Query 008430
Match_columns 565
No_of_seqs 445 out of 3878
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.9E-61 2.7E-65 495.6 44.3 373 114-497 49-424 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.6E-57 8.8E-62 469.1 43.3 375 114-497 8-399 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.6E-56 5.4E-61 462.1 38.3 365 117-496 33-398 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.4E-54 4.8E-59 446.0 41.2 360 119-494 19-378 (400)
5 3eiq_A Eukaryotic initiation f 100.0 5E-55 1.7E-59 451.5 35.9 364 117-495 36-401 (414)
6 1xti_A Probable ATP-dependent 100.0 7.5E-54 2.6E-58 439.3 40.7 359 121-493 8-370 (391)
7 1hv8_A Putative ATP-dependent 100.0 2.2E-53 7.6E-58 431.8 39.5 354 120-495 5-359 (367)
8 3fht_A ATP-dependent RNA helic 100.0 3.7E-53 1.3E-57 437.2 39.5 361 117-494 21-393 (412)
9 3pey_A ATP-dependent RNA helic 100.0 6.1E-53 2.1E-57 433.0 39.5 357 119-494 3-370 (395)
10 1fuu_A Yeast initiation factor 100.0 1.1E-54 3.9E-59 445.8 24.1 363 116-494 16-379 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 1E-52 3.4E-57 451.2 38.1 369 120-493 16-410 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 5.4E-52 1.8E-56 445.4 39.5 361 128-493 79-461 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.3E-53 4.6E-58 448.5 21.4 359 118-493 89-459 (479)
14 2z0m_A 337AA long hypothetical 100.0 5.5E-51 1.9E-55 409.2 36.5 335 128-494 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 2.8E-52 9.6E-57 439.7 19.5 383 89-493 90-483 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 8.5E-50 2.9E-54 424.4 30.9 341 123-489 23-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 3.2E-49 1.1E-53 416.1 31.8 339 121-490 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 8.6E-48 2.9E-52 396.9 26.7 325 132-494 10-376 (414)
19 3tbk_A RIG-I helicase domain; 100.0 5.5E-44 1.9E-48 383.2 35.8 337 142-489 3-515 (555)
20 3l9o_A ATP-dependent RNA helic 100.0 1.6E-45 5.3E-50 415.5 24.8 341 120-488 161-605 (1108)
21 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-44 6.3E-49 396.8 31.9 337 121-483 8-410 (715)
22 4a2p_A RIG-I, retinoic acid in 100.0 3.4E-45 1.2E-49 392.7 24.1 332 140-484 4-511 (556)
23 2zj8_A DNA helicase, putative 100.0 1.1E-44 3.7E-49 398.4 26.9 332 122-482 2-388 (720)
24 2ykg_A Probable ATP-dependent 100.0 6.3E-45 2.2E-49 400.5 25.0 345 134-489 4-524 (696)
25 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-44 3.7E-49 397.3 23.9 332 122-483 2-390 (702)
26 2xgj_A ATP-dependent RNA helic 100.0 3.6E-43 1.2E-47 393.0 33.5 318 140-489 84-508 (1010)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-43 6.2E-48 392.3 30.7 336 138-484 243-752 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 8.4E-43 2.9E-47 367.8 31.3 326 143-484 9-478 (494)
29 4ddu_A Reverse gyrase; topoiso 100.0 3.7E-43 1.3E-47 396.1 28.9 323 138-496 74-505 (1104)
30 1tf5_A Preprotein translocase 100.0 3.2E-42 1.1E-46 365.6 33.8 323 138-483 79-547 (844)
31 4gl2_A Interferon-induced heli 100.0 6.5E-44 2.2E-48 392.6 15.3 329 142-481 6-519 (699)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-42 8.9E-47 386.7 27.4 335 138-483 243-751 (936)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 8.5E-43 2.9E-47 393.6 20.6 321 137-495 52-468 (1054)
34 4a4z_A Antiviral helicase SKI2 100.0 2.2E-41 7.4E-46 378.7 28.3 307 143-479 39-490 (997)
35 1gm5_A RECG; helicase, replica 100.0 6.8E-42 2.3E-46 370.9 21.1 326 132-489 358-705 (780)
36 2eyq_A TRCF, transcription-rep 100.0 3.7E-40 1.3E-44 374.1 34.5 323 127-482 587-923 (1151)
37 4f92_B U5 small nuclear ribonu 100.0 1.9E-40 6.6E-45 386.4 32.8 350 128-489 911-1316(1724)
38 2fsf_A Preprotein translocase 100.0 9.3E-41 3.2E-45 353.3 26.6 323 139-484 71-586 (853)
39 1nkt_A Preprotein translocase 100.0 2.2E-39 7.5E-44 343.0 36.1 325 138-485 107-621 (922)
40 2oca_A DAR protein, ATP-depend 100.0 5.4E-41 1.9E-45 355.5 20.7 312 142-479 112-453 (510)
41 4f92_B U5 small nuclear ribonu 100.0 4.2E-40 1.4E-44 383.7 25.8 343 139-489 75-481 (1724)
42 2fwr_A DNA repair protein RAD2 100.0 5.6E-40 1.9E-44 344.4 15.9 287 142-476 92-447 (472)
43 2whx_A Serine protease/ntpase/ 100.0 6.5E-41 2.2E-45 357.2 3.9 314 126-493 155-493 (618)
44 2xau_A PRE-mRNA-splicing facto 100.0 2.1E-38 7E-43 346.3 23.5 340 118-483 69-445 (773)
45 3fe2_A Probable ATP-dependent 100.0 4.2E-37 1.4E-41 292.5 29.2 236 92-332 4-239 (242)
46 2jlq_A Serine protease subunit 100.0 1.4E-39 4.7E-44 337.3 11.3 287 140-480 1-310 (451)
47 3h1t_A Type I site-specific re 100.0 1.4E-38 4.9E-43 342.4 18.0 319 142-481 177-558 (590)
48 3o8b_A HCV NS3 protease/helica 100.0 7.8E-39 2.7E-43 337.5 13.0 289 142-494 216-531 (666)
49 1yks_A Genome polyprotein [con 100.0 1.4E-39 4.9E-44 335.5 2.4 278 154-493 4-314 (440)
50 2wv9_A Flavivirin protease NS2 100.0 3E-38 1E-42 338.5 11.4 298 143-493 215-548 (673)
51 2z83_A Helicase/nucleoside tri 100.0 1.3E-37 4.4E-42 323.0 11.4 278 147-481 10-313 (459)
52 3dmq_A RNA polymerase-associat 100.0 1.2E-36 4E-41 341.3 18.9 333 142-494 152-626 (968)
53 1z63_A Helicase of the SNF2/RA 100.0 1.6E-35 5.6E-40 312.7 25.9 308 142-478 36-448 (500)
54 2v6i_A RNA helicase; membrane, 100.0 2E-36 6.7E-41 311.5 15.7 269 157-478 1-288 (431)
55 3iuy_A Probable ATP-dependent 100.0 6.2E-35 2.1E-39 275.2 23.9 216 112-329 10-227 (228)
56 1vec_A ATP-dependent RNA helic 100.0 5E-34 1.7E-38 264.7 26.3 203 121-328 3-205 (206)
57 1wrb_A DJVLGB; RNA helicase, D 100.0 2.1E-34 7.1E-39 276.1 24.4 223 118-341 20-250 (253)
58 2oxc_A Probable ATP-dependent 100.0 3.1E-34 1.1E-38 270.5 24.3 210 115-330 18-228 (230)
59 3ber_A Probable ATP-dependent 100.0 7.1E-34 2.4E-38 270.8 26.3 208 117-330 39-247 (249)
60 3mwy_W Chromo domain-containin 100.0 4.4E-34 1.5E-38 316.1 27.9 370 80-477 180-678 (800)
61 1z3i_X Similar to RAD54-like; 100.0 4.6E-33 1.6E-37 300.4 34.2 326 143-477 55-522 (644)
62 3rc3_A ATP-dependent RNA helic 100.0 1.5E-34 5.2E-39 308.8 22.3 276 152-480 149-444 (677)
63 1q0u_A Bstdead; DEAD protein, 100.0 3.1E-34 1.1E-38 268.6 21.5 208 120-332 3-213 (219)
64 3bor_A Human initiation factor 100.0 5.4E-34 1.8E-38 270.1 22.6 211 115-331 24-235 (237)
65 2pl3_A Probable ATP-dependent 100.0 4.4E-33 1.5E-37 263.9 28.3 227 93-331 6-233 (236)
66 1qde_A EIF4A, translation init 100.0 2E-33 6.9E-38 264.2 24.3 210 115-331 8-217 (224)
67 3jux_A Protein translocase sub 100.0 4.1E-32 1.4E-36 281.3 34.9 319 142-485 74-591 (822)
68 2gxq_A Heat resistant RNA depe 100.0 4.1E-33 1.4E-37 258.7 25.0 204 122-330 2-205 (207)
69 3fmo_B ATP-dependent RNA helic 100.0 1.8E-33 6.1E-38 275.1 22.9 206 118-331 89-298 (300)
70 1t6n_A Probable ATP-dependent 100.0 6.7E-33 2.3E-37 259.8 22.5 206 119-329 12-219 (220)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.3E-33 7.9E-38 311.8 21.4 320 142-480 270-708 (1038)
72 3ly5_A ATP-dependent RNA helic 100.0 1.4E-32 4.6E-37 264.1 23.8 204 121-326 52-258 (262)
73 3dkp_A Probable ATP-dependent 100.0 9.5E-33 3.2E-37 263.2 22.3 229 95-332 3-242 (245)
74 2ipc_A Preprotein translocase 100.0 3.1E-27 1.1E-31 249.4 36.3 322 138-484 75-701 (997)
75 1c4o_A DNA nucleotide excision 100.0 1.1E-27 3.8E-32 257.9 26.4 176 300-491 380-560 (664)
76 2d7d_A Uvrabc system protein B 100.0 1.7E-26 5.7E-31 248.7 28.1 176 300-491 386-566 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 5.2E-26 1.8E-30 201.7 17.4 150 336-494 6-155 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 1.9E-26 6.4E-31 209.4 14.5 167 320-496 10-177 (191)
79 1fuk_A Eukaryotic initiation f 99.9 2.8E-25 9.4E-30 197.5 17.9 147 339-494 3-150 (165)
80 1t5i_A C_terminal domain of A 99.9 2E-25 6.7E-30 199.5 15.4 148 338-494 4-152 (172)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.2E-25 4.2E-30 203.2 14.1 155 334-496 14-168 (185)
82 2rb4_A ATP-dependent RNA helic 99.9 3.3E-25 1.1E-29 199.0 16.0 149 337-494 5-160 (175)
83 3eaq_A Heat resistant RNA depe 99.9 1.8E-24 6E-29 200.2 16.9 145 342-495 8-152 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.2E-23 4.1E-28 203.6 17.1 147 340-495 3-149 (300)
85 3b6e_A Interferon-induced heli 99.9 2.7E-24 9.3E-29 200.5 11.5 167 139-309 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 1.8E-25 6.1E-30 199.7 0.0 146 340-494 4-150 (170)
87 2vl7_A XPD; helicase, unknown 99.9 1.4E-22 4.6E-27 214.1 20.5 102 374-481 384-521 (540)
88 1rif_A DAR protein, DNA helica 99.9 1.5E-22 5E-27 196.7 9.8 155 142-314 112-266 (282)
89 3crv_A XPD/RAD3 related DNA he 99.9 1.5E-19 5.1E-24 191.7 31.2 312 143-481 3-531 (551)
90 3llm_A ATP-dependent RNA helic 99.9 2.8E-21 9.6E-26 182.1 15.5 180 130-324 48-229 (235)
91 2fz4_A DNA repair protein RAD2 99.8 5.4E-20 1.8E-24 173.1 14.0 140 142-314 92-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 3.7E-18 1.3E-22 182.2 22.7 81 143-231 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-18 4.6E-23 166.3 13.9 127 348-481 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 8.3E-09 2.8E-13 110.0 9.8 145 145-309 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.5 8.5E-07 2.9E-11 93.5 12.7 122 142-307 188-313 (574)
96 2gk6_A Regulator of nonsense t 98.4 2.2E-06 7.4E-11 91.9 15.2 70 141-217 178-247 (624)
97 4b3f_X DNA-binding protein smu 98.4 4.5E-07 1.5E-11 97.8 9.9 68 142-217 188-256 (646)
98 2xzl_A ATP-dependent helicase 98.4 2.9E-06 9.8E-11 92.9 15.4 70 141-217 358-427 (802)
99 3upu_A ATP-dependent DNA helic 98.4 1.1E-06 3.6E-11 90.8 11.4 134 139-307 21-162 (459)
100 3lfu_A DNA helicase II; SF1 he 98.4 4.4E-05 1.5E-09 82.5 23.4 72 142-219 8-79 (647)
101 2wjy_A Regulator of nonsense t 98.3 4.6E-06 1.6E-10 91.2 15.1 69 141-216 354-422 (800)
