNA polymerase III su 92.0 0.88 1.9E-05 45.3 9.2 41 267-308 108-148 (329)
440 PRK13851 type IV secretion sys 91.9 0.23 5E-06 49.4 4.8 44 155-207 159-202 (344)
441 KOG0733 Nuclear AAA ATPase (VC 91.8 1.3 2.9E-05 46.3 10.1 54 119-175 506-562 (802)
442 cd01129 PulE-GspE PulE/GspE Th 91.8 0.39 8.5E-06 46.1 6.2 38 145-183 65-104 (264)
443 cd01130 VirB11-like_ATPase Typ 91.8 0.5 1.1E-05 42.7 6.7 33 143-175 9-42 (186)
444 TIGR01241 FtsH_fam ATP-depende 91.7 0.87 1.9E-05 48.3 9.3 17 159-175 89-105 (495)
445 PHA03372 DNA packaging termina 91.7 2.7 5.8E-05 44.4 12.3 127 160-310 204-337 (668)
446 PF10412 TrwB_AAD_bind: Type I 91.7 0.24 5.2E-06 50.5 4.9 45 157-209 14-58 (386)
447 TIGR00665 DnaB replicative DNA 91.5 2 4.3E-05 44.8 11.5 112 158-282 195-318 (434)
448 PRK08506 replicative DNA helic 91.5 1.6 3.4E-05 45.9 10.7 113 158-282 192-315 (472)
449 TIGR02655 circ_KaiC circadian 91.4 1.3 2.9E-05 46.6 10.2 59 150-217 250-313 (484)
450 PRK04841 transcriptional regul 91.4 1.1 2.3E-05 51.7 10.4 42 269-310 121-162 (903)
451 TIGR03345 VI_ClpV1 type VI sec 91.3 0.93 2E-05 51.1 9.4 15 161-175 599-613 (852)
452 PRK14970 DNA polymerase III su 91.3 2.5 5.5E-05 42.8 11.9 16 160-175 41-56 (367)
453 PRK05748 replicative DNA helic 91.3 1.9 4.2E-05 45.0 11.2 113 158-282 203-327 (448)
454 KOG0741 AAA+-type ATPase [Post 91.3 2.4 5.2E-05 43.7 11.1 70 126-205 494-575 (744)
455 PRK08760 replicative DNA helic 91.1 2.2 4.9E-05 44.7 11.4 112 159-282 230-352 (476)
456 cd01126 TraG_VirD4 The TraG/Tr 91.0 0.2 4.3E-06 51.2 3.5 47 160-216 1-47 (384)
457 TIGR00416 sms DNA repair prote 91.0 1.1 2.5E-05 46.5 9.1 51 158-217 94-144 (454)
458 KOG0732 AAA+-type ATPase conta 91.0 0.43 9.3E-06 53.4 6.1 56 119-175 260-316 (1080)
459 COG1197 Mfd Transcription-repa 90.9 0.99 2.2E-05 51.0 8.8 74 375-448 644-722 (1139)
460 PHA00012 I assembly protein 90.7 2.6 5.5E-05 41.1 10.3 56 267-323 79-140 (361)
461 COG3886 Predicted HKD family n 90.6 0.075 1.6E-06 46.5 0.0 30 28-57 137-166 (198)
462 PRK13900 type IV secretion sys 90.6 0.74 1.6E-05 45.7 7.0 42 156-206 158-199 (332)
463 PRK05917 DNA polymerase III su 90.5 3.2 6.8E-05 40.2 10.9 42 268-310 94-135 (290)
464 TIGR02640 gas_vesic_GvpN gas v 90.4 0.55 1.2E-05 45.1 5.8 27 149-175 12-38 (262)
465 COG3267 ExeA Type II secretory 90.3 2.3 4.9E-05 39.8 9.2 23 154-176 46-69 (269)
466 PF02534 T4SS-DNA_transf: Type 90.3 0.36 7.8E-06 50.8 4.8 49 159-217 45-93 (469)
467 PF12846 AAA_10: AAA-like doma 90.3 0.48 1E-05 46.4 5.4 42 159-208 2-43 (304)
468 cd01131 PilT Pilus retraction 90.2 0.45 9.7E-06 43.5 4.7 39 161-206 4-42 (198)
469 TIGR00763 lon ATP-dependent pr 90.1 1.6 3.6E-05 48.9 10.0 18 158-175 347-364 (775)
470 PRK00080 ruvB Holliday junctio 90.1 0.81 1.8E-05 45.6 6.9 17 159-175 52-68 (328)
471 PRK14971 DNA polymerase III su 90.1 2.9 6.3E-05 45.3 11.5 41 267-309 119-159 (614)
472 TIGR00767 rho transcription te 90.1 0.92 2E-05 45.7 7.1 19 157-175 167-185 (415)
473 TIGR02858 spore_III_AA stage I 90.1 1.2 2.6E-05 42.8 7.6 24 151-174 101-127 (270)
474 KOG1806 DEAD box containing he 89.8 0.62 1.3E-05 51.3 5.9 74 138-217 733-806 (1320)
475 COG1132 MdlB ABC-type multidru 89.8 0.63 1.4E-05 50.3 6.3 21 155-175 352-372 (567)
476 CHL00176 ftsH cell division pr 89.6 1.6 3.4E-05 47.5 8.9 17 159-175 217-233 (638)
477 PRK04328 hypothetical protein; 89.5 0.78 1.7E-05 43.6 6.0 52 157-217 22-73 (249)
478 cd01127 TrwB Bacterial conjuga 89.4 0.37 8.1E-06 49.6 4.0 45 157-209 41-85 (410)
479 PRK13700 conjugal transfer pro 89.3 0.42 9.1E-06 51.6 4.3 71 130-210 157-229 (732)
480 PRK13897 type IV secretion sys 89.3 0.37 7.9E-06 51.7 3.8 48 159-216 159-206 (606)
481 KOG0726 26S proteasome regulat 89.3 0.63 1.4E-05 44.0 4.8 18 158-175 219-236 (440)
482 TIGR02533 type_II_gspE general 89.2 0.61 1.3E-05 48.9 5.4 37 145-182 227-265 (486)
483 PRK09087 hypothetical protein; 89.1 1 2.2E-05 42.1 6.3 17 159-175 45-61 (226)
484 TIGR03878 thermo_KaiC_2 KaiC d 89.0 1 2.2E-05 43.1 6.4 38 157-202 35-72 (259)
485 PF00437 T2SE: Type II/IV secr 88.9 0.61 1.3E-05 45.0 4.9 42 157-206 126-167 (270)
486 COG0542 clpA ATP-binding subun 88.9 4.4 9.6E-05 44.5 11.5 83 160-281 523-605 (786)
487 PRK05595 replicative DNA helic 88.8 1.3 2.9E-05 46.0 7.6 115 158-283 201-325 (444)
488 COG4185 Uncharacterized protei 88.7 2 4.3E-05 37.0 7.0 18 161-178 5-22 (187)
489 COG3598 RepA RecA-family ATPas 88.7 3.7 8.1E-05 39.7 9.5 71 148-219 78-151 (402)
490 PRK06321 replicative DNA helic 88.7 6.5 0.00014 41.2 12.4 119 151-282 215-349 (472)
491 COG0541 Ffh Signal recognition 88.6 7.3 0.00016 39.4 12.0 130 161-321 103-235 (451)
492 TIGR02538 type_IV_pilB type IV 88.4 0.79 1.7E-05 49.2 5.7 38 145-183 301-340 (564)
493 PF10593 Z1: Z1 domain; Inter 88.4 1.3 2.8E-05 41.6 6.5 89 398-491 110-203 (239)
494 cd01128 rho_factor Transcripti 88.2 0.77 1.7E-05 43.5 4.8 20 155-174 13-32 (249)
495 TIGR02974 phageshock_pspF psp 88.2 2.3 5E-05 42.3 8.5 22 154-175 18-39 (329)
496 KOG1807 Helicases [Replication 88.2 1 2.2E-05 48.3 6.0 75 140-216 375-449 (1025)
497 PRK05564 DNA polymerase III su 88.1 4.7 0.0001 39.8 10.6 40 268-309 92-131 (313)
498 COG0513 SrmB Superfamily II DN 88.0 1.2 2.6E-05 47.3 6.7 68 377-448 102-180 (513)
499 cd01393 recA_like RecA is a b 88.0 3.5 7.5E-05 38.4 9.3 46 158-205 19-64 (226)
500 COG0210 UvrD Superfamily I DNA 88.0 1.5 3.2E-05 48.5 7.6 71 143-219 2-72 (655)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-67 Score=518.85 Aligned_cols=372 Identities=46% Similarity=0.770 Sum_probs=347.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHh-cCCCCCCCCCeEEEE
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~~lil 200 (565)
.|.++++++++..+++..||..|+|+|.+.||.++.|+|++.+|.||||||++|++|++.++.. +....++++|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999998 556667789999999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|||||+.|+.+.+..+.... .++..+++||.....+...+..+++|+|+||++|.+++..+...+.++.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 999999999999999998876 5789999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHhC-CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcC--CCCCceEEEEEEeccchHHHHHH
Q 008430 281 MLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 357 (565)
|++++|.+.+++|+..+ ++..|++++|||+|..+..++..|+.++..+.+.... ....++.++...++...|...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 5566899999999999999999999999999887553 55677888888888888888888
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCC
Q 008430 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..|.... ....+|+||||++++.|++|+..|...++++..+||+.++.+|+.+++.|++|+..||||||++++|
T Consensus 331 ~lL~~~~------~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRG 404 (519)
T KOG0331|consen 331 KLLEDIS------SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARG 404 (519)
T ss_pred HHHHHHh------ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccccc
Confidence 8887765 2344579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhhhcCC
Q 008430 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESGN 500 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 500 (565)
+|+|+|++||+||+|.+..+|+||+||+||+|+.|.+++|++..+......+.+.+.+....-
T Consensus 405 LDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v 467 (519)
T KOG0331|consen 405 LDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTV 467 (519)
T ss_pred CCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999999987665443
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-66 Score=478.16 Aligned_cols=367 Identities=41% Similarity=0.627 Sum_probs=345.8
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeE
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 197 (565)
....+|.++++.+++.++++..++..|+++|+++||.++.|+++|..|.||||||.+|++|+++.++.++ ..+++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999864 46889
Q ss_pred EEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHH-cCCCCCCCceEEEec
Q 008430 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILD 276 (565)
Q Consensus 198 lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~-~~~~~~~~~~~iIiD 276 (565)
||++|+|||+.|+.+.|..+.... ++.+..+.||.+...+...+...++|+|+||++|.+++. ...+.++.++++|+|
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 999999999999999999998775 799999999999999999999999999999999999998 467899999999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHH
Q 008430 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 356 (565)
|||++++++|...+..|+..++...|.+++|||++..+.++...-+.+|..+...........+.+.+..++...|..+|
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccC
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
+.++.+.. +..+||||++...++.++-.|+..|+.+..+||.|++..|.-.++.|++|..+||+|||++++
T Consensus 292 V~ll~e~~---------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSR 362 (476)
T KOG0330|consen 292 VYLLNELA---------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASR 362 (476)
T ss_pred HHHHHhhc---------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcc
Confidence 98887543 235999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhhhcC
Q 008430 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESG 499 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 499 (565)
|+|+|.|++||+||.|.+..+|+||+||++|+|..|.++.+++..|...+.+|+..+.+.-..
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999998776543
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-63 Score=522.82 Aligned_cols=409 Identities=41% Similarity=0.661 Sum_probs=362.8
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC
Q 008430 79 FNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG 158 (565)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g 158 (565)
.++|..+..+..++.++.+.++...++.+.. ....|.|+.+|+++++++.++++|...||.+|+++|.++||.++.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G 167 (545)
T PTZ00110 91 KNFYKEHPEVSALSSKEVDEIRKEKEITIIA---GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSG 167 (545)
T ss_pred hhcccCChhhhcCCHHHHHHHHHhcCcEEec---CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC
Confidence 3677778888899999999999988877631 2467899999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+++|+++|||||||++|++|++..+..++....+.++.+|||+||++|+.|+.+.++++.... .+.+..++|+.....+
T Consensus 168 ~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q 246 (545)
T PTZ00110 168 RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQ 246 (545)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHH
Confidence 999999999999999999999998877654444568899999999999999999999987664 6788899999988888
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHH
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 318 (565)
...+..+++|+|+||++|.+++......+.++++|||||||++.+++|...+.+++..+++..|++++|||++..++.+.
T Consensus 247 ~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~ 326 (545)
T PTZ00110 247 IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLA 326 (545)
T ss_pred HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHH
Confidence 88888899999999999999999888889999999999999999999999999999999999999999999999999888
Q ss_pred HHHcC-CCeEEEeCCcC-CCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH
Q 008430 319 QEYLT-DPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 319 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~ 396 (565)
..++. .+..+...... ....++.+.+..+....+...+...+..... ...++||||++++.|+.+++.|..
T Consensus 327 ~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-------~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 327 RDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-------DGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred HHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-------cCCeEEEEecChHHHHHHHHHHHH
Confidence 88875 46766665443 3345666667667766777776666644321 334799999999999999999999
Q ss_pred cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEE
Q 008430 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 397 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 476 (565)
.++.+..+||++++++|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+||+||.|..|.+++
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~ 479 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT 479 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHHHhhhc
Q 008430 477 FYTDRDMLLVAQIKKAIVDAES 498 (565)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~~~ 498 (565)
|+++.+...+..|.+.+.+...
T Consensus 480 ~~~~~~~~~~~~l~~~l~~~~q 501 (545)
T PTZ00110 480 FLTPDKYRLARDLVKVLREAKQ 501 (545)
T ss_pred EECcchHHHHHHHHHHHHHccC
Confidence 9999999999999888877653
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.8e-63 Score=477.04 Aligned_cols=409 Identities=41% Similarity=0.684 Sum_probs=369.9
Q ss_pred CccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEE
Q 008430 85 SDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGC 164 (565)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~ 164 (565)
......+++.++..|++.+++.+. ...+|.|+.+|++.+++.++++.+...||..|+|+|+.++|..++.+|+|.+
T Consensus 213 ~k~l~Em~~rdwri~redynis~k----g~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igv 288 (673)
T KOG0333|consen 213 EKVLAEMTERDWRIFREDYNISIK----GGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGV 288 (673)
T ss_pred hhhHHhcCCccceeeecceeeeec----CCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeE
Confidence 344555666666777777766654 3467999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCCC----CCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH
Q 008430 165 AETGSGKTAAFTIPMIQHCVAQTPVG----RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 165 a~TGsGKT~~~~l~~l~~~~~~~~~~----~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
+.||||||.+|++|++..+...++.. ...||.+++++||++|++|+.++-.++.+.+ ++++..++||....++--
T Consensus 289 aETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~f 367 (673)
T KOG0333|consen 289 AETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGF 367 (673)
T ss_pred EeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhh
Confidence 99999999999999999887766432 3469999999999999999999999998876 689999999999999988
Q ss_pred HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC---------------------
Q 008430 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD--------------------- 299 (565)
Q Consensus 241 ~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~--------------------- 299 (565)
.+..+|+|+|+||++|.+.+.+..+.++.+.|||+|||++|.+++|.+.+..++.+++.
T Consensus 368 qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~ 447 (673)
T KOG0333|consen 368 QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFS 447 (673)
T ss_pred hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcc
Confidence 88899999999999999999999999999999999999999999999999999998863
Q ss_pred ----CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCC
Q 008430 300 ----KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFP 375 (565)
Q Consensus 300 ----~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~ 375 (565)
-+|.++||||+++.++.++..|+.+|+.+.++....+.+.+.|.+..+..+++...|+..+... ..+
T Consensus 448 ~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~---------~~p 518 (673)
T KOG0333|consen 448 SSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN---------FDP 518 (673)
T ss_pred cccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC---------CCC
Confidence 1589999999999999999999999999999999999999999999999999998888888764 234
Q ss_pred eEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCc
Q 008430 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTV 455 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~ 455 (565)
++|||+|+++.|+.|++.|.+.|+.|..+||+-++++|+.++..|++|..+||||||++++|||||+|.+||+||.+.+.
T Consensus 519 piIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksi 598 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSI 598 (673)
T ss_pred CEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh-hcCCcchhhhh
Q 008430 456 EDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA-ESGNAVAFATG 507 (565)
Q Consensus 456 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 507 (565)
.+|+||+||+||+|+.|.++.|+++.|...+..|++.+.+. .....+.++..
T Consensus 599 eDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h 651 (673)
T KOG0333|consen 599 EDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANH 651 (673)
T ss_pred HHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccC
Confidence 99999999999999999999999999999999998888743 34444444443
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.5e-61 Score=503.39 Aligned_cols=404 Identities=36% Similarity=0.611 Sum_probs=353.0
Q ss_pred CCCCCccc-cCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCC
Q 008430 81 NWKPSDRV-LRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR 159 (565)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~ 159 (565)
+|.....+ ..++.++++.++...++.+.+ ...|.|+.+|.++++++.+++.|...||..|+|+|.++|+.++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g----~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~ 159 (518)
T PLN00206 84 FYVRDPGSTSGLSSSQAELLRRKLEIHVKG----EAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGR 159 (518)
T ss_pred CCccCcchhccCCHHHHHHHHHHCCCEecC----CCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Confidence 34444444 348899999999999887742 4678999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCC--CCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
++++++|||||||++|++|++..+..... .....++++|||+||++|+.|+.+.++.+.... ++.+..++||.....
T Consensus 160 dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~ 238 (518)
T PLN00206 160 SLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQ 238 (518)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHH
Confidence 99999999999999999999988765321 112357899999999999999999999887665 578888899988887
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHH
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 317 (565)
+...+..+++|+|+||++|.+++......++++++|||||||++.+.+|...+..++..++ ..|++++|||++..+..+
T Consensus 239 q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l 317 (518)
T PLN00206 239 QLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKF 317 (518)
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHH
Confidence 7777788899999999999999998888899999999999999999999999999998885 578999999999999999
Q ss_pred HHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH-
Q 008430 318 AQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA- 396 (565)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~- 396 (565)
...++.++..+...........+.+....+....+...+...+.... ...+++||||+++..|+.+++.|..
T Consensus 318 ~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~-------~~~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 318 ASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQ-------HFKPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred HHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhc-------ccCCCEEEEcCCchhHHHHHHHHhhc
Confidence 99999888888877666666667777777777667666666654322 1123699999999999999999975
Q ss_pred cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEE
Q 008430 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 397 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 476 (565)
.++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~ 470 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV 470 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHHHhhh
Q 008430 477 FYTDRDMLLVAQIKKAIVDAE 497 (565)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~~ 497 (565)
|++..+...+..+.+.+....
T Consensus 471 f~~~~~~~~~~~l~~~l~~~~ 491 (518)
T PLN00206 471 FVNEEDRNLFPELVALLKSSG 491 (518)
T ss_pred EEchhHHHHHHHHHHHHHHcC
Confidence 999999999999888887654
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-63 Score=461.62 Aligned_cols=421 Identities=40% Similarity=0.686 Sum_probs=386.9
Q ss_pred cCCCCCCCCCCCCccCCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCC
Q 008430 65 CRRSYASHPVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRP 144 (565)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~ 144 (565)
.....+.+.+.+|....|.+...+..++.++.+..+..+.+.+.+ ..+|+|+.+|.++.++..+++.|+++|+..|
T Consensus 118 V~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veG----d~ipPPIksF~eMKFP~~~L~~lk~KGI~~P 193 (610)
T KOG0341|consen 118 VAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEG----DDIPPPIKSFKEMKFPKPLLRGLKKKGIVHP 193 (610)
T ss_pred HHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeC----CCCCCchhhhhhccCCHHHHHHHHhcCCCCC
Confidence 334456677889988999999999999999999999999888863 4679999999999999999999999999999
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcC---CCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc-
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVLAPTRELAQQIEKEVKALSRS- 220 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~- 220 (565)
||+|.+.+|.++.|++.|.+|-||||||++|.+|++...+++. ++.++.||..|||||+++|+.|.++.+..++..
T Consensus 194 TpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L 273 (610)
T KOG0341|consen 194 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAAL 273 (610)
T ss_pred CceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888763 566788999999999999999999998888753
Q ss_pred ----CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHh
Q 008430 221 ----LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 221 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
.+.++..++.||....++...+..+.+|+|+||++|.+++......++-++|+++|||++|.+.||...++.|+.+
T Consensus 274 ~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~ 353 (610)
T KOG0341|consen 274 QEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSF 353 (610)
T ss_pred HhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCe
Q 008430 297 LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 297 ~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
|+...|.++||||+|..++.+++..+..|+.+.++......-++.+.+.++..+.|..++++.+.+. .++
T Consensus 354 FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT----------~Pp 423 (610)
T KOG0341|consen 354 FKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT----------SPP 423 (610)
T ss_pred HhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC----------CCc
Confidence 9999999999999999999999999999999999998888888888888888888888888777542 346
Q ss_pred EEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcc
Q 008430 377 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVE 456 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~ 456 (565)
+||||..+..++.+.++|--+|+.++.+||+-++++|...++.|+.|+-+|||+||+++.|+|+|++.+||+||.|....
T Consensus 424 VLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIE 503 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIE 503 (610)
T ss_pred eEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccccccCCCceeEEEEeccc-cHHHHHHHHHHHHhhhcC
Q 008430 457 DYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVDAESG 499 (565)
Q Consensus 457 ~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 499 (565)
.|+||+||+||.|+.|.+.+|+.+. +...+-.++..+.+.+..
T Consensus 504 NYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~ 547 (610)
T KOG0341|consen 504 NYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQE 547 (610)
T ss_pred HHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999875 666777787777665543
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-60 Score=493.99 Aligned_cols=364 Identities=45% Similarity=0.724 Sum_probs=332.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
..|.++++++.+++++.+.||..|+|+|..++|.++.|+|+++.|+||||||++|++|+++.+..... . ....+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~-~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--R-KYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--c-CCCceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999664210 1 11119999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||+||+.|+++.+..+......+.+..++||.....+...+..+++|||+||++|++++....+.+..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 99999999999999999887545889999999999999888888899999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCC--CCCceEEEEEEeccch-HHHHHH
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENE-KVDRLL 357 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-k~~~l~ 357 (565)
|+++||...+..|+..++.+.|+++||||++..+..+...++.+|..+.+..... ....+.+.+..+.... |...+.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888874444 6778889999888765 777777
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCC
Q 008430 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..+.... ..++||||+++..++.++..|...|+.+..+||++++.+|.++++.|++|+.+||||||++++|
T Consensus 266 ~ll~~~~---------~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 266 KLLKDED---------EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHhcCC---------CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 7665432 2259999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc-cHHHHHHHHHHHHhh
Q 008430 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVDA 496 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~ 496 (565)
||||+|++||+||.|.++..|+||+||+||+|..|.+++|+.+. |...++.+++.+...
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999986 889999998887555
No 8
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-61 Score=450.97 Aligned_cols=412 Identities=41% Similarity=0.649 Sum_probs=364.7
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHcC-ceEEec-C-CCCCCCCccCCcccC-CCCHHHHHHHHHCCCCCCCHHHHHHHHh
Q 008430 79 FNNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVA-S-GSVPAPAPIESFTDM-CLHPSIMKDIEFHEYTRPTSIQAQAMPV 154 (565)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~f~~~-~l~~~i~~~l~~~~~~~~~~~Q~~~l~~ 154 (565)
.++|+.+.....++.++++++++... +.+... + ...++|+|.-+|++. .-.+++++.+++.||.+|+|+|.+|||.
T Consensus 174 knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI 253 (629)
T KOG0336|consen 174 KNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPI 253 (629)
T ss_pred hhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccce
Confidence 47889999999999999999887653 444322 2 335789999999985 5678999999999999999999999999
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCC-CCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCC
Q 008430 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~-~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~ 233 (565)
+++|.+++.+|.||+|||++|++|-+.++..++. .....++.+|+++||++|+.|+.-+..++.- .+....+++||.
T Consensus 254 ~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~yggg 331 (629)
T KOG0336|consen 254 LLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGG 331 (629)
T ss_pred eecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCC
Confidence 9999999999999999999999999988877653 2345689999999999999999998888754 478899999999
Q ss_pred CHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChH
Q 008430 234 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 234 ~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
+..++...+.++.+|+++||++|.++...+.+++..+.|+|+|||++|++++|.+++++|+--++++.|+++.|||+|..
T Consensus 332 nR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~ 411 (629)
T KOG0336|consen 332 NRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEG 411 (629)
T ss_pred CchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEeCCcCC-CCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHH
Q 008430 314 IEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (565)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~ 392 (565)
+..+...|+.+|+.+..+.... ....+.+.+....+.++. .++..+.+.. .+..++||||.++..|+.|..
T Consensus 412 VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~m-------s~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 412 VRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVANM-------SSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred HHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHhc-------CCCceEEEEEechhhhhhccc
Confidence 9999999999999998887664 345666666444444554 4444443332 334469999999999999999
Q ss_pred HHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCce
Q 008430 393 ALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMG 472 (565)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g 472 (565)
.|+-.|+....+||+..+.+|+..++.|++|+++|||+||++++|+|+|+++||++||+|.+...|+||+||+||+|+.|
T Consensus 484 d~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 484 DFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred hhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHHHhhhcCC
Q 008430 473 QATSFYTDRDMLLVAQIKKAIVDAESGN 500 (565)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 500 (565)
..+.|++.+|...+.+|.+.+.+.+..-
T Consensus 564 ~sis~lt~~D~~~a~eLI~ILe~aeQev 591 (629)
T KOG0336|consen 564 TSISFLTRNDWSMAEELIQILERAEQEV 591 (629)
T ss_pred ceEEEEehhhHHHHHHHHHHHHHhhhhC
Confidence 9999999999999999999998776543
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-59 Score=484.66 Aligned_cols=367 Identities=37% Similarity=0.582 Sum_probs=322.7
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCC--CCCCCCeE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLA 197 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~~ 197 (565)
..+|+++++++.++++|...||..|+++|++||+.++.|+|++++||||||||++|++|+++.+...... ....++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999988765321 12246889
Q ss_pred EEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecc
Q 008430 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 198 lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 277 (565)
|||+|+++|+.|+++.+..+.... ++.+..++||.....+...+..+++|+|+||++|.+++....+.++++++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 999999999999999999988765 6889999999988888777888899999999999999988888999999999999
Q ss_pred hhHhhcCCCHHHHHHHHHhCCC--CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHH
Q 008430 278 ADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 355 (565)
||++.+.+|...+..++..++. ..+.+++|||++..+......++.+|..+.+.........+.+.+.......+...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 9999999999999999998874 45679999999999998888889888887766555444555555555555566555
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCccc
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
+...+.. ....++||||+++..|+.+++.|...|+.+..+||++++++|..+++.|++|+++|||||++++
T Consensus 246 l~~ll~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~ 316 (423)
T PRK04837 246 LQTLIEE---------EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAA 316 (423)
T ss_pred HHHHHHh---------cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhh
Confidence 5554432 1234699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
+|||+|++++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+...+..+++.+...
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999988888887666443
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-61 Score=428.38 Aligned_cols=365 Identities=35% Similarity=0.581 Sum_probs=336.7
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
..++.+|+++++.+++++.+..+||.+|..+|+.|++.+++|+++++.+..|+|||.+|.+.+++.+.-.. +..+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----ceee
Confidence 45678999999999999999999999999999999999999999999999999999999888877654321 3567
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
+|++.||+||+.|+.+.+..+.... ++.+..+.||.+..+....+..+.+++.+||+++++++.+..+.-..++++|+|
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 9999999999999999999988765 688999999999988888888999999999999999999999999999999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch-HHHH
Q 008430 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDR 355 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~ 355 (565)
|++.+++.+|..++..+++++++..|++++|||+|.++.+....|+.+|+.+.....+.....+.+++..+..++ |.+.
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhH
Confidence 999999999999999999999999999999999999999999999999999999888888888999988888766 7777
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCccc
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
|.++....... +++||||++..++.|.+.+.+..+.+..+||+|++++|+.++..|++|+.+||++||+.+
T Consensus 257 LcdLYd~LtIt---------QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa 327 (400)
T KOG0328|consen 257 LCDLYDTLTIT---------QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA 327 (400)
T ss_pred HHHHhhhhehh---------eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh
Confidence 76665443222 499999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
+|+|+|.|++||+||.|.+...|+||+||.||.|++|.++.|+..+|...++.+++.+.-.
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~ 388 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQ 388 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999998887543
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.5e-59 Score=483.69 Aligned_cols=365 Identities=42% Similarity=0.704 Sum_probs=321.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCC-CCCCCeEEEE
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVL 200 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~~lil 200 (565)
+|++++|++.++++|...||.+|+++|+++++.++.|+|+|+++|||+|||++|++|+++.+....... ...+.++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999876543211 1234589999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||++|+.|+.+.++.+.... ++.+..++|+.....+...+...++|+|+||++|.+++....+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999988765 5788889999988887777888899999999999999988888899999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (565)
+++++|...+..++..++...|++++|||++..+..+...++.++..+.+.........+.+.+..+....+...+...+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889899998888776655555556666666666555543333322
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCc
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
.. ....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+
T Consensus 241 ~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 241 GK---------GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred Hc---------CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 21 223469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
|+|++||+|++|.++.+|+||+||+||.|..|.+++++...|...++.+++.+...
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999988876543
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-58 Score=481.79 Aligned_cols=360 Identities=42% Similarity=0.645 Sum_probs=325.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.+|.++++++.++++|...||.+|+|+|++|++.++.|++++++||||+|||++|++|+++.+.... .+.++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999998875421 35679999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||++|+.|+.+.++.+.....++.+..++||.....+...+..+++|+|+||++|.+++....+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 99999999999999998876557889999999999888888888999999999999999998888899999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (565)
+.+.+|...+..++..+++..|++++|||++..+..+...++.++..+...... ....+.+.+..+....+...+...+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888775543 3345677777777777776666665
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCc
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
... ...++||||+++..++.+++.|.+.++.+..+||++++.+|+.+++.|++|+++|||||+++++|+|+
T Consensus 238 ~~~---------~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi 308 (460)
T PRK11776 238 LHH---------QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI 308 (460)
T ss_pred Hhc---------CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch
Confidence 331 22369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
|++++||++|.|.+...|+||+||+||.|+.|.+++++.+.|...+..+++.+..
T Consensus 309 ~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 309 KALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred hcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998888888777643
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.7e-58 Score=488.72 Aligned_cols=361 Identities=41% Similarity=0.667 Sum_probs=326.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
..+|.+++|++.++++|..+||.+|+|+|+++|+.++.|+++|+.||||+|||++|++|+++.+.... .++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEE
Confidence 34699999999999999999999999999999999999999999999999999999999998875431 3678999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
|+||++|+.|+++.+..+.....++.+..++||.....+...+..+++|||+||++|.+++....+.++++++|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 99999999999999999887666788999999999888888888889999999999999999888889999999999999
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008430 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (565)
++++++|...+..++..++...|+++||||++..+..+...++.++..+.+.........+.+.+..+....+...+...
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887766555556677777777766777766666
Q ss_pred HHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCC
Q 008430 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+... ...++||||+++..++.+++.|...|+.+..+||++++.+|..++++|++|+++|||||+++++|||
T Consensus 240 L~~~---------~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGID 310 (629)
T PRK11634 240 LEAE---------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 (629)
T ss_pred HHhc---------CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCC
Confidence 5432 1235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
+|+|++||+||.|.++..|+||+||+||.|+.|.+++|+++.+...++.+++.+.
T Consensus 311 ip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999888888876643
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-58 Score=484.80 Aligned_cols=366 Identities=40% Similarity=0.604 Sum_probs=320.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCC--CCCCCeE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPLA 197 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~~ 197 (565)
..+|.+++|++.++++|...||..|+++|+++|+.++.|+|+++.+|||||||++|++|+++.+....... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999887543211 2235789
Q ss_pred EEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-CCCCCCceEEEec
Q 008430 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILD 276 (565)
Q Consensus 198 lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~iIiD 276 (565)
|||+|+++|+.|+++.+.++.... ++.+..++|+.....+...+..+++|||+||++|.+++... .+.+..+++||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999988765 68899999999988887778888999999999999988765 4678889999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCC--CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHH
Q 008430 277 EADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 354 (565)
|||++.+.+|...+..++..++. ..|+++||||++..+......++..+..+...........+.+.+.......+..
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH
Confidence 99999999999999999998876 6799999999999998888889888877666544444455666666666666665
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+.. ....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 247 ~L~~ll~~---------~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ 317 (572)
T PRK04537 247 LLLGLLSR---------SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVA 317 (572)
T ss_pred HHHHHHhc---------ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhh
Confidence 55554432 223469999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
++|||+|+|++||+||.|.+...|+||+||+||.|..|.+++|+.+.+...+..+++.+..
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999888888888776543
No 15
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-60 Score=451.76 Aligned_cols=362 Identities=38% Similarity=0.622 Sum_probs=328.4
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
..+|.+++|+..+++++...||..|+|+|..+||..+-|++++.+|.||||||.+|++|++++++..+.. -...||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999999986532 23568999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-CCCCCCceEEEecch
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~iIiDE~ 278 (565)
||||++|+.|+...+++++... .+.+++..||.+...+...++..+||||+||++|.+++.+. .+.++++.++|+|||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 9999999999999999999886 69999999999999999999999999999999999999875 789999999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec--cchHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS--ENEKVDRL 356 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l 356 (565)
|+|++.+|...+..|+...+.+.|.++||||+...+..++..-+..|+.+.+.........+.+-+..+. .+.....+
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999998877666666666555443 22233444
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccC
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
+..+....... ++|||+.+++.|..|.=.|.-.|+.+.-+||.+++.+|.+.+++|++++++||||||++++
T Consensus 417 l~~l~~rtf~~--------~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 417 LASLITRTFQD--------RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred HHHHHHHhccc--------ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 44444433321 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHH
Q 008430 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 492 (565)
|+||+.|.+||+|..|.+...|+||+||+.|+|+.|.+++|+.+.|...++.+.+.
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998887655
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.1e-59 Score=444.51 Aligned_cols=364 Identities=35% Similarity=0.527 Sum_probs=327.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
...|++..|++..+++++.+||.++|++|+..++.++.|+|+++.|-||+|||++|++|+++.+...+...+ ++..+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 456888899999999999999999999999999999999999999999999999999999999888754444 6888999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-CCCCCCceEEEecch
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~iIiDE~ 278 (565)
|+|||+|+.|++.+.++++..+..+.++.+.||.+.......+..+++|+|+||++|.+++.+. .+...+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988789999999999998888888889999999999999999885 456677899999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCC-CeEEEeCCcCC--CCCceEEEEEEeccchHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVSS--PTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~ 355 (565)
|++++.+|...+..|+..++...|.++||||.+..++.+...-+.. +..+....... ....+.|.+...+...+...
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999988877665 66665544332 23456666777777777777
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCccc
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
+..++.+.... .++||||+|......+++.|+...++|..+||+.++..|..+...|++.+.-||||||+.+
T Consensus 320 l~~~LKk~~~~--------~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA 391 (543)
T KOG0342|consen 320 LYTFLKKNIKR--------YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA 391 (543)
T ss_pred HHHHHHHhcCC--------ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh
Confidence 77777665432 3699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHH
Q 008430 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 492 (565)
||+|+|+|++||+||+|.++.+|+||+||+||.|..|.+++++.+.+..+++.|++.
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999833
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-57 Score=470.07 Aligned_cols=364 Identities=38% Similarity=0.622 Sum_probs=318.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
+|+++++++.+++.|...||.+|+++|.++++.++.|+++++++|||+|||++|++|+++.+...+. ....++++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999998875421 122357899999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh
Q 008430 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+++|+.|+.+.+..+.... ++.+..++|+.....+...+..+++|+|+||++|.+.+....+.+.++++|||||||++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 99999999999999998765 68999999999988888778888999999999999999988888999999999999999
Q ss_pred hcCCCHHHHHHHHHhCCCCCcEEEEEeecCh-HHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccc-hHHHHHHHH
Q 008430 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVDRLLAL 359 (565)
Q Consensus 282 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~ 359 (565)
.+++|...+..+....+...|+++||||++. .+..+...++.++..+...........+.+.+...... .+...+...
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999888999999999985 46777777888888877665555555666665555433 333333332
Q ss_pred HHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCC
Q 008430 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+.. ....++||||+++++|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||
T Consensus 240 ~~~---------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 240 LKQ---------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred Hhc---------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 211 12346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
+|++++||+||+|.+...|+||+||+||.|..|.++++++..|...+..+++.+...
T Consensus 311 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 311 IDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred CCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999888766543
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-58 Score=424.08 Aligned_cols=366 Identities=38% Similarity=0.556 Sum_probs=325.2
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 198 (565)
....|..+|+++++.+.++..|+.+|+|+|+.|||.+++|+|+|-+|.||||||.+|++|+++.+.+.+ .|-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 346799999999999999999999999999999999999999999999999999999999999987754 588899
Q ss_pred EEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC----CCCCCCceEEE
Q 008430 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVI 274 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~----~~~~~~~~~iI 274 (565)
|++||++|+-|+.+.|..+.+.. ++++.+++||...-.+...+..++++||+||+++.+++..+ ...++++.++|
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 99999999999999999887665 79999999999998888899999999999999999888765 34577899999
Q ss_pred ecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCC--CeEEEeCCcCCCCCceEEEEEEeccchH
Q 008430 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVSENEK 352 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k 352 (565)
+|||+++.+..|...+..+...+|...|.++||||+...+.....--... .+.............+.+.+..++...+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999999999999999977665543322222 2223333334445567777888888889
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
..+++..+....... .+.++||+++..+|+.|+-.|.+.++.+..+|+-|++.+|...+.+|+++.++||||||
T Consensus 239 daYLv~~Lr~~~~~~------~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKE------NGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred HHHHHHHHhhhhhcc------CceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 889998888765532 23499999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
++++|+|||.|++||++|.|.++.+|+||+||+.|+|+.|.++.+++..|...+..+++.+.+.
T Consensus 313 VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 313 VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999998887544
No 19
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-57 Score=435.57 Aligned_cols=415 Identities=39% Similarity=0.647 Sum_probs=383.2
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCC
Q 008430 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR 159 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~ 159 (565)
++|..++....++..+.-.++..+++.+.. ...|.|+.+|+.+++.+.+..++.+..|.+|||+|.+++|..+.|+
T Consensus 186 dfy~e~esI~gl~~~d~~~~r~~Lnlrv~g----~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgr 261 (731)
T KOG0339|consen 186 DFYEEHESIEGLTKMDVIDLRLTLNLRVSG----SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGR 261 (731)
T ss_pred ccccChhhhhccccccchhhHhhhcceecc----CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccc
Confidence 778888889999999999999999988864 4568999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
+++-+|-||||||.+|+.|++.+++.++...+++||..||+|||++|+.|++.+++++++.. +++++.++||....++.
T Consensus 262 dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~ 340 (731)
T KOG0339|consen 262 DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQS 340 (731)
T ss_pred cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999998876 79999999999999999
Q ss_pred HHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHH
Q 008430 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 240 ~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
..+..++.||||||++|.+++.....++.++.|+||||+++|.+.||..+++.|..+++++.|.|+||||.+..++.+++
T Consensus 341 k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar 420 (731)
T KOG0339|consen 341 KELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR 420 (731)
T ss_pred HhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEeCCcCCCCCceEEEEEEecc-chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC
Q 008430 320 EYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (565)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~ 398 (565)
.++.+|+.+...........+.|.+..+.+ ..|+..++..|...... +++|+|+..+..+++++..|.-++
T Consensus 421 d~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~--------gkvlifVTKk~~~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 421 DILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSE--------GKVLIFVTKKADAEEIAANLKLKG 492 (731)
T ss_pred HHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccC--------CcEEEEEeccCCHHHHHHHhcccc
Confidence 999999999888888888888888777764 45777777777665432 359999999999999999999999
Q ss_pred CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEe
Q 008430 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 399 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 478 (565)
+.|..+||++.+.+|.+++.+|+.+...||++||+.++|+|||++.+||+||...++..|.||+||+||.|.+|.+++++
T Consensus 493 ~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 493 FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhhcCCcchhhhh
Q 008430 479 TDRDMLLVAQIKKAIVDAESGNAVAFATG 507 (565)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 507 (565)
++.|..+.-.|.+.|......-.-.+...
T Consensus 573 TeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 573 TEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred chhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 99999999999888876655444444443
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-58 Score=445.78 Aligned_cols=387 Identities=44% Similarity=0.702 Sum_probs=350.0
Q ss_pred CCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCC
Q 008430 111 SGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG 190 (565)
Q Consensus 111 ~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~ 190 (565)
......|.++..|.+..+...+..+++..++..|+|+|+.+++.+..|++++++|+||+|||.+|++|++.+++......
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~ 143 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED 143 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCccc
Confidence 34456788888999999999999999999999999999999999999999999999999999999999999999874322
Q ss_pred -----CCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC
Q 008430 191 -----RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT 265 (565)
Q Consensus 191 -----~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~ 265 (565)
....|++||++||+||+.|++++.+++.... .++....+|+.+...+......+|+|+|+||++|.+++..+.+
T Consensus 144 ~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i 222 (482)
T KOG0335|consen 144 RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKI 222 (482)
T ss_pred CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhccee
Confidence 1125899999999999999999999997664 6889999999999888888999999999999999999999999
Q ss_pred CCCCceEEEecchhHhhc-CCCHHHHHHHHHhCCC----CCcEEEEEeecChHHHHHHHHHcCC-CeEEEeCCcCCCCCc
Q 008430 266 SLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPD----KHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVSSPTAN 339 (565)
Q Consensus 266 ~~~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~----~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 339 (565)
.+++++++|+|||++|++ .+|.+.+++|+....- ..|.++||||.+.+++..+..++.+ ...+.+........+
T Consensus 223 ~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~n 302 (482)
T KOG0335|consen 223 SLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSEN 302 (482)
T ss_pred ehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccccc
Confidence 999999999999999999 9999999999988743 6899999999999999988888776 677788888888999
Q ss_pred eEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHH
Q 008430 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 340 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
+.+.+..+...+|...+++.+...............+++|||.+++.|..++..|...++++..+||..++.+|.+.++.
T Consensus 303 i~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 303 ITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALND 382 (482)
T ss_pred ceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHH
Confidence 99999999999999999999986553312222233479999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhhhc
Q 008430 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAES 498 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 498 (565)
|++|.+.+||||+++++|+|+|+|++||+||.|.+..+|+||+||+||.|..|.++.|++..+....+.|.+.+.+...
T Consensus 383 Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q 461 (482)
T KOG0335|consen 383 FRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQ 461 (482)
T ss_pred hhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888876643
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-56 Score=464.91 Aligned_cols=369 Identities=39% Similarity=0.629 Sum_probs=319.1
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCC--CCCCC
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGP 195 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~ 195 (565)
.....|.++++++.+.++|...||..|+++|.++++.+++|+|+++++|||||||++|++|++..+....... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3446789999999999999999999999999999999999999999999999999999999999887653211 11257
Q ss_pred eEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcCCCCCCCceEEE
Q 008430 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (565)
Q Consensus 196 ~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iI 274 (565)
++|||+||++|+.|+.+.++.+.... ++.+..++||.....+...+. ..++|+|+||++|..++..+...++++++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 89999999999999999999987664 578888899887766555553 5689999999999999888888899999999
Q ss_pred ecchhHhhcCCCHHHHHHHHHhCCC--CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchH
Q 008430 275 LDEADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 352 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 352 (565)
|||+|++.+.+|...+..++..++. ..|++++|||++.++......++.++..+...........+.+.+..+...++
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH
Confidence 9999999999999999999988854 56899999999999998999999888887766555444555566666666666
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
...+...+.. ....++||||+++.+++.+++.|...++.+..+||++++++|.++++.|++|+++|||||+
T Consensus 323 ~~~l~~ll~~---------~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 323 YKLLYNLVTQ---------NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred HHHHHHHHHh---------cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 5555544432 1234699999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
++++|||+|++++||++++|.+...|+||+||+||.|..|.+++|+.++|..++..+++.+...
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999988888887776433
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-56 Score=425.80 Aligned_cols=359 Identities=34% Similarity=0.534 Sum_probs=318.9
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 122 ~f~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
.|++++ |++++++++...||...||+|..++|.++.++|+++-++||||||++|++|++..+.......++..-.+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 456554 559999999999999999999999999999999999999999999999999999986654322222346899
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcCC--CCCCCceEEEec
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILD 276 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiD 276 (565)
|+|||||+.|+.+....+...+.++.+.+++||....+....+. .+++|+||||++|.+++.+.. +.+..+.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 99999999999999999998878899999999988877665554 568899999999999998853 455689999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCC--CCCceEEEEEEeccchHHH
Q 008430 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~ 354 (565)
|||++++.||...+..|+..+|...+.=+||||.......+....+.+|+.+.+..... .+..+...+..+...+|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876654 5556777788889999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
.+++.+... ...++|||.+|...+++....|... ...+..+||.|.+..|..+++.|.+-.-.+|+|||
T Consensus 245 ~lv~~L~~~---------~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 245 QLVHLLNNN---------KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred HHHHHHhcc---------ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 999988762 2336999999999999999999875 66889999999999999999999998888999999
Q ss_pred cccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
++++|+|||+|++||++|||.++..|+||+||++|.|+.|.+++|+.+++..++.-+
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877766554
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-58 Score=417.05 Aligned_cols=359 Identities=33% Similarity=0.586 Sum_probs=333.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
..|+++.|.++++..+...||.+|.|+|+++||..+.|+|+|..|..|+|||-+|++|+++.+.... +.-+++++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-----~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-----NVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-----cceeEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999875432 45669999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
||+++||.|..+.++++.+.. ++.+...+||++..+..-.+....+++|+||++++++..++...+++..++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 999999999999999998876 6999999999999888888888999999999999999999988999999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (565)
+++..|...+..++..+|+..|++++|||.|..+..++..++.+|..+.+-. +.....+.+.+.++.+..|+..+-.++
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999987654 344567888999999999988877766
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCc
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
.+.... ..|||||+...++.+++.+.+.|+.|..+|+.|-+++|..++..|++|.++.|||||.+.+|||+
T Consensus 318 skLqIN---------QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi 388 (459)
T KOG0326|consen 318 SKLQIN---------QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI 388 (459)
T ss_pred HHhccc---------ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc
Confidence 654322 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
++|++||+||.|.+.+.|+||+||.||.|..|.++.+++.+|...+.++++.+..
T Consensus 389 qavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 389 QAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred ceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999887743
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.5e-55 Score=450.54 Aligned_cols=360 Identities=36% Similarity=0.591 Sum_probs=310.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
..+|+++++++.+++++...||..|+++|.++++.+++|+++++++|||+|||++|++|++..+... .++.++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999998876432 14678999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
|+|+++|+.|+.+.+..+.... ...+..+.|+.........+..+++|+|+||++|.+.+......++++++|||||+|
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999999887654 567777888888777777777789999999999999998888889999999999999
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch-HHHHHHH
Q 008430 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLA 358 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~ 358 (565)
++.+.++...+..++..+++..|++++|||++.........++.++..+...........+.+.+....... +...+..
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH
Confidence 999988888899999999999999999999999988888888888877665544434444555544444322 2222222
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCC
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+.. ....++||||+++++++.+++.|...++.+..+||++++++|..+++.|++|+++|||||+++++|+
T Consensus 261 ~~~~---------~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~Gi 331 (401)
T PTZ00424 261 LYET---------LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGI 331 (401)
T ss_pred HHHh---------cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCc
Confidence 2211 1234699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
|+|++++||++|+|.+...|+||+||+||.|+.|.+++++++.+...+..+++.+.
T Consensus 332 Dip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 332 DVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred CcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999998888876654
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-56 Score=431.86 Aligned_cols=380 Identities=34% Similarity=0.556 Sum_probs=336.1
Q ss_pred CHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChh
Q 008430 92 NPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGK 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGK 171 (565)
.++.++++...+..-. ...+..|.+++++...++.|+..+|..++.+|+.+|+..+.|+++|..|.|||||
T Consensus 49 Eee~i~~l~~ky~ei~---------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGK 119 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID---------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGK 119 (758)
T ss_pred hHHHHHHHHHHHHHhh---------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCc
Confidence 3456666666553111 2345679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEE
Q 008430 172 TAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 251 (565)
Q Consensus 172 T~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~ 251 (565)
|++|++|+++.+.... .....|--+|||.|||+||.|+++.+.++...+ .+..+++.||.........+ ..++|+||
T Consensus 120 TLAFlvPvlE~L~r~k-Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi-~~mNILVC 196 (758)
T KOG0343|consen 120 TLAFLVPVLEALYRLK-WSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI-SQMNILVC 196 (758)
T ss_pred eeeehHHHHHHHHHcC-CCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh-hcCCeEEe
Confidence 9999999999987642 223357779999999999999999999998876 69999999999877666555 46999999
Q ss_pred ccHHHHHHHHcC-CCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEe
Q 008430 252 TPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (565)
Q Consensus 252 T~~~l~~~l~~~-~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
||++|+.++... .+...++.++|+|||++++++||...+..|+..+++..|.++||||....+..+++.-+.+|..+.+
T Consensus 197 TPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 197 TPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred chHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 999999999875 6788899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC--cCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecC
Q 008430 331 GK--VSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHG 406 (565)
Q Consensus 331 ~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~ 406 (565)
.. ....+.++.+.+..++...|+..|...+..+. ..++|||+.|.+++.++++.|++. |++...+||
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl---------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G 347 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL---------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHG 347 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhcc---------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeecc
Confidence 52 24566788899999999999999998887643 336999999999999999999987 889999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEecccc-HHH
Q 008430 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLL 485 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~ 485 (565)
+|++..|.++..+|.....-||+|||++++|+|+|.|++||++|.|.++.+|+||+||++|.+..|.+++++.+.+ ..+
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 555
Q ss_pred HHHHHHH
Q 008430 486 VAQIKKA 492 (565)
Q Consensus 486 ~~~l~~~ 492 (565)
+..|.+.
T Consensus 428 l~~Lq~k 434 (758)
T KOG0343|consen 428 LKKLQKK 434 (758)
T ss_pred HHHHHHc
Confidence 6666544
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-56 Score=431.03 Aligned_cols=372 Identities=35% Similarity=0.580 Sum_probs=326.9
Q ss_pred CCccCCcccCCCCHHHHHHHH-HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcC-CCCCCCC
Q 008430 117 PAPIESFTDMCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDG 194 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~-~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~ 194 (565)
|-.-..|..++|++.++..|+ .+++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+.... ...+..|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 445678999999999999995 67999999999999999999999999999999999999999999998754 4567789
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-CCCCCCceEE
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFV 273 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~i 273 (565)
+.+|||||||||+.|+++.++++.+.+..+..+.+.||+........++.+++|+|+||++|.+++.+. .+.+..+.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 999999999999999999999999887777889999999999888899999999999999999999875 5778889999
Q ss_pred EecchhHhhcCCCHHHHHHHHHhCC-------------CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCc-------
Q 008430 274 ILDEADRMLDMGFEPQIREVMQNLP-------------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV------- 333 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~~-------------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~------- 333 (565)
|+||+|++++.||...+..|+..+. +..|-+++|||+...+..+...-+.+|..+..+..
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999988772 13578999999999999998888888888762110
Q ss_pred ------------------CCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHH
Q 008430 334 ------------------SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (565)
Q Consensus 334 ------------------~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~ 395 (565)
...+..+.+.+..++..-++..|...+.......... ++|||+.+.+.+++-++.|.
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~q-----k~iVF~S~~d~VeFHy~lf~ 446 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQ-----KMIVFFSCSDSVEFHYSLFS 446 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhc-----eeEEEEechhHHHHHHHHHH
Confidence 1123345566777788888888888887766555443 59999999999999888886
Q ss_pred Hc----------------------CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCC
Q 008430 396 AE----------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 453 (565)
Q Consensus 396 ~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~ 453 (565)
+. +.++..+||+|.+++|..++..|...+-.||+|||++++|+|+|+|++||.||+|.
T Consensus 447 ~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~ 526 (708)
T KOG0348|consen 447 EALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF 526 (708)
T ss_pred hhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC
Confidence 52 34678899999999999999999999989999999999999999999999999999
Q ss_pred CcccceecccccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008430 454 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 454 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 493 (565)
+..+|+||+||+.|+|.+|.+++|+.+.+..+++.++...
T Consensus 527 s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 527 STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988886553
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-55 Score=459.00 Aligned_cols=448 Identities=41% Similarity=0.652 Sum_probs=393.0
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcC-ceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC
Q 008430 80 NNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG 158 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g 158 (565)
++|.....+..++.++.+.|+.... +.+. +...|.|+.+|.+.+++..++..++++||.+|+++|.+|||.++.|
T Consensus 327 nfy~e~~di~~ms~~eV~~yr~~l~~i~v~----g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsG 402 (997)
T KOG0334|consen 327 NFYIEVRDIKRMSAAEVDEYRCELDGIKVK----GKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSG 402 (997)
T ss_pred cccccchhHHHHHHHHHHHhhcCccceeec----cCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccC
Confidence 6666777788888889999987765 4443 3567999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+++|.+|.||+|||++|++|++.+...+++...+.||.+||++||++|+.|+.+.+++++... ++.+++++|+.....+
T Consensus 403 rdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~q 481 (997)
T KOG0334|consen 403 RDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQ 481 (997)
T ss_pred cceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHH
Confidence 999999999999999999999999999988888889999999999999999999999999885 7999999999999999
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCC---ceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHH
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSR---VSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~---~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 315 (565)
...+..++.|+||||+++.+.+..+.-.+.+ +.++|+||+|+|.+.+|.++...|+..+++.+|++++|||.+..+.
T Consensus 482 iaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~ 561 (997)
T KOG0334|consen 482 IAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSME 561 (997)
T ss_pred HHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHH
Confidence 9999999999999999999998876554444 5599999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec-cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHH
Q 008430 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (565)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l 394 (565)
.+....+..|+.+.+........++.+.+..+. ..+|...|.+++..+.. ..++||||...+.|..+.+.|
T Consensus 562 ~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e--------~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 562 ALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE--------DGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred HHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh--------cCCEEEEEcCchHHHHHHHHH
Confidence 999999999999888887888889999998888 88899999998887765 235999999999999999999
Q ss_pred HHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeE
Q 008430 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 474 (565)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 474 (565)
.+.|++|..+||+.++.+|..+++.|++|.+.+||+|+++++|+|++++.+||+||.|..+.+|+||+||+||+|++|.+
T Consensus 634 ~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~A 713 (997)
T KOG0334|consen 634 QKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAA 713 (997)
T ss_pred HhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHHHhhhcCCcchhhhhhHHHHHHHHHHHHhcCcccccccccccCCCccchhHHH
Q 008430 475 TSFYTDRDMLLVAQIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMGPSVNIEDKYR 545 (565)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yr 545 (565)
++|+++.+..+...|.+++...+.... -........-..+ ............ ++.|.+.+..+.|+
T Consensus 714 vtFi~p~q~~~a~dl~~al~~~~~~~P--~~l~~l~~~f~~~--~~~~~s~~~~~G-g~~G~g~~~~~~~~ 779 (997)
T KOG0334|consen 714 VTFITPDQLKYAGDLCKALELSKQPVP--KLLQALSERFKAK--QKAGGSQVHGGG-GFGGKGLKFDEVEE 779 (997)
T ss_pred EEEeChHHhhhHHHHHHHHHhccCCCc--hHHHHHHHHHHhh--hhcccccccccC-cccCCcccccHHHH
Confidence 999999999999999999955554443 1111111111111 111111122222 47788888888888
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-55 Score=424.05 Aligned_cols=388 Identities=31% Similarity=0.489 Sum_probs=317.5
Q ss_pred CCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCC------
Q 008430 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTP------ 188 (565)
Q Consensus 116 ~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~------ 188 (565)
.+..+..|..++++.+++++|...||.+|+++|...||.+..| .|+|..|.||||||++|.+|+++.+.+...
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3556788999999999999999999999999999999999999 599999999999999999999995554321
Q ss_pred --CCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-
Q 008430 189 --VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT- 265 (565)
Q Consensus 189 --~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~- 265 (565)
..++..+..||++|||||+.|+.+.+..+.... ++.+..++||.....+.+.++..++|||+||++|+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 111123349999999999999999999998864 8999999999999999999999999999999999999987654
Q ss_pred --CCCCceEEEecchhHhhcCCCHHHHHHHHHhCC-----CCCcEEEEEeecChHHHHHHHHH-----------------
Q 008430 266 --SLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEIEALAQEY----------------- 321 (565)
Q Consensus 266 --~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~~~~~~~~~~~----------------- 321 (565)
.+.++.++|+||+|+|.+.|+...+..++..+. ...|.+.||||+......-+...
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 567789999999999999999999999988775 35799999999954432222211
Q ss_pred ------cCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhh-------cCCCCCeEEEEecccchHH
Q 008430 322 ------LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEK-------SCHPFPLTIVFVERKTRCD 388 (565)
Q Consensus 322 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~-------~~~~~~~~liF~~s~~~a~ 388 (565)
...|..+... +.......+.+.+... ...++ ....++++|||||++..+.
T Consensus 415 mk~ig~~~kpkiiD~t----------------~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~ryPGrTlVF~NsId~vK 477 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLT----------------PQSATASTLTESLIEC-PPLEKDLYLYYFLTRYPGRTLVFCNSIDCVK 477 (731)
T ss_pred HHHhCccCCCeeEecC----------------cchhHHHHHHHHhhcC-CccccceeEEEEEeecCCceEEEechHHHHH
Confidence 1112111111 1111222222222111 11110 1134568999999999999
Q ss_pred HHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccC
Q 008430 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 389 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~ 468 (565)
.|+-.|+..+++...+|+.|.+++|...+++|++..-.||||||++++|+|||+|+|||||..|.+...|+||.||++|+
T Consensus 478 RLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 478 RLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccccHHHHHHHHHHHHhhhcCCcchhhhhhHHHHHHHHHHHHh
Q 008430 469 GSMGQATSFYTDRDMLLVAQIKKAIVDAESGNAVAFATGKVARRKEREAAAAQ 521 (565)
Q Consensus 469 g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (565)
+..|..++++.+.+...+..|++-+...++...++.....+...+++-..+.+
T Consensus 558 ~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~e 610 (731)
T KOG0347|consen 558 NSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLARE 610 (731)
T ss_pred cCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887766655555555544433
No 29
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-53 Score=400.84 Aligned_cols=367 Identities=33% Similarity=0.540 Sum_probs=328.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCC-CCCCCCeEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALV 199 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~li 199 (565)
.+|++++|.+.+++++.+.|+.+||-+|..|||.+++|+|++..|.||||||.+|++|+++.++..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999987654 3557899999
Q ss_pred EccchhhHHHHHHHHHHHhhcCC-CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC-CCCCCceEEEecc
Q 008430 200 LAPTRELAQQIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDE 277 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~-~~~~~~~~iIiDE 277 (565)
+|||+||+.|++..+.++...+. .+++.-+..+.+.......+...++|||+||+++..++..+. ..++.+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999998876553 566666777777777777788889999999999999998876 6788899999999
Q ss_pred hhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCC-CCceEEEEEEeccchHHHHH
Q 008430 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l 356 (565)
||.++.-||...+..+..++|+..|.++||||+..++..+-+.++.+|+.+.+...+.+ ...+.+....+...+|.-.+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999888766544 45677888888888887777
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc---
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV--- 433 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~--- 433 (565)
..++.-....+ +.|||+|+++.|..|.-.|.+.|++.+++.|.++..-|..++++|..|-.+++||||.
T Consensus 259 yallKL~LI~g--------KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 259 YALLKLRLIRG--------KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred HHHHHHHHhcC--------ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 77666554432 5999999999999999999999999999999999999999999999999999999991
Q ss_pred --------------------------------ccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc
Q 008430 434 --------------------------------ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 434 --------------------------------~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
.++|||+.+|.+|++||.|.+...|+||+||++|++++|.++.|+.+.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 348999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHh
Q 008430 482 DMLLVAQIKKAIVD 495 (565)
Q Consensus 482 ~~~~~~~l~~~~~~ 495 (565)
+......++..+.+
T Consensus 411 e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 411 EEFGKESLESILKD 424 (569)
T ss_pred HHhhhhHHHHHHhh
Confidence 88766666655544
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.7e-50 Score=431.51 Aligned_cols=349 Identities=24% Similarity=0.282 Sum_probs=268.7
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 127 ~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
.+++.+.++|...|+.+|+++|.++++.+++|+|+++.+|||||||++|++|+++.+... .+.++|||+|+++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999988763 36789999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC----CCCCCCceEEEecchhHhh
Q 008430 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRML 282 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~----~~~~~~~~~iIiDE~H~~~ 282 (565)
+.|+.+.++++. ..++.+..+.|+..... ...+..+++|+|+||++|...+... ...++++++|||||+|.+.
T Consensus 94 a~q~~~~l~~l~--~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 94 AADQLRAVRELT--LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHHHHHhc--cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999999999986 23678888888877543 3455667999999999997543321 1236789999999999986
Q ss_pred cCCCHHHHHHH-------HHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec-----c-
Q 008430 283 DMGFEPQIREV-------MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-----E- 349 (565)
Q Consensus 283 ~~~~~~~~~~i-------~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 349 (565)
+ .|+..+..+ ....+.+.|++++|||++...+ .+..++..+..+. .....+.......+.... .
T Consensus 171 g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 G-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCCcCceEEEEecCCccccccc
Confidence 5 355544333 3444567899999999987754 5667777775543 222222222211111110 0
Q ss_pred ------chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--------CCceeEecCCCCHHHHHH
Q 008430 350 ------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRES 415 (565)
Q Consensus 350 ------~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~ 415 (565)
..........+...... ..++||||++++.|+.++..|.+. +..+..+||++++++|.+
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~-------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ 320 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE-------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRE 320 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC-------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHH
Confidence 00011112222221111 236999999999999999998764 567889999999999999
Q ss_pred HHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEecc--ccHHHHHHHHHHH
Q 008430 416 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD--RDMLLVAQIKKAI 493 (565)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~--~~~~~~~~l~~~~ 493 (565)
++++|++|++++||||+++++|||+|++++||+++.|.+...|+||+||+||.|+.|.+++++.. .|..++...++.+
T Consensus 321 ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 321 LERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999864 4555566555554
Q ss_pred H
Q 008430 494 V 494 (565)
Q Consensus 494 ~ 494 (565)
.
T Consensus 401 ~ 401 (742)
T TIGR03817 401 D 401 (742)
T ss_pred c
Confidence 4
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-49 Score=367.30 Aligned_cols=361 Identities=31% Similarity=0.504 Sum_probs=311.0
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 194 (565)
-....+|+++.|.|++++.+..++|.+|+.+|+.|+|.++.. ++.|..+..|+|||.+|.+.++.++.... .-
T Consensus 86 lyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-----~~ 160 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-----VV 160 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-----cC
Confidence 355899999999999999999999999999999999999965 68999999999999999999988765432 35
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-CCCCCCCceEE
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFV 273 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-~~~~~~~~~~i 273 (565)
|.++.|+|+++|+.|..+.+.+..+.. +++..+...+.....-. .-..+|+|+||+.+.+++.. ..+.+..+.++
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 679999999999999999999998775 67777776665211110 01267999999999998877 67788899999
Q ss_pred EecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEecc-ch
Q 008430 274 ILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NE 351 (565)
Q Consensus 274 IiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 351 (565)
|+|||+.|.+. ||.+.-.+|+..+++++|++++|||....+..++.....++..+.+........++.+.+..+.. .+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999999864 68888899999999999999999999999999999999999999988888888889998888865 45
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 008430 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
|...+.++. .... .+..||||.++..|..++..+.+.|..+..+||++...+|..++++|+.|+-+|||+|
T Consensus 317 K~~~l~~ly-g~~t--------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 317 KYQALVNLY-GLLT--------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred HHHHHHHHH-hhhh--------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEe
Confidence 666665532 2221 2248999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCccCccEEEEcCCCC------CcccceecccccccCCCceeEEEEeccc-cHHHHHHHHHHHHh
Q 008430 432 DVASRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVD 495 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~ 495 (565)
++++||||++.|++||+||.|. ++..|+||+||+||.|++|.++.+++.. ++..+..|++.+..
T Consensus 388 nV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred chhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 9999999999999999999985 6789999999999999999999999875 66677777777643
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-49 Score=372.23 Aligned_cols=357 Identities=38% Similarity=0.642 Sum_probs=324.7
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
..+|++++|++++++.+..+||.+|+.+|+.|+..+..|.|+++.+.+|+|||.+|.+++++.+.... ....+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-----ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-----KETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch-----HHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999988753321 3456999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecch
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 278 (565)
++|+++|+.|.......+.... +..+..+.||.........+ ...++|+++||+++++++....+..+.+.+.|+||+
T Consensus 100 laPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred hcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 9999999999998888877654 67888888888877544444 445899999999999999998888889999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
+.++..+|...+..|+.+++++.|++++|||.|.++....+.++.+|..+...........+.+.+..+..++|...+.+
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999998888777888899999888888887777
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCC
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
+... .. ..+||||+++.+..+...|...++.+..+|++|.+.+|..+++.|+.|..+|||+|+.+++|+
T Consensus 259 l~~~----~~-------q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 259 LYRR----VT-------QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred HHHh----hh-------cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 7661 11 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008430 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 493 (565)
|+..+..||+|+.|.....|+||+||+||.|.+|.++.++.+.|...++++++.+
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 9999999999999999999999999999999999999999999999988887554
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-48 Score=405.72 Aligned_cols=325 Identities=20% Similarity=0.331 Sum_probs=254.1
Q ss_pred HHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
..+|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.++.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999998753 45699999999999999988876
Q ss_pred HhhcCCCceEEEEECCCCHHHHHH----HHhCCCcEEEEccHHHHHHH-HcCCC-CCCCceEEEecchhHhhcCC--CHH
Q 008430 217 LSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHL-QQGNT-SLSRVSFVILDEADRMLDMG--FEP 288 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~ilv~T~~~l~~~l-~~~~~-~~~~~~~iIiDE~H~~~~~~--~~~ 288 (565)
. ++....+.++....+... ...+.++|+++||+++.... ....+ ...++++|||||||++.+++ |..