102 3hgt_A HDA1 complex subunit 3; 97.9 2.6E-05 8.7E-10 74.5 8.2 124 349-484 107-240 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.00083 2.8E-08 66.5 13.4 74 143-222 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.3 0.0032 1.1E-07 66.8 14.6 147 143-312 163-315 (592)
105 3vkw_A Replicase large subunit 97.1 0.00096 3.3E-08 66.9 8.0 106 161-309 164-269 (446)
106 1pjr_A PCRA; DNA repair, DNA r 97.1 0.0022 7.5E-08 69.9 11.4 110 142-280 10-121 (724)
107 3ec2_A DNA replication protein 96.9 0.0026 9E-08 56.0 8.5 26 157-183 37-62 (180)
108 3te6_A Regulatory protein SIR3 96.9 0.0058 2E-07 58.8 10.9 27 158-185 45-71 (318)
109 2orw_A Thymidine kinase; TMTK, 96.6 0.0047 1.6E-07 54.6 7.6 39 158-204 3-41 (184)
110 2b8t_A Thymidine kinase; deoxy 96.6 0.0024 8.2E-08 58.2 5.5 91 158-282 12-102 (223)
111 1a5t_A Delta prime, HOLB; zinc 96.5 0.011 3.6E-07 57.9 10.1 40 144-184 3-49 (334)
112 2j9r_A Thymidine kinase; TK1, 96.5 0.0035 1.2E-07 56.2 5.8 40 158-205 28-67 (214)
113 1jbk_A CLPB protein; beta barr 96.5 0.04 1.4E-06 48.4 13.0 25 159-184 44-68 (195)
114 2kjq_A DNAA-related protein; s 96.5 0.0012 4.1E-08 56.2 2.6 19 157-175 35-53 (149)
115 1l8q_A Chromosomal replication 96.4 0.013 4.6E-07 56.9 10.3 26 158-184 37-62 (324)
116 1xx6_A Thymidine kinase; NESG, 96.4 0.0065 2.2E-07 53.9 7.1 39 158-204 8-46 (191)
117 2zpa_A Uncharacterized protein 96.3 0.009 3.1E-07 63.0 8.7 112 143-310 175-288 (671)
118 1uaa_A REP helicase, protein ( 96.3 0.006 2.1E-07 65.9 7.5 71 143-219 2-72 (673)
119 2p65_A Hypothetical protein PF 96.2 0.032 1.1E-06 48.8 11.0 25 158-183 43-67 (187)
120 1d2n_A N-ethylmaleimide-sensit 96.2 0.061 2.1E-06 50.6 13.4 17 159-175 65-81 (272)
121 3u61_B DNA polymerase accessor 96.2 0.02 6.7E-07 55.7 10.1 39 269-307 105-143 (324)
122 2w58_A DNAI, primosome compone 96.1 0.027 9.2E-07 50.4 9.9 25 159-184 55-79 (202)
123 3h4m_A Proteasome-activating n 96.0 0.042 1.4E-06 52.1 11.4 54 120-175 13-68 (285)
124 2chg_A Replication factor C sm 96.0 0.051 1.7E-06 49.0 11.5 41 268-309 101-141 (226)
125 2orv_A Thymidine kinase; TP4A 96.0 0.02 6.8E-07 51.8 8.2 40 158-205 19-58 (234)
126 1w4r_A Thymidine kinase; type 95.9 0.021 7.2E-07 50.3 7.7 38 158-203 20-57 (195)
127 3kl4_A SRP54, signal recogniti 95.9 0.039 1.3E-06 55.4 10.6 54 268-321 178-234 (433)
128 2v1u_A Cell division control p 95.8 0.047 1.6E-06 54.2 11.2 25 158-183 44-68 (387)
129 2qby_B CDC6 homolog 3, cell di 95.8 0.026 8.9E-07 56.1 9.0 24 159-183 46-69 (384)
130 2z4s_A Chromosomal replication 95.7 0.055 1.9E-06 54.9 11.1 25 159-184 131-155 (440)
131 3eie_A Vacuolar protein sortin 95.7 0.099 3.4E-06 50.6 12.5 51 119-175 13-68 (322)
132 3e2i_A Thymidine kinase; Zn-bi 95.6 0.011 3.7E-07 52.9 4.6 40 158-205 28-67 (219)
133 3u4q_A ATP-dependent helicase/ 95.5 0.024 8.2E-07 65.5 8.3 110 142-262 9-118 (1232)
134 3pfi_A Holliday junction ATP-d 95.5 0.12 4E-06 50.4 12.2 17 159-175 56-72 (338)
135 3cf0_A Transitional endoplasmi 95.4 0.13 4.5E-06 49.1 12.2 55 119-175 10-66 (301)
136 3syl_A Protein CBBX; photosynt 95.4 0.032 1.1E-06 53.7 7.9 24 159-183 68-91 (309)
137 4b4t_M 26S protease regulatory 95.4 0.099 3.4E-06 52.5 11.4 56 117-175 174-232 (434)
138 3bos_A Putative DNA replicatio 95.2 0.028 9.4E-07 51.7 6.4 26 157-183 51-76 (242)
139 4b4t_J 26S protease regulatory 95.1 0.16 5.3E-06 50.3 11.7 54 119-175 143-199 (405)
140 1fnn_A CDC6P, cell division co 95.0 0.024 8.3E-07 56.4 5.8 16 160-175 46-61 (389)
141 2gno_A DNA polymerase III, gam 95.0 0.099 3.4E-06 50.1 9.8 39 268-307 81-119 (305)
142 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.46 1.6E-05 44.0 14.4 18 158-175 39-56 (262)
143 3uk6_A RUVB-like 2; hexameric 95.0 0.22 7.6E-06 49.0 12.6 23 159-182 71-93 (368)
144 1gm5_A RECG; helicase, replica 94.8 0.13 4.4E-06 56.0 11.1 75 376-450 419-498 (780)
145 2qby_A CDC6 homolog 1, cell di 94.8 0.4 1.4E-05 47.3 14.0 25 158-183 45-69 (386)
146 3dm5_A SRP54, signal recogniti 94.7 0.12 4.1E-06 51.9 9.8 130 160-321 102-235 (443)
147 1g5t_A COB(I)alamin adenosyltr 94.7 0.53 1.8E-05 41.4 12.7 49 268-316 119-169 (196)
148 4b4t_K 26S protease regulatory 94.6 0.34 1.2E-05 48.5 12.6 55 118-175 166-223 (428)
149 1njg_A DNA polymerase III subu 94.4 0.96 3.3E-05 40.9 14.8 16 160-175 47-62 (250)
150 1iqp_A RFCS; clamp loader, ext 94.4 0.1 3.5E-06 50.4 8.3 39 268-307 109-147 (327)
151 1sxj_C Activator 1 40 kDa subu 94.3 0.13 4.3E-06 50.3 8.9 39 268-307 109-147 (340)
152 2qp9_X Vacuolar protein sortin 94.3 0.13 4.4E-06 50.6 8.8 17 159-175 85-101 (355)
153 3d8b_A Fidgetin-like protein 1 94.3 0.75 2.6E-05 45.0 14.4 18 158-175 117-134 (357)
154 3hu3_A Transitional endoplasmi 94.1 0.17 5.7E-06 52.0 9.5 42 270-311 298-349 (489)
155 1sxj_D Activator 1 41 kDa subu 94.1 0.22 7.4E-06 48.7 10.0 40 268-308 132-171 (353)
156 4b4t_H 26S protease regulatory 94.1 0.41 1.4E-05 48.1 11.9 55 118-175 203-260 (467)
157 3vfd_A Spastin; ATPase, microt 94.0 0.45 1.5E-05 47.3 12.3 18 158-175 148-165 (389)
158 1sxj_A Activator 1 95 kDa subu 94.0 0.27 9.3E-06 51.0 11.0 40 269-310 148-189 (516)
159 3pvs_A Replication-associated 93.9 0.061 2.1E-06 54.6 5.8 17 159-175 51-67 (447)
160 1hqc_A RUVB; extended AAA-ATPa 93.9 0.23 7.9E-06 47.9 9.7 17 159-175 39-55 (324)
161 1jr3_A DNA polymerase III subu 93.8 0.51 1.7E-05 46.4 12.3 38 268-306 118-155 (373)
162 1sxj_E Activator 1 40 kDa subu 93.7 0.2 6.7E-06 49.1 9.0 42 268-310 133-174 (354)
163 2dr3_A UPF0273 protein PH0284; 93.6 0.22 7.4E-06 45.8 8.7 50 157-215 22-71 (247)
164 1sxj_B Activator 1 37 kDa subu 93.6 0.17 5.8E-06 48.7 8.2 38 269-307 107-144 (323)
165 1w5s_A Origin recognition comp 93.2 0.2 6.8E-06 50.1 8.2 16 160-175 52-69 (412)
166 2r6a_A DNAB helicase, replicat 92.9 0.55 1.9E-05 47.7 11.1 50 157-214 202-251 (454)
167 3hjh_A Transcription-repair-co 92.8 0.43 1.5E-05 48.7 10.0 52 157-219 13-64 (483)
168 2q6t_A DNAB replication FORK h 92.7 0.6 2.1E-05 47.3 11.0 114 158-283 200-324 (444)
169 2ce7_A Cell division protein F 92.2 2.7 9.2E-05 42.7 14.8 17 159-175 50-66 (476)
170 3oiy_A Reverse gyrase helicase 91.7 0.32 1.1E-05 48.7 7.6 75 374-448 64-145 (414)
171 2fna_A Conserved hypothetical 91.4 5.4 0.00018 38.4 15.9 53 253-310 124-179 (357)
172 3co5_A Putative two-component 91.0 0.17 6E-06 42.2 3.9 20 156-175 25-44 (143)
173 3n70_A Transport activator; si 90.8 0.2 6.8E-06 41.9 4.1 19 157-175 23-41 (145)
174 2qgz_A Helicase loader, putati 90.8 0.36 1.2E-05 46.2 6.4 26 158-184 152-177 (308)
175 2l8b_A Protein TRAI, DNA helic 89.8 0.34 1.2E-05 41.8 4.7 120 145-309 36-158 (189)
176 2eyu_A Twitching motility prot 89.8 0.32 1.1E-05 45.3 5.0 21 155-175 22-42 (261)
177 2eyq_A TRCF, transcription-rep 89.7 1.2 4E-05 51.0 10.4 74 375-448 653-731 (1151)
178 3cmu_A Protein RECA, recombina 89.5 0.47 1.6E-05 56.4 7.0 47 152-206 1415-1467(2050)
179 1ls1_A Signal recognition part 89.3 4 0.00014 38.5 12.4 18 158-175 98-115 (295)
180 3io5_A Recombination and repai 89.3 0.57 2E-05 44.6 6.2 43 160-208 30-72 (333)
181 1r6b_X CLPA protein; AAA+, N-t 89.3 1.6 5.5E-05 47.5 10.9 18 158-175 207-224 (758)
182 2p6n_A ATP-dependent RNA helic 89.0 4.8 0.00016 35.1 11.8 72 194-276 54-129 (191)
183 1qvr_A CLPB protein; coiled co 88.6 1.7 5.8E-05 48.1 10.5 24 159-183 192-215 (854)
184 1n0w_A DNA repair protein RAD5 88.2 1.2 4.2E-05 40.4 7.8 19 157-175 23-41 (243)
185 2hjv_A ATP-dependent RNA helic 87.7 3.2 0.00011 35.0 9.6 73 194-277 35-111 (163)
186 4a1f_A DNAB helicase, replicat 87.7 0.5 1.7E-05 45.7 4.8 52 157-217 45-96 (338)
187 3cf2_A TER ATPase, transitiona 87.5 0.79 2.7E-05 49.7 6.7 17 159-175 239-255 (806)
188 4ddu_A Reverse gyrase; topoiso 87.4 0.93 3.2E-05 51.5 7.5 75 374-448 121-202 (1104)
189 2pl3_A Probable ATP-dependent 87.4 2.8 9.4E-05 37.9 9.6 54 374-432 97-154 (236)
190 3fe2_A Probable ATP-dependent 87.3 3.6 0.00012 37.4 10.4 72 373-448 101-182 (242)
191 3jvv_A Twitching mobility prot 86.9 1.3 4.3E-05 43.3 7.3 19 157-175 122-140 (356)
192 1t6n_A Probable ATP-dependent 86.7 2.5 8.4E-05 37.7 8.8 55 375-432 83-142 (220)
193 1e9r_A Conjugal transfer prote 86.6 0.74 2.5E-05 46.5 5.7 43 158-208 53-95 (437)
194 1fuk_A Eukaryotic initiation f 85.6 5.7 0.0002 33.5 10.1 73 194-277 30-106 (165)
195 3e70_C DPA, signal recognition 85.3 9.9 0.00034 36.4 12.6 53 269-321 211-264 (328)
196 4b4t_L 26S protease subunit RP 85.2 0.72 2.5E-05 46.2 4.6 55 118-175 175-232 (437)
197 1lv7_A FTSH; alpha/beta domain 85.0 1.1 3.8E-05 41.3 5.6 17 159-175 46-62 (257)
198 1ypw_A Transitional endoplasmi 84.8 3.6 0.00012 45.0 10.3 19 157-175 237-255 (806)
199 2v1x_A ATP-dependent DNA helic 84.1 1.8 6E-05 45.6 7.2 58 375-432 85-144 (591)
200 2rb4_A ATP-dependent RNA helic 83.9 5.6 0.00019 34.0 9.3 71 194-275 34-108 (175)
201 1oyw_A RECQ helicase, ATP-depe 83.7 2 6.9E-05 44.4 7.4 58 375-432 66-123 (523)
202 1xwi_A SKD1 protein; VPS4B, AA 83.6 1.3 4.3E-05 42.7 5.5 50 120-175 8-62 (322)
203 2l82_A Designed protein OR32; 83.4 4.5 0.00015 30.8 7.1 51 377-427 5-55 (162)
204 1p9r_A General secretion pathw 83.4 2.1 7.3E-05 42.7 7.1 26 149-174 156-183 (418)
205 2zts_A Putative uncharacterize 83.3 1.1 3.7E-05 41.0 4.7 52 157-216 29-80 (251)
206 3hws_A ATP-dependent CLP prote 83.2 1.3 4.4E-05 43.4 5.5 18 158-175 51-68 (363)
207 1ofh_A ATP-dependent HSL prote 82.7 1.8 6.3E-05 40.9 6.3 18 158-175 50-67 (310)
208 3eaq_A Heat resistant RNA depe 82.6 7 0.00024 34.7 9.7 71 194-275 31-105 (212)
209 2oxc_A Probable ATP-dependent 82.4 3.3 0.00011 37.2 7.6 70 374-448 92-172 (230)
210 3nwn_A Kinesin-like protein KI 82.4 0.86 2.9E-05 44.4 3.7 25 151-175 96-122 (359)
211 1u0j_A DNA replication protein 82.1 2.9 9.9E-05 38.7 7.0 43 130-175 73-121 (267)
212 3ber_A Probable ATP-dependent 82.1 10 0.00035 34.6 10.9 71 374-448 111-192 (249)
213 3ly5_A ATP-dependent RNA helic 82.1 8.4 0.00029 35.5 10.4 71 374-448 126-207 (262)