T Consensus 74 ~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 74 S-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred c-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 4 566777777776553322 23456899999999975322 11112 45689999999999999876 566
Q ss_pred HHHHH---HHhCCCCCcEEEEEeecChHHHHHHHHHcC--CCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008430 289 QIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 289 ~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 363 (565)
.+..+ ...+ +..+++++|||++......+...+. .+..+... . ...++...+... .......+...+..
T Consensus 149 ~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~--~r~nl~~~v~~~-~~~~~~~l~~~l~~- 222 (470)
T TIGR00614 149 DYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-F--DRPNLYYEVRRK-TPKILEDLLRFIRK- 222 (470)
T ss_pred HHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-C--CCCCcEEEEEeC-CccHHHHHHHHHHH-
Confidence 65543 3444 4678999999999887766665543 33333221 1 122332222211 11233344444332
Q ss_pred HHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCc
Q 008430 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 364 ~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v 443 (565)
..++..+||||+++++|+.+++.|...|+.+..+||++++++|..+++.|++|+++|||||+++++|||+|+|
T Consensus 223 -------~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V 295 (470)
T TIGR00614 223 -------EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDV 295 (470)
T ss_pred -------hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccc
Confidence 1223357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHH
Q 008430 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 490 (565)
++||++++|.|...|+||+||+||.|.+|.+++++...|...++.+.
T Consensus 296 ~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 296 RFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred eEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999999999999999887776654
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-49 Score=391.05 Aligned_cols=358 Identities=29% Similarity=0.480 Sum_probs=313.2
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
+.....|+++-|..+++..|+..+|..|+++|..|||.++.+-|+||.+..|+|||++|.+.+++.+.. +...+.
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~~q 95 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSHIQ 95 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCcce
Confidence 566788999999999999999999999999999999999999999999999999999998777776543 235778
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
.+||+|||+|+.|+.+++.+++..+.++++..++||+........+ +.++|+|+||+++..+...+.+++.+++++|+|
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 9999999999999999999999988899999999999877665555 458899999999999999999999999999999
Q ss_pred chhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHH
Q 008430 277 EADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 277 E~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 355 (565)
|||.+.+ ..|...+..|+..+|...|++.+|||-|..+...+..++.+|..+...........+.+.+...........
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsve 254 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVE 254 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHH
Confidence 9999998 569999999999999999999999999999999999999999999988877777778877766654422111
Q ss_pred HHH-HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 356 LLA-LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 356 l~~-~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+. .+...... ...-+...+||||+....|+.++.+|...|++|..+.|.|++.+|..+++.++.-.++|||+||+.
T Consensus 255 emrlklq~L~~v--f~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLt 332 (980)
T KOG4284|consen 255 EMRLKLQKLTHV--FKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLT 332 (980)
T ss_pred HHHHHHHHHHHH--HhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchh
Confidence 111 11111100 011233359999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEecccc
Q 008430 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 482 (565)
++|||-|+|++||++|+|.+...|.||+|||||.|..|.+++|+....
T Consensus 333 aRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 333 ARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred hccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999999999999999999999999997653
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-49 Score=372.97 Aligned_cols=360 Identities=38% Similarity=0.553 Sum_probs=332.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
-..|..++|...+++++.+.||..|+|+|+..+|.++++++++..+-||+|||.+|++|+++.+.... ..|.++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 35799999999999999999999999999999999999999999999999999999999999987653 24788999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
+.|+++|+.|..+.++.+.... +++..+++||....++...+..+.|||++||+++....-.-.+.+..+.|||+||++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred ccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999998775 689999999999999999999999999999999987766556788899999999999
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008430 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (565)
++.++||..++.+++..++...|.++||||+|..+-.+.+..+.+|..+.+.-.......+...+..+...+|..+|+..
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877777777777778888889999888888
Q ss_pred HHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCC
Q 008430 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+..... ..+++|||.+..+++.+...|+..|+.+..++|.+++..|..-+.+|..++..+||.||++++|+|
T Consensus 255 l~~~~~--------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 255 LGGRIK--------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred Hhcccc--------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 776543 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHH
Q 008430 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 492 (565)
+|-.+.||+||.|.+...|+||+||+.|+|..|.+|.++.+.+..++-.|.-.
T Consensus 327 iplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 327 IPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred CccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999998888876543
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.9e-48 Score=413.89 Aligned_cols=337 Identities=21% Similarity=0.310 Sum_probs=257.6
Q ss_pred CCCCHHHHHHH-HHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 126 MCLHPSIMKDI-EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 126 ~~l~~~i~~~l-~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
++....+...+ ..+|+..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++.+|||+|++
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLi 510 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLV 510 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHH
Confidence 34444555555 4579999999999999999999999999999999999999999853 45699999999
Q ss_pred hhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh------CCCcEEEEccHHHHH--HHHcC--CC-CCCCceEE
Q 008430 205 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR------GGVSIVVATPGRFLD--HLQQG--NT-SLSRVSFV 273 (565)
Q Consensus 205 ~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~ilv~T~~~l~~--~l~~~--~~-~~~~~~~i 273 (565)
+|+.++...+... ++....+.++....++...+. +.++|||+||++|.. .+... .+ ....+.+|
T Consensus 511 SLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9998665555542 678888999888766554432 568999999999852 11111 11 23458899
Q ss_pred EecchhHhhcCC--CHHHHHHH--HHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEecc
Q 008430 274 ILDEADRMLDMG--FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE 349 (565)
Q Consensus 274 IiDE~H~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (565)
||||||++.++| |.+.|..+ +....+..+++++|||++..+...+...+.....+.+.. .....++...+ ...
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~RpNL~y~V--v~k 662 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFNRPNLWYSV--VPK 662 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccCccceEEEE--ecc
Confidence 999999999987 77777653 333334678999999999988877666554322211111 11223332222 222
Q ss_pred chH-HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEE
Q 008430 350 NEK-VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 350 ~~k-~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
..+ ...+...+... ....++||||.+++.|+.+++.|...|+.+..+||+|++++|..++++|.+|+++||
T Consensus 663 ~kk~le~L~~~I~~~--------~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 663 TKKCLEDIDKFIKEN--------HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred chhHHHHHHHHHHhc--------ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 211 22333332211 122358999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 429 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
|||+++++|||+|+|++||+|++|.++..|+|++|||||+|..|.|++||...|....+.+
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876655544
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=374.77 Aligned_cols=365 Identities=28% Similarity=0.408 Sum_probs=287.7
Q ss_pred CCccCCcccCCCCHHHH----------HHHHHCCCCCCCHHHHHHHHhHh---------CCCCEEEEccCCChhHHHHHH
Q 008430 117 PAPIESFTDMCLHPSIM----------KDIEFHEYTRPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTI 177 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~----------~~l~~~~~~~~~~~Q~~~l~~l~---------~g~~~li~a~TGsGKT~~~~l 177 (565)
+.....|+.++++..+. +.+.++++..+.|+|..++++++ .++|++|.||||||||++|.+
T Consensus 123 ~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~i 202 (620)
T KOG0350|consen 123 NNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVI 202 (620)
T ss_pred CCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehh
Confidence 34455666777665444 44889999999999999999996 257899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCC-----CcEEEEc
Q 008430 178 PMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-----VSIVVAT 252 (565)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~ilv~T 252 (565)
|+++.+...+. +.-|+|||+|+++|+.|++++|.++.... ++.++.+.|..+.......+.+. .||+|+|
T Consensus 203 PIVQ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 203 PIVQLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHHHHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 99998766422 34689999999999999999999999875 78899999988888777777543 4899999
Q ss_pred cHHHHHHHHc-CCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC--------------------------------
Q 008430 253 PGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-------------------------------- 299 (565)
Q Consensus 253 ~~~l~~~l~~-~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~-------------------------------- 299 (565)
|++|.+++.. ..+.+++++|+||||||++++..|..++..++.+...
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999999985 5789999999999999999988877777665543321
Q ss_pred --CCcEEEEEeecChHHHHHHHHHcCCCeEEEeC----CcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCC
Q 008430 300 --KHQTLLFSATMPVEIEALAQEYLTDPVQVKVG----KVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 373 (565)
Q Consensus 300 --~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~ 373 (565)
..+.+.+|||+......+...-+..|-..... .....+..+.+.........+...+...+....
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k--------- 428 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK--------- 428 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh---------
Confidence 12356678887666555555555555332222 111223334444444444455555555554433
Q ss_pred CCeEEEEecccchHHHHHHHHH----HcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEc
Q 008430 374 FPLTIVFVERKTRCDEVSEALV----AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
..++|+|+++...+..++..|+ .....+-.++|.++.+.|...+++|+.|+++||||+|+++||+|+.+++.||+|
T Consensus 429 ~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 429 LNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINY 508 (620)
T ss_pred cceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeec
Confidence 2359999999999999999887 235567779999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 450 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 450 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
|+|.+...|+||+||++|+|+.|.++++.+..+...+..+.+....
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999999999999999988877776554433
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-46 Score=400.07 Aligned_cols=326 Identities=22% Similarity=0.340 Sum_probs=253.1
Q ss_pred HHHHH-HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 133 MKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 133 ~~~l~-~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
.+.|+ .+|+..++|+|+++++.+++|+++++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHHH
Confidence 34443 469999999999999999999999999999999999999998753 446999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC--
Q 008430 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-- 285 (565)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-- 285 (565)
+.++.. ++....+.++......... ..+..+++++||+++........+...++++|||||||++.+++
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 988874 4666677776665543322 23568999999999864322223444578999999999999876
Q ss_pred CHHHHHHH---HHhCCCCCcEEEEEeecChHHHHHHHHHc--CCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008430 286 FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 286 ~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (565)
|.+.+..+ ...+ +..+++++|||++......+...+ .++.... .... .+++... ..........+...+
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~--r~nl~~~--v~~~~~~~~~l~~~l 231 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD--RPNIRYT--LVEKFKPLDQLMRYV 231 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCC--CCcceee--eeeccchHHHHHHHH
Confidence 56555443 3444 467899999999988765554443 3343322 2111 2222211 122222333343333
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCc
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
.. ..+.++||||+++++|+.+++.|.+.|+.+..+||++++++|..+++.|++|+++|||||+++++|||+
T Consensus 232 ~~---------~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 232 QE---------QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred Hh---------cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 21 223469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
|+|++||++++|.|...|+|++|||||.|.+|.+++++++.|...++.+
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887766554
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-47 Score=371.26 Aligned_cols=379 Identities=34% Similarity=0.531 Sum_probs=316.9
Q ss_pred CCCCCCccCCccc----CCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCC
Q 008430 113 SVPAPAPIESFTD----MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP 188 (565)
Q Consensus 113 ~~~~~~~~~~f~~----~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~ 188 (565)
+...|+++.+|.+ +..++.+++.+...+|..|+|+|++|+|.++.+++++.|+|||+|||++|.+|++.++.....
T Consensus 124 G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~ 203 (593)
T KOG0344|consen 124 GFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ 203 (593)
T ss_pred CCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc
Confidence 3566899999998 467889999999999999999999999999999999999999999999999999999877543
Q ss_pred CCCCCCCeEEEEccchhhHHHHHHHHHHHh--hcCCCceEEEEECCCCHH-HHHHHHhCCCcEEEEccHHHHHHHHcCC-
Q 008430 189 VGRGDGPLALVLAPTRELAQQIEKEVKALS--RSLDSFKTAIVVGGTNIA-EQRSELRGGVSIVVATPGRFLDHLQQGN- 264 (565)
Q Consensus 189 ~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ilv~T~~~l~~~l~~~~- 264 (565)
.....|-+++|+.|+++|+.|++.++.++. ... .+....+....... .........++|+++||-++...+....
T Consensus 204 ~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~ 282 (593)
T KOG0344|consen 204 EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL 282 (593)
T ss_pred ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc
Confidence 334468899999999999999999999997 322 23333333222111 1111222458999999999998888765
Q ss_pred -CCCCCceEEEecchhHhhcC-CCHHHHHHHHHhCC-CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceE
Q 008430 265 -TSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI 341 (565)
Q Consensus 265 -~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (565)
..+..+.++|+||++++.+. .|..++..|+.... +...+-+||||.+..+++++.....++..+.++........+.
T Consensus 283 ~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~ 362 (593)
T KOG0344|consen 283 NIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVD 362 (593)
T ss_pred cchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhh
Confidence 67888999999999999988 78888888877664 4556778999999999999999999999888887766666677
Q ss_pred EEEEEec-cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHH-HHcCCceeEecCCCCHHHHHHHHHH
Q 008430 342 QILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL-VAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 342 ~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
+.+.++. ...|.-.+.+.+..- -.+|+|||+.+.+.|..|...| --.++++..+||+.++.+|++.+++
T Consensus 363 QelvF~gse~~K~lA~rq~v~~g---------~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 363 QELVFCGSEKGKLLALRQLVASG---------FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhheeeecchhHHHHHHHHHhcc---------CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHH
Confidence 6666654 445655555555432 3457999999999999999999 6779999999999999999999999
Q ss_pred hhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhhhcC
Q 008430 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESG 499 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 499 (565)
|+.|++.|||||+++++|+|+-++++||+||.|.+...|+||+||+||+|+.|.+++||+++|...++-+...+.. .+
T Consensus 434 FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~--sG 511 (593)
T KOG0344|consen 434 FRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ--SG 511 (593)
T ss_pred HhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH--cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888776 45
Q ss_pred Ccch
Q 008430 500 NAVA 503 (565)
Q Consensus 500 ~~~~ 503 (565)
..++
T Consensus 512 ~evp 515 (593)
T KOG0344|consen 512 CEVP 515 (593)
T ss_pred Ccch
Confidence 5444
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-45 Score=394.58 Aligned_cols=321 Identities=24% Similarity=0.376 Sum_probs=256.1
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+||.+++++|.++++.++.|+++++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.++..
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999999999999998743 446899999999999999988874
Q ss_pred hhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC--CHHHHH
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~ 291 (565)
++.+..+.++....+.... ..+..+|+++||+++........+...++++|||||||++.+++ |.+.+.
T Consensus 77 -----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 -----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 4667778887766554332 34678999999999965443333455689999999999998865 666665
Q ss_pred HH---HHhCCCCCcEEEEEeecChHHHHHHHHHcC--CCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHh
Q 008430 292 EV---MQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 366 (565)
Q Consensus 292 ~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 366 (565)
.+ ...++. .+++++|||++......+...+. .+..+. .. ....++... ......+...+.+.+...
T Consensus 152 ~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl~~~--v~~~~~~~~~l~~~l~~~--- 222 (591)
T TIGR01389 152 RLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNLRFS--VVKKNNKQKFLLDYLKKH--- 222 (591)
T ss_pred HHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCcEEE--EEeCCCHHHHHHHHHHhc---
Confidence 55 344443 45999999999888777776654 222222 11 112233222 222334444555544321
Q ss_pred hhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEE
Q 008430 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (565)
Q Consensus 367 ~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~V 446 (565)
.+.++||||++++.++.+++.|...|+++..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++|
T Consensus 223 ------~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 223 ------RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred ------CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 13469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 447 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 447 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
|++++|.|...|+|++|||||.|..|.++++++..|....+.+
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999999998887665554
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.3e-44 Score=398.22 Aligned_cols=344 Identities=22% Similarity=0.278 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCC-CCCCCeEEEEccchhh
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVLAPTREL 206 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~~lil~P~~~L 206 (565)
+++.+.+.+.. ++..|+|+|++|++.+++|++++++||||+|||++|.+|++..+....... ..++.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 55666555544 788999999999999999999999999999999999999999887542211 1346789999999999
Q ss_pred HHHHHHHHHHH-------h----hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC--CCCCceEE
Q 008430 207 AQQIEKEVKAL-------S----RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFV 273 (565)
Q Consensus 207 ~~Q~~~~~~~~-------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~--~~~~~~~i 273 (565)
+.|+++.+... + ...+++.+...+|+....+....+...++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 99998866532 2 12225788899999988887777778899999999999877755433 46789999
Q ss_pred EecchhHhhcCCCHHHHH----HHHHhCCCCCcEEEEEeecChHHHHHHHHHcC-------CCeEEEeCCcCCCCCceEE
Q 008430 274 ILDEADRMLDMGFEPQIR----EVMQNLPDKHQTLLFSATMPVEIEALAQEYLT-------DPVQVKVGKVSSPTANVIQ 342 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~----~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 342 (565)
||||+|.+.+..++..+. ++....+...|++++|||+++. ......... .+..+..... .....+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARF-VKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCC-CccceEEE
Confidence 999999998766555443 3334444678999999999752 222222211 1112211110 00011110
Q ss_pred E-----EEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc------CCceeEecCCCCHH
Q 008430 343 I-----LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQS 411 (565)
Q Consensus 343 ~-----~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~------~~~~~~~~~~~~~~ 411 (565)
. ............+...+..... ...++||||+++..|+.++..|.+. +..+..+||+++++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~-------~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK-------EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE 327 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh-------cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH
Confidence 0 0001111122233333333221 1235999999999999999999873 46799999999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCC-CceeEEEEeccc
Q 008430 412 DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG-SMGQATSFYTDR 481 (565)
Q Consensus 412 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~ 481 (565)
+|..+++.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++....
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999864 444454444433
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-45 Score=401.90 Aligned_cols=338 Identities=22% Similarity=0.310 Sum_probs=256.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHh-HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~-l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.|+++++++.+.+.+...|+.+|+|+|.+|++. +..|+++++++|||+|||++|.++++..+.. ++++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 478889999999999999999999999999998 7789999999999999999999999988742 6679999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|.++.|+++.. . ++++..++|+..... .....++|+|+||+++..++......++++++|||||+|.
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 9999999999999997643 2 678888999865433 2235689999999999888876655678899999999999
Q ss_pred hhcCCCHHHHHHHHHhC---CCCCcEEEEEeecChHHHHHHHHHcCCC--------eEEEeCCcCCCCCceEEEEEEecc
Q 008430 281 MLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDP--------VQVKVGKVSSPTANVIQILEKVSE 349 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 349 (565)
+.+.+++..++.++..+ .+..|++++|||+++. . .+..++... ..+..................+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~-~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-D-ELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-H-HHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 99888888887775544 4678999999999753 2 223333321 111000000000000000000110
Q ss_pred chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC-------------------------------
Q 008430 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------------- 398 (565)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~------------------------------- 398 (565)
..+ ......+..... .++++||||+++++|+.+++.|....
T Consensus 227 ~~~-~~~~~~~~~~~~-------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 227 PSK-DDTLNLVLDTLE-------EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred ccc-hHHHHHHHHHHH-------cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 011 112222222111 23469999999999999888886431
Q ss_pred -----CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cC-----CCCCcccceecccc
Q 008430 399 -----LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-----LPKTVEDYVHRIGR 464 (565)
Q Consensus 399 -----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~-----~~~s~~~~~Q~~GR 464 (565)
..+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 35788999999999999999999999999999999999999999999987 65 57789999999999
Q ss_pred cccCCCc--eeEEEEecccc
Q 008430 465 TGRGGSM--GQATSFYTDRD 482 (565)
Q Consensus 465 ~~R~g~~--g~~~~~~~~~~ 482 (565)
|||.|.. |.+++++...+
T Consensus 379 AGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCCCCceEEEEecCch
Confidence 9999865 99999987643
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-44 Score=389.90 Aligned_cols=337 Identities=21% Similarity=0.304 Sum_probs=257.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHh-HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~-l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.|+++++++.+.+.++..|+.+|+|+|.++++. +..|+++++++|||+|||++|.+|++..+.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 467889999999999999999999999999986 7899999999999999999999999988765 26689999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|+++.|+.+.. . ++.+..++|+...... ..+.++|+|+||+++..++......++++++|||||+|.
T Consensus 75 ~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred eChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc
Confidence 9999999999999988643 2 6888999998764332 235689999999999888876656678999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCc---eE-EEEEEeccch--H-H
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTAN---VI-QILEKVSENE--K-V 353 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~--k-~ 353 (565)
+.+.+++..+..++..+....|++++|||+++. ..+ ..++....... ...+... +. +......... + .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~l-a~wl~~~~~~~---~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EEL-AEWLNAELVVS---DWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHH-HHHhCCccccC---CCCCCcceeeEecCCeeeccCcchhcch
Confidence 998888999999999998889999999999753 333 34544322111 0111110 00 0011111110 1 1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc---------------------------------CCc
Q 008430 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------------------------------GLH 400 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~---------------------------------~~~ 400 (565)
..+...+.+... .+.++||||++++.|+.++..|... ...
T Consensus 225 ~~~~~~~~~~i~-------~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 297 (720)
T PRK00254 225 NSWESLVYDAVK-------KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGG 297 (720)
T ss_pred HHHHHHHHHHHH-------hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhC
Confidence 111222222111 1336999999999998877666421 235
Q ss_pred eeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE-------cCCCC-CcccceecccccccCC--C
Q 008430 401 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-------LDLPK-TVEDYVHRIGRTGRGG--S 470 (565)
Q Consensus 401 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~-------~~~~~-s~~~~~Q~~GR~~R~g--~ 470 (565)
+..+|+++++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.+. +..+|.||+|||||.| .
T Consensus 298 v~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 298 VAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 889999999999999999999999999999999999999999999984 33332 4568999999999965 5
Q ss_pred ceeEEEEecccc
Q 008430 471 MGQATSFYTDRD 482 (565)
Q Consensus 471 ~g~~~~~~~~~~ 482 (565)
.|.+++++...+
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 699999987654
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.6e-42 Score=377.14 Aligned_cols=321 Identities=19% Similarity=0.223 Sum_probs=246.8
Q ss_pred CCHHHHHHHH-HCCCCCCCHHHHHHHHhHhCC------CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 128 LHPSIMKDIE-FHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 128 l~~~i~~~l~-~~~~~~~~~~Q~~~l~~l~~g------~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
......+.+. ..+| +||+.|.+|++.++++ .+.|++|+||+|||.+|+++++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 3345555554 4577 5999999999999875 689999999999999999998877643 6789999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
+||++|+.|.++.|++++... ++.+..++|+....+....+ .+.++|||+||..+ ...+.+.++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVID 580 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIID 580 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEee
Confidence 999999999999999998765 57888888887655443322 34699999999533 245678899999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHH
Q 008430 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 356 (565)
|+|++. ......+..++.+.++++|||||.+...........++..+...... ...+...+..... ..+
T Consensus 581 Eahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~----~~i 649 (926)
T TIGR00580 581 EEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP----ELV 649 (926)
T ss_pred cccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH----HHH
Confidence 999853 33455566677788999999998776554444444455444432211 1223332222211 122
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
...+..... .++++++||+++++++.+++.|.+. ++++..+||+|++++|+.++++|++|+++|||||+++
T Consensus 650 ~~~i~~el~-------~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ii 722 (926)
T TIGR00580 650 REAIRRELL-------RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTII 722 (926)
T ss_pred HHHHHHHHH-------cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 222222221 1346999999999999999999985 7899999999999999999999999999999999999
Q ss_pred cCCCCccCccEEEEcCCCC-CcccceecccccccCCCceeEEEEeccc
Q 008430 435 SRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
++|+|+|++++||+++.+. +...|.||+||+||.|+.|.|++++...
T Consensus 723 e~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 723 ETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred hcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999864 6778999999999999999999998654
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.4e-41 Score=377.60 Aligned_cols=315 Identities=18% Similarity=0.188 Sum_probs=245.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHhHhCC------CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 134 KDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~l~~l~~g------~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
+.....+| +||+.|.+|++.++.+ .++|++|+||+|||.+|+.+++..+. ++++++||+||++|+
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHH
Confidence 33456677 7999999999999876 78999999999999999777765543 378899999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh----CCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc
Q 008430 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
.|+++.|++.+... ++.+..++|+....++...+. +.++|||+||+.+. ..+.+.++++|||||+|++.
T Consensus 663 ~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG- 735 (1147)
T PRK10689 663 QQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG- 735 (1147)
T ss_pred HHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc-
Confidence 99999999987654 577888888887766654432 57999999997542 34567789999999999973
Q ss_pred CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008430 284 MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 284 ~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 363 (565)
+. ....+..++.+.|+++|||||.+.........+.++..+...... ...+...............+...+
T Consensus 736 --~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el--- 806 (1147)
T PRK10689 736 --VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI--- 806 (1147)
T ss_pred --hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH---
Confidence 22 245566777889999999999887776666677777666543222 122333333222211111221111
Q ss_pred HHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCcc
Q 008430 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 441 (565)
Q Consensus 364 ~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip 441 (565)
. .+++++|||++++.++.+++.|.+. +.++..+||+|++++|.+++.+|++|+++|||||+++++|+|+|
T Consensus 807 -~-------r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 807 -L-------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred -h-------cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccc
Confidence 1 1246999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCC-CCcccceecccccccCCCceeEEEEeccc
Q 008430 442 GVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 442 ~v~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
++++||+.+.. .+...|+|++||+||.|+.|.|++++...
T Consensus 879 ~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 99999966553 35677999999999999999999988653
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=357.30 Aligned_cols=342 Identities=24% Similarity=0.310 Sum_probs=268.0
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
|++.+.+.+... |..||+.|.+|++.+..|+|+||+||||||||+++.+|++..+..........+-.+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 778888888877 9999999999999999999999999999999999999999999987422233567899999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC--CCCCCceEEEecchhHhhcCC
Q 008430 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+.+...+..++... ++.+...+|++...+......+.+||+++|||+|.-++.... -.+.++.+|||||.|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999998875 788899999999998888888999999999999976665432 357789999999999988665
Q ss_pred CHHH----HHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCC--CeEEEeCCcCCCCCceEEEEEEec---cchHHHHH
Q 008430 286 FEPQ----IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVS---ENEKVDRL 356 (565)
Q Consensus 286 ~~~~----~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l 356 (565)
.+.+ +.++....+ ++|.+|+|||..+ .....+.+... +..+....... ..++.-...... .+.....+
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHHH
Confidence 4433 344444444 8999999999973 33344434333 33333222211 111111111000 01222334
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC-CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCccc
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
+..+.+...... .+|||+||+..|+.++..|++.+ ..+..+||.++.+.|..+.++|++|+++++|||+.++
T Consensus 243 ~~~i~~~v~~~~-------ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE 315 (814)
T COG1201 243 YERIAELVKKHR-------TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE 315 (814)
T ss_pred HHHHHHHHhhcC-------cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchh
Confidence 444443332222 39999999999999999999987 8899999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEcCCCCCcccceeccccccc-CCCceeEEEEeccc
Q 008430 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGR-GGSMGQATSFYTDR 481 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R-~g~~g~~~~~~~~~ 481 (565)
-|||+.+++.||++..|.++..++||+||+|+ .|....++++..+.
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 99999999999999999999999999999996 45556666666653
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-42 Score=373.53 Aligned_cols=335 Identities=18% Similarity=0.240 Sum_probs=247.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
.|+++++++.+++.+...++. |+++|.++++.+..|+++++++|||+|||+++.++++..+.. ++++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999998886 999999999999999999999999999999999988877653 56799999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh
Q 008430 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+++|+.|.++.++++.. . +..+...+|+...... ....++|+|+||+++..++..+...+.++++|||||+|++
T Consensus 73 P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 73 PLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred chHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 999999999999998643 2 5778888887654321 2246899999999998888776666889999999999999
Q ss_pred hcCCCHHHHHHHHH---hCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEE---EEeccchH-HH
Q 008430 282 LDMGFEPQIREVMQ---NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL---EKVSENEK-VD 354 (565)
Q Consensus 282 ~~~~~~~~~~~i~~---~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k-~~ 354 (565)
.+.+++..+..++. ..++..|++++|||++.. .. +..++..... ... ....+....... .......+ ..
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~-la~wl~~~~~-~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NE-LAQWLNASLI-KSN-FRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HH-HHHHhCCCcc-CCC-CCCCCeEEEEEecCeeeecccccccc
Confidence 88877777776654 445678999999999753 22 3334432211 100 000000000000 00111111 01
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC-------------------------CceeEecCCCC
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-------------------------LHAVALHGGRN 409 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~-------------------------~~~~~~~~~~~ 409 (565)
.+...+.+.. ..++++||||++++.|+.+++.|.+.. ..+..+||+++
T Consensus 224 ~~~~~i~~~~-------~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 224 DINSLIKETV-------NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred cHHHHHHHHH-------hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 1222222211 123469999999999999998886531 24778999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCC---------CCCcccceecccccccCCC--ceeEEEEe
Q 008430 410 QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL---------PKTVEDYVHRIGRTGRGGS--MGQATSFY 478 (565)
Q Consensus 410 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 478 (565)
+++|..+++.|++|.++|||||+++++|+|+|+.. ||+.+. |.+..+|.||+|||||.|. .|.+++++
T Consensus 297 ~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 99999999999999999999999999999999864 554443 3467788999999999985 57788877
Q ss_pred cccc
Q 008430 479 TDRD 482 (565)
Q Consensus 479 ~~~~ 482 (565)
...+
T Consensus 376 ~~~~ 379 (674)
T PRK01172 376 ASPA 379 (674)
T ss_pred cCcc
Confidence 6543
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-42 Score=350.24 Aligned_cols=327 Identities=24% Similarity=0.360 Sum_probs=259.3
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+|+..+++-|.++|..++.|+++++.+|||.||++||.+|++-. .+.+|||.|..+|.+...+.++..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999998764 336899999999999999888885
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC--CHHHHH
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~ 291 (565)
++.+..+.+..+..+....+ .+..++++-+||+|..-...+.+..-.+.+++|||||++++|| |++.|.
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 67788887776666554433 3568999999999954433222334468999999999999997 888887
Q ss_pred HH---HHhCCCCCcEEEEEeecChHHHHHHHHHcCCCe-EEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhh
Q 008430 292 EV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV-QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 292 ~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (565)
++ ...++ +..++.+|||.+..+...+...+.-.. .+..... ..+++...+.... .. ...+. .+..
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~~-~~-~~q~~-fi~~----- 224 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEKG-EP-SDQLA-FLAT----- 224 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhcc-cH-HHHHH-HHHh-----
Confidence 76 34454 667999999999998887777655322 2222222 2233322222111 11 11111 2221
Q ss_pred hhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEE
Q 008430 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 447 (565)
Q Consensus 368 ~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi 447 (565)
......+++||||.|++.++.+++.|...|+.+..+|++|+.++|..+.++|..++++|+|||.+|++|||-|+|++||
T Consensus 225 -~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 225 -VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred -hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 1123344599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHH
Q 008430 448 NLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 448 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 492 (565)
||+.|.|+..|.|-+|||||+|.+..+++++.+.|....+.+.+.
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999998876665443
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.9e-41 Score=363.43 Aligned_cols=320 Identities=22% Similarity=0.300 Sum_probs=238.3
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHhHhCC------CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 130 PSIMKDI-EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 130 ~~i~~~l-~~~~~~~~~~~Q~~~l~~l~~g------~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
..+.+.+ ...+| +||++|++|++.+..+ .+.|++|+||||||++|+++++..+. +|.+++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEec
Confidence 3444444 44565 7999999999999876 37899999999999999999987754 3778999999
Q ss_pred chhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---H-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecch
Q 008430 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 278 (565)
|++|+.|+++.+++++... ++.+.+++|+....+.... + .+.++|+|||++.+.+ ...+.++++|||||+
T Consensus 319 T~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQ 392 (681)
T ss_pred cHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEech
Confidence 9999999999999998765 5899999999886544332 2 3469999999987743 345778999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
|++... .+..+.......++++|||||.+....... +.+.....+.........+...+. .......+++
T Consensus 393 Hrfg~~-----qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~---~~~~~~~~~~ 462 (681)
T PRK10917 393 HRFGVE-----QRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVI---PDSRRDEVYE 462 (681)
T ss_pred hhhhHH-----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEe---CcccHHHHHH
Confidence 987422 223333344467899999999765443322 222211112111111122322222 2223344445
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccc--------hHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEE
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
.+..... .+.+++|||+.++ .++.+++.|.+. ++++..+||+|++++|++++++|++|+++||
T Consensus 463 ~i~~~~~-------~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 535 (681)
T PRK10917 463 RIREEIA-------KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDIL 535 (681)
T ss_pred HHHHHHH-------cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 5544432 2335999999654 456677777765 5789999999999999999999999999999
Q ss_pred EEcCcccCCCCccCccEEEEcCCCC-CcccceecccccccCCCceeEEEEeccc
Q 008430 429 VATDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|||+++++|+|+|++++||++++|. ....+.|++||+||.|..|.|++++...
T Consensus 536 VaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 536 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred EECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999999999999999999986 5678899999999999999999999643
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.9e-41 Score=357.88 Aligned_cols=317 Identities=22% Similarity=0.284 Sum_probs=234.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHhHhCCC------CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 133 MKDIEFHEYTRPTSIQAQAMPVALSGR------DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~~l~~l~~g~------~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
.+.+...+| +||+.|++|++.+..+. +.|++|+||||||++|+++++..+. ++.+++|++||++|
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~~L 296 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTEIL 296 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHHHH
Confidence 344567787 79999999999998652 5899999999999999998887654 37789999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+.|+++.+++++... ++.+.+++|+....+.... ..++++|+|+|++.+.+ ...+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 999999999998765 6899999999876653322 23568999999987753 3567789999999999865
Q ss_pred cCCCHHHHHHHHHhCC--CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008430 283 DMGFEPQIREVMQNLP--DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 283 ~~~~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (565)
.. ....+..... ...++++|||||.+...... .+.+.....+.........+.... ... .....++..+
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~--~~~-~~~~~~~~~i 441 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVL--IKH-DEKDIVYEFI 441 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEE--eCc-chHHHHHHHH
Confidence 22 2222333332 25689999999866543322 112111111111111111222222 122 2224444444
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccc--------hHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEE
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
.+.... +.+++|||+..+ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+++||||
T Consensus 442 ~~~l~~-------g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 442 EEEIAK-------GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred HHHHHh-------CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 443322 235999998764 456777777664 778999999999999999999999999999999
Q ss_pred cCcccCCCCccCccEEEEcCCCC-CcccceecccccccCCCceeEEEEecc
Q 008430 431 TDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 480 (565)
|+++++|||+|++++||+++.|. +...|.|++||+||.|+.|.|++++..
T Consensus 515 T~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 515 TTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred CceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999999999999999986 677889999999999999999999943
No 51
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.8e-41 Score=323.71 Aligned_cols=326 Identities=25% Similarity=0.288 Sum_probs=239.9
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..+++.||.......+.+ |.|++.|||.|||+++++-+...+... ++++||++||+-|+.|.+..|+++++.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhCC
Confidence 357899999999888765 899999999999999988777666653 448999999999999999999999865
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
+.-.+..++|.....+... .+...+|+|+|||.+.+-+..+.++++++.+||+||||+.....-...+.+-......+
T Consensus 85 -p~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 85 -PEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred -ChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 3567788888887776554 44568999999999999999999999999999999999987543222233333333456
Q ss_pred CcEEEEEeecChHHHHH---HHHHcCCCeEEEeCCcCCCCC-----ceEEE-----------------------------
Q 008430 301 HQTLLFSATMPVEIEAL---AQEYLTDPVQVKVGKVSSPTA-----NVIQI----------------------------- 343 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------------------------- 343 (565)
+.++++||||..+.+.. +..+....+.+.........+ .+.++
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67999999995443322 111111111111000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 008430 344 -------------------------------------------------------------------------------- 343 (565)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (565)
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence
Q ss_pred ------------------EEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCcee-Ee
Q 008430 344 ------------------LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-AL 404 (565)
Q Consensus 344 ------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~-~~ 404 (565)
....-...|...+.+.+.+.. ...+..++|||++.++.|+.+.+.|.+.+..+. .+
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~-----~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rF 397 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQL-----EKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRF 397 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHH-----hcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEE
Confidence 000001112222222222221 123346899999999999999999999988774 32
Q ss_pred --------cCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEE
Q 008430 405 --------HGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 405 --------~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 476 (565)
..||+++++.++++.|++|+.+|||||++.++|+|||++++||+|++..|...++||.||+||. +.|.+++
T Consensus 398 iGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~v 476 (542)
T COG1111 398 IGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVV 476 (542)
T ss_pred eeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred Eecccc
Q 008430 477 FYTDRD 482 (565)
Q Consensus 477 ~~~~~~ 482 (565)
++....
T Consensus 477 Lvt~gt 482 (542)
T COG1111 477 LVTEGT 482 (542)
T ss_pred EEecCc
Confidence 999873
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.3e-41 Score=356.31 Aligned_cols=320 Identities=18% Similarity=0.210 Sum_probs=239.1
Q ss_pred CCCCCCCHHHHHHHHhHhCCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 139 HEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.||. |+|||+++++.++.|+ ++++.+|||||||.+++++++.. ... .....++++++|+++|+.|+++.+.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----AKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----ccccceEEEeCchHHHHHHHHHHHHHH
Confidence 4776 9999999999999998 57788999999998765433321 111 112335566889999999999999999
Q ss_pred hhcCC----------------------CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-C--------CC-
Q 008430 218 SRSLD----------------------SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-G--------NT- 265 (565)
Q Consensus 218 ~~~~~----------------------~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-~--------~~- 265 (565)
.+.++ .+++..++||.....+...+..+++|||+|++.+.+.... + .+
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccch
Confidence 87542 3788999999999888888888999999996555322110 0 00
Q ss_pred --CCCCceEEEecchhHhhcCCCHHHHHHHHHhC--CC---CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCC
Q 008430 266 --SLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD---KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA 338 (565)
Q Consensus 266 --~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~--~~---~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (565)
.+.++.+||+|||| ++.+|...+..|+... ++ +.|+++||||++.++......++.++..+.+........
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 26789999999999 5788999999999964 33 268999999999888777777776666555443332223
Q ss_pred ceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHH----
Q 008430 339 NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE---- 414 (565)
Q Consensus 339 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~---- 414 (565)
.+.+. .......+...++..+..... ..++++|||||+++.|+.+++.|.+.++ ..+||+|++.+|.
T Consensus 244 ki~q~-v~v~~e~Kl~~lv~~L~~ll~------e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 244 KIVKL-VPPSDEKFLSTMVKELNLLMK------DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred ceEEE-EecChHHHHHHHHHHHHHHHh------hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 33432 233333344444443332221 1234699999999999999999999887 8999999999999
Q ss_pred -HHHHHhhc----CC-------ceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCce-eEEEEe
Q 008430 415 -SALRDFRN----GS-------TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMG-QATSFY 478 (565)
Q Consensus 415 -~~~~~f~~----g~-------~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g-~~~~~~ 478 (565)
.++++|++ |+ ..|||||+++++||||+. ++||+...| ...|+||+||+||.|+.| ..++++
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 78999987 44 689999999999999986 888887766 689999999999999853 334444
No 53
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=323.53 Aligned_cols=343 Identities=26% Similarity=0.334 Sum_probs=270.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHh-HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~-l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
..+++++++++.+-|+..|+.++.|+|..|+.. +++|+|.+|+++|+||||++..++-+..++. .|+++||+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 456788999999999999999999999999986 6799999999999999999999998888887 38889999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH----HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
||..+|++|-++.|+.....+ ++.+.+-.|-........ ....++||||+|++-+..++..+ ..+.+++.||||
T Consensus 268 vPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 999999999999999988766 677877777655443321 12346999999999997777665 678899999999
Q ss_pred chhHhhcCCCHHHHHHH---HHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec-cchH
Q 008430 277 EADRMLDMGFEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEK 352 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k 352 (565)
|+|.+.+...+..+.-+ ++++-+..|+|++|||..+. +.+++.+-...+.+. ..+. .+...+.... ..+|
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~----~RPV-plErHlvf~~~e~eK 419 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD----ERPV-PLERHLVFARNESEK 419 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec----CCCC-ChhHeeeeecCchHH
Confidence 99998876555544433 44555689999999999655 345555543333222 1222 2233333444 4555
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
.+ ++..+.+............+++|||++|+..|.++++.|..+|+++..+|++++..+|+.+...|.++++.++|+|.
T Consensus 420 ~~-ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 420 WD-IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HH-HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 54 44445455555555556677899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccCccEEEE----cCCC-CCcccceecccccccCC--CceeEEEEeccc
Q 008430 433 VASRGLDVMGVAHVVN----LDLP-KTVEDYVHRIGRTGRGG--SMGQATSFYTDR 481 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~----~~~~-~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 481 (565)
+++.|||+|. +.||+ ++.- .|+..|.||+|||||-+ ..|.|++++.+.
T Consensus 499 AL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999996 44543 3333 38999999999999976 469999988765
No 54
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.3e-40 Score=341.96 Aligned_cols=309 Identities=16% Similarity=0.140 Sum_probs=220.4
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
...|+++|++|++.++.+++.++++|||+|||++++. +....... ...++|||||+++|+.||.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999998643 33333332 2347999999999999999999997643
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
. ...+..+.+|... ..+.+|+|+|++++.+... ..++++++||+||||++.. ..+..++..+++.
T Consensus 185 ~-~~~~~~i~~g~~~-------~~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~ 249 (501)
T PHA02558 185 P-REAMHKIYSGTAK-------DTDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNC 249 (501)
T ss_pred c-ccceeEEecCccc-------CCCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhcc
Confidence 2 2344445555422 1457899999999975432 2357899999999999874 4567777777666
Q ss_pred CcEEEEEeecChHHHHH--HHHHcCCCeEEEeCCcC------CCCCceEEEEEEe---------------------ccch
Q 008430 301 HQTLLFSATMPVEIEAL--AQEYLTDPVQVKVGKVS------SPTANVIQILEKV---------------------SENE 351 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------------------~~~~ 351 (565)
.+++||||||....... +..+++ ++........ .....+....... ....
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 78999999996543211 122233 2221111000 0000000000000 0011
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 008430 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
+...+...+... . ..+.++||||+++++++.+++.|++.+.++..+||+++.++|..+++.|++|+..|||||
T Consensus 329 Rn~~I~~~~~~~-~------~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 329 RNKWIANLALKL-A------KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHHHHHHHHHHH-H------hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 111111111111 1 123468999999999999999999999999999999999999999999999999999998
Q ss_pred -CcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec
Q 008430 432 -DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 432 -~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
+++++|+|+|++++||+++|+.|...|+||+||++|.+..+...++++
T Consensus 402 ~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 402 YGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred cceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 899999999999999999999999999999999999877655444443
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6e-39 Score=357.99 Aligned_cols=310 Identities=20% Similarity=0.259 Sum_probs=224.2
Q ss_pred EEccCCChhHHHHHHHHHHHHHhcCCC-----CCCCCCeEEEEccchhhHHHHHHHHHHHhh-----------cCCCceE
Q 008430 163 GCAETGSGKTAAFTIPMIQHCVAQTPV-----GRGDGPLALVLAPTRELAQQIEKEVKALSR-----------SLDSFKT 226 (565)
Q Consensus 163 i~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~-----------~~~~~~~ 226 (565)
|++|||||||++|.+|++..++.+... ...++.++|||+|+++|+.|+.+.++..+. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998865311 122468899999999999999999875322 1125889
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-CCCCCCceEEEecchhHhhcCCC----HHHHHHHHHhCCCCC
Q 008430 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGF----EPQIREVMQNLPDKH 301 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~iIiDE~H~~~~~~~----~~~~~~i~~~~~~~~ 301 (565)
...+|+....+....+.+.++|||+||++|..++... ...+.++++|||||+|.+.+..+ ...+.++....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777778999999999998877643 34688999999999999986543 345566666667778
Q ss_pred cEEEEEeecChHHHHHHHHHcC--CCeEEEeCCcCCCCCceEEEEEEeccchH----------------HHHHHHHHHHH
Q 008430 302 QTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEK----------------VDRLLALLVEE 363 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----------------~~~l~~~l~~~ 363 (565)
|+|++|||+++. +... .++. .+..+.. ........+.. ........+ ...+...+...
T Consensus 161 QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~-~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVA-AFLGGDRPVTVVN-PPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH-HHHH-HHhcCCCCEEEEC-CCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999763 4444 4543 2444432 11111222221 111111000 00111111111
Q ss_pred HHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC---------------------------------CceeEecCCCCH
Q 008430 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---------------------------------LHAVALHGGRNQ 410 (565)
Q Consensus 364 ~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~---------------------------------~~~~~~~~~~~~ 410 (565)
..... ....++||||||+..|+.++..|++.. ..+..+||++++
T Consensus 237 il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 237 ILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 11000 112359999999999999999997642 125679999999
Q ss_pred HHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccC-CCceeEEEEec
Q 008430 411 SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG-GSMGQATSFYT 479 (565)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~ 479 (565)
++|..+++.|++|++++||||+.++.|||++++++||+++.|.+...|+||+||+||. |..+.++++..
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999996 33345554443
No 56
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-41 Score=293.92 Aligned_cols=320 Identities=33% Similarity=0.552 Sum_probs=273.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.-|.++-|.|++++++...||..|..+|.+|||...-|-++++.|..|.|||.+|.+.-++.+.-. .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457788899999999999999999999999999999999999999999999999988877765322 124568999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
|++++|+-|+.+++.++.+..++.++..++||.........+.+-++|+|+||+++..+.....+.+++++..|+|||+.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999999999999999999999999998888778888899999999999999999999999999999999998
Q ss_pred hhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCC-CCCceEEEEEEeccchHHHHHHH
Q 008430 281 MLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 281 ~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
++++ +....++.|++..+...|+..+|||++.++....+.++.+|..+.+..... ....+.+.+..+...+|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 8754 456778889999999999999999999999999999999999887765432 23456667777777777777777
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCC
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
++...... .++||+.+... | . | ..+ +|+|+++++|+
T Consensus 277 LLd~LeFN---------QVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgm 312 (387)
T KOG0329|consen 277 LLDVLEFN---------QVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGM 312 (387)
T ss_pred hhhhhhhc---------ceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhcccc
Confidence 76554322 49999988765 0 0 2 123 89999999999
Q ss_pred CccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc-cHHHHHHH
Q 008430 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQI 489 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l 489 (565)
|+..++.|++||.|.+...|+||+|||||.|.+|.+++|+... |...+..+
T Consensus 313 diervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~v 364 (387)
T KOG0329|consen 313 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPV 364 (387)
T ss_pred CcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchh
Confidence 9999999999999999999999999999999999999999765 44444443
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.5e-38 Score=348.29 Aligned_cols=283 Identities=22% Similarity=0.312 Sum_probs=217.0
Q ss_pred CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|+ +|+++|+.+++.++.|++++++||||+|||.. .++++..+.. +++++|||+||++|+.|+++.++.+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 366 89999999999999999999999999999964 4555544432 37889999999999999999999998
Q ss_pred hcCCCceEEEEECCCCH-----HHHHHHHh-CCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc---------
Q 008430 219 RSLDSFKTAIVVGGTNI-----AEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--------- 283 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~-----~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~--------- 283 (565)
... ++.+..++|+... .+....+. ++++|+|+||++|.+.+. .+....+++|||||||++++
T Consensus 148 ~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 148 EKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 764 4666666665431 22222333 569999999999998776 35566799999999999986
Q ss_pred --CCCH-HHHHHHHHhCCC------------------------CCcEEEEEeecChH-HHHHHHHHcCCCeEEEeCCcCC
Q 008430 284 --MGFE-PQIREVMQNLPD------------------------KHQTLLFSATMPVE-IEALAQEYLTDPVQVKVGKVSS 335 (565)
Q Consensus 284 --~~~~-~~~~~i~~~~~~------------------------~~~~l~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (565)
.||. ..+..++..++. ..|++++|||++.. +.. .++.++..+.+.....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF 301 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc
Confidence 5664 567777766653 67899999999754 332 2334444555555444
Q ss_pred CCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccch---HHHHHHHHHHcCCceeEecCCCCHHH
Q 008430 336 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVALHGGRNQSD 412 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~---a~~l~~~l~~~~~~~~~~~~~~~~~~ 412 (565)
...++.+.+.... .+...+...+... +.++||||+++.. |+.+++.|...|+++..+||++
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l----------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---- 365 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL----------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---- 365 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc----------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----
Confidence 4556766666544 4445555544321 1249999999887 9999999999999999999999
Q ss_pred HHHHHHHhhcCCceEEEE----cCcccCCCCccC-ccEEEEcCCCC
Q 008430 413 RESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLPK 453 (565)
Q Consensus 413 r~~~~~~f~~g~~~vLv~----T~~~~~Gidip~-v~~Vi~~~~~~ 453 (565)
...+++|++|+++|||| |++++||||+|+ |++||||+.|.
T Consensus 366 -~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 -ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred -HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 699999999999 89999999885
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.1e-38 Score=332.50 Aligned_cols=321 Identities=17% Similarity=0.191 Sum_probs=230.8
Q ss_pred HHHHHHHHhHhCCCCEEEEccCCChhHHH---------HHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 146 SIQAQAMPVALSGRDLLGCAETGSGKTAA---------FTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 146 ~~Q~~~l~~l~~g~~~li~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.+|+++++.+++|+++|+.|+||+|||.+ |+++.+..+..-. ....++++++++||++|+.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 48999999999999999999999999986 3333443332110 012356899999999999999999988
Q ss_pred Hhhc--CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHH
Q 008430 217 LSRS--LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (565)
Q Consensus 217 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~ 294 (565)
..+. ..+..+...+|+.... .........+|+|+|++... ..+.++++|||||||.+...+ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHH
Confidence 7654 2346678889987632 11122235789999975311 346789999999999876653 4455555
Q ss_pred HhCC-CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEecc---------chHHHHHHHHHHHHH
Q 008430 295 QNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE---------NEKVDRLLALLVEEA 364 (565)
Q Consensus 295 ~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~k~~~l~~~l~~~~ 364 (565)
.... ...|+++||||++.+...+ ..++.++..+.+... ....+.+.+..... ......+...+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 4433 3358999999998887665 678888877766421 22334444332211 011111222221110
Q ss_pred HhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHh-hcCCceEEEEcCcccCCCCcc
Q 008430 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDF-RNGSTNILVATDVASRGLDVM 441 (565)
Q Consensus 365 ~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vLv~T~~~~~Gidip 441 (565)
....+.+||||+++.+++.+++.|.+. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|||+|
T Consensus 392 ------~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp 463 (675)
T PHA02653 392 ------PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIR 463 (675)
T ss_pred ------cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccccc
Confidence 112346999999999999999999987 78999999999974 5677777 689999999999999999999
Q ss_pred CccEEEEcC---CCC---------CcccceecccccccCCCceeEEEEeccccHHHHHHHH
Q 008430 442 GVAHVVNLD---LPK---------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 442 ~v~~Vi~~~---~~~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 490 (565)
+|++||+++ .|. |...|+||+||+||. ++|.|+.++++.+...+.++.
T Consensus 464 ~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 464 NATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999999998 444 777899999999999 789999999988765555443
No 59
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.3e-37 Score=331.59 Aligned_cols=381 Identities=19% Similarity=0.234 Sum_probs=256.0
Q ss_pred CCCCHHHHHHHHhHhCC---CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 142 TRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g---~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..|++.|+++++.+..+ +++++.|+||+|||.+|+.++...+ . .|+++||++|+++|+.|+.+.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~-------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-A-------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 6799999999999999976655443 3 26789999999999999999999876
Q ss_pred hcCCCceEEEEECCCCHHHHHH----HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-----CHHH
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FEPQ 289 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-----~~~~ 289 (565)
+..+..++|+....+... ...+..+|||+|++.++ .++.++++|||||+|...... |...
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 356888888877654433 33467899999998875 567889999999999765322 1111
Q ss_pred HHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCc--CCCCCceEEEEEEeccc-------hHHHHHHHHH
Q 008430 290 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV--SSPTANVIQILEKVSEN-------EKVDRLLALL 360 (565)
Q Consensus 290 ~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~k~~~l~~~l 360 (565)
-..++.....+.+++++||||+.+....+..... ..+..... ....+.+.. ..+... .-...+++.+
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~~~~~~g~~--~~~~l~~r~~~~~~p~v~~--id~~~~~~~~~~~~ls~~l~~~i 359 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESLANAQQGRY--RLLRLTKRAGGARLPEVEI--IDMRELLRGENGSFLSPPLLEAI 359 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHHHHHhccce--eEEEeccccccCCCCeEEE--EechhhhhhcccCCCCHHHHHHH
Confidence 1123333445788999999998776554432211 11111111 111112211 111110 0113344444
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccc-------------------------------------------------------
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKT------------------------------------------------------- 385 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~------------------------------------------------------- 385 (565)
.+....+ .++|+|+|++.
T Consensus 360 ~~~l~~g-------~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l 432 (679)
T PRK05580 360 KQRLERG-------EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDL 432 (679)
T ss_pred HHHHHcC-------CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCee
Confidence 4433322 24888877643
Q ss_pred -----hHHHHHHHHHHc--CCceeEecCCCC--HHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcC--CCCC
Q 008430 386 -----RCDEVSEALVAE--GLHAVALHGGRN--QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD--LPKT 454 (565)
Q Consensus 386 -----~a~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~--~~~s 454 (565)
.++.+++.|.+. +.++..+|+++. .++++.+++.|++|+.+|||+|+++++|+|+|+|++|+.++ .+.+
T Consensus 433 ~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 433 VPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred EEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 236778888776 788999999986 46799999999999999999999999999999999996554 4433
Q ss_pred c----------ccceecccccccCCCceeEEEEeccccHHHHHHH---------HHHHHhhhcCCcchhhhhh-------
Q 008430 455 V----------EDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFATGK------- 508 (565)
Q Consensus 455 ~----------~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~------- 508 (565)
. ..|+|++||+||.+..|.+++.....+...+..+ +..+..++..+..+|...-
T Consensus 513 ~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~ 592 (679)
T PRK05580 513 SPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAK 592 (679)
T ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecC
Confidence 3 4579999999999999999998877665544433 4556666666665555221
Q ss_pred -HHHHHHHHHH-HHhcCcccccccccccCCC----ccchhHHHHHHhccc
Q 008430 509 -VARRKEREAA-AAQKGATVATSKLSMMGPS----VNIEDKYRFMIAASN 552 (565)
Q Consensus 509 -~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~----~~~~~~yr~~~~~~~ 552 (565)
.....+.... ............+.++||. .|++++|||+|+-+-
T Consensus 593 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~ 642 (679)
T PRK05580 593 DEEKAEKFAQQLAALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKS 642 (679)
T ss_pred CHHHHHHHHHHHHHHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEe
Confidence 1111111111 1111111001245689998 899999999999774
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.9e-37 Score=332.88 Aligned_cols=311 Identities=19% Similarity=0.241 Sum_probs=234.5
Q ss_pred HHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEE
Q 008430 148 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (565)
Q Consensus 148 Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~ 227 (565)
-.+.+..+..+++++++|+||||||.++.+++++... .+.+++++.|+++++.|+++.+.+.++...+..++
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3456667777889999999999999999888887642 24579999999999999999997766543345666
Q ss_pred EEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh-HhhcCCCHHH-HHHHHHhCCCCCcEEE
Q 008430 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLL 305 (565)
Q Consensus 228 ~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~i~~~~~~~~~~l~ 305 (565)
..+++.. ....+.+|+|+|++.|.+.+.. ...+.++++|||||+| ++.+.++.-. +..+...++++.|+|+
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 6655543 2334578999999999988876 4578899999999999 5676665433 3456666788899999
Q ss_pred EEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHH-HHHHHHHHHHhhhhcCCCCCeEEEEeccc
Q 008430 306 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR-LLALLVEEAFLAEKSCHPFPLTIVFVERK 384 (565)
Q Consensus 306 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~l~~~~~~~~~~~~~~~~~liF~~s~ 384 (565)
||||++... +..++.++..+..... ...+...+......++... +...+.... . ...+.+||||+++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~-----~~~g~iLVFlpg~ 219 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHAL-A-----SETGSILVFLPGQ 219 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHH-H-----hcCCcEEEEECCH
Confidence 999998653 4567765544443221 1223333333333333221 112222111 1 1124699999999
Q ss_pred chHHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCC-------
Q 008430 385 TRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKT------- 454 (565)
Q Consensus 385 ~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s------- 454 (565)
.+++.+++.|.+ .++.+..+||++++++|..+++.|.+|+.+|||||+++++|||||+|++||+++.+..
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 4788999999999999999999999999999999999999999999999999998752
Q ss_pred -----------cccceecccccccCCCceeEEEEeccccHHHH
Q 008430 455 -----------VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV 486 (565)
Q Consensus 455 -----------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 486 (565)
...|+||.||+||. .+|.|+.++++.+...+
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 23478999999999 78999999998765543
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.1e-37 Score=350.55 Aligned_cols=330 Identities=18% Similarity=0.228 Sum_probs=248.9
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 131 SIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 131 ~i~~~l~~-~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
++.+.+++ .|+ +|+++|+++++.++.|++++++||||+|||++++++.+... . .+.++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~-------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L-------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h-------cCCeEEEEECHHHHHHH
Confidence 44455554 798 79999999999999999999999999999996655544332 1 36789999999999999
Q ss_pred HHHHHHHHhhcCC-CceEEEEECCCCHHHHHHH---H-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc-
Q 008430 210 IEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD- 283 (565)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~- 283 (565)
+.+.++.++.... ++.+..++|+....++... + .++++|+|+||+.|.+.+... ...++++|||||||++++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccc
Confidence 9999999876542 4567778888877655322 2 346999999999998765532 226799999999999976
Q ss_pred ----------CCCHHHHHH----HHH----------------------hCCCCCc-EEEEEeecChHHHHHHHHHcCCCe
Q 008430 284 ----------MGFEPQIRE----VMQ----------------------NLPDKHQ-TLLFSATMPVEIEALAQEYLTDPV 326 (565)
Q Consensus 284 ----------~~~~~~~~~----i~~----------------------~~~~~~~-~l~~SAT~~~~~~~~~~~~~~~~~ 326 (565)
.||.+.+.. ++. .++...| ++++|||++... ....++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCe
Confidence 477766653 322 2344455 577999998531 2223456677
Q ss_pred EEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccch---HHHHHHHHHHcCCceeE
Q 008430 327 QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVA 403 (565)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~---a~~l~~~l~~~~~~~~~ 403 (565)
.+.+........++.+.+.......+ ..+...+... +..+||||++++. |+.+++.|.+.|+++..
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~ 362 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL----------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIEL 362 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC----------CCCeEEEEeccccchHHHHHHHHHHHCCCeEEE
Confidence 77776655555667776665544433 3444444321 1249999999875 58999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEc----CcccCCCCccC-ccEEEEcCCCC---Ccccceecc-------------
Q 008430 404 LHGGRNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLPK---TVEDYVHRI------------- 462 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidip~-v~~Vi~~~~~~---s~~~~~Q~~------------- 462 (565)
+||+ |...+++|++|+++||||| ++++||||+|+ |++|||+|.|. +...|.|-.
T Consensus 363 ~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~ 437 (1638)
T PRK14701 363 VSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKI 437 (1638)
T ss_pred ecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHh
Confidence 9995 8899999999999999999 58999999999 99999999999 888777766
Q ss_pred cccccCCCceeEEEEeccccHHHHHHH
Q 008430 463 GRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 463 GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
||+||.|..+.++..+...+...++++
T Consensus 438 ~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 438 EEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred hhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 999999988888755555555554443
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.2e-37 Score=330.74 Aligned_cols=309 Identities=20% Similarity=0.265 Sum_probs=232.3
Q ss_pred HHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEE
Q 008430 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 228 (565)
Q Consensus 149 ~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 228 (565)
.+.+..+.+++++++.|+||||||.++.+++++... ..+++++++||++++.|+++.+.+.++...+..++.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 456667778889999999999999999888776421 134799999999999999999987665444567777
Q ss_pred EECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH-hhcCCCH-HHHHHHHHhCCCCCcEEEE
Q 008430 229 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFE-PQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 229 ~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~-~~~~~~~-~~~~~i~~~~~~~~~~l~~ 306 (565)
.+++... .....+|+|+|++.|.+++.. ...++++++|||||+|. ..+.++. ..+..++..++++.|+++|
T Consensus 83 ~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 83 RMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred EecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 7776532 234568999999999988875 45788999999999996 3443322 2345566777888999999
Q ss_pred EeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHH-HHHHHHHHHhhhhcCCCCCeEEEEecccc
Q 008430 307 SATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL-LALLVEEAFLAEKSCHPFPLTIVFVERKT 385 (565)
Q Consensus 307 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~~~~~~~~liF~~s~~ 385 (565)
|||++.. .+..++.++..+..... ...+...+.......+.... ...+..... ...+.+||||+++.
T Consensus 156 SATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~------~~~g~iLVFlpg~~ 223 (812)
T PRK11664 156 SATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLR------QESGSLLLFLPGVG 223 (812)
T ss_pred ecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHH------hCCCCEEEEcCCHH
Confidence 9999865 34567765544443221 12234444333333333221 112222111 11346999999999
Q ss_pred hHHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCC---------
Q 008430 386 RCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK--------- 453 (565)
Q Consensus 386 ~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~--------- 453 (565)
+++.+++.|.+ .++.+..+||++++++|..+++.|.+|+.+|||||+++++|||||+|++||+++.+.
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999997 578899999999999999999999999999999999999999999999999977664
Q ss_pred ---------CcccceecccccccCCCceeEEEEeccccHHH
Q 008430 454 ---------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 454 ---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
|...|+||.||+||. .+|.|+.++++.+...
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 234799999999999 6899999999876543
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4e-36 Score=311.19 Aligned_cols=320 Identities=25% Similarity=0.238 Sum_probs=243.7
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|..+++.++.|+ |..+.||+|||++|++|++..... |+.++||+|+++||.|.++.+..++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 479999999999999998 999999999999999999987553 7789999999999999999999999876
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC-------------------------CCCCCceEEEe
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN-------------------------TSLSRVSFVIL 275 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~-------------------------~~~~~~~~iIi 275 (565)
++++++++|+..... .....+++|+++|...| ++++..+- .....+.++||
T Consensus 172 -Glsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred -CCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 799999999986543 34456799999999988 55554331 12345889999
Q ss_pred cchhHhh-cC-----------------CCHHHHHHHHHhCCC--------------------------------------
Q 008430 276 DEADRML-DM-----------------GFEPQIREVMQNLPD-------------------------------------- 299 (565)
Q Consensus 276 DE~H~~~-~~-----------------~~~~~~~~i~~~~~~-------------------------------------- 299 (565)
||+|.++ |+ ........+...+..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999543 10 000000111100000
Q ss_pred -------------------------------------------------------------------------------C
Q 008430 300 -------------------------------------------------------------------------------K 300 (565)
Q Consensus 300 -------------------------------------------------------------------------------~ 300 (565)
-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0
Q ss_pred CcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEE
Q 008430 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF 380 (565)
.++.|||||......++...|..+++.+...... .....+.+...+..+|...+.+.+...... +.++|||
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~-------~~pvLIf 479 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQ-------GRPVLVG 479 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhc-------CCCEEEE
Confidence 1456789998877777777777776555443322 222333445566677888887777653211 2359999
Q ss_pred ecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCcc---Ccc-----EEEEcCCC
Q 008430 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLP 452 (565)
Q Consensus 381 ~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip---~v~-----~Vi~~~~~ 452 (565)
|++++.++.+++.|.+.|+++..+||.+. +|+..+..|+.+...|+|||+++++|+||+ +|. +||+++.|
T Consensus 480 t~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P 557 (656)
T PRK12898 480 TRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERH 557 (656)
T ss_pred eCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCC
Confidence 99999999999999999999999999865 455555556666667999999999999999 676 99999999
Q ss_pred CCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 453 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 453 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
.+...|+||+||+||.|.+|.++.+++.+|...
T Consensus 558 ~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 558 DSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999999999999999999999999999877544
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=327.70 Aligned_cols=333 Identities=20% Similarity=0.275 Sum_probs=246.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
+.+.+.+-++..++.++++.|+.++.....+ +|+||++|||+|||+++++.++..+.+. +.+++||||+++|
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkAL 88 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKAL 88 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHHH
Confidence 5677777778888889999999999887654 8999999999999999999999888763 6779999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCC
Q 008430 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 286 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~ 286 (565)
+.|.+++|+++-. . ++++...+|+...... ...+++|+|+|||++...+.+.......+++|||||+|.+.+...
T Consensus 89 a~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 89 AEEKYEEFSRLEE-L-GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHhhhHHh-c-CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 9999999994433 2 7999999999875552 235699999999999988888777788999999999998887766
Q ss_pred HHHHHHHHHhC---CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCc--CCCCCceEEEEEEeccch------HHHH
Q 008430 287 EPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV--SSPTANVIQILEKVSENE------KVDR 355 (565)
Q Consensus 287 ~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------k~~~ 355 (565)
++.+..|.... ....|++++|||+++.. +++...-.++........ ........ .+....... ....