214 2gxq_A Heat resistant RNA depe 82.0 4.3 0.00015 35.6 8.1 72 373-448 71-150 (207)
215 3b85_A Phosphate starvation-in 81.8 1.1 3.9E-05 39.9 4.1 31 145-175 9-39 (208)
216 3nbx_X ATPase RAVA; AAA+ ATPas 81.8 1.4 4.9E-05 45.1 5.3 27 149-175 32-58 (500)
217 2bjv_A PSP operon transcriptio 81.8 1.1 3.7E-05 41.6 4.1 19 157-175 28-46 (265)
218 1tue_A Replication protein E1; 81.8 1.8 6.1E-05 38.3 5.1 50 130-182 28-81 (212)
219 4b4t_I 26S protease regulatory 81.8 0.69 2.4E-05 46.0 2.8 55 118-175 176-233 (437)
220 2r44_A Uncharacterized protein 81.3 0.76 2.6E-05 44.4 2.9 23 153-175 41-63 (331)
221 1bg2_A Kinesin; motor protein, 81.1 1 3.6E-05 43.1 3.7 25 151-175 69-95 (325)
222 3bor_A Human initiation factor 81.1 2.7 9.4E-05 38.1 6.5 72 374-448 98-179 (237)
223 2ffh_A Protein (FFH); SRP54, s 81.0 8.5 0.00029 38.3 10.4 34 160-201 100-133 (425)
224 3b9p_A CG5977-PA, isoform A; A 80.7 1.8 6.1E-05 40.9 5.3 18 158-175 54-71 (297)
225 2j37_W Signal recognition part 80.3 10 0.00034 38.8 10.9 35 160-202 103-137 (504)
226 3dc4_A Kinesin-like protein NO 80.3 1 3.6E-05 43.5 3.4 25 151-175 86-112 (344)
227 3iuy_A Probable ATP-dependent 80.0 3 0.0001 37.4 6.4 72 373-448 93-173 (228)
228 2vvg_A Kinesin-2; motor protei 79.9 1.3 4.3E-05 43.0 3.9 25 151-175 81-107 (350)
229 1goj_A Kinesin, kinesin heavy 79.9 1.2 4.1E-05 43.3 3.7 25 151-175 72-98 (355)
230 3b6u_A Kinesin-like protein KI 79.8 1.3 4.3E-05 43.4 3.8 25 151-175 93-119 (372)
231 2r8r_A Sensor protein; KDPD, P 79.7 1.9 6.7E-05 38.7 4.8 28 157-185 4-32 (228)
232 2h58_A Kinesin-like protein KI 79.7 1.3 4.4E-05 42.6 3.9 26 150-175 71-98 (330)
233 1t5c_A CENP-E protein, centrom 79.6 1.3 4.4E-05 43.0 3.8 25 151-175 69-95 (349)
234 3lre_A Kinesin-like protein KI 79.5 1.2 4.3E-05 43.2 3.7 25 151-175 97-123 (355)
235 2y65_A Kinesin, kinesin heavy 79.5 1.3 4.3E-05 43.3 3.7 25 151-175 76-102 (365)
236 4a14_A Kinesin, kinesin-like p 79.5 1.3 4.3E-05 43.0 3.7 25 151-175 75-101 (344)
237 2nr8_A Kinesin-like protein KI 79.4 1.3 4.5E-05 43.1 3.8 25 151-175 95-121 (358)
238 3gbj_A KIF13B protein; kinesin 79.3 1.3 4.5E-05 43.0 3.8 25 151-175 84-110 (354)
239 1vec_A ATP-dependent RNA helic 79.3 5.6 0.00019 34.8 7.9 71 374-448 71-152 (206)
240 2zfi_A Kinesin-like protein KI 79.3 1.3 4.6E-05 43.2 3.9 25 151-175 81-107 (366)
241 1v8k_A Kinesin-like protein KI 79.2 1.3 4.4E-05 43.9 3.7 25 151-175 146-172 (410)
242 2r62_A Cell division protease 79.1 1.2 4E-05 41.4 3.4 18 158-175 44-61 (268)
243 2w0m_A SSO2452; RECA, SSPF, un 79.0 1.8 6.2E-05 38.9 4.5 50 157-215 22-71 (235)
244 1xti_A Probable ATP-dependent 78.9 6 0.00021 38.7 8.7 72 374-448 76-158 (391)
245 1f9v_A Kinesin-like protein KA 78.8 1.4 4.7E-05 42.7 3.8 25 151-175 76-102 (347)
246 3t0q_A AGR253WP; kinesin, alph 78.5 1.4 4.8E-05 42.7 3.8 25 151-175 77-103 (349)
247 1x88_A Kinesin-like protein KI 78.5 1.3 4.5E-05 43.1 3.5 25 151-175 80-106 (359)
248 3bh0_A DNAB-like replicative h 78.3 3.8 0.00013 39.1 6.8 52 157-217 67-118 (315)
249 4ag6_A VIRB4 ATPase, type IV s 78.1 2 6.9E-05 42.5 4.9 42 157-206 34-75 (392)
250 2px0_A Flagellar biosynthesis 78.1 2.4 8.1E-05 40.1 5.2 18 158-175 105-122 (296)
251 4etp_A Kinesin-like protein KA 78.0 1.6 5.4E-05 43.3 4.0 25 151-175 132-158 (403)
252 2heh_A KIF2C protein; kinesin, 77.9 1.4 4.9E-05 43.2 3.6 25 151-175 126-152 (387)
253 2c9o_A RUVB-like 1; hexameric 77.7 2.3 8E-05 43.1 5.3 18 158-175 63-80 (456)
254 2oap_1 GSPE-2, type II secreti 77.7 1.9 6.4E-05 44.4 4.6 39 134-174 237-276 (511)
255 2wbe_C Bipolar kinesin KRP-130 77.5 1.4 4.8E-05 43.1 3.4 25 151-175 92-118 (373)
256 2owm_A Nckin3-434, related to 77.3 1.6 5.5E-05 43.8 3.9 25 151-175 128-154 (443)
257 2jgn_A DBX, DDX3, ATP-dependen 77.0 4.9 0.00017 34.8 6.6 71 194-275 46-120 (185)
258 3hr8_A Protein RECA; alpha and 77.0 1.9 6.6E-05 41.9 4.2 41 158-206 61-101 (356)
259 1ojl_A Transcriptional regulat 76.9 1.7 5.8E-05 41.4 3.8 19 157-175 24-42 (304)
260 2x8a_A Nuclear valosin-contain 76.9 0.53 1.8E-05 44.2 0.2 53 120-175 6-61 (274)
261 2qmh_A HPR kinase/phosphorylas 76.8 1 3.5E-05 39.6 2.0 19 157-175 33-51 (205)
262 1kgd_A CASK, peripheral plasma 76.7 1.2 4E-05 38.6 2.4 19 157-175 4-22 (180)
263 3u06_A Protein claret segregat 76.7 1.7 6E-05 43.1 3.9 26 150-175 129-156 (412)
264 3i5x_A ATP-dependent RNA helic 76.5 31 0.0011 35.6 13.8 77 193-277 338-418 (563)
265 1t5i_A C_terminal domain of A 76.5 13 0.00044 31.5 9.1 73 194-277 31-107 (172)
266 3cob_A Kinesin heavy chain-lik 76.5 1.5 5E-05 42.9 3.2 25 151-175 71-97 (369)
267 2rep_A Kinesin-like protein KI 76.4 1.8 6E-05 42.4 3.8 25 151-175 107-133 (376)
268 3bfn_A Kinesin-like protein KI 76.3 1.3 4.6E-05 43.4 2.9 25 151-175 90-116 (388)
269 3foz_A TRNA delta(2)-isopenten 76.2 1.6 5.5E-05 41.4 3.3 15 161-175 13-27 (316)
270 3vaa_A Shikimate kinase, SK; s 76.1 1.3 4.3E-05 39.1 2.5 19 157-175 24-42 (199)
271 3t15_A Ribulose bisphosphate c 76.0 1.6 5.6E-05 41.2 3.4 17 159-175 37-53 (293)
272 1ixz_A ATP-dependent metallopr 75.8 4.4 0.00015 37.1 6.3 55 118-175 10-66 (254)
273 3a8t_A Adenylate isopentenyltr 75.7 1.5 5E-05 42.2 2.9 17 159-175 41-57 (339)
274 3exa_A TRNA delta(2)-isopenten 75.4 1.6 5.5E-05 41.4 3.1 16 160-175 5-20 (322)
275 2zan_A Vacuolar protein sortin 75.3 3.6 0.00012 41.4 5.9 18 158-175 167-184 (444)
276 1u94_A RECA protein, recombina 75.2 2.3 7.8E-05 41.4 4.2 42 157-206 62-103 (356)
277 2db3_A ATP-dependent RNA helic 75.0 11 0.00036 37.8 9.3 71 374-448 129-209 (434)
278 2ewv_A Twitching motility prot 74.9 2 6.8E-05 42.2 3.8 20 156-175 134-153 (372)
279 1wrb_A DJVLGB; RNA helicase, D 74.7 21 0.00073 32.3 10.7 71 374-448 100-180 (253)
280 2gza_A Type IV secretion syste 74.6 2 6.7E-05 42.1 3.6 20 155-174 172-191 (361)
281 1w36_B RECB, exodeoxyribonucle 74.3 5.5 0.00019 45.7 7.8 60 160-219 18-81 (1180)
282 3trf_A Shikimate kinase, SK; a 74.0 1.5 5.1E-05 38.0 2.4 18 158-175 5-22 (185)
283 3lda_A DNA repair protein RAD5 73.9 12 0.00039 37.1 9.0 17 159-175 179-195 (400)
284 2xxa_A Signal recognition part 73.9 12 0.00042 37.3 9.3 42 160-208 102-145 (433)
285 1lvg_A Guanylate kinase, GMP k 73.8 1.6 5.4E-05 38.5 2.5 19 157-175 3-21 (198)
286 2zr9_A Protein RECA, recombina 73.7 2.9 0.0001 40.6 4.6 39 158-204 61-99 (349)
287 1um8_A ATP-dependent CLP prote 73.7 4.9 0.00017 39.4 6.4 18 158-175 72-89 (376)
288 2ze6_A Isopentenyl transferase 73.4 2.2 7.5E-05 39.3 3.4 15 161-175 4-18 (253)
289 3iij_A Coilin-interacting nucl 73.1 1.5 5.2E-05 37.7 2.2 19 157-175 10-28 (180)
290 4dzz_A Plasmid partitioning pr 73.0 5.2 0.00018 35.0 5.8 31 246-279 55-85 (206)
291 3tau_A Guanylate kinase, GMP k 72.8 1.7 5.8E-05 38.7 2.5 19 157-175 7-25 (208)
292 3sqw_A ATP-dependent RNA helic 72.7 44 0.0015 34.7 13.8 78 193-278 287-368 (579)
293 2z43_A DNA repair and recombin 72.6 3.5 0.00012 39.5 4.9 64 151-216 95-164 (324)
294 1xp8_A RECA protein, recombina 72.6 3.2 0.00011 40.5 4.6 40 158-205 74-113 (366)
295 2cvh_A DNA repair and recombin 72.3 3.1 0.00011 36.9 4.2 36 157-203 19-54 (220)
296 4fcw_A Chaperone protein CLPB; 72.1 3.1 0.00011 39.4 4.4 16 160-175 49-64 (311)
297 1cr0_A DNA primase/helicase; R 72.0 3.8 0.00013 38.6 4.9 39 157-202 34-72 (296)
298 1nlf_A Regulatory protein REPA 72.0 6 0.00021 36.8 6.2 62 154-217 26-90 (279)
299 2pt7_A CAG-ALFA; ATPase, prote 72.0 1.8 6E-05 41.8 2.5 19 156-174 169-187 (330)
300 2i4i_A ATP-dependent RNA helic 71.8 17 0.00057 35.8 9.9 72 193-275 275-350 (417)
301 1wp9_A ATP-dependent RNA helic 71.7 14 0.00047 37.0 9.5 90 348-448 32-131 (494)
302 1rj9_A FTSY, signal recognitio 71.6 4.3 0.00015 38.5 5.1 36 158-201 102-137 (304)
303 1zp6_A Hypothetical protein AT 71.6 1.4 4.7E-05 38.4 1.5 20 156-175 7-26 (191)
304 3lw7_A Adenylate kinase relate 71.5 1.8 6E-05 36.9 2.2 15 161-175 4-18 (179)
305 2qor_A Guanylate kinase; phosp 71.4 1.9 6.4E-05 38.2 2.4 20 156-175 10-29 (204)
306 1qhx_A CPT, protein (chloramph 71.2 1.9 6.5E-05 36.9 2.4 18 158-175 3-20 (178)
307 1f2t_A RAD50 ABC-ATPase; DNA d 71.1 3 0.0001 34.8 3.5 22 161-184 26-47 (149)
308 1y63_A LMAJ004144AAA protein; 70.9 2 6.8E-05 37.2 2.4 19 157-175 9-27 (184)
309 1qde_A EIF4A, translation init 70.8 5.3 0.00018 35.6 5.4 70 374-448 82-161 (224)
310 3eph_A TRNA isopentenyltransfe 70.7 2.6 8.8E-05 41.6 3.3 21 161-182 5-25 (409)
311 2j41_A Guanylate kinase; GMP, 70.6 2 6.8E-05 37.9 2.4 20 156-175 4-23 (207)
312 3ney_A 55 kDa erythrocyte memb 70.3 2.2 7.4E-05 37.6 2.5 19 157-175 18-36 (197)
313 3u4q_B ATP-dependent helicase/ 70.3 3.9 0.00013 46.9 5.3 56 348-406 319-375 (1166)
314 3bgw_A DNAB-like replicative h 70.3 4.2 0.00014 40.9 4.9 51 157-216 196-246 (444)
315 1lsh_B Lipovitellin (LV-2); vi 70.2 0.91 3.1E-05 43.2 0.0 9 160-168 128-136 (319)
316 1sky_E F1-ATPase, F1-ATP synth 70.1 8.2 0.00028 38.8 6.9 23 154-176 147-169 (473)
317 3crm_A TRNA delta(2)-isopenten 70.0 2.7 9.2E-05 40.2 3.3 16 160-175 7-22 (323)
318 3b9q_A Chloroplast SRP recepto 69.9 4.1 0.00014 38.6 4.5 35 159-201 101-135 (302)
319 3pxg_A Negative regulator of g 69.8 5.4 0.00019 40.5 5.7 24 159-183 202-225 (468)
320 3d3q_A TRNA delta(2)-isopenten 69.3 2.5 8.7E-05 40.6 2.9 16 160-175 9-24 (340)
321 1vma_A Cell division protein F 69.0 4.4 0.00015 38.5 4.5 16 160-175 106-121 (306)
322 1kag_A SKI, shikimate kinase I 68.8 2.5 8.7E-05 35.9 2.6 18 158-175 4-21 (173)
323 1z6g_A Guanylate kinase; struc 68.7 2.6 8.9E-05 37.8 2.8 18 157-174 22-39 (218)
324 3i32_A Heat resistant RNA depe 68.7 15 0.00051 34.6 8.2 73 194-277 28-104 (300)
325 1gku_B Reverse gyrase, TOP-RG; 68.4 8.8 0.0003 43.4 7.6 72 375-448 100-181 (1054)
326 3tr0_A Guanylate kinase, GMP k 68.4 2.4 8.2E-05 37.3 2.5 19 157-175 6-24 (205)