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA~wL~a~~~~~~~rp~~l~~~v~~~~-~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNAE-EVADWLNAKLVESDWRPVPLRRGVPYVG-AFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCHH-HHHHHhCCcccccCCCCcccccCCccce-EEEEecCccccccccchHH
Confidence 66666665544 33479999999997653 333333222221111111 11111111 122222111 2223
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-------------------------------------C
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------G 398 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-------------------------------------~ 398 (565)
.+..+.... ..++++||||+++..+...++.+... .
T Consensus 242 ~~~~v~~~~-------~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~ 314 (766)
T COG1204 242 ALELVLESL-------AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVL 314 (766)
T ss_pred HHHHHHHHH-------hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHH
Confidence 333333322 23446999999999999999888730 1
Q ss_pred CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEE----EcC-----CCCCcccceecccccccCC
Q 008430 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLD-----LPKTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 399 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----~~~-----~~~s~~~~~Q~~GR~~R~g 469 (565)
..+..+|++++.++|..+.+.|+.|.++||+||+.++.|+|+|.-.+|| .|+ .+.+.-+++||+|||||-|
T Consensus 315 ~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 315 RGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred hCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 2367899999999999999999999999999999999999999766555 355 3446788999999999977
Q ss_pred C--ceeEEEEeccc
Q 008430 470 S--MGQATSFYTDR 481 (565)
Q Consensus 470 ~--~g~~~~~~~~~ 481 (565)
- .|.++++.+..
T Consensus 395 ~d~~G~~~i~~~~~ 408 (766)
T COG1204 395 YDDYGEAIILATSH 408 (766)
T ss_pred cCCCCcEEEEecCc
Confidence 4 58888888443
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-35 Score=329.93 Aligned_cols=290 Identities=23% Similarity=0.353 Sum_probs=214.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 132 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 132 i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
+.+.+......+|+++|+.+++.++.|++++++||||+|||. |.++++..+.. .++++|||+||++|+.|+.
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 344444445558999999999999999999999999999997 55777665543 3778999999999999999
Q ss_pred HHHHHHhhcCCCce---EEEEECCCCHHHHHH---HH-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc-
Q 008430 212 KEVKALSRSLDSFK---TAIVVGGTNIAEQRS---EL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD- 283 (565)
Q Consensus 212 ~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~---~~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~- 283 (565)
+.++.++... ++. ++.++|+....++.. .+ .++++|||+||++|.+.+.. +.. ++++||+||||++++
T Consensus 139 ~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 139 EKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhc
Confidence 9999998654 233 335678877655432 22 34699999999999887664 222 799999999999987
Q ss_pred ----------CCCHHH-HHHHH----------------------HhCCCCCc--EEEEEee-cChHHHHHHHHHcCCCeE
Q 008430 284 ----------MGFEPQ-IREVM----------------------QNLPDKHQ--TLLFSAT-MPVEIEALAQEYLTDPVQ 327 (565)
Q Consensus 284 ----------~~~~~~-~~~i~----------------------~~~~~~~~--~l~~SAT-~~~~~~~~~~~~~~~~~~ 327 (565)
.||... +..++ ..++...| ++++||| .+..... .++.+...
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 456543 33332 23344444 6678999 4544332 24455555
Q ss_pred EEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeccc---chHHHHHHHHHHcCCceeEe
Q 008430 328 VKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK---TRCDEVSEALVAEGLHAVAL 404 (565)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~---~~a~~l~~~l~~~~~~~~~~ 404 (565)
+.+........++.+.+..... +...+...+... +.++||||+++ +.|+++++.|.+.|+++..+
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l----------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~l 359 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL----------GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAY 359 (1171)
T ss_pred eEecCccccccceEEEEEeccc--HHHHHHHHHHHc----------CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEE
Confidence 6555544445566666554332 233344443221 12499999999 99999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEE----cCcccCCCCccC-ccEEEEcCCC
Q 008430 405 HGGRNQSDRESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLP 452 (565)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~~Gidip~-v~~Vi~~~~~ 452 (565)
||+++ +.++++|++|+++|||| |++++||||+|+ |++||+||.|
T Consensus 360 hg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 360 HATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred eCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99996 36899999999999999 599999999999 8999998766
No 66
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.2e-37 Score=314.11 Aligned_cols=337 Identities=26% Similarity=0.329 Sum_probs=235.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
+.+.............++.||.+.+...+ |+++||++|||+|||++++.-++.++...+ ..+++|++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 34444444444455689999999999999 999999999999999999887777765542 47799999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCC-CCCceEEEecchhHhhcCC-
Q 008430 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS-LSRVSFVILDEADRMLDMG- 285 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~-~~~~~~iIiDE~H~~~~~~- 285 (565)
.|....+..++.. ..+....||.........+....+|+|+||+.|.+.+...... +..|.+|||||||+.....
T Consensus 120 ~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 120 NQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 9999888877642 4555555665444444466677999999999999888876443 5889999999999987554
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHH----------------------------------------------
Q 008430 286 FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ---------------------------------------------- 319 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~---------------------------------------------- 319 (565)
|...++..+.......|+||+||||.........
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 4444555555555555999999999533222111
Q ss_pred ----HHcCCCe---EEEeCCcC------------CCCCc--------------------------eE-------------
Q 008430 320 ----EYLTDPV---QVKVGKVS------------SPTAN--------------------------VI------------- 341 (565)
Q Consensus 320 ----~~~~~~~---~~~~~~~~------------~~~~~--------------------------~~------------- 341 (565)
.++.... .+...... ....+ +.
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 0000000 00000000 00000 00
Q ss_pred ---------------------------EEEEEe--ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHH
Q 008430 342 ---------------------------QILEKV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (565)
Q Consensus 342 ---------------------------~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~ 392 (565)
..+... ....+...+.+.+.+... ..+..++||||.+++.|..|..
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~-----~~~dsR~IIFve~R~sa~~l~~ 431 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE-----QNPDSRTIIFVETRESALALKK 431 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh-----cCCCccEEEEEehHHHHHHHHH
Confidence 000000 012233333333333222 3445689999999999999999
Q ss_pred HHHHc---CCceeEec--------CCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceec
Q 008430 393 ALVAE---GLHAVALH--------GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHR 461 (565)
Q Consensus 393 ~l~~~---~~~~~~~~--------~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~ 461 (565)
.|... |++...+- .+|++.++.+++++|++|+++|||||+++++|+||++|++||-||...|+...+||
T Consensus 432 ~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQr 511 (746)
T KOG0354|consen 432 WLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQR 511 (746)
T ss_pred HHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHH
Confidence 99832 34443333 37999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeEEEEeccc
Q 008430 462 IGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 462 ~GR~~R~g~~g~~~~~~~~~ 481 (565)
.|| ||+ +.|.++++++..
T Consensus 512 rGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 512 RGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred hcc-ccc-cCCeEEEEEcch
Confidence 999 998 558888888743
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.6e-36 Score=330.09 Aligned_cols=326 Identities=25% Similarity=0.312 Sum_probs=235.7
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.++++||.+++..++.+ ++|+++|||+|||+++++++...+.. .+.++|||+|+++|+.|+.+.++++++..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 47899999999988877 89999999999999998877766532 36789999999999999999999987532
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCC
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
...+..++|+...... .....+++|+|+||+.+...+....+.+.++++|||||||++........+...+.......
T Consensus 86 -~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 86 -EEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred -CceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 3567778888766543 34456789999999999888877788889999999999999875433333333333334456
Q ss_pred cEEEEEeecChHH---HHHHHHHcCCCeEEEeCCcCC-----CCCceEEEEEEe--------------------------
Q 008430 302 QTLLFSATMPVEI---EALAQEYLTDPVQVKVGKVSS-----PTANVIQILEKV-------------------------- 347 (565)
Q Consensus 302 ~~l~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------------------------- 347 (565)
++++|||||.... ...+..+....+.+....... ....+......+
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6999999995332 222222211111110000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008430 348 -------------------------------------------------------------------------------- 347 (565)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (565)
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence
Q ss_pred --------------------ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCC
Q 008430 348 --------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGG 407 (565)
Q Consensus 348 --------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~ 407 (565)
....|...+.+.+.+.. ...+..++||||+++..|+.+.+.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~-----~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~ 398 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQL-----GKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ 398 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHH-----hcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcc
Confidence 00011111111111110 11355689999999999999999999999999999886
Q ss_pred --------CCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec
Q 008430 408 --------RNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 408 --------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
+++.+|..++++|++|+.+|||+|+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++++.
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~ 477 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIA 477 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999865 88888887
Q ss_pred cccH
Q 008430 480 DRDM 483 (565)
Q Consensus 480 ~~~~ 483 (565)
....
T Consensus 478 ~~t~ 481 (773)
T PRK13766 478 KGTR 481 (773)
T ss_pred CCCh
Confidence 6543
No 68
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.9e-36 Score=313.18 Aligned_cols=361 Identities=21% Similarity=0.264 Sum_probs=236.9
Q ss_pred EEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH---
Q 008430 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ--- 238 (565)
Q Consensus 162 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 238 (565)
|+.|+||+|||.+|+ .++...+. .|+++||++|+++|+.|+++.|++.++ ..+..+.++....+.
T Consensus 1 LL~g~TGsGKT~v~l-~~i~~~l~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYL-QAIEKVLA-------LGKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHH
Confidence 578999999999994 44555554 377899999999999999999998763 457778887765443
Q ss_pred -HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-----CH-HHHHHHHHhCCCCCcEEEEEeecC
Q 008430 239 -RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-PQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 239 -~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-----~~-~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.....+.++|||||+..++ .++.++++|||||+|.....+ |. ..+. ++.....+.++|++||||+
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCCCC
Confidence 3334467899999999885 567889999999999876322 11 1122 2223334678999999998
Q ss_pred hHHHHHHHHHcCCCeEEEeCC--cCCCCCceEEEEEEeccch----HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccc
Q 008430 312 VEIEALAQEYLTDPVQVKVGK--VSSPTANVIQILEKVSENE----KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT 385 (565)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~ 385 (565)
.+....+... ....+.... .....+.+. +....... -...+++.+.+....+ .++|||+|++.
T Consensus 141 les~~~~~~g--~~~~~~l~~r~~~~~~p~v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g-------~qvLvflnrrG 209 (505)
T TIGR00595 141 LESYHNAKQK--AYRLLVLTRRVSGRKPPEVK--LIDMRKEPRQSFLSPELITAIEQTLAAG-------EQSILFLNRRG 209 (505)
T ss_pred HHHHHHHhcC--CeEEeechhhhcCCCCCeEE--EEecccccccCCccHHHHHHHHHHHHcC-------CcEEEEEeCCc
Confidence 7655444221 111111111 111111111 11111111 1234455554444332 24999988776
Q ss_pred hH------------------------------------------------------------HHHHHHHHHc--CCceeE
Q 008430 386 RC------------------------------------------------------------DEVSEALVAE--GLHAVA 403 (565)
Q Consensus 386 ~a------------------------------------------------------------~~l~~~l~~~--~~~~~~ 403 (565)
.+ +.+.+.|.+. +.++..
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~ 289 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIAR 289 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEE
Confidence 52 7778888776 778999
Q ss_pred ecCCCCHHHH--HHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE--cCCCCC----------cccceecccccccCC
Q 008430 404 LHGGRNQSDR--ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--LDLPKT----------VEDYVHRIGRTGRGG 469 (565)
Q Consensus 404 ~~~~~~~~~r--~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~--~~~~~s----------~~~~~Q~~GR~~R~g 469 (565)
+|++++...+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+. +|...+ ...|+|++||+||.+
T Consensus 290 ~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 290 IDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred EecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 9999887665 89999999999999999999999999999999864 443322 345799999999999
Q ss_pred CceeEEEEeccccHHHHHH---------HHHHHHhhhcCCcchhhhhh--------HHHHHHHHHHHHhcCccccccccc
Q 008430 470 SMGQATSFYTDRDMLLVAQ---------IKKAIVDAESGNAVAFATGK--------VARRKEREAAAAQKGATVATSKLS 532 (565)
Q Consensus 470 ~~g~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 532 (565)
+.|.+++.....+...+.. ....+.+.+..+..+|...- .....+........-.......+.
T Consensus 370 ~~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 449 (505)
T TIGR00595 370 DPGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLE 449 (505)
T ss_pred CCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcE
Confidence 9999998776665544333 34556666666655544321 111111111111100011122467
Q ss_pred ccCCC----ccchhHHHHHHhcccc
Q 008430 533 MMGPS----VNIEDKYRFMIAASNM 553 (565)
Q Consensus 533 ~~g~~----~~~~~~yr~~~~~~~~ 553 (565)
++||. .|++++|||+|+.+-.
T Consensus 450 ~lgP~~~~~~k~~~~~r~~~l~k~~ 474 (505)
T TIGR00595 450 VLGPSPAPIAKIAGRYRYQILLKSK 474 (505)
T ss_pred EeCCccccchhhcCeeEEEEEEEcC
Confidence 89998 8999999999997753
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.3e-36 Score=307.46 Aligned_cols=300 Identities=20% Similarity=0.188 Sum_probs=203.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH---
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA--- 236 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 236 (565)
++++.||||+|||++|+++++..+... .+.+++|++|+++|+.|+++.++.+++. .++.+.++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHh
Confidence 479999999999999999988775432 3678999999999999999999998753 334444432210
Q ss_pred ---------HHHHHH------hCCCcEEEEccHHHHHHHHcCC----CCCC--CceEEEecchhHhhcCCCHHHHHHHHH
Q 008430 237 ---------EQRSEL------RGGVSIVVATPGRFLDHLQQGN----TSLS--RVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 237 ---------~~~~~~------~~~~~ilv~T~~~l~~~l~~~~----~~~~--~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
...... ....+|+|+||+.+...+.... ..+. ..++|||||+|.+.+.++.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 000000 1236799999999987766421 1111 23789999999988654333 444444
Q ss_pred hCC-CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEe--ccchHHHHHHHHHHHHHHhhhhcCC
Q 008430 296 NLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 296 ~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~ 372 (565)
.+. .+.|+++||||++..+..........+........... ....+.+... ....+...+...+.. . .
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~-~-------~ 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEF-I-------K 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHH-h-------h
Confidence 443 46789999999987666655544332111111100000 0001111111 111222223222211 1 1
Q ss_pred CCCeEEEEecccchHHHHHHHHHHcCC--ceeEecCCCCHHHHHH----HHHHhhcCCceEEEEcCcccCCCCccCccEE
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRES----ALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vLv~T~~~~~Gidip~v~~V 446 (565)
.+.++||||+++++|+.+++.|.+.+. .+..+||++++.+|.+ +++.|++|+..|||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 234699999999999999999988776 4899999999999976 48999999999999999999999996 8888
Q ss_pred EEcCCCCCcccceecccccccCCCc----eeEEEEecccc
Q 008430 447 VNLDLPKTVEDYVHRIGRTGRGGSM----GQATSFYTDRD 482 (565)
Q Consensus 447 i~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~~~~ 482 (565)
|++..| +..|+||+||+||.|+. |.++++....+
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 888766 77899999999998754 36777776554
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.3e-35 Score=310.87 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=237.5
Q ss_pred CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|. .|+++|..+...+..|+ |+.+.||+|||+++++|++...+. |+.++|++|+++||.|.++.+..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 354 89999999999998886 999999999999999999866654 7789999999999999999999999
Q ss_pred hcCCCceEEEEECCCC-HHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCCCceEEEecchhHhh-cCC----
Q 008430 219 RSLDSFKTAIVVGGTN-IAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG---- 285 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~H~~~-~~~---- 285 (565)
..+ ++.++++.|+.. ..+.. ....++|+++|++.| ++++.... ..+..+.++||||+|.++ +..
T Consensus 144 ~~l-Gl~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 144 EFL-GLTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred hhc-CCeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 887 799999999988 44433 235699999999999 66555432 345779999999999754 110
Q ss_pred -----------CHHHHHHHHHhCCCC--------C---------------------------------------------
Q 008430 286 -----------FEPQIREVMQNLPDK--------H--------------------------------------------- 301 (565)
Q Consensus 286 -----------~~~~~~~i~~~~~~~--------~--------------------------------------------- 301 (565)
.......+...+... .
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 111122222222110 0
Q ss_pred ----------------------------------------------------------------cEEEEEeecChHHHHH
Q 008430 302 ----------------------------------------------------------------QTLLFSATMPVEIEAL 317 (565)
Q Consensus 302 ----------------------------------------------------------------~~l~~SAT~~~~~~~~ 317 (565)
.+.|||+|....-.++
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 2344555553333333
Q ss_pred HHHHcCCCeEEEeCCcCCCCC-ceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH
Q 008430 318 AQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~ 396 (565)
...|-.+. +.+.. ..+.. .-...........|...++..+..... .+.++||||++++.++.++..|.+
T Consensus 381 ~~~Y~l~v--~~IPt-~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~-------~~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 381 FEVYNMEV--VQIPT-NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHE-------TGRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred HHHhCCcE--EECCC-CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHH
Confidence 22222111 11111 11111 011122344566777777777765322 233699999999999999999999
Q ss_pred cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCc---cCcc-----EEEEcCCCCCcccceecccccccC
Q 008430 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV---MGVA-----HVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 397 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi---p~v~-----~Vi~~~~~~s~~~~~Q~~GR~~R~ 468 (565)
.|+++..+||.+.+.++..+...++.| .|+|||++++||+|| |+|. +||+++.|.+...|+||+||+||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 999999999999988888888877766 699999999999999 7998 999999999999999999999999
Q ss_pred CCceeEEEEeccccHHH
Q 008430 469 GSMGQATSFYTDRDMLL 485 (565)
Q Consensus 469 g~~g~~~~~~~~~~~~~ 485 (565)
|.+|.++.+++..|...
T Consensus 529 G~~G~s~~~is~eD~l~ 545 (790)
T PRK09200 529 GDPGSSQFFISLEDDLL 545 (790)
T ss_pred CCCeeEEEEEcchHHHH
Confidence 99999999999876544
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.4e-36 Score=322.41 Aligned_cols=338 Identities=22% Similarity=0.305 Sum_probs=263.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
..+..++.+.|+..|+++|.+|+..+.+|++++|..+||||||++|++|+++.++..+ ..++|||.|+++|++.
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~D 130 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAND 130 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHhh
Confidence 4457888899999999999999999999999999999999999999999999999863 3479999999999999
Q ss_pred HHHHHHHHhhcCC-CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC----CCCCCceEEEecchhHhhcC
Q 008430 210 IEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDM 284 (565)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~----~~~~~~~~iIiDE~H~~~~~ 284 (565)
+.++|+++....+ .+.+..++|++...+......+.++||+|+|++|...+.... ..+.++++||+||+|..-.-
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999998875 588899999999888877888999999999999987555432 34667999999999964321
Q ss_pred ---CCHH---HHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec-----c---c
Q 008430 285 ---GFEP---QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-----E---N 350 (565)
Q Consensus 285 ---~~~~---~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~ 350 (565)
..+- .+..++...+...|+|+.|||.... .+....++...+...+.....+............ . .
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRR 289 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhccc
Confidence 1222 3334444455678999999999654 5577777777766644433333333322222220 0 1
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHH----HHHHHcC----CceeEecCCCCHHHHHHHHHHhhc
Q 008430 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS----EALVAEG----LHAVALHGGRNQSDRESALRDFRN 422 (565)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~ 422 (565)
..... ...+...... .+-++|+|+.++..++.+. ..+...+ ..+..+++++..++|..+...|+.
T Consensus 290 s~~~~-~~~~~~~~~~------~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 290 SALAE-LATLAALLVR------NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred chHHH-HHHHHHHHHH------cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 11111 2222222211 2235999999999999997 4444445 568889999999999999999999
Q ss_pred CCceEEEEcCcccCCCCccCccEEEEcCCCC-CcccceecccccccCCCceeEEEEeccc
Q 008430 423 GSTNILVATDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 423 g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|++.++++|.+++-|+|+.+++.||....|. +...|.||.||+||.++.+.+++++..+
T Consensus 363 g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 363 GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999999999999999999999 8999999999999999878777777643
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-36 Score=312.93 Aligned_cols=318 Identities=17% Similarity=0.170 Sum_probs=218.5
Q ss_pred CCCCHHHHHHHHhHhC-C--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~-g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..|++||++|+..+.. | +..++++|||+|||++++. ++..+ +.++|||||+..|+.||.++|.+++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~-aa~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVT-AACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHH-HHHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4789999999999873 3 3689999999999999854 33332 3459999999999999999999986
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc--------CCCCCCCceEEEecchhHhhcCCCHHHH
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--------GNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~--------~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
.. ....+..++|+.... .....+|+|+|++++.....+ ..+....+++||+||||++. ...+
T Consensus 323 ~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred CC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 43 234566666654221 123478999999988532211 11333568999999999986 5667
Q ss_pred HHHHHhCCCCCcEEEEEeecChHHHH--HHHHHcCCCeEEEeCCcC----CCCCceEE--EEEEeccc------------
Q 008430 291 REVMQNLPDKHQTLLFSATMPVEIEA--LAQEYLTDPVQVKVGKVS----SPTANVIQ--ILEKVSEN------------ 350 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~------------ 350 (565)
.+++..+.... .||+||||..+... .+..+++ |..+...... .....+.. +...+...
T Consensus 393 r~il~~l~a~~-RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQAHC-KLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcCcCc-EEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 77887776544 79999999654322 2222333 3333221111 00111111 11111111
Q ss_pred ---------hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhh
Q 008430 351 ---------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR 421 (565)
Q Consensus 351 ---------~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 421 (565)
.|...+..++.. ....+.++||||.+..+++.+++.|. +..+||++++.+|..+++.|+
T Consensus 471 k~~l~~~np~K~~~~~~Li~~-------he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRF-------HEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHH-------HhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHH
Confidence 111111111111 11245579999999999999998872 567899999999999999998
Q ss_pred cC-CceEEEEcCcccCCCCccCccEEEEcCCC-CCcccceecccccccCCCceeE-------EEEeccc--cHHHHHHHH
Q 008430 422 NG-STNILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQA-------TSFYTDR--DMLLVAQIK 490 (565)
Q Consensus 422 ~g-~~~vLv~T~~~~~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~--~~~~~~~l~ 490 (565)
.| ++++||+|+++++|+|+|++++||++++| .|...|+||+||++|.+..|.+ +.+++.+ +..+..+-.
T Consensus 539 ~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq 618 (732)
T TIGR00603 539 HNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQ 618 (732)
T ss_pred hCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHH
Confidence 75 88999999999999999999999999987 5999999999999998876664 7777765 444444444
Q ss_pred HHHH
Q 008430 491 KAIV 494 (565)
Q Consensus 491 ~~~~ 494 (565)
+.+.
T Consensus 619 ~fl~ 622 (732)
T TIGR00603 619 RFLV 622 (732)
T ss_pred HHHH
Confidence 4443
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-36 Score=285.75 Aligned_cols=341 Identities=18% Similarity=0.281 Sum_probs=245.6
Q ss_pred HHHHHHH-CCCCCC-CHHHHHHHHhHhCCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 132 IMKDIEF-HEYTRP-TSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 132 i~~~l~~-~~~~~~-~~~Q~~~l~~l~~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
+-++|++ +|+.+. ++.|+.|+..+..++ |+.|++|||+||++||.+|.+.. +...||+.|..+|.+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 3344533 355443 789999999998775 89999999999999999999865 447899999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH------hCCCcEEEEccHHHH----HHHHcCCCCCCCceEEEecch
Q 008430 209 QIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL------RGGVSIVVATPGRFL----DHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 209 Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~ilv~T~~~l~----~~l~~~~~~~~~~~~iIiDE~ 278 (565)
...+.+.++ .+.+.-+....+..+..+.+ .....+++-||+.-. .-+.+....-+-+.|+|+|||
T Consensus 76 DQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 988888776 23444444444333332222 345779999998752 222222233445899999999
Q ss_pred hHhhcCC--CHHHHHHHH--HhCCCCCcEEEEEeecChHHHHHHHH--HcCCCeEEEeCCcCCCCCceEEEEEEec-cch
Q 008430 279 DRMLDMG--FEPQIREVM--QNLPDKHQTLLFSATMPVEIEALAQE--YLTDPVQVKVGKVSSPTANVIQILEKVS-ENE 351 (565)
Q Consensus 279 H~~~~~~--~~~~~~~i~--~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 351 (565)
|+...|| |.+.|.++= +..-+....|.+|||....+++.+.. .+.+|+.+.-. .....++......-. -.+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~~I~D 228 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKSFITD 228 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHHHhhh
Confidence 9999886 777766542 22223556899999999998776644 34555543221 111112111000000 011
Q ss_pred HHHHHHHHHHHHH----HhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceE
Q 008430 352 KVDRLLALLVEEA----FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 352 k~~~l~~~l~~~~----~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
-...|.+...... ...+......+..||||.+++.|+.++-.|...|+++..+|+++...+|.++.+.|-++++.|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 1122222221111 111112233456999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHH
Q 008430 428 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 490 (565)
|++|..+++|||-|+|+.||+.+++.+..-|.|-.|||||+|....|-++|..+|...+..|.
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988777653
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=9.3e-35 Score=302.41 Aligned_cols=320 Identities=21% Similarity=0.254 Sum_probs=238.7
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|..+...+..|+ |..++||+|||++|++|++...+. |..++|++|+++||.|.++.+.+++..+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 478999999999888876 999999999999999999655443 5569999999999999999999999886
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhhc-CCCHH-----
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLD-MGFEP----- 288 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~~-~~~~~----- 288 (565)
++++++++|+....+..... .++|+++|+..| ++++..+ ...+..+.++||||+|.++- ....+
T Consensus 125 -GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 125 -GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred -CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 69999999998876554433 589999999999 8888765 24677899999999998653 11000
Q ss_pred -------H---HHHHHHhCCC--------C--------------------------------------------------
Q 008430 289 -------Q---IREVMQNLPD--------K-------------------------------------------------- 300 (565)
Q Consensus 289 -------~---~~~i~~~~~~--------~-------------------------------------------------- 300 (565)
. ...+...+.. .
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0 0111111110 0
Q ss_pred -----------------------------------------------------------CcEEEEEeecChHHHHHHHHH
Q 008430 301 -----------------------------------------------------------HQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 301 -----------------------------------------------------------~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++.|||+|...+..++...|
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 023445555543333333333
Q ss_pred cCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCce
Q 008430 322 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~ 401 (565)
-.+.+.+.... .....+ .....+....+|...+++.+.+.... +.|+||||+++..++.+++.|.+.|+++
T Consensus 362 ~l~vv~IPtnk-p~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~-------grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 362 NLEVVVVPTNR-PVIRKD-LSDLVYKTEEEKWKAVVDEIKERHAK-------GQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred CCCEEEeCCCC-Ceeeee-CCCeEEcCHHHHHHHHHHHHHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 22211111110 000011 11123344556777777766555432 3369999999999999999999999999
Q ss_pred eEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccC-------ccEEEEcCCCCCcccceecccccccCCCceeE
Q 008430 402 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG-------VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 474 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~-------v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 474 (565)
..+|+. +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|+.||+||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 789999999999999999999999999999998 55999999999999999999999999999999
Q ss_pred EEEeccccHHH
Q 008430 475 TSFYTDRDMLL 485 (565)
Q Consensus 475 ~~~~~~~~~~~ 485 (565)
..+++.+|...
T Consensus 511 ~~~ls~eD~l~ 521 (745)
T TIGR00963 511 RFFLSLEDNLM 521 (745)
T ss_pred EEEEeccHHHH
Confidence 99999887554
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.5e-34 Score=302.91 Aligned_cols=320 Identities=21% Similarity=0.215 Sum_probs=225.4
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+++|..+...+..| .++.++||+|||++|++|++...+. ++.++||+|+++|+.|+.+.+..++..+
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L- 138 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL- 138 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc-
Confidence 4555555555444444 7999999999999999998766553 5569999999999999999999998876
Q ss_pred CceEEEEECCCC---HHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhhc-CC------
Q 008430 223 SFKTAIVVGGTN---IAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLD-MG------ 285 (565)
Q Consensus 223 ~~~~~~~~g~~~---~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~~-~~------ 285 (565)
++.++..+++.. ..........+++|+++||++| ++.+... ...+..+.++||||||.++- ..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 688888776521 2222223335799999999999 5655332 34467899999999998742 11
Q ss_pred ---------CHHHHHHHHHhCCCC--------------------------------------------------------
Q 008430 286 ---------FEPQIREVMQNLPDK-------------------------------------------------------- 300 (565)
Q Consensus 286 ---------~~~~~~~i~~~~~~~-------------------------------------------------------- 300 (565)
.......+...+.+.
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111111222222110
Q ss_pred -------------------------------------------------------------CcEEEEEeecChHHHHHHH
Q 008430 301 -------------------------------------------------------------HQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 301 -------------------------------------------------------------~~~l~~SAT~~~~~~~~~~ 319 (565)
.++.|||+|....-.++..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 0344556665433333333
Q ss_pred HHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCC
Q 008430 320 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~ 399 (565)
-|-.+. +.+...............+....+|...++..+...... +.++||||++++.++.+++.|.+.|+
T Consensus 379 iY~l~v--~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~-------~~pvLIft~s~~~se~ls~~L~~~gi 449 (762)
T TIGR03714 379 TYSLSV--VKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHET-------GQPVLLITGSVEMSEIYSELLLREGI 449 (762)
T ss_pred HhCCCE--EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhC-------CCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 222111 111111100011112234556677888888777664322 23699999999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCcc---------CccEEEEcCCCCCcccceecccccccCCC
Q 008430 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---------GVAHVVNLDLPKTVEDYVHRIGRTGRGGS 470 (565)
Q Consensus 400 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip---------~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~ 470 (565)
++..+||.+.+.++..+...++.| .|+|||++++||+||| ++.+|+++++|....+ +||.||+||.|.
T Consensus 450 ~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~ 526 (762)
T TIGR03714 450 PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGD 526 (762)
T ss_pred CEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCC
Confidence 999999999999988888777777 6999999999999999 9999999999977666 999999999999
Q ss_pred ceeEEEEeccccHHH
Q 008430 471 MGQATSFYTDRDMLL 485 (565)
Q Consensus 471 ~g~~~~~~~~~~~~~ 485 (565)
+|.++.|++.+|...
T Consensus 527 ~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 527 PGSSQFFVSLEDDLI 541 (762)
T ss_pred ceeEEEEEccchhhh
Confidence 999999999876554
No 76
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.2e-36 Score=306.58 Aligned_cols=299 Identities=22% Similarity=0.246 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHhHhC----CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~----g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+++|++|+..+.. ++..++++|||+|||++++.. +..+ +..+|||||+++|+.||.+.+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~-~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEA-IAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHH-HHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 788999999999999998543 3332 333999999999999999888887
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCC-CcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHh
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
+... ..++.+.|+.. ... ..|+|+|.+++........+..+.+++||+|||||+. ...+..+...
T Consensus 104 ~~~~--~~~g~~~~~~~--------~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~----a~~~~~~~~~ 169 (442)
T COG1061 104 LLLN--DEIGIYGGGEK--------ELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP----APSYRRILEL 169 (442)
T ss_pred cCCc--cccceecCcee--------ccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC----cHHHHHHHHh
Confidence 6431 23445555432 112 4699999999987532233555579999999999988 4445666666
Q ss_pred CCCCCcEEEEEeecChHHHHH---HHHHcCCCeEEEeCCcCC----CCCceEEEEEEe--ccchHHHHH--H--------
Q 008430 297 LPDKHQTLLFSATMPVEIEAL---AQEYLTDPVQVKVGKVSS----PTANVIQILEKV--SENEKVDRL--L-------- 357 (565)
Q Consensus 297 ~~~~~~~l~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~k~~~l--~-------- 357 (565)
+.....++|+||||+...... +..+++ +..+....... ............ ...+..... .
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 654433899999987554212 222222 23332221110 001111111111 111000000 0
Q ss_pred -----------HHH------HHHHHhhhhcCC-CCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHH
Q 008430 358 -----------ALL------VEEAFLAEKSCH-PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 358 -----------~~l------~~~~~~~~~~~~-~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
..+ ...........+ ...+++|||.++.++..++..|...++ +..+++.++..+|.++++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 000 000000000001 244699999999999999999999888 8899999999999999999
Q ss_pred hhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceeccccccc
Q 008430 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGR 467 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R 467 (565)
|+.|++++||++.++.+|+|+|+++++|+.+++.|...|+||+||+.|
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-35 Score=317.98 Aligned_cols=327 Identities=21% Similarity=0.310 Sum_probs=254.5
Q ss_pred HHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
..+|....++-|.+||..++.|++++|.+|||.||++||.+|++-. ++..|||.|.++|.+.+...+..
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhhh
Confidence 5779999999999999999999999999999999999999998764 55799999999999877766633
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHH----HhC--CCcEEEEccHHHHHHH--HcCCCCCCC---ceEEEecchhHhhcCC
Q 008430 217 LSRSLDSFKTAIVVGGTNIAEQRSE----LRG--GVSIVVATPGRFLDHL--QQGNTSLSR---VSFVILDEADRMLDMG 285 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~----~~~--~~~ilv~T~~~l~~~l--~~~~~~~~~---~~~iIiDE~H~~~~~~ 285 (565)
. ++....+.++....++... ..+ .++|++.||+++...- ......+.. +.++||||||+...|+
T Consensus 327 ~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 327 K-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred c-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 2 6788888888877533322 233 5899999999985321 111122333 8899999999999886
Q ss_pred --CHHHHHHH---HHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008430 286 --FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 286 --~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (565)
|++.|.++ ...++ ...++++|||....+...+-..++-...... .......++...+..-........+...+
T Consensus 402 HdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~-~~sfnR~NL~yeV~~k~~~~~~~~~~~~~ 479 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELF-KSSFNRPNLKYEVSPKTDKDALLDILEES 479 (941)
T ss_pred ccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCccee-cccCCCCCceEEEEeccCccchHHHHHHh
Confidence 88887765 33444 3669999999998888777766553222211 12223334433222222112222222222
Q ss_pred HHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCc
Q 008430 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
. ...+...+||||.++.+|+.++..|...|+.+..||++|+..+|..+.+.|..++++|+|||=+|++|||.
T Consensus 480 ~--------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 480 K--------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred h--------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 2 12444569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
|+|+.||||..|.|.+.|.|-+|||||+|....|++|+...|...++.+
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999987666655
No 78
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9.4e-36 Score=280.73 Aligned_cols=295 Identities=29% Similarity=0.503 Sum_probs=227.7
Q ss_pred eEEEEccchhhHHHHHHHHHHHhhcC--CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEE
Q 008430 196 LALVLAPTRELAQQIEKEVKALSRSL--DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 196 ~~lil~P~~~L~~Q~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~i 273 (565)
.++|+-|.++|++|..+.++++-... +.++..++.||....++...+..+.+|+|+||+++.+.+..+.+.+....++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 78999999999999999666654332 3456668899999999999999999999999999999999999999999999
Q ss_pred EecchhHhhcCCCHHHHHHHHHhCCC------CCcEEEEEeecC-hHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEE
Q 008430 274 ILDEADRMLDMGFEPQIREVMQNLPD------KHQTLLFSATMP-VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK 346 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~~~------~~~~l~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (565)
|+||++.++..+|.+.+.++...++. +.|.+++|||+. -++.......+.-|..+.+...+..+..+.++...
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 99999999999988888887766652 468899999984 22333444455556666555444444443333322
Q ss_pred ecc------------------------------chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH
Q 008430 347 VSE------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 347 ~~~------------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~ 396 (565)
+.. .+........+...........+...++||||.++..|+.|.+++++
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 210 11111222222222222222334556799999999999999999998
Q ss_pred cC---CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCcee
Q 008430 397 EG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 473 (565)
Q Consensus 397 ~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 473 (565)
+| +.|+.+||+..+.+|.+.++.|+.+++++|||||++++|+||..+-.+|+...|.....|+||+||+||+.+-|.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcce
Confidence 74 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHH
Q 008430 474 ATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 474 ~~~~~~~~~~~~~~~l~ 490 (565)
++.++-..-.+.....+
T Consensus 608 aislvat~~ekvwyh~c 624 (725)
T KOG0349|consen 608 AISLVATVPEKVWYHWC 624 (725)
T ss_pred eEEEeeccchheeehhh
Confidence 99887654433333333
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.6e-34 Score=286.19 Aligned_cols=297 Identities=19% Similarity=0.184 Sum_probs=201.6
Q ss_pred HHHHHHHhHhCCCC--EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC---
Q 008430 147 IQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 221 (565)
Q Consensus 147 ~Q~~~l~~l~~g~~--~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~--- 221 (565)
+|.++++.+.++++ +++++|||+|||++|+++++.. +.+++|++|+++|+.|+++.++.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999888742 3458999999999999999999988533
Q ss_pred CCceEEEEECCCCHH--HHH------------------HHHhCCCcEEEEccHHHHHHHHcCC--------CCCCCceEE
Q 008430 222 DSFKTAIVVGGTNIA--EQR------------------SELRGGVSIVVATPGRFLDHLQQGN--------TSLSRVSFV 273 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~--~~~------------------~~~~~~~~ilv~T~~~l~~~l~~~~--------~~~~~~~~i 273 (565)
.+..+..+.|..... ... ......++|+++||+.|..++.... ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 245555566642221 000 0112357899999999976654321 124679999
Q ss_pred EecchhHhhcCCC-----HHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH--cCCCeEEEeCC-----c------CC
Q 008430 274 ILDEADRMLDMGF-----EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY--LTDPVQVKVGK-----V------SS 335 (565)
Q Consensus 274 IiDE~H~~~~~~~-----~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-----~------~~ 335 (565)
||||+|.+..... ...+..++.......+++++|||++..+...+... +..+.....+. . ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999998764331 11233333333334689999999998877777664 44444332222 0 00
Q ss_pred -------CCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC--CceeEecC
Q 008430 336 -------PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHAVALHG 406 (565)
Q Consensus 336 -------~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~--~~~~~~~~ 406 (565)
..+.+...+.. ....+...+...+ +...... ...++.++||||+++..++.+++.|++.+ +.+..+||
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~-~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELA-EEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHH-HHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 00123322222 2222322222222 2111111 11234579999999999999999999865 57888999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccc
Q 008430 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTG 466 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~ 466 (565)
.+++.+|.+. ++.+|||||+++++|||+|.+ +|| ++ |.+...|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999988754 478899999999999999986 566 45 788999999999997
No 80
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-34 Score=298.57 Aligned_cols=389 Identities=21% Similarity=0.249 Sum_probs=273.9
Q ss_pred CCCCHHHHHHHHhHhCC----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..+++.|+.|++.+... ...|+.|.||||||.+| +.++...+.+ |+.+|++||.++|..|+.++|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 46789999999999765 46999999999999999 6677777764 888999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcC-----CCHHHHHH
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-----GFEPQIRE 292 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~-----~~~~~~~~ 292 (565)
++....+-+..+..+.....|.....+...|||||...++ .+++++++|||||-|...-. .|...-..
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 9643344455555566667777778899999999999998 88999999999999965421 13334444
Q ss_pred HHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEe--ccch--HHHHHHHHHHHHHHhhh
Q 008430 293 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV--SENE--KVDRLLALLVEEAFLAE 368 (565)
Q Consensus 293 i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--k~~~l~~~l~~~~~~~~ 368 (565)
++..-..++++|+.||||+.+....+.........+.........+.+..+.... ...+ -...+++.+.+....++
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 5555555788999999998776555533311111111111111122222111111 1111 22566666666554444
Q ss_pred hcCCCCCeEEEEecccchH------------------------------------------------------------H
Q 008430 369 KSCHPFPLTIVFVERKTRC------------------------------------------------------------D 388 (565)
Q Consensus 369 ~~~~~~~~~liF~~s~~~a------------------------------------------------------------~ 388 (565)
++|+|.|++..+ +
T Consensus 422 -------Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gte 494 (730)
T COG1198 422 -------QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTE 494 (730)
T ss_pred -------eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHH
Confidence 499999998876 7
Q ss_pred HHHHHHHHc--CCceeEecCCCCHH--HHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCC--C---------
Q 008430 389 EVSEALVAE--GLHAVALHGGRNQS--DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP--K--------- 453 (565)
Q Consensus 389 ~l~~~l~~~--~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~--~--------- 453 (565)
.+++.|... +.+++.++++.+.. .-+..++.|.+|+.+|||+|+|++.|.|+|++++|..++.. .
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~E 574 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHH
Confidence 777777665 66788888877653 35788999999999999999999999999999998655433 2
Q ss_pred -CcccceecccccccCCCceeEEEEeccccHHHHHHH---------HHHHHhhhcCCcchhhhh--------hHHHHHHH
Q 008430 454 -TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFATG--------KVARRKER 515 (565)
Q Consensus 454 -s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 515 (565)
....+.|..|||||.+.+|.+++.....|...+..+ ++++..++...+.+|... ......+.
T Consensus 575 r~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~ 654 (730)
T COG1198 575 RTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIASAKNEEKALEF 654 (730)
T ss_pred HHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeEecCCCHHHHHHH
Confidence 234459999999999999999999999987777665 466677766666665543 11222222
Q ss_pred HHHHHhcCcccccccccccCCC----ccchhHHHHHHhccc
Q 008430 516 EAAAAQKGATVATSKLSMMGPS----VNIEDKYRFMIAASN 552 (565)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~g~~----~~~~~~yr~~~~~~~ 552 (565)
.......-.......+.++||. .+++++|||||+-+-
T Consensus 655 ~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~ 695 (730)
T COG1198 655 ARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKS 695 (730)
T ss_pred HHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEec
Confidence 2222211111223348899998 999999999998764
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8e-34 Score=294.24 Aligned_cols=344 Identities=19% Similarity=0.255 Sum_probs=241.1
Q ss_pred HHHCCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEccchhhHHHHHH
Q 008430 136 IEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~P~~~L~~Q~~~ 212 (565)
...+++.+++.+|.+++|.+.+. .|+|||||||+|||.+|++.++..+.++. .....++.+++||+|.++||.++++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 34567889999999999999865 48999999999999999999998777522 1223467889999999999999999
Q ss_pred HHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC---CCCCCCceEEEecchhHhhcCCCHHH
Q 008430 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTSLSRVSFVILDEADRMLDMGFEPQ 289 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~---~~~~~~~~~iIiDE~H~~~~~~~~~~ 289 (565)
.|.+.+... ++.+..++|+....... -..++|||+|||++.-.-++. ...+..+++|||||+|.+-+ ..++.
T Consensus 183 ~~~kkl~~~-gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpv 257 (1230)
T KOG0952|consen 183 KFSKKLAPL-GISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPV 257 (1230)
T ss_pred HHhhhcccc-cceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccch
Confidence 999988765 79999999998765543 245999999999994332222 12355689999999996644 45666
Q ss_pred HHHHHHhC-------CCCCcEEEEEeecChHHHHHHHHHcCCC--eEEEeCCcCCCCCceEEEEEEeccc---hHHHHHH
Q 008430 290 IREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSEN---EKVDRLL 357 (565)
Q Consensus 290 ~~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~ 357 (565)
++.|+.+. ....++|++|||+|+-. .+..|++-+ ..+......-.+..+.+.+...... .....+-
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~e--DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNYE--DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCHH--HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 66665443 34678999999998653 333444432 2222222222222333333333322 1111111
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC-----------------------CceeEecCCCCHHHHH
Q 008430 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-----------------------LHAVALHGGRNQSDRE 414 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~-----------------------~~~~~~~~~~~~~~r~ 414 (565)
+......... ...+++++|||.++......|+.|.+.. .....+|+||...+|.
T Consensus 336 ~~~~~kv~e~---~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 336 EVCYDKVVEF---LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred HHHHHHHHHH---HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 1111111111 1234569999999999988888886631 2356789999999999
Q ss_pred HHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cCCCC------CcccceecccccccC--CCceeEEEEecccc
Q 008430 415 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LDLPK------TVEDYVHRIGRTGRG--GSMGQATSFYTDRD 482 (565)
Q Consensus 415 ~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~~~~------s~~~~~Q~~GR~~R~--g~~g~~~~~~~~~~ 482 (565)
.+.+.|..|.++||+||..++.|+|+|+--++|- ||.-. +.-+.+|..|||||- +..|.++++.+.+.
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 9999999999999999999999999996444442 33322 345569999999994 46799998888776
Q ss_pred HHHHHHH
Q 008430 483 MLLVAQI 489 (565)
Q Consensus 483 ~~~~~~l 489 (565)
...+..+
T Consensus 493 l~~Y~sL 499 (1230)
T KOG0952|consen 493 LDHYESL 499 (1230)
T ss_pred HHHHHHH
Confidence 6655443
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.4e-32 Score=278.09 Aligned_cols=339 Identities=22% Similarity=0.273 Sum_probs=254.3
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHhHhCC------CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 130 PSIMKDI-EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 130 ~~i~~~l-~~~~~~~~~~~Q~~~l~~l~~g------~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
..+++.+ ....| +||..|++++..|... -+=|+.|.-|||||+++++.++..+.. |.++.+++|
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEecc
Confidence 3444444 34444 7999999999999854 146899999999999999988877553 888999999
Q ss_pred chhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecch
Q 008430 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 278 (565)
|.-||.|.++.+.+++... ++.+.+++|..........+ .+..+|||+| +.+.++...+.++.+|||||-
T Consensus 320 TEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 320 TEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred HHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 9999999999999999986 59999999988765544333 4669999999 555567788999999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCC-CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (565)
|+++ -.-+..+..... ...++.|||||-+..-.+ ..+.+-..-.+... ++....+...+-..++...++
T Consensus 394 HRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldvS~IdEl---P~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 394 HRFG-----VHQRLALREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDVSIIDEL---PPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred cccc-----HHHHHHHHHhCCCCCcEEEEeCCCchHHHHH--HHhccccchhhccC---CCCCCceEEEEeccccHHHHH
Confidence 9964 333444444444 466999999996654332 23333222222222 222223334444456677777
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEecccchH--------HHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceE
Q 008430 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRC--------DEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~liF~~s~~~a--------~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
+.+.+....+. ++.+.|+-+++. +.+++.|... ++++..+||.|+.+++++++++|++|+++|
T Consensus 464 e~i~~ei~~Gr-------QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 464 ERIREEIAKGR-------QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHcCC-------EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 87777665444 499999877654 5566666643 567999999999999999999999999999
Q ss_pred EEEcCcccCCCCccCccEEEEcCCC-CCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhhhcCC
Q 008430 428 LVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESGN 500 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 500 (565)
||||.+++.|||+|+.++.|+.++- .......|-.||+||.+....|++++.+......++--+.+.+..++.
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF 610 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGF 610 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcc
Confidence 9999999999999999999888764 367788999999999999999999998887444444445555555554
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=261.97 Aligned_cols=340 Identities=19% Similarity=0.293 Sum_probs=255.0
Q ss_pred ccCCCCHHHHHHHH-HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 124 TDMCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 124 ~~~~l~~~i~~~l~-~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
++++.+.+..+-|+ .+...+.+|.|.++++..+.|++++++.|||.||++||.+|++.. .+.+|+|+|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 46677777766664 457788999999999999999999999999999999999999875 556999999
Q ss_pred chhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH------HHhCCCcEEEEccHHHHHH---HH--cCCCCCCCce
Q 008430 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS------ELRGGVSIVVATPGRFLDH---LQ--QGNTSLSRVS 271 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~ilv~T~~~l~~~---l~--~~~~~~~~~~ 271 (565)
..+|.+...-.++.+ ++....+..+.+..+... .......+++.||+.+..- +. ...+....|.
T Consensus 143 lislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 143 LISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred hHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 999999888888887 344555555554433211 1234577999999998421 11 1235566799
Q ss_pred EEEecchhHhhcCC--CHHHHHH--HHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEe
Q 008430 272 FVILDEADRMLDMG--FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV 347 (565)
Q Consensus 272 ~iIiDE~H~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (565)
+|-|||+|+...|| |++.|.. |+..--+...++++|||....+....+..+.-...+.+. .....+++...+..-
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQK 296 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeC
Confidence 99999999999876 6655543 344333456699999999888777666655422211111 122233444333333
Q ss_pred ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceE
Q 008430 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
+.. .+..++.+.+.... .-.+...||||-+++.|+.++..|+..|+.+..+|+.+.++++.-+-+.|..|+++|
T Consensus 297 p~n--~dd~~edi~k~i~~----~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqv 370 (695)
T KOG0353|consen 297 PGN--EDDCIEDIAKLIKG----DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQV 370 (695)
T ss_pred CCC--hHHHHHHHHHHhcc----ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEE
Confidence 322 22333333332211 122335899999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccCCCCccCccEEEEcCCCCCccccee-------------------------------------------cccc
Q 008430 428 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVH-------------------------------------------RIGR 464 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q-------------------------------------------~~GR 464 (565)
+|+|-++++|||-|+|+.||+...|.|...|.| -.||
T Consensus 371 ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgr 450 (695)
T KOG0353|consen 371 IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGR 450 (695)
T ss_pred EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccc
Confidence 999999999999999999999999999999999 6799
Q ss_pred cccCCCceeEEEEeccccHHHH
Q 008430 465 TGRGGSMGQATSFYTDRDMLLV 486 (565)
Q Consensus 465 ~~R~g~~g~~~~~~~~~~~~~~ 486 (565)
+||.+.+..|+++|.-.|....
T Consensus 451 agrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 451 AGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred cccCCCcccEEEEechHHHHhH
Confidence 9999999999999977665443
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.5e-32 Score=296.26 Aligned_cols=333 Identities=19% Similarity=0.203 Sum_probs=213.9
Q ss_pred CCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..|.|||..++..++.. .++|++.++|.|||+.+.+ ++..+... +...++|||||. .|..||..++.+.+.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgl-il~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGM-IIHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHH-HHHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 46999999998877644 3799999999999998854 44444332 134579999996 899999999988763
Q ss_pred cCCCceEEEEECCCCHHHHHH---HHhCCCcEEEEccHHHHHHH-HcCCCCCCCceEEEecchhHhhcCC--CHHHHHHH
Q 008430 220 SLDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDMG--FEPQIREV 293 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~ilv~T~~~l~~~l-~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~~i 293 (565)
+...++.++. ...... ......+++|+|.+.+...- ....+.-..+++|||||||++.... ....+..+
T Consensus 224 ----l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 ----LRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ----CCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 3444443322 111100 11124689999999886421 1111223469999999999996321 12233333
Q ss_pred HHhCCCCCcEEEEEeecChH-HH------------------HH------------------------------HHHHcCC
Q 008430 294 MQNLPDKHQTLLFSATMPVE-IE------------------AL------------------------------AQEYLTD 324 (565)
Q Consensus 294 ~~~~~~~~~~l~~SAT~~~~-~~------------------~~------------------------------~~~~~~~ 324 (565)
.........++++||||... .. .+ +..++.+
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 22222233589999999310 00 00 0001000
Q ss_pred Ce---------------------------------EEEeCCc-----CCCCCceEEEEEEecc-----------------
Q 008430 325 PV---------------------------------QVKVGKV-----SSPTANVIQILEKVSE----------------- 349 (565)
Q Consensus 325 ~~---------------------------------~~~~~~~-----~~~~~~~~~~~~~~~~----------------- 349 (565)
.. .+.+... ..+...........+.
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 00 0000000 0000000000000000
Q ss_pred -------------------chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHH-HcCCceeEecCCCC
Q 008430 350 -------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALHGGRN 409 (565)
Q Consensus 350 -------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~-~~~~~~~~~~~~~~ 409 (565)
+.|...+.+.+. .....++||||+++..+..+++.|. ..|+++..+||+|+
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~---------~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLK---------SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHH---------hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 011111111111 1224579999999999999999994 56999999999999
Q ss_pred HHHHHHHHHHhhcC--CceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHH
Q 008430 410 QSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 487 (565)
Q Consensus 410 ~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 487 (565)
+.+|.++++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++.........
T Consensus 530 ~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e 609 (956)
T PRK04914 530 IIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQE 609 (956)
T ss_pred HHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHH
Confidence 99999999999984 5999999999999999999999999999999999999999999999999987777655444444
Q ss_pred HHHHHHHh
Q 008430 488 QIKKAIVD 495 (565)
Q Consensus 488 ~l~~~~~~ 495 (565)
.+.+.+.+
T Consensus 610 ~i~~~~~~ 617 (956)
T PRK04914 610 RLFRWYHE 617 (956)
T ss_pred HHHHHHhh
Confidence 44444433
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.9e-31 Score=293.08 Aligned_cols=307 Identities=21% Similarity=0.294 Sum_probs=207.4
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch----hhHHHHHHHHHHHhhc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR----ELAQQIEKEVKALSRS 220 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~----~L~~Q~~~~~~~~~~~ 220 (565)
+.+..+.+..+..++.++|+|+||||||.. +|.+...... +....+++.-|++ +|+.|+.+++..-++
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG- 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELG- 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc-
Confidence 334456667776777788999999999984 7754332211 1122355556865 666666666654332
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh-HhhcCCCHHH-HHHHHHhCC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLP 298 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~i~~~~~ 298 (565)
..+++-+.... ....+++|+|+|+++|++.+.... .+..+++||||||| ++++.+|... +..++.. .
T Consensus 148 ---~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-r 216 (1294)
T PRK11131 148 ---GCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-R 216 (1294)
T ss_pred ---ceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-C
Confidence 22322221111 223568999999999999987654 48899999999999 6778776543 3344333 3
Q ss_pred CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccc------hHHHHHHHHHHHHHHhhhhcCC
Q 008430 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN------EKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 299 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~~~~~~~~~~ 372 (565)
++.|+|+||||++.+ .+. .++.+...+.+.... ..+...+...... +....++..+.... ..
T Consensus 217 pdlKvILmSATid~e--~fs-~~F~~apvI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~------~~ 284 (1294)
T PRK11131 217 PDLKVIITSATIDPE--RFS-RHFNNAPIIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG------RE 284 (1294)
T ss_pred CCceEEEeeCCCCHH--HHH-HHcCCCCEEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHh------cC
Confidence 467999999999753 344 444433234433211 2233333322211 12222222222111 12
Q ss_pred CCCeEEEEecccchHHHHHHHHHHcCCc---eeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEc
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAEGLH---AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
+.+.+||||++..+++.+++.|...+++ +..+||++++++|..+++. .|..+|||||+++++|||||+|++||++
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~ 362 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDP 362 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEEC
Confidence 3456999999999999999999988765 6789999999999999886 4788999999999999999999999998
Q ss_pred CC---------------C---CCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 450 DL---------------P---KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 450 ~~---------------~---~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
+. | .|...|.||+||+||. .+|.|+.+|++.+...
T Consensus 363 Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 363 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred CCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 62 3 3457899999999999 6899999999877544
No 86
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=1.6e-31 Score=296.49 Aligned_cols=316 Identities=19% Similarity=0.239 Sum_probs=206.1
Q ss_pred CCCCHHHHHHHHhHh----CC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVAL----SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~----~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
..|+++|.+|+..+. +| +++|++++||||||+++ +.++..++... ..+++|||||+.+|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 468999999998775 33 57999999999999986 55555555432 356899999999999999999998
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-----CCCCCCceEEEecchhHhhcC-------
Q 008430 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDM------- 284 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-----~~~~~~~~~iIiDE~H~~~~~------- 284 (565)
+.... ......+++....... .......|+|+|+++|...+... .+.+..+++|||||||+....
T Consensus 486 ~~~~~-~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEG-DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccc-ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 63211 1111111111111111 12345789999999997765432 245778999999999996310
Q ss_pred --------CCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeE---------------------EEeCCcC-
Q 008430 285 --------GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQ---------------------VKVGKVS- 334 (565)
Q Consensus 285 --------~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~---------------------~~~~~~~- 334 (565)
++...|+.++.++. ...|||||||..... .+++.|+. +......
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 12467889999884 358999999965432 22333221 1110000
Q ss_pred -CC--CCc-eE-------EE-EEEeccc---------------hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchH
Q 008430 335 -SP--TAN-VI-------QI-LEKVSEN---------------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (565)
Q Consensus 335 -~~--~~~-~~-------~~-~~~~~~~---------------~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a 387 (565)
.. ... +. .. ....... .....++..+.+.. .. ...+++||||.++.||
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l----~~-~~~~KtiIF~~s~~HA 711 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL----DP-TGEGKTLIFAATDAHA 711 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH----hc-cCCCcEEEEEcCHHHH
Confidence 00 000 00 00 0000000 00011111122111 11 1236899999999999
Q ss_pred HHHHHHHHHc------CC---ceeEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCcccCCCCccCccEEEEcCCCCCccc
Q 008430 388 DEVSEALVAE------GL---HAVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMGVAHVVNLDLPKTVED 457 (565)
Q Consensus 388 ~~l~~~l~~~------~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~ 457 (565)
+.+.+.|.+. ++ .+..+||+++ ++..++++|++++. .|+|+++++.+|+|+|.|.+||+++++.|...
T Consensus 712 ~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~l 789 (1123)
T PRK11448 712 DMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRIL 789 (1123)
T ss_pred HHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHH
Confidence 9999887653 22 4566888875 57889999999887 69999999999999999999999999999999
Q ss_pred ceecccccccCCC--ceeEEEEec
Q 008430 458 YVHRIGRTGRGGS--MGQATSFYT 479 (565)
Q Consensus 458 ~~Q~~GR~~R~g~--~g~~~~~~~ 479 (565)
|+||+||+.|... .+...++++
T Consensus 790 f~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 790 YEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999644 244444444
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=270.41 Aligned_cols=312 Identities=22% Similarity=0.253 Sum_probs=231.6
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|-.+|++|+-.+..|..++|.|+|.+|||+++..++...-. ++.|++|..|-++|-+|-++.|+..+++
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~D-- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGD-- 366 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhccc--
Confidence 788999999999999999999999999999998766544322 4788999999999999999999998864
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCc
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
+++++|+. +++..+.++|+|.+.|-.++.++.--..++.+||+||+|.+.+...+..|+.++-.+|...+
T Consensus 367 ---vgLlTGDv-------qinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 367 ---VGLLTGDV-------QINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred ---cceeecce-------eeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 34888886 66778999999999999999998877889999999999999988888899999999999999
Q ss_pred EEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec----------------------------------
Q 008430 303 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------------------------------- 348 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 348 (565)
+|++|||.|+..+..-.-.-.....+.+......+..+.+.+..-.
T Consensus 437 ~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 437 FILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 9999999987765322111111111111111000001111100000
Q ss_pred -----------------------------cchHH--HHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc
Q 008430 349 -----------------------------ENEKV--DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE 397 (565)
Q Consensus 349 -----------------------------~~~k~--~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~ 397 (565)
...+. ...++.+... .+...-|+++||-+++.|++.++.|...
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L------~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL------RKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHH------hhcccCceEEEEEccccHHHHHHHHhcc
Confidence 00000 0111111111 1122346999999999999999998552
Q ss_pred C---------------------------------------CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCC
Q 008430 398 G---------------------------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 398 ~---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
. -.++++||++-+--++-+.-.|..|-++||+||..+++||
T Consensus 591 nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGV 670 (1248)
T KOG0947|consen 591 NLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGV 670 (1248)
T ss_pred CcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhc
Confidence 1 1367899999999999999999999999999999999999
Q ss_pred CccCccEEEEcCC---------CCCcccceecccccccCCC--ceeEEEEeccc
Q 008430 439 DVMGVAHVVNLDL---------PKTVEDYVHRIGRTGRGGS--MGQATSFYTDR 481 (565)
Q Consensus 439 dip~v~~Vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 481 (565)
|+|.-.+|+. .. -..+..|.||+|||||.|- .|.+++++...
T Consensus 671 NMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 671 NMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9997666653 11 1368999999999999985 58888877654
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.2e-29 Score=263.75 Aligned_cols=319 Identities=20% Similarity=0.249 Sum_probs=231.9
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
-.|+++|.-+--.+..|+ |..++||+|||++|++|++..++. |..++||+|+++||.|.++.+..++..+
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 367888888777777765 899999999999999999977654 4569999999999999999999999876
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC-CCCC-----CCceEEEecchhHhh-cCC--------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTSL-----SRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~-~~~~-----~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++++|+.........+ .++|+++||+.| ++++..+ .+.+ ..+.++||||+|.++ |+.
T Consensus 151 -GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 151 -GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred -CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 69999999998877665444 589999999999 8888876 3334 579999999999765 211
Q ss_pred -------CHHHHHHHHHhCCC--------------CCcEEEEE-------------------------------------
Q 008430 286 -------FEPQIREVMQNLPD--------------KHQTLLFS------------------------------------- 307 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~--------------~~~~l~~S------------------------------------- 307 (565)
....+..+...+.. +.+.+.+|
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 11112222222211 11122222
Q ss_pred -------------------------------------------------------------------------------e
Q 008430 308 -------------------------------------------------------------------------------A 308 (565)
Q Consensus 308 -------------------------------------------------------------------------------A 308 (565)
+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 2
Q ss_pred ecChHHHHHHHHHcCCCeEEEeCCcCCCC-CceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchH
Q 008430 309 TMPVEIEALAQEYLTDPVQVKVGKVSSPT-ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (565)
Q Consensus 309 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a 387 (565)
|...+-.++..-|-...+ .+. ...+. ........+.....|...+++.+.+.... +.|+||||++++.+
T Consensus 388 Ta~te~~Ef~~iY~l~Vv--~IP-tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~-------g~PVLVgt~Sie~s 457 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVV--VIP-TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVR-------KQPVLVGTVSIEAS 457 (896)
T ss_pred CChhHHHHHHHHhCCCEE--ECC-CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhC-------CCCEEEEeCcHHHH
Confidence 221111111111111000 000 00000 00112234455667888888777655432 34699999999999
Q ss_pred HHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccC-------------------------
Q 008430 388 DEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG------------------------- 442 (565)
Q Consensus 388 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~------------------------- 442 (565)
+.+++.|.+.|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~ 535 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKK 535 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999995 9999999999999851
Q ss_pred -------------ccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 443 -------------VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 443 -------------v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
-=+||-...+.|...-.|-.||+||.|.+|.+-.|++-+|...
T Consensus 536 ~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 536 EWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred HhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 1267888888899999999999999999999999999887554
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=7.1e-30 Score=281.81 Aligned_cols=307 Identities=20% Similarity=0.256 Sum_probs=212.2
Q ss_pred HHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEE
Q 008430 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 228 (565)
Q Consensus 149 ~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 228 (565)
.+.+..+..++.++|+|+||||||.. +|.+..... .+...++++.-|++--+..++..+.+.++...+..++.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 45666666667789999999999985 665543221 11233567778999888888888887765322333333
Q ss_pred EECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh-HhhcCCCHHH-HHHHHHhCCCCCcEEEE
Q 008430 229 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLLF 306 (565)
Q Consensus 229 ~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~i~~~~~~~~~~l~~ 306 (565)
-+.... ....+..|+|+|++.|.+.+.... .+..+++|||||+| ++++.++.-. +..++.. .++.|+|+|
T Consensus 146 ~vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlm 217 (1283)
T TIGR01967 146 KVRFHD------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIIT 217 (1283)
T ss_pred EEcCCc------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEE
Confidence 222221 223467899999999998887654 47889999999999 5877776654 4555443 457889999
Q ss_pred EeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEecc------chHHHHHHHHHHHHHHhhhhcCCCCCeEEEE
Q 008430 307 SATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (565)
Q Consensus 307 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF 380 (565)
|||++.. . +..++.+...+.+.... ..+...+..... ......+...+..... ...+.+|||
T Consensus 218 SATld~~--~-fa~~F~~apvI~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~------~~~GdILVF 285 (1283)
T TIGR01967 218 SATIDPE--R-FSRHFNNAPIIEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA------EGPGDILIF 285 (1283)
T ss_pred eCCcCHH--H-HHHHhcCCCEEEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHh------hCCCCEEEe
Confidence 9999743 3 34444433233332211 122222222211 1223333333332211 123469999
Q ss_pred ecccchHHHHHHHHHHcC---CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCC----
Q 008430 381 VERKTRCDEVSEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---- 453 (565)
Q Consensus 381 ~~s~~~a~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~---- 453 (565)
+++..+++.+++.|.+.+ +.+..+||++++++|..+++.+ +..+|||||+++++|||||+|++||+++.+.
T Consensus 286 Lpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~y 363 (1283)
T TIGR01967 286 LPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRY 363 (1283)
T ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccc
Confidence 999999999999999875 4588899999999999986654 3468999999999999999999999988532
Q ss_pred --------------CcccceecccccccCCCceeEEEEeccccHHH
Q 008430 454 --------------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 454 --------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
|...|.||.||+||.| +|.|+.++++.+...
T Consensus 364 d~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 364 SYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 5568999999999997 899999999876543
No 90
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.2e-30 Score=259.52 Aligned_cols=324 Identities=20% Similarity=0.236 Sum_probs=244.3
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|-|+|..|+..+-++..+||.|.|.+|||.++..++...+.. ..||+|..|-++|-+|-++++..-+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 6899999999999999999999999999999998887776654 567999999999999999999987753
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCc
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
+++++|+. -++.++..+|+|.+.|-.++.++.--+..+.+||+||+|.|-+...+-.|+..+-.++++.+
T Consensus 199 ---VGLMTGDV-------TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDV-------TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeecce-------eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 67788875 45667889999999999999999888899999999999999988888888888888999999
Q ss_pred EEEEEeecChHHH--HHHHHHcCCCeEEEeCCcCCCCCceEE--------EEEEeccc-----hHHHHHHHHHHHHHHhh
Q 008430 303 TLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQ--------ILEKVSEN-----EKVDRLLALLVEEAFLA 367 (565)
Q Consensus 303 ~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-----~k~~~l~~~l~~~~~~~ 367 (565)
.+++|||+|+..+ +++...-..|.++.+......+ -... ++..++.. +.....+..+.......