327 3f9v_A Minichromosome maintena 68.4 2.7 9.3E-05 44.1 3.2 16 160-175 329-344 (595)
328 2ehv_A Hypothetical protein PH 68.3 5 0.00017 36.4 4.7 20 156-175 28-47 (251)
329 1q0u_A Bstdead; DEAD protein, 68.1 4.1 0.00014 36.3 4.0 71 374-448 72-156 (219)
330 2iut_A DNA translocase FTSK; n 67.7 5.7 0.0002 41.1 5.3 26 159-185 215-240 (574)
331 1g41_A Heat shock protein HSLU 67.4 9.1 0.00031 38.3 6.6 18 158-175 50-67 (444)
332 1ex7_A Guanylate kinase; subst 67.2 2.8 9.4E-05 36.6 2.5 17 159-175 2-18 (186)
333 2yvu_A Probable adenylyl-sulfa 67.0 5.8 0.0002 34.2 4.7 18 158-175 13-30 (186)
334 3cf2_A TER ATPase, transitiona 66.9 2.6 8.8E-05 45.7 2.7 57 118-175 471-528 (806)
335 3a00_A Guanylate kinase, GMP k 66.6 2.9 0.0001 36.2 2.6 17 159-175 2-18 (186)
336 1zu4_A FTSY; GTPase, signal re 66.6 5.5 0.00019 38.1 4.7 34 160-201 107-140 (320)
337 1ry6_A Internal kinesin; kines 66.3 3.6 0.00012 40.0 3.3 19 157-175 82-102 (360)
338 4gp7_A Metallophosphoesterase; 66.1 2.4 8.3E-05 36.2 1.9 19 157-175 8-26 (171)
339 1kht_A Adenylate kinase; phosp 65.9 2.8 9.6E-05 36.3 2.3 18 158-175 3-20 (192)
340 1xjc_A MOBB protein homolog; s 65.9 7.8 0.00027 33.0 5.0 24 160-184 6-29 (169)
341 3kb2_A SPBC2 prophage-derived 65.8 2.7 9.3E-05 35.6 2.2 16 160-175 3-18 (173)
342 1ly1_A Polynucleotide kinase; 65.7 2.8 9.4E-05 35.9 2.2 15 161-175 5-19 (181)
343 2ius_A DNA translocase FTSK; n 65.7 7 0.00024 39.9 5.5 26 158-184 167-192 (512)
344 1g8p_A Magnesium-chelatase 38 65.6 1.8 6.1E-05 41.9 1.1 18 158-175 45-62 (350)
345 2og2_A Putative signal recogni 65.6 5.4 0.00018 38.8 4.5 34 160-201 159-192 (359)
346 1nks_A Adenylate kinase; therm 65.4 9.8 0.00034 32.7 5.9 16 160-175 3-18 (194)
347 4eun_A Thermoresistant glucoki 65.2 3 0.0001 36.6 2.5 19 157-175 28-46 (200)
348 1knq_A Gluconate kinase; ALFA/ 64.7 2.6 9E-05 36.0 1.9 18 158-175 8-25 (175)
349 3dkp_A Probable ATP-dependent 64.2 3.3 0.00011 37.7 2.5 72 374-448 98-181 (245)
350 1znw_A Guanylate kinase, GMP k 63.9 3.3 0.00011 36.6 2.5 22 154-175 16-37 (207)
351 3kta_A Chromosome segregation 63.9 4.2 0.00014 34.9 3.1 23 160-184 28-50 (182)
352 2r2a_A Uncharacterized protein 63.7 4.6 0.00016 35.6 3.3 15 161-175 8-22 (199)
353 2i1q_A DNA repair and recombin 63.3 5.6 0.00019 38.0 4.1 26 151-176 86-116 (322)
354 2d7d_A Uvrabc system protein B 63.1 35 0.0012 36.2 10.6 77 194-281 445-525 (661)
355 2v3c_C SRP54, signal recogniti 63.0 5.7 0.0002 39.7 4.2 34 160-201 101-134 (432)
356 3nwj_A ATSK2; P loop, shikimat 62.9 4 0.00014 37.5 2.8 19 157-175 47-65 (250)
357 3fht_A ATP-dependent RNA helic 62.6 24 0.00083 34.4 8.9 71 194-275 266-340 (412)
358 3pey_A ATP-dependent RNA helic 62.5 25 0.00086 34.0 8.9 75 194-279 243-321 (395)
359 3auy_A DNA double-strand break 62.2 4.7 0.00016 39.5 3.4 21 161-183 28-48 (371)
360 1iy2_A ATP-dependent metallopr 62.1 3.4 0.00011 38.6 2.2 16 160-175 75-90 (278)
361 1s96_A Guanylate kinase, GMP k 62.0 3.8 0.00013 36.7 2.5 20 156-175 14-33 (219)
362 3eme_A Rhodanese-like domain p 61.9 6.3 0.00021 30.2 3.5 35 374-408 56-90 (103)
363 3qks_A DNA double-strand break 61.9 5.4 0.00019 35.2 3.5 24 160-185 25-48 (203)
364 3cm0_A Adenylate kinase; ATP-b 61.7 2.7 9.4E-05 36.2 1.4 18 158-175 4-21 (186)
365 2dhr_A FTSH; AAA+ protein, hex 61.5 10 0.00035 38.6 5.8 17 159-175 65-81 (499)
366 3gk5_A Uncharacterized rhodane 61.4 6 0.00021 30.7 3.3 36 374-409 55-90 (108)
367 3iwh_A Rhodanese-like domain p 61.3 6.7 0.00023 30.2 3.5 35 374-408 56-90 (103)
368 4h1g_A Maltose binding protein 61.3 5.1 0.00017 43.2 3.7 25 151-175 454-480 (715)
369 3foj_A Uncharacterized protein 61.2 6.1 0.00021 30.1 3.2 36 374-409 56-91 (100)
370 3b6e_A Interferon-induced heli 61.1 26 0.0009 30.4 8.0 55 374-432 82-140 (216)
371 2yhs_A FTSY, cell division pro 61.0 7.2 0.00025 39.6 4.5 33 160-200 295-327 (503)
372 3t61_A Gluconokinase; PSI-biol 60.6 3.8 0.00013 35.9 2.2 17 159-175 19-35 (202)
373 3bs4_A Uncharacterized protein 60.5 10 0.00035 34.9 5.1 51 158-217 21-71 (260)
374 2c95_A Adenylate kinase 1; tra 60.5 4.3 0.00015 35.2 2.5 19 157-175 8-26 (196)
375 3pxi_A Negative regulator of g 60.5 11 0.00039 40.7 6.4 16 160-175 523-538 (758)
376 1s2m_A Putative ATP-dependent 60.4 30 0.001 33.6 9.1 72 194-276 258-333 (400)
377 1in4_A RUVB, holliday junction 60.4 4 0.00014 39.3 2.5 17 159-175 52-68 (334)
378 3uie_A Adenylyl-sulfate kinase 60.3 3.6 0.00012 36.1 2.0 19 157-175 24-42 (200)
379 2chq_A Replication factor C sm 60.1 9.7 0.00033 35.9 5.2 16 160-175 40-55 (319)
380 3dmn_A Putative DNA helicase; 59.8 78 0.0027 26.6 10.8 82 349-452 43-124 (174)
381 2rhm_A Putative kinase; P-loop 59.6 4 0.00014 35.3 2.2 17 159-175 6-22 (193)
382 1zd8_A GTP:AMP phosphotransfer 59.4 4.2 0.00014 36.5 2.3 18 158-175 7-24 (227)
383 1via_A Shikimate kinase; struc 59.4 4.6 0.00016 34.4 2.5 16 160-175 6-21 (175)
384 1yks_A Genome polyprotein [con 59.4 10 0.00035 38.1 5.4 69 194-274 177-245 (440)
385 2bdt_A BH3686; alpha-beta prot 59.3 4.2 0.00014 35.2 2.2 16 160-175 4-19 (189)
386 2v6i_A RNA helicase; membrane, 59.2 12 0.0004 37.5 5.8 54 194-252 171-224 (431)
387 3k1j_A LON protease, ATP-depen 59.1 6.2 0.00021 41.5 3.9 22 154-175 56-77 (604)
388 1q57_A DNA primase/helicase; d 59.1 6.5 0.00022 40.3 4.0 52 157-216 241-292 (503)
389 1fuu_A Yeast initiation factor 59.1 22 0.00076 34.4 7.8 70 374-448 89-168 (394)
390 1hv8_A Putative ATP-dependent 59.0 34 0.0012 32.6 9.1 74 193-277 237-314 (367)
391 1m7g_A Adenylylsulfate kinase; 58.9 5.2 0.00018 35.4 2.8 30 145-175 13-42 (211)
392 1v5w_A DMC1, meiotic recombina 58.7 5.2 0.00018 38.7 2.9 52 151-204 110-166 (343)
393 3ice_A Transcription terminati 58.6 25 0.00084 34.5 7.5 28 148-175 161-191 (422)
394 1wv9_A Rhodanese homolog TT165 58.6 8.3 0.00028 28.9 3.5 35 375-409 54-88 (94)
395 1gvn_B Zeta; postsegregational 58.5 4 0.00014 38.3 2.1 16 160-175 35-50 (287)
396 3cmw_A Protein RECA, recombina 58.5 7.7 0.00026 45.7 4.7 45 158-210 1431-1475(1706)
397 3c8u_A Fructokinase; YP_612366 58.4 3.8 0.00013 36.2 1.8 19 157-175 21-39 (208)
398 2iyv_A Shikimate kinase, SK; t 58.3 5.3 0.00018 34.3 2.7 17 159-175 3-19 (184)
399 3lnc_A Guanylate kinase, GMP k 58.3 2.3 7.9E-05 38.4 0.3 20 156-175 25-44 (231)
400 2qt1_A Nicotinamide riboside k 58.3 2.4 8.2E-05 37.5 0.4 19 157-175 20-38 (207)
401 1tev_A UMP-CMP kinase; ploop, 58.0 4.5 0.00016 35.0 2.2 17 159-175 4-20 (196)
402 2bwj_A Adenylate kinase 5; pho 58.0 4.7 0.00016 35.1 2.3 19 157-175 11-29 (199)
403 3qf7_A RAD50; ABC-ATPase, ATPa 57.8 6.4 0.00022 38.4 3.5 23 160-184 25-47 (365)
404 1aky_A Adenylate kinase; ATP:A 57.7 4.9 0.00017 35.8 2.5 18 158-175 4-21 (220)
405 1zuh_A Shikimate kinase; alpha 57.7 4.7 0.00016 34.1 2.2 18 159-176 8-25 (168)
406 1ak2_A Adenylate kinase isoenz 57.5 4.9 0.00017 36.3 2.4 18 158-175 16-33 (233)
407 3pxi_A Negative regulator of g 57.4 11 0.00039 40.7 5.7 25 158-183 201-225 (758)
408 2j0s_A ATP-dependent RNA helic 57.3 34 0.0012 33.4 8.9 73 194-277 276-352 (410)
409 2v54_A DTMP kinase, thymidylat 57.0 5.2 0.00018 35.0 2.5 19 157-175 3-21 (204)
410 1e6c_A Shikimate kinase; phosp 56.9 5.4 0.00019 33.7 2.5 17 159-175 3-19 (173)
411 3m6a_A ATP-dependent protease 56.6 4.7 0.00016 41.8 2.4 19 157-175 107-125 (543)
412 1zak_A Adenylate kinase; ATP:A 56.6 5.6 0.00019 35.5 2.7 18 158-175 5-22 (222)
413 3fb4_A Adenylate kinase; psych 56.5 4.9 0.00017 35.6 2.2 16 160-175 2-17 (216)
414 3cmw_A Protein RECA, recombina 56.3 13 0.00046 43.7 6.2 40 157-204 33-72 (1706)
415 4akg_A Glutathione S-transfera 56.1 4.4 0.00015 50.1 2.3 20 156-175 1265-1284(2695)
416 3fmo_B ATP-dependent RNA helic 56.0 13 0.00044 35.0 5.2 68 374-448 162-241 (300)
417 2oca_A DAR protein, ATP-depend 55.7 84 0.0029 31.8 11.8 76 194-279 347-426 (510)
418 3dl0_A Adenylate kinase; phosp 55.3 5.3 0.00018 35.4 2.2 16 160-175 2-17 (216)
419 1qf9_A UMP/CMP kinase, protein 55.3 5.3 0.00018 34.5 2.2 16 160-175 8-23 (194)
420 3asz_A Uridine kinase; cytidin 55.3 4.8 0.00016 35.5 1.9 19 157-175 5-23 (211)
421 2v9p_A Replication protein E1; 55.3 6.4 0.00022 37.3 2.8 26 157-184 125-150 (305)
422 2i3b_A HCR-ntpase, human cance 55.2 10 0.00034 33.0 3.9 41 267-310 103-145 (189)
423 2cdn_A Adenylate kinase; phosp 55.0 5.9 0.0002 34.6 2.5 17 159-175 21-37 (201)
424 2pez_A Bifunctional 3'-phospho 54.9 5 0.00017 34.3 2.0 19 157-175 4-22 (179)
425 1j8m_F SRP54, signal recogniti 54.9 11 0.00039 35.4 4.6 16 160-175 100-115 (297)
426 3tif_A Uncharacterized ABC tra 54.4 5.2 0.00018 36.2 2.0 18 157-174 30-47 (235)
427 1rz3_A Hypothetical protein rb 54.4 13 0.00046 32.4 4.7 16 160-175 24-39 (201)
428 2z0m_A 337AA long hypothetical 54.3 25 0.00087 33.1 7.2 68 376-448 58-135 (337)
429 3tqf_A HPR(Ser) kinase; transf 54.2 8.9 0.0003 32.8 3.2 19 157-175 15-33 (181)
430 4a74_A DNA repair and recombin 54.0 5.5 0.00019 35.6 2.1 19 157-175 24-42 (231)
431 1ye8_A Protein THEP1, hypothet 53.8 6 0.00021 34.0 2.2 16 160-175 2-17 (178)
432 1cke_A CK, MSSA, protein (cyti 53.8 5.8 0.0002 35.4 2.2 17 159-175 6-22 (227)
433 3sr0_A Adenylate kinase; phosp 53.7 15 0.0005 32.5 4.8 16 161-176 3-18 (206)
434 3cmu_A Protein RECA, recombina 53.5 11 0.00037 45.2 4.9 48 155-211 1078-1125(2050)
435 2xau_A PRE-mRNA-splicing facto 53.5 27 0.00091 37.9 7.7 76 194-275 303-393 (773)
436 1ukz_A Uridylate kinase; trans 53.3 6 0.00021 34.6 2.2 16 160-175 17-32 (203)
437 2jaq_A Deoxyguanosine kinase; 53.2 6 0.00021 34.5 2.2 15 161-175 3-17 (205)
438 2wwf_A Thymidilate kinase, put 53.2 6.3 0.00022 34.7 2.4 19 157-175 9-27 (212)
439 2pt5_A Shikimate kinase, SK; a 53.0 6.2 0.00021 33.2 2.2 16 160-175 2-17 (168)
440 1qvr_A CLPB protein; coiled co 52.9 9 0.00031 42.2 4.0 16 160-175 590-605 (854)
441 2if2_A Dephospho-COA kinase; a 52.9 6.1 0.00021 34.6 2.2 16 160-175 3-18 (204)
442 1c4o_A DNA nucleotide excision 52.8 41 0.0014 35.6 9.0 76 194-280 439-518 (664)
443 3flh_A Uncharacterized protein 52.7 9.4 0.00032 30.4 3.1 36 374-409 71-108 (124)
444 2plr_A DTMP kinase, probable t 52.5 5.7 0.0002 34.9 2.0 18 158-175 4-21 (213)
445 1jjv_A Dephospho-COA kinase; P 52.3 6.4 0.00022 34.6 2.2 15 161-175 5-19 (206)
446 2cbz_A Multidrug resistance-as 52.2 6 0.0002 35.9 2.0 18 157-174 30-47 (237)
447 1nn5_A Similar to deoxythymidy 52.0 6.9 0.00024 34.5 2.4 19 157-175 8-26 (215)
448 3tlx_A Adenylate kinase 2; str 52.0 6.6 0.00023 35.7 2.3 18 158-175 29-46 (243)
449 4akg_A Glutathione S-transfera 51.8 12 0.0004 46.5 4.9 45 130-175 892-940 (2695)
450 2vli_A Antibiotic resistance p 51.6 5.4 0.00019 34.1 1.6 18 158-175 5-22 (183)
451 1htw_A HI0065; nucleotide-bind 51.5 10 0.00034 31.9 3.2 27 156-184 31-57 (158)
452 1sgw_A Putative ABC transporte 51.3 6.9 0.00024 34.9 2.3 18 157-174 34-51 (214)
453 3vkg_A Dynein heavy chain, cyt 51.3 24 0.00082 44.4 7.5 53 130-185 875-931 (3245)
454 3a4m_A L-seryl-tRNA(SEC) kinas 51.3 6.6 0.00023 36.1 2.2 17 159-175 5-21 (260)
455 3be4_A Adenylate kinase; malar 51.3 6.9 0.00024 34.8 2.3 18 158-175 5-22 (217)
456 3tbk_A RIG-I helicase domain; 51.2 14 0.00048 38.0 5.0 71 374-448 52-133 (555)
457 2vhj_A Ntpase P4, P4; non- hyd 51.2 7.7 0.00026 36.9 2.7 20 157-176 122-141 (331)
458 3zq6_A Putative arsenical pump 50.6 16 0.00056 34.8 5.0 33 161-201 17-49 (324)
459 2pbr_A DTMP kinase, thymidylat 50.3 7.2 0.00025 33.6 2.2 15 161-175 3-17 (195)
460 3hix_A ALR3790 protein; rhodan 50.3 12 0.0004 28.8 3.2 35 375-409 53-88 (106)
461 1byi_A Dethiobiotin synthase; 50.2 18 0.00063 31.9 5.1 33 162-202 6-38 (224)
462 1uf9_A TT1252 protein; P-loop, 50.1 7.1 0.00024 34.0 2.2 16 160-175 10-25 (203)
463 1e4v_A Adenylate kinase; trans 50.0 7.2 0.00024 34.5 2.2 16 160-175 2-17 (214)
464 1np6_A Molybdopterin-guanine d 50.0 20 0.00068 30.6 4.9 16 160-175 8-23 (174)
465 4e22_A Cytidylate kinase; P-lo 49.8 7.7 0.00026 35.5 2.4 19 157-175 26-44 (252)
466 3tqc_A Pantothenate kinase; bi 49.7 29 0.00099 33.0 6.5 23 161-185 95-117 (321)
467 1c9k_A COBU, adenosylcobinamid 49.7 9.7 0.00033 32.8 2.9 44 161-216 2-45 (180)
468 2ykg_A Probable ATP-dependent 49.7 43 0.0015 35.6 8.7 71 375-449 62-143 (696)
469 1qxn_A SUD, sulfide dehydrogen 49.5 15 0.00051 29.8 3.9 36 374-409 82-118 (137)
470 2ff7_A Alpha-hemolysin translo 49.2 7 0.00024 35.7 2.0 18 157-174 34-51 (247)
471 2ghi_A Transport protein; mult 49.0 7.1 0.00024 36.0 2.0 18 157-174 45-62 (260)
472 2bbw_A Adenylate kinase 4, AK4 49.0 7.6 0.00026 35.3 2.2 18 158-175 27-44 (246)
473 2f1r_A Molybdopterin-guanine d 49.0 6.5 0.00022 33.6 1.6 16 160-175 4-19 (171)
474 3umf_A Adenylate kinase; rossm 49.0 9.8 0.00033 33.9 2.9 19 158-176 29-47 (217)
475 3gfo_A Cobalt import ATP-bindi 49.0 6.8 0.00023 36.5 1.9 18 157-174 33-50 (275)
476 2fsx_A RV0390, COG0607: rhodan 48.9 19 0.00065 29.6 4.6 35 375-409 81-116 (148)
477 2pze_A Cystic fibrosis transme 48.8 7.1 0.00024 35.2 2.0 18 157-174 33-50 (229)
478 1lsh_B Lipovitellin (LV-2); vi 48.6 3.7 0.00013 39.0 0.0 12 3-14 2-13 (319)
479 3eiq_A Eukaryotic initiation f 48.6 42 0.0014 32.7 7.9 72 374-448 108-189 (414)
480 2r2a_A Uncharacterized protein 48.5 10 0.00036 33.2 3.0 41 270-310 88-133 (199)
481 2pcj_A ABC transporter, lipopr 48.2 7.2 0.00025 35.0 1.9 18 157-174 29-46 (224)
482 4a2q_A RIG-I, retinoic acid in 48.2 43 0.0015 36.4 8.4 71 374-448 296-377 (797)
483 2z0h_A DTMP kinase, thymidylat 48.0 8.2 0.00028 33.4 2.2 15 161-175 3-17 (197)
484 2xb4_A Adenylate kinase; ATP-b 48.0 8.1 0.00028 34.5 2.2 15 161-175 3-17 (223)
485 1r6b_X CLPA protein; AAA+, N-t 48.0 11 0.00037 41.0 3.6 16 160-175 490-505 (758)
486 3nh6_A ATP-binding cassette SU 47.8 7.1 0.00024 37.0 1.8 18 157-174 79-96 (306)
487 1ypw_A Transitional endoplasmi 47.7 3.8 0.00013 44.8 -0.1 19 157-175 510-528 (806)
488 2p5t_B PEZT; postsegregational 47.6 6 0.00021 36.2 1.3 17 159-175 33-49 (253)
489 4g1u_C Hemin import ATP-bindin 47.4 7.6 0.00026 35.9 2.0 18 157-174 36-53 (266)
490 3g5j_A Putative ATP/GTP bindin 47.4 13 0.00045 29.7 3.3 35 375-409 90-125 (134)
491 3nhv_A BH2092 protein; alpha-b 47.4 14 0.00049 30.3 3.5 36 374-409 72-109 (144)
492 3ug7_A Arsenical pump-driving 47.2 19 0.00065 34.7 4.9 33 161-201 29-61 (349)
493 1nij_A Hypothetical protein YJ 47.2 11 0.00037 35.9 3.1 14 161-174 7-20 (318)
494 1tf7_A KAIC; homohexamer, hexa 47.1 16 0.00056 37.5 4.7 40 157-204 280-319 (525)
495 4gl2_A Interferon-induced heli 47.0 5.8 0.0002 42.5 1.3 70 375-448 57-142 (699)
496 3bfv_A CAPA1, CAPB2, membrane 47.0 39 0.0013 31.1 6.9 32 161-200 85-117 (271)
497 4a2p_A RIG-I, retinoic acid in 47.0 38 0.0013 34.7 7.6 71 374-448 55-136 (556)
498 2woo_A ATPase GET3; tail-ancho 46.9 17 0.00058 34.7 4.5 33 161-201 22-54 (329)
499 1g6h_A High-affinity branched- 46.8 7.9 0.00027 35.6 2.0 18 157-174 32-49 (257)
500 2grj_A Dephospho-COA kinase; T 46.8 9 0.00031 33.4 2.2 15 161-175 15-29 (192)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.9e-61 Score=495.57 Aligned_cols=373 Identities=42% Similarity=0.681 Sum_probs=338.1
Q ss_pred CCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCC
Q 008430 114 VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 114 ~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 193 (565)
...|.++.+|+++++++.+++++...||.+|+|+|+++++.++.|++++++|+||+|||++|++|++..+..........
T Consensus 49 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 128 (434)
T 2db3_A 49 SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELG 128 (434)
T ss_dssp SSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999988764333345
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEE
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~i 273 (565)
++++|||+|+++|+.|++++++++.... ++.+..++||.....+...+..+++|+|+||++|.+++......+.++++|
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 7899999999999999999999998654 578889999999888888888899999999999999999888889999999
Q ss_pred EecchhHhhcCCCHHHHHHHHHhC--CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch
Q 008430 274 ILDEADRMLDMGFEPQIREVMQNL--PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE 351 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~--~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (565)
||||||++.+++|...+..++..+ ++..|++++|||++..+...+..++.++..+..........++.+.+..+....
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 287 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA 287 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGG
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHH
Confidence 999999999999999999999885 567899999999999999999999999988888777767778888888888888
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 008430 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
+...+.+.+.... .++||||++++.|+.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 288 k~~~l~~~l~~~~----------~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 288 KRSKLIEILSEQA----------DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp HHHHHHHHHHHCC----------TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred HHHHHHHHHHhCC----------CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 8888777765421 139999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEecc-ccHHHHHHHHHHHHhhh
Q 008430 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD-RDMLLVAQIKKAIVDAE 497 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~ 497 (565)
+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++ ++......+.+.+....
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~ 424 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSG 424 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTT
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999994 57778888888776543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-57 Score=469.13 Aligned_cols=375 Identities=45% Similarity=0.749 Sum_probs=329.0
Q ss_pred CCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCC----
Q 008430 114 VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---- 189 (565)
Q Consensus 114 ~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~---- 189 (565)
...|.++.+|+++++++.+.++|...|+.+|+++|+++++.++.|+++++++|||+|||++|++|++..+......
T Consensus 8 ~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 8 NNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp TTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 3568889999999999999999999999999999999999999999999999999999999999999887764311
Q ss_pred ---------CCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHH
Q 008430 190 ---------GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 260 (565)
Q Consensus 190 ---------~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l 260 (565)
.+..++++||++|+++|+.|+++.++++.... ++.+..++|+.....+...+..+++|+|+||++|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 88 AMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 166 (417)
T ss_dssp HHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHH
T ss_pred ccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHH
Confidence 11234789999999999999999999988654 68899999999988888788888999999999999999
Q ss_pred HcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC--CC--CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCC
Q 008430 261 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP 336 (565)
Q Consensus 261 ~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (565)
....+.+.++++|||||||++.+.+|...+..++... ++ ..|++++|||++..+......++.++..+........