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTP-LQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTP-LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCc-ceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 9999999997764 3444455667776654432211 1111 11111111 12222222222221111
Q ss_pred h---------h--------------------cCCCCCeEEEEecccchHHHHHHHHHHcC--------------------
Q 008430 368 E---------K--------------------SCHPFPLTIVFVERKTRCDEVSEALVAEG-------------------- 398 (565)
Q Consensus 368 ~---------~--------------------~~~~~~~~liF~~s~~~a~~l~~~l~~~~-------------------- 398 (565)
. + ......|+|||+-++++|+.+|-.+.+..
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 0 0 00123469999999999998887764421
Q ss_pred -------------------CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCC-------
Q 008430 399 -------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------- 452 (565)
Q Consensus 399 -------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------- 452 (565)
-.+..+|+|+-+--++-+.-.|.+|-+++|+||..++.|+|+|.-++|+ ...-
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~f 506 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKF 506 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCcce
Confidence 2367899999999999999999999999999999999999999655554 2221
Q ss_pred --CCcccceecccccccCCC--ceeEEEEeccc-cHHHHHH
Q 008430 453 --KTVEDYVHRIGRTGRGGS--MGQATSFYTDR-DMLLVAQ 488 (565)
Q Consensus 453 --~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-~~~~~~~ 488 (565)
-|...|+||.|||||.|. .|.|++++++. +....+.
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 277899999999999985 58999988875 4444443
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5e-30 Score=269.27 Aligned_cols=343 Identities=18% Similarity=0.248 Sum_probs=241.6
Q ss_pred HCCCCCCCHHHHHHHHhHhCCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCC---CCCCeEEEEccchhhHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR---GDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~---~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
..|...++++|.......+.+. ++++|||||+|||.++++-+++.+-....... -...+++|++|..+|+..|...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 3466679999999999998775 79999999999999999999998776532111 1245799999999999999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCC---CCCceEEEecchhHhhcCCCHHHH
Q 008430 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS---LSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~---~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
|.+.+..+ +++|.-++|+....... -.+..|+||||+.+. .+.++... .+-++++||||.|.+- .+.++.+
T Consensus 384 fSkRla~~-GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLLh-DdRGpvL 457 (1674)
T KOG0951|consen 384 FSKRLAPL-GITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLLH-DDRGPVL 457 (1674)
T ss_pred HHhhcccc-CcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhcc-cccchHH
Confidence 99999887 79999999987654332 245889999999994 33333222 2347899999999653 3456666
Q ss_pred HHHHHhC-------CCCCcEEEEEeecChHHHHHHHHHcCC-CeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008430 291 REVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 291 ~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 362 (565)
..|.... ...++++|+|||+|+.. ....|+.. +..+......-.+-.+.+.+..+........ .+.+.+
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~-~qamNe 534 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKR-FQAMNE 534 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccCcCCccceEeccccCCchHH-HHHHHH
Confidence 6554433 24678999999998753 23333332 2222222222223344555555544333322 222222
Q ss_pred HHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH-------------------------------------cCCceeEec
Q 008430 363 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-------------------------------------EGLHAVALH 405 (565)
Q Consensus 363 ~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~-------------------------------------~~~~~~~~~ 405 (565)
..+...-......++|||+.++++..+.|+.++. ..+.++.+|
T Consensus 535 ~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHh 614 (1674)
T KOG0951|consen 535 ACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHH 614 (1674)
T ss_pred HHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeec
Confidence 2222221122225699999999998777777652 124578899
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEE----EcCCC------CCcccceecccccccCC--Ccee
Q 008430 406 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLDLP------KTVEDYVHRIGRTGRGG--SMGQ 473 (565)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----~~~~~------~s~~~~~Q~~GR~~R~g--~~g~ 473 (565)
+||+..+|..+.+.|++|+++|||+|..+++|+|+|.-+++| .|++- .++.+.+||+|||||-+ ..|.
T Consensus 615 AGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ge 694 (1674)
T KOG0951|consen 615 AGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGE 694 (1674)
T ss_pred cCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCc
Confidence 999999999999999999999999999999999999766555 25543 37888999999999965 4577
Q ss_pred EEEEeccccHHHHHHH
Q 008430 474 ATSFYTDRDMLLVAQI 489 (565)
Q Consensus 474 ~~~~~~~~~~~~~~~l 489 (565)
+++.....+..+...+
T Consensus 695 giiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 695 GIIITDHSELQYYLSL 710 (1674)
T ss_pred eeeccCchHhhhhHHh
Confidence 8877777666655543
No 92
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.9e-29 Score=234.13 Aligned_cols=202 Identities=51% Similarity=0.851 Sum_probs=180.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 123 f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
|+++++++.+.+.+...|+..|+++|.++++.+.+|+++++++|||+|||++|+++++..+.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999998877642 124788999999
Q ss_pred chhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+++|+.|+.+.++.+.... ++.+..+.|+.........+..+++|+|+||+.|.+.+......+.+++++|+||+|++.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 78 TRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 9999999999999987653 678888999988877766676789999999999999998888888899999999999999
Q ss_pred cCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEE
Q 008430 283 DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 328 (565)
Q Consensus 283 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 328 (565)
+.++...+..++..++...|++++|||++......+..++.+++.+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8888999999999998889999999999999998898998887654
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.2e-28 Score=263.27 Aligned_cols=319 Identities=22% Similarity=0.283 Sum_probs=242.6
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHhHhC----CC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 130 PSIMKDIE-FHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 130 ~~i~~~l~-~~~~~~~~~~Q~~~l~~l~~----g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
.+..+.+. .++| .-|+-|..||..+.+ ++ |=||||.-|.|||.+++-+++..+. +|++|.|+||
T Consensus 581 ~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLVP 651 (1139)
T COG1197 581 TEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLVP 651 (1139)
T ss_pred hHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEcc
Confidence 33444443 2343 569999999999873 44 6799999999999999776666554 4899999999
Q ss_pred chhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecch
Q 008430 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 278 (565)
|--|++|.+++|+..+.++ .+++..+.--...+++...+ .+..|||||| +.+....+.+.+++++||||.
T Consensus 652 TTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEE 725 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEech
Confidence 9999999999999999987 58998888877777665544 4679999999 555566788999999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
|+++ -.-+.-++.++.+.-+|-|||||-+..-...-..+++--.+ ..++.+...+..++...+. ..+.+
T Consensus 726 qRFG-----Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI-----~TPP~~R~pV~T~V~~~d~-~~ire 794 (1139)
T COG1197 726 QRFG-----VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVI-----ATPPEDRLPVKTFVSEYDD-LLIRE 794 (1139)
T ss_pred hhcC-----ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhc-----cCCCCCCcceEEEEecCCh-HHHHH
Confidence 9965 33355556666777899999999666544443344332222 2333333333333332222 22233
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccC
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
.+...... ++++-..+|.++..+.+++.|++. ..++.+.||.|+..+-++++..|.+|+.+|||||.+++.
T Consensus 795 AI~REl~R-------gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEt 867 (1139)
T COG1197 795 AILRELLR-------GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIET 867 (1139)
T ss_pred HHHHHHhc-------CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeec
Confidence 33333322 345888889999999999999987 557889999999999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCC-CCcccceecccccccCCCceeEEEEeccc
Q 008430 437 GLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|||||++|++|.-+.. ....+..|..||+||..+.+.|+.++.+.
T Consensus 868 GIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 868 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999876654 36788899999999999999999999864
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.1e-28 Score=258.39 Aligned_cols=319 Identities=21% Similarity=0.267 Sum_probs=237.6
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.-+.-.+..|+ |..+.||+|||+++.+|++...+. |..+-|++|+..||.|.++.+..++..+
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 478999998888887775 899999999999999999754443 4458899999999999999999999876
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCCCceEEEecchhHhh-cCC--------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++++|+....+....+ .++|+++|+..| ++++..+. ..+..+.++||||||.++ +..
T Consensus 150 -Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 79999999998888776654 499999999999 88887654 236679999999999764 110
Q ss_pred -------CHHHHHHHHHhCCCC----------------------------------------------------------
Q 008430 286 -------FEPQIREVMQNLPDK---------------------------------------------------------- 300 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~~---------------------------------------------------------- 300 (565)
....+..+...+...
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 111122222222110
Q ss_pred -----------------------------------------------------------CcEEEEEeecChHHHHHHHHH
Q 008430 301 -----------------------------------------------------------HQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 301 -----------------------------------------------------------~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++.|||+|...+..++...|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 034445555544433333333
Q ss_pred cCCCeEEEeCCcCCCCCc-eEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCc
Q 008430 322 LTDPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 400 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~ 400 (565)
-.+.+.+.. ..+... ......+.....|...+...+.+.... +.|+||||+++..++.+++.|.+.|++
T Consensus 387 ~l~vv~IPt---nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~-------grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 387 NLDVVVIPT---NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKK-------GQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred CCCEEEcCC---CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 222111111 111110 111233445667888887777654322 336999999999999999999999999
Q ss_pred eeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCc-------------------------------------
Q 008430 401 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------- 443 (565)
Q Consensus 401 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v------------------------------------- 443 (565)
+..+|+. +.+|+..+..|+.+...|+|||++++||+||+=-
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 7899999999999999999999999999999742
Q ss_pred -cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 444 -AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 444 -~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
=+||....+.|...-.|-.||+||.|.+|.+-.|++-+|...
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 278888889999999999999999999999999999887544
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.9e-28 Score=225.69 Aligned_cols=307 Identities=19% Similarity=0.194 Sum_probs=219.5
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|++.|+.+-..+. +.++.||.|.||+|||.+. ++.++..+++ |.++.+..|+...+.+++.++++.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78999998877665 4568999999999999975 8888888874 8899999999999999999999987
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
. +..+.+++|+.... ....++|+|...|++.-. .||++||||+|.+.-..-......+-...+
T Consensus 169 ~---~~~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 S---NCDIDLLYGDSDSY-------FRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred c---cCCeeeEecCCchh-------ccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 5 46788899886532 126899999988876544 599999999997653322333444555555
Q ss_pred CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHH-------HHHHHHHHHHHhhhhcC
Q 008430 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD-------RLLALLVEEAFLAEKSC 371 (565)
Q Consensus 299 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-------~l~~~l~~~~~~~~~~~ 371 (565)
...-+|.+||||+..++..+...-.....+.... ...+-....+.......|.- .+...+.+..
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~~~klp~Rf--H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~------- 302 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLRILKLPARF--HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR------- 302 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCeeEeecchhh--cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-------
Confidence 5666999999999887766544322222221111 11111122233333222211 2333333322
Q ss_pred CCCCeEEEEecccchHHHHHHHHHHc-C-CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEc
Q 008430 372 HPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 372 ~~~~~~liF~~s~~~a~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
..+.+++||+++++..+.+++.|++. + ..+..+|+.. ..|.+.+++|++|++++||+|.++++|+.+|+|+++|.-
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg 380 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG 380 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec
Confidence 23346999999999999999999554 3 3457788764 479999999999999999999999999999999987764
Q ss_pred CCC--CCcccceecccccccCC--CceeEEEEeccccHHH
Q 008430 450 DLP--KTVEDYVHRIGRTGRGG--SMGQATSFYTDRDMLL 485 (565)
Q Consensus 450 ~~~--~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~ 485 (565)
.-- .+-...+|.+||+||.- ..|.++.|........
T Consensus 381 aeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 381 AEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred CCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 332 46677899999999954 4688877766554433
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.4e-29 Score=268.44 Aligned_cols=323 Identities=21% Similarity=0.269 Sum_probs=237.0
Q ss_pred CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.+| .|.++|++++..|..|.+++++||||+|||+++.+++...+.. +.+++|..|.++|.+|.+..|...+
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHh
Confidence 344 7899999999999999999999999999999997776665543 6679999999999999999999988
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
++. .-.+++++|+. .++.++.++|+|.+.|-+++..+...+.++..||+||+|.+.+...+..++.++-+++
T Consensus 187 gdv-~~~vGL~TGDv-------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 187 GDV-ADMVGLMTGDV-------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhh-hhhccceecce-------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 643 33468888886 5678899999999999999999988899999999999999999989999999999999
Q ss_pred CCCcEEEEEeecChHHH--HHHHHHcCCCeEEEeCCcCCCCCceEEE------EEEeccchH-----HHHHHHHHHHH--
Q 008430 299 DKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQI------LEKVSENEK-----VDRLLALLVEE-- 363 (565)
Q Consensus 299 ~~~~~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~k-----~~~l~~~l~~~-- 363 (565)
...+++++|||.++..+ .++...-..+..+...... +.+-...+ +..++...+ .......+...
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~R-pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR-PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCC-CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 99999999999986643 3333333444444333221 11111111 111111111 00011111100
Q ss_pred -HHh------------------------------hhhcCCCCCeEEEEecccchHHHHHHHHHH----------------
Q 008430 364 -AFL------------------------------AEKSCHPFPLTIVFVERKTRCDEVSEALVA---------------- 396 (565)
Q Consensus 364 -~~~------------------------------~~~~~~~~~~~liF~~s~~~a~~l~~~l~~---------------- 396 (565)
... ........-++|+||-++..|+..+..+..
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 000 000012234699999999999887777641
Q ss_pred ------------cCC-------------ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE---
Q 008430 397 ------------EGL-------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--- 448 (565)
Q Consensus 397 ------------~~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~--- 448 (565)
.++ ...++|+++-+..+..+...|..|-++|+++|.+++.|+|+|.-++|+-
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 112 1447899999999999999999999999999999999999996555541
Q ss_pred -cC----CCCCcccceecccccccCCCc--eeEEEEec
Q 008430 449 -LD----LPKTVEDYVHRIGRTGRGGSM--GQATSFYT 479 (565)
Q Consensus 449 -~~----~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~ 479 (565)
+| ..-++..|+|+.|||||.|.+ |.++++-.
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 22 123789999999999999975 77777733
No 97
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=7.7e-29 Score=269.93 Aligned_cols=315 Identities=16% Similarity=0.204 Sum_probs=214.7
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|++||.+++.++. +|.++|++..+|.|||+.+ +.++..+.... +....+|||||. .++.||.++|.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999886 5678999999999999986 55555554421 123458999995 78899999999997
Q ss_pred hcCCCceEEEEECCCCHHHHHH---HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHH
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
. .+.+..+.|......... .....++|+|+|++++...... +.--.+++|||||||++.+. .....+.+.
T Consensus 243 p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 243 P---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred C---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 4 466777777654322211 1234689999999998654322 22335899999999998764 334455566
Q ss_pred hCCCCCcEEEEEeecChH-HHHH---HH--------------HHcC------------------CCeEEEeC----CcCC
Q 008430 296 NLPDKHQTLLFSATMPVE-IEAL---AQ--------------EYLT------------------DPVQVKVG----KVSS 335 (565)
Q Consensus 296 ~~~~~~~~l~~SAT~~~~-~~~~---~~--------------~~~~------------------~~~~~~~~----~~~~ 335 (565)
.+.... .+++||||-.+ +..+ +. .++. .|+.+.-. ....
T Consensus 316 ~L~a~~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFSTNY-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HhhcCc-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 665444 68899999211 1100 00 0000 00000000 0000
Q ss_pred CCCceEEEEE-------------------------------------------------------------EeccchHHH
Q 008430 336 PTANVIQILE-------------------------------------------------------------KVSENEKVD 354 (565)
Q Consensus 336 ~~~~~~~~~~-------------------------------------------------------------~~~~~~k~~ 354 (565)
+......+.. .+....|..
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 0000000000 001112322
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC---CceEEEEc
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG---STNILVAT 431 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T 431 (565)
.+..++.... ..+.++||||......+.|.+.|...|+.+..+||+++..+|..+++.|... ...+|++|
T Consensus 475 lLdkLL~~Lk-------~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 475 LLDKLLPKLK-------ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHHHHHHH-------hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 2222232221 2345799999999999999999999999999999999999999999999763 34678999
Q ss_pred CcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEe
Q 008430 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 478 (565)
.+++.|||+..+++||+||++|++....|++||++|.|+...|.++.
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999987765544
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.6e-28 Score=255.60 Aligned_cols=319 Identities=20% Similarity=0.269 Sum_probs=231.3
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-+.-.+..|+ |..+.||+|||+++.+|++...+. |..+-+++|+.-||.|-++.+..++..+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 478999998888887776 999999999999999999887765 7779999999999999999999999987
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhh-cCC--------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.++++.++....+..... .+||+++|...| ++++..+ ......+.+.||||+|.++ +..
T Consensus 149 -Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred -CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 79999999887776655444 589999999988 4444432 1123568899999999653 110
Q ss_pred -------CHHHHHHHHHhCCCC-------------------C--------------------------------------
Q 008430 286 -------FEPQIREVMQNLPDK-------------------H-------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~~-------------------~-------------------------------------- 301 (565)
....+..+...+... .
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 111111111111100 0
Q ss_pred -----------------------------------------------------------------------cEEEEEeec
Q 008430 302 -----------------------------------------------------------------------QTLLFSATM 310 (565)
Q Consensus 302 -----------------------------------------------------------------------~~l~~SAT~ 310 (565)
++.|||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 233344444
Q ss_pred ChHHHHHHHHHcCCCeEEEeCCcCCCC-CceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHH
Q 008430 311 PVEIEALAQEYLTDPVQVKVGKVSSPT-ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE 389 (565)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~ 389 (565)
..+-.++...|-.+.+ .+.. ..+. ........+.+...|...+.+.+..... .+.|+||||+++..++.
T Consensus 386 ~~e~~Ef~~iY~l~vv--~IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~-------~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 386 KTEEEEFREIYNMEVI--TIPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHA-------KGQPVLVGTVAIESSER 455 (796)
T ss_pred HHHHHHHHHHhCCCEE--EcCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-------CCCCEEEEeCcHHHHHH
Confidence 3322222222211111 1111 0000 0001112334556677777777765442 23369999999999999
Q ss_pred HHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCcc---Ccc-----EEEEcCCCCCcccceec
Q 008430 390 VSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLPKTVEDYVHR 461 (565)
Q Consensus 390 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip---~v~-----~Vi~~~~~~s~~~~~Q~ 461 (565)
+++.|.+.|+++..+|+++...++..+...++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|+
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999999888888888777777 999999999999994 899 99999999999999999
Q ss_pred ccccccCCCceeEEEEeccccHHH
Q 008430 462 IGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 462 ~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
.||+||.|.+|.+..+++.+|...
T Consensus 534 ~GRtGRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 534 RGRSGRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred hhhhccCCCCcceEEEEeccchHH
Confidence 999999999999999999887544
No 99
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.9e-28 Score=263.08 Aligned_cols=313 Identities=21% Similarity=0.214 Sum_probs=200.1
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..+|+|+|+.+........-++|.+|||+|||.+++.. +..+... +...+++|..||+++++|+++++++++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~-A~~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAY-AWRLIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHH-HHHHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 35899999988655444556899999999999998554 4444432 12467999999999999999999876543
Q ss_pred C-CCceEEEEECCCCHHH------------------------HHHHHhC---CCcEEEEccHHHHHHHHcC-CCCCCCc-
Q 008430 221 L-DSFKTAIVVGGTNIAE------------------------QRSELRG---GVSIVVATPGRFLDHLQQG-NTSLSRV- 270 (565)
Q Consensus 221 ~-~~~~~~~~~g~~~~~~------------------------~~~~~~~---~~~ilv~T~~~l~~~l~~~-~~~~~~~- 270 (565)
. ....+.+..|...... +.....+ -.+|+|||+..++...... ...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 2235666665443211 1110001 1689999998886443332 2222333
Q ss_pred ---eEEEecchhHhhcCCCHHHHHHHHHhC-CCCCcEEEEEeecChHHHHHHHHHcCCC----------eEEEeC-----
Q 008430 271 ---SFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDP----------VQVKVG----- 331 (565)
Q Consensus 271 ---~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~----------~~~~~~----- 331 (565)
++|||||+|.+ +......+..++..+ .....+|+||||+|......+...+... ......
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 48999999965 222233344444433 2245699999999988765544322211 000000
Q ss_pred Cc--CCC----CCceEEEEEEe--ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC---Cc
Q 008430 332 KV--SSP----TANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---LH 400 (565)
Q Consensus 332 ~~--~~~----~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~---~~ 400 (565)
.. ... .......+... ........+++.+.+... .++++|||||+++.|+.+++.|.+.+ ..
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-------~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-------AGAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-------cCCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 00 000 00000011111 111112334444433221 23469999999999999999999865 67
Q ss_pred eeEecCCCCHHHH----HHHHHHh-hcCC---ceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCC
Q 008430 401 AVALHGGRNQSDR----ESALRDF-RNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS 470 (565)
Q Consensus 401 ~~~~~~~~~~~~r----~~~~~~f-~~g~---~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~ 470 (565)
+..+||.++..+| +++++.| ++|+ ..|||+|++++.|+|| +++++|....| ...++||+||++|.+.
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999999 4567788 6665 4799999999999999 58999987777 6789999999999875
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.4e-27 Score=247.91 Aligned_cols=148 Identities=20% Similarity=0.329 Sum_probs=128.0
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q 008430 124 TDMCLHPSIMKDIE-----FHEYTRP---TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 124 ~~~~l~~~i~~~l~-----~~~~~~~---~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 195 (565)
+.+++.+++.+.+. ..|+..| +|+|.++++.+..++++++.++||+|||++|++|++..++. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 35578888887776 5788888 99999999999999999999999999999999999987764 23
Q ss_pred eEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCCCCCC------
Q 008430 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTSLS------ 268 (565)
Q Consensus 196 ~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~~~~~------ 268 (565)
.++||+|+++||.|..+.+..+.... ++++++++||.....+...+ .++|+||||++| ++++..+.+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 48999999999999999999998876 68999999999988776554 599999999999 999988755554
Q ss_pred -CceEEEecchhHhh
Q 008430 269 -RVSFVILDEADRML 282 (565)
Q Consensus 269 -~~~~iIiDE~H~~~ 282 (565)
.+.++||||||.++
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 56899999999865
No 101
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.96 E-value=2.9e-28 Score=249.81 Aligned_cols=316 Identities=18% Similarity=0.183 Sum_probs=216.2
Q ss_pred CCCCHHHHHHHHhHh----CCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~----~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
..++.+|..|+..+. +|+ .+|++++||+|||.++ +.++..+++.. .-+++|||+-+..|+.|.+..|..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-----hhheeeEEechHHHHHHHHHHHHH
Confidence 468999999998775 444 5999999999999997 88888887753 467899999999999999999999
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-----CCCCCCceEEEecchhHhhcCCCHHHHH
Q 008430 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDMGFEPQIR 291 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-----~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 291 (565)
+..... .+..+.+. .....++|.++|++++....... .+....||+|||||||+.. ...+.
T Consensus 238 ~~P~~~--~~n~i~~~--------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~ 303 (875)
T COG4096 238 FLPFGT--KMNKIEDK--------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWS 303 (875)
T ss_pred hCCCcc--ceeeeecc--------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhH
Confidence 886532 22222222 11235899999999998777654 4667789999999999966 66678
Q ss_pred HHHHhCCCCCcEEEEEeecChHHHHHHHHHc-CCCeEEE--------------------eC--CcCCCCCce--------
Q 008430 292 EVMQNLPDKHQTLLFSATMPVEIEALAQEYL-TDPVQVK--------------------VG--KVSSPTANV-------- 340 (565)
Q Consensus 292 ~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~~~~~~--------------------~~--~~~~~~~~~-------- 340 (565)
.|+.+|..- .+++||||..........++ +.|.... .. ..+......
T Consensus 304 ~I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 304 SILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 999999643 45669999765544444444 3332210 00 000000000
Q ss_pred ------EEEEEEe------ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-----CCceeE
Q 008430 341 ------IQILEKV------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-----GLHAVA 403 (565)
Q Consensus 341 ------~~~~~~~------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-----~~~~~~ 403 (565)
.+.+... .-......+...+..+...+ ......+|+||||.+..||+.+...|.+. +--+..
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~-~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~ 460 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRG-ATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMK 460 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccc-cCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEE
Confidence 0000000 01112233344444433332 12233678999999999999999999875 334667
Q ss_pred ecCCCCHHHHHHHHHHhhcC--CceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCC-------CceeE
Q 008430 404 LHGGRNQSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG-------SMGQA 474 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g-------~~g~~ 474 (565)
++|+.. +-...++.|... --+|.++++++..|||+|.|-.+|++..-.|...|.||+||+-|.- ++...
T Consensus 461 IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~ 538 (875)
T COG4096 461 ITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEF 538 (875)
T ss_pred Eeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCcccccee
Confidence 777654 334455666543 3579999999999999999999999999999999999999999932 23556
Q ss_pred EEEecccc
Q 008430 475 TSFYTDRD 482 (565)
Q Consensus 475 ~~~~~~~~ 482 (565)
+++++-.+
T Consensus 539 F~ifDf~~ 546 (875)
T COG4096 539 FTIFDFVD 546 (875)
T ss_pred EEEEEhhh
Confidence 66665443
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.1e-26 Score=244.62 Aligned_cols=318 Identities=21% Similarity=0.250 Sum_probs=230.3
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+++|.-+--.+..|+ |..++||.|||+++++|++...+. |..|.||+|+..||.|..+++..++..+
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~l- 150 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFL- 150 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 67888887776776665 899999999999999999877664 5559999999999999999999999886
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC-CCCC-----CCceEEEecchhHhhcCC----------
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTSL-----SRVSFVILDEADRMLDMG---------- 285 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~-~~~~-----~~~~~iIiDE~H~~~~~~---------- 285 (565)
+++++++.++.+..+.. ....++|+++|++.| ++++..+ .... ..+.++||||+|.++-..
T Consensus 151 Glsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 79999999988764432 234699999999999 8888776 3333 678999999999765211
Q ss_pred ------CHHHHHHHHHhCC-------------------CCC---------------------------------------
Q 008430 286 ------FEPQIREVMQNLP-------------------DKH--------------------------------------- 301 (565)
Q Consensus 286 ------~~~~~~~i~~~~~-------------------~~~--------------------------------------- 301 (565)
....+..+...+. ...
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 1111111111110 001
Q ss_pred -----------------------------------------------------------------------------cEE
Q 008430 302 -----------------------------------------------------------------------------QTL 304 (565)
Q Consensus 302 -----------------------------------------------------------------------------~~l 304 (565)
++.
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 122
Q ss_pred EEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCC-ceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecc
Q 008430 305 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 305 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s 383 (565)
|||+|...+-.++...|-.+.+.+ . ...+.. .-.....+....+|...+++.+...... +.|+||||.+
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~I--P-Tnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~-------GrpVLV~t~s 458 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLDTVVV--P-TNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRER-------GQPVLVGTVS 458 (908)
T ss_pred cccCCChHHHHHHHHHhCCCEEEC--C-CCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHc-------CCCEEEEeCc
Confidence 233333222222222221111111 0 000000 0111123445677888888877665543 3369999999
Q ss_pred cchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccC---------------------
Q 008430 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--------------------- 442 (565)
Q Consensus 384 ~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~--------------------- 442 (565)
+..++.+++.|...|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999851
Q ss_pred ----------------ccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 443 ----------------VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 443 ----------------v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
-=+||-...+.|...-.|-.||+||.|.+|.+-.|++-+|...
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 1278888889999999999999999999999999999887644
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=4.3e-27 Score=243.57 Aligned_cols=336 Identities=20% Similarity=0.257 Sum_probs=236.8
Q ss_pred HHHHCCCCCCCHHHHHHH--HhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHH
Q 008430 135 DIEFHEYTRPTSIQAQAM--PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 135 ~l~~~~~~~~~~~Q~~~l--~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~ 212 (565)
....+|+..++.||.+|+ +.++.+++.|..+||+.|||+++.+-++..++.. ++.++++.|....+..-..
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceeehhHHHHh
Confidence 346779999999999998 5677889999999999999999999999888774 5569999999999998888
Q ss_pred HHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc--CCCCCCCceEEEecchhHhhcCCCHHHH
Q 008430 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~--~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
.+..+.... ++.+..++|....... ...-++.|||.++-..+... ..-.++.+++||+||.|.+.+.+.+..+
T Consensus 288 ~l~~~~~~~-G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 288 ALSPFSIDL-GFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred hhhhhcccc-CCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 888887765 6888877776544322 23467999999987555443 1234667999999999999998888777
Q ss_pred HHHHHhC-----CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCC---ceEEEEEEeccchHHHHHHHHHHH
Q 008430 291 REVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA---NVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 291 ~~i~~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~l~~~l~~ 362 (565)
+.++..+ ....|+||||||+++. ..+..++...+... .....+.. .+...+.... + ..++..+..
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t-~fRPv~L~E~ik~G~~i~~~~---r-~~~lr~ia~ 435 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTT-RFRPVPLKEYIKPGSLIYESS---R-NKVLREIAN 435 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheec-ccCcccchhccCCCcccccch---h-hHHHHHhhh
Confidence 7766543 3346799999999754 23333333211111 00000000 0001111111 1 111111111
Q ss_pred HHHhhh-------------hcCCCCCeEEEEecccchHHHHHHHHHHc--------------------------------
Q 008430 363 EAFLAE-------------KSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------- 397 (565)
Q Consensus 363 ~~~~~~-------------~~~~~~~~~liF~~s~~~a~~l~~~l~~~-------------------------------- 397 (565)
...... .....+.++||||+++..|+.++..+...
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 000000 01122345999999999998887665320
Q ss_pred ------CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEc----CCCCCcccceeccccccc
Q 008430 398 ------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL----DLPKTVEDYVHRIGRTGR 467 (565)
Q Consensus 398 ------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~----~~~~s~~~~~Q~~GR~~R 467 (565)
...+..+|++++.++|+.+...|++|.+.|++||+.++.|+++|..++++-. ....+...|.||+|||||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 2347889999999999999999999999999999999999999988877643 234577899999999999
Q ss_pred CCC--ceeEEEEeccccHHHHHHH
Q 008430 468 GGS--MGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 468 ~g~--~g~~~~~~~~~~~~~~~~l 489 (565)
.|- .|.+++++.+.+...+.++
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cccccCcceEEEeeccchhHHHHH
Confidence 975 5999999999887666654
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=2.7e-26 Score=231.30 Aligned_cols=316 Identities=16% Similarity=0.206 Sum_probs=223.3
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.+++||.+.++++. +|-++|+...+|.|||+.. +.++.++..... ..+..||++|...| .+|.++|++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~----~~GPfLVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG----IPGPFLVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC----CCCCeEEEeeHhhH-HHHHHHHHHhC
Confidence 68999999999986 5668999999999999986 777776665321 23348999997655 66999999998
Q ss_pred hcCCCceEEEEECCCCHHHHH--H-HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHH
Q 008430 219 RSLDSFKTAIVVGGTNIAEQR--S-ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
. ++.+.+++|+....... . ...+..+|+|+|+++..+.-. .+.--++.|+||||+|++.+. ...+.+++.
T Consensus 241 P---~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr 313 (971)
T KOG0385|consen 241 P---SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKILR 313 (971)
T ss_pred C---CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHHH
Confidence 4 67899999986433221 1 123479999999999865422 122235899999999999876 455678888
Q ss_pred hCCCCCcEEEEEeecC-hHHHHHHH-----------------HHc-----------------------------------
Q 008430 296 NLPDKHQTLLFSATMP-VEIEALAQ-----------------EYL----------------------------------- 322 (565)
Q Consensus 296 ~~~~~~~~l~~SAT~~-~~~~~~~~-----------------~~~----------------------------------- 322 (565)
.|.... -+++|+||- +++.++.. .++
T Consensus 314 ~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 887665 688899981 11111000 000
Q ss_pred -----------------------------------------------------CCCeEEEeCCcCCCCCceEEEEEEecc
Q 008430 323 -----------------------------------------------------TDPVQVKVGKVSSPTANVIQILEKVSE 349 (565)
Q Consensus 323 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (565)
..|.-+... ...++.. ..-..+..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~-ePg~pyt--tdehLv~n 469 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA-EPGPPYT--TDEHLVTN 469 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC-CCCCCCC--cchHHHhc
Confidence 000000000 0000000 00011112
Q ss_pred chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCC---ce
Q 008430 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS---TN 426 (565)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ 426 (565)
..|...|-++|.... ..++++|||.+-....+-|.+++.-+++....++|.++.++|...++.|.... .-
T Consensus 470 SGKm~vLDkLL~~Lk-------~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~Fi 542 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLK-------EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFI 542 (971)
T ss_pred CcceehHHHHHHHHH-------hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEE
Confidence 233333333333322 23457999999999999999999999999999999999999999999998754 45
Q ss_pred EEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEecccc
Q 008430 427 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 482 (565)
+|++|.+.+.|||+-.+++||.||..|+|..-+|...||+|.|+...|.+|-.-.+
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEecc
Confidence 78999999999999999999999999999999999999999999877766554433
No 105
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=3e-25 Score=199.80 Aligned_cols=164 Identities=31% Similarity=0.573 Sum_probs=140.2
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
||+|.++++.+.+|+++++.||||+|||++|+++++..+.+. ...++++++|+++|+.|..+.+.+++.. .+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSN-TNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccc-ccc
Confidence 689999999999999999999999999999999999887763 2348999999999999999999999876 367
Q ss_pred eEEEEECCCCHH-HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC--CCC
Q 008430 225 KTAIVVGGTNIA-EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKH 301 (565)
Q Consensus 225 ~~~~~~g~~~~~-~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~--~~~ 301 (565)
.+..++++.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+...++...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 888899988765 44445567799999999999999988655777799999999999998888888888888873 358
Q ss_pred cEEEEEeecChHHH
Q 008430 302 QTLLFSATMPVEIE 315 (565)
Q Consensus 302 ~~l~~SAT~~~~~~ 315 (565)
+++++|||++..++
T Consensus 154 ~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 154 QIILLSATLPSNVE 167 (169)
T ss_dssp EEEEEESSSTHHHH
T ss_pred cEEEEeeCCChhHh
Confidence 89999999985554
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.94 E-value=1.4e-24 Score=233.24 Aligned_cols=304 Identities=19% Similarity=0.181 Sum_probs=185.4
Q ss_pred CCCHHHHHHHHhHh----C------CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHH
Q 008430 143 RPTSIQAQAMPVAL----S------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~------g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~ 212 (565)
-++.+|.+|+..+. . .+..+++++||||||++++..+ ..+... ...+++|||||+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHH
Confidence 37889999998764 2 2469999999999999875443 444432 146789999999999999999
Q ss_pred HHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcC--CCCCCCc-eEEEecchhHhhcCCCHH
Q 008430 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQG--NTSLSRV-SFVILDEADRMLDMGFEP 288 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~--~~~~~~~-~~iIiDE~H~~~~~~~~~ 288 (565)
.|..+.... . .+..+.......+. ....|+|+|.++|...+... .+..... .+||+||||+... .
T Consensus 312 ~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~ 380 (667)
T TIGR00348 312 EFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----G 380 (667)
T ss_pred HHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----h
Confidence 999975321 0 11122222222332 34789999999998644321 2222222 3899999998752 2
Q ss_pred HHHHHH-HhCCCCCcEEEEEeecChHHHHHHHHHc----CCCeEEEeCCcCCCCCceE-EE-EEEe-----ccchH----
Q 008430 289 QIREVM-QNLPDKHQTLLFSATMPVEIEALAQEYL----TDPVQVKVGKVSSPTANVI-QI-LEKV-----SENEK---- 352 (565)
Q Consensus 289 ~~~~i~-~~~~~~~~~l~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~-~~~~-----~~~~k---- 352 (565)
.+...+ ..++ +...+||||||-..........+ +.++.. ............ .+ +... -...+
T Consensus 381 ~~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 381 ELAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 344444 4555 45699999999542111111111 122111 110000000000 00 0000 00000
Q ss_pred ------------------------------------HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH
Q 008430 353 ------------------------------------VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 353 ------------------------------------~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~ 396 (565)
...+...+.++..... .....+++|||.++.+|..+.+.|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~--~~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFK--ELFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhh--hcccCceeEEEecHHHHHHHHHHHHh
Confidence 1111111111111111 11246799999999999999998866
Q ss_pred c-----CCceeEecCCCCHH---------------------HHHHHHHHhhc-CCceEEEEcCcccCCCCccCccEEEEc
Q 008430 397 E-----GLHAVALHGGRNQS---------------------DRESALRDFRN-GSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 397 ~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
. +..++.+++..+.+ ....++++|++ +.++|||+++++..|+|.|.+++++..
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld 616 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD 616 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe
Confidence 5 24455666554332 23478889976 689999999999999999999999999
Q ss_pred CCCCCcccceecccccccC
Q 008430 450 DLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 450 ~~~~s~~~~~Q~~GR~~R~ 468 (565)
.+..+. .++|++||+.|.
T Consensus 617 Kplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 617 KPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred cccccc-HHHHHHHHhccc
Confidence 987765 579999999993
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=9.9e-24 Score=224.55 Aligned_cols=314 Identities=21% Similarity=0.282 Sum_probs=221.4
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
+....+.+..+.+..-++|+|+||+|||.. +|.+. ++.. ...+..+.+.-|+|--|..+++++.+.++...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~l--le~g---~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFL--LEEG---LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHH--Hhhh---cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 344455666777778899999999999986 44332 2221 1235678888899988888888888887664455
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH-hhcCCCH-HHHHHHHHhCCCCCc
Q 008430 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFE-PQIREVMQNLPDKHQ 302 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~-~~~~~~~-~~~~~i~~~~~~~~~ 302 (565)
.|++..-..+ ....+..|-++|.+.|.+.+..+.. ++.+++|||||+|. .++.++. ..+..++...+++.+
T Consensus 125 ~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 5665544432 2334578999999999999886544 88899999999994 3333322 234556677777789
Q ss_pred EEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEec-cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEe
Q 008430 303 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~ 381 (565)
+|.||||+..+ .+..++.+.-.+.+... ...+...+.... .+.. +...+......... ...+.+|||.
T Consensus 198 iIimSATld~~---rfs~~f~~apvi~i~GR---~fPVei~Y~~~~~~d~~---l~~ai~~~v~~~~~--~~~GdILvFL 266 (845)
T COG1643 198 LIIMSATLDAE---RFSAYFGNAPVIEIEGR---TYPVEIRYLPEAEADYI---LLDAIVAAVDIHLR--EGSGSILVFL 266 (845)
T ss_pred EEEEecccCHH---HHHHHcCCCCEEEecCC---ccceEEEecCCCCcchh---HHHHHHHHHHHhcc--CCCCCEEEEC
Confidence 99999999754 56667775444433321 122222231221 2221 22222222211111 2245699999
Q ss_pred cccchHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCC------
Q 008430 382 ERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL------ 451 (565)
Q Consensus 382 ~s~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~------ 451 (565)
+...+.+.+++.|.+ ..+.+..+||.++.+++..+++--..|+.+|+++|++++.+|.||+|..||+-+.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999998 3477889999999999999888777787789999999999999999999997443
Q ss_pred ------------CCCcccceecccccccCCCceeEEEEeccccHH
Q 008430 452 ------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 452 ------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 484 (565)
|-|-.+..||.|||||.+ +|.|+-+|++.+..
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 236777899999999985 69999999986554
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.4e-23 Score=212.97 Aligned_cols=285 Identities=24% Similarity=0.324 Sum_probs=195.7
Q ss_pred HHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 136 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
.++..-.+|+..|+-....+..|+.+-++||||.|||.-- +.+...+.. .|+++++|+||..|+.|+++.++
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg-~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFG-LLMSLYLAK-------KGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHH-HHHHHHHHh-------cCCeEEEEecCHHHHHHHHHHHH
Confidence 3333334899999999999999999999999999999643 222222222 47899999999999999999999
Q ss_pred HHhhcCCCceEEE-EECCCCHHHH----HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-----
Q 008430 216 ALSRSLDSFKTAI-VVGGTNIAEQ----RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG----- 285 (565)
Q Consensus 216 ~~~~~~~~~~~~~-~~g~~~~~~~----~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~----- 285 (565)
++........+.. +.+.....+. .....++.||+|+|.+-|...... +.--+|++|++|++|.++..+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHH
Confidence 9986654344444 3333233222 223346899999999988766554 222469999999999765322
Q ss_pred ------CHH-------H----------------HHHHHHh--------CCCCCcEEEEEeecChHH--HHHHHHHcCCCe
Q 008430 286 ------FEP-------Q----------------IREVMQN--------LPDKHQTLLFSATMPVEI--EALAQEYLTDPV 326 (565)
Q Consensus 286 ------~~~-------~----------------~~~i~~~--------~~~~~~~l~~SAT~~~~~--~~~~~~~~~~~~ 326 (565)
|.. . +++++.. -.+..+++..|||..+.- ..+...+++
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 111 0 0111111 112356899999975432 223344433
Q ss_pred EEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecc---cchHHHHHHHHHHcCCceeE
Q 008430 327 QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER---KTRCDEVSEALVAEGLHAVA 403 (565)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s---~~~a~~l~~~l~~~~~~~~~ 403 (565)
+.++.......++...+......++...+++.+.. -+|||++. ++.++++++.|+.+|+++..
T Consensus 302 -FevG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~-------------GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVESESLEKVVELVKKLGD-------------GGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred -CccCccchhhhheeeeeccCccHHHHHHHHHHhCC-------------CeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 23333333445555555444444444444443321 28999999 99999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEc----CcccCCCCccC-ccEEEEcCCC
Q 008430 404 LHGGRNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLP 452 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidip~-v~~Vi~~~~~ 452 (565)
+|+. ....++.|..|+++|||++ ..+-+|+|+|. +..+|+++.|
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9984 3678999999999999987 47889999997 7889999887
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.8e-23 Score=219.89 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=113.8
Q ss_pred EeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCc
Q 008430 346 KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 346 ~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
+....+|...+++.+...... +.|+||||+|++.++.+++.|...|+++..+|+ .+.+|+..+..|+.+..
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~-------grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g 647 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKK-------GQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG 647 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhC-------CCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC
Confidence 344557888888877664432 336999999999999999999999999999997 57899999999999999
Q ss_pred eEEEEcCcccCCCCcc---Ccc-----EEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 426 NILVATDVASRGLDVM---GVA-----HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip---~v~-----~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
.|+|||++++||+||+ .|. +||.+..|.|...|.|+.||+||.|.+|.+..|++.+|...
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9999999999999999 554 34889999999999999999999999999999999887553
No 110
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.92 E-value=1e-24 Score=230.26 Aligned_cols=380 Identities=17% Similarity=0.206 Sum_probs=243.5
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHh---
Q 008430 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--- 156 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~--- 156 (565)
..|+....+...-..+++.+..+-+-......+.. .-+.-..|..+...|..+.. .+|+.||.+.+++++
T Consensus 314 ~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~-~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W 386 (1373)
T KOG0384|consen 314 CTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCK-YRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSW 386 (1373)
T ss_pred ccccchhhhhhhHHHHHHHHhhhhccccCCCCccc-cCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHH
Confidence 44655555555556666666655432222111111 11222344444444433322 689999999999987
Q ss_pred -CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 008430 157 -SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 157 -~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (565)
.+.++|++..+|.|||+.. +.++..+...... .|| .|+|||...+ ..|.++|..|. .+++.++.|+...
T Consensus 387 ~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~---~gp-flvvvplst~-~~W~~ef~~w~----~mn~i~y~g~~~s 456 (1373)
T KOG0384|consen 387 YKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI---HGP-FLVVVPLSTI-TAWEREFETWT----DMNVIVYHGNLES 456 (1373)
T ss_pred HhcccceehhhcCCCcchHH-HHHHHHHHHhhhc---cCC-eEEEeehhhh-HHHHHHHHHHh----hhceeeeecchhH
Confidence 6789999999999999876 6677766664321 233 7999997655 55999999997 4678888888876
Q ss_pred HHHHHHHh----C-----CCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEE
Q 008430 236 AEQRSELR----G-----GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 236 ~~~~~~~~----~-----~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~ 306 (565)
....+... . .++++++|++.++.--.. +.--.+.+++|||||++.+. ...+...+..+.-+. -|++
T Consensus 457 r~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rlli 531 (1373)
T KOG0384|consen 457 RQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RLLI 531 (1373)
T ss_pred HHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc-eeee
Confidence 65544431 2 488999999998633221 22225789999999999865 333444466666555 5778
Q ss_pred EeecC-hHHHHHHHHH-cCCCeEEE---------------------------------eCCcCCCCCceEEEEE------
Q 008430 307 SATMP-VEIEALAQEY-LTDPVQVK---------------------------------VGKVSSPTANVIQILE------ 345 (565)
Q Consensus 307 SAT~~-~~~~~~~~~~-~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~------ 345 (565)
|+||- +.+.++...+ |..|..+. -......+....+++.
T Consensus 532 tgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~l 611 (1373)
T KOG0384|consen 532 TGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDL 611 (1373)
T ss_pred cCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHH
Confidence 88882 2222221100 01110000 0000000000000000
Q ss_pred -------------------------------------------Eeccc-------------hHHHHHHHHHHHH---HHh
Q 008430 346 -------------------------------------------KVSEN-------------EKVDRLLALLVEE---AFL 366 (565)
Q Consensus 346 -------------------------------------------~~~~~-------------~k~~~l~~~l~~~---~~~ 366 (565)
.-..+ ..+..++..-.+. -..
T Consensus 612 Qk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKL 691 (1373)
T KOG0384|consen 612 QKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKL 691 (1373)
T ss_pred HHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHH
Confidence 00000 1111111100000 000
Q ss_pred hhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC---CceEEEEcCcccCCCCccCc
Q 008430 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG---STNILVATDVASRGLDVMGV 443 (565)
Q Consensus 367 ~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~~~~~Gidip~v 443 (565)
-.+....++++|||.+.+...+.|+++|..++++.-.++|....+.|++.++.|... ...+|+||.+.+-|||+..+
T Consensus 692 L~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatA 771 (1373)
T KOG0384|consen 692 LPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATA 771 (1373)
T ss_pred HHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccccc
Confidence 011224567899999999999999999999999999999999999999999999863 56799999999999999999
Q ss_pred cEEEEcCCCCCcccceecccccccCCCceeE--EEEeccc
Q 008430 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA--TSFYTDR 481 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~ 481 (565)
++||+||..|+|..-+|...||+|.||+..| |-|++..
T Consensus 772 DTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 772 DTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999997665 4455554
No 111
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=7e-23 Score=205.81 Aligned_cols=314 Identities=21% Similarity=0.268 Sum_probs=216.6
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
+.+-.+.+..+...+-++|+|+||+|||.. +| +.+.+.. .. ..+++.+.-|+|--+..++++...-.+..-+-
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG-~~--~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAG-FA--SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcc-cc--cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 445566777777888899999999999975 33 2233221 11 13338888899988888888777766543344
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh-hcCC-CHHHHHHHHHhCCCCCc
Q 008430 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMG-FEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~-~~~~-~~~~~~~i~~~~~~~~~ 302 (565)
.++..+--.+ .......|.+.|.+.|++.+..+. .++.+++|||||||.= ...+ ..-.+++++.. ++..+
T Consensus 126 ~VGY~IRFed------~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lk 197 (674)
T KOG0922|consen 126 EVGYTIRFED------STSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLK 197 (674)
T ss_pred eeeeEEEecc------cCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCce
Confidence 4544433221 122357899999999998877543 4778999999999931 1111 11223444433 34578
Q ss_pred EEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEec
Q 008430 303 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~ 382 (565)
+|+||||+..+ ....||.....+.+.. ....+...+..-+..+-++..+..+.+.+.. .+.+=+|||..
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~G---R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-----E~~GDILvFLt 266 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPG---RTFPVEILYLKEPTADYVDAALITVIQIHLT-----EPPGDILVFLT 266 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecC---CCCceeEEeccCCchhhHHHHHHHHHHHHcc-----CCCCCEEEEeC
Confidence 99999999754 6677777643333322 1223333444444444444444444443332 22334999999
Q ss_pred ccchHHHHHHHHHHc------CC--ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCC---
Q 008430 383 RKTRCDEVSEALVAE------GL--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL--- 451 (565)
Q Consensus 383 s~~~a~~l~~~l~~~------~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~--- 451 (565)
.+++.+.+++.|.+. +. -+..+||.++.+++..+++.--.|..+|+++|++++..+.||++..||+-+.
T Consensus 267 GqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~ 346 (674)
T KOG0922|consen 267 GQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQ 346 (674)
T ss_pred CHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEE
Confidence 999999999999875 11 2467999999999999988888899999999999999999999999997443
Q ss_pred ---------------CCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 452 ---------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 452 ---------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
|-|...-.||.|||||.| +|.|+-+|++++...
T Consensus 347 ~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 347 KKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred EeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 336677799999999985 699999999887644
No 112
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.1e-22 Score=206.57 Aligned_cols=327 Identities=17% Similarity=0.171 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|.+||++++.++. ++...|+...+|.|||... +.++..+...... -+.+||||| ..|+.||.++|+.|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~----~~paLIVCP-~Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL----TKPALIVCP-ATIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc----cCceEEEcc-HHHHHHHHHHHHHhC
Confidence 56999999999986 4556899999999999875 5566666654222 245999999 479999999999998
Q ss_pred hcCCCceEEEEECCCCH---------HHHHH----HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC
Q 008430 219 RSLDSFKTAIVVGGTNI---------AEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~---------~~~~~----~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
. .+++.++++.... ..... ....+..|+++|++.+--. ...+.-..++|+|+||.|++-+.+
T Consensus 279 p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 279 P---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred c---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc
Confidence 5 5677777776542 11111 1123466999998877421 112333458999999999998764
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeecC-hHHHHHHHHH-----------------cCCCeEE-------------------
Q 008430 286 FEPQIREVMQNLPDKHQTLLFSATMP-VEIEALAQEY-----------------LTDPVQV------------------- 328 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~~~~~~~~-----------------~~~~~~~------------------- 328 (565)
..+...+..++.. +-+++|+||- +.+.++...+ +..|+..
T Consensus 354 --s~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 3344455555543 3577788871 1111111000 0000000
Q ss_pred ------------------------------Ee-----------------------CCc-----------CCCC--C----
Q 008430 329 ------------------------------KV-----------------------GKV-----------SSPT--A---- 338 (565)
Q Consensus 329 ------------------------------~~-----------------------~~~-----------~~~~--~---- 338 (565)
.. ... ...+ +
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 00 000 0000 0
Q ss_pred ----ceEEE--E-EEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHH-HcCCceeEecCCCCH
Q 008430 339 ----NVIQI--L-EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALHGGRNQ 410 (565)
Q Consensus 339 ----~~~~~--~-~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~-~~~~~~~~~~~~~~~ 410 (565)
...+. + .......|...+..++...... +.++|+|..++.....|...|. ..|+.++.++|.++.
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-------g~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~ 583 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-------GDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPA 583 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-------CCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 00000 0 1112234555555555554433 3369999999999999999999 689999999999999
Q ss_pred HHHHHHHHHhhcCCc--eEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEecc-----ccH
Q 008430 411 SDRESALRDFRNGST--NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD-----RDM 483 (565)
Q Consensus 411 ~~r~~~~~~f~~g~~--~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-----~~~ 483 (565)
..|..++++|.+++. -+|++|.+.+-|+|+..++.||.|||.|+|..-.|..-||.|.|++..|++|-.- ++.
T Consensus 584 ~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEk 663 (923)
T KOG0387|consen 584 ALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEK 663 (923)
T ss_pred chhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHH
Confidence 999999999998764 3678999999999999999999999999999999999999999998777665432 355
Q ss_pred HHHHHHH
Q 008430 484 LLVAQIK 490 (565)
Q Consensus 484 ~~~~~l~ 490 (565)
.+.+++.
T Consensus 664 iY~rQI~ 670 (923)
T KOG0387|consen 664 IYHRQIF 670 (923)
T ss_pred HHHHHHH
Confidence 5555543
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=5.4e-23 Score=223.21 Aligned_cols=331 Identities=20% Similarity=0.207 Sum_probs=209.0
Q ss_pred CCCHHHHHHHHhHhCC---C-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVALSG---R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g---~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..++.|..++..+... . .+++.||||.|||.+++.++....... .....+++++.|++.+.++++++++.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3489999999988744 3 688999999999999988777665542 1147789999999999999999999987
Q ss_pred hcCCCceEEEEECCCCHHHHHHHH---------------hCCCcEEEEccHHHHHH-HHcCCCC-C--CCceEEEecchh
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSEL---------------RGGVSIVVATPGRFLDH-LQQGNTS-L--SRVSFVILDEAD 279 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~~ilv~T~~~l~~~-l~~~~~~-~--~~~~~iIiDE~H 279 (565)
+... .....+.+... ....... ..-..+.++|+-..... .....+. + -..+++|+||+|
T Consensus 271 ~~~~-~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 271 GLFS-VIGKSLHSSSK-EPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred cccc-ccccccccccc-chhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 6532 11111122211 1111000 00122333333333221 1111111 0 124689999999
Q ss_pred HhhcCCCHHHHHHHHHhC-CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEE--eccchHHHHH
Q 008430 280 RMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK--VSENEKVDRL 356 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~~~l 356 (565)
.+.+......+..++..+ .-+..+|+||||+|..+...+...+.....+..........+-...... ........
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-- 426 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQ-- 426 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhh--
Confidence 887663333333333333 2355699999999999998888887765444333110000000000000 00000000
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhh----cCCceEEEEcC
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR----NGSTNILVATD 432 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~ 432 (565)
.............+.+++|.|||+..|.++++.|+..+..+..+||.+...+|.+.++.+. .++..|+|||+
T Consensus 427 ----~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 427 ----EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred ----HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 0111111112234557999999999999999999999888999999999999998888654 46788999999
Q ss_pred cccCCCCccCccEEEEcCCCCCcccceecccccccCC--CceeEEEEeccccHHHHHH
Q 008430 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG--SMGQATSFYTDRDMLLVAQ 488 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 488 (565)
+++.|+|+- .+++|-= +..+...+||+||++|.| ..|.++++...........
T Consensus 503 VIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~ 557 (733)
T COG1203 503 VIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKY 557 (733)
T ss_pred EEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhh
Confidence 999999984 6665543 234788899999999999 5677777776654444333
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1e-21 Score=208.50 Aligned_cols=134 Identities=22% Similarity=0.343 Sum_probs=116.4
Q ss_pred chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEE
Q 008430 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (565)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (565)
..+...++..+..... .+.++||||++++.++.+++.|.+.|+++..+||++++.+|.++++.|+.|+++|||
T Consensus 425 ~~qi~~Ll~eI~~~~~-------~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV 497 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVA-------RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLV 497 (655)
T ss_pred cchHHHHHHHHHHHHc-------CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEE
Confidence 3455666666655432 234699999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccCCCCccCccEEEEcC-----CCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHH
Q 008430 430 ATDVASRGLDVMGVAHVVNLD-----LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 491 (565)
Q Consensus 430 ~T~~~~~Gidip~v~~Vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 491 (565)
||+.+++|+|+|++++||++| .|.+...|+||+||+||. ..|.++++++..+......+..
T Consensus 498 ~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 498 GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999988 688999999999999998 6799999999876655555543
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.2e-21 Score=201.93 Aligned_cols=319 Identities=21% Similarity=0.215 Sum_probs=224.0
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-+.-.++.|+ +..+.||.|||+++++|++...+. |..|.+++|+.-||.|-++++..++..+
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 478999999999999886 789999999999999999877664 7779999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhh-cC---------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM--------- 284 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~-~~--------- 284 (565)
++.++++.++....+....+ .|||+++|...| ++++..+ ......+.+.||||+|.++ ++
T Consensus 147 -GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 147 -GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred -CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 79999999888776655544 589999999887 3444332 1234568999999999654 11
Q ss_pred -----CCHHHHHHHHHhCCCC-----------------------------------------------------------
Q 008430 285 -----GFEPQIREVMQNLPDK----------------------------------------------------------- 300 (565)
Q Consensus 285 -----~~~~~~~~i~~~~~~~----------------------------------------------------------- 300 (565)
.....+..+...+.+.
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 0111122222222110
Q ss_pred -----------------------------------------------------------CcEEEEEeecChHHHHHHHHH
Q 008430 301 -----------------------------------------------------------HQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 301 -----------------------------------------------------------~~~l~~SAT~~~~~~~~~~~~ 321 (565)
..+.|||+|......++.+-|
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 023445555543333333333
Q ss_pred cCCCeEEEeCCcCCCC-CceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCc
Q 008430 322 LTDPVQVKVGKVSSPT-ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 400 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~ 400 (565)
-.+.+ .+.. ..+. ........+.....|...+++.+.+.... +.|+||.|.+++.++.+++.|.+.|++
T Consensus 384 ~l~Vv--~IPt-nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~-------GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 384 DLGVS--VIPP-NKPNIREDEADRVYATAAEKNDAIVEHIAEVHET-------GQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred CCcEE--ECCC-CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 22211 1111 1111 01111234445667888888777665433 336999999999999999999999999
Q ss_pred eeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccC---------------ccEEEEcCCCCCcccceeccccc
Q 008430 401 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG---------------VAHVVNLDLPKTVEDYVHRIGRT 465 (565)
Q Consensus 401 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~---------------v~~Vi~~~~~~s~~~~~Q~~GR~ 465 (565)
...+++.....+-..+-+.-+. -.|.|||+|++||.||.= -=+||....+.|...-.|-.||+
T Consensus 454 h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 454 AVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred ceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 9999987554443333332222 349999999999999862 22788888899999999999999
Q ss_pred ccCCCceeEEEEeccccHHH
Q 008430 466 GRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 466 ~R~g~~g~~~~~~~~~~~~~ 485 (565)
||.|.+|.+-.|++-+|...
T Consensus 532 GRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 532 GRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred ccCCCCCceeEEEEcchhHH
Confidence 99999999999998877544
No 116
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=209.74 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|..||.+.+..+-.++.++|+|||.+|||++. +-+++..++.. ....+|+++|+.+|+.|....+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRes-----D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRES-----DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhc-----CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 478899999999999999999999999999976 55666666653 466799999999999999999888774322
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc---CCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ---GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~---~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~ 299 (565)
-.....+.|....+.... .-+|+|+|+-|+.+...+.. ......++++||+||+|.+++..-+..++.++...+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 222222333322221111 12599999999999888876 344567899999999999987765666777777764
Q ss_pred CCcEEEEEeecCh
Q 008430 300 KHQTLLFSATMPV 312 (565)
Q Consensus 300 ~~~~l~~SAT~~~ 312 (565)
+.+|++|||..+
T Consensus 662 -CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 -CPFLVLSATIGN 673 (1330)
T ss_pred -CCeeEEecccCC
Confidence 568999999843
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.7e-22 Score=192.50 Aligned_cols=168 Identities=23% Similarity=0.258 Sum_probs=129.7
Q ss_pred CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 008430 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~li 379 (565)
..|+|.+||||...-.+.. -+..+...+..... +...+..-+....++.++..+......++ ++||
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGL----lDP~ievRp~~~QvdDL~~EI~~r~~~~e-------RvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGL----LDPEIEVRPTKGQVDDLLSEIRKRVAKNE-------RVLV 451 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCC----CCCceeeecCCCcHHHHHHHHHHHHhcCC-------eEEE
Confidence 3589999999964321111 11111111221111 11223333455677788888877665543 5999
Q ss_pred EecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCC-----CC
Q 008430 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP-----KT 454 (565)
Q Consensus 380 F~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~-----~s 454 (565)
-+-|++.|+.|.++|.+.|+++..+|++...-+|.++++.++.|+.+|||+.+.+-+|+|+|.|.+|..+|.. .|
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888764 48
Q ss_pred cccceecccccccCCCceeEEEEecccc
Q 008430 455 VEDYVHRIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 455 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 482 (565)
-...+|-+|||+|. -.|.|+++.+.--
T Consensus 532 e~SLIQtIGRAARN-~~GkvIlYAD~iT 558 (663)
T COG0556 532 ERSLIQTIGRAARN-VNGKVILYADKIT 558 (663)
T ss_pred cchHHHHHHHHhhc-cCCeEEEEchhhh
Confidence 88899999999997 4699999987643
No 118
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.90 E-value=4.6e-22 Score=191.71 Aligned_cols=317 Identities=15% Similarity=0.196 Sum_probs=215.0
Q ss_pred CCCCHHHHHHHHhHh-CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 142 TRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~-~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..|-|+|++.+...+ .|.++++...+|.|||+.+ +.+..+...+. -.|||||- .+...|.+.+.+|++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyraEw--------plliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRAEW--------PLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhhcC--------cEEEEecH-HHhHHHHHHHHHhccc
Confidence 456899999998766 6678999999999999997 66666655543 28999995 6888899999999986
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
.-. +.++.++..... .+.....|.|.+++.+..+-.. +.-..+.+||+||.|++.+.. ....+.++..+...
T Consensus 267 ~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 532 444444432211 1223356899999988655432 333458999999999886543 44466666666656
Q ss_pred CcEEEEEeecC----hHH---------------HHHHHHHcCCC---eEEEeCC------------------------cC
Q 008430 301 HQTLLFSATMP----VEI---------------EALAQEYLTDP---VQVKVGK------------------------VS 334 (565)
Q Consensus 301 ~~~l~~SAT~~----~~~---------------~~~~~~~~~~~---~~~~~~~------------------------~~ 334 (565)
.++|++|+||. .++ .++...|+... ....... ..
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999993 211 12222222110 0000000 00
Q ss_pred CCCCceEEEEEEec--cchHHHH-----------------------------------HHHHHHHHHHhhhhcCCCCCeE
Q 008430 335 SPTANVIQILEKVS--ENEKVDR-----------------------------------LLALLVEEAFLAEKSCHPFPLT 377 (565)
Q Consensus 335 ~~~~~~~~~~~~~~--~~~k~~~-----------------------------------l~~~l~~~~~~~~~~~~~~~~~ 377 (565)
..++....+..... ....... +.+.+..... ....++.++
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~---l~d~~~~Kf 495 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYF---LPDAPPRKF 495 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcc---cccCCCceE
Confidence 01111111111111 0111111 1111111111 123456789
Q ss_pred EEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC-CceE-EEEcCcccCCCCccCccEEEEcCCCCCc
Q 008430 378 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNI-LVATDVASRGLDVMGVAHVVNLDLPKTV 455 (565)
Q Consensus 378 liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidip~v~~Vi~~~~~~s~ 455 (565)
+|||......+.+...++++++..+.++|..+..+|....+.|+.. ++.| +++..+.+.|+++...+.|++...+|++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999875 4444 5677889999999999999999999999
Q ss_pred ccceecccccccCCCceeEEEEec
Q 008430 456 EDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 456 ~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
...+|.-.|++|.|++..|.++|.
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred ceEEechhhhhhccccceeeEEEE
Confidence 999999999999999877766554
No 119
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=2e-21 Score=202.68 Aligned_cols=323 Identities=16% Similarity=0.186 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHhHhC---C-------CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHH
Q 008430 143 RPTSIQAQAMPVALS---G-------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~---g-------~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~ 212 (565)
.++|+|++++..+.. | ..+|++..+|+|||+.. +++++.++++.+.+.+--.+.|||+| ..|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHH
Confidence 579999999998862 2 24889999999999986 88888888886654334467999999 589999999
Q ss_pred HHHHHhhcCCCceEEEEECCCCH--HHHHHHH-----hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC
Q 008430 213 EVKALSRSLDSFKTAIVVGGTNI--AEQRSEL-----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~-----~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+|.+|.... .+....+++.... ......+ .-..-|++-+++.+.+.... +....++++|+||.|++-+.
T Consensus 316 EF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 316 EFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch-
Confidence 999998742 4566666666653 0000111 12355788899999766554 45567999999999998765
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeecC-hH---------------------------------------------------
Q 008430 286 FEPQIREVMQNLPDKHQTLLFSATMP-VE--------------------------------------------------- 313 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~~-~~--------------------------------------------------- 313 (565)
...+...+..+.-.. -|++|+||- ++
T Consensus 392 -~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 444566666665444 688899981 00
Q ss_pred HHHHHHHHcCC------------CeE-E-EeC---------------------------------------------CcC
Q 008430 314 IEALAQEYLTD------------PVQ-V-KVG---------------------------------------------KVS 334 (565)
Q Consensus 314 ~~~~~~~~~~~------------~~~-~-~~~---------------------------------------------~~~ 334 (565)
+..+...++.. -.. + ... ...
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11111111100 000 0 000 000
Q ss_pred CC-----C-CceE--E----EEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCcee
Q 008430 335 SP-----T-ANVI--Q----ILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 402 (565)
Q Consensus 335 ~~-----~-~~~~--~----~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~ 402 (565)
.. . .... . .........+...|+.++.... ++ ...++.+..|.+...+.+...+.-+|..+.