T Consensus 167 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2i4i_A 167 ERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST 246 (417)
T ss_dssp HTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----C
T ss_pred HcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 9888888999999999999999999999999998743 32 5789999999999999999999998888877766666
Q ss_pred CCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHH
Q 008430 337 TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESA 416 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 416 (565)
...+.+.+..+....+...+.+.+... ....++||||+++++++.+++.|.+.++.+..+||++++++|..+
T Consensus 247 ~~~i~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 247 SENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp CSSEEEEEEECCGGGHHHHHHHHHHTC--------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred ccCceEEEEEeccHhHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 677777788887777777666655431 234579999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 417 LRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++++.+...+..+.+.+...
T Consensus 319 ~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 398 (417)
T 2i4i_A 319 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 398 (417)
T ss_dssp HHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred HHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887654
Q ss_pred h
Q 008430 497 E 497 (565)
Q Consensus 497 ~ 497 (565)
.
T Consensus 399 ~ 399 (417)
T 2i4i_A 399 K 399 (417)
T ss_dssp T
T ss_pred c
Confidence 3
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-56 Score=462.08 Aligned_cols=365 Identities=34% Similarity=0.569 Sum_probs=324.3
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
+.+..+|+++++++.+.+++...|+.+|+++|+++++.+++|+++++++|||+|||++|++|++..+... ..+++
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~ 107 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQ 107 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCC
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCce
Confidence 3456789999999999999999999999999999999999999999999999999999999988765321 24678
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
+||++|+++|+.|+.+.++++.... ++.+..+.|+.....+...+..+++|+|+||++|.+.+......+..+++||||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 9999999999999999999987654 688889999999888877777889999999999999999888888899999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch-HHHH
Q 008430 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDR 355 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~ 355 (565)
|||++.+.++...+..++..+++..|++++|||++..+......++.++..+...........+.+.+..+.... +...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 999999999999999999999889999999999999888888888888888776665556667777777666544 5555
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCccc
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
+...+... ..+++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 267 l~~~~~~~---------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 267 LCDLYDTL---------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp HHHHHHHH---------TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred HHHHHHhc---------CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 55544332 123699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHhh
Q 008430 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
+|+|+|++++||++|+|++...|+||+||+||.|+.|.+++++++.+...++.+++.+...
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 398 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999888776543
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.4e-54 Score=446.00 Aligned_cols=360 Identities=33% Similarity=0.550 Sum_probs=317.0
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 198 (565)
...+|+++++++.++++|...|+.+|+++|+++++.++.|+++++++|||+|||++|+++++..+... ..+.++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 93 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQAL 93 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccEE
Confidence 45689999999999999999999999999999999999999999999999999999999988775432 2366899
Q ss_pred EEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecch
Q 008430 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 278 (565)
|++|+++|+.|+.+.+++++... ++.+..+.|+.........+..+++|+|+||++|.+.+......+.++++||||||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999998764 67888899998887777777788999999999999998887778889999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
|++.+.++...+..++..+++..|++++|||++..+...+..++..+..+..... .....+.+.+.......+...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHH
Confidence 9998877888889999888888999999999999999999999888876654432 334456666666776667666555
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCC
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+.. ...+++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 252 ~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 252 LFSK---------LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp HHHH---------SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred HHhh---------cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 5433 1344799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
|+|++++||++++|.+...|+||+||+||.|+.|.+++++++.|...++++++.+.
T Consensus 323 dip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 323 DIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998888877664
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5e-55 Score=451.53 Aligned_cols=364 Identities=35% Similarity=0.575 Sum_probs=306.8
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
+....+|+++++++.+++.+...|+..|+++|+++++.++.|+++++++|||+|||++|+++++..+... ..+.+
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 110 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKATQ 110 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSCC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCcee
Confidence 4566789999999999999999999999999999999999999999999999999999999998875432 24678
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcCCCCCCCceEEEe
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIi 275 (565)
+||++|+++|+.|+.+.+++++... +..+..+.|+.........+. .+++|+|+||++|.+.+....+.+.++++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 9999999999999999999988764 678888888888776665555 67999999999999999988888889999999
Q ss_pred cchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch-HHH
Q 008430 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 354 (565)
||||++.+.++...+..++..+++..|++++|||++.........++.++..+...........+.+.+....... +..
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9999999999999999999999999999999999999999999999998888777666656666666666665444 554
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+.. ...+++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 270 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 270 TLCDLYET---------LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp HHHHHHHS---------SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHHHHh---------CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 44444322 233469999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++++.+...++.+++.+..
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTC
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999988888777643
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.5e-54 Score=439.27 Aligned_cols=359 Identities=31% Similarity=0.543 Sum_probs=312.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.+|+++++++.+.++|...|+.+|+++|.++++.++.|+++++.+|||+|||++|+++++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999988765332 236689999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
+|+++|+.|+.+.++++....+++.+..+.|+.........+. +.++|+|+||++|...+......+.++++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 9999999999999999987666788999999988776655554 458999999999999988887888999999999999
Q ss_pred HhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcC-CCCCceEEEEEEeccchHHHHHH
Q 008430 280 RMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 280 ~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~ 357 (565)
++.+. ++...+..++...++..|++++|||++......+..++..+..+...... .....+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67778888888888889999999999999999999999988877665433 23345666667777777777666
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCC
Q 008430 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..+... ..+++||||+++++++.+++.|.+.++.+..+||+++.++|..+++.|++|+.+|||||+++++|
T Consensus 243 ~~l~~~---------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 313 (391)
T 1xti_A 243 DLLDVL---------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313 (391)
T ss_dssp HHHHHS---------CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSC
T ss_pred HHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcC
Confidence 665431 34579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc-cHHHHHHHHHHH
Q 008430 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAI 493 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~ 493 (565)
+|+|++++||++++|++...|+||+||+||.|+.|.+++++++. +...++.+++.+
T Consensus 314 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp BCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876 445566666554
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-53 Score=431.83 Aligned_cols=354 Identities=39% Similarity=0.611 Sum_probs=312.2
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 198 (565)
..+|+++++++.+.+.|...|+.+|+++|+++++.++++ +++++.+|||+|||++|+++++..+... .+.++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 357999999999999999999999999999999999988 6899999999999999998888765332 467899
Q ss_pred EEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecch
Q 008430 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~ 278 (565)
|++|+++|+.|+.+.++++++.. ++.+..+.|+.........+. +++|+|+||++|.+.+......+.++++||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 99999999999999999998754 578888899888766655554 6899999999999999888888899999999999
Q ss_pred hHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHH
Q 008430 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
|++.+.++...+..++..+++..+++++|||++.........++.++..+.... ..++.+.+.......+...+..
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHH
Confidence 999999999999999999988899999999999998888888888765554332 2355566666677777766666
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCC
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+. ....++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 233 ~l~----------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 233 LLK----------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp HHC----------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHh----------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 553 2334699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
|+|++++||++++|+++..|+||+||+||.|++|.+++++++.+...+..+++.+..
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998877644
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.7e-53 Score=437.21 Aligned_cols=361 Identities=30% Similarity=0.481 Sum_probs=309.2
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 194 (565)
...+.+|+++++++.+++.|...|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 456789999999999999999999999999999999999987 8999999999999999999998876442 246
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-CCCCCCCceEE
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFV 273 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-~~~~~~~~~~i 273 (565)
+++||++|+++|+.|+.+.++++.....+..+....++...... ....++|+|+||++|.+.+.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 68999999999999999999999876667788888877653321 234579999999999998865 45677899999
Q ss_pred EecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccc-h
Q 008430 274 ILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-E 351 (565)
Q Consensus 274 IiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 351 (565)
||||||++.+ .++...+..++..++...|++++|||++.........++.++..+...........+.+.+...... .
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 6788889999999998999999999999999999999999988887776666666677666665543 3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 008430 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
+...+...+... ..+++||||+++.+|+.+++.|.+.++.+..+||++++.+|..+++.|++|+++|||||
T Consensus 253 ~~~~l~~~~~~~---------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 253 KFQALCNLYGAI---------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp HHHHHHHHHHHH---------SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHhhc---------CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 444444444321 23469999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCccCccEEEEcCCCC------CcccceecccccccCCCceeEEEEecccc-HHHHHHHHHHHH
Q 008430 432 DVASRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAIV 494 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~~~ 494 (565)
+++++|+|+|++++||++++|. +...|+||+||+||.|+.|.++++++..+ ...++.+++.+.
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 9999999999999999999995 56799999999999999999999998764 677777766654
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.1e-53 Score=433.04 Aligned_cols=357 Identities=31% Similarity=0.518 Sum_probs=303.0
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
...+|+++++++.+++.+...|+.+|+++|.++++.++.+ +++++++|||+|||++|+++++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999988 8999999999999999999988775432 24678
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
+||++|+++|+.|+++.++++.... ++.+....++..... ...+++|+|+||++|.+.+......+.++++||||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 9999999999999999999987654 567777776643221 23468999999999999998888888999999999
Q ss_pred chhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch-HHH
Q 008430 277 EADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (565)
Q Consensus 277 E~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 354 (565)
|||++.+ .++...+..+...+++..|++++|||++..+......++..+..+...........+.+.+....... +..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999987 67888889999999989999999999999999999999988888777666666666666666654433 332
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+. ....+++||||+++++|+.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 233 ~l~~~~~---------~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 233 VLTELYG---------LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp HHHHHHT---------TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred HHHHHHH---------hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 2222221 1234579999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCccEEEEcCCCC------CcccceecccccccCCCceeEEEEeccc-cHHHHHHHHHHHH
Q 008430 435 SRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 494 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~ 494 (565)
++|+|+|++++||++++|. ++..|+||+||+||.|+.|.+++++... +......+.+.+.
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999998 9999999999999999999999999875 4455556655544
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-54 Score=445.84 Aligned_cols=363 Identities=34% Similarity=0.561 Sum_probs=186.5
Q ss_pred CCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q 008430 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 116 ~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 195 (565)
...+...|+++++++.+.+.+...|+.+|+++|+++++.++.|+++++++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 34556789999999999999999999999999999999999999999999999999999999998875432 2467
Q ss_pred eEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEe
Q 008430 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 196 ~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIi 275 (565)
++||++|+++|+.|+.+.+++++... ++.+..+.|+.........+. +++|+|+||++|.+.+......+.++++||+
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 89999999999999999999988654 578889999988766555443 6899999999999999888788889999999
Q ss_pred cchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccch-HHH
Q 008430 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 354 (565)
||||++.+.++...+..++..+++..|++++|||++.........++..+..+...........+.+.+..+.... +..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 9999999999999999999999999999999999999988888899998888776654444444444443333322 333
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcc
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+.. ...+++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++
T Consensus 249 ~l~~~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 249 CLTDLYDS---------ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhc---------CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 33333221 123369999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
++|+|+|++++||++++|.++..|+||+||+||.|++|.+++++++.+...+..+++.+.
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999888887766543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-52 Score=451.18 Aligned_cols=369 Identities=29% Similarity=0.452 Sum_probs=303.2
Q ss_pred cCCcccCC----CCHHHHHHHHHCCCCCCCHHHHHHHHhHh--CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCC
Q 008430 120 IESFTDMC----LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 120 ~~~f~~~~----l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~--~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 193 (565)
..+|+++. +++.+++++...|+..|+|+|.++++.++ .++++++.||||+|||++|++|++..+..... ....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccC
Confidence 34455543 99999999999999999999999999999 67899999999999999999999998876532 1224
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhc---CCCceEEEEECCCCHHHHHHHH-hCCCcEEEEccHHHHHHHHcC-CCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLS 268 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~-~~~~~ilv~T~~~l~~~l~~~-~~~~~ 268 (565)
++++|||+|+++|+.|+.+.+++++.. .....+..+.|+.........+ ..+++|+|+||++|.+.+... ...+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 678999999999999999999998742 2356788888888877665555 347999999999999887654 34577
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCC-------CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcC----CCC
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLP-------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS----SPT 337 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 337 (565)
.+++|||||||++.+++|...+..++..++ +..|+++||||++..+...+..++..+..+...... ...
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 899999999999999999999888876653 367899999999999988888888887766553321 222
Q ss_pred CceEEEEEEecc-chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc---CCceeEecCCCCHHHH
Q 008430 338 ANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDR 413 (565)
Q Consensus 338 ~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r 413 (565)
..+.+....... ..+...++..+...... ..+..++||||+++.+|+.+++.|.+. ++.+..+||++++.+|
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKE----RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHH----TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhh----cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 344444444433 23333444444333221 133457999999999999999999987 8999999999999999
Q ss_pred HHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008430 414 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 414 ~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 493 (565)
..+++.|++|+++|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.+...++.+++..
T Consensus 331 ~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 331 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887764
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.4e-52 Score=445.41 Aligned_cols=361 Identities=30% Similarity=0.460 Sum_probs=298.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHh--CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~--~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
+++.+++++...|+.+|+|+|.++++.++ .++++|++||||+|||++|++|++..+...... ...++++|||+|+++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 668999999999999999999999988775321 223568999999999
Q ss_pred hHHHHHHHHHHHhhc---CCCceEEEEECCCCHHHHHHHH-hCCCcEEEEccHHHHHHHHcC-CCCCCCceEEEecchhH
Q 008430 206 LAQQIEKEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADR 280 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~-~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~iIiDE~H~ 280 (565)
|+.|+++.+++++.. .....+..++|+.........+ ..+++|+|+||++|.+.+... ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 2346678888888876665554 457999999999999887654 23567899999999999
Q ss_pred hhcCCCHHHHHHHHHhC-------CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcC----CCCCceEEEEEEecc
Q 008430 281 MLDMGFEPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS----SPTANVIQILEKVSE 349 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 349 (565)
+.+++|...+..++..+ .+..|++++|||++..+...+..++..+..+...... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999988887665 2367899999999999888888888877666543222 222334444444332
Q ss_pred -chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc---CCceeEecCCCCHHHHHHHHHHhhcCCc
Q 008430 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 350 -~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
..+...++..+...... ..+..++||||+++..|+.+++.|.+. ++.+..+||++++.+|..+++.|++|++
T Consensus 318 ~~~~~~~~~~~l~~~~~~----~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 393 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKE----RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 393 (563)
T ss_dssp TTHHHHHHHHHHHHHHHH----TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred hHhhHHHHHHHHHHHHhh----cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC
Confidence 23333344433333221 133457999999999999999999987 8999999999999999999999999999
Q ss_pred eEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008430 426 NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 493 (565)
+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.+...++.+++..
T Consensus 394 ~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 394 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988887664
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-53 Score=448.54 Aligned_cols=359 Identities=30% Similarity=0.490 Sum_probs=177.6
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 195 (565)
.+..+|.++++++.+++.|...||..|+++|.++++.++.+ +++|++||||+|||++|++|++..+... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 45678999999999999999999999999999999999987 8999999999999999999988765432 2356
Q ss_pred eEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-CCCCCCCceEEE
Q 008430 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVI 274 (565)
Q Consensus 196 ~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-~~~~~~~~~~iI 274 (565)
++|||+|+++|+.|+++.++++......+.+....++...... ....++|+|+||++|.+++.. ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 8999999999999999999999876667778877777543221 134578999999999998865 456778999999
Q ss_pred ecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEecc-chH
Q 008430 275 LDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEK 352 (565)
Q Consensus 275 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k 352 (565)
|||+|++.+ .++...+..++..++...|++++|||++.........++.++..+...........+.+.+..+.. ..+
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH
Confidence 999999987 578888889999999899999999999999999999999988888776655444555555444433 233
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
...+...+... ..+++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+
T Consensus 321 ~~~l~~~~~~~---------~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 321 FQALCNLYGAI---------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhc---------cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 33333333221 223699999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccCccEEEEcCCCC------CcccceecccccccCCCceeEEEEecccc-HHHHHHHHHHH
Q 008430 433 VASRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAI 493 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~~ 493 (565)
++++|+|+|++++||++|+|. +...|+||+||+||.|+.|.++++++..+ ...++.+++.+
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHh
Confidence 999999999999999999994 66899999999999999999999998764 66666665544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-51 Score=409.24 Aligned_cols=335 Identities=36% Similarity=0.563 Sum_probs=285.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
+++.+.+++...|+.+|+++|+++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 4688999999999999999999999999999999999999999999998888764 56799999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCH
Q 008430 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 287 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~ 287 (565)
.|+.+.++++.... +..+..+.|+.........+. +++|+|+||++|.+.+......+.++++||+||||++.++++.
T Consensus 70 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 70 RQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 99999999987654 578888899888776655554 4999999999999998887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhh
Q 008430 288 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 288 ~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (565)
..+..++..++...+++++|||++......+..++.++..+... ....++...+.......+. .+..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~------ 216 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALR------ 216 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHH------
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHH------
Confidence 99999999999889999999999999998999988877665432 2233444444444433321 122211
Q ss_pred hhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEE
Q 008430 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 447 (565)
Q Consensus 368 ~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi 447 (565)
.....++||||+++++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 217 ---~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 217 ---ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp ---TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE
T ss_pred ---hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE
Confidence 1344579999999999999999886 678999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 448 NLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 448 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
++++|+++..|+||+||+||.|++|.+++++. .+...++.+++.+.
T Consensus 290 ~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 290 NFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp ESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred EecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 88888888766653
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-52 Score=439.69 Aligned_cols=383 Identities=27% Similarity=0.431 Sum_probs=250.6
Q ss_pred cCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC--CCEEEEcc
Q 008430 89 LRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAE 166 (565)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g--~~~li~a~ 166 (565)
...+++..+++...++.... ...+.|..+..|...++++.+.+.+...|+..|+++|.++++.++++ +++++++|
T Consensus 90 p~~~~~~~~~~~~~~~~~~~---~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~ap 166 (508)
T 3fho_A 90 XXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQ 166 (508)
T ss_dssp ----------------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECC
T ss_pred cccccccccccccccccccc---cccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECC
Confidence 34444555555544443332 12233555666777789999999999999999999999999999998 89999999
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCC
Q 008430 167 TGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGV 246 (565)
Q Consensus 167 TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 246 (565)
||+|||++|+++++..+... ..++++||++|+++|+.|+.+.+++++... ........++.... ....++
T Consensus 167 TGsGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~ 236 (508)
T 3fho_A 167 SGTGKTAAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPK----GAKIDA 236 (508)
T ss_dssp SSTTSHHHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC--------------CCCC
T ss_pred CCccHHHHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccc----cccCCC
Confidence 99999999999988876442 236689999999999999999999987654 34444444443221 223468
Q ss_pred cEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCC
Q 008430 247 SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDP 325 (565)
Q Consensus 247 ~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 325 (565)
+|+|+||++|.+.+....+.+.++++|||||||++.+ .++...+..++..+++..|++++|||++..+......++.++
T Consensus 237 ~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 316 (508)
T 3fho_A 237 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA 316 (508)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTC
T ss_pred CEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCC
Confidence 9999999999999988888889999999999999987 578899999999999999999999999999999999999888
Q ss_pred eEEEeCCcCCCCCceEEEEEEecc-chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEe
Q 008430 326 VQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVAL 404 (565)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~ 404 (565)
..+...........+...+..... ..+...+...+.. ...+++||||+++++|+.+++.|.+.++.+..+
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~ 387 (508)
T 3fho_A 317 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL---------LTIGQSIIFCKKKDTAEEIARRMTADGHTVACL 387 (508)
T ss_dssp EEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC------------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEE
T ss_pred eEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh---------cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 777665544444444444544433 3333333333322 123469999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCC------CCcccceecccccccCCCceeEEEEe
Q 008430 405 HGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~ 478 (565)
||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .++..|+||+||+||.|+.|.+++++
T Consensus 388 hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 388 TGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp C-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999 78999999999999999999999999
Q ss_pred cc-ccHHHHHHHHHHH
Q 008430 479 TD-RDMLLVAQIKKAI 493 (565)
Q Consensus 479 ~~-~~~~~~~~l~~~~ 493 (565)
.+ .+...+..+++.+
T Consensus 468 ~~~~~~~~~~~i~~~~ 483 (508)
T 3fho_A 468 HDKKSWEEMNAIQEYF 483 (508)
T ss_dssp CTTTSSSSHHHHHHHS
T ss_pred eChHHHHHHHHHHHHH
Confidence 85 4555566665554
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.5e-50 Score=424.40 Aligned_cols=341 Identities=17% Similarity=0.282 Sum_probs=272.5
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 123 FTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 123 f~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
+.++++++.+.+.|+. +|+..|+|+|.++++.++.|+++++++|||+|||++|++|++.. ++++|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVis 91 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVIC 91 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEe
Confidence 3457888999999987 69999999999999999999999999999999999999998752 45799999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH------HhCCCcEEEEccHHHH------HHHHcCCCCCCC
Q 008430 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE------LRGGVSIVVATPGRFL------DHLQQGNTSLSR 269 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~ilv~T~~~l~------~~l~~~~~~~~~ 269 (565)
|+++|+.|+.+.++++ ++.+..+.|+....+.... ..+.++|+|+||++|. +.+.. ...+.+
T Consensus 92 P~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp SCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 9999999999999986 5678888888876654332 2467999999999874 22221 234568
Q ss_pred ceEEEecchhHhhcCC--CHHHHHH--HHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEE
Q 008430 270 VSFVILDEADRMLDMG--FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE 345 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (565)
+++|||||||++.+++ |...+.. ++....+..+++++|||++..+...+..++..+....+.. .....++...+.
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~ 244 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVR 244 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEE
Confidence 9999999999999877 6665544 3333344688999999999998888877776543332222 122334433333
Q ss_pred Eecc--chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcC
Q 008430 346 KVSE--NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG 423 (565)
Q Consensus 346 ~~~~--~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 423 (565)
.... ..+...+.+.+.. ..++.++||||++++.++.+++.|...|+.+..+||+|++++|..+++.|++|
T Consensus 245 ~~~~~~~~~~~~l~~~l~~--------~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g 316 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLING--------RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN 316 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTT--------TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred eCCCcHHHHHHHHHHHHHH--------hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 2221 1222333333221 12345799999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 424 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 424 ~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
+++|||||+++++|||+|+|++||++++|.|+..|+|++||+||.|++|.+++++...|......+
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887665544
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.2e-49 Score=416.14 Aligned_cols=339 Identities=22% Similarity=0.342 Sum_probs=273.3
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 121 ESFTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
.+|+++++++.+.+.|+. +|+..|+++|.++++.+++|+++++++|||+|||++|++|++.. ++++||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999987 89999999999999999999999999999999999999998743 457999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH----HHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEe
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR----SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIi 275 (565)
|+|+++|+.|+.+.++.+ ++.+..+.++....+.. ....+.++|+|+||++|........+...++++|||
T Consensus 71 i~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred ECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 999999999999999875 56778888877655433 223467999999999995322111233467999999
Q ss_pred cchhHhhcCC--CHHHHHH---HHHhCCCCCcEEEEEeecChHHHHHHHHHc--CCCeEEEeCCcCCCCCceEEEEEEec
Q 008430 276 DEADRMLDMG--FEPQIRE---VMQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVS 348 (565)
Q Consensus 276 DE~H~~~~~~--~~~~~~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (565)
||||++.+++ |...+.. +...++ ..+++++|||++......+...+ .++..+ .... ...++...+ ..
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~~l~~~v--~~ 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIRYML--ME 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC--CCTTEEEEE--EE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC--CCCceEEEE--Ee
Confidence 9999999876 6555544 445554 57899999999988766555544 334333 2222 223343222 23
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEE
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
...+...+.+.+... ++.++||||++++.++.+++.|...|+.+..+||++++++|..+++.|++|+++||
T Consensus 220 ~~~~~~~l~~~l~~~---------~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ---------RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp CSSHHHHHHHHHHHT---------TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 344555565555431 33469999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHH
Q 008430 429 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 490 (565)
|||+++++|||+|++++||++++|.|...|+||+||+||.|++|.+++++++.|....+.+.
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877665543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=8.6e-48 Score=396.92 Aligned_cols=325 Identities=20% Similarity=0.257 Sum_probs=256.8
Q ss_pred HHHHHHH-CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 132 IMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 132 i~~~l~~-~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
+.+.+++ .++ +|+++|.++++.+++|+++++++|||+|||++|+++++... . .++++|||+|+++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~-------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R-------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-T-------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-c-------CCCEEEEEECCHHHHHHH
Confidence 3344444 355 89999999999999999999999999999999988877654 2 377899999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEECCCCH---HHHHHHHhC-CCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc---
Q 008430 211 EKEVKALSRSLDSFKTAIVVGGTNI---AEQRSELRG-GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--- 283 (565)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~--- 283 (565)
++.+++++. .++.+..++|+... ......+.. .++|+|+||++|.+.+.. +.+.++++|||||||++.+
T Consensus 81 ~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 81 LERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 999999876 37899999999987 334444444 499999999999877764 5667899999999997754
Q ss_pred --------CCCHHH-HHHHHHhCC-----------CCCcEEEEEee-cChHHH-HHHHHHcCCCeEEEeCCcCCCCCceE
Q 008430 284 --------MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQEYLTDPVQVKVGKVSSPTANVI 341 (565)
Q Consensus 284 --------~~~~~~-~~~i~~~~~-----------~~~~~l~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (565)
.+|... +..++..++ +..|++++||| ++..+. .....++. +..........++.
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~ 232 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNIT 232 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccch
Confidence 566666 777877765 77899999999 554433 23333332 12222233344555
Q ss_pred EEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCcee-EecCCCCHHHHHHHHHHh
Q 008430 342 QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDF 420 (565)
Q Consensus 342 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f 420 (565)
+.+... .+...+...+... +.++||||+++.+|+.+++.|...|+.+. .+||. +|+ ++.|
T Consensus 233 ~~~~~~---~~~~~l~~~l~~~----------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 233 HVRISS---RSKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp EEEESS---CCHHHHHHHHHHH----------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred heeecc---CHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 555444 3444555555441 13599999999999999999999999998 89984 444 9999
Q ss_pred hcCCceEEEE----cCcccCCCCccC-ccEEEEcCCC--CCcccceecccccccCC----CceeEEEEeccccHHHHHHH
Q 008430 421 RNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLP--KTVEDYVHRIGRTGRGG----SMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 421 ~~g~~~vLv~----T~~~~~Gidip~-v~~Vi~~~~~--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~l 489 (565)
++|+++|||| |+++++|+|+|+ |++||++|+| .++..|+||+||+||.| ..|.+++++ .|...+..+
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999987 479999999 677778888
Q ss_pred HHHHH
Q 008430 490 KKAIV 494 (565)
Q Consensus 490 ~~~~~ 494 (565)
++.+.
T Consensus 372 ~~~~~ 376 (414)
T 3oiy_A 372 KTRLL 376 (414)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88776
No 19
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.5e-44 Score=383.17 Aligned_cols=337 Identities=21% Similarity=0.258 Sum_probs=227.3
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.|+++++++|||+|||++|++|++..+.... ...++++|||+|+++|+.|+.+.+++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999988877642 1236789999999999999999999998765
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-CCCCceEEEecchhHhhcCC-CHHHHHHHHHhC--
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIREVMQNL-- 297 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~-~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~-- 297 (565)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+ +...+...+...