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~---ek---~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR---EK---LLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh---hh---cceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 00 0 0000 0 0000001122233333331111 11 001233333445555566666666799999
Q ss_pred EecCCCCHHHHHHHHHHhhcCC---ceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec
Q 008430 403 ALHGGRNQSDRESALRDFRNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~---~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
.+||.++..+|+.+++.|.+.. .-+|.++.+.++||++-+.+.||+||+.|+|..-.|+++|+.|.||+..|++|-.
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999999999998743 3366788899999999999999999999999999999999999999988877653
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=9.1e-21 Score=200.40 Aligned_cols=319 Identities=22% Similarity=0.260 Sum_probs=219.4
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
-.|+++|.-+--.+..|+ |..+.||.|||+++.+|++...+. |..|.+++|+.-||.|-++++..++..+
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 478888988777776665 889999999999999999877664 7779999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCCCceEEEecchhHhh-cCC--------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.++++.++....+....+. ++|+++|...| +++|..+- .....+.++||||+|.++ |+.
T Consensus 151 -Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 151 -GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred -CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 799999998887776655544 99999999887 45544331 123679999999999754 110
Q ss_pred -------CHHHHHHHHHhCCC-------------------CC--------------------------------------
Q 008430 286 -------FEPQIREVMQNLPD-------------------KH-------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~-------------------~~-------------------------------------- 301 (565)
....+..+...+.. ..
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 01111111111100 00
Q ss_pred ------------------------------------------------------------------------------cE
Q 008430 302 ------------------------------------------------------------------------------QT 303 (565)
Q Consensus 302 ------------------------------------------------------------------------------~~ 303 (565)
++
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 12
Q ss_pred EEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecc
Q 008430 304 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 304 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s 383 (565)
-|||+|...+-.++..-|-.+.+.+.... .... .......+....+|...+++.+...... +.|+||-+.|
T Consensus 388 sGMTGTa~te~~Ef~~iY~l~Vv~IPTnk-P~~R-~D~~d~vy~t~~eK~~Ai~~ei~~~~~~-------GrPVLVGT~S 458 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGLDVVVIPPNK-PLAR-KDFNDLVYLTAEEKYAAIITDIKECMAL-------GRPVLVGTAT 458 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEEECCCCC-Cccc-ccCCCeEEcCHHHHHHHHHHHHHHHHhC-------CCCEEEEeCC
Confidence 23333332222222222211111111000 0000 1112234556677888888887765543 3369999999
Q ss_pred cchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC-CceEEEEcCcccCCCCcc---------------------
Q 008430 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNILVATDVASRGLDVM--------------------- 441 (565)
Q Consensus 384 ~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidip--------------------- 441 (565)
++..+.+++.|...|++.-++++.....+-.-+- +.| .-.|.|||+|++||.||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~ 535 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIA 535 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHH
Confidence 9999999999999999988888875544333333 334 335999999999999994
Q ss_pred ----------------CccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 442 ----------------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 442 ----------------~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
+-=+||-...+.|...-.|-.||+||.|.+|.+-.|++-+|...
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 11278888889999999999999999999999999998876544
No 121
>COG4889 Predicted helicase [General function prediction only]
Probab=99.88 E-value=8e-23 Score=208.40 Aligned_cols=365 Identities=19% Similarity=0.229 Sum_probs=215.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
-+|+.+.. .++..++.-+.-.+|+|+|+.|++...+| .+.=+++++|+|||+++ +-+.+.+.. .+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~---------~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA---------AR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh---------hh
Confidence 34544433 34555666667789999999999998865 23566788999999997 666665543 56
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH------------------------HH-HHHhCCCcEEEE
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE------------------------QR-SELRGGVSIVVA 251 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------------------~~-~~~~~~~~ilv~ 251 (565)
+||+||..+|+.|..+++..--.. .++...++.+..... +. .....+--|||+
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 999999999999988877664322 344444444332111 00 111234669999
Q ss_pred ccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC-----CCCcEEEEEeecChHH---HHHHH----
Q 008430 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEI---EALAQ---- 319 (565)
Q Consensus 252 T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~~~~---~~~~~---- 319 (565)
|+|.+...-.-....+..|++||+||||+-....+...-..-+.... +..+-+.|||||..-. ...++
T Consensus 287 TYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~ 366 (1518)
T COG4889 287 TYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSA 366 (1518)
T ss_pred cccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccc
Confidence 99999877776677788999999999998653211110000000000 1123588999983211 11111
Q ss_pred --------------------------HHcCCCeEEEeCCcCCCCCceEEE-EEEec------cchHHHHHHHHHHHHHHh
Q 008430 320 --------------------------EYLTDPVQVKVGKVSSPTANVIQI-LEKVS------ENEKVDRLLALLVEEAFL 366 (565)
Q Consensus 320 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~k~~~l~~~l~~~~~~ 366 (565)
.++.+...+.+.-.........+. ..... ...+......-+.+....
T Consensus 367 ~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~ 446 (1518)
T COG4889 367 ELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGE 446 (1518)
T ss_pred eeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccc
Confidence 111111111110000000000000 00000 111222222222222110
Q ss_pred h------hhcCCCCCeEEEEecccchHHHHHHHHHH-------------cCC--ceeEecCCCCHHHHHHHHH---Hhhc
Q 008430 367 A------EKSCHPFPLTIVFVERKTRCDEVSEALVA-------------EGL--HAVALHGGRNQSDRESALR---DFRN 422 (565)
Q Consensus 367 ~------~~~~~~~~~~liF~~s~~~a~~l~~~l~~-------------~~~--~~~~~~~~~~~~~r~~~~~---~f~~ 422 (565)
. .....+..++|-||.+++....+++.|.. .++ .+-.++|.|+..+|...+. .|..
T Consensus 447 ~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ 526 (1518)
T COG4889 447 DNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEP 526 (1518)
T ss_pred cccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCc
Confidence 0 01122345789999999988777777643 133 3445678999999965544 3455
Q ss_pred CCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCC-ceeEEEEe---------------ccccHHHH
Q 008430 423 GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS-MGQATSFY---------------TDRDMLLV 486 (565)
Q Consensus 423 g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~---------------~~~~~~~~ 486 (565)
.+++||--...+.+|||+|.++.||++++-.+..+.+|.+||+.|... +..+++++ .......+
T Consensus 527 neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~V 606 (1518)
T COG4889 527 NECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNV 606 (1518)
T ss_pred chheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHH
Confidence 789999999999999999999999999999999999999999999543 23333332 22345556
Q ss_pred HHHHHHHHhhhc
Q 008430 487 AQIKKAIVDAES 498 (565)
Q Consensus 487 ~~l~~~~~~~~~ 498 (565)
+++.+++...++
T Consensus 607 WqVlnALRShD~ 618 (1518)
T COG4889 607 WQVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHHhcCH
Confidence 666666655443
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.88 E-value=4.4e-21 Score=203.50 Aligned_cols=320 Identities=18% Similarity=0.211 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
..+.++.+.+..+.+.+.++|.|.||+|||...-.-+++...... ...++++--|+|--|.-+++++..--....
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 457788899999988899999999999999876555666655543 345578888999888888877776554333
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH-hhcCCCHHHHHHHHHhCCCCC
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~-~~~~~~~~~~~~i~~~~~~~~ 301 (565)
+-.++.-.+..+ .......+++||.+.|++.+.. ...+..+..||+||+|. -.+.+|.-.+.+.+-..++..
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 445555444432 2223478999999999999877 45577899999999994 334556555566666666889
Q ss_pred cEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCC----------------ceEEE------------EEEeccchHH
Q 008430 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA----------------NVIQI------------LEKVSENEKV 353 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~------------~~~~~~~~k~ 353 (565)
++|+||||+..+ ....|++....+.+.....+.. ...+. ......+ -.
T Consensus 321 kvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-id 396 (924)
T KOG0920|consen 321 KVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE-ID 396 (924)
T ss_pred eEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc-cc
Confidence 999999999744 5556665544443321111000 00000 0000111 11
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-------CCceeEecCCCCHHHHHHHHHHhhcCCce
Q 008430 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
..++..+.++.... ...+.+|||.+...++..+.+.|... .+-+..+|+.++..+++.+...--.|..+
T Consensus 397 ~~Li~~li~~I~~~----~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 397 YDLIEDLIEYIDER----EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred HHHHHHHHHhcccC----CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 23333344433332 33557999999999999999999653 35677899999999999999999999999
Q ss_pred EEEEcCcccCCCCccCccEEEEc--------CCCC----------CcccceecccccccCCCceeEEEEeccccH
Q 008430 427 ILVATDVASRGLDVMGVAHVVNL--------DLPK----------TVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~--------~~~~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 483 (565)
|+++|.+++..|.|++|-.||+. |+-. |...-.||.|||||. +.|.|+-+++....
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 99999999999999999999974 4332 455569999999998 78999999987543
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.88 E-value=1.9e-21 Score=205.09 Aligned_cols=326 Identities=18% Similarity=0.235 Sum_probs=214.9
Q ss_pred CCCHHHHHHHHhHh--C--CCCEEEEccCCChhHHHHHHHHHHHHHhc-CCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 143 RPTSIQAQAMPVAL--S--GRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~--~--g~~~li~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.++.||++.++++. + +-+.|+|..+|.|||+..+--+.....+. ......+..-.|||||. .|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46899999999885 2 23689999999999998733332222222 11111123348999995 7999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~ 297 (565)
+.. +++..++|....+...+....+.+|+|++++.+-+-... +.-.++.|+|+||-|-+.+. ...+.+.+..+
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 864 667777777665555555556789999999998643332 22336889999999977654 44556666666
Q ss_pred CCCCcEEEEEeecCh-HHHHH-----------------------------------------------------------
Q 008430 298 PDKHQTLLFSATMPV-EIEAL----------------------------------------------------------- 317 (565)
Q Consensus 298 ~~~~~~l~~SAT~~~-~~~~~----------------------------------------------------------- 317 (565)
..+. .+.+|+||-. ++.++
T Consensus 1127 ~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 6665 5778999810 00000
Q ss_pred --------------HHHHc---------------CC---CeEEEe--CCcCCC----------------CCceEEEE---
Q 008430 318 --------------AQEYL---------------TD---PVQVKV--GKVSSP----------------TANVIQIL--- 344 (565)
Q Consensus 318 --------------~~~~~---------------~~---~~~~~~--~~~~~~----------------~~~~~~~~--- 344 (565)
++.|. .. .....+ ...... +.+..-..
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 00000 00 000000 000000 00000000
Q ss_pred ------------------EEeccchHHHHHHHHHHHHHHhhhhc-------CCCCCeEEEEecccchHHHHHHHHHHcCC
Q 008430 345 ------------------EKVSENEKVDRLLALLVEEAFLAEKS-------CHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 345 ------------------~~~~~~~k~~~l~~~l~~~~~~~~~~-------~~~~~~~liF~~s~~~a~~l~~~l~~~~~ 399 (565)
..+....|..++-+++.+........ ...++|+||||+-+..++.+.+-|.+...
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 00112234444444444332221110 12467899999999999999998877643
Q ss_pred ---ceeEecCCCCHHHHHHHHHHhhcC-CceEE-EEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeE
Q 008430 400 ---HAVALHGGRNQSDRESALRDFRNG-STNIL-VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 474 (565)
Q Consensus 400 ---~~~~~~~~~~~~~r~~~~~~f~~g-~~~vL-v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 474 (565)
....++|..++.+|.++.++|.++ .++|| ++|.+.+-|+|+.+.++||+++-.|++-.-+|.+.||+|.|++..|
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 345799999999999999999998 78876 5778999999999999999999999999999999999999998666
Q ss_pred EEE
Q 008430 475 TSF 477 (565)
Q Consensus 475 ~~~ 477 (565)
.++
T Consensus 1446 NVy 1448 (1549)
T KOG0392|consen 1446 NVY 1448 (1549)
T ss_pred eee
Confidence 544
No 124
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=5.9e-21 Score=190.03 Aligned_cols=317 Identities=19% Similarity=0.234 Sum_probs=217.4
Q ss_pred CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.....+++-.+.+.++...+-++|.|+||||||.. +|- ++.+.. ... .|+++-+.-|++--|..++.+..+-++
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQ--yL~EaG-ytk-~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQ--YLYEAG-YTK-GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccH--HHHhcc-ccc-CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 44456778888888888888899999999999986 442 333321 111 355577888999888888777776553
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH-hhcCCCHHHHHHHHHhCC
Q 008430 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~-~~~~~~~~~~~~i~~~~~ 298 (565)
.--+..++.-+--++ ......-+-++|.++|++.+.. ...+..+++|||||||. -+..+..-.+.+=+..++
T Consensus 336 vkLG~eVGYsIRFEd------cTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFED------CTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred cccccccceEEEecc------ccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 211222322221111 1113355779999999987764 35677899999999994 122222222333345667
Q ss_pred CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEE
Q 008430 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTI 378 (565)
Q Consensus 299 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~l 378 (565)
+..++|++|||+..+ ....|+.+.-.+.+.. ....+...+...+..+.++..+..+...... .+.+-+|
T Consensus 409 pdLKllIsSAT~DAe---kFS~fFDdapIF~iPG---RRyPVdi~Yt~~PEAdYldAai~tVlqIH~t-----qp~GDIL 477 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE---KFSAFFDDAPIFRIPG---RRYPVDIFYTKAPEADYLDAAIVTVLQIHLT-----QPLGDIL 477 (902)
T ss_pred CcceEEeeccccCHH---HHHHhccCCcEEeccC---cccceeeecccCCchhHHHHHHhhheeeEec-----cCCccEE
Confidence 888999999999654 5566776654443322 2233444455555555555555544433222 3334599
Q ss_pred EEecccchHHHHHHHHHHc---------CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEc
Q 008430 379 VFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 379 iF~~s~~~a~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
||..-.++.+...+.|.+. .+-++.+|+.++.+.+..+++---.|-.+|++||++++..+.|++|..||+-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 9999999888877777653 3457789999999999999888888999999999999999999999999974
Q ss_pred CC------------------CCCcccceecccccccCCCceeEEEEeccc
Q 008430 450 DL------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 450 ~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
+. |-|-..-.||+|||||.| +|.|+-+|+..
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 43 235666799999999997 59999999854
No 125
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.87 E-value=9.7e-21 Score=192.27 Aligned_cols=316 Identities=17% Similarity=0.201 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|.+||.-.++++. .+-+.|++..+|.|||... ++++..+.... ..+.-|||||...| ..|.++|.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g-----~~gpHLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG-----NPGPHLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC-----CCCCcEEEecchhH-HHHHHHHHHhC
Confidence 48899999999886 4457899999999999875 77777766643 23336999998665 66999999998
Q ss_pred hcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHH-cCCCCCCCceEEEecchhHhhcCCCHHHHHHH
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~-~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i 293 (565)
. .+++..++|........+.. ..+++|+++|+.....--. +..+.-.+|+++|+||.|.+.+.. ..+|..+
T Consensus 472 P---sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 472 P---SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred C---ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 4 68899999987544433222 1369999999987631111 011223368999999999887764 4556666
Q ss_pred HHhCCCCCcEEEEEeecC-hHHHHHHHH-------------------------------------------------H--
Q 008430 294 MQNLPDKHQTLLFSATMP-VEIEALAQE-------------------------------------------------Y-- 321 (565)
Q Consensus 294 ~~~~~~~~~~l~~SAT~~-~~~~~~~~~-------------------------------------------------~-- 321 (565)
+.-- .+ +-|++|+||- +++.+++.. |
T Consensus 548 M~I~-An-~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 MSIN-AN-FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred cccc-cc-ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 5433 33 3688899981 111111000 0
Q ss_pred ----------cC-CCeEEEe----------------------CCcCCC--CCc--eE----------EEEEEe-------
Q 008430 322 ----------LT-DPVQVKV----------------------GKVSSP--TAN--VI----------QILEKV------- 347 (565)
Q Consensus 322 ----------~~-~~~~~~~----------------------~~~~~~--~~~--~~----------~~~~~~------- 347 (565)
+. ....+.. ...... ... +. -.+...
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00 0000000 000000 000 00 000000
Q ss_pred ----------------------------------------------------ccchHHHHHHHHHHHHHHhhhhcCCCCC
Q 008430 348 ----------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFP 375 (565)
Q Consensus 348 ----------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~ 375 (565)
-...|...|-.+|.+. ...+.
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~-------k~~G~ 778 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKI-------KKKGD 778 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHH-------hhcCC
Confidence 0112222222222222 23346
Q ss_pred eEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCC-c-eEEEEcCcccCCCCccCccEEEEcCCCC
Q 008430 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-T-NILVATDVASRGLDVMGVAHVVNLDLPK 453 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vLv~T~~~~~Gidip~v~~Vi~~~~~~ 453 (565)
++|||..-....+-|...|.-.++....++|.+.-.+|+.+++.|...+ + -+|++|.+.+-|||+..+++||.+|...
T Consensus 779 RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dF 858 (941)
T KOG0389|consen 779 RVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDF 858 (941)
T ss_pred EEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCC
Confidence 7999999999999999999999999999999999999999999998765 3 4678999999999999999999999999
Q ss_pred CcccceecccccccCCCceeEEEEe
Q 008430 454 TVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 454 s~~~~~Q~~GR~~R~g~~g~~~~~~ 478 (565)
++-+-.|.-.||+|.|+...|.++-
T Consensus 859 NP~dD~QAEDRcHRvGQtkpVtV~r 883 (941)
T KOG0389|consen 859 NPYDDKQAEDRCHRVGQTKPVTVYR 883 (941)
T ss_pred CCcccchhHHHHHhhCCcceeEEEE
Confidence 9999999999999999976665543
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=1.3e-19 Score=201.19 Aligned_cols=347 Identities=19% Similarity=0.231 Sum_probs=208.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHH----hHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l~----~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
+.+.+.+...||. +++.|.+++. .+.+++++++.||||+|||++|++|++.... ++.+++|.+||++
T Consensus 233 ~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~~ 303 (850)
T TIGR01407 233 SLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTKV 303 (850)
T ss_pred HHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcHH
Confidence 3556666667775 8999998776 4557788999999999999999999987654 1557999999999
Q ss_pred hHHHHHH-HHHHHhhcCC-CceEEEEECCCCHH-----------------------------------------------
Q 008430 206 LAQQIEK-EVKALSRSLD-SFKTAIVVGGTNIA----------------------------------------------- 236 (565)
Q Consensus 206 L~~Q~~~-~~~~~~~~~~-~~~~~~~~g~~~~~----------------------------------------------- 236 (565)
|..|+.. .+..+.+..+ .+++..+.|..+.-
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 3444332211 35566666543210
Q ss_pred ------------------------HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-------
Q 008430 237 ------------------------EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG------- 285 (565)
Q Consensus 237 ------------------------~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~------- 285 (565)
.........++|||+...-|+..+......+...+++||||||++.+..
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0000112357899999998887765443334556899999999875310
Q ss_pred C-----HHH----------------------------------------------------------------HHHHHHh
Q 008430 286 F-----EPQ----------------------------------------------------------------IREVMQN 296 (565)
Q Consensus 286 ~-----~~~----------------------------------------------------------------~~~i~~~ 296 (565)
+ ... +...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 000 0000000
Q ss_pred -----------C-------------------------------------CCCCcEEEEEeecChH-HHHHHHHHcCCC-e
Q 008430 297 -----------L-------------------------------------PDKHQTLLFSATMPVE-IEALAQEYLTDP-V 326 (565)
Q Consensus 297 -----------~-------------------------------------~~~~~~l~~SAT~~~~-~~~~~~~~~~~~-~ 326 (565)
+ +....+|++|||+... -.......++-+ .
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0 0012578899998632 112233223311 1
Q ss_pred -EEEeCCcCCCCCceEEEE--EEec------cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH-
Q 008430 327 -QVKVGKVSSPTANVIQIL--EKVS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA- 396 (565)
Q Consensus 327 -~~~~~~~~~~~~~~~~~~--~~~~------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~- 396 (565)
.............-...+ ..++ .......+...+.+.... ..+++|||++|....+.+++.|..
T Consensus 624 ~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~------~~g~~LVlftS~~~l~~v~~~L~~~ 697 (850)
T TIGR01407 624 HFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI------TSPKILVLFTSYEMLHMVYDMLNEL 697 (850)
T ss_pred ccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 111110000100101111 1111 111222333333332211 224699999999999999999975
Q ss_pred ---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCcc--EEEEcCCCCC-----------------
Q 008430 397 ---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA--HVVNLDLPKT----------------- 454 (565)
Q Consensus 397 ---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~--~Vi~~~~~~s----------------- 454 (565)
.++.+ +..+.. ..|..++++|++|+..||+||+.+.+|||+|+.. .||+.+.|..
T Consensus 698 ~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~ 774 (850)
T TIGR01407 698 PEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQE 774 (850)
T ss_pred ccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 23333 333333 4789999999999999999999999999999866 5577666531
Q ss_pred -------------cccceecccccccCCCceeEEEEeccc--cHHHHHHHHHHHH
Q 008430 455 -------------VEDYVHRIGRTGRGGSMGQATSFYTDR--DMLLVAQIKKAIV 494 (565)
Q Consensus 455 -------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~~~ 494 (565)
...+.|.+||.-|...+.-++++++.+ ...+-+.+.+.+.
T Consensus 775 g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 775 GKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 122389999999988765567777765 3344455555543
No 127
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.6e-20 Score=187.38 Aligned_cols=311 Identities=19% Similarity=0.217 Sum_probs=203.7
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
...+.+.+..+..++-++|++.||||||.... ++++... .. +.+-+-+.-|++.-|..++++...-++..-+-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~----QyL~edG-Y~--~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLA----QYLYEDG-YA--DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhH----HHHHhcc-cc--cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 44555666666677779999999999997632 3333321 11 12345556699999888888888776433233
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh-hcCCCHHHHHHHHHhCCCCCcE
Q 008430 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFEPQIREVMQNLPDKHQT 303 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~-~~~~~~~~~~~i~~~~~~~~~~ 303 (565)
.++.-+--... -.....|-++|.+.|++..... -.++.+++||+||||.= ++.+..--+.+....-+.+.++
T Consensus 431 ~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 431 TVGYSIRFEDV------TSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred ccceEEEeeec------CCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 33332222111 1134668899999998765543 34678999999999942 2222111122222233447789
Q ss_pred EEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecc
Q 008430 304 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 304 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s 383 (565)
|.+|||+... .+..|+++.-.+.+. .....+...+...+.++.+...+......... .+.+-+|||...
T Consensus 504 iVtSATm~a~---kf~nfFgn~p~f~Ip---GRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~-----~~~GdilIfmtG 572 (1042)
T KOG0924|consen 504 IVTSATMDAQ---KFSNFFGNCPQFTIP---GRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLS-----GPPGDILIFMTG 572 (1042)
T ss_pred EEeeccccHH---HHHHHhCCCceeeec---CCccceEEEeccCchHHHHHHHHhhheEeecc-----CCCCCEEEecCC
Confidence 9999999644 445566633333322 22233444444444444444444433322222 233449999988
Q ss_pred cchHHHHHHHHH----Hc------CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCC--
Q 008430 384 KTRCDEVSEALV----AE------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-- 451 (565)
Q Consensus 384 ~~~a~~l~~~l~----~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~-- 451 (565)
.+..+..+..+. +. ++.+..+++.++.+.+.+++..-..|..++||+|++++..+.+|++.+||..+.
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 876655555443 32 577899999999999999998888899999999999999999999999998654
Q ss_pred ----------------CCCcccceecccccccCCCceeEEEEeccc
Q 008430 452 ----------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 452 ----------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|-|...--||.|||||.| +|.|+-+|+..
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 346666789999999996 69999999874
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=6.6e-20 Score=196.40 Aligned_cols=125 Identities=23% Similarity=0.337 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEE
Q 008430 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
.+...++..+..... .+.++||||++++.|+.+++.|.+.|+++..+||++++.+|..+++.|+.|++.|+||
T Consensus 430 ~q~~~L~~~L~~~~~-------~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~ 502 (652)
T PRK05298 430 GQVDDLLSEIRKRVA-------KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (652)
T ss_pred ccHHHHHHHHHHHHh-------CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEE
Confidence 345566666655432 2346999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCccCccEEEEcCC-----CCCcccceecccccccCCCceeEEEEeccccH
Q 008430 431 TDVASRGLDVMGVAHVVNLDL-----PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 483 (565)
|+++++|+|+|++++||+++. |.+...|+||+||+||. ..|.++++++..+.
T Consensus 503 t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 503 INLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred eCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 999999999999999999885 67889999999999996 68999999985433
No 129
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=9e-20 Score=168.63 Aligned_cols=186 Identities=44% Similarity=0.623 Sum_probs=148.3
Q ss_pred CCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 139 HEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.++.+|+++|.+++..+..+ +.+++.++||+|||.+++..++..+... ...++||++|+..++.|+.+.+...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG------KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc------CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999988 8999999999999998877777765542 1457999999999999999999998
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCC-cEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHh
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGV-SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
+... ........++............+. +++++|++.+.+...........+++|||||+|++....+...+..++..
T Consensus 78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 78 GPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred hccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 7643 223344444544333333444444 99999999999998887667778999999999999875678888888888
Q ss_pred CCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeC
Q 008430 297 LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (565)
Q Consensus 297 ~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
+.+..+++++||||+.........++.....+...
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 87778899999999988888888888766655544
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5e-19 Score=185.25 Aligned_cols=318 Identities=19% Similarity=0.221 Sum_probs=218.7
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.-+--.+..|+ |..+.||-|||+++.+|+.-..+. |..|-||+...-||..-++++..++..+
T Consensus 77 ~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 378999998888887775 899999999999999998766554 6679999999999999999999988877
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCCCceEEEecchhHhh-cCC--------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++...+....+..... .|||+++|...| ++++..+- .....+.+.||||+|.++ +..
T Consensus 147 -GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 147 -GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred -CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 79999988877666554443 599999999887 55555431 224568899999999654 110
Q ss_pred -------CHHHHHHHHHhCCC-------CC--------------------------------------------------
Q 008430 286 -------FEPQIREVMQNLPD-------KH-------------------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~-------~~-------------------------------------------------- 301 (565)
.......+...+.. ..
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 11111222222211 00
Q ss_pred -----------------------------------------------------------cEEEEEeecChHHHHHHHHHc
Q 008430 302 -----------------------------------------------------------QTLLFSATMPVEIEALAQEYL 322 (565)
Q Consensus 302 -----------------------------------------------------------~~l~~SAT~~~~~~~~~~~~~ 322 (565)
++-|||+|...+-.++..-|-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 233444444333333332222
Q ss_pred CCCeEEEeCCcCCCCC-ceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCce
Q 008430 323 TDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (565)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~ 401 (565)
...+.+.. ..+.. .-.....+.....|...+++.+...... +.|+||.|.+++.++.+++.|.+.|++.
T Consensus 384 l~Vv~IPT---nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~-------gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 384 MRVNVVPT---NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK-------GQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred CCEEECCC---CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 21111111 11100 0011123445667888887777665432 3469999999999999999999999999
Q ss_pred eEecCCCCHHHHHHHHHHhhcC-CceEEEEcCcccCCCCccCcc--------EEEEcCCCCCcccceecccccccCCCce
Q 008430 402 VALHGGRNQSDRESALRDFRNG-STNILVATDVASRGLDVMGVA--------HVVNLDLPKTVEDYVHRIGRTGRGGSMG 472 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidip~v~--------~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g 472 (565)
..+++.... ++..+-. +.| .-.|.|||+|++||.||.--. +||....+.|...-.|..||+||.|.+|
T Consensus 454 ~vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 999986443 3332222 445 346999999999999996322 8999999999999999999999999999
Q ss_pred eEEEEeccccHHH
Q 008430 473 QATSFYTDRDMLL 485 (565)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (565)
.+-.|++-+|...
T Consensus 531 ss~f~lSLeD~L~ 543 (925)
T PRK12903 531 ESRFFISLDDQLF 543 (925)
T ss_pred cceEEEecchHHH
Confidence 9999998877544
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.84 E-value=3.9e-20 Score=195.77 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=188.8
Q ss_pred EEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH----
Q 008430 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE---- 237 (565)
Q Consensus 162 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 237 (565)
+..+.+|||||.+| +.++...+.. |+.+||++|...|+.|+.+.|+..++ ...+..+.++....+
T Consensus 164 i~~~~~GSGKTevy-l~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRL-AAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHH
Confidence 44444699999999 5666666663 77899999999999999999999885 235677777766553
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-----CHHHHHHHHHhCCCCCcEEEEEeecCh
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-----~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
+.....+..+|||+|...++ .++.++++|||||-|.-.... |...-..++.....+..+|+.||||+.
T Consensus 233 w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 44455677999999999998 889999999999999544211 222222233333456779999999988
Q ss_pred HHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEE---eccc------hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecc
Q 008430 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK---VSEN------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s 383 (565)
+................-.......+.+...-.. ...+ .-...+++.+.+....+ ++|+|.|+
T Consensus 306 es~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g--------qvll~lnR 377 (665)
T PRK14873 306 EAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG--------PVLVQVPR 377 (665)
T ss_pred HHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC--------cEEEEecC
Confidence 7665544332211110000011111122111100 0000 01123445554443322 49999999
Q ss_pred cchH-----------------------------------------------------------HHHHHHHHHc--CCcee
Q 008430 384 KTRC-----------------------------------------------------------DEVSEALVAE--GLHAV 402 (565)
Q Consensus 384 ~~~a-----------------------------------------------------------~~l~~~l~~~--~~~~~ 402 (565)
+..+ +.+++.|.+. +.++.
T Consensus 378 rGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~ 457 (665)
T PRK14873 378 RGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV 457 (665)
T ss_pred CCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE
Confidence 8876 4555555443 33444
Q ss_pred EecCCCCHHHHHHHHHHhhcCCceEEEEcC----cccCCCCccCccEEEEcCCC--CC----------cccceecccccc
Q 008430 403 ALHGGRNQSDRESALRDFRNGSTNILVATD----VASRGLDVMGVAHVVNLDLP--KT----------VEDYVHRIGRTG 466 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~----~~~~Gidip~v~~Vi~~~~~--~s----------~~~~~Q~~GR~~ 466 (565)
.+. ++.+++.|. ++.+|||+|+ ++. +++++|+.+|.. .+ ...+.|.+||+|
T Consensus 458 r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagrag 524 (665)
T PRK14873 458 TSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVR 524 (665)
T ss_pred EEC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhc
Confidence 433 235788886 5999999999 555 367777665543 22 334489999999
Q ss_pred cCCCceeEEEEeccccHHHHHHH---------HHHHHhhhcCCcchhh
Q 008430 467 RGGSMGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFA 505 (565)
Q Consensus 467 R~g~~g~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~ 505 (565)
|.+..|.+++.. ..+...+..+ ++.+.+.+.....+|.
T Consensus 525 r~~~~G~V~iq~-~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~ 571 (665)
T PRK14873 525 PRADGGQVVVVA-ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAV 571 (665)
T ss_pred CCCCCCEEEEEe-CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCce
Confidence 999999999986 4444444433 3445555555444433
No 132
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-18 Score=176.98 Aligned_cols=310 Identities=22% Similarity=0.260 Sum_probs=195.7
Q ss_pred HHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceE
Q 008430 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 149 ~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
++.++.|..+--+||||.||||||.. +|-+ +++.. .....++.-+=|.-|+|--+.-++++...-++.+ +-.+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--chHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccce
Confidence 45666666666699999999999976 4433 33221 1111224456666799988777777766655443 2333
Q ss_pred EE--EECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhh-cCC----CHHHHHHHHHhCCC
Q 008430 227 AI--VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMG----FEPQIREVMQNLPD 299 (565)
Q Consensus 227 ~~--~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~-~~~----~~~~~~~i~~~~~~ 299 (565)
+. -+.+ .......|.|+|.+.|++.+... +.+..++.|||||||.=. +.+ ...++-.+......
T Consensus 337 sYqIRfd~--------ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 337 SYQIRFDG--------TIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred eEEEEecc--------ccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 33 3333 33456889999999999888753 567889999999999421 111 11222222222222
Q ss_pred ------CCcEEEEEeecChHHHHHHHHHcCCC-eEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCC
Q 008430 300 ------KHQTLLFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 300 ------~~~~l~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ 372 (565)
..++|+||||+......-.+.++..+ -.+.+.. ....+. ..+......+++.+...+......+ -
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA---RQfPVs---IHF~krT~~DYi~eAfrKtc~IH~k--L 479 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA---RQFPVS---IHFNKRTPDDYIAEAFRKTCKIHKK--L 479 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeec---ccCceE---EEeccCCCchHHHHHHHHHHHHhhc--C
Confidence 45699999999544322222233221 1222211 111122 2222222335555555554433332 4
Q ss_pred CCCeEEEEecccchHHHHHHHHHHc-------------------------------------------------------
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAE------------------------------------------------------- 397 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~------------------------------------------------------- 397 (565)
|.+.+|||+....+++.|++.|++.
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 5566999999999999999888652
Q ss_pred --------------------------------------------CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc
Q 008430 398 --------------------------------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (565)
Q Consensus 398 --------------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (565)
.+-|..+++=++.+++..+++.--+|..-++|+|++
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 012555666677777888888778888889999999
Q ss_pred ccCCCCccCccEEEEcCCC--------C----------CcccceecccccccCCCceeEEEEeccc
Q 008430 434 ASRGLDVMGVAHVVNLDLP--------K----------TVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 434 ~~~Gidip~v~~Vi~~~~~--------~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
++..+.||++..||+.+.- . |-..--||+|||||.| +|.||-+|+..
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999985543 2 3444489999999997 59999999764
No 133
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=5.3e-19 Score=170.41 Aligned_cols=332 Identities=19% Similarity=0.246 Sum_probs=220.8
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeE
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 197 (565)
..+..|...+.++...+-+++..-...+..+.+-+..+.+++-++++|.||+|||...---.+...+.. ...+
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v 94 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGV 94 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccce
Confidence 336778888899988888887776667888888888888888999999999999976433333333332 2447
Q ss_pred EEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecc
Q 008430 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 198 lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 277 (565)
...-|++.-+.+++.+...-+.-.-+-.++..+.-++.......+ -++|.++|++...... .+..+++||+||
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L------ky~tDgmLlrEams~p-~l~~y~viiLDe 167 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL------KYCTDGMLLREAMSDP-LLGRYGVIILDE 167 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH------HHhcchHHHHHHhhCc-ccccccEEEech
Confidence 777899988888887777655322223333332222222222222 2788888877666543 467899999999
Q ss_pred hhHh-hcCC-CHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHH
Q 008430 278 ADRM-LDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 278 ~H~~-~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 355 (565)
||.= +..+ ..-.++.++..- ++.++|.||||+... .++.|+.++-.+.+.. ...+..++..-...+.++.
T Consensus 168 ahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 168 AHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHH
Confidence 9942 1111 122234444444 588899999998543 6667777766665543 1223333333344556666
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc---------CCceeEecCCCCHHHHHHHHHHhh---cC
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFR---NG 423 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~g 423 (565)
.+..+.+.+..... +-+|+|....++.+..++.+... .+.|..+| +.+...+++-.. +|
T Consensus 240 airtV~qih~~ee~-----GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEP-----GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred HHHHHHHHHhccCC-----CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 66666665544433 33999999999998888888743 24677787 333333332221 12
Q ss_pred --CceEEEEcCcccCCCCccCccEEEEcCC------------------CCCcccceecccccccCCCceeEEEEeccc
Q 008430 424 --STNILVATDVASRGLDVMGVAHVVNLDL------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 424 --~~~vLv~T~~~~~Gidip~v~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
..+|+|+|.+++..+.++.+.+||+-+. |.|...-.||.|||||. .+|.|+.+|++.
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 3579999999999999999999997543 34666778999999997 689999999875
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.83 E-value=4.5e-18 Score=179.36 Aligned_cols=272 Identities=19% Similarity=0.186 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|++.|.-+.-.+..| .|+.+.||.|||+++.+|+.-..+. |..|.||+++..||.+-++.+..++..+
T Consensus 76 r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~L- 144 (870)
T CHL00122 76 RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFL- 144 (870)
T ss_pred CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHc-
Confidence 5889998887776655 5899999999999999998755543 6679999999999999999999999887
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCCCceEEEecchhHhh-cCC---------
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG--------- 285 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~H~~~-~~~--------- 285 (565)
++.+++..++....+.... ..+||+++|...| ++++..+- .....+.+.||||+|.++ +..
T Consensus 145 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 7999999888877665444 4589999999877 34444331 234568999999999654 110
Q ss_pred ------CHHHHHHHHHhCCCC-----------------------------------------------------------
Q 008430 286 ------FEPQIREVMQNLPDK----------------------------------------------------------- 300 (565)
Q Consensus 286 ------~~~~~~~i~~~~~~~----------------------------------------------------------- 300 (565)
.......+...+...
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 001111111111110
Q ss_pred ---------------------------------------------------------CcEEEEEeecChHHHHHHHHHcC
Q 008430 301 ---------------------------------------------------------HQTLLFSATMPVEIEALAQEYLT 323 (565)
Q Consensus 301 ---------------------------------------------------------~~~l~~SAT~~~~~~~~~~~~~~ 323 (565)
..+.|||+|....-.++...|-.
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l 382 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL 382 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC
Confidence 03445566654433333332322
Q ss_pred CCeEEEeCCcCCCCC-ceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCcee
Q 008430 324 DPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 402 (565)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~ 402 (565)
+.+. +.. ..+.. .-.....+.....|...+++.+...... +.|+||-|.|++..+.+++.|.+.|++..
T Consensus 383 ~vv~--IPt-nkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~-------grPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 383 EVVC--IPT-HRPMLRKDLPDLIYKDELSKWRAIADECLQMHQT-------GRPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred CEEE--CCC-CCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhc-------CCCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 1111 111 11111 1111233445566777777776554432 33699999999999999999999999999
Q ss_pred EecCCCC--HHHHHHHHHHhhcCC-ceEEEEcCcccCCCCc
Q 008430 403 ALHGGRN--QSDRESALRDFRNGS-TNILVATDVASRGLDV 440 (565)
Q Consensus 403 ~~~~~~~--~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidi 440 (565)
.+++... ..+-.-+-+ .|. -.|.|||+|++||.||
T Consensus 453 vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 453 LLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred eeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCe
Confidence 9998642 233332222 343 3599999999999998
No 135
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=2.4e-20 Score=180.05 Aligned_cols=307 Identities=17% Similarity=0.156 Sum_probs=200.2
Q ss_pred CCCCHHHHHHHHhHhC-C--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~-g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..++|||+.++..+.. | +..+|+.|+|+|||++-+- +...+ .+++|+++...--+.||...|+.|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT-Aa~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT-AACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee-eeeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4789999999999973 3 4689999999999998633 22222 4569999999999999999999997
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC--------CCCCCCceEEEecchhHhhcCCCHHHH
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~--------~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
... .-.++.++.+... ....++.|+|+|+.++..--++. .+.-..++++|+||+|.+. +..+
T Consensus 370 ti~-d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP----A~MF 439 (776)
T KOG1123|consen 370 TIQ-DDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP----AKMF 439 (776)
T ss_pred ccC-ccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch----HHHH
Confidence 543 3455666655321 24567999999999884221111 1223469999999999876 4555
Q ss_pred HHHHHhCCCCCcEEEEEeecChHHHHHHHH-HcCCCeEEEeCCcC----C-----------------------CCCceEE
Q 008430 291 REVMQNLPDKHQTLLFSATMPVEIEALAQE-YLTDPVQVKVGKVS----S-----------------------PTANVIQ 342 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~~----~-----------------------~~~~~~~ 342 (565)
++++......+ .||+|||+-++...+... ++..|..+...-.+ . .......
T Consensus 440 RRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 440 RRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 66665555555 699999995543322211 11111111110000 0 0001111
Q ss_pred EEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhc
Q 008430 343 ILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN 422 (565)
Q Consensus 343 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 422 (565)
.+.++-...|.... +.|.+.... .+.++|||...+-...+.+-.|. --.++|.+++.+|..+++.|+-
T Consensus 519 ~lLyvMNP~KFraC-qfLI~~HE~------RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 519 MLLYVMNPNKFRAC-QFLIKFHER------RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred heeeecCcchhHHH-HHHHHHHHh------cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhccc
Confidence 22222333343333 333333222 23469999988766555555442 3468899999999999999986
Q ss_pred -CCceEEEEcCcccCCCCccCccEEEEcCCC-CCcccceecccccccCCC------ceeEEEEecccc
Q 008430 423 -GSTNILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGS------MGQATSFYTDRD 482 (565)
Q Consensus 423 -g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~ 482 (565)
..++.++...+....+|+|..+++|+.... .|...-.||+||..|+.+ ....+.+++.+-
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 578999999999999999999999987664 356677899999999643 133455555543
No 136
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.6e-17 Score=174.75 Aligned_cols=128 Identities=21% Similarity=0.288 Sum_probs=102.4
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.-+--.+..|+ |..+.||-|||+++.+|+....+. |+.|-||+++..||..-++++..++..+
T Consensus 84 ~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 368888888877776665 899999999999999999877664 6679999999999999999999998887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhh
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML 282 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~ 282 (565)
++.++++.++....+... ...|||+++|...| +++|..+ ......+.+.||||+|.++
T Consensus 154 -GLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred -CCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 799999888776655443 45699999999988 3443322 2335678999999999654
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=4e-17 Score=178.71 Aligned_cols=331 Identities=19% Similarity=0.206 Sum_probs=196.2
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH-HHHHHH
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKAL 217 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~-~~~~~~ 217 (565)
++++-|.+....+. .++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+. +.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 68999999665543 567799999999999999999987642 2567999999999999994 555555
Q ss_pred hhcCCCceEEEEECCCCHH---HH--------------------------------------------------------
Q 008430 218 SRSLDSFKTAIVVGGTNIA---EQ-------------------------------------------------------- 238 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~---~~-------------------------------------------------------- 238 (565)
.... ++.+..+.|+.+.- ..
T Consensus 316 ~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 316 QEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 4433 45565555543210 00
Q ss_pred ------------HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-----CH-------HH-----
Q 008430 239 ------------RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-------PQ----- 289 (565)
Q Consensus 239 ------------~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-----~~-------~~----- 289 (565)
.......++|||+....|+..+.... .+...+++||||||++.+.. .. ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 00012357799999988877664433 25678999999999875311 00 00
Q ss_pred --------------------------------------H------------------HHHHHh-----------------
Q 008430 290 --------------------------------------I------------------REVMQN----------------- 296 (565)
Q Consensus 290 --------------------------------------~------------------~~i~~~----------------- 296 (565)
+ ..++..
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 0 000000
Q ss_pred ----------------CCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEE--Eecc------chH
Q 008430 297 ----------------LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE--KVSE------NEK 352 (565)
Q Consensus 297 ----------------~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~k 352 (565)
++....+|++|||+...-.......++-........ ......-...+. .++. ...
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~-~~~~~~~~~~~i~~~~p~~~~~~~~~~ 632 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKI-EKDKKQDQLVVVDQDMPLVTETSDEVY 632 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecC-CCChHHccEEEeCCCCCCCCCCChHHH
Confidence 000124677888885211001222222111000000 001111011110 1121 122
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
...+.+.+.... ...+++||+++|.+..+.+++.|....+.+ ...|... .+..++++|++++-.||++|+
T Consensus 633 ~~~~~~~i~~~~-------~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 633 AEEIAKRLEELK-------QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHHHHH-------hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 234444443322 123469999999999999999997665544 3334222 356789999999889999999
Q ss_pred cccCCCCccC--ccEEEEcCCCCC------------------------------cccceecccccccCCCceeEEEEecc
Q 008430 433 VASRGLDVMG--VAHVVNLDLPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 433 ~~~~Gidip~--v~~Vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~ 480 (565)
.+.+|||+|. ...||+...|.. ...+.|.+||.-|...+--++++++.
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 9999999984 556677665531 22248999999998765446667766
Q ss_pred c--cHHHHHHHHHHHHh
Q 008430 481 R--DMLLVAQIKKAIVD 495 (565)
Q Consensus 481 ~--~~~~~~~l~~~~~~ 495 (565)
+ ...+-+.+.+.+..
T Consensus 783 R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 783 RILTKSYGKQILASLAE 799 (820)
T ss_pred cccccHHHHHHHHhCCC
Confidence 5 33455555555543
No 138
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.78 E-value=4.4e-18 Score=170.54 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=97.2
Q ss_pred CCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCcccCCCCccCccEEEEcC
Q 008430 372 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 372 ~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidip~v~~Vi~~~ 450 (565)
..++++|+|++-.+..+.+.++|..+++....++|.....+|..+++.|+..++ -+|++|.+.+-|||+...++||+||
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYd 1121 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYD 1121 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEec
Confidence 345679999999999999999999999999999999999999999999998776 4678999999999999999999999
Q ss_pred CCCCcccceecccccccCCCceeEEEE
Q 008430 451 LPKTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 451 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 477 (565)
..|++..-.|...||+|.|+...|.++
T Consensus 1122 SDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1122 SDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCCcchhhHHHHHHHhccCccceeee
Confidence 999999999999999999997665544
No 139
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=175.31 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCC--ceEE
Q 008430 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS--TNIL 428 (565)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vL 428 (565)
.|+..|.-+|.+... .++++|||....+..+-|..+|+-+|+..+.++|...-++|+.++++|..+. .++|
T Consensus 1260 GKLQtLAiLLqQLk~-------eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfI 1332 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKS-------EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFI 1332 (1958)
T ss_pred chHHHHHHHHHHHHh-------cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEE
Confidence 455555555544433 3457999999999999999999999999999999999999999999999865 4788
Q ss_pred EEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccH
Q 008430 429 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 483 (565)
++|...+.|||+-+.++||+||..|++..-.|.-.|+.|.|+...+.+|-.-.+.
T Consensus 1333 LSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1333 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred EeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999999999999999999999999998777766544433
No 140
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.7e-18 Score=169.74 Aligned_cols=341 Identities=14% Similarity=0.080 Sum_probs=225.4
Q ss_pred HHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 136 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
++.+.-...+.+|.+++..+.+|+++++.-.|.+||.++|.+......... .....+++.|+.++++...+-+.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCceE
Confidence 344555667899999999999999999999999999999988777655443 24458999999999886554433
Q ss_pred HHhhcCCCce--EEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC----CCCCCceEEEecchhHhhcCC---C
Q 008430 216 ALSRSLDSFK--TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMG---F 286 (565)
Q Consensus 216 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~----~~~~~~~~iIiDE~H~~~~~~---~ 286 (565)
-.+...+..+ ++-.+.+....+.....+.+.+++++.|.+......-+. .++-...+++.||+|...... .
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 2222221111 222334444444445566789999999998865544332 233456789999999654221 1
Q ss_pred HHHHHHHHHhC-----CCCCcEEEEEeecChHHHHHHHHHcC-CCeEEEeCCcCCCCCceEEEEEEec---------cch
Q 008430 287 EPQIREVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVS---------ENE 351 (565)
Q Consensus 287 ~~~~~~i~~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 351 (565)
...++++++.. ..+.|++-.+||.....+. .+.+++ +.+...... ..+ ......+..-+ ...
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~D-GSP-s~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTID-GSP-SSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEec-CCC-CccceEEEeCCCCCCcchhhhhh
Confidence 22334443322 2357888889998666553 333333 222222211 122 12222222211 122
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc----CC----ceeEecCCCCHHHHHHHHHHhhcC
Q 008430 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNG 423 (565)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g 423 (565)
++......+.+.... +-++|.||.+++-|+.+....++. +- .+..+.|+...++|..+...+--|
T Consensus 510 ~i~E~s~~~~~~i~~-------~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQH-------GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred HHHHHHHHHHHHHHc-------CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 333333333333322 235999999999998887766543 21 355678999999999999999999
Q ss_pred CceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec--cccHHHHHHHHHH
Q 008430 424 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT--DRDMLLVAQIKKA 492 (565)
Q Consensus 424 ~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~--~~~~~~~~~l~~~ 492 (565)
++.-+|+|.+++-||||..++.|++.++|.|...+.|+.|||||..+...++.+.. +-|..++..-...
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l 653 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKL 653 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHH
Confidence 99999999999999999999999999999999999999999999988876665554 3465555544333
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=6e-18 Score=145.12 Aligned_cols=120 Identities=43% Similarity=0.663 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEE
Q 008430 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
.+...+...+..... ..+++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|.+|...+|++
T Consensus 12 ~k~~~i~~~i~~~~~-------~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 12 EKLEALLELLKEHLK-------KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVA 84 (131)
T ss_pred HHHHHHHHHHHhccc-------CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 566666665554321 2346999999999999999999998999999999999999999999999999999999
Q ss_pred cCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEE
Q 008430 431 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 477 (565)
|.++++|+|+|.+++||+++++++...|+|++||++|.|+.|.++++
T Consensus 85 t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 85 TDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999998888764
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=7e-18 Score=165.51 Aligned_cols=268 Identities=20% Similarity=0.214 Sum_probs=179.1
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
++-+|||.||||+-+ ++++.. .+..+|.-|.+-||.++++++++. ++.+.+++|.+.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~--------aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN 256 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh--------hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC
Confidence 566999999999865 344433 345899999999999999998885 677888888765433211
Q ss_pred HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CCCCcEEEEEeecChHHHHHHH
Q 008430 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 241 ~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
...+..+=||.|+.. . -..+++.||||.+.|.+.+.+..+.+.+--+ .....+.| -.--.++-..+.
T Consensus 257 --~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG--epsvldlV~~i~ 324 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG--EPSVLDLVRKIL 324 (700)
T ss_pred --CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC--CchHHHHHHHHH
Confidence 123778899998875 2 2258999999999999887766665543333 22222222 111112222222
Q ss_pred HHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCC
Q 008430 320 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~ 399 (565)
...++.+.+.... .+..-.-.+.++..+. ...++.. |.|-+++..-.+...+.+.|.
T Consensus 325 k~TGd~vev~~Ye-------------Rl~pL~v~~~~~~sl~--------nlk~GDC--vV~FSkk~I~~~k~kIE~~g~ 381 (700)
T KOG0953|consen 325 KMTGDDVEVREYE-------------RLSPLVVEETALGSLS--------NLKPGDC--VVAFSKKDIFTVKKKIEKAGN 381 (700)
T ss_pred hhcCCeeEEEeec-------------ccCcceehhhhhhhhc--------cCCCCCe--EEEeehhhHHHHHHHHHHhcC
Confidence 2333333332221 1111000111111111 1123332 345578888999999999877
Q ss_pred c-eeEecCCCCHHHHHHHHHHhhc--CCceEEEEcCcccCCCCccCccEEEEcCCC---------CCcccceeccccccc
Q 008430 400 H-AVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLP---------KTVEDYVHRIGRTGR 467 (565)
Q Consensus 400 ~-~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~---------~s~~~~~Q~~GR~~R 467 (565)
. +++++|+++++.|.+.-..|.+ ++++||||||++++|+|+ +++.||+++.. .+.....|.+|||||
T Consensus 382 ~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 382 HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred cceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccc
Confidence 6 9999999999999999999998 899999999999999998 59999998764 245567999999999
Q ss_pred CCC---ceeEEEEeccc
Q 008430 468 GGS---MGQATSFYTDR 481 (565)
Q Consensus 468 ~g~---~g~~~~~~~~~ 481 (565)
.|. .|.+.++..++
T Consensus 461 f~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 461 FGSKYPQGEVTTLHSED 477 (700)
T ss_pred cccCCcCceEEEeeHhh
Confidence 874 47777776543
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=4.2e-16 Score=173.92 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=87.8
Q ss_pred CeEEEEecccchHHHHHHHHHHcCC--ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccC--ccEEEEcC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--VAHVVNLD 450 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~--v~~Vi~~~ 450 (565)
+++|||++|.+..+.+++.|..... ....+.-+++...|..++++|++++-.||++|..+.+|||+|+ +.+||+.+
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 4699999999999999999976432 1222333444456899999999998889999999999999997 57888877
Q ss_pred CCCC------------------------------cccceecccccccCCCceeEEEEeccc--cHHHHHHHHHHH
Q 008430 451 LPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTDR--DMLLVAQIKKAI 493 (565)
Q Consensus 451 ~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~~ 493 (565)
.|.. ...+.|.+||.-|...+.-++++++.+ ...+-+.+.+.+
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 6641 122389999999988765567777766 444555555554
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.75 E-value=9.3e-18 Score=153.15 Aligned_cols=153 Identities=21% Similarity=0.248 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHhHhC-------CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 143 RPTSIQAQAMPVALS-------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~-------g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
+|+++|.+++..+.. .+++++.+|||+|||++++. ++..+.. +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~-~~~~l~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALA-LILELAR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH-HHHHHHC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhh-hhhcccc----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999883 57899999999999999854 3333332 59999999999999999997
Q ss_pred HHhhcCCCceEE----------EEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC-----------CCCCCceEEE
Q 008430 216 ALSRSLDSFKTA----------IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-----------TSLSRVSFVI 274 (565)
Q Consensus 216 ~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~-----------~~~~~~~~iI 274 (565)
.+.......... ...................+++++|.+.|........ .....+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665431100000 0001111112222334568899999999987765321 2345689999
Q ss_pred ecchhHhhcCCCHHH-HHHHHHhCCCCCcEEEEEeecCh
Q 008430 275 LDEADRMLDMGFEPQ-IREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 275 iDE~H~~~~~~~~~~-~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
+||||++. ... +..++. + +...+|+|||||.+
T Consensus 152 ~DEaH~~~----~~~~~~~i~~-~-~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYP----SDSSYREIIE-F-KAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTH----HHHHHHHHHH-S-SCCEEEEEESS-S-
T ss_pred EehhhhcC----CHHHHHHHHc-C-CCCeEEEEEeCccC
Confidence 99999987 333 667766 3 34559999999963
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=9.3e-17 Score=139.57 Aligned_cols=144 Identities=44% Similarity=0.636 Sum_probs=110.4
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+++++.++||+|||.+++..+....... ..++++|++|+..++.|+.+.+...... ...+..+.++......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHH
Confidence 3689999999999999866655544331 3567999999999999999999988753 4667777777666655
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
........+|+++|++.+.............+++|||||+|.+....................+++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 555567899999999999888877655666799999999999886654433222344445667899999997
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=8.9e-18 Score=174.99 Aligned_cols=319 Identities=16% Similarity=0.192 Sum_probs=210.6
Q ss_pred CCCCHHHHHHHHhHh---CCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVAL---SGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~---~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.++.+||...+.++. +++ +.|++..||.|||... +.++.++++.... .|| .|||||+..|.. |..+|..|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~---~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQM---QGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHccc---CCC-eEEeccccccCC-chhhcccc
Confidence 378999999999876 333 6899999999999876 7777777775322 344 699999987765 99999999
Q ss_pred hhcCCCceEEEEECCCCHHH--HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHH
Q 008430 218 SRSLDSFKTAIVVGGTNIAE--QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
.. .+..+.+.|...... ......++++|+++|++.+..-- ..+.--++.|+||||.|+|.+. .-.+...+.
T Consensus 467 aP---Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk--~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~ 539 (1157)
T KOG0386|consen 467 AP---SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDK--ALLSKISWKYMIIDEGHRMKNA--ICKLTDTLN 539 (1157)
T ss_pred cc---ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCH--HHHhccCCcceeecccccccch--hhHHHHHhh
Confidence 74 455666655543322 22233477999999999885411 1122225789999999999764 222333333
Q ss_pred -hCCCCCcEEEEEeecChH----HHHH--------------HHHHcCCCeEE----------------------------
Q 008430 296 -NLPDKHQTLLFSATMPVE----IEAL--------------AQEYLTDPVQV---------------------------- 328 (565)
Q Consensus 296 -~~~~~~~~l~~SAT~~~~----~~~~--------------~~~~~~~~~~~---------------------------- 328 (565)
+..... -+++|+||--+ +..+ +..|+..|+.-
T Consensus 540 t~y~~q~-RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 540 THYRAQR-RLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred ccccchh-hhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 333222 46677777100 0000 00111111000
Q ss_pred ----------------------------------------EeCC--cCCCCC-------------ceEEEE----EEe--
Q 008430 329 ----------------------------------------KVGK--VSSPTA-------------NVIQIL----EKV-- 347 (565)
Q Consensus 329 ----------------------------------------~~~~--~~~~~~-------------~~~~~~----~~~-- 347 (565)
.... ...... +....+ ..+
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~ 698 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL 698 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccc
Confidence 0000 000000 000000 000
Q ss_pred --------ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHH
Q 008430 348 --------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 348 --------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
....|..-+-..+.+. ...++++|.||.......-|.++|.-.++....++|.+..++|...++.
T Consensus 699 ~~~~~dL~R~sGKfELLDRiLPKL-------katgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 699 HYDIKDLVRVSGKFELLDRILPKL-------KATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred ccChhHHHHhccHHHHHHhhhHHH-------HhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 0111211111222211 2345679999999999999999999999999999999999999999999
Q ss_pred hhcCCc---eEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc
Q 008430 420 FRNGST---NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 420 f~~g~~---~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|..-.. .+|++|.+.+.|+|+...++||.||..|++..+.|+-.||.|.|+...|-++....
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 988543 57889999999999999999999999999999999999999999988887776554
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=3.2e-18 Score=131.96 Aligned_cols=78 Identities=36% Similarity=0.703 Sum_probs=75.7
Q ss_pred HHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCC
Q 008430 392 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g 469 (565)
++|+..++.+..+||+++.++|..+++.|++++..|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.73 E-value=1.1e-16 Score=154.88 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=94.7
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC-CceE-EEEcCcccCCCCccCccEEEEcCCC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNI-LVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
.+.|||.+-....+.+.-.|.+.|+.|+-+.|+|++..|...++.|.+. .++| |++-.+.+..+|+....+|+++||-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 3589999999999999999999999999999999999999999999986 5555 4566788888999999999999999
Q ss_pred CCcccceecccccccCCC--ceeEEEEecccc
Q 008430 453 KTVEDYVHRIGRTGRGGS--MGQATSFYTDRD 482 (565)
Q Consensus 453 ~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~ 482 (565)
|++..-.|...|.+|.|+ +-.++.|+.+..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 999999999999999997 456666665543
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=4.8e-15 Score=155.18 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=76.7
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhc----CCceEEEEcCcccCCCCc--------c-
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN----GSTNILVATDVASRGLDV--------M- 441 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLv~T~~~~~Gidi--------p- 441 (565)
++++|.+.|....+.+++.|...---.+.+.|..+ .+..++++|++ |+-.||++|+.+.+|||+ |
T Consensus 471 G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G 548 (636)
T TIGR03117 471 GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKD 548 (636)
T ss_pred CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCC
Confidence 46999999999999999999764223344555432 45678888887 478899999999999999 2
Q ss_pred -CccEEEEcCCCCC-------------------------cccceecccccccCCCc--eeEEEEeccc
Q 008430 442 -GVAHVVNLDLPKT-------------------------VEDYVHRIGRTGRGGSM--GQATSFYTDR 481 (565)
Q Consensus 442 -~v~~Vi~~~~~~s-------------------------~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 481 (565)
.+++||+...|.. ...+.|-+||.-|.... --++.+++++
T Consensus 549 ~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 549 NLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3889998777732 22347889999997665 4455555555
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=2e-15 Score=160.82 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=105.2
Q ss_pred EEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCC
Q 008430 345 EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (565)
Q Consensus 345 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 424 (565)
.+....+|...+++.+...... +.|+||-|.|++..+.|++.|...|++.-++++.....+-+-+-+.-+.|
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~-------GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G- 677 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEA-------GRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG- 677 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHC-------CCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC-
Confidence 3445567788888887766543 33699999999999999999999999988888876555544444443344
Q ss_pred ceEEEEcCcccCCCCcc--------CccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 425 TNILVATDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 425 ~~vLv~T~~~~~Gidip--------~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
.|-|||+|++||.||. +-=+||-...+.|...-.|..||+||.|.+|.+-.|++-+|...
T Consensus 678 -aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 678 -TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred -cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 4899999999999995 22378888899999999999999999999999999998877544
No 151
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=1e-15 Score=162.65 Aligned_cols=319 Identities=19% Similarity=0.232 Sum_probs=211.7
Q ss_pred CCHHHHHHHHhHhCCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 144 PTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.+++|.++++.+.+.+ ++++.+|+|||||.++.++++. +....++++++|..+++...+..+.+.+....
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3899999999998665 6999999999999999887665 12467799999999999999998888887777
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHH------HHHHHHHh
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP------QIREVMQN 296 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~------~~~~i~~~ 296 (565)
+..+..++|.....-. +....+|+|+||+++..+ . ....+++.|.||.|.+++. ++. .++.|-..
T Consensus 1215 G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred CceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHH
Confidence 8888888887765543 334578999999999655 2 4557899999999988732 222 25566666
Q ss_pred CCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCe
Q 008430 297 LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 297 ~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
+.++.+++++|..+...-. . .++...-.+.+.....+.+...+ +..+..............-......+......+
T Consensus 1286 ~~k~ir~v~ls~~lana~d-~--ig~s~~~v~Nf~p~~R~~Pl~i~-i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANARD-L--IGASSSGVFNFSPSVRPVPLEIH-IQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccchh-h--ccccccceeecCcccCCCceeEE-EEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 6677889999888743211 1 11111122222222222222222 222222211111111111111111111234457
Q ss_pred EEEEecccchHHHHHHHHHH----------------------cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 377 TIVFVERKTRCDEVSEALVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
++||++++++|..++..|-. ..+++.+-|-+++..+...+...|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 99999999999777665421 1122333388999999999999999999999987766
Q ss_pred cCCCCccCccEEEE-----cCC------CCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 435 SRGLDVMGVAHVVN-----LDL------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 435 ~~Gidip~v~~Vi~-----~~~------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
..|+-.. .+.|+. ||- +.+.....|+.|+|.| .|.|++++..++..+++++
T Consensus 1441 ~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 7777764 344443 322 2356777999999998 5789999999888777654
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.64 E-value=5.3e-15 Score=149.06 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=95.8
Q ss_pred eEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhc--CCceEE-EEcCcccCCCCccCccEEEEcCCC
Q 008430 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNIL-VATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vL-v~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
+++|...-.....-+...+...|.....+||....++|+.+++.|.. |..+|+ ++-.+.+.|+|+-..+|+|++|.-
T Consensus 748 K~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH 827 (901)
T KOG4439|consen 748 KVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH 827 (901)
T ss_pred eeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc
Confidence 47777777777788889999999999999999999999999999975 445555 555788999999999999999999
Q ss_pred CCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 453 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 453 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
|++..-.|...|..|.|++..|++.-.........++
T Consensus 828 WNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV 864 (901)
T KOG4439|consen 828 WNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRV 864 (901)
T ss_pred cCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHH
Confidence 9999999999999999999999877544433333343
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.64 E-value=2.4e-13 Score=147.28 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=81.3
Q ss_pred eEEEEecccchHHHHHHHHHHc-CCceeEecCCCCHHHHHHHHHHhh----cCCceEEEEcCcccCCCCccC--ccEEEE
Q 008430 376 LTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFR----NGSTNILVATDVASRGLDVMG--VAHVVN 448 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~~~~~Gidip~--v~~Vi~ 448 (565)
.+|||++|.+..+.+++.|... +.. +..+|. ..+..+++.|+ .|+-.||++|..+.+|||+|+ +++||+
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII 611 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVII 611 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEE
Confidence 3899999999999999998753 333 344553 24677887776 467789999999999999997 788998
Q ss_pred cCCCCC-c-----------------------------ccceecccccccCCCceeEEEEeccc--cHHHHHHHHHHH
Q 008430 449 LDLPKT-V-----------------------------EDYVHRIGRTGRGGSMGQATSFYTDR--DMLLVAQIKKAI 493 (565)
Q Consensus 449 ~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~~ 493 (565)
...|.. + ..+.|.+||.-|...+--++++++.+ ...+-+.+.+.+
T Consensus 612 ~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 612 TKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 886642 1 12378999999987655566677665 333444444433
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=3.9e-14 Score=154.67 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=84.1
Q ss_pred eEEEEecccchHHHHHHHHHHcCCc-eeEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCcccCCCCccC--ccEEEEcCC
Q 008430 376 LTIVFVERKTRCDEVSEALVAEGLH-AVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMG--VAHVVNLDL 451 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidip~--v~~Vi~~~~ 451 (565)
++|||++|.+.++.+.+.+...... ....+|.. .+..+++.|+.+.- -++|+|..+.+|||+|+ ..+||+.+.
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 5999999999999999999887653 34445544 34478888887544 89999999999999997 577888777
Q ss_pred CC------------------------------CcccceecccccccCCCceeEEEEeccccH--HHHHHHHHHHH
Q 008430 452 PK------------------------------TVEDYVHRIGRTGRGGSMGQATSFYTDRDM--LLVAQIKKAIV 494 (565)
Q Consensus 452 ~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~--~~~~~l~~~~~ 494 (565)
|. -...+.|.+||+-|...+.-++++++.+=. .+-+.+.+.+.
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCC
Confidence 64 122338999999997766666667766522 23444444443
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=1.5e-15 Score=118.48 Aligned_cols=81 Identities=49% Similarity=0.811 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccC
Q 008430 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 389 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~ 468 (565)
.+++.|...++.+..+||+++.++|..+++.|++|+..|||+|+++++|+|+|.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008430 469 G 469 (565)
Q Consensus 469 g 469 (565)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=1e-12 Score=143.52 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCCCCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 140 EYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
.|..++|.|.+.+..+. .++++++.+|||+|||++.+.+++.+....+ ..++++|.+.|..=..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 45667999998887665 6788999999999999999999998766432 24689999999999999999999
Q ss_pred HH
Q 008430 216 AL 217 (565)
Q Consensus 216 ~~ 217 (565)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 85
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.56 E-value=2.7e-13 Score=145.52 Aligned_cols=339 Identities=19% Similarity=0.142 Sum_probs=191.7
Q ss_pred HHHHHCCCCCCCHHHHHHHHhHhC--------CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 134 KDIEFHEYTRPTSIQAQAMPVALS--------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~l~~l~~--------g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
+.+.+..-..-..+|-.|+..+.. |-=++-.|.||+|||++= .-++..+.. ...|.|..|-.-.|.
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd-----~~~g~RfsiALGLRT 472 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD-----DKQGARFAIALGLRS 472 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC-----CCCCceEEEEccccc
Confidence 334333334567899999998763 112566899999999874 334433332 224678888889999
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH-------------------------------------------HH
Q 008430 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS-------------------------------------------EL 242 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------------------------------~~ 242 (565)
|..|.-+.+++.++-. +-...+++|+....+..+ .+
T Consensus 473 LTLQTGda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l 551 (1110)
T TIGR02562 473 LTLQTGHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRL 551 (1110)
T ss_pred eeccchHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhh
Confidence 9999999988887542 344555555433221110 00
Q ss_pred h--------CCCcEEEEccHHHHHHHHc--C-CCCCC----CceEEEecchhHhhcCCCHHHHHHHH---HhCCCCCcEE
Q 008430 243 R--------GGVSIVVATPGRFLDHLQQ--G-NTSLS----RVSFVILDEADRMLDMGFEPQIREVM---QNLPDKHQTL 304 (565)
Q Consensus 243 ~--------~~~~ilv~T~~~l~~~l~~--~-~~~~~----~~~~iIiDE~H~~~~~~~~~~~~~i~---~~~~~~~~~l 304 (565)
. -...|+|||++.++..... . ...+. .=+.|||||+|.+-... ...+.+++ ..+ ...++
T Consensus 552 ~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~l--G~~Vl 628 (1110)
T TIGR02562 552 SLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLL--GSRVL 628 (1110)
T ss_pred ccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHc--CCCEE
Confidence 0 1256999999999766522 1 11111 13579999999543211 22233333 333 45699
Q ss_pred EEEeecChHHHHHHHHH-----------cC---CCeEEEeC---CcCC----------------------------CCCc
Q 008430 305 LFSATMPVEIEALAQEY-----------LT---DPVQVKVG---KVSS----------------------------PTAN 339 (565)
Q Consensus 305 ~~SAT~~~~~~~~~~~~-----------~~---~~~~~~~~---~~~~----------------------------~~~~ 339 (565)
+||||+|..+...+..- .+ .+..+... .... .+..
T Consensus 629 LmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~ 708 (1110)
T TIGR02562 629 LSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVR 708 (1110)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999998875543321 12 11211110 0000 0000
Q ss_pred eEEEEEEeccc-----hHHHHHHHHHHHH----HHhhhhcCC-CCCe---EEEEecccchHHHHHHHHHHc------CCc
Q 008430 340 VIQILEKVSEN-----EKVDRLLALLVEE----AFLAEKSCH-PFPL---TIVFVERKTRCDEVSEALVAE------GLH 400 (565)
Q Consensus 340 ~~~~~~~~~~~-----~k~~~l~~~l~~~----~~~~~~~~~-~~~~---~liF~~s~~~a~~l~~~l~~~------~~~ 400 (565)
..-.+..+... .....+.+.+.+. ......... .+++ +||-.++++.+-.++..|-.. .+.
T Consensus 709 R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~ 788 (1110)
T TIGR02562 709 RLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIH 788 (1110)
T ss_pred ceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCcee
Confidence 11111111111 1222222222221 111111111 1112 688888888888888888654 345
Q ss_pred eeEecCCCCHHHHHHHHHHh----------------------hc----CCceEEEEcCcccCCCCccCccEEEEcCCCCC
Q 008430 401 AVALHGGRNQSDRESALRDF----------------------RN----GSTNILVATDVASRGLDVMGVAHVVNLDLPKT 454 (565)
Q Consensus 401 ~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s 454 (565)
+..+|+......|..+.+.+ .+ +...|+|+|++++.|+|+ +.+.+|- -+.+
T Consensus 789 ~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~ 865 (1110)
T TIGR02562 789 LCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSS 865 (1110)
T ss_pred EEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCc
Confidence 78899998877777665543 12 467899999999999998 3555543 3456
Q ss_pred cccceecccccccCCCc--eeEEEEeccccHHH
Q 008430 455 VEDYVHRIGRTGRGGSM--GQATSFYTDRDMLL 485 (565)
Q Consensus 455 ~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~ 485 (565)
....+|++||+.|.|.. +...+++...+...
T Consensus 866 ~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~ 898 (1110)
T TIGR02562 866 MRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRY 898 (1110)
T ss_pred HHHHHHHhhcccccccCCCCCCcEEEeHhHHHH
Confidence 88899999999998753 33334444444333
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=3.8e-13 Score=152.89 Aligned_cols=324 Identities=19% Similarity=0.200 Sum_probs=206.8
Q ss_pred CCCCHHHHHHHHhHh-----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~-----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
..++++|.+.++++. .+.+.+++..+|.|||+.. +..+......... ..+.+|+++|. +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~-i~~l~~~~~~~~~---~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQT-IALLLSLLESIKV---YLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHH-HHHHHhhhhcccC---CCCCeEEEecH-HHHHHHHHHHhh
Confidence 467899999998865 2557888999999999887 4444433332211 13569999996 688889999988
Q ss_pred HhhcCCCce-EEEEECCCCH----HHHHHHHhC-----CCcEEEEccHHHHHHH-HcCCCCCCCceEEEecchhHhhcCC
Q 008430 217 LSRSLDSFK-TAIVVGGTNI----AEQRSELRG-----GVSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 217 ~~~~~~~~~-~~~~~g~~~~----~~~~~~~~~-----~~~ilv~T~~~l~~~l-~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+... +. +....|.... .+....+.. ..+++++|++.+.... ....+.-..++++|+||+|++.+..
T Consensus 412 ~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 412 FAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred hCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 8754 44 5566665541 233322222 2799999999997632 1122444568999999999976543
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeec-ChHHHHH---HH-H---------------HcCCCeEEEeC--------------
Q 008430 286 FEPQIREVMQNLPDKHQTLLFSATM-PVEIEAL---AQ-E---------------YLTDPVQVKVG-------------- 331 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~-~~~~~~~---~~-~---------------~~~~~~~~~~~-------------- 331 (565)
......+. .+.... .+++|+|| ...+.++ .. - ++..+......
T Consensus 489 -s~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 489 -SSEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred -hHHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 22223332 343333 36777777 1111110 00 0 00000000000
Q ss_pred -C------cCCCCCc-----------------------------------------------------------------
Q 008430 332 -K------VSSPTAN----------------------------------------------------------------- 339 (565)
Q Consensus 332 -~------~~~~~~~----------------------------------------------------------------- 339 (565)
. .......
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 0 0000000
Q ss_pred -----eEEEEEEeccc------------------------------hHHHHHHHHHHHHHHhhhhcCCCCC--eEEEEec
Q 008430 340 -----VIQILEKVSEN------------------------------EKVDRLLALLVEEAFLAEKSCHPFP--LTIVFVE 382 (565)
Q Consensus 340 -----~~~~~~~~~~~------------------------------~k~~~l~~~l~~~~~~~~~~~~~~~--~~liF~~ 382 (565)
+......+... .+...+.+.+. ......+. ++|+|++
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~------~~~~~~~~~~kvlifsq 719 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLL------DKLLEEGHYHKVLIFSQ 719 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHH------HHHHhhcccccEEEEeC
Confidence 00000000000 22333333331 01112233 7999999
Q ss_pred ccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC--CceEEEEcCcccCCCCccCccEEEEcCCCCCccccee
Q 008430 383 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVH 460 (565)
Q Consensus 383 s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q 460 (565)
.....+.+...|...++....++|.++...|...++.|.++ ...+++++.+.+.|+|+-..++||++|+.|++....|
T Consensus 720 ~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Q 799 (866)
T COG0553 720 FTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQ 799 (866)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999986 4567788889999999999999999999999999999
Q ss_pred cccccccCCCceeEEEEecccc
Q 008430 461 RIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 461 ~~GR~~R~g~~g~~~~~~~~~~ 482 (565)
...|+.|.|++..|.++-....
T Consensus 800 a~dRa~RigQ~~~v~v~r~i~~ 821 (866)
T COG0553 800 AIDRAHRIGQKRPVKVYRLITR 821 (866)
T ss_pred HHHHHHHhcCcceeEEEEeecC
Confidence 9999999999877766655443
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.50 E-value=3.5e-12 Score=132.51 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=93.8
Q ss_pred CeEEEEecccchHHHHHHHHHH----------------------cCCceeEecCCCCHHHHHHHHHHhhcCC----ceEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGS----TNIL 428 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vL 428 (565)
.+.|||.++......+..+|.. .|.....++|......|+.+.+.|.+-. ...|
T Consensus 1143 DKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~L 1222 (1567)
T KOG1015|consen 1143 DKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFL 1222 (1567)
T ss_pred ceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEE
Confidence 4699999999999888888854 2456788999999999999999998742 3489
Q ss_pred EEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc
Q 008430 429 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|+|.+.+-|||+-..+.||+||..|++.--+|.+=|+.|.|+...||++-.-.
T Consensus 1223 ISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1223 ISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred EeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 99999999999999999999999999999999999999999999998775443
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.46 E-value=1.1e-11 Score=137.97 Aligned_cols=304 Identities=17% Similarity=0.222 Sum_probs=169.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+..+|+--||||||++. +-+...+... ...+.++|||-++.|-.|..++|..+..... ... ...+....
T Consensus 274 ~~G~IWHtqGSGKTlTm-~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTM-FKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHH-HHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHH
Confidence 46999999999999986 4444445544 2578899999999999999999999875431 111 44455555
Q ss_pred HHHHhCC-CcEEEEccHHHHHHHHcCC--CCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHH
Q 008430 239 RSELRGG-VSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 239 ~~~~~~~-~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 315 (565)
...+... ..|+|||.|+|........ ..-..=-+||+||||+.- ++..-..+...++ +...+|||+||-..-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCcccccc
Confidence 5556544 5899999999987775541 112223368889999854 3333344444444 3669999999943222
Q ss_pred HH-HHHHcCCCeEEEeCCcCCCCCceEEEEEEec-------cc---------hHHH------------------------
Q 008430 316 AL-AQEYLTDPVQVKVGKVSSPTANVIQILEKVS-------EN---------EKVD------------------------ 354 (565)
Q Consensus 316 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------~k~~------------------------ 354 (565)
.. ....++..++............+..+..... .. ....
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 22 1223333333222111111111100000000 00 0000
Q ss_pred -HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCc-----------------------eeEecCCCCH
Q 008430 355 -RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH-----------------------AVALHGGRNQ 410 (565)
Q Consensus 355 -~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~-----------------------~~~~~~~~~~ 410 (565)
.+...................++++.|.++..|..+.+.+...... ....|.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 0001111111111112334456777777777555555443322100 0000111 22
Q ss_pred HHHHHHHHH--hhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCC----ceeEEEEec
Q 008430 411 SDRESALRD--FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS----MGQATSFYT 479 (565)
Q Consensus 411 ~~r~~~~~~--f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~----~g~~~~~~~ 479 (565)
..+.....+ .....+++||.++|+-.|.|.|.++++ .+|-|.-....+|.+.|+.|.-. .|.++.|..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 234444555 345678999999999999999966654 55556777788999999999432 355555554
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.43 E-value=1.7e-11 Score=129.45 Aligned_cols=317 Identities=21% Similarity=0.249 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+.+|.-+--.+..| -+.-+.||-|||+++.+|+.-..+. |..+.+|+...-|+.--.+++.+++..+
T Consensus 80 ~~~dVQliG~i~lh~g--~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~L- 148 (822)
T COG0653 80 RHFDVQLLGGIVLHLG--DIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFL- 148 (822)
T ss_pred ChhhHHHhhhhhhcCC--ceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHc-
Confidence 4555665555555444 5889999999999999998766554 6669999999999999999999998887
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhh-cC----------
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM---------- 284 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~-~~---------- 284 (565)
++.+++...+....+..... .|||..+|-..| ++.+..+ ......+.+.|+||++.++ ++
T Consensus 149 GlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~ 226 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGP 226 (822)
T ss_pred CCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecc
Confidence 79999999998777766555 489999999887 4444332 1223458899999999643 10
Q ss_pred --C---CHHHHHHHHHhCCCC--------CcEEE----------------------------------------------
Q 008430 285 --G---FEPQIREVMQNLPDK--------HQTLL---------------------------------------------- 305 (565)
Q Consensus 285 --~---~~~~~~~i~~~~~~~--------~~~l~---------------------------------------------- 305 (565)
+ ....+..+...+... .+.+.
T Consensus 227 ~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dY 306 (822)
T COG0653 227 AEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDY 306 (822)
T ss_pred cccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCee
Confidence 0 112222222222110 01111
Q ss_pred ---------------------------------------------------------------EEeecChHHHHHHHHHc
Q 008430 306 ---------------------------------------------------------------FSATMPVEIEALAQEYL 322 (565)
Q Consensus 306 ---------------------------------------------------------------~SAT~~~~~~~~~~~~~ 322 (565)
||+|...+-.++..-|.
T Consensus 307 IVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~ 386 (822)
T COG0653 307 IVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYG 386 (822)
T ss_pred EEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccC
Confidence 11111111111111111
Q ss_pred CCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCcee
Q 008430 323 TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 402 (565)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~ 402 (565)
...+.+.... .....-.....+.....|...++..+......+ .|+||-..+++.++.+.+.|.+.|++..
T Consensus 387 l~vv~iPTnr--p~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~g-------qPvLvgT~sie~SE~ls~~L~~~~i~h~ 457 (822)
T COG0653 387 LDVVVIPTNR--PIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKG-------QPVLVGTVSIEKSELLSKLLRKAGIPHN 457 (822)
T ss_pred CceeeccCCC--cccCCCCccccccchHHHHHHHHHHHHHHHhcC-------CCEEEcCcceecchhHHHHHHhcCCCce
Confidence 1000000000 000001111233345667777777777665443 3699999999999999999999999998
Q ss_pred EecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCcc-----------EEEEcCCCCCcccceecccccccCCCc
Q 008430 403 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA-----------HVVNLDLPKTVEDYVHRIGRTGRGGSM 471 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~-----------~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 471 (565)
.+...-...+-+.+-..-+.| -|-|+|.|+++|-||.--. +||-...-.|...-.|.-||+||.|.+
T Consensus 458 VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 458 VLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred eeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 888776644433333322223 4789999999999983222 345555556676678999999999999
Q ss_pred eeEEEEeccccH
Q 008430 472 GQATSFYTDRDM 483 (565)
Q Consensus 472 g~~~~~~~~~~~ 483 (565)
|..-.|++-.|.
T Consensus 536 G~S~F~lSleD~ 547 (822)
T COG0653 536 GSSRFYLSLEDD 547 (822)
T ss_pred chhhhhhhhHHH
Confidence 999888877654
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.43 E-value=3.7e-12 Score=133.54 Aligned_cols=289 Identities=15% Similarity=0.168 Sum_probs=176.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
-.+|.+|+|||||... +..+...+.. .+.++|+|.++++|+.+....|+...-. ++. .+......
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv--~Y~d~~~~---- 115 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS--GFV--NYLDSDDY---- 115 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC--cce--eeeccccc----
Confidence 3689999999999764 4445444322 3677999999999999999999875211 111 11111100
Q ss_pred HHHh-CCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHH-------HHHHHHhCCCCCcEEEEEeecC
Q 008430 240 SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ-------IREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 240 ~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~-------~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.+. ...+-+++..++|.+... ..++++|+|||||+-..+..=|.+. +..+...+.....+|++-|++.
T Consensus 116 -~i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 116 -IIDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -cccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 111 235778888888865432 3456799999999987654322222 2223344455667999999999
Q ss_pred hHHHHHHHHHcCC-CeEEEeCCcCCCCC-ceEEE-EEEec--------------------------------cchHHHHH
Q 008430 312 VEIEALAQEYLTD-PVQVKVGKVSSPTA-NVIQI-LEKVS--------------------------------ENEKVDRL 356 (565)
Q Consensus 312 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~--------------------------------~~~k~~~l 356 (565)
...-+++...... .+.+.......... +.... ...+. ........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9988888876543 33332222111000 00000 00000 00011223
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccC
Q 008430 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
...|......+ ..+-|||.+...++.+++.....+..+..+++..+..+.+ .+ ++.+|++-|.++..
T Consensus 272 ~~~L~~~L~~g-------knIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~W--~~~~VviYT~~itv 338 (824)
T PF02399_consen 272 FSELLARLNAG-------KNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----SW--KKYDVVIYTPVITV 338 (824)
T ss_pred HHHHHHHHhCC-------CcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----cc--cceeEEEEeceEEE
Confidence 33333333332 2488999999999999999998888899998876655322 22 57899999999999
Q ss_pred CCCccCc--cEEEEc-CCC---CCcccceecccccccCCCceeEEEEeccc
Q 008430 437 GLDVMGV--AHVVNL-DLP---KTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 437 Gidip~v--~~Vi~~-~~~---~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|+++-+. +-|..| .+. .+..+..|++||+-.- ...+.+++++..
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 9998643 333333 121 1344578999999655 356777777654
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.40 E-value=1.6e-10 Score=115.47 Aligned_cols=292 Identities=20% Similarity=0.246 Sum_probs=199.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHHHHhhcCCC----------ce---------EEEEECCCCHHHHHHHH-----------
Q 008430 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDS----------FK---------TAIVVGGTNIAEQRSEL----------- 242 (565)
Q Consensus 193 ~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~----------~~---------~~~~~g~~~~~~~~~~~----------- 242 (565)
..|+||||+|++..|.++.+.+.+++..... +. ...-..+....++....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3688999999999999999888887754100 00 00000011122222111
Q ss_pred -------------hCCCcEEEEccHHHHHHHHc------CCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC---CC-
Q 008430 243 -------------RGGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PD- 299 (565)
Q Consensus 243 -------------~~~~~ilv~T~~~l~~~l~~------~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~---~~- 299 (565)
....|||||+|=-|...+.. ..-.++.+.++|||.+|.+.-.+ -..+..++.++ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCC
Confidence 13588999999988776663 22347789999999999776332 22334444443 21
Q ss_pred --------------------CCcEEEEEeecChHHHHHHHHHcCCCeE-EEe--CC-----cCCCCCceEEEEEEeccc-
Q 008430 300 --------------------KHQTLLFSATMPVEIEALAQEYLTDPVQ-VKV--GK-----VSSPTANVIQILEKVSEN- 350 (565)
Q Consensus 300 --------------------~~~~l~~SAT~~~~~~~~~~~~~~~~~~-~~~--~~-----~~~~~~~~~~~~~~~~~~- 350 (565)
-.|.|++|+...+++..+....+.+... +.+ .. .......+.|.+..++..
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2499999999999999888886654322 111 11 123344566777665432
Q ss_pred ------hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCC
Q 008430 351 ------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (565)
Q Consensus 351 ------~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 424 (565)
.+.......+...... ......+|||+++--.--.+..+|++.++..+.+|--++..+...+-..|..|+
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~----~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR----DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh----ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 2333333333222221 234456999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcC--cccCCCCccCccEEEEcCCCCCcccceecccccccCC------CceeEEEEeccccHHHHHHH
Q 008430 425 TNILVATD--VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG------SMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 425 ~~vLv~T~--~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g------~~g~~~~~~~~~~~~~~~~l 489 (565)
..||+.|. -+-+-..|.++.+||+|.+|..+.-|-..++-.+... ....|.++++.-|...+.+|
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999996 4556778899999999999999888866665444332 25789999998887777766
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.38 E-value=3.9e-12 Score=125.67 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=93.8
Q ss_pred HHHHHHHhHh-------------CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHH
Q 008430 147 IQAQAMPVAL-------------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 147 ~Q~~~l~~l~-------------~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
+|.+++..++ ..+.+|++.++|+|||+.+ +.++..+...... .....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5777777763 2346999999999999987 5555555543211 012249999998 888999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHH-----HHHHcCCCCCCCceEEEecchhHhhcCCCHH
Q 008430 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-----DHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~-----~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 288 (565)
+.+++... ...+..+.|...............+++|+|++.+. .... .+..-++++||+||+|.+.+.. ..
T Consensus 77 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~~-s~ 152 (299)
T PF00176_consen 77 IEKWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNKD-SK 152 (299)
T ss_dssp HHHHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTTT-SH
T ss_pred hccccccc-cccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEeccccccccc-cc
Confidence 99998542 35555555554122222223456889999999998 1111 0111349999999999985443 22
Q ss_pred HHHHHHHhCCCCCcEEEEEeecCh
Q 008430 289 QIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 289 ~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
.+. .+..+. ....+++||||-.
T Consensus 153 ~~~-~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 153 RYK-ALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHH-HHHCCC-ECEEEEE-SS-SS
T ss_pred ccc-cccccc-cceEEeecccccc
Confidence 333 334455 4458899999843
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=2.6e-12 Score=106.72 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=80.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+|+--++-..+|+|||.-.+-.++...+. .+.++|+|.||+.++..+.+.++.. .+.+.. .-.. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t--~~~~-~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT--NARM-R 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS-----SEEEES--TTSS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC-----CcccCc--eeee-c
Confidence 34556889999999998765556666665 3788999999999998877766542 222221 1110 0
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC--CHHHHHHHHHhCCCCCcEEEEEeecChHH
Q 008430 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEI 314 (565)
Q Consensus 237 ~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 314 (565)
...++.-|-++|...+.+.+.. .....++++||+||||..-..+ +.-.+... ... ....+|+||||||...
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred ----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 1234567889999999887766 5557789999999999532111 11111111 222 2356999999998653
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.30 E-value=1.5e-09 Score=117.50 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=58.8
Q ss_pred CceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccC-----CCc--e---eEEEEeccccHHHHHHHHHHH
Q 008430 424 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG-----GSM--G---QATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 424 ~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~-----g~~--g---~~~~~~~~~~~~~~~~l~~~~ 493 (565)
.+++|++.+++.+|.|.|++-.+..++...|...-.|.+||+.|. |.. + .-.++++.....++..|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999999999988998999999999993 211 1 233455666778888888887
Q ss_pred Hhh
Q 008430 494 VDA 496 (565)
Q Consensus 494 ~~~ 496 (565)
.+.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.3e-09 Score=107.37 Aligned_cols=344 Identities=19% Similarity=0.236 Sum_probs=217.9
Q ss_pred CCCCCCHHHHHHHHhHhCCCCEEE-EccCCChh--HHHHHHHHHHHHHhcCCC-----------------------CCCC
Q 008430 140 EYTRPTSIQAQAMPVALSGRDLLG-CAETGSGK--TAAFTIPMIQHCVAQTPV-----------------------GRGD 193 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~li-~a~TGsGK--T~~~~l~~l~~~~~~~~~-----------------------~~~~ 193 (565)
.-..+++.|.+.+..+.+-++++. ....+.|+ +.+|++-++.++++.+.. ..-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 345789999999999988888654 33334555 567888899887753210 0012
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCce---------EEEEEC---------------------CCCH--------
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFK---------TAIVVG---------------------GTNI-------- 235 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~---------~~~~~g---------------------~~~~-------- 235 (565)
.|+||||||+++-|..+.+.+..++.+...-+ -+-+.| +++.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 57899999999999999999998854432200 011111 1110
Q ss_pred HHHHHH---HhCCCcEEEEccHHHHHHHHcC------CCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC-------
Q 008430 236 AEQRSE---LRGGVSIVVATPGRFLDHLQQG------NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD------- 299 (565)
Q Consensus 236 ~~~~~~---~~~~~~ilv~T~~~l~~~l~~~------~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~------- 299 (565)
...... .....||+||+|=-|.-++... .-.++.+.++|||-+|.++..++ ..+..|+.++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccC
Confidence 000000 1246899999998886666522 12355688999999998874432 234445554421
Q ss_pred -----------------CCcEEEEEeecChHHHHHHHHHcCCCeEE-EeC------CcCCCCCceEEEEEEe-------c
Q 008430 300 -----------------KHQTLLFSATMPVEIEALAQEYLTDPVQV-KVG------KVSSPTANVIQILEKV-------S 348 (565)
Q Consensus 300 -----------------~~~~l~~SAT~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~-------~ 348 (565)
-.|++++|+--......++..++.+.... ... ........+.+.+..+ .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 12677788777766666666665442221 111 1111111122222211 1
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEE
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
.+.+.......+.-...... ..-+|||.++--.--.+..++++..+..+.+|--.+...-.+.-+.|-.|...||
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t-----~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vl 606 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRT-----ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVL 606 (698)
T ss_pred chHHHHHHHHhhchhhcccc-----cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEE
Confidence 22333444433332222111 1127999999888889999999999988888877777778888889999999999
Q ss_pred EEcC--cccCCCCccCccEEEEcCCCCCcccc---eecccccccCC----CceeEEEEeccccHHHHHHH
Q 008430 429 VATD--VASRGLDVMGVAHVVNLDLPKTVEDY---VHRIGRTGRGG----SMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 429 v~T~--~~~~Gidip~v~~Vi~~~~~~s~~~~---~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~l 489 (565)
+-|. -+-+-.+|.+|..||+|.||..+.-| +.+.+|+.-.| ..-.|.++|++-|..-+..+
T Consensus 607 LyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 607 LYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred EEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 9996 35578899999999999999988766 66666665433 34678888888776665554
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.13 E-value=5.8e-09 Score=106.92 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=97.4
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCc------------------eeEecCCCCHHHHHHHHHHhhcC---CceEEEEcC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLH------------------AVALHGGRNQSDRESALRDFRNG---STNILVATD 432 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~------------------~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~ 432 (565)
+.++|||.......+.+.+.|....++ ...+.|..+..+|+.++++|.+. ..-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 456999999999888888888765332 34678889999999999999874 235889999
Q ss_pred cccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHH
Q 008430 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 490 (565)
...-|||+-..+.+|.+|..|++.--.|.+-|+.|.|+...|+++-.--|....+.|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999998887666665555553
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.13 E-value=7.3e-10 Score=107.42 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHh----HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 143 ~~~~~Q~~~l~~----l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
+|+|.|.+.+.. +..|+++++.+|||+|||+++++|++.++...... ..+.+++|+++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999995554 45788999999999999999999998876653210 01347999999999999988887765
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.13 E-value=7.3e-10 Score=107.42 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHh----HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 143 ~~~~~Q~~~l~~----l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
+|+|.|.+.+.. +..|+++++.+|||+|||+++++|++.++...... ..+.+++|+++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999995554 45788999999999999999999998876653210 01347999999999999988887765
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.11 E-value=3.8e-09 Score=99.45 Aligned_cols=129 Identities=26% Similarity=0.344 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
-..|++.|..++-.+..|+ |+.+.||-|||+++.+++....+. |..|-||+.+..|+..-++++..++..
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 3579999999998887776 999999999999998888776664 777999999999999999999999988
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHH-HHHHcCC------CCCCCceEEEecchhHhh
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQGN------TSLSRVSFVILDEADRML 282 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~-~~l~~~~------~~~~~~~~iIiDE~H~~~ 282 (565)
+ ++.++...++.......... .++|+++|...|. +.+.... .....++++||||+|.++
T Consensus 145 L-Glsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 L-GLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-T--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred h-hhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7 79999999988766554444 3789999999984 4554421 124578999999999765
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.10 E-value=9.5e-09 Score=107.16 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=61.5
Q ss_pred CCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCC--Cce-----------eEEEEeccccHHHHHHH
Q 008430 423 GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG--SMG-----------QATSFYTDRDMLLVAQI 489 (565)
Q Consensus 423 g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g--~~g-----------~~~~~~~~~~~~~~~~l 489 (565)
...++|++..++-+|.|-|+|=++.-+....|-..=+|.+||+.|.. +.| .-.+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 35789999999999999999999999999999999999999999932 222 22456777788888888
Q ss_pred HHHHHhhh
Q 008430 490 KKAIVDAE 497 (565)
Q Consensus 490 ~~~~~~~~ 497 (565)
.+.+.+..
T Consensus 562 qkEI~~~s 569 (985)
T COG3587 562 QKEINDES 569 (985)
T ss_pred HHHHHHhh
Confidence 88876554
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.93 E-value=2.7e-08 Score=108.08 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=55.6
Q ss_pred hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecC
Q 008430 243 RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 243 ~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.....|+++||+.|..-+..+.++++.+..|||||||++.+..-...+.+++....+..-+.+|||.|.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 345679999999999888889999999999999999999866544555566655555556999999994
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.80 E-value=4.2e-08 Score=102.54 Aligned_cols=316 Identities=18% Similarity=0.202 Sum_probs=179.3
Q ss_pred HHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCce
Q 008430 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFK 225 (565)
Q Consensus 146 ~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~ 225 (565)
.+-.+.+..+...+-++|-+.||+|||..++--+++.++..... .-.-+.+.-|++..+.-+++.+.+--.....-.
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g---~~~na~v~qprrisaisiaerva~er~e~~g~t 457 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG---ASFNAVVSQPRRISAISLAERVANERGEEVGET 457 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc---ccccceeccccccchHHHHHHHHHhhHHhhccc
Confidence 34455666666667789999999999999888888877765321 112256666888777777666655322111111
Q ss_pred EEEEECCCCHHHHHHHH-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC---CCCC
Q 008430 226 TAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PDKH 301 (565)
Q Consensus 226 ~~~~~g~~~~~~~~~~~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~---~~~~ 301 (565)
+ |- +.... ... ...--|++||.+.+.+.+....+ .+.++|+||.|..--. ...+..+++-+ -+..
T Consensus 458 v----gy-~vRf~-Sa~prpyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 458 C----GY-NVRFD-SATPRPYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVD--TDFVLIVLREMISTYRDL 526 (1282)
T ss_pred c----cc-ccccc-ccccccccceeeeccchhhhhhhhccc---ccccccchhhhhhccc--hHHHHHHHHhhhccchhh
Confidence 1 11 10000 011 11234889999999988886543 5788999999964322 11122222221 1233
Q ss_pred cEEEEEeecChHH--------------------HHHHHHHcCCCeEEEeCCc-----------CCCCCc-eEEEEEEe--
Q 008430 302 QTLLFSATMPVEI--------------------EALAQEYLTDPVQVKVGKV-----------SSPTAN-VIQILEKV-- 347 (565)
Q Consensus 302 ~~l~~SAT~~~~~--------------------~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~-- 347 (565)
.+++||||+..+. +.+....+..+........ .....+ ........
T Consensus 527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 4555555553321 1122222211111100000 000000 00000000
Q ss_pred --------------ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-------CCceeEecC
Q 008430 348 --------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHG 406 (565)
Q Consensus 348 --------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-------~~~~~~~~~ 406 (565)
........+++.+... .....-.+-+++|.+--...-.|...+... ...+..+|+
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~----i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hs 682 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLND----IASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHS 682 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhh----hcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchh
Confidence 0001111222222221 122222345899999888888888887654 346778899
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCC------------------CCcccceecccccccC
Q 008430 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------------------KTVEDYVHRIGRTGRG 468 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------------------~s~~~~~Q~~GR~~R~ 468 (565)
-....+..++.+....|..++|++|.+....+.+-++..|++.+.. .|....+|+.||+||.
T Consensus 683 q~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv 762 (1282)
T KOG0921|consen 683 QLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV 762 (1282)
T ss_pred hcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee
Confidence 8888888889888888999999999999999998887777654321 1455669999999997
Q ss_pred CCceeEEEEecc
Q 008430 469 GSMGQATSFYTD 480 (565)
Q Consensus 469 g~~g~~~~~~~~ 480 (565)
++|.|..++..
T Consensus 763 -R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 763 -RPGFCFHLCSR 773 (1282)
T ss_pred -cccccccccHH
Confidence 56888777654
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.67 E-value=4.8e-09 Score=111.41 Aligned_cols=267 Identities=16% Similarity=0.190 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 143 RPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
...|.|...+..+..- .++++.+|||+|||++|.+.++..+... .+.++++++|-.+|+..-.+.+.+....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~r~~~- 999 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSKRDEL- 999 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhhhccc-
Confidence 4566677666665543 4689999999999999988777655443 3678999999999999888888877654
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc--CCCCCCCceEEEecchhHhhcCCCHHHHHHH------
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLDMGFEPQIREV------ 293 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~--~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i------ 293 (565)
+++++.-++|+....... ....+++|+||+++...... ..-.+.+++++|+||.|.+.+. +++.++.+
T Consensus 1000 ~g~k~ie~tgd~~pd~~~---v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPDVKA---VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNY 1075 (1230)
T ss_pred CCceeEeccCccCCChhh---eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeecccc
Confidence 378888888887655221 24589999999999877763 3455778999999999977543 33322222
Q ss_pred -HHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCC
Q 008430 294 -MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 294 -~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ 372 (565)
-....+..+++++|--+... ..+..+++....+.......+.+ ....+...+. ...-.....+.+......+...
T Consensus 1076 ~s~~t~~~vr~~glsta~~na--~dla~wl~~~~~~nf~~svrpvp-~~~~i~gfp~-~~~cprm~smnkpa~qaik~~s 1151 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLSTALANA--NDLADWLNIKDMYNFRPSVRPVP-LEVHIDGFPG-QHYCPRMMSMNKPAFQAIKTHS 1151 (1230)
T ss_pred CccccCcchhhhhHhhhhhcc--HHHHHHhCCCCcCCCCcccccCC-ceEeecCCCc-hhcchhhhhcccHHHHHHhcCC
Confidence 12233445666665444221 23334444333221111111111 1111122221 0111112222334444555667
Q ss_pred CCCeEEEEecccchHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHhhcCCce
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
|..++|||+.++.....-+..|-. ..-+...++ ++..+-+.++...++..++
T Consensus 1152 p~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1152 PIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccchh
Confidence 888999999988765444444322 111222333 3356666667666665443
No 176
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.64 E-value=6.7e-08 Score=102.70 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=92.3
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCC-ce-EEEEcCcccCCCCccCccEEEEcCCC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-TN-ILVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
++++||++-...+..+...|...++....+.|.|+...|...+..|..+. .. .+++..+.+.|+++-...+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 47999999999999999999989999999999999999999999999653 33 45677899999999999999999999
Q ss_pred CCcccceecccccccCCCceeEEE
Q 008430 453 KTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 453 ~s~~~~~Q~~GR~~R~g~~g~~~~ 476 (565)
|++..--|.+-|+.|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999877765
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.62 E-value=1.8e-07 Score=85.55 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHhHhCCC-C-EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 143 RPTSIQAQAMPVALSGR-D-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~-~-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
+|++-|++++..++... + .++.|+.|+|||.+. -.+...+.. .+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-------AGKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-------TT--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhhC-----
Confidence 47899999999997543 3 678899999999864 444444444 36789999999888776554411
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC----CCCCCceEEEecchhHhhcCCCHHHHHHHHHh
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~----~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
. -..|...++....... ..+...++|||||+-.+. ...+..++..
T Consensus 68 ---~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~ 116 (196)
T PF13604_consen 68 ---I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRL 116 (196)
T ss_dssp ---S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHH
T ss_pred ---c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHH
Confidence 0 1223222221111110 114567899999999876 6677888888
Q ss_pred CCC-CCcEEEEEee
Q 008430 297 LPD-KHQTLLFSAT 309 (565)
Q Consensus 297 ~~~-~~~~l~~SAT 309 (565)
.+. ..++|++.=+
T Consensus 117 ~~~~~~klilvGD~ 130 (196)
T PF13604_consen 117 AKKSGAKLILVGDP 130 (196)
T ss_dssp S-T-T-EEEEEE-T
T ss_pred HHhcCCEEEEECCc
Confidence 876 5666665544
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.56 E-value=3.1e-07 Score=83.07 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH-------HHHH
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-------EKEV 214 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~-------~~~~ 214 (565)
...+..|..++..+....-+++.||.|||||++++..+++.+... .-.+++++-|..+..+.+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456889999999999777799999999999999977777766542 345688888876542211 1111
Q ss_pred HHHhhc----CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHH
Q 008430 215 KALSRS----LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 215 ~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
..++.. +..+. +..... .+.....|-+.....+. ...++ -.+||||||+.+. ...+
T Consensus 77 ~p~~~p~~d~l~~~~-----~~~~~~----~~~~~~~Ie~~~~~~iR------Grt~~-~~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-----GKEKLE----ELIQNGKIEIEPLAFIR------GRTFD-NAFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp -TTTHHHHHHHTTTS------TTCHH----HHHHTTSEEEEEGGGGT------T--B--SEEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHh-----ChHhHH----HHhhcCeEEEEehhhhc------Ccccc-ceEEEEecccCCC----HHHH
Confidence 111100 00000 111111 11123445555543332 11232 3899999999887 7788
Q ss_pred HHHHHhCCCCCcEEEEEee
Q 008430 291 REVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~SAT 309 (565)
..++.++..+.+++++.-.
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 9999999988877776544
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.53 E-value=1.5e-06 Score=82.16 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=108.2
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHh----------CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 008430 125 DMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL----------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 125 ~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~----------~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 194 (565)
.+.|++.++.. -.+...|.+++-... .+..+++-..||.||--..+--+++.++. ..
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------Gr 91 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------GR 91 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------CC
Confidence 34677655433 257888988886554 12358999999999998776656666654 24
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC---CCC-----
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTS----- 266 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~---~~~----- 266 (565)
++.|+|..+..|.....+.++.+... .+.+..+..-.. . ....-+..|||+|+..|...-... ...
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC--cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 56999999999999999999887643 233322221100 0 011224579999999987654321 111
Q ss_pred ----CCCceEEEecchhHhhcCCC--------HHHHHHHHHhCCCCCcEEEEEeecChH
Q 008430 267 ----LSRVSFVILDEADRMLDMGF--------EPQIREVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 267 ----~~~~~~iIiDE~H~~~~~~~--------~~~~~~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
-+.=.+||+||||.+.+..- +.....+.+.++ +.+++.+|||-..+
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 12235899999999876532 123444555665 55699999997544
No 180
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=1.1e-06 Score=88.60 Aligned_cols=142 Identities=21% Similarity=0.211 Sum_probs=76.4
Q ss_pred EEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH----HH
Q 008430 163 GCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA----EQ 238 (565)
Q Consensus 163 i~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~ 238 (565)
..++||+|||++.+-.++.. ..+ .-...||.|....++.....-|..-...---+.-.+.+++.... ..
T Consensus 2 f~matgsgkt~~ma~lil~~-y~k------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKK------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHh------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 46899999999875555544 433 13348888888777776554443221110000111112222111 00
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCC---C---CCCCceEEEe-cchhHhhcCC---------CHHHHHHH-HHhCC--C
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGN---T---SLSRVSFVIL-DEADRMLDMG---------FEPQIREV-MQNLP--D 299 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~---~---~~~~~~~iIi-DE~H~~~~~~---------~~~~~~~i-~~~~~--~ 299 (565)
....+....|+++|.|.|...+.+.. . .+.+..+|.+ ||+||+-... -...+... +..+. +
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 11234568899999999987765532 2 2445556555 9999986321 11122222 22222 2
Q ss_pred CCcEEEEEeecC
Q 008430 300 KHQTLLFSATMP 311 (565)
Q Consensus 300 ~~~~l~~SAT~~ 311 (565)
+.-++.+|||.+
T Consensus 155 d~~~lef~at~~ 166 (812)
T COG3421 155 DNLLLEFSATIP 166 (812)
T ss_pred CceeehhhhcCC
Confidence 333677899987
No 181
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.47 E-value=9.9e-07 Score=83.55 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHhHhCCCC-EEEEccCCChhHHHHHHHHHHHHHhcC-CCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 143 RPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~-~li~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
++++.|.+|+..++.... .+|.||.|||||.+. ..++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468999999999998887 999999999999764 34444442100 00012477899999999999999999888
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.41 E-value=7.7e-07 Score=79.11 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=74.1
Q ss_pred CeEEEEecccchHHHHHHHHHHcCC--ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC--cccCCCCccC--ccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATD--VASRGLDVMG--VAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gidip~--v~~Vi~ 448 (565)
+.+|||++|....+.+.+.+..... ....+.. ...++..+++.|++++-.||+++. .+.+|||+|+ ++.||.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 5699999999999999999887542 1122222 356789999999999999999998 9999999996 778999
Q ss_pred cCCCCCcc------------------------------cceecccccccCCCceeEEEEeccc
Q 008430 449 LDLPKTVE------------------------------DYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 449 ~~~~~s~~------------------------------~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
.+.|.... ...|.+||+-|...+--++++++.+
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 88874211 1178899999998876677777765
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.40 E-value=5.9e-06 Score=84.33 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=67.3
Q ss_pred HHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHH
Q 008430 135 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 135 ~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~ 214 (565)
.+...++++|+.-|..|+..+++..-.||.||.|+|||.+.+ .++.++.+. .+..+|+++|..--+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 555678899999999999999998889999999999999874 455555554 3566999999999999999888
Q ss_pred HHHhhcCCCceEEEEE
Q 008430 215 KALSRSLDSFKTAIVV 230 (565)
Q Consensus 215 ~~~~~~~~~~~~~~~~ 230 (565)
.+. ++++..+.
T Consensus 475 h~t-----gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT-----GLKVVRLC 485 (935)
T ss_pred Hhc-----CceEeeee
Confidence 774 45555444
No 184
>PRK10536 hypothetical protein; Provisional
Probab=98.30 E-value=1.8e-05 Score=73.70 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=82.7
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH-------HH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ-------QI 210 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~-------Q~ 210 (565)
..++...+..|...+..+.....+++.|++|||||+++....++.+... .-.++++.-|..+... ..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3456677889999999998877889999999999998855555444332 1234555556644221 11
Q ss_pred HHHHHHHhhcC-CCceEEEEECCCCHHHHHHHH-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHH
Q 008430 211 EKEVKALSRSL-DSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (565)
Q Consensus 211 ~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 288 (565)
.+.+..++... +.+.. +.+...... .+ ...-.|-|.....+ . + ..++ -++||||||+.+. ..
T Consensus 128 ~eK~~p~~~pi~D~L~~--~~~~~~~~~---~~~~~~~~Iei~~l~ym----R-G-rtl~-~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR--RLGASFMQY---CLRPEIGKVEIAPFAYM----R-G-RTFE-NAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHHHHH--HhChHHHHH---HHHhccCcEEEecHHHh----c-C-Cccc-CCEEEEechhcCC----HH
Confidence 22222222110 00000 011111111 11 11233445443222 1 1 2232 3799999999876 67
Q ss_pred HHHHHHHhCCCCCcEEEE
Q 008430 289 QIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 289 ~~~~i~~~~~~~~~~l~~ 306 (565)
.+..++..+..+.++|++
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 788899999888866653
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.29 E-value=2.5e-06 Score=86.54 Aligned_cols=65 Identities=28% Similarity=0.389 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHhHhCCCC-EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~ 214 (565)
..+.+-|+.|+....+.++ .++.||+|||||.+. .-++.++..+ +.++|+++|+..-+..+.+++
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHh
Confidence 3678899999999988865 789999999999985 5566666664 788999999999999888853
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.21 E-value=1.7e-05 Score=84.49 Aligned_cols=142 Identities=19% Similarity=0.256 Sum_probs=90.2
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
.++|++|+...+.++-.+|.|++|||||.+. ..++..+.+.. .....++++++||..-+..+.+.+.......+ .
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c
Confidence 5899999999998888999999999999874 44444443321 11235689999999888887777665443211 0
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHH------cCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC
Q 008430 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~------~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
.. ........-..|..+|+.... .+....-.+++|||||+-++- ...+..++..++
T Consensus 229 -----~~---------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 -----TD---------EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred -----ch---------hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 00 000011112334444432211 111123347899999999764 677888899999
Q ss_pred CCCcEEEEEee
Q 008430 299 DKHQTLLFSAT 309 (565)
Q Consensus 299 ~~~~~l~~SAT 309 (565)
+..++|++.=.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 98888887544
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.20 E-value=7.7e-06 Score=82.29 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=68.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
++|.|..|||||+++ +.++..+.. ...+.+++++++...|.....+.+..... .
T Consensus 4 ~~I~G~aGTGKTvla-~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------~--------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLA-LNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------P--------- 57 (352)
T ss_pred EEEEecCCcCHHHHH-HHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc-----------c---------
Confidence 789999999999987 555555511 11467799999999998877777766430 0
Q ss_pred HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-------CHHHHHHHHHh
Q 008430 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-------FEPQIREVMQN 296 (565)
Q Consensus 241 ~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-------~~~~~~~i~~~ 296 (565)
......+..+..+.............+++|||||||++...+ ....+..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001123444444443333223456679999999999998631 23456666655
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.18 E-value=2.3e-05 Score=83.33 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=90.0
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCc
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
.++|+.|+...+.++-++|.|+.|||||.+. ..++..+...... . .+.++++.+||-.-+..+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~-~-~~~~I~l~APTGkAA~rL~e~~~~~~~~l~-- 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK-Q-GKLRIALAAPTGKAAARLAESLRKAVKNLA-- 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc-c-CCCcEEEECCcHHHHHHHHHHHHhhhcccc--
Confidence 3799999999999888999999999999875 4444444432110 0 135799999998887777666655332110
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHH------cCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC
Q 008430 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~------~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
.. . .......+-..|..+|+.... ........+++|||||+-++. ...+..++..++
T Consensus 222 -~~--------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~ 284 (586)
T TIGR01447 222 -AA--------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALP 284 (586)
T ss_pred -cc--------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcC
Confidence 00 0 000111122445555433211 111223358999999999765 667888889998
Q ss_pred CCCcEEEEEee
Q 008430 299 DKHQTLLFSAT 309 (565)
Q Consensus 299 ~~~~~l~~SAT 309 (565)
+..++|++.=.
T Consensus 285 ~~~rlIlvGD~ 295 (586)
T TIGR01447 285 PNTKLILLGDK 295 (586)
T ss_pred CCCEEEEECCh
Confidence 88888876443
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.17 E-value=2e-05 Score=84.91 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
..+++.|.+|+..++.. ..++|.||+|||||.+. ..++..+... +.++|+++|+..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46899999999998876 56889999999999875 4555555542 66899999999999988888776
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.10 E-value=3.1e-05 Score=84.75 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
-..+++.|++|+..+..++-++|.|+.|||||.+. -.++..+.... ....+++++||-.-+..+.+. .+
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~----~g- 389 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEV----TG- 389 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHh----cC-
Confidence 35799999999999988888999999999999864 33444333320 115688899998776644322 11
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-----CCCCCCCceEEEecchhHhhcCCCHHHHHHHHH
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-----GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-----~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
.. -.|..+++..... ..-.....++|||||++++. ...+..++.
T Consensus 390 ---~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~ 438 (720)
T TIGR01448 390 ---LT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLA 438 (720)
T ss_pred ---Cc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHH
Confidence 00 0111111110000 00112357899999999875 556778888
Q ss_pred hCCCCCcEEEEEee
Q 008430 296 NLPDKHQTLLFSAT 309 (565)
Q Consensus 296 ~~~~~~~~l~~SAT 309 (565)
.++...++|++.-+
T Consensus 439 ~~~~~~rlilvGD~ 452 (720)
T TIGR01448 439 ALPDHARLLLVGDT 452 (720)
T ss_pred hCCCCCEEEEECcc
Confidence 88888888886544
No 191
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.05 E-value=8.7e-05 Score=67.86 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=83.3
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhC---CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS---GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 123 f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~---g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
|+....|..++-.+. +-.-+++.|.+....+.+ |.+.+..+-+|.|||.+. +|++..++.. ...-+.+
T Consensus 5 w~p~~~P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd------g~~Lvrv 75 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD------GSRLVRV 75 (229)
T ss_pred CCchhChHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC------CCcEEEE
Confidence 444444455543332 223679999999988874 568999999999999986 9999988874 2345677
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceE--EEEECCCCHH----HHH----HHHhCCCcEEEEccHHHHHH
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKT--AIVVGGTNIA----EQR----SELRGGVSIVVATPGRFLDH 259 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~--~~~~g~~~~~----~~~----~~~~~~~~ilv~T~~~l~~~ 259 (565)
+|| ++|..|..+.++..++..-+-.+ .-+.-..... ... ........|+++||+.+..+
T Consensus 76 iVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 76 IVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred EcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 777 68999999999988875432222 2222222211 111 12234567999999998544
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.94 E-value=2.8e-05 Score=74.51 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=88.2
Q ss_pred CCCCCCCHHHHHHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 139 HEYTRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.|+...+..|.-|+..++... =+.+.|+.|||||+.++.+.+.+.+.++. -.++++-=|+..+.+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCccccc------
Confidence 477778889999999998664 37789999999999998888888777542 34477766776655322
Q ss_pred HhhcCCCceEEEEECCC--CHHHHHHHHhCCCcEEE----EccHHHHHHHHcCCCCCCC----------ceEEEecchhH
Q 008430 217 LSRSLDSFKTAIVVGGT--NIAEQRSELRGGVSIVV----ATPGRFLDHLQQGNTSLSR----------VSFVILDEADR 280 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~ilv----~T~~~l~~~l~~~~~~~~~----------~~~iIiDE~H~ 280 (565)
+.+-|.. +...|...+..+-.+++ ++.+.+...+....+.+.. =.+||||||+.
T Consensus 293 ----------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN 362 (436)
T COG1875 293 ----------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN 362 (436)
T ss_pred ----------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhc
Confidence 1111111 11111111111111111 1133444443333322211 25799999998
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
+. ...+..|+.+..+..++|++.
T Consensus 363 LT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 363 LT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred cC----HHHHHHHHHhccCCCEEEEcC
Confidence 87 778899999999888777643
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.89 E-value=0.00011 Score=81.93 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHhHhCCCC-EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..|++-|++|+..++.+++ ++|.|..|+|||.+ +-.+..+... .|.+++.++||--.+..+. .-.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~----e~t-- 410 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENLE----GGS-- 410 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHHh----hcc--
Confidence 4699999999999998664 78999999999986 3333333332 3778999999976554332 110
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~ 299 (565)
++. -.|..+|......+...+...++|||||+-++. ...+..++... ..
T Consensus 411 --Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~ 460 (988)
T PRK13889 411 --GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADA 460 (988)
T ss_pred --Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhC
Confidence 110 112233322222223345567899999999775 44566666544 45
Q ss_pred CCcEEEEEee
Q 008430 300 KHQTLLFSAT 309 (565)
Q Consensus 300 ~~~~l~~SAT 309 (565)
..++|++.=+
T Consensus 461 garvVLVGD~ 470 (988)
T PRK13889 461 GAKVVLVGDP 470 (988)
T ss_pred CCEEEEECCH
Confidence 6677776544
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.84 E-value=0.00016 Score=79.62 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..+++-|++|+..++.+ +-++|.|+.|+|||.+. -.+. .++.. .|.++++++||--.+..+. .-.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~-~~~~~------~g~~V~~~ApTg~Aa~~L~----~~~-- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAR-EAWEA------AGYRVIGAALSGKAAEGLQ----AES-- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHH-HHHHh------CCCeEEEEeCcHHHHHHHH----hcc--
Confidence 46899999999999875 45789999999999764 3333 33332 3678999999976555432 211
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~ 299 (565)
++. -.|..++..........+...++|||||+-++. ...+..++... ..
T Consensus 417 --g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~ 466 (744)
T TIGR02768 417 --GIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEA 466 (744)
T ss_pred --CCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 111 112222221122222335578999999999765 34445555532 34
Q ss_pred CCcEEEEE
Q 008430 300 KHQTLLFS 307 (565)
Q Consensus 300 ~~~~l~~S 307 (565)
..++|++.
T Consensus 467 ~~kliLVG 474 (744)
T TIGR02768 467 GAKVVLVG 474 (744)
T ss_pred CCEEEEEC
Confidence 56666654
No 195
>PF13245 AAA_19: Part of AAA domain
Probab=97.83 E-value=7.2e-05 Score=56.36 Aligned_cols=60 Identities=32% Similarity=0.461 Sum_probs=40.5
Q ss_pred HHHhHhCCCC-EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHH
Q 008430 151 AMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 151 ~l~~l~~g~~-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~ 214 (565)
++...+.+.+ ++|.||.|||||.+. +..+..+.... .. .+.++|+++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~--~~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL-AARIAELLAAR--AD-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH-HHHHHHHHHHh--cC-CCCeEEEECCCHHHHHHHHHHH
Confidence 4442333444 566999999999776 44444444321 01 2667999999999999888877
No 196
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.79 E-value=0.00014 Score=77.30 Aligned_cols=136 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcC-----------C--------CC---------
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-----------P--------VG--------- 190 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~-----------~--------~~--------- 190 (565)
+||+.|...+..++ ...++++-.|||+|||+..+-..+.+..... . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999998888776 3467999999999999876555554433221 0 00
Q ss_pred -C-----CCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCC------------------------------
Q 008430 191 -R-----GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN------------------------------ 234 (565)
Q Consensus 191 -~-----~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~------------------------------ 234 (565)
. ..-+++.|-.-|-.-+.|+.+++++..-. ....++..-..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~---vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR---VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC---CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 0 01356666666666677888888775421 12221111000
Q ss_pred --------------------HHH--------------HHHHHhCCCcEEEEccHHHHHHHHcCC--CCCCCceEEEecch
Q 008430 235 --------------------IAE--------------QRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEA 278 (565)
Q Consensus 235 --------------------~~~--------------~~~~~~~~~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~ 278 (565)
.++ ....+..+++||||-+..|.+-..+.. +++.+ ..||+|||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEA 256 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEA 256 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEecc
Confidence 000 002234679999999999987776654 44543 68999999
Q ss_pred hHhh
Q 008430 279 DRML 282 (565)
Q Consensus 279 H~~~ 282 (565)
|.+.
T Consensus 257 HNiE 260 (945)
T KOG1132|consen 257 HNIE 260 (945)
T ss_pred ccHH
Confidence 9764
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.74 E-value=0.00015 Score=77.68 Aligned_cols=124 Identities=25% Similarity=0.229 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHhHhCCCC-EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..|+.-|++|+..++..++ .||.|=+|||||.+. ..++..+.. .|++||+.+=|-.-+..+.-.++..
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~-------~gkkVLLtsyThsAVDNILiKL~~~--- 736 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVA-------LGKKVLLTSYTHSAVDNILIKLKGF--- 736 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHH-------cCCeEEEEehhhHHHHHHHHHHhcc---
Confidence 5789999999999988776 788999999999875 334444444 3888999998888877776666654
Q ss_pred CCCceEEEEECCCCHH-----------------HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 221 LDSFKTAIVVGGTNIA-----------------EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~-----------------~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
++....+..+.... .......+...||.+|---+.+.+ +....|||+|||||-.+.
T Consensus 737 --~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 --GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred --CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 22222222111111 111123356778888854444333 344569999999999765
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.69 E-value=0.00055 Score=76.96 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..|++-|.+|+..+..+ +-++|.|+.|+|||.+. -.+.. +... .|.+++.++|+-.-+..+ .+-.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~-~~e~------~G~~V~g~ApTgkAA~~L----~e~~-- 445 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAARE-AWEA------AGYRVVGGALAGKAAEGL----EKEA-- 445 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHH-HHHH------cCCeEEEEcCcHHHHHHH----HHhh--
Confidence 47999999999988644 44889999999999864 33333 3332 377899999986655443 2221
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC-C
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-D 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-~ 299 (565)
++. -.|..+|......+...+..-++|||||+.++. ...+..++.... .
T Consensus 446 --Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 446 --GIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRA 495 (1102)
T ss_pred --CCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 111 122222211111222345567899999999775 555666776664 4
Q ss_pred CCcEEEEEee
Q 008430 300 KHQTLLFSAT 309 (565)
Q Consensus 300 ~~~~l~~SAT 309 (565)
..++|++.=+
T Consensus 496 garvVLVGD~ 505 (1102)
T PRK13826 496 GAKLVLVGDP 505 (1102)
T ss_pred CCEEEEECCH
Confidence 6777776544
No 199
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.68 E-value=0.00015 Score=62.12 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=53.6
Q ss_pred cCCCCHHHHHHHHHHhhcCC-ceEEEEcCcccCCCCccC--ccEEEEcCCCCC---------------------------
Q 008430 405 HGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMG--VAHVVNLDLPKT--------------------------- 454 (565)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidip~--v~~Vi~~~~~~s--------------------------- 454 (565)
.-+....+...+++.|++.. ..||++|.-+.+|||+|+ ++.||..+.|..
T Consensus 28 ~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 107 (141)
T smart00492 28 VQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVS 107 (141)
T ss_pred EeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHH
Confidence 33344556788899998754 379999988999999997 568888776631
Q ss_pred ----cccceecccccccCCCceeEEEEecc
Q 008430 455 ----VEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 455 ----~~~~~Q~~GR~~R~g~~g~~~~~~~~ 480 (565)
...+.|.+||+-|...+--++++++.
T Consensus 108 ~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 108 LPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 11227888999998765445555544
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.60 E-value=0.0016 Score=55.12 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=56.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
++.++|.|++|+|||.+. -.++..+...... ......+.+-+|...-...+...+...++.... . ......
T Consensus 4 ~~~~~i~G~~G~GKT~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~ 74 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI-KRLARQLNAEAEI-KNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-S------RQTSDE 74 (131)
T ss_dssp ---EEEEE-TTSSHHHHH-HHHHHHHHHHHHH-CCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-S------TS-HHH
T ss_pred CcccEEEcCCCCCHHHHH-HHHHHHhHHhhhc-cCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-c------cCCHHH
Confidence 446899999999999875 3333333221000 001222344444444344455554444432111 1 111111
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
.. +.+.+.+.... ..+|||||+|++. . ...+..+........--+++.+++
T Consensus 75 l~--------------~~~~~~l~~~~-----~~~lviDe~~~l~-~--~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 75 LR--------------SLLIDALDRRR-----VVLLVIDEADHLF-S--DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HH--------------HHHHHHHHHCT-----EEEEEEETTHHHH-T--HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HH--------------HHHHHHHHhcC-----CeEEEEeChHhcC-C--HHHHHHHHHHHhCCCCeEEEEECh
Confidence 11 22334444322 2789999999974 1 444555544443333356666665
No 201
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.60 E-value=3.6e-06 Score=88.67 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=56.1
Q ss_pred CCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhc---CCceEEEEcCcccCC
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GSTNILVATDVASRG 437 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vLv~T~~~~~G 437 (565)
.+++++||..-....+.+.+.+...+ ....++|.....+|+..+++|.. ....+|++|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 45579999999999999999999999 88999999999999999999984 356789999887655
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.59 E-value=0.00029 Score=60.44 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcCCc---eEEEEcCc--ccCCCCccC--ccEEEEcCCCCC-----------------------------
Q 008430 411 SDRESALRDFRNGST---NILVATDV--ASRGLDVMG--VAHVVNLDLPKT----------------------------- 454 (565)
Q Consensus 411 ~~r~~~~~~f~~g~~---~vLv~T~~--~~~Gidip~--v~~Vi~~~~~~s----------------------------- 454 (565)
.+...+++.|++..- .||+++.- +.+|||+|+ ++.||..+.|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345678888887543 69998876 999999998 678888777631
Q ss_pred --cccceecccccccCCCceeEEEEecc
Q 008430 455 --VEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 455 --~~~~~Q~~GR~~R~g~~g~~~~~~~~ 480 (565)
.....|.+||+-|...+--++++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 01127899999998766555666554
No 203
>PRK06526 transposase; Provisional
Probab=97.48 E-value=0.00032 Score=66.58 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=28.5
Q ss_pred HhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 153 ~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
+.+..+.+++++||+|+|||..+ ..+...+.. .|.+++|+..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa-~al~~~a~~-------~g~~v~f~t~ 134 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLA-IGLGIRACQ-------AGHRVLFATA 134 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHH-HHHHHHHHH-------CCCchhhhhH
Confidence 44556778999999999999876 444444443 2556766544
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.47 E-value=0.00022 Score=64.91 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=25.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
-.++.|++|+|||..+ +-++..+.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~-l~~~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTEL-LQRAYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHHH-------cCCeEEEEec
Confidence 3688999999999765 555555443 3667888866
No 205
>PRK08181 transposase; Validated
Probab=97.45 E-value=0.0013 Score=62.80 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=36.7
Q ss_pred CCHHHHHHHH----hHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 144 PTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 144 ~~~~Q~~~l~----~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
+.+.|..++. .+..++++++.||+|+|||..+ ..+...+.. .|..++|+. ..+|..+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~-------~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIE-------NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHH-------cCCceeeee-HHHHHHHH
Confidence 4455555553 4447788999999999999875 444444444 255576665 34555544
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.40 E-value=0.00063 Score=68.68 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHhH------hCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH--HHHH
Q 008430 143 RPTSIQAQAMPVA------LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI--EKEV 214 (565)
Q Consensus 143 ~~~~~Q~~~l~~l------~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~--~~~~ 214 (565)
+|++-|++++..+ ..+..++|.|+-|+|||+++ -.+...... .+..+++++||-.-|..+ -.++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~------~~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS------RGKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc------ccceEEEecchHHHHHhccCCcch
Confidence 4788899998888 56778999999999999874 333333332 366799999997666544 2344
Q ss_pred HHHh
Q 008430 215 KALS 218 (565)
Q Consensus 215 ~~~~ 218 (565)
..++
T Consensus 73 hs~f 76 (364)
T PF05970_consen 73 HSFF 76 (364)
T ss_pred HHhc
Confidence 4443
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.38 E-value=0.0021 Score=55.34 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999764
No 208
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.36 E-value=0.00061 Score=67.56 Aligned_cols=123 Identities=23% Similarity=0.172 Sum_probs=76.6
Q ss_pred CCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCC
Q 008430 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~ 223 (565)
|++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..+.++.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 57889999988 5667999999999999987555444443321 1356699999999999999999999875421
Q ss_pred ceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCC--CCceEEEecchh
Q 008430 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSL--SRVSFVILDEAD 279 (565)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~--~~~~~iIiDE~H 279 (565)
.. .............-..+.|+|...+...+....... -.-.+-++|+..
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000011112222335678999998876544321111 123456777776
No 209
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.34 E-value=0.018 Score=69.98 Aligned_cols=135 Identities=13% Similarity=0.203 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 143 RPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
.+++-|++|+..++... -.+|.|+.|+|||.+. - .+..+.+. .|.+++.++|+-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~-~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-Q-LLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-H-HHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 68999999999998763 4889999999999863 3 33334433 478899999998766655443221100
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~ 299 (565)
....+...+.. ..-..|.+.|. ....++..-++|||||+-++. ...+..++... ..
T Consensus 500 -------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 500 -------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQH 556 (1960)
T ss_pred -------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhc
Confidence 00011111111 11123333343 122344567899999999776 56667777655 45
Q ss_pred CCcEEEEEee
Q 008430 300 KHQTLLFSAT 309 (565)
Q Consensus 300 ~~~~l~~SAT 309 (565)
+.++|++.=+
T Consensus 557 garvVlvGD~ 566 (1960)
T TIGR02760 557 NSKLILLNDS 566 (1960)
T ss_pred CCEEEEEcCh
Confidence 7788887654
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.0033 Score=57.29 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=67.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
++++||||+|||.+. .-+..++..+ +.++.+++ ..|.=+.++.+.+.+.+ ++.+..........+
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~-------~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~~~~~- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLK-------GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTESDPAE- 70 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTSCHHH-
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhc-------cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcchhhHH-
Confidence 678999999999875 4444444432 44455555 23333444444444443 222222111111111
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHH
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 317 (565)
.+.+.+.. ...+++++|+||-+-+... ......+..++....+..-++.++||...+....
T Consensus 71 ----------------~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 71 ----------------IAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp ----------------HHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred ----------------HHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 11122221 1223588999999875432 1124456666767666556888999997665444
Q ss_pred HHHH
Q 008430 318 AQEY 321 (565)
Q Consensus 318 ~~~~ 321 (565)
+..+
T Consensus 133 ~~~~ 136 (196)
T PF00448_consen 133 ALAF 136 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.10 E-value=0.0067 Score=59.91 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=37.2
Q ss_pred CceEEEecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 269 RVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.+++|+||.+.++.. ......+..+.....+...++.++||...+....+..+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 568999999998753 23455566776666677778888998876655555544
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.05 E-value=0.0012 Score=56.46 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
+..+++.||+|+|||.+. ..++..+.. .+..++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~~-------~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELGP-------PGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccCC-------CCCCEEEECCEEcccc
Confidence 456899999999999875 333332221 1124777777654433
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0098 Score=59.92 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=79.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+.++++||||+|||.+..- +...+.... ...+.++.++. +.+.-+..+ ++.+.... ++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aK-LA~~~~~~~---~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAK-LAAIYGINS---DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHhhh---ccCCCeEEEEeccCccHHHHHH---HHHHhhcC-CcceE---------
Confidence 3588999999999988643 222222110 01244555554 333333332 33333211 22211
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-CHHHHHHHHHhCCCC-CcEEEEEeecChH-
Q 008430 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDK-HQTLLFSATMPVE- 313 (565)
Q Consensus 237 ~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~~-~~~l~~SAT~~~~- 313 (565)
++-++..+...+.. +.++++||||++.++.... ....+..++....+. ..++.+|||....
T Consensus 238 ------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 ------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred ------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 12234444444432 3468999999999865321 123455566655433 3578899998644
Q ss_pred HHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008430 314 IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 362 (565)
+...+..+-.-. --..++.+++...+.-.++..+..
T Consensus 302 ~~~~~~~~~~~~-------------~~~~I~TKlDet~~~G~~l~~~~~ 337 (388)
T PRK12723 302 VKEIFHQFSPFS-------------YKTVIFTKLDETTCVGNLISLIYE 337 (388)
T ss_pred HHHHHHHhcCCC-------------CCEEEEEeccCCCcchHHHHHHHH
Confidence 333444442110 112235555555565566665544
No 214
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.03 E-value=0.0023 Score=70.83 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=90.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcC----------CCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceE
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT----------PVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~----------~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
.|++++++-.+|.|||..-+...+....... ......-+..|||+|. +|..||..++.+-... .+++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv 449 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKV 449 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceE
Confidence 4567899999999999875433332211100 0011123458999995 8999999999988764 3566
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC--------------CCC------CceEEEecchhHhhcCCC
Q 008430 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--------------SLS------RVSFVILDEADRMLDMGF 286 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~--------------~~~------~~~~iIiDE~H~~~~~~~ 286 (565)
..+.|-.+..-......-.+|||+||+..|...+..... .+. .|=-|++|||+.+-..
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess-- 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS-- 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--
Confidence 666653221111111223599999999999655543311 010 1334899999976532
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeecChHH
Q 008430 287 EPQIREVMQNLPDKHQTLLFSATMPVEI 314 (565)
Q Consensus 287 ~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 314 (565)
.....+++..++. ...=++|+||-..+
T Consensus 528 sS~~a~M~~rL~~-in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHA-INRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHHHhhh-hceeeecCCchhhh
Confidence 3334444444443 33688999985553
No 215
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.01 E-value=0.0053 Score=58.03 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecC
Q 008430 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 265 ~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.+...|+.||+||||.|.... ...++++++.+....++++.+.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 456678999999999887442 3456778888777777788776653
No 216
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0064 Score=60.12 Aligned_cols=42 Identities=14% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHhHhCCC----CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVALSGR----DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~----~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
.++|||...+..+.... -.|+.||.|.|||..+ ..+...++.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcC
Confidence 35899999999887543 2789999999999876 555555554
No 217
>PHA02533 17 large terminase protein; Provisional
Probab=96.94 E-value=0.0079 Score=63.41 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|.|+|++.+..+..++-.++..+=..|||.+.+..++..+... .+..+++++|+..-+..+.+.++......+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 68999999998886666678888899999998765444444332 256899999999999988888887665433
Q ss_pred Cc-eEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC--
Q 008430 223 SF-KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-- 299 (565)
Q Consensus 223 ~~-~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~-- 299 (565)
.+ .......+. ....+.++..|.+.|.+. ....-..+.++||||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~i~~~~~----~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEWNK----GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeecCc----cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 21 111111100 000123445554444221 011122467899999997643 23333444433332
Q ss_pred CCcEEEEEeec
Q 008430 300 KHQTLLFSATM 310 (565)
Q Consensus 300 ~~~~l~~SAT~ 310 (565)
..+++.+|.+.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23444444443
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.014 Score=55.01 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
..+++.|++|+|||..+ ..+...+... +..++|+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~-------g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLR-------GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEE
Confidence 36899999999999876 4555555542 5567666
No 219
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.92 E-value=0.0054 Score=67.97 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++-|++|+... ...++|.|..|||||.+...-+ .+++..... ...++|+|+-|+..+.++.+++.++++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRI-AWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 36899999999753 4579999999999999864443 444443211 24579999999999999999988876310
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC---CCCCCceEEEecchhH
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN---TSLSRVSFVILDEADR 280 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~---~~~~~~~~iIiDE~H~ 280 (565)
...+.|+|...|...+.+.. ..+. -++-|+|+.+.
T Consensus 77 -----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 -----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred -----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 02467899998865443321 1111 13457787764
No 220
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.91 E-value=0.017 Score=62.79 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=17.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
++|.|+||+|||.+. -.++..+.
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHH
Confidence 359999999999986 44555544
No 221
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.90 E-value=0.0053 Score=68.00 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++-|++|+... ...++|.|..|||||.+...-+ .+++..... .+.++|+|+-|+..+.++.+++.++++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ri-a~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRI-AWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 35899999999753 4579999999999999864443 344443211 24569999999999999999998876310
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC---CCCCCceEEEecchhH
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN---TSLSRVSFVILDEADR 280 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~---~~~~~~~~iIiDE~H~ 280 (565)
...+.|+|...|...+.+.. ..+ .-++-|+|+.+.
T Consensus 82 -----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 82 -----------------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDDQ 119 (721)
T ss_pred -----------------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 02467899998865443321 111 123457787763
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.89 E-value=0.011 Score=56.81 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
+.++++.|++|+|||..+ ..+...+... .+..++|+.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEEH-HHHHHH
Confidence 567999999999999875 5555555442 1555777664 344443
No 223
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.012 Score=55.55 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=30.4
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
.++++.|++|+|||..+ ..+...+... +..++|+ +..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIVV-TVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEEE-EHHHHHHHHHHH
Confidence 56899999999999875 5555555542 4455554 445666655443
No 224
>PRK08116 hypothetical protein; Validated
Probab=96.89 E-value=0.014 Score=56.18 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=29.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~ 212 (565)
.+++.|++|+|||..+ ..+...+... +..++++. ..+|+.++..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~-------~~~v~~~~-~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK-------GVPVIFVN-FPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEE-HHHHHHHHHH
Confidence 4999999999999876 5566666653 44455554 4455554433
No 225
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.88 E-value=0.0041 Score=68.08 Aligned_cols=71 Identities=23% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.|++-|++|+... ...++|.|..|||||.+...-+ .+++..... .+.++|+|+.|+..+.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ri-a~Li~~~~v---~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKI-AHLIRGCGY---QARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHhcCC---CHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999999763 4578999999999999864444 444432111 245799999999999999998888763
No 226
>PRK08727 hypothetical protein; Validated
Probab=96.83 E-value=0.0062 Score=57.38 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=23.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
.+++.|++|+|||... ..+...+.. .+.+++|+.
T Consensus 43 ~l~l~G~~G~GKThL~-~a~~~~~~~-------~~~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLA-LALCAAAEQ-------AGRSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEe
Confidence 4899999999999765 334444333 255677765
No 227
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.021 Score=56.04 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHhHh----CCC---CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~----~g~---~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~ 214 (565)
..++|||..++..+. .|+ -.|+.||.|+||+..+ ..+...++...... .. -+ ..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~---~~----~c----------~~c 64 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDP---AA----AQ----------RTR 64 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCC---CC----cc----------hHH
Confidence 467999999998876 344 3789999999999876 55666666532110 00 01 111
Q ss_pred HHHh-hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHH
Q 008430 215 KALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (565)
Q Consensus 215 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i 293 (565)
+.+. +.++++.......+.... .....|.|-..-.+.+.+.... .....+++|||++|.|.... ...+.++
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKt 136 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKT 136 (319)
T ss_pred HHHhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHH
Confidence 1111 222333322101110000 0001122222222333332221 22358999999999986432 4556666
Q ss_pred HHhCCCCCcEEEEEeec
Q 008430 294 MQNLPDKHQTLLFSATM 310 (565)
Q Consensus 294 ~~~~~~~~~~l~~SAT~ 310 (565)
++--+++..+|++|..+
T Consensus 137 LEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 137 LEEPSPGRYLWLISAQP 153 (319)
T ss_pred hhCCCCCCeEEEEECCh
Confidence 76666666566665544
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.014 Score=58.32 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=77.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC-CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG-PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~-~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
|..++++||||+|||.+..- +...+... .| .++.+++ ....-.-..+.++.+.... ++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiak-LA~~~~~~------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~~--------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK-LAARCVMR------FGASKVALLT-TDSYRIGGHEQLRIFGKIL-GVPVH--------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHh------cCCCeEEEEe-cccccccHHHHHHHHHHHc-CCceE---------
Confidence 45689999999999987633 33332221 12 3455544 2222111223333333221 22222
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-CHHHHHHHHHhCCCCCcEEEEEeecChHH-
Q 008430 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEI- 314 (565)
Q Consensus 237 ~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~- 314 (565)
.+.+++.+...+. .+.+.++|+||++=+..... ....+..+.....+...++.++||...+.
T Consensus 199 ------------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 199 ------------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ------------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 2233333333332 23457899999996542111 12223333222223344788899986554
Q ss_pred HHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008430 315 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 363 (565)
.+.+..|........ .....--..++.+++...+.-.++..+...
T Consensus 263 ~evi~~f~~~~~~p~----~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~ 307 (374)
T PRK14722 263 NEVVQAYRSAAGQPK----AALPDLAGCILTKLDEASNLGGVLDTVIRY 307 (374)
T ss_pred HHHHHHHHHhhcccc----cccCCCCEEEEeccccCCCccHHHHHHHHH
Confidence 334444432100000 000001123455666666666666665543
No 229
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.80 E-value=0.011 Score=68.96 Aligned_cols=65 Identities=23% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
..+++-|++|+..++.. +-++|.|..|+|||.+. -.++..+... ....+.+++.++||-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHH
Confidence 37899999999999865 55899999999999874 2222222110 011356799999987666544
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=96.77 E-value=0.0093 Score=56.18 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred CceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecC
Q 008430 269 RVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
..+++|||++|.+... .....+..+++.+......+++|++-+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 4678999999977533 223445566655544333556666543
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.026 Score=57.92 Aligned_cols=128 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHH-hcCCCCCCCCCeEEEEc--cchhhHHHHHHHHHHHhhcCCCceEEEEECCCC
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCV-AQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~-~~~~~~~~~~~~~lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (565)
++.++++||||+|||.+.+- +...+. .. .+.++.+|. |.+.-+. +.++.+.... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~k-LA~~~~~~~------~g~~V~li~~D~~r~~a~---eqL~~~a~~~-~vp~-------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK-LAARYALLY------GKKKVALITLDTYRIGAV---EQLKTYAKIM-GIPV-------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHhc------CCCeEEEEECCccHHHHH---HHHHHHHHHh-CCce--------
Confidence 45688999999999987543 222222 11 244565554 2222222 2233332211 1111
Q ss_pred HHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcC-CCHHHHHHHHHhC-CCCCcEEEEEeecCh
Q 008430 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNL-PDKHQTLLFSATMPV 312 (565)
Q Consensus 235 ~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~-~~~~~~l~~SAT~~~ 312 (565)
.++.++..+...+.. +.++++||||.+-+.... .....+..++... .+...++.++||...
T Consensus 282 -------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 -------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred -------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 112334444444432 235899999998653221 1223455555522 223347889999875
Q ss_pred H-HHHHHHHH
Q 008430 313 E-IEALAQEY 321 (565)
Q Consensus 313 ~-~~~~~~~~ 321 (565)
. +......|
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 4 34444444
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0092 Score=56.79 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=34.7
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
+++++++.|++|+|||..+ .++...+.. .|.+|+|+ +..+++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~-------~g~sv~f~-~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK-------AGISVLFI-TAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH-------cCCeEEEE-EHHHHHHHHHHHHh
Confidence 6678999999999999987 555555553 25555554 45677776655444
No 233
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0096 Score=56.22 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHcCceEEecCCC-------------------CCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHH
Q 008430 89 LRFNPEQIEEVRLRLNVDVTVASGS-------------------VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQA 149 (565)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~ 149 (565)
.-+++.+.+.+.+....+....-.+ ..+|..+.+|+++++++-+.+-+
T Consensus 55 ~il~~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~------------- 121 (353)
T COG2805 55 EILNDDQRKILEENGELDFSYTLPGVARFRVNAFKQRGGYALVLRLIPSKIPTLEELGLPPIVRELA------------- 121 (353)
T ss_pred HHhCHHHHHHHHHhcceeEEEecCCcceEEeehhhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHH-------------
Confidence 3456666666666655544332211 34678889999999988655432
Q ss_pred HHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhc
Q 008430 150 QAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 150 ~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~ 186 (565)
... =+||.||||||||.+. ..++.++...
T Consensus 122 -------~~~~GLILVTGpTGSGKSTTl-AamId~iN~~ 152 (353)
T COG2805 122 -------ESPRGLILVTGPTGSGKSTTL-AAMIDYINKH 152 (353)
T ss_pred -------hCCCceEEEeCCCCCcHHHHH-HHHHHHHhcc
Confidence 222 2899999999999774 5666665543
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.028 Score=56.00 Aligned_cols=155 Identities=16% Similarity=0.206 Sum_probs=78.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--ch-hhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP--TR-ELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P--~~-~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (565)
+.++++||||+|||..... +...+.. .+.++.++.- .+ ..+.|+. .+.... +
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~-------~GkkVglI~aDt~RiaAvEQLk----~yae~l-g------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHG-------KKKTVGFITTDHSRIGTVQQLQ----DYVKTI-G------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHH-------cCCcEEEEecCCcchHHHHHHH----HHhhhc-C------------
Confidence 4578999999999987533 3333332 2555665553 22 2333333 332111 1
Q ss_pred HHHHHHHhCCCcEE-EEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-CHHHHHHHHHhCCCCCcEEEEEeecCh-
Q 008430 236 AEQRSELRGGVSIV-VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPV- 312 (565)
Q Consensus 236 ~~~~~~~~~~~~il-v~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~- 312 (565)
+.++ ..++..+.+.+..-.- ..++++|+||-+=+..... ....+..++....+..-++.+|||...
T Consensus 297 ----------ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 297 ----------FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred ----------CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 2222 3355666554432110 1247999999987644321 223344555544444446778987654
Q ss_pred HHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008430 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 362 (565)
++...+..|-..+ --..++.+++...+.-.++..+..
T Consensus 366 d~~~i~~~F~~~~-------------idglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 366 DMIEIITNFKDIH-------------IDGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred HHHHHHHHhcCCC-------------CCEEEEEcccCCCCccHHHHHHHH
Confidence 4455555543211 112235555555555555555544
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.63 E-value=0.018 Score=62.85 Aligned_cols=109 Identities=24% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.-..|++-|++|+..- ..+++|.|..|||||.+. +.-+.+++.... ..+.++|+++.++..+..+.+++...++
T Consensus 193 e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl-~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVL-VARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHH-HHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 3357999999999653 346899999999999986 444444444321 1355799999999999988888877642
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHH-HcCCCCCCCceEEEecchh
Q 008430 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l-~~~~~~~~~~~~iIiDE~H 279 (565)
. .+|-|+|...|...+ .........+.-+..|+..
T Consensus 267 ~-------------------------~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 267 T-------------------------EDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred C-------------------------CCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 0 246788888886433 3221112234444556543
No 236
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.61 E-value=0.0039 Score=59.14 Aligned_cols=79 Identities=16% Similarity=0.407 Sum_probs=58.0
Q ss_pred HHHHHhhcCCceEEEEcCcccCCCCccC--------ccEEEEcCCCCCcccceecccccccCCCc-eeEEEEeccc---c
Q 008430 415 SALRDFRNGSTNILVATDVASRGLDVMG--------VAHVVNLDLPKTVEDYVHRIGRTGRGGSM-GQATSFYTDR---D 482 (565)
Q Consensus 415 ~~~~~f~~g~~~vLv~T~~~~~Gidip~--------v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~-g~~~~~~~~~---~ 482 (565)
...+.|.+|+.+|+|.+++.+.|+.+.. -++-|.+.+|||....+|+.||++|.|+. ...+.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998753 22447889999999999999999999984 3334433332 4
Q ss_pred HHHHHHHHHHH
Q 008430 483 MLLVAQIKKAI 493 (565)
Q Consensus 483 ~~~~~~l~~~~ 493 (565)
..+..-+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 237
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.61 E-value=0.017 Score=68.40 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 142 TRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..+++.|++|+..++.+. -++|.|..|+|||.+. -.++..+... ....+.+++.++||-.-+.++. ..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~----e~-- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR----SA-- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh---hcccCceEEEECCcHHHHHHHH----hc--
Confidence 468999999999999754 5889999999999864 3333332211 0113567899999977665432 21
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHH----HcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHH
Q 008430 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL----QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l----~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
++. -.|..+|+... .........-++|||||+=++. ...+..++.
T Consensus 1036 ---Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~ 1084 (1747)
T PRK13709 1036 ---GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYA 1084 (1747)
T ss_pred ---Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHH
Confidence 111 11222222110 0011122245899999999776 455666666
Q ss_pred hCCC-CCcEEEEEee
Q 008430 296 NLPD-KHQTLLFSAT 309 (565)
Q Consensus 296 ~~~~-~~~~l~~SAT 309 (565)
..+. ..++|++.=+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 6653 5677776544
No 238
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.59 E-value=0.0013 Score=75.76 Aligned_cols=93 Identities=27% Similarity=0.371 Sum_probs=77.8
Q ss_pred EEEEecccchHHHHHHHHHHcCC-ceeEecCCCC-----------HHHHHHHHHHhhcCCceEEEEcCcccCCCCccCcc
Q 008430 377 TIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN-----------QSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~ 444 (565)
.++||+.+..+..+.+.+.+.+. .+..+.|.+. ...+.+++..|...++++|++|.++.+|+|+|.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 89999999999888888877632 3333444432 22367899999999999999999999999999999
Q ss_pred EEEEcCCCCCcccceecccccccCC
Q 008430 445 HVVNLDLPKTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 445 ~Vi~~~~~~s~~~~~Q~~GR~~R~g 469 (565)
.|+.++.|.....|+|..||+-+.+
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997754
No 239
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.56 E-value=0.064 Score=53.40 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=82.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc-hhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT-RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~-~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
++.+.++||||.|||.+.+=-+....+.. ++....||-+.+ |-=|..+.+.+.+++ ++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA~EQLk~Ya~im----~vp~---------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGAVEQLKTYADIM----GVPL---------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhHHHHHHHHHHHh----CCce----------
Confidence 56688999999999987533222222111 123334444433 222332333333333 1222
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChH-H
Q 008430 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVE-I 314 (565)
Q Consensus 237 ~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~-~ 314 (565)
.++-+|.-|...+. .+.++++|.||=+-+-... .....+...+..-.+-...|.+|||.... +
T Consensus 264 -----------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 264 -----------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -----------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 24556666665554 3556799999988754322 12334444554444444578889998544 4
Q ss_pred HHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008430 315 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 362 (565)
...+..|-.-++. ..++.+++.....-.++..+.+
T Consensus 329 kei~~~f~~~~i~-------------~~I~TKlDET~s~G~~~s~~~e 363 (407)
T COG1419 329 KEIIKQFSLFPID-------------GLIFTKLDETTSLGNLFSLMYE 363 (407)
T ss_pred HHHHHHhccCCcc-------------eeEEEcccccCchhHHHHHHHH
Confidence 5555555332221 1234445555555555555544
No 240
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.56 E-value=0.025 Score=49.84 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=29.8
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecC
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
...+++||||+|.|.... ...+.++++.-+....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 468999999999886432 5567777777777776666666553
No 241
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.55 E-value=0.021 Score=67.01 Aligned_cols=123 Identities=24% Similarity=0.226 Sum_probs=80.3
Q ss_pred CCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCC
Q 008430 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~ 223 (565)
.|+-|.+||.. .+++++|.|.-|||||.+..--++..+... ....++|+|+=|+..+.++.+++++.+...
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-- 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-- 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH--
Confidence 58899999984 678999999999999998755555554432 123459999999999999999988876532
Q ss_pred ceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCC--ceEEEecchhH
Q 008430 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR--VSFVILDEADR 280 (565)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~--~~~iIiDE~H~ 280 (565)
+. ...........+..-...-|+|...|+..+.+.....-+ ..+=|.||...
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 10 011112222233333456799999997665554322111 24456888874
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.54 E-value=0.033 Score=48.88 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=25.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
+++.|++|+|||..+ ..++..... .+..++|+.....+.
T Consensus 2 ~~i~G~~G~GKT~l~-~~i~~~~~~-------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLA-LQLALNIAT-------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHH-HHHHHHHHh-------cCCEEEEEECCcchH
Confidence 589999999999875 333333332 256677777654443
No 243
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.50 E-value=0.0076 Score=56.47 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=62.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCC-CHHHHHHHHh-CCCcEEEEccHHHHHHHHcCCCCCCCc
Q 008430 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRV 270 (565)
Q Consensus 193 ~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~ 270 (565)
..|.+|||+..--=+..+.+.++.+-. .+..++-+..-. ...++...+. ...+|.||||+++..++..+.+.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 468899999876556666666665521 123344444433 5666666665 469999999999999999999999999
Q ss_pred eEEEecchhH
Q 008430 271 SFVILDEADR 280 (565)
Q Consensus 271 ~~iIiDE~H~ 280 (565)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 244
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.016 Score=57.06 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=23.6
Q ss_pred eEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 271 SFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 271 ~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
-+++|||+|++. ..+-..++.++... .++++.||=
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~vE~G-~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHVENG-TIILIGATT 140 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhhcCC-eEEEEeccC
Confidence 468999999975 33334455555544 488888885
No 245
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.023 Score=56.25 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=30.8
Q ss_pred CCHHHHHHHHhHhC--CC---CEEEEccCCChhHHHHHHHHHHHHHhc
Q 008430 144 PTSIQAQAMPVALS--GR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~--g~---~~li~a~TGsGKT~~~~l~~l~~~~~~ 186 (565)
++|||...+..+.. ++ -.|+.||.|.||+..+ ..+...++..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCC
Confidence 37888888887763 33 3789999999999876 5555666553
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.48 E-value=0.03 Score=50.69 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=32.9
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
++|.|++|+|||...+ -++..... +|.+++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~-~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFAL-QFLYAGLA-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999998763 33333333 3667888875 45567777666654
No 247
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.48 E-value=0.021 Score=53.83 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=23.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
..+++.||+|+|||... ..+...+.. .+.+++|+.-
T Consensus 46 ~~l~l~Gp~G~GKThLl-~a~~~~~~~-------~~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL-HAACAELSQ-------RGRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEEH
Confidence 56899999999999764 333333332 2556777654
No 248
>PRK06893 DNA replication initiation factor; Validated
Probab=96.45 E-value=0.012 Score=55.33 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=25.8
Q ss_pred CceEEEecchhHhhcCC-CHHHHHHHHHhCCC-CCcEEEEEeecCh
Q 008430 269 RVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPV 312 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~ 312 (565)
..++|||||+|.+.... ....+..++..... ..+++++|++.++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 57899999999875322 22234444444432 3456677776543
No 249
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.41 E-value=0.027 Score=52.80 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..+++.|++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3457999999999999876
No 250
>PHA00729 NTP-binding motif containing protein
Probab=96.37 E-value=0.025 Score=52.11 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=36.4
Q ss_pred cEEEEccHHHHHHHHcCCCCCCCceEEEecch--hHhhcCCCH----HHHHHHHHhCCCCCcEEEEEeecChHHHHHHHH
Q 008430 247 SIVVATPGRFLDHLQQGNTSLSRVSFVILDEA--DRMLDMGFE----PQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 320 (565)
Q Consensus 247 ~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~--H~~~~~~~~----~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 320 (565)
..+|.+.+.+...+....-.....+++||||+ |.+. ..+. ..+..+...+...++++.+...-+..+...+..
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~-~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSK-YVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcc-cchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 44555556555555321111224578999993 2211 0011 122334444444566777776666666655554
No 251
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.33 E-value=0.034 Score=54.98 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
.+.++++.|+||+|||..+ ..+...+... |..|+|+.- .+|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~-------g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR-------GKSVIYRTA-DELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC-------CCeEEEEEH-HHHHHHH
Confidence 3467999999999999875 5556666542 556766653 4555544
No 252
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.30 E-value=0.039 Score=54.74 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.7
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++|||||+|.+........+..++...+...++++.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998833323445666677766666555533
No 253
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.27 E-value=0.064 Score=56.01 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=28.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
+.+++.||+|+|||... ..+...+.... .+.+++++.. .++..+.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN-----PNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHH
Confidence 35899999999999875 44555544421 2455666644 4555443
No 254
>PLN03025 replication factor C subunit; Provisional
Probab=96.27 E-value=0.044 Score=54.41 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=25.5
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
..++|||||+|.+.... ...+.+++...+....++ ++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeCC
Confidence 57899999999886432 344566666655555444 44443
No 255
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.26 E-value=0.02 Score=63.75 Aligned_cols=109 Identities=23% Similarity=0.258 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++-|++|+... ...++|.|..|||||.+..--+ .+++..... .+.++|+++-|+..+..+.+++.++++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ri-a~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~~- 75 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRI-AHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLGP- 75 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHH-HHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhcc-
Confidence 35899999999763 4579999999999999864444 344443211 2456999999999999888888876531
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC---CCCCCceEEEecchhH
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN---TSLSRVSFVILDEADR 280 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~---~~~~~~~~iIiDE~H~ 280 (565)
...++.|+|...|...+.+.. ..+ .-++-|+|+.+.
T Consensus 76 ----------------------~~~~~~i~TFHs~~~~iLr~~~~~~g~-~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 ----------------------VAEDIWISTFHSMCVRILRRDIDRIGI-NRNFSIIDPTDQ 114 (726)
T ss_pred ----------------------ccCCcEEEcHHHHHHHHHHHHHHHhCC-CCCCCcCCHHHH
Confidence 012467899988865544321 111 123457787763
No 256
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.022 Score=58.85 Aligned_cols=108 Identities=15% Similarity=0.277 Sum_probs=58.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+.+++.|++|+|||... ..+...+.. .+.+++++.. ..+..+....++. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~-------~~~~v~yi~~-~~f~~~~~~~l~~---------------~------ 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE-------SGGKILYVRS-ELFTEHLVSAIRS---------------G------ 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCCEEEeeH-HHHHHHHHHHHhc---------------c------
Confidence 34899999999999865 445555443 2566787764 3444433322211 0
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-CHHHHHHHHHhC-CCCCcEEEEEeecChHHHH
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIEA 316 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~ 316 (565)
..+.+... +...++++|||+|.+.... ....+..++..+ ....++|+.|-++|..+..
T Consensus 192 -------------~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 192 -------------EMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred -------------hHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 00111111 2357899999999876432 123333444333 2345566666566655543
No 257
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.043 Score=58.32 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
..++++||||+|+|....+ +.+.++++.-+....+|+.|--+
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCCh
Confidence 4689999999999874432 33444555445555555554433
No 258
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.22 E-value=0.012 Score=61.78 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHHHHhHh-----CC----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 146 SIQAQAMPVAL-----SG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 146 ~~Q~~~l~~l~-----~g----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
|+|+-.+..++ .| +.+++.-|=|-|||......++..+.-. ...+..+++++++++-+...++.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 67887777776 22 2478888999999987655555554432 12367799999999999999999999
Q ss_pred HhhcCC
Q 008430 217 LSRSLD 222 (565)
Q Consensus 217 ~~~~~~ 222 (565)
+....+
T Consensus 77 ~i~~~~ 82 (477)
T PF03354_consen 77 MIEASP 82 (477)
T ss_pred HHHhCh
Confidence 886543
No 259
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.052 Score=57.17 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|++.... ...+.+.+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 358999999999887443 334555666655566555544
No 260
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.21 E-value=0.023 Score=54.43 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHh-cCCCCC---CCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCC
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGR---GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~-~~~~~~---~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (565)
.+++++|+||-|||.+. ++... .+.... ..-|.+++-+|...-....+..+-..++.. .. ....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--~~-----~~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP--YR-----PRDR 129 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc--cC-----CCCC
Confidence 36999999999999853 22222 221111 123556677777776666666665554321 11 1111
Q ss_pred HHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHH--HHHHHHHhCCCC--CcEEEEEeec
Q 008430 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP--QIREVMQNLPDK--HQTLLFSATM 310 (565)
Q Consensus 235 ~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~--~~~~i~~~~~~~--~~~l~~SAT~ 310 (565)
...... ....++.. -..+++||||+|+++..+... .....++.+.+. ..+|++ +|.
T Consensus 130 ~~~~~~--------------~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt~ 189 (302)
T PF05621_consen 130 VAKLEQ--------------QVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GTR 189 (302)
T ss_pred HHHHHH--------------HHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-ccH
Confidence 111110 01122221 257899999999987654322 233444555443 335544 454
No 261
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.055 Score=53.24 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCHHHHHHHHhHh----CCC---CEEEEccCCChhHHHHHHHHHHHHHhc
Q 008430 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 144 ~~~~Q~~~l~~l~----~g~---~~li~a~TGsGKT~~~~l~~l~~~~~~ 186 (565)
.+|||+..+..+. +|+ -.|+.||.|.||+..+ ..+...++..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcCC
Confidence 4677777777665 444 3679999999999876 5566666553
No 262
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.051 Score=58.61 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
..++++||||+|+|.... ...+.++++..++...+|+ ++|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEE-EEC
Confidence 358999999999887543 3345556666555554444 444
No 263
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.12 E-value=0.038 Score=67.28 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHhHhCCC--CEEEEccCCChhHHHHH--HHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 142 TRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFT--IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~--l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
..+++.|++|+..++.+. -++|.|..|+|||.+.. +..+..+... .+.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHH
Confidence 468999999999988664 47889999999998641 1222222222 367799999997665544
No 264
>PF13173 AAA_14: AAA domain
Probab=96.10 E-value=0.06 Score=45.33 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=24.8
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
.-.+|+|||+|.+.+ +...+..+.+.. ++.++++ |++.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~-tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIIL-TGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEE-Eccc
Confidence 457899999999854 466667776655 3454444 4443
No 265
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.14 Score=53.33 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.2
Q ss_pred CCCCEEEEccCCChhHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~ 176 (565)
.|+.+.++|+||+|||.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45568899999999998753
No 266
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.07 E-value=0.074 Score=44.78 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.3
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+|+.||.|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999865
No 267
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.04 E-value=0.079 Score=54.64 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=22.9
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...+|+|||+|++. ......++..+.. ..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~----~~~q~~LL~~le~-~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFN----KAQQDALLPHVED-GTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhC----HHHHHHHHHHhhc-CcEEEEEeCC
Confidence 45789999999875 2333444444443 3466666664
No 268
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.03 E-value=0.069 Score=50.12 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=24.3
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCc-EEEEEeecC
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ-TLLFSATMP 311 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~-~l~~SAT~~ 311 (565)
..++|||||+|.+.... ...+..++........ +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46789999999875332 3334444544332333 466676654
No 269
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.00 E-value=0.048 Score=56.60 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=31.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
.+++.|++|+|||... ..+...+.... .+.+++++.. .++..+....+.
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHH
Confidence 4889999999999764 44444444321 2556777666 566665555443
No 270
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.99 E-value=0.28 Score=51.65 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=71.9
Q ss_pred eEEEEecccchHHHHHHHHHHcCCc-------eeEecCCCCHHHHHHHHHHhh----cCCceEEEEc--CcccCCCCccC
Q 008430 376 LTIVFVERKTRCDEVSEALVAEGLH-------AVALHGGRNQSDRESALRDFR----NGSTNILVAT--DVASRGLDVMG 442 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T--~~~~~Gidip~ 442 (565)
-+++|+++.+....+.+...+.|+- .+.+-...+ -..+++.+. .|.-.+|+++ .-+++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 4999999999999999998876652 222222222 345555554 3555677766 68999999987
Q ss_pred --ccEEEEcCCCCC--------------------c------------ccceecccccccCCCceeEEEEeccc
Q 008430 443 --VAHVVNLDLPKT--------------------V------------EDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 443 --v~~Vi~~~~~~s--------------------~------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
++.||+.+.|.. + ....|-+|||-|+-++=.++++++.+
T Consensus 708 ~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred ccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 788999888742 0 01268889999987777777777654
No 271
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.99 E-value=0.036 Score=51.62 Aligned_cols=107 Identities=19% Similarity=0.296 Sum_probs=59.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.+++.|++|+|||-.. ..+...+.... .+.+++++... +........++.
T Consensus 36 ~l~l~G~~G~GKTHLL-~Ai~~~~~~~~-----~~~~v~y~~~~-~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLL-QAIANEAQKQH-----PGKRVVYLSAE-EFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHHHHC-----TTS-EEEEEHH-HHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHHH-HHHHHHHHhcc-----ccccceeecHH-HHHHHHHHHHHc-----------------------
Confidence 4899999999999853 55555555432 25567777653 444433333322
Q ss_pred HHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-CHHHHHHHHHhCC-CCCcEEEEEeecChHH
Q 008430 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEI 314 (565)
Q Consensus 240 ~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~ 314 (565)
...+.+.+. +...++++||++|.+.... ....+..+++.+. .+.++|+.|..+|..+
T Consensus 86 -----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 001122222 2258999999999876431 1233344444442 3456777776776654
No 272
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.99 E-value=0.098 Score=55.60 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=81.3
Q ss_pred CHHHHHHHHhHh---CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 145 TSIQAQAMPVAL---SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 145 ~~~Q~~~l~~l~---~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
+|.=.+-|+.+. +.+-.++.+|=|.|||.+..+.+. .+... .+.++++.+|...-+.++++.++..+...
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 443333344433 344578889999999987644333 33321 26779999999999999999888888632
Q ss_pred C------C-ceEEEEECCCCH-H--HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHH
Q 008430 222 D------S-FKTAIVVGGTNI-A--EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR 291 (565)
Q Consensus 222 ~------~-~~~~~~~g~~~~-~--~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 291 (565)
. . ..+..+.|+... . .......+...|.+++.. .+...-..++++|+|||+.+. ...+.
T Consensus 244 g~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~----~~~l~ 312 (752)
T PHA03333 244 QHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVN----PGALL 312 (752)
T ss_pred ccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCC----HHHHH
Confidence 1 1 111222222110 0 000000011234443322 112222357999999999776 34455
Q ss_pred HHHHhCC-CCCcEEEEEeec
Q 008430 292 EVMQNLP-DKHQTLLFSATM 310 (565)
Q Consensus 292 ~i~~~~~-~~~~~l~~SAT~ 310 (565)
.++..+. ...+++++|.+-
T Consensus 313 aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 313 SVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHccCCCceEEEeCCC
Confidence 5555544 345577777765
No 273
>PRK09183 transposase/IS protein; Provisional
Probab=95.97 E-value=0.043 Score=52.50 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=28.8
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
+..+.++++.||+|+|||..+.. +...+.. .|..++|+.- .+|..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a-l~~~a~~-------~G~~v~~~~~-~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA-LGYEAVR-------AGIKVRFTTA-ADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH-HHHHHHH-------cCCeEEEEeH-HHHHH
Confidence 45678899999999999987633 3322222 2556777642 34444
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.97 E-value=0.017 Score=55.47 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.++++.||+|+|||.++
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999876
No 275
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.94 E-value=0.085 Score=58.64 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=25.8
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|+|.... ...+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 468999999999987433 344556666656555445444
No 276
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.94 E-value=0.042 Score=56.42 Aligned_cols=145 Identities=13% Similarity=0.233 Sum_probs=81.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh-hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~-L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.++.|..|||||.+.++-++..++... .+.+++++-++.. |..-+...+...+... ++....-...... ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM--EI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc--EE
Confidence 578999999999998888887777641 2566888888876 6677777777666543 2211111111000 00
Q ss_pred HHHhCCCcEEEEcc-HHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC--CCcEEEEEeecChHHHH
Q 008430 240 SELRGGVSIVVATP-GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEA 316 (565)
Q Consensus 240 ~~~~~~~~ilv~T~-~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~ 316 (565)
.....+..|+|..- +...+ + .....++++.||||..+.. ..+..++..++. ....+.+|.+|.....-
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 00111345666544 22211 1 1223368999999998753 344444444432 22248889998654333
Q ss_pred HHHHHc
Q 008430 317 LAQEYL 322 (565)
Q Consensus 317 ~~~~~~ 322 (565)
+...+.
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 333443
No 277
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.94 E-value=0.082 Score=54.80 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=27.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
.+++.|++|+|||..+ ..+...+.... .+.+++|+.. ..+..+
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~~-----~~~~v~yi~~-~~f~~~ 174 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQNE-----PDLRVMYITS-EKFLND 174 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHH
Confidence 5899999999999875 44555554421 2456777764 334333
No 278
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.077 Score=52.71 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHhHh----CCC---CEEEEccCCChhHHHHHHHHHHHHHhc
Q 008430 143 RPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~---~~li~a~TGsGKT~~~~l~~l~~~~~~ 186 (565)
.++|||...+..+. .|+ -.|+.||.|.||+..+ ..+...++..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 35788888888775 344 3789999999999876 5566666553
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.93 E-value=0.064 Score=55.25 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=26.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
.+++.|++|+|||... ..+...+.... .+.+++++.. ..+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~-----~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN-----PNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCcEEEEEH-HHHHH
Confidence 4789999999999875 44555554421 2456777753 34443
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.93 E-value=0.037 Score=55.49 Aligned_cols=39 Identities=13% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...++|||||+|.+... ....+..++...++..++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987532 2334556666666566555543
No 281
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.09 Score=51.60 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHhHh----CCC---CEEEEccCCChhHHHHHHHHHHHHHhc
Q 008430 143 RPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~---~~li~a~TGsGKT~~~~l~~l~~~~~~ 186 (565)
.++|||...+..+. .++ -.|+.||.|.||+..+ ..+...++..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 46788888887765 344 3889999999999765 5555665543
No 282
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.90 E-value=0.02 Score=51.33 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=30.4
Q ss_pred HhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 153 ~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
..+.+++++++.|++|+|||..+ ..+...+... |..++|+. ..+|..++
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f~~-~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLFIT-ASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEEE-HHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeEee-cCceeccc
Confidence 34446778999999999999986 5566666553 66677765 34565543
No 283
>PRK04195 replication factor C large subunit; Provisional
Probab=95.90 E-value=0.071 Score=56.18 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||.++
T Consensus 40 ~~lLL~GppG~GKTtla 56 (482)
T PRK04195 40 KALLLYGPPGVGKTSLA 56 (482)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999865
No 284
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.88 E-value=0.019 Score=61.11 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH-HHHHHHhh
Q 008430 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~-~~~~~~~~ 219 (565)
..+|||.+.++.+... +.+.++.++-+|||.+. +.++-..+.. ....+|++.|+.++++++. .++..++.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQ------DPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEe------CCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999999998754 46899999999999965 4444444443 2344999999999999887 56777776
Q ss_pred cCCCceEEEEE---CCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc----CC-CHHHHH
Q 008430 220 SLDSFKTAIVV---GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD----MG-FEPQIR 291 (565)
Q Consensus 220 ~~~~~~~~~~~---g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~----~~-~~~~~~ 291 (565)
..+.+...+.- ...........+. +..+.++...+-. .+.-..+++|++||++.... +| -.....
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~ 161 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAE 161 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCc------ccccCCcCEEEEechhhccccCccCCCHHHHHH
Confidence 55433321111 0111111111222 2334443322211 12233589999999998742 11 223333
Q ss_pred HHHHhCCCCCcEEEEEeecChH
Q 008430 292 EVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 292 ~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
.-...+... ..+++..||...
T Consensus 162 ~R~~tf~~~-~K~~~~STPt~~ 182 (557)
T PF05876_consen 162 KRTKTFGSN-RKILRISTPTIE 182 (557)
T ss_pred HHHhhhccC-cEEEEeCCCCCC
Confidence 333444222 356666677544
No 285
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.87 E-value=0.0049 Score=54.53 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=53.8
Q ss_pred EEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH
Q 008430 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE 241 (565)
Q Consensus 162 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 241 (565)
++.|+=|-|||.+.-+.+.. +... ...+++|.+|+.+-+...++.+...+... +.+.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~---~~~~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQK------GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKK---KRIGQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHh------cCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccc---ccccccccc
Confidence 57899999999764332221 1111 12469999999988887777666544322 1111000 000000001
Q ss_pred HhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 242 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 242 ~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
......|-+..|+.+... ....+++|||||=.+. .+.+.+++... ..++||.|.
T Consensus 70 ~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp ---CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred ccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeec
Confidence 112466777788777521 2245899999999765 66667775443 367778887
No 286
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.11 Score=55.89 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~ 306 (565)
..++++||||+|+|.... ...+.+++..-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 368899999999887443 33445555555555544444
No 287
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.81 E-value=0.066 Score=51.79 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=33.7
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
+..|.-+++.|++|+|||... ..++..+... .+..++|+.-. +-..++...+...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~-~~~~~~~~~~------~g~~vl~iS~E-~~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFL-REYALDLITQ------HGVRVGTISLE-EPVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHH-HHHHHHHHHh------cCceEEEEEcc-cCHHHHHHHHHHH
Confidence 345667899999999999765 3333333221 25668888743 3445555555443
No 288
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.80 E-value=0.084 Score=56.59 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
....++|||||+|.+.... ...+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3468999999999886432 334445555555555455544
No 289
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.76 E-value=0.029 Score=59.39 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=58.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.++|.|++|+|||... ..+...+.... .+.+++|+.- .+++.+....++. +
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~-----~g~~V~Yita-eef~~el~~al~~---------------~------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLY-----PGTRVRYVSS-EEFTNEFINSIRD---------------G------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEeeH-HHHHHHHHHHHHh---------------c-------
Confidence 3899999999999864 44444443311 2556777664 4555544333221 0
Q ss_pred HHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC-CHHHHHHHHHhCCC-CCcEEEEEeecChHHH
Q 008430 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIE 315 (565)
Q Consensus 240 ~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~ 315 (565)
..+.+... +.++++|||||+|.+.... ....+..+++.+.. +.++|+.|-.++.++.
T Consensus 367 ------------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 367 ------------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred ------------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 00111111 2247899999999876432 12233344444432 4567766665655543
No 290
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.11 Score=54.15 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=24.2
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
..++++||||+|.+.... ...+.+.+...++...++ +.+|-
T Consensus 115 ~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fI-latte 155 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFI-LATTE 155 (491)
T ss_pred CCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEE-EEeCC
Confidence 468999999999886433 233444445444444334 44443
No 291
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.66 E-value=0.013 Score=53.16 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=30.1
Q ss_pred CCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 265 ~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
.+....+.||+||||.|.+. -.+.+++.+....+..++.+..-+
T Consensus 109 lp~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 44567899999999988643 355677777776666655554443
No 292
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.66 E-value=0.052 Score=59.88 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=53.1
Q ss_pred CCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
|++-|++++.. ...+++|.|..|||||.+.+--+ .+++..... ...++|+|+.|+..+.++.+++.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri-~~ll~~~~~---~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKI-AYLIQNCGY---KARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHH-HHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78999999875 34579999999999999864444 444432111 245699999999999999999988765
No 293
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.1 Score=51.60 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=30.1
Q ss_pred CCHHHHHHHHhHhC--CC---CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 144 PTSIQAQAMPVALS--GR---DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~--g~---~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
++|||...+..+.. ++ -.|+.||.|.|||..+ ..+...++.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHcC
Confidence 37888888888773 33 3789999999999876 445555554
No 294
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.63 E-value=0.17 Score=51.66 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=31.1
Q ss_pred CceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 269 RVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.+++||||=+-+.... .....+..+.....+...++.++||...+....+..|
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 4788888887654321 1233445555555555557788888765554455444
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.04 Score=48.89 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=58.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
=.++.||+.+|||.-. +-.+..... .|.++++..|...- ..+ .-.+.--.|-
T Consensus 6 l~~i~gpM~SGKT~eL-l~r~~~~~~-------~g~~v~vfkp~iD~----------R~~---~~~V~Sr~G~------- 57 (201)
T COG1435 6 LEFIYGPMFSGKTEEL-LRRARRYKE-------AGMKVLVFKPAIDT----------RYG---VGKVSSRIGL------- 57 (201)
T ss_pred EEEEEccCcCcchHHH-HHHHHHHHH-------cCCeEEEEeccccc----------ccc---cceeeeccCC-------
Confidence 3688999999999864 333333333 37779999885431 110 0111111121
Q ss_pred HHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHh
Q 008430 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 240 ~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
...-++|-....+.+.+........ +++|.||||+-+. ...-..+.++.+.
T Consensus 58 ----~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~-~~~v~~l~~lad~ 108 (201)
T COG1435 58 ----SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFD-EELVYVLNELADR 108 (201)
T ss_pred ----cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCC-HHHHHHHHHHHhh
Confidence 1134566677777777765433322 8899999999654 2233344444444
No 296
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.61 E-value=0.099 Score=53.67 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.+++|.|++|+|||.+. -.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999875 44554443
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.61 E-value=0.14 Score=47.98 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|.-+++.|++|+|||..+ +-++..... ++.+++++... +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 4667899999999999875 333443333 25678888843 3345555555443
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.59 E-value=0.19 Score=51.66 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=31.4
Q ss_pred ceEEEecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 270 VSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 270 ~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++||||.+-+... ......+..+.....+..-++.+.|+...+....+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 48999999954321 11233455555555566667888888865554444443
No 299
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.14 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
++++.|+||+|||.+. --++..+..
T Consensus 44 n~~iyG~~GTGKT~~~-~~v~~~l~~ 68 (366)
T COG1474 44 NIIIYGPTGTGKTATV-KFVMEELEE 68 (366)
T ss_pred cEEEECCCCCCHhHHH-HHHHHHHHh
Confidence 6999999999999886 445555544
No 300
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.14 Score=52.81 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=16.2
Q ss_pred EEEEccCCChhHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~ 182 (565)
+|+.||.|+|||.++ ..+...
T Consensus 43 ~Lf~GP~GtGKTTlA-riLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIA-RILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHH-HHHHHh
Confidence 699999999999876 333333
No 301
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.54 E-value=0.11 Score=56.86 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=24.2
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecCh
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
...++||||+|++.. .....++..+. ..+++++++|-+.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCC
Confidence 457899999998752 22233444443 3457777777543
No 302
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.23 Score=47.00 Aligned_cols=170 Identities=14% Similarity=0.219 Sum_probs=90.3
Q ss_pred HHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCC-----CEEEEccCCC
Q 008430 95 QIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR-----DLLGCAETGS 169 (565)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~-----~~li~a~TGs 169 (565)
+-..++..++..+. ...|-..|++..=-+...++|+..=+... -+|.+..|+ .+|+.||.|+
T Consensus 111 e~kKLr~~L~sAIv-------~EKPNVkWsDVAGLE~AKeALKEAVILPI------KFPqlFtGkR~PwrgiLLyGPPGT 177 (439)
T KOG0739|consen 111 EKKKLRSALNSAIV-------REKPNVKWSDVAGLEGAKEALKEAVILPI------KFPQLFTGKRKPWRGILLYGPPGT 177 (439)
T ss_pred hHHHHHHHhhhhhh-------ccCCCCchhhhccchhHHHHHHhheeecc------cchhhhcCCCCcceeEEEeCCCCC
Confidence 34455555544332 23444556665333344455543221110 235566665 3899999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEE
Q 008430 170 GKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 249 (565)
Q Consensus 170 GKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il 249 (565)
||++.+ -++... .....|-+....|+..|+-+-.++.+.
T Consensus 178 GKSYLA-KAVATE-----------AnSTFFSvSSSDLvSKWmGESEkLVkn----------------------------- 216 (439)
T KOG0739|consen 178 GKSYLA-KAVATE-----------ANSTFFSVSSSDLVSKWMGESEKLVKN----------------------------- 216 (439)
T ss_pred cHHHHH-HHHHhh-----------cCCceEEeehHHHHHHHhccHHHHHHH-----------------------------
Confidence 999865 222222 113788888888988776665555431
Q ss_pred EEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC---CHHHHHHHH----HhC---C-CCCcEEEEEeecCh-HHHHH
Q 008430 250 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG---FEPQIREVM----QNL---P-DKHQTLLFSATMPV-EIEAL 317 (565)
Q Consensus 250 v~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~---~~~~~~~i~----~~~---~-~~~~~l~~SAT~~~-~~~~~ 317 (565)
|+.+...+ .-+.|.|||++.+.... -...-++|- -.+ . .+--++.+.||-.+ .+...
T Consensus 217 ------LFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 217 ------LFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred ------HHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 22333222 35689999999776321 122223332 222 1 23347788888533 34445
Q ss_pred HHHHcCCCeEEE
Q 008430 318 AQEYLTDPVQVK 329 (565)
Q Consensus 318 ~~~~~~~~~~~~ 329 (565)
+++-+...+.|.
T Consensus 286 IRRRFekRIYIP 297 (439)
T KOG0739|consen 286 IRRRFEKRIYIP 297 (439)
T ss_pred HHHHhhcceecc
Confidence 555555444443
No 303
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.23 Score=48.34 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.4
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||.|||||+++
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 56999999999999975
No 304
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.089 Score=52.98 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=30.6
Q ss_pred CceEEEecchhHhhcCC-CHHHHHHHHHhCCC-CCcEEEEEeecChHHH
Q 008430 269 RVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIE 315 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~ 315 (565)
.+++++||.++.+.... ....+-.++..+.. ..|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 58899999999887542 23334444444433 3478888877776654
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.11 Score=55.42 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=24.8
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 468999999999887443 334455555555555444444
No 306
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.42 E-value=0.11 Score=51.91 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccC-------CCCHHHHHHH-HHCCCCCCCHHHHHHH
Q 008430 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDM-------CLHPSIMKDI-EFHEYTRPTSIQAQAM 152 (565)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-------~l~~~i~~~l-~~~~~~~~~~~Q~~~l 152 (565)
+|.+++.-.-.++.++..+..+.+..+.+..- .|..-..|..+ +.+++....- .......++|.++..+
T Consensus 71 ~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r---~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~l 147 (416)
T PRK09376 71 NYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIR---PPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRL 147 (416)
T ss_pred CCCCCCCCeeeCHHHHHhcCCCCCCEEEEEee---CCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccc
Confidence 45555666667888999888888777764221 12211112111 3334333221 1122334455554444
Q ss_pred Hh-------------Hh---CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 153 PV-------------AL---SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 153 ~~-------------l~---~g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+. +. .|++.+|.||.|+|||..+ -.+...+.
T Consensus 148 e~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 148 ETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 33 22 6788999999999999754 33444433
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.21 Score=50.61 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCceEEEecchhHhhc-CCCHHHHHHHHHhCC---CCCcEEEEEeecChH-HHHHHHHH
Q 008430 268 SRVSFVILDEADRMLD-MGFEPQIREVMQNLP---DKHQTLLFSATMPVE-IEALAQEY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~-~~~~~~~~ 321 (565)
..+++||||=+-+... ......+..++.... +...++.++||.... +...+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4678999997654321 122344555555442 223478889998764 44444433
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.062 Score=57.23 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
..++++||||+|++.... ...+.+++...++...+|+ ++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 357899999999886433 3345555655555554444 444
No 309
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.34 E-value=0.16 Score=50.90 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
.+.+.+.|+.|.|||+. +.++...+.. . .+.| +|.-+...++.+.+.++- |+...
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~---~--~k~R----~HFh~Fm~~vh~~l~~~~------------~~~~~-- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPI---K--RKRR----VHFHEFMLDVHSRLHQLR------------GQDDP-- 116 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCc---c--cccc----ccccHHHHHHHHHHHHHh------------CCCcc--
Confidence 35689999999999985 5555443321 0 1222 344556666666666543 11110
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CCCCcEEEEEeecChHH
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 314 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~ 314 (565)
...+.+.+ .+...+|++||+|- .+-+-+-.+.+++..+ ....-+|..|-++|.++
T Consensus 117 ---------------l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 ---------------LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ---------------HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 01111222 22467899999993 3333233445555443 34566777788887765
No 310
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.34 E-value=0.14 Score=56.39 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.++|+.||+|+|||.++
T Consensus 208 ~n~LLvGppGvGKT~la 224 (758)
T PRK11034 208 NNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999875
No 311
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.24 Score=51.61 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.7
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+|+.||.|+|||.++
T Consensus 39 ~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 39 YIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEECCCCCCHHHHH
Confidence 699999999999876
No 312
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.33 E-value=0.1 Score=57.43 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=63.8
Q ss_pred CeEEEEecccchHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.++++.++++.-|...++.|.+ .++.+..+||+++..+|.++++.+.+|+.+|+|+|. .+...+.+.++.+||.
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 3699999999988877777655 478999999999999999999999999999999996 5666788888888874
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.24 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=17.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.+|+.||.|+|||.++ ..+...+
T Consensus 45 a~Lf~Gp~G~GKTT~A-rilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSA-RIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999876 3344443
No 314
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.31 E-value=0.03 Score=51.19 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
++|+.||.|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5899999999999865
No 315
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.17 Score=51.36 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=26.7
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChH
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
...+++||||+|+|.... ...+.+++..-++.. ++++++|-+..
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 467899999999986432 344555555544455 44455544333
No 316
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.18 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=16.9
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+|+.|+.|+|||.++ ..+...+.
T Consensus 41 ~Lf~Gp~GvGKTtlA-r~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVS-RILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhc
Confidence 589999999999876 33444443
No 317
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.16 Score=54.54 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|++.... ...+.+++...++...+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 468999999999886432 334555555555555444433
No 318
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.29 Score=46.84 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc-c--hhhHHHHHHHHHHHhhcCCCceEEEEECCCC
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP-T--RELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P-~--~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (565)
+..+.++|++|+|||..+..- ...+.. .+.++.++.- + .....|+....... ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l-~~~l~~-------~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~---------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKM-AWQFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKTI-----GF---------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HHHHHH-------cCCeEEEEecCCCCHHHHHHHHHHhhhc-----Cc----------
Confidence 356899999999999875432 222222 2444555543 2 24455544322221 11
Q ss_pred HHHHHHHHhCCCcEEE-EccHHHHHHHHcCCCCCCCceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecCh
Q 008430 235 IAEQRSELRGGVSIVV-ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 235 ~~~~~~~~~~~~~ilv-~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
.+.. .++..+.+.+..- -...++++||||-+=+.... .....+..++....+...++.++||...
T Consensus 132 ------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 132 ------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 2222 2344444333211 01235899999998664322 1233344555555554447779998654
Q ss_pred -HHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008430 313 -EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 362 (565)
+....+..|-.- .--.-++.+++...+.-.++.....
T Consensus 199 ~d~~~~~~~f~~~-------------~~~~~I~TKlDet~~~G~~l~~~~~ 236 (270)
T PRK06731 199 KDMIEIITNFKDI-------------HIDGIVFTKFDETASSGELLKIPAV 236 (270)
T ss_pred HHHHHHHHHhCCC-------------CCCEEEEEeecCCCCccHHHHHHHH
Confidence 555555555321 0112345556655565555555544
No 319
>CHL00181 cbbX CbbX; Provisional
Probab=95.22 E-value=0.12 Score=50.25 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+.++++.||+|+|||.++
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446899999999999986
No 320
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.21 Score=50.52 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+.... ...+.+.+...++...+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 457899999999886432 223444444444444444443
No 321
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.18 E-value=0.033 Score=59.04 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHhHh--------CCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 142 TRPTSIQAQAMPVAL--------SGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~--------~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
..+...|.+++-... .|. .+||-...|.||-.+.+--+++..++ ..+++|.+.-...|--...
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-------ccceeEEEEeccccccchh
Confidence 356778888886554 233 37777777777765443445555554 3677999998889988887
Q ss_pred HHHHHHhhcCCCceEEEEECCC----CHHHHHHHHhCCCcEEEEccHHHHHHHHcC--C-----------CCCCCceEEE
Q 008430 212 KEVKALSRSLDSFKTAIVVGGT----NIAEQRSELRGGVSIVVATPGRFLDHLQQG--N-----------TSLSRVSFVI 274 (565)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~--~-----------~~~~~~~~iI 274 (565)
+.++..... ++.+..+..-. +.++ .-+-+-.|+|+|+..|.-.-... . +--+.=++||
T Consensus 336 RDL~DigA~--~I~V~alnK~KYakIss~e---n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIv 410 (1300)
T KOG1513|consen 336 RDLRDIGAT--GIAVHALNKFKYAKISSKE---NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIV 410 (1300)
T ss_pred hchhhcCCC--Cccceehhhcccccccccc---cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEE
Confidence 777776432 34443332110 0000 11122469999998884222110 0 0112236899
Q ss_pred ecchhHhhcC---------CCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 275 LDEADRMLDM---------GFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 275 iDE~H~~~~~---------~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
+||||...+. -.+..+..+-+.+| +.+++..|||=
T Consensus 411 fDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 411 FDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred ehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 9999987651 13445566666665 56699999995
No 322
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.15 Score=51.06 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=27.1
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
....+|||||+|.|.... ...+.+++...+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECCh
Confidence 467899999999886332 344566666655555555655443
No 323
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.16 E-value=0.18 Score=48.72 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCHHHHHHHHhHh----CCC-CEEEEccCCChhHHHH
Q 008430 144 PTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAF 175 (565)
Q Consensus 144 ~~~~Q~~~l~~l~----~g~-~~li~a~TGsGKT~~~ 175 (565)
+++.+.+++..+. .+. .+++.|+.|+|||.+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3455555665543 333 4889999999999865
No 324
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.14 Score=55.11 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...++|||||+|.+.... ...+.+++...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999876432 233455555555555455544
No 325
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.16 Score=53.88 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|++.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 468899999999887432 233444555544555455544
No 326
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.085 Score=58.12 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~ 306 (565)
..++++||||+|+|.... ...+.+++...+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 358899999999986332 33445555555555544443
No 327
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.32 Score=53.14 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=36.0
Q ss_pred EccHHHHHHHHcCCCCCCCceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChH-HHHHHHHH
Q 008430 251 ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVE-IEALAQEY 321 (565)
Q Consensus 251 ~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~-~~~~~~~~ 321 (565)
.+++.+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...++.++||...+ +.+.+..|
T Consensus 249 ~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 249 KDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 356666555543 335688999887754322 12233333443344445577888887544 34444444
No 328
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.11 E-value=0.23 Score=52.70 Aligned_cols=134 Identities=20% Similarity=0.215 Sum_probs=81.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC-CCceEEEEECCCCHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNIAE 237 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~ 237 (565)
+-.++..|=-.|||+... +++..++..- .|.++++++|...-++..++++...+... ....+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 346888899999999654 5555554321 37789999999999999999998876532 1111222222 110
Q ss_pred HHHHHhCC--CcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CCCCcEEEEEeecCh
Q 008430 238 QRSELRGG--VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPV 312 (565)
Q Consensus 238 ~~~~~~~~--~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~ 312 (565)
...+.++ ..|.+++- ...+...-..++++|||||+.+.+ ..+..++..+ ..+.++|.+|.|-..
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCC
Confidence 0001112 25556531 111223334799999999998874 4445554333 236778999988643
No 329
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.10 E-value=0.18 Score=55.35 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=73.4
Q ss_pred eccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-CCceeEecCCCCHHHHHHHHHHhhcCCc
Q 008430 347 VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 347 ~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
.....|....+..+...... +.++||.++++..+..+.+.|.+. +..+..+||+++..+|.+...+...|+.
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~-------g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQ-------GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA 242 (679)
T ss_pred CCCChHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 34455665555544443322 235999999999999999999874 7889999999999999999999999999
Q ss_pred eEEEEcCcccCCCCccCccEEEEcCC
Q 008430 426 NILVATDVASRGLDVMGVAHVVNLDL 451 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip~v~~Vi~~~~ 451 (565)
+|+|+|.... -+.+.++.+||.-+.
T Consensus 243 ~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 243 KVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CEEEeccHHh-cccccCCCEEEEECC
Confidence 9999997332 245677888876553
No 330
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.02 E-value=0.3 Score=47.88 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
++.+++.|++|+|||..+ .++...+.. .|..++|+.- .+|+.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~-------~g~~v~~~~~-~~l~~~lk 200 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK-------KGVSSTLLHF-PEFIRELK 200 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH-------cCCCEEEEEH-HHHHHHHH
Confidence 457999999999999876 445555544 2555655532 24554443
No 331
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.02 E-value=0.28 Score=50.76 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHhHhC------C----CCEEEEccCCChhHHHHHHHHH-HHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 143 RPTSIQAQAMPVALS------G----RDLLGCAETGSGKTAAFTIPMI-QHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~------g----~~~li~a~TGsGKT~~~~l~~l-~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
.+-|||.-++-.|.. | +.++|..|-|-|||..++.-+. ..+... ..+..+.+++|+.+-+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 578999999999871 2 2379999999999977653333 233332 24677999999999999998
Q ss_pred HHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC--CCCCCCceEEEecchhHhhcCCCHHH
Q 008430 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLDMGFEPQ 289 (565)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~--~~~~~~~~~iIiDE~H~~~~~~~~~~ 289 (565)
..++......+.+....- .......|.+.--......+... ...-.+..+.|+||.|.....+ ..
T Consensus 136 ~~ar~mv~~~~~l~~~~~-----------~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 136 NPARDMVKRDDDLRDLCN-----------VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHHHHhCcchhhhhc-----------cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 888887765331111000 00011112222111222222222 2334457899999999876542 44
Q ss_pred HHHHHHhC--CCCCcEEEEEee
Q 008430 290 IREVMQNL--PDKHQTLLFSAT 309 (565)
Q Consensus 290 ~~~i~~~~--~~~~~~l~~SAT 309 (565)
|..+..-+ .++.++++.|..
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHhhhccCcCceEEEEecC
Confidence 55554444 234556666653
No 332
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.35 Score=48.72 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=63.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCC---CCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
.|+.||.|+||+..+ ..+...++.+...... ..+..+-+++.-.-+. .+.. +.++++.+..-..+....
T Consensus 44 ~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~----~i~~--~~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 44 WLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR----RIAA--GAHGGLLTLERSWNEKGK- 115 (365)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHH----HHHc--cCCCCeEEEecccccccc-
Confidence 889999999999876 6667777654321110 0012233333222221 2221 222343332211111000
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
.....|.|-..-.+.+.+... .......+|||||+|++... -...+.+++...+....+|++|..+
T Consensus 116 -----~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 -----RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred -----cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 001223222222233322221 22346789999999988532 2344556666555555455555554
No 333
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.19 Score=53.18 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|++.... ...+.+.+...++...+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986432 334555556555555455444
No 334
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.99 E-value=0.079 Score=53.98 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
+.......+..+..++++++.|++|+|||.++
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455666777778899999999999999876
No 335
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.23 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=18.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.+|+.||.|+|||.++ ..+...+.
T Consensus 40 a~Lf~Gp~G~GKttlA-~~lAk~L~ 63 (620)
T PRK14948 40 AYLFTGPRGTGKTSSA-RILAKSLN 63 (620)
T ss_pred eEEEECCCCCChHHHH-HHHHHHhc
Confidence 4799999999999876 44555444
No 336
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.97 E-value=0.16 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=18.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.+++|.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999875 44555443
No 337
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.18 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=16.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.+|+.||.|+|||.++ ..+...+
T Consensus 40 a~Lf~GPpG~GKTtiA-rilAk~L 62 (624)
T PRK14959 40 AYLFSGTRGVGKTTIA-RIFAKAL 62 (624)
T ss_pred eEEEECCCCCCHHHHH-HHHHHhc
Confidence 4788999999999986 3333433
No 338
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.16 Score=50.51 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=25.8
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..+.+||||||+.|... -...+.+++..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 56899999999988742 2445556666555566455444
No 339
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.42 Score=51.16 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-.|++||.|+|||.++
T Consensus 40 ayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 40 AYLFSGPRGTGKTSAA 55 (559)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999876
No 340
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.93 E-value=0.16 Score=52.66 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||... +-+...... .+.+++|+.-. +-..|+.....++
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~-------~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAA-------AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 345899999999999865 434433332 25678998864 5556776666554
No 341
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.90 E-value=0.21 Score=50.34 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||... +-+...+.. .+.+++|+.-. +-..|+.....++
T Consensus 82 GslvLI~G~pG~GKStLl-lq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLL-LQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 445899999999999865 334433332 24578888764 4456666655554
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.90 E-value=0.5 Score=45.54 Aligned_cols=55 Identities=15% Similarity=0.272 Sum_probs=31.0
Q ss_pred CCceEEEecchhHhhcC-CCHHHHHHHHHhCC------CCCcEEEEEeecChHHHHHHHHHc
Q 008430 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLP------DKHQTLLFSATMPVEIEALAQEYL 322 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~------~~~~~l~~SAT~~~~~~~~~~~~~ 322 (565)
.++++||||=+-++... .....+..+..... +...++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45789999988765321 12233444444333 444578889987655444444443
No 343
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.24 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=17.4
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+|+.||.|+|||.++ ..+...+.
T Consensus 39 ~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh
Confidence 599999999999876 44444444
No 344
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.88 E-value=0.1 Score=51.28 Aligned_cols=65 Identities=28% Similarity=0.273 Sum_probs=41.9
Q ss_pred HHHHHCCCCCCCHHHHHHHHhHh-CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 134 KDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~l~~l~-~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
+.+...|. +++.|.+.|..+. .++++||+|+||||||... -.++..+...+ .+.+++.+=...||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC-----CCceEEEecCCccc
Confidence 34444443 5678888877665 4568999999999999753 44444443221 23467777666676
No 345
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.82 E-value=0.16 Score=49.36 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+.++++.||+|||||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 447999999999999876
No 346
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.76 E-value=0.58 Score=52.10 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.++|+.||+|+|||.++
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999875
No 347
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.29 Score=48.83 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~ 176 (565)
++.++++||+|+|||.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999998753
No 348
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.75 E-value=0.19 Score=52.13 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=54.1
Q ss_pred CCCHHHH-HHHHHCCCCCCCH----HHHHHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 127 CLHPSIM-KDIEFHEYTRPTS----IQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 127 ~l~~~i~-~~l~~~~~~~~~~----~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
+..++++ ..|++..-.+++. +|.+-=+.+...+ -++|.|+.|||||.+++--+...+...+..- .++.+|+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l--~~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL--QAKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--ccCceEE
Confidence 4555554 4555554444443 3555445555443 4889999999999998766665555543222 2344999
Q ss_pred EccchhhHHHHHHHHHH
Q 008430 200 LAPTRELAQQIEKEVKA 216 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~ 216 (565)
+.|.+-++.-+.+.+-.
T Consensus 266 l~PN~vFleYis~VLPe 282 (747)
T COG3973 266 LGPNRVFLEYISRVLPE 282 (747)
T ss_pred EcCcHHHHHHHHHhchh
Confidence 99999877654444333
No 349
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.71 E-value=0.64 Score=50.47 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=84.2
Q ss_pred HHHCCCCCCCHHHHHHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHH
Q 008430 136 IEFHEYTRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
+..........-|.+.+..++..+ -+++.|+=|=|||.+.-+.+.. +.... ...+++|.+|+.+-++..++.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 433334444445555566666554 4788999999999876555422 22210 134799999999988888877
Q ss_pred HHHHhhcCCCceEEEEECC-CCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHH
Q 008430 214 VKALSRSLDSFKTAIVVGG-TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 292 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 292 (565)
+.+-+... +.+....... ..... .......|=+-+|.... ..-++||||||=-+. .+.+.+
T Consensus 281 a~~~l~~l-g~~~~v~~d~~g~~~~---~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 281 AGKGLEFL-GYKRKVAPDALGEIRE---VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHHhHHHh-CCccccccccccceee---ecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHH
Confidence 77666543 2211111110 00000 00011223344444332 126899999998665 666777
Q ss_pred HHHhCCCCCcEEEEEeec
Q 008430 293 VMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 293 i~~~~~~~~~~l~~SAT~ 310 (565)
++..+ +.++||.|+
T Consensus 343 l~~~~----~rv~~sTTI 356 (758)
T COG1444 343 LLRRF----PRVLFSTTI 356 (758)
T ss_pred HHhhc----CceEEEeee
Confidence 76654 468899998
No 350
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.32 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=16.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
+|+.||.|+|||.++ ..+...+
T Consensus 41 ~Lf~Gp~G~GKTtlA-~~lA~~l 62 (585)
T PRK14950 41 YLFTGPRGVGKTSTA-RILAKAV 62 (585)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999876 4444444
No 351
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.66 E-value=0.17 Score=53.39 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=70.9
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-CCceeEecCCCCHHHHHHHHHHhhcCCceE
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
...|....+..+...... +.++|+.++++.-+..+++.|.+. +..+..+||+++..+|.+...+..+|+.+|
T Consensus 7 GsGKT~v~l~~i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CCCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 445655555554443322 235999999999999999999875 678899999999999999999999999999
Q ss_pred EEEcCcccCCCCccCccEEEEcC
Q 008430 428 LVATDVASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~ 450 (565)
+|+|...-. ..+.++.+||.-+
T Consensus 80 VVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 80 VIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred EECChHHHc-CcccCCCEEEEEC
Confidence 999964322 3566777777544
No 352
>PRK10867 signal recognition particle protein; Provisional
Probab=94.65 E-value=0.49 Score=48.59 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=21.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
++++|++|+|||.+.+ -+..++... .|.++++|.
T Consensus 103 I~~vG~~GsGKTTtaa-kLA~~l~~~------~G~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAG-KLAKYLKKK------KKKKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHHHh------cCCcEEEEE
Confidence 7889999999998763 333333332 155566655
No 353
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.61 E-value=0.1 Score=52.40 Aligned_cols=27 Identities=41% Similarity=0.546 Sum_probs=19.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
+..++|+||||||||... -.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 345899999999999764 455555543
No 354
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.59 E-value=0.22 Score=48.50 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.4
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+|++||.|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 5899999999999865
No 355
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.15 Score=54.07 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=17.8
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
..|+.||.|+|||.++ ..+...+.
T Consensus 40 A~Lf~GP~GvGKTTlA-~~lAk~L~ 63 (605)
T PRK05896 40 AYIFSGPRGIGKTSIA-KIFAKAIN 63 (605)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhc
Confidence 4789999999999876 44444443
No 356
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.53 E-value=0.21 Score=54.60 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=63.4
Q ss_pred CeEEEEecccchHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.++++.++++.-|...++.+.+ .|+.+..+||+++..+|..+++.+.+|+.+|+|+|. .+...+++.++.+||.
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 3599999999999888777765 378999999999999999999999999999999996 5556778888888774
No 357
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.52 E-value=0.13 Score=50.67 Aligned_cols=66 Identities=26% Similarity=0.303 Sum_probs=42.9
Q ss_pred HHHHHHCCCCCCCHHHHHHHHhHh-CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 133 MKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~~l~~l~-~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
++.+...|. +++.|.+.+..+. .+++++++|+||+|||... -.++..+.... ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 344544554 5677888887654 5668999999999999643 44554432211 24567777777776
No 358
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.50 E-value=0.1 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=19.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.+..++|+||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4556999999999999864 44444443
No 359
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.47 E-value=0.28 Score=46.48 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=27.0
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
.|.-++|.|++|+|||... +-++.....+ .+..++|+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~-~~~~~~~~~~------~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFA-LNIAENIAKK------QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCceEEEeC
Confidence 5566899999999999865 4444443332 2566888884
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.46 E-value=0.093 Score=56.70 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=36.5
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
+.-++|+|+.|.+.+......++.++++.|++.++++.|-+-
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 346999999999998888889999999999999888887664
No 361
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.29 Score=48.15 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|++||.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 46999999999999875
No 362
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.42 E-value=0.21 Score=52.85 Aligned_cols=73 Identities=15% Similarity=0.287 Sum_probs=64.2
Q ss_pred eEEEEecc----cchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEE
Q 008430 376 LTIVFVER----KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 376 ~~liF~~s----~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
++.+-++| ..|.+.+.+.|...|+.+..+.|.+....|+++++...+|+++++|+|- .+...|++.+.-+||.
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 47888888 4566777777888899999999999999999999999999999999995 6888999998888874
No 363
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.41 E-value=0.35 Score=54.75 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.+.+++||+|+|||.++
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999875
No 364
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.39 E-value=0.055 Score=56.68 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+|+.+|.+.+..+. .|+-.|+-+|||||||+..+-..+.++.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 78999998887765 6888899999999999987666666554
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.32 E-value=0.76 Score=47.19 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
++++|++|+|||.+++ -+...+..+ .+.+++++.
T Consensus 102 i~~vG~~GsGKTTtaa-kLA~~l~~~------~g~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCG-KLAYYLKKK------QGKKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHHHh------CCCeEEEEe
Confidence 7889999999998763 333333321 245566555
No 366
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.28 E-value=0.1 Score=50.69 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHhHhCCC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 139 HEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
..+..+++-|...+-.+..++ ++|++|.||||||.. +-++..... ...+++.+=-+.||--
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-------~~eRvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-------SDERVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-------CcccEEEEeehhhhcc
Confidence 355688999999998888776 899999999999975 222222111 1337888888887743
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.27 E-value=0.56 Score=48.74 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTI 177 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l 177 (565)
+-++++||||+|||.+...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 3478999999999987543
No 368
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.25 E-value=0.45 Score=44.64 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.|..+++.|++|+|||..+. .++..... .+..++++.- .+...++.+..+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~-~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCL-HFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHH-HHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 45678999999999998653 33333332 2556777774 3444555554443
No 369
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.066 Score=52.72 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+|++..||+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 57999999999999864
No 370
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.23 E-value=1.6 Score=38.08 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=37.8
Q ss_pred CCCceEEEecchhHhhcCCC--HHHHHHHHHhCCCCCcEEEEEeecChHHHHHH
Q 008430 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 318 (565)
...+++||+||+=...+.++ ...+..++...++..-+|+.+-.+|..+.+.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 45689999999998876663 34567777777777777777777777665443
No 371
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.56 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=17.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHh
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
+|+.||.|+|||.++ ..+...+..
T Consensus 41 ~lf~Gp~G~GKtt~A-~~~a~~l~c 64 (397)
T PRK14955 41 YIFSGLRGVGKTTAA-RVFAKAVNC 64 (397)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhcC
Confidence 789999999999886 444444443
No 372
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.23 E-value=0.7 Score=45.55 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 255 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 255 ~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
.+.+.+....+ ....+++|||++|.|.... ...+.+++..-+ +..++++|..+
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 34444443322 2468999999999886332 445666666655 55455555443
No 373
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.28 Score=47.96 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=32.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCC-CHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRP-TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~-~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
..+|.+++=-+.+.++|+..-+..+ +|-.-.--..+...+.+|+.+|.|+|||.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 4578888766777766654322111 1111111111123357999999999999976
No 374
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.18 E-value=0.51 Score=46.79 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=24.1
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++|||||+|.+.... ...+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999875321 334555666656666555544
No 375
>PTZ00293 thymidine kinase; Provisional
Probab=94.13 E-value=0.43 Score=43.62 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=26.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
|+=.++.||+++|||.-. +-.+..... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteL-Lr~i~~y~~-------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL-MRLVKRFTY-------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHH-HHHHHHHHH-------cCCceEEEEecc
Confidence 444688999999999643 444444333 266789998864
No 376
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.13 E-value=0.71 Score=41.76 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
.+|+.||.|+|||..+ ..+...+..
T Consensus 16 ~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 4889999999999865 444555443
No 377
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.10 E-value=1.5 Score=38.77 Aligned_cols=51 Identities=24% Similarity=0.461 Sum_probs=37.1
Q ss_pred CCceEEEecchhHhhcCCCH--HHHHHHHHhCCCCCcEEEEEeecChHHHHHH
Q 008430 268 SRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 318 (565)
..+++||+||+-...+.++. ..+..++...++...+|+..-.+|..+.+.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 46899999999988877743 4566777777777767777767776665443
No 378
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.09 E-value=0.38 Score=54.28 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
++.+++||+|+|||.++
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999876
No 379
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.08 E-value=0.21 Score=50.55 Aligned_cols=143 Identities=14% Similarity=0.032 Sum_probs=78.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 132 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 132 i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
+++.+++ ++..+-..|.++.-..-.|.. .|.|=.|||||.+.++-+.. +... +...+++|.+=|+.|+.++.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~k-----nPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSK-----NPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcC-----CCCceEEEEeehHHHHHHHH
Confidence 3444432 344566778777666556654 66788899999975544433 2222 13567999999999999998
Q ss_pred HHHHHHhhcC-------CCceEEEEECCCCHHHHH---HHHhCCCcEEEEcc----HHHHHHHHcCCCCCCCceEEEecc
Q 008430 212 KEVKALSRSL-------DSFKTAIVVGGTNIAEQR---SELRGGVSIVVATP----GRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 212 ~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~---~~~~~~~~ilv~T~----~~l~~~l~~~~~~~~~~~~iIiDE 277 (565)
..+.+++-.. ...-+.--.||....-.. .....-..+-++-. ...+..+....-....+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 8888776321 112222223443321111 11111122222211 122233333333466799999999
Q ss_pred hhHhh
Q 008430 278 ADRML 282 (565)
Q Consensus 278 ~H~~~ 282 (565)
.+.+.
T Consensus 304 ~QDFP 308 (660)
T COG3972 304 SQDFP 308 (660)
T ss_pred cccCC
Confidence 99653
No 380
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.92 E-value=0.17 Score=47.49 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..++|.|++|+|||..++--+...+... |.+++|++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 345699999999999987643333333321 455888884 34445566665544
No 381
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.91 E-value=0.23 Score=50.84 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCHHHHHHHHhHhCCCC--EEEEccCCChhHHHHHHHHHHHHHh
Q 008430 144 PTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 144 ~~~~Q~~~l~~l~~g~~--~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
..+.|.+.+..+++... +|+.||||||||.+. ..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 37788888888876654 789999999999863 666766544
No 382
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.90 E-value=0.36 Score=54.61 Aligned_cols=74 Identities=14% Similarity=0.228 Sum_probs=63.7
Q ss_pred CeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.+++|.++|+.-|...++.|.+. ++.+..++|..+..++..+++.+++|+++|+|+|. ++...+.+.++.+||.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 36999999999999988877763 67788899999999999999999999999999996 5666788888888774
No 383
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.88 E-value=0.4 Score=50.24 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 356999999999999864
No 384
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.87 E-value=0.71 Score=43.45 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||..+.. ++..... ++.+++|+.-.. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~-~~~~~~~-------~g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQ-FVYGALK-------QGKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHH-HHHHHHh-------CCCEEEEEEcCC-CHHHHHHHHHHC
Confidence 45589999999999987633 3333222 366788887543 345555655554
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.86 E-value=1.5 Score=43.30 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=30.2
Q ss_pred CCceEEEecchhHhhcC-CCHHHHHHHHHhC------CCCCcEEEEEeecChHHHHHHHHH
Q 008430 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNL------PDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~------~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++++||||=+-++... .....+.++.... .+...++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 46899999988765422 1223344443321 233347888999765443344444
No 386
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.85 E-value=0.54 Score=51.21 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=13.7
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+|+.||.|+|||.++
T Consensus 43 YLF~GP~GtGKTt~A 57 (725)
T PRK07133 43 YLFSGPRGTGKTSVA 57 (725)
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999876
No 387
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.84 E-value=2 Score=38.22 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=27.1
Q ss_pred CceEEEecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 269 RVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
..++||||....... ......+..+.....+..-++.+.|.-..+.......+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 578899999886531 11223333333333344445666665444443344333
No 388
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=0.73 Score=47.04 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=41.3
Q ss_pred CCCceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChH-HHHHHHHHcCCCeEEEeCCcCCCCCceEEEE
Q 008430 267 LSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVE-IEALAQEYLTDPVQVKVGKVSSPTANVIQIL 344 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (565)
+.+.++|+||.+=+.-.. .....+..+.....+...+|.++||.... +.+.+..|-..+ --..++
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~-------------~~~~I~ 333 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG-------------IHGCII 333 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC-------------CCEEEE
Confidence 456788999986322110 01222333322222334478899997555 344444432111 112345
Q ss_pred EEeccchHHHHHHHHHHHH
Q 008430 345 EKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 345 ~~~~~~~k~~~l~~~l~~~ 363 (565)
.+++...+.-.++..+...
T Consensus 334 TKlDEt~~~G~~l~~~~~~ 352 (420)
T PRK14721 334 TKVDEAASLGIALDAVIRR 352 (420)
T ss_pred EeeeCCCCccHHHHHHHHh
Confidence 5666666666666665543
No 389
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.82 E-value=0.52 Score=53.28 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=14.7
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
+.++.||+|+|||.+.
T Consensus 201 n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 201 NPVLIGEPGVGKTAIV 216 (857)
T ss_pred ceEEECCCCCCHHHHH
Confidence 7999999999999875
No 390
>PRK06904 replicative DNA helicase; Validated
Probab=93.78 E-value=0.88 Score=47.58 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEE-EC-CCC
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VG-GTN 234 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~-~g-~~~ 234 (565)
.|.=++|.|.+|.|||..+ +-+...+... .+..++|+... .-..|+..++-...... ....+ .| ...
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v---~~~~i~~g~~l~ 288 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLSRV---DQTKIRTGQNLD 288 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhCCC---CHHHhccCCCCC
Confidence 3444788999999999865 4454443321 25557777653 45666666655443322 11111 23 233
Q ss_pred HHHHHH------HHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 235 IAEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 235 ~~~~~~------~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
..++.. .+....++.|- |+..+.............+++||||=.+.+.
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 333221 22223445552 4445543332211111247899999998775
No 391
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.75 E-value=0.95 Score=48.84 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+-+++.||+|+|||.++
T Consensus 111 ~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 111 RILLITGPSGCGKSTTI 127 (637)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34899999999999864
No 392
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.74 E-value=0.67 Score=48.89 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=25.9
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|.+.... ...+.+.+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 468999999999886432 334555666656666555544
No 393
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.73 E-value=1.2 Score=40.07 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCCceEEEecchhHhhcCCCH--HHHHHHHHhCCCCCcEEEEEeecChHHHHHH
Q 008430 267 LSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 318 (565)
-..+++||+||+-...+.++. ..+..++...++..-+|+..-.+|..+.+.+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 356899999999998887743 4566677777777666766666776665443
No 394
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.38 Score=49.28 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||+++
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 56899999999999975
No 395
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=93.63 E-value=0.45 Score=48.47 Aligned_cols=75 Identities=17% Similarity=0.072 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 140 EYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
.|...+|.|.+-+-.+. .+.++|+-+|+|+|||...+--++...+..+. ...++++..-|..=.+....+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHH
Confidence 45566788876665544 45579999999999998764444444444332 24567887777666666666666
Q ss_pred HHh
Q 008430 216 ALS 218 (565)
Q Consensus 216 ~~~ 218 (565)
.+.
T Consensus 89 ~l~ 91 (755)
T KOG1131|consen 89 RLM 91 (755)
T ss_pred HHH
Confidence 665
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.59 E-value=0.2 Score=48.99 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=40.2
Q ss_pred HHHHHCCCCCCCHHHHHHHHhHh-CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 134 KDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~l~~l~-~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
+.+...| .+.+.|.+.+..+. .+++++++|+||+|||... -.++..+.... ...+++++=...|+
T Consensus 109 ~~l~~~g--~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAG--IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC-----CCceEEEECCchhh
Confidence 4444444 24556666666554 4568999999999999764 44444432211 24567777777776
No 397
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.29 Score=53.24 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=79.8
Q ss_pred EEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-CCceeEecCCCCHHHHHHHHHHh
Q 008430 342 QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDF 420 (565)
Q Consensus 342 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f 420 (565)
..+..++...|.+..++.+.+....+. .+||.++.+.....+.+.|... |.++..+|+++++.+|.....+.
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------qvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~ 292 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGK-------QVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRA 292 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCC-------EEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHH
Confidence 345666778888888888888776554 4999999999999998888876 88999999999999999999999
Q ss_pred hcCCceEEEEcCcccCCCCccCccEEEE
Q 008430 421 RNGSTNILVATDVASRGLDVMGVAHVVN 448 (565)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidip~v~~Vi~ 448 (565)
..|+.+|+|+|..+- =.-+++..+||.
T Consensus 293 ~~G~~~vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 293 RRGEARVVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred hcCCceEEEEechhh-cCchhhccEEEE
Confidence 999999999996321 224455666654
No 398
>PF05729 NACHT: NACHT domain
Probab=93.50 E-value=0.9 Score=39.74 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=17.8
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
-++|.|+.|+|||... --+...+..
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHh
Confidence 3789999999999865 444444444
No 399
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.51 Score=43.78 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||.|+|||+.+
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 56999999999999865
No 400
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=1.8 Score=45.55 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.7
Q ss_pred EEEEccCCChhHHHHH
Q 008430 161 LLGCAETGSGKTAAFT 176 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~ 176 (565)
.|+.||.|+|||.++.
T Consensus 41 yLf~Gp~G~GKTtlAr 56 (486)
T PRK14953 41 YIFAGPRGTGKTTIAR 56 (486)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998763
No 401
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.41 E-value=0.58 Score=50.97 Aligned_cols=95 Identities=22% Similarity=0.169 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-C-CceeEecCCCCHHHHHHHHHHhhcCCce
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
...|....++.+......+. .+||.++.+..+..+.+.|.+. + ..+..+|++++..+|.+...+..+|+.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk-------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGR-------GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCC-------eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 34677777777766654433 4999999999999999999876 3 5789999999999999999999999999
Q ss_pred EEEEcCcccCCCCccCccEEEEcCC
Q 008430 427 ILVATDVASRGLDVMGVAHVVNLDL 451 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~ 451 (565)
|+|+|..+- =.-+++..+||..+-
T Consensus 243 IViGtRSAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 243 VVVGTRSAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred EEEEcceeE-EeccCCCCEEEEEcC
Confidence 999996422 234566777777654
No 402
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.19 E-value=0.24 Score=49.66 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
+..++++||||+|||... ..++..+... .+.+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC------CCCEEEEEcCChhh
Confidence 456899999999999864 3344433211 23456666554454
No 403
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.15 E-value=0.91 Score=51.24 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.2
Q ss_pred HHHHHHhHh----CC--CCEEEEccCCChhHHHH
Q 008430 148 QAQAMPVAL----SG--RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 148 Q~~~l~~l~----~g--~~~li~a~TGsGKT~~~ 175 (565)
|..-+..+. .+ .+.+++||.|+|||.+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555543 22 37999999999999875
No 404
>PHA00350 putative assembly protein
Probab=93.13 E-value=1 Score=45.43 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=30.6
Q ss_pred ceEEEecchhHhhcCC-----------------------CHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 270 VSFVILDEADRMLDMG-----------------------FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~-----------------------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
=.+|||||||.+.... ....+..+..+-....-++++|-.+. .+...++..
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~-~Id~~iR~l 155 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR-KIHSDIRAM 155 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH-HhhHHHHHh
Confidence 3699999999876432 12234444444445566888887763 444444443
No 405
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.12 E-value=0.92 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=17.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.|+.||.|+|||.++ ..+...+.
T Consensus 41 ~Lf~Gp~GvGKttlA-~~lAk~L~ 63 (620)
T PRK14954 41 YIFSGLRGVGKTTAA-RVFAKAVN 63 (620)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhC
Confidence 789999999999886 43444443
No 406
>PRK05973 replicative DNA helicase; Provisional
Probab=93.10 E-value=0.4 Score=44.88 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=38.2
Q ss_pred HHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 151 AMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 151 ~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..--+..|.-++|.|++|+|||..+ +-++..... +|.+++|+.-. +=..|+.+.+..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~la-lqfa~~~a~-------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLG-LELAVEAMK-------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 3334445667899999999999876 434433333 36668888754 3356777777665
No 407
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.08 E-value=1.2 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=17.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.+|+.||.|+|||.++ ..+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhc
Confidence 4789999999999765 44444443
No 408
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.06 E-value=0.23 Score=46.53 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=29.7
Q ss_pred EEccHHHHHHHHcCCCCCCCceEEEecchhHhh-cC----CCHHHHHHHHHhCCC-CCcEEEEEeec
Q 008430 250 VATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DM----GFEPQIREVMQNLPD-KHQTLLFSATM 310 (565)
Q Consensus 250 v~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~-~~----~~~~~~~~i~~~~~~-~~~~l~~SAT~ 310 (565)
..+...+...+...... -+|||||+|.+. .. ++...+..++..... ....+.++++.
T Consensus 103 ~~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp G--HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 33444555555543221 689999999998 21 244455666665322 22345566665
No 409
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.01 E-value=2.1 Score=41.63 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=69.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--cchhhHHHHHHHHHHHhhcCCCceEEE-EECCCCHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNIAE 237 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 237 (565)
++++|..|+|||.+. --+..++.. +|.++++.+ ..|+-+.++.+.+-+.. +..+.. -.|+....-
T Consensus 142 il~vGVNG~GKTTTI-aKLA~~l~~-------~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~DpAaV 209 (340)
T COG0552 142 ILFVGVNGVGKTTTI-AKLAKYLKQ-------QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEecCCCchHhHH-HHHHHHHHH-------CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCCcHHH
Confidence 788999999999874 334444443 477787777 34555554444444443 233322 122221111
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcC-CCHHHHHHHHHhCCCCC------cEEEEEeec
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKH------QTLLFSATM 310 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~------~~l~~SAT~ 310 (565)
+ ++.+.. -...++++|+||=|-|+-+. +.-..+.+|.+-..+.. -++.+-||.
T Consensus 210 -----------a-------fDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 210 -----------A-------FDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -----------H-------HHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 1 122221 12336788888888877543 23445555555444332 245558888
Q ss_pred ChHHHHHHHHH
Q 008430 311 PVEIEALAQEY 321 (565)
Q Consensus 311 ~~~~~~~~~~~ 321 (565)
..+--..++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 76655444444
No 410
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.93 E-value=1.1 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=17.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
..|+.||.|+|||.++ ..+...+.
T Consensus 41 a~Lf~Gp~G~GKtt~A-~~lAk~l~ 64 (451)
T PRK06305 41 AYLFSGIRGTGKTTLA-RIFAKALN 64 (451)
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHhc
Confidence 3789999999999876 44444443
No 411
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.88 E-value=0.83 Score=47.30 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEE-EECCCCH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNI 235 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~-~~g~~~~ 235 (565)
.|.-++|.|++|+|||..+ +-+...+... .+..++|+.- ..-..|+..++-.... ++.... ..|....
T Consensus 193 ~g~liviag~pg~GKT~~a-l~ia~~~a~~------~g~~v~~fSl-Em~~~~l~~Rl~~~~~---~v~~~~~~~~~l~~ 261 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLA-LNIAENVALR------EGKPVLFFSL-EMSAEQLGERLLASKS---GINTGNIRTGRFND 261 (421)
T ss_pred CCceEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCcEEEEEC-CCCHHHHHHHHHHHHc---CCCHHHHhcCCCCH
Confidence 4455899999999999865 4444333211 2556888763 3344455444433222 111111 1222222
Q ss_pred HHHH------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 236 AEQR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 236 ~~~~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.++. ..+ .+..+.|. |++.+.....+-......+++||||=.|.+.
T Consensus 262 ~~~~~~~~~~~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 262 SDFNRLLNAVDRL-SEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 2221 112 23345553 3333433332211111257899999888765
No 412
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.83 E-value=0.56 Score=52.33 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||+++
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999875
No 413
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.81 E-value=0.53 Score=45.68 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~ 176 (565)
+.++++||||+|||.+..
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999998753
No 414
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.77 E-value=0.25 Score=45.94 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=16.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~ 182 (565)
=++++|+|||||+... ..++.+
T Consensus 129 LviiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 129 LVIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred eEEEECCCCCCchhhH-HHHhcc
Confidence 3789999999999764 444443
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.72 E-value=0.94 Score=50.57 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 4567999999999999764
No 416
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.69 E-value=0.55 Score=47.94 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||+++
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 46999999999999875
No 417
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.65 E-value=0.72 Score=47.03 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=30.8
Q ss_pred CccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.|-.+|.+++-.+...+.+... .+..|.-++... +...+.+|+.||+|+|||+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3445677776555555444321 112221122111 123467999999999999875
No 418
>PRK08840 replicative DNA helicase; Provisional
Probab=92.57 E-value=1.7 Score=45.41 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEE-EEECCC
Q 008430 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA-IVVGGT 233 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~-~~~g~~ 233 (565)
+..|.=++|.|.+|.|||..+ +-+...+... .+..++|.... .=..|+..++-..... +... +..|..
T Consensus 214 ~~~g~LiviaarPg~GKTafa-lnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~s~---v~~~~i~~~~l 282 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFA-MNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASLSR---VDQTKIRTGQL 282 (464)
T ss_pred CCCCceEEEEeCCCCchHHHH-HHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhhCC---CCHHHHhcCCC
Confidence 334455888999999999865 4444443221 25557777653 3455565555443322 1111 112333
Q ss_pred CHHHHHH------HHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 234 NIAEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 234 ~~~~~~~------~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
...++.. .+.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 283 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 283 DDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 3333322 12123344443 3334433222211111247899999999774
No 419
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.55 E-value=0.27 Score=46.46 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..++|.|++|+|||..++- ++..... +|.+++|++- .+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~-~l~~~~~-------~ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQ-FLWNGLQ-------MGEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHH-------cCCcEEEEEe-eCCHHHHHHHHHHh
Confidence 345699999999999986633 3333223 3667888884 45666676666654
No 420
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.54 E-value=0.68 Score=44.37 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEE-CCCCHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV-GGTNIA 236 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 236 (565)
|.=++|.|.+|.|||..+ +-+...+... .+..|+|+...- -..++..++-......+ ...+. |.....
T Consensus 19 g~L~vi~a~pg~GKT~~~-l~ia~~~a~~------~~~~vly~SlEm-~~~~l~~R~la~~s~v~---~~~i~~g~l~~~ 87 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFA-LQIALNAALN------GGYPVLYFSLEM-SEEELAARLLARLSGVP---YNKIRSGDLSDE 87 (259)
T ss_dssp T-EEEEEESTTSSHHHHH-HHHHHHHHHT------TSSEEEEEESSS--HHHHHHHHHHHHHTST---HHHHHCCGCHHH
T ss_pred CcEEEEEecccCCchHHH-HHHHHHHHHh------cCCeEEEEcCCC-CHHHHHHHHHHHhhcch---hhhhhccccCHH
Confidence 344889999999999876 4444444442 246788888642 22333333333332211 11111 222222
Q ss_pred HHHH------HHhCCCcEEE-E----ccHHHHHHHHcCCCCCCCceEEEecchhHhhc
Q 008430 237 EQRS------ELRGGVSIVV-A----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 237 ~~~~------~~~~~~~ilv-~----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
++.. .+ ....+.| . |++.+...+..-......+++||||=.|.+..
T Consensus 88 e~~~~~~~~~~l-~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 88 EFERLQAAAEKL-SDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHH-HTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHH-hhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 2111 12 2233443 3 33344444332111225789999999998765
No 421
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.097 Score=49.97 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCEEEEccCCChhHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~ 176 (565)
-|+|++||||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 369999999999999763
No 422
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.45 E-value=0.41 Score=45.22 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
++|+.||.|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 5999999999999865
No 423
>PRK10436 hypothetical protein; Provisional
Probab=92.43 E-value=0.41 Score=49.67 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=25.2
Q ss_pred CHHHHHHHHhHhC--CCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 145 TSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~~l~~l~~--g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.+.|.+.+..+.. +.-+|++||||||||.+. ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 4455556655543 234889999999999864 4455553
No 424
>PRK13764 ATPase; Provisional
Probab=92.41 E-value=0.31 Score=51.98 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.++++|++|+||||||... ..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3567999999999999754 44555443
No 425
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.39 E-value=0.67 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=18.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~ 182 (565)
.++-+|++||+|+|||.+ +-++..
T Consensus 109 ~~~iLLltGPsGcGKSTt--vkvLsk 132 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTT--VKVLSK 132 (634)
T ss_pred CceEEEEeCCCCCCchhH--HHHHHH
Confidence 445588999999999986 445544
No 426
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.35 E-value=0.082 Score=47.28 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHhCCCcEEEEccHHHHHHHHcCCCC--CCCceEEEecchhHhhc
Q 008430 241 ELRGGVSIVVATPGRFLDHLQQGNTS--LSRVSFVILDEADRMLD 283 (565)
Q Consensus 241 ~~~~~~~ilv~T~~~l~~~l~~~~~~--~~~~~~iIiDE~H~~~~ 283 (565)
.....++|||+++..|++......+. ..+-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44466999999999997654433221 22447899999998764
No 427
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.30 E-value=0.15 Score=57.18 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=79.1
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 453 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~ 453 (565)
..++|+|..-....+.+...+...++.....-+ .++-...+..|++ --..|+-+...+.|+|+-+..+|+..+|-.
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 356999999888888888888888776655443 2345566677766 223567788899999999999999999999
Q ss_pred CcccceecccccccCCCceeEEEE
Q 008430 454 TVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 454 s~~~~~Q~~GR~~R~g~~g~~~~~ 477 (565)
++.+-.|.+||..|.|++-...+.
T Consensus 1297 N~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred CchHHHhhhhhhhhcccccchhhh
Confidence 999999999999999987555433
No 428
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.15 E-value=2.5 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.1
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.|+.||.|+|||.++ ..+...+.
T Consensus 41 yLf~Gp~G~GKTt~A-r~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSA-RAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHH-HHHHHhhc
Confidence 789999999999876 43444433
No 429
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.14 E-value=5.3 Score=36.35 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=28.2
Q ss_pred CCCceEEEecchhHhhcCCCHHHHHHH---HHhCCCCCcEEEEEeecC
Q 008430 267 LSRVSFVILDEADRMLDMGFEPQIREV---MQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i---~~~~~~~~~~l~~SAT~~ 311 (565)
..+-++||||=...+.-.+-...+..+ ++.+...-+++++|+.|.
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 345689999998877644322233333 333344556999999984
No 430
>PRK07004 replicative DNA helicase; Provisional
Probab=92.13 E-value=1.4 Score=46.08 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=56.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEE-EEECCCCH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA-IVVGGTNI 235 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~-~~~g~~~~ 235 (565)
.|.-++|.|.+|+|||..+ +-+....... .+..++|+.. ..=..|+..++-..... +... +..|....
T Consensus 212 ~g~liviaarpg~GKT~~a-l~ia~~~a~~------~~~~v~~fSl-EM~~~ql~~R~la~~~~---v~~~~i~~g~l~~ 280 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFS-MNIGEYVAVE------YGLPVAVFSM-EMPGTQLAMRMLGSVGR---LDQHRMRTGRLTD 280 (460)
T ss_pred CCceEEEEeCCCCCccHHH-HHHHHHHHHH------cCCeEEEEeC-CCCHHHHHHHHHHhhcC---CCHHHHhcCCCCH
Confidence 3445889999999999865 4444433221 2555777754 33445555554322211 1111 11233333
Q ss_pred HHHH------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 236 AEQR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 236 ~~~~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.++. ..+ .+..+.|. |+..+.....+-......+++||||=.+.+.
T Consensus 281 ~e~~~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 281 EDWPKLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 3332 122 23455553 3334433222211112247899999999775
No 431
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.09 E-value=1.5 Score=44.46 Aligned_cols=147 Identities=19% Similarity=0.157 Sum_probs=61.9
Q ss_pred EEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHH---HHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK---EVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 162 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
|+.++-|+|||.+.++.++..+...+ .+..++++....++...+.. .+..+................-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI---- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE----
Confidence 57889999999998777777776642 12455555444444444333 2333332211111110011100
Q ss_pred HHHHhCCCcEEEEccHHH--HHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec--ChHH
Q 008430 239 RSELRGGVSIVVATPGRF--LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM--PVEI 314 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l--~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~--~~~~ 314 (565)
.+.++..|.+.+...= ...+. -..+++|+|||+-.+.+..+...+...+..... ...+.+|.|+ ....
T Consensus 72 --~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 72 --ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWF 143 (384)
T ss_dssp --EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred --EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCce
Confidence 0123455666663321 01111 135789999998876544333333333333322 2222444443 3334
Q ss_pred HHHHHHHcCCC
Q 008430 315 EALAQEYLTDP 325 (565)
Q Consensus 315 ~~~~~~~~~~~ 325 (565)
...........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55555555444
No 432
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.09 E-value=0.68 Score=45.59 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.++++.||.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999765
No 433
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.06 E-value=0.92 Score=52.73 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=62.1
Q ss_pred CeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.+++|.|+++.-|..+++.|.+. ++.+..+++..+..++..+++.+++|.++|+|+|. .+...+.+.++.+||.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 46999999999999988888753 46778899999999999999999999999999995 5555677777777764
No 434
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.05 E-value=0.19 Score=47.21 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.6
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
++|.|+.|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999853
No 435
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.05 E-value=0.31 Score=53.72 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=49.7
Q ss_pred CeEEEEecccchHHHHHHHHHHc----C-CceeE-ecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE----G-LHAVA-LHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.++++.++|..-+.+.++.|... + ..+.. +|+.++..++++++++|.+|+.+|||+|..+
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 46899999988888888887664 2 33322 9999999999999999999999999999754
No 436
>PRK08006 replicative DNA helicase; Provisional
Probab=92.03 E-value=3.2 Score=43.41 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEE-EECCCCHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNIA 236 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 236 (565)
|.=++|.|.+|.|||..+ +-++..+... .+..|+|.... .=..|+..++-..... +.... ..|.....
T Consensus 224 G~LiiIaarPgmGKTafa-lnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~~~---v~~~~i~~~~l~~~ 292 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFA-MNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASLSR---VDQTRIRTGQLDDE 292 (471)
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHhcC---CCHHHhhcCCCCHH
Confidence 344788999999999765 4444443321 25557777653 4455565555543322 11111 12333333
Q ss_pred HHHH------HHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 237 EQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 237 ~~~~------~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
++.. .+.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 3322 12133445543 3444433332211111258999999999774
No 437
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.02 E-value=2.4 Score=41.54 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=60.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+.+.+.|+-|.|||.. +.++...+-- . .+ .-+|.-.-...+.+++..+- |..
T Consensus 66 ~GlYl~GgVGrGKT~L--MD~Fy~~lp~---~--~k----~R~HFh~FM~~vH~~l~~l~------------g~~----- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTML--MDLFYESLPG---E--RK----RRLHFHRFMARVHQRLHTLQ------------GQT----- 117 (367)
T ss_pred ceEEEECCCCccHHHH--HHHHHhhCCc---c--cc----ccccHHHHHHHHHHHHHHHc------------CCC-----
Confidence 4588999999999974 5555543321 0 11 12455555555555555542 111
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHh-CCCCCcEEEEEeecChHHH
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~ 315 (565)
+.+ ..+.+.+ ..+.++++|||+| +.|-+-.-.+.+++.. +.....++..|-|+|.++.
T Consensus 118 --------dpl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 118 --------DPL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLY 176 (367)
T ss_pred --------Ccc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhc
Confidence 111 1111111 2257899999999 3333222233444433 3457778888999987763
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.99 E-value=0.23 Score=35.45 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=20.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
|...++.+++|+|||.+ +.+++.++-
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHHc
Confidence 45689999999999975 677766554
No 439
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=0.88 Score=45.29 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEe
Q 008430 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
....+++||||+|.+.... ...+.+.++.-++...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 3467999999999986432 3445555555555554444333
No 440
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.89 E-value=0.23 Score=49.38 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=28.8
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
+..+++++|+|+||||||... -.++..+ . ...+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i-~-------~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAI-P-------PQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHccc-C-------CCCCEEEECCCcccc
Confidence 336678999999999999753 3333322 1 234577777777663
No 441
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=1.3 Score=46.33 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=33.5
Q ss_pred ccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 119 PIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
|-.+|++.|--.++...|... .+.. |-+-+++-.- .-..+|++||.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~--pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKR--PDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccC--HHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 457899988777776666422 2233 3233333211 1235999999999999975
No 442
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.83 E-value=0.39 Score=46.06 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=24.4
Q ss_pred CHHHHHHHHhHhC-C-CCEEEEccCCChhHHHHHHHHHHHH
Q 008430 145 TSIQAQAMPVALS-G-RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~~l~~l~~-g-~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.+.|.+.+..++. . ..++++|+||+|||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4445555655543 2 34899999999999864 4444443
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.80 E-value=0.5 Score=42.68 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHhHh-CCCCEEEEccCCChhHHHH
Q 008430 143 RPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~-~g~~~li~a~TGsGKT~~~ 175 (565)
.+.+.|.+.+.... .|..++++|+||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34566777776555 5678999999999999753
No 444
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.75 E-value=0.87 Score=48.25 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||..+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999875
No 445
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.72 E-value=2.7 Score=44.37 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=77.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC-CCceEEEEECCCCHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~ 238 (565)
-.+..-|=--|||+. +.|++..++..- .|-++.|++|.+..++-+.+++...+... +.-.+...-+
T Consensus 204 aTVFLVPRRHGKTWf-~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~------- 270 (668)
T PHA03372 204 ATVFLVPRRHGKTWF-IIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD------- 270 (668)
T ss_pred ceEEEecccCCceeh-HHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-------
Confidence 356677899999985 588888877732 47789999999877766555554333211 1111111111
Q ss_pred HHHHhCCCcEEEEccHH-----HHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC-CCCcEEEEEeec
Q 008430 239 RSELRGGVSIVVATPGR-----FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATM 310 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~-----l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~ 310 (565)
-.|.|.-|+. +......+...-.+++++++||||-+. ...+..|+..+. .++++|..|.|-
T Consensus 271 -------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 -------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred -------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 1233332221 111222334555679999999999765 555677766653 457788888875
No 446
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=91.69 E-value=0.24 Score=50.50 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=31.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
..+++++.|.||+|||.+ +..++..+..+ +.+++|.=|.-+....
T Consensus 14 e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-------g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQA-IRHLLDQIRAR-------GDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-------T-EEEEEEETTHHHHH
T ss_pred hhCcEEEECCCCCCHHHH-HHHHHHHHHHc-------CCEEEEEECCchHHHH
Confidence 557899999999999975 47778777664 6667777787666543
No 447
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.46 E-value=2 Score=44.75 Aligned_cols=112 Identities=12% Similarity=0.146 Sum_probs=56.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEE-EECCCCHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNIA 236 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 236 (565)
|.-++|.|++|+|||..+ +-++..+... .+..++|+... .=..|+..++-...... .... ..|.....
T Consensus 195 G~l~vi~g~pg~GKT~~~-l~~a~~~a~~------~g~~vl~~SlE-m~~~~i~~R~~~~~~~v---~~~~~~~g~l~~~ 263 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFA-LNIAENAAIK------EGKPVAFFSLE-MSAEQLAMRMLSSESRV---DSQKLRTGKLSDE 263 (434)
T ss_pred CeEEEEEeCCCCChHHHH-HHHHHHHHHh------CCCeEEEEeCc-CCHHHHHHHHHHHhcCC---CHHHhccCCCCHH
Confidence 345789999999999765 4444443321 25567777653 34555555554433221 1111 12222222
Q ss_pred HHH------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 237 EQR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 237 ~~~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
++. ..+. +..+.|. |+..+...+..-... ..+++||||=.+.+.
T Consensus 264 ~~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 264 DWEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 221 1222 2334442 334444333221111 247899999998764
No 448
>PRK08506 replicative DNA helicase; Provisional
Probab=91.45 E-value=1.6 Score=45.88 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|.||.|||..+ +-++..+.. .+..++|+.. ..=..|+..++-......+ ... +..|.....+
T Consensus 192 G~LivIaarpg~GKT~fa-l~ia~~~~~-------~g~~V~~fSl-EMs~~ql~~Rlla~~s~v~-~~~-i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLC-LNMALKALN-------QDKGVAFFSL-EMPAEQLMLRMLSAKTSIP-LQN-LRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHHH-HHHHHHHHh-------cCCcEEEEeC-cCCHHHHHHHHHHHhcCCC-HHH-HhcCCCCHHH
Confidence 344789999999999865 445444433 2556777765 3455666665544332211 110 1123333333
Q ss_pred HH------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 238 QR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 238 ~~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+. ..+. +..+.|- |+..+...+.+-......+++||||=.+.+.
T Consensus 261 ~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22 1122 2344442 4444443333211112257899999999775
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.44 E-value=1.3 Score=46.64 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=40.9
Q ss_pred HHHHhHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 150 QAMPVALSG-----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 150 ~~l~~l~~g-----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..++.++.| .-++|.|++|+|||... +-++..... +|.+++|+.- .|-..|+...++.+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~-~~f~~~~~~-------~ge~~~y~s~-eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLV-SKFLENACA-------NKERAILFAY-EESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEEe-eCCHHHHHHHHHHc
Confidence 455666644 35899999999999876 334444333 3667888884 56778888887765
No 450
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.41 E-value=1.1 Score=51.72 Aligned_cols=42 Identities=10% Similarity=0.322 Sum_probs=32.5
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
.--+||||++|.+.+......+..++...++...+|+.|-+.
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 345899999998865555667888888888888888877764
No 451
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.33 E-value=0.93 Score=51.14 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.9
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
++++||||+|||.++
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999976
No 452
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.28 E-value=2.5 Score=42.83 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=14.1
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+|+.||.|+|||..+
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999765
No 453
>PRK05748 replicative DNA helicase; Provisional
Probab=91.26 E-value=1.9 Score=44.97 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=57.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEE-EEECCCCHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA-IVVGGTNIA 236 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 236 (565)
|.-++|.|.+|.|||..+ +-++...... .+..++|+.. ..-..|+..++-..... +... ...|.....
T Consensus 203 G~livIaarpg~GKT~~a-l~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~~---v~~~~i~~~~l~~~ 271 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFA-LNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEGN---IDAQRLRTGQLTDD 271 (448)
T ss_pred CceEEEEeCCCCCchHHH-HHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhcC---CCHHHhhcCCCCHH
Confidence 345889999999999865 4455443321 2555777764 34455666665433222 1111 112333333
Q ss_pred HHH------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 237 EQR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 237 ~~~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
++. ..+ .+..+.|. |++.+...+.+-......+++||||=.|.+.
T Consensus 272 e~~~~~~a~~~l-~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSL-SDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 322 112 22344443 3444443332211111257899999999774
No 454
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=2.4 Score=43.72 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHh----H---hCC-----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCC
Q 008430 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPV----A---LSG-----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 126 ~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~----l---~~g-----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 193 (565)
++.+++.++.....|...-.+.=.+.+.. + ... ..+|+.||.|+|||..++-.++.. .
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S----------~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS----------D 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc----------C
Confidence 35666777776666654433333333321 1 111 248999999999997653322221 3
Q ss_pred CCeEEEEccchh
Q 008430 194 GPLALVLAPTRE 205 (565)
Q Consensus 194 ~~~~lil~P~~~ 205 (565)
-|.+=++.|..-
T Consensus 564 FPFvKiiSpe~m 575 (744)
T KOG0741|consen 564 FPFVKIISPEDM 575 (744)
T ss_pred CCeEEEeChHHc
Confidence 566778888643
No 455
>PRK08760 replicative DNA helicase; Provisional
Probab=91.08 E-value=2.2 Score=44.69 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
.=++|.|.+|.|||..+ +-++..+... .+..++|.... .-..|+..++.......+... +..|.....++
T Consensus 230 ~LivIaarPg~GKTafa-l~iA~~~a~~------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~--i~~g~l~~~e~ 299 (476)
T PRK08760 230 DLIILAARPAMGKTTFA-LNIAEYAAIK------SKKGVAVFSME-MSASQLAMRLISSNGRINAQR--LRTGALEDEDW 299 (476)
T ss_pred ceEEEEeCCCCChhHHH-HHHHHHHHHh------cCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH--HhcCCCCHHHH
Confidence 34788999999999865 4444443321 24557777653 445666666655432221111 11233333332
Q ss_pred H------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 239 R------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 239 ~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
. ..+ .+..+.|. |++.+...+.+-.. -..+++||||=.+.+.
T Consensus 300 ~~~~~a~~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 300 ARVTGAIKML-KETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 2 112 22445443 34444333322111 1247899999998774
No 456
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.04 E-value=0.2 Score=51.24 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=35.4
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
+++++|+||+|||..+++|-+.. . +..++|+=|.-++........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999987776543 1 34588888998998766555443
No 457
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.01 E-value=1.1 Score=46.51 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=34.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||... +-++..+.. ++.+++|+... +-..|+.....++
T Consensus 94 GsvilI~G~pGsGKTTL~-lq~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLL-LQVACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 445899999999999865 334443333 24568998864 4566776665554
No 458
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.43 Score=53.42 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=33.3
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCC-CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYT-RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~-~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
....|++++....+...|+.+-.. =++|-+-.-+ .+..-+.+|.+||.|+|||+++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 456777887777777666554321 1222221111 1113356999999999999875
No 459
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.88 E-value=0.99 Score=51.02 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=62.1
Q ss_pred CeEEEEecccchHHHHHHHH----HHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc-CcccCCCCccCccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEAL----VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidip~v~~Vi~ 448 (565)
+++.|.++|.--|+.=++.| ....+++..+.--.+.++..++++.+++|+++|+|+| .+++.+|-+.++-+||.
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 45999999966665555554 4457788888888899999999999999999999999 58999999999998874
No 460
>PHA00012 I assembly protein
Probab=90.72 E-value=2.6 Score=41.08 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCCceEEEecchhHhhcCC-C----HHHHHH-HHHhCCCCCcEEEEEeecChHHHHHHHHHcC
Q 008430 267 LSRVSFVILDEADRMLDMG-F----EPQIRE-VMQNLPDKHQTLLFSATMPVEIEALAQEYLT 323 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~-~----~~~~~~-i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~ 323 (565)
...-.++||||||...... . ...+.. +..+-....-++++|-.+. .+...++..+.
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR~ll~ 140 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAREALA 140 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHHHhhh
Confidence 3567899999999877421 1 122333 3333334455777777764 44445544443
No 461
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=90.64 E-value=0.075 Score=46.51 Aligned_cols=30 Identities=20% Similarity=0.069 Sum_probs=26.4
Q ss_pred CCCCCCCccccCCCCccccccCCCCCCCCC
Q 008430 28 SSSSSSSVVTLDSDLTTKLSFSSKSLPNFS 57 (565)
Q Consensus 28 ssssn~s~~a~~~~~e~~~~~~~~~~~~~~ 57 (565)
..|||+|.+||+.|.|||+++++..++...
T Consensus 137 iGSsNlt~sALt~n~Ewn~k~s~~~~g~i~ 166 (198)
T COG3886 137 IGSSNLTDSALTVNEEWNLKVSSSKNGDIV 166 (198)
T ss_pred EccchhhhhhcccCHHHHhhhccccccchH
Confidence 468999999999999999999999888443
No 462
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.62 E-value=0.74 Score=45.69 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=27.1
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
..+++++|+|+||||||... -.++..+ . ...+++.+=-+.||
T Consensus 158 ~~~~nili~G~tgSGKTTll-~aL~~~i-p-------~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT-NAALREI-P-------AIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH-HHHHhhC-C-------CCCeEEEecCCCcc
Confidence 35678999999999999753 3333332 1 24556666555555
No 463
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=90.55 E-value=3.2 Score=40.16 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=29.0
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...+++|||++|.|.... ...+.+++..-+++..++++|..+
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCCh
Confidence 468999999999986432 455666777666666556666554
No 464
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.44 E-value=0.55 Score=45.07 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=22.0
Q ss_pred HHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 149 AQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 149 ~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
+.++..+..|+++++.|++|+|||.++
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 345555667889999999999999876
No 465
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.34 E-value=2.3 Score=39.78 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=17.5
Q ss_pred hHhCCC-CEEEEccCCChhHHHHH
Q 008430 154 VALSGR-DLLGCAETGSGKTAAFT 176 (565)
Q Consensus 154 ~l~~g~-~~li~a~TGsGKT~~~~ 176 (565)
.+..|+ -+.++|+-|||||+..-
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 344555 57899999999998753
No 466
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.30 E-value=0.36 Score=50.82 Aligned_cols=49 Identities=31% Similarity=0.356 Sum_probs=37.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+++++||||||||..+++|.+.. . +.-++|.=|.-+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 369999999999999998887633 2 224888889999988766655554
No 467
>PF12846 AAA_10: AAA-like domain
Probab=90.25 E-value=0.48 Score=46.37 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=30.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
.+++|+|+||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999998764 555555553 666888867655443
No 468
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.19 E-value=0.45 Score=43.49 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=23.9
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
++++||||+|||... ..++..+... .+.+++++-...++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc------CCcEEEEEcCCccc
Confidence 689999999999864 3344443321 23456666554443
No 469
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.15 E-value=1.6 Score=48.90 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.||+|+|||.++
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999875
No 470
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.13 E-value=0.81 Score=45.58 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46999999999999875
No 471
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.12 E-value=2.9 Score=45.32 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=25.4
Q ss_pred CCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
....+++||||+|.+.... ...+.+.+...+... ++++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4568999999999886432 334555555555444 4444444
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.09 E-value=0.92 Score=45.67 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+.++|+||+|+|||...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 6788999999999999764
No 473
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.08 E-value=1.2 Score=42.80 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHhHhC-C--CCEEEEccCCChhHHH
Q 008430 151 AMPVALS-G--RDLLGCAETGSGKTAA 174 (565)
Q Consensus 151 ~l~~l~~-g--~~~li~a~TGsGKT~~ 174 (565)
.++.+.. + +++++.||+|+|||..
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 3445443 3 4789999999999975
No 474
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=89.83 E-value=0.62 Score=51.33 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
+.+....++-|-+++..-.......+++|+|+|||-++ ..++.-+.... ..++++|+++...-..|..+.+.++
T Consensus 733 ~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~a-vqil~~lyhn~-----p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 733 KKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVA-VQILSVLYHNS-----PNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred ccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchh-hhhhhhhhhcC-----CCcceEEEEecccchhHHHHHHHhc
Confidence 34455678899999887777778999999999999887 56666666543 3667999999998888887776665
No 475
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.79 E-value=0.63 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.1
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 008430 155 ALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~ 175 (565)
+..|..+-++|+||+|||...
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~ 372 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI 372 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 446778889999999998753
No 476
>CHL00176 ftsH cell division protein; Validated
Probab=89.58 E-value=1.6 Score=47.46 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999875
No 477
>PRK04328 hypothetical protein; Provisional
Probab=89.50 E-value=0.78 Score=43.63 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..++|.|++|+|||..++- ++..... +|..++|+. +.+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~-fl~~~~~-------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQ-FLWNGLQ-------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHH-HHHHHHh-------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 345689999999999986533 3333233 256688887 344555566665554
No 478
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.40 E-value=0.37 Score=49.58 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
..++++|.|+||+|||.+ +..++..+... +.+++|+=|..++...
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHh
Confidence 456899999999999986 34555555542 5568888888877653
No 479
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=89.30 E-value=0.42 Score=51.59 Aligned_cols=71 Identities=10% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHhH--hCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAMPVA--LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l~~l--~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
+.+.+.+++.+... ++-...+|.. .+.++++++|.||+|||.+. ..++..+.. +|.+++|.=|.-+.+
T Consensus 157 ~~l~k~lk~~~~~s--~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~-------RGdrAIIyD~~GeFv 226 (732)
T PRK13700 157 KDVARMLKKDGKDS--DIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ-------RGDMVVIYDRSGEFV 226 (732)
T ss_pred HHHHHHHHhcCCCC--CeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEeCCCchH
Confidence 45556666655332 2333333332 35578999999999999864 777777665 366677777776666
Q ss_pred HHH
Q 008430 208 QQI 210 (565)
Q Consensus 208 ~Q~ 210 (565)
...
T Consensus 227 ~~F 229 (732)
T PRK13700 227 KSY 229 (732)
T ss_pred HHh
Confidence 543
No 480
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.27 E-value=0.37 Score=51.73 Aligned_cols=48 Identities=25% Similarity=0.174 Sum_probs=38.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.+++++||||+|||..+++|-+... +.-++|+=|.-|+........++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~ 206 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREK 206 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 3689999999999999999987652 23488888999998876665555
No 481
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.63 Score=44.01 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
-+.+|+.++.|+|||+.+
T Consensus 219 PKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 219 PKGVILYGEPGTGKTLLA 236 (440)
T ss_pred CCeeEEeCCCCCchhHHH
Confidence 367999999999999865
No 482
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.22 E-value=0.61 Score=48.93 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=25.3
Q ss_pred CHHHHHHHHhHhCCC-C-EEEEccCCChhHHHHHHHHHHH
Q 008430 145 TSIQAQAMPVALSGR-D-LLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~-~-~li~a~TGsGKT~~~~l~~l~~ 182 (565)
.+.|.+.+..+.... . ++++||||||||.+. ..++..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~ 265 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSR 265 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhc
Confidence 566666776665443 3 789999999999864 334444
No 483
>PRK09087 hypothetical protein; Validated
Probab=89.05 E-value=1 Score=42.09 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..++++|++|+|||...
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999864
No 484
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.99 E-value=1 Score=43.08 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=25.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
.|.-++|.|++|+|||..++- ++..... +|.+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~q-f~~~~a~-------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQ-FAVTQAS-------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHH-HHHHHHh-------CCCcEEEEEe
Confidence 345689999999999986533 3333222 3667888884
No 485
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.90 E-value=0.61 Score=45.00 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=27.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
.+.+++++|+||||||... ..++..+-. ...+++++-...|+
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~-------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPP-------EDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHT-------TTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhccc-------cccceEEeccccce
Confidence 4568999999999999864 444444322 13567777766665
No 486
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=4.4 Score=44.51 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=48.4
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.+|..||||.|||..+ -.+...+.. +...++-..-.|-.. .....++.+..+ -.|+.--||.
T Consensus 523 sFlF~GPTGVGKTELA-kaLA~~Lfg--------~e~aliR~DMSEy~E--kHsVSrLIGaPP-GYVGyeeGG~------ 584 (786)
T COG0542 523 SFLFLGPTGVGKTELA-KALAEALFG--------DEQALIRIDMSEYME--KHSVSRLIGAPP-GYVGYEEGGQ------ 584 (786)
T ss_pred EEEeeCCCcccHHHHH-HHHHHHhcC--------CCccceeechHHHHH--HHHHHHHhCCCC-CCceeccccc------
Confidence 4899999999999986 444444442 233566655544433 455666665533 3444433442
Q ss_pred HHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh
Q 008430 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 240 ~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|-....+ +.+++|.+||+...
T Consensus 585 ----------------LTEaVRr-----~PySViLlDEIEKA 605 (786)
T COG0542 585 ----------------LTEAVRR-----KPYSVILLDEIEKA 605 (786)
T ss_pred ----------------hhHhhhc-----CCCeEEEechhhhc
Confidence 1122222 23789999998864
No 487
>PRK05595 replicative DNA helicase; Provisional
Probab=88.84 E-value=1.3 Score=46.05 Aligned_cols=115 Identities=11% Similarity=0.154 Sum_probs=56.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|.||.|||..+ +-+...+... .|.+++|+... .-..|+..++-......+... +..|.....+
T Consensus 201 g~liviaarpg~GKT~~a-l~ia~~~a~~------~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~~~~--~~~~~l~~~e 270 (444)
T PRK05595 201 GDMILIAARPSMGKTTFA-LNIAEYAALR------EGKSVAIFSLE-MSKEQLAYKLLCSEANVDMLR--LRTGNLEDKD 270 (444)
T ss_pred CcEEEEEecCCCChHHHH-HHHHHHHHHH------cCCcEEEEecC-CCHHHHHHHHHHHhcCCCHHH--HhcCCCCHHH
Confidence 334788999999999865 4444433211 25668887653 345555555444332221111 1122223222
Q ss_pred HHHHH-----hCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhhc
Q 008430 238 QRSEL-----RGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 238 ~~~~~-----~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
+.... .....+.|- |+..+...+..-.. -..+++||||=.|.+..
T Consensus 271 ~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 271 WENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 21111 112334332 23334333222111 12488999999998753
No 488
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.73 E-value=2 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.9
Q ss_pred EEEEccCCChhHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIP 178 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~ 178 (565)
.++.||.|+|||.+|...
T Consensus 5 ~IvaG~NGsGKstv~~~~ 22 (187)
T COG4185 5 DIVAGPNGSGKSTVYAST 22 (187)
T ss_pred EEEecCCCCCceeeeecc
Confidence 478899999999988543
No 489
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=88.71 E-value=3.7 Score=39.67 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=40.9
Q ss_pred HHHHHHhHh-CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCC--CCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 148 QAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 148 Q~~~l~~l~-~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
|-+.|+... +|..+++.|+.|.|||++.+...+.....+.-. ...+.++||||.-. .--+.+.++++.++.
T Consensus 78 ~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslE-l~re~~L~Rl~~v~a 151 (402)
T COG3598 78 SPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLE-LYREDILERLEPVRA 151 (402)
T ss_pred ChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEec-cChHHHHHHHHHHHH
Confidence 444555443 555678889999999988765555443332211 22346678888742 223344556666554
No 490
>PRK06321 replicative DNA helicase; Provisional
Probab=88.67 E-value=6.5 Score=41.16 Aligned_cols=119 Identities=12% Similarity=0.148 Sum_probs=60.9
Q ss_pred HHHhHhCC----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceE
Q 008430 151 AMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 151 ~l~~l~~g----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
.++.+..| .=++|.|.+|.|||..+ +-+...+... .+..++|+.. ..=..|+..++-..... +..
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafa-l~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~~s~---v~~ 283 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALA-LNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICSRSE---VES 283 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHH-HHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhcC---CCH
Confidence 44444443 34788999999999865 4455443321 2455777764 33455555554433221 211
Q ss_pred EE-EECCCCHHHHH------HHHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 227 AI-VVGGTNIAEQR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 227 ~~-~~g~~~~~~~~------~~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.. ..|.....++. ..+ .+..+.|- |.+.+......-.. -..+++||||=.+.+.
T Consensus 284 ~~i~~~~l~~~e~~~~~~a~~~l-~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 284 KKISVGDLSGRDFQRIVSVVNEM-QEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHH-HcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 11 12333333332 122 23345554 44445433332111 1347899999999775
No 491
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.56 E-value=7.3 Score=39.45 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=70.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
++++|=-|+|||.++ --+..++.. .+.++++|+ ..|.-|. +.++.+.... ++.+-....+.+..+-
T Consensus 103 ImmvGLQGsGKTTt~-~KLA~~lkk-------~~~kvllVaaD~~RpAA~---eQL~~La~q~-~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 103 ILMVGLQGSGKTTTA-GKLAKYLKK-------KGKKVLLVAADTYRPAAI---EQLKQLAEQV-GVPFFGSGTEKDPVEI 170 (451)
T ss_pred EEEEeccCCChHhHH-HHHHHHHHH-------cCCceEEEecccCChHHH---HHHHHHHHHc-CCceecCCCCCCHHHH
Confidence 778999999999876 444444444 256676666 3344443 3333343321 2222111112211110
Q ss_pred HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhh-cCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHH
Q 008430 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 239 ~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 317 (565)
...-+.. +....+++||||=|-++. +...-..+..|-..+.|.--++.+-|+...+....
T Consensus 171 -----------------ak~al~~--ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 171 -----------------AKAALEK--AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred -----------------HHHHHHH--HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 0011111 222347889999887654 33345567777777877776777888886665555
Q ss_pred HHHH
Q 008430 318 AQEY 321 (565)
Q Consensus 318 ~~~~ 321 (565)
++.|
T Consensus 232 A~aF 235 (451)
T COG0541 232 AKAF 235 (451)
T ss_pred HHHH
Confidence 5544
No 492
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.43 E-value=0.79 Score=49.22 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=25.9
Q ss_pred CHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHH
Q 008430 145 TSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.+.|.+.+..+... .-+|++||||||||.+. ..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 45666666665543 34789999999999764 4455544
No 493
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.40 E-value=1.3 Score=41.62 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=63.1
Q ss_pred CCceeEecCCCCHHHHHHHHHHhhcCC----ceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccc-cCCCce
Q 008430 398 GLHAVALHGGRNQSDRESALRDFRNGS----TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTG-RGGSMG 472 (565)
Q Consensus 398 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~-R~g~~g 472 (565)
++.+..+.++.+.+. -.+.++. ..|+|+=+.++||+.+++..+..+.+.+....++.||.==-| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 566677775544332 2233332 778999999999999999999999999987766666543333 666678
Q ss_pred eEEEEeccccHHHHHHHHH
Q 008430 473 QATSFYTDRDMLLVAQIKK 491 (565)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~ 491 (565)
.|-++.+++-...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8888888776666666543
No 494
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.21 E-value=0.77 Score=43.51 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=17.2
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 008430 155 ALSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~ 174 (565)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999964
No 495
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=88.21 E-value=2.3 Score=42.26 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=17.8
Q ss_pred hHhCCCCEEEEccCCChhHHHH
Q 008430 154 VALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 154 ~l~~g~~~li~a~TGsGKT~~~ 175 (565)
....+..++|.|++||||+.++
T Consensus 18 ~a~~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 18 LAPLDRPVLIIGERGTGKELIA 39 (329)
T ss_pred HhCCCCCEEEECCCCChHHHHH
Confidence 3345567999999999999875
No 496
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=88.17 E-value=1 Score=48.26 Aligned_cols=75 Identities=17% Similarity=0.028 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
|...+-.-|+.|....+..+-.|+.||.|+|||++- +-+++.++...... .....+|++|-|...+.|....+..
T Consensus 375 g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vt-lkav~tLL~n~s~~-~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 375 GLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVT-LKAVDTLLLNSSGY-TEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred CceeecHHHHHHHHHHhhhhhheeecCCCCCceeeh-HHHHHHHHhccccc-ccccceeeeehhhHHHHHHHHHHHh
Confidence 334556679999999888888999999999999997 55666666543211 1234489999998888888776654
No 497
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.05 E-value=4.7 Score=39.82 Aligned_cols=40 Identities=8% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
...+++||||+|.+.... ...+.+.+..-++.. ++++.++
T Consensus 92 ~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t-~~il~~~ 131 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGV-FIILLCE 131 (313)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCCCe-EEEEEeC
Confidence 468899999999886332 334444555444444 4444444
No 498
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.04 E-value=1.2 Score=47.32 Aligned_cols=68 Identities=29% Similarity=0.490 Sum_probs=54.4
Q ss_pred EEEEecccchHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccCC-CCccCccE
Q 008430 377 TIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-LDVMGVAH 445 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idip~v~~ 445 (565)
+||+++|++.|..+++.+... ++.+..++|+++...+...+ +.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888653 46788999998876666444 446 99999995 56666 78888888
Q ss_pred EEE
Q 008430 446 VVN 448 (565)
Q Consensus 446 Vi~ 448 (565)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 874
No 499
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.03 E-value=3.5 Score=38.43 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=27.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
|.-+.|.|++|+|||..++. ++......... .+.+..++|+.....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~-ia~~~~~~~~~-~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQ-LAVEAQLPGEL-GGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEEeCCCCCChhHHHHH-HHHHhhccccc-CCCcceEEEEecCCC
Confidence 45588999999999987643 33333221100 011256888886543
No 500
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=87.95 E-value=1.5 Score=48.49 Aligned_cols=71 Identities=25% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.|++-|++|+... ...++|.|..|||||.+..--+. ++...... ....+|.|+=|+..+.++.+++.++++
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria-~li~~~~v---~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIA-YLIAAGGV---DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHH-HHHHcCCc---ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999887 45688899999999998654444 44443222 233488888888889999999998886
Done!