T Consensus 80 -~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 -GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp -TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred -CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 6889999999866555445556799999999999999988766 78889999999999998765 222222333221
Q ss_pred ---CCCCcEEEEEeecChHH--------HH--HHHHHcCCCeEEEeCC------cCCCCCceEEEEEEe-----------
Q 008430 298 ---PDKHQTLLFSATMPVEI--------EA--LAQEYLTDPVQVKVGK------VSSPTANVIQILEKV----------- 347 (565)
Q Consensus 298 ---~~~~~~l~~SAT~~~~~--------~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------- 347 (565)
.+..+++++||||.... .. .+...+.......... ...............
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 24578999999995421 11 1112222111111000 000001111100000
Q ss_pred --------------------------------------------------------------------------------
Q 008430 348 -------------------------------------------------------------------------------- 347 (565)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (565)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -------------------------------------------------ccchHHHHHHHHHHHHHHhhhhcCCCCCeEE
Q 008430 348 -------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTI 378 (565)
Q Consensus 348 -------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~l 378 (565)
....|...+.+.+..... ..+..++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-----~~~~~k~l 393 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH-----LKPETKTI 393 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH-----HCTTCCEE
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc-----cCCCceEE
Confidence 001122222222222111 12345799
Q ss_pred EEecccchHHHHHHHHHHcC----C--------ceeEecCCCCHHHHHHHHHHhhc-CCceEEEEcCcccCCCCccCccE
Q 008430 379 VFVERKTRCDEVSEALVAEG----L--------HAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGVAH 445 (565)
Q Consensus 379 iF~~s~~~a~~l~~~l~~~~----~--------~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v~~ 445 (565)
|||+++.+++.+++.|...+ + ....+||+|++++|.+++++|++ |+++|||||+++++|||+|++++
T Consensus 394 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~ 473 (555)
T 3tbk_A 394 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNL 473 (555)
T ss_dssp EECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSE
T ss_pred EEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCE
Confidence 99999999999999999874 2 34455669999999999999999 99999999999999999999999
Q ss_pred EEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 446 VVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 446 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
||+||+|+|+..|+||+|| ||. +.|.+++++.+.+......+
T Consensus 474 VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 474 VILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999 898 88999999998866554443
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-45 Score=415.48 Aligned_cols=341 Identities=19% Similarity=0.213 Sum_probs=263.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
...|..+++++.+...+......+|+++|.++++.+..|+++|++||||+|||++|+++++..+. .++++||
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlv 232 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIY 232 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEE
Confidence 34566677777666666666777899999999999999999999999999999999999988764 3778999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
++|+++|+.|+++.++++++ .+++++|+.. ...+++|+|+||++|.+++......+.++++|||||||
T Consensus 233 l~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG
T ss_pred EcCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh
Confidence 99999999999999999874 5777888864 44679999999999999998887778899999999999
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChH--HHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEE---------ec
Q 008430 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE--IEALAQEYLTDPVQVKVGKVSSPTANVIQILEK---------VS 348 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 348 (565)
++.+.++...+..++..+++..|+|+||||++.. +..++......+..+........ .+...+.. +.
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeec
Confidence 9998888999999999999999999999998764 44566666666555544322211 11111110 00
Q ss_pred cch-----H--------------------------------------HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccc
Q 008430 349 ENE-----K--------------------------------------VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT 385 (565)
Q Consensus 349 ~~~-----k--------------------------------------~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~ 385 (565)
... . ...+...+..... ....++||||+++.
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~------~~~~~vIVF~~sr~ 452 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK------KKYNPVIVFSFSKR 452 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH------TTCCCEEEEESCHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh------cCCCCEEEEeCcHH
Confidence 000 0 1111111111111 23447999999999
Q ss_pred hHHHHHHHHHHcCCc---------------------------------------eeEecCCCCHHHHHHHHHHhhcCCce
Q 008430 386 RCDEVSEALVAEGLH---------------------------------------AVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 386 ~a~~l~~~l~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
.|+.++..|...++. +..+||+|++.+|..+++.|++|+++
T Consensus 453 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik 532 (1108)
T 3l9o_A 453 DCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 532 (1108)
T ss_dssp HHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe
Confidence 999999998654332 78899999999999999999999999
Q ss_pred EEEEcCcccCCCCccCccEEEEcCCCC--------CcccceecccccccCC--CceeEEEEeccc-cHHHHHH
Q 008430 427 ILVATDVASRGLDVMGVAHVVNLDLPK--------TVEDYVHRIGRTGRGG--SMGQATSFYTDR-DMLLVAQ 488 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~~~--------s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~-~~~~~~~ 488 (565)
|||||+++++|||+|++++||+++.+. |+..|+||+|||||.| ..|.|++++.+. +...+..
T Consensus 533 VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~ 605 (1108)
T 3l9o_A 533 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 605 (1108)
T ss_dssp EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHH
T ss_pred EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHH
Confidence 999999999999999999999877654 4556999999999999 679999988775 3333333
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-44 Score=396.77 Aligned_cols=337 Identities=19% Similarity=0.267 Sum_probs=260.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHh-HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~-l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
.+|+++++++.+.+.+...|+..|+++|.++++. +..+++++++||||+|||+++.++++..+... +++++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEE
Confidence 5699999999999999999999999999999999 77889999999999999999999999877642 678999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
++|+++|+.|+++.++.+.. . ++.++.++|+...... ...+++|+|+||++|...+......+.++++|||||+|
T Consensus 81 i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999964433 2 6788888887654332 12368999999999999888876668899999999999
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEE------------EEEEe
Q 008430 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ------------ILEKV 347 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 347 (565)
++.+..++..+..++..++ ..|+|+||||+++. . .+..++..+. +.... .+. .+.. .....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~-~~~~~l~~~~-~~~~~--r~~-~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNY-K-QIAKWLGAEP-VATNW--RPV-PLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-H-HHHHHHTCEE-EECCC--CSS-CEEEEEEEECSSTTEEEEEET
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-H-HHHHHhCCCc-cCCCC--CCC-CceEEEEecCCcccceeeecC
Confidence 9988788888888887776 78899999999752 2 3344544322 11110 000 1110 01111
Q ss_pred ccc----hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcC-------------------------
Q 008430 348 SEN----EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------- 398 (565)
Q Consensus 348 ~~~----~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~------------------------- 398 (565)
... .........+.+.. .+++++||||+++++++.+++.|.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSL-------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHH-------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred cchhhhcccchHHHHHHHHHH-------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 100 00012222222221 123569999999999999999998642
Q ss_pred -----------CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cC-------CCCCcc
Q 008430 399 -----------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-------LPKTVE 456 (565)
Q Consensus 399 -----------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~-------~~~s~~ 456 (565)
..+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24889999999999999999999999999999999999999999999999 88 789999
Q ss_pred cceecccccccCCC--ceeEEEEeccccH
Q 008430 457 DYVHRIGRTGRGGS--MGQATSFYTDRDM 483 (565)
Q Consensus 457 ~~~Q~~GR~~R~g~--~g~~~~~~~~~~~ 483 (565)
+|.||+|||||.|. .|.|+++++..+.
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999884 7999999987763
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.4e-45 Score=392.65 Aligned_cols=332 Identities=20% Similarity=0.281 Sum_probs=197.6
Q ss_pred CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
+..+|+++|.++++.++.|+++++++|||+|||++|++|++..+.... ...++++|||+|+++|+.|+.+.+++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999999999999999999988876542 12367899999999999999999999987
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-CCCCceEEEecchhHhhcCCCHHHH-HHHHHh-
Q 008430 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQI-REVMQN- 296 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~-~~~~~~~iIiDE~H~~~~~~~~~~~-~~i~~~- 296 (565)
.. ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+....+ ...+..
T Consensus 81 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 81 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 65 6888999998876655555556799999999999999988776 7889999999999999877643222 222221
Q ss_pred ---CCCCCcEEEEEeecChH-----------HHHHHHHHcCCCeEEEeCCcC-------CCCCceEEEEEEe--------
Q 008430 297 ---LPDKHQTLLFSATMPVE-----------IEALAQEYLTDPVQVKVGKVS-------SPTANVIQILEKV-------- 347 (565)
Q Consensus 297 ---~~~~~~~l~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------- 347 (565)
..+..+++++||||... +..+.. .+.... +...... .............
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCS-YLDIQA-ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHH-HHTCSE-EECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHH-hcCCeE-ecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 13467899999999531 111111 111111 1100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008430 348 -------------------------------------------------------------------------------- 347 (565)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (565)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 317 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------ccchHHHHHHHHHHHHHHhhhhcCCCCCe
Q 008430 348 ---------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 348 ---------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
....|...+.+.+..... ..+..+
T Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~-----~~~~~k 392 (556)
T 4a2p_A 318 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR-----YNPQTR 392 (556)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHH-----HCTTCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhc-----CCCCce
Confidence 001122222222222111 134567
Q ss_pred EEEEecccchHHHHHHHHHHc------------CCceeEecCCCCHHHHHHHHHHhhc-CCceEEEEcCcccCCCCccCc
Q 008430 377 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v 443 (565)
+||||+++.+++.+++.|.+. |.....+||++++++|.+++++|++ |+++|||||+++++|||+|++
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 999999999999999999876 4555667888999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHH
Q 008430 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 484 (565)
++||+||+|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999 998 789999999887654
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-44 Score=398.42 Aligned_cols=332 Identities=19% Similarity=0.257 Sum_probs=264.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHh-HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~-l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.|+++++++.+.+.+...|+.+|+++|.++++. +..++++++++|||+|||++|.++++..+... +++++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 488999999999999999999999999999998 78899999999999999999999999887753 6789999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|+++.++++... ++.++.++|+...... ...+++|+|+||++|...+......+.++++|||||+|+
T Consensus 75 ~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred cCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999755432 6789999987654321 224689999999999988887666688999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEE------EEec-----c
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL------EKVS-----E 349 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~ 349 (565)
+.+.++...+..++..++...|+|++|||++.. ..+..++..+. +... .. +..+...+ .... .
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~--~r-p~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAEL-IVSD--WR-PVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEE-EECC--CC-SSEEEEEEEETTEEEETTSCEEEC
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCcc-cCCC--CC-CCcceEEEEeCCeeeccccchhhh
Confidence 998888999999988887788999999999752 33444554221 1111 00 11111111 0111 1
Q ss_pred chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc------------------C-------------
Q 008430 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------------------G------------- 398 (565)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~------------------~------------- 398 (565)
......+.+.+ . +++++||||+++++|+.+++.|.+. +
T Consensus 224 ~~~~~~~~~~~----~-------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 292 (720)
T 2zj8_A 224 SSWEELVYDAI----R-------KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA 292 (720)
T ss_dssp SSTTHHHHHHH----H-------TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHH
T ss_pred hHHHHHHHHHH----h-------CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHH
Confidence 12222222222 1 2246999999999999999998763 1
Q ss_pred --CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cC----CCCCcccceecccccccC
Q 008430 399 --LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD----LPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 399 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~----~~~s~~~~~Q~~GR~~R~ 468 (565)
..+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 293 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 293 IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 24889999999999999999999999999999999999999999999998 66 578999999999999998
Q ss_pred C--CceeEEEEecccc
Q 008430 469 G--SMGQATSFYTDRD 482 (565)
Q Consensus 469 g--~~g~~~~~~~~~~ 482 (565)
| ..|.|++++++.+
T Consensus 373 g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDD 388 (720)
T ss_dssp TTCSEEEEEEECSSSC
T ss_pred CCCCCceEEEEecCcc
Confidence 8 4799999998877
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.3e-45 Score=400.52 Aligned_cols=345 Identities=21% Similarity=0.282 Sum_probs=218.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHH
Q 008430 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
..+..+|+.+|+++|.++++.++.|+++|+++|||+|||++|+++++..+..... +.++++|||+|+++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999987765421 1246899999999999999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-CCCCceEEEecchhHhhcCC-CHHHHH
Q 008430 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIR 291 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~-~~~~~~~iIiDE~H~~~~~~-~~~~~~ 291 (565)
+++++... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.. +...+.
T Consensus 81 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99998653 6889999998765444444556799999999999999988766 68889999999999987654 222222
Q ss_pred HHHHh-----CCCCCcEEEEEeecC-------hHHHHHHHH----------------------HcCCCeEEEeCCcCCCC
Q 008430 292 EVMQN-----LPDKHQTLLFSATMP-------VEIEALAQE----------------------YLTDPVQVKVGKVSSPT 337 (565)
Q Consensus 292 ~i~~~-----~~~~~~~l~~SAT~~-------~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 337 (565)
..+.. ..+..++|+|||||. ......+.. +...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 245678999999997 222111111 11122111100000000
Q ss_pred C-------------------------c--------------------------eEEEEEEe-------------------
Q 008430 338 A-------------------------N--------------------------VIQILEKV------------------- 347 (565)
Q Consensus 338 ~-------------------------~--------------------------~~~~~~~~------------------- 347 (565)
. . ........
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0 0 00000000
Q ss_pred ---------------------------------------------------------ccchHHHHHHHHHHHHHHhhhhc
Q 008430 348 ---------------------------------------------------------SENEKVDRLLALLVEEAFLAEKS 370 (565)
Q Consensus 348 ---------------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~ 370 (565)
....+...+...+.... .
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~-----~ 394 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-----H 394 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH-----T
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----c
Confidence 01122333333332211 1
Q ss_pred CCCCCeEEEEecccchHHHHHHHHHHcC----CceeEe--------cCCCCHHHHHHHHHHhhc-CCceEEEEcCcccCC
Q 008430 371 CHPFPLTIVFVERKTRCDEVSEALVAEG----LHAVAL--------HGGRNQSDRESALRDFRN-GSTNILVATDVASRG 437 (565)
Q Consensus 371 ~~~~~~~liF~~s~~~a~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~G 437 (565)
..+..++||||+++..++.+++.|...+ +.+..+ ||++++++|.+++++|++ |+++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 1244579999999999999999999988 888888 559999999999999998 999999999999999
Q ss_pred CCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
||+|++++||+||+|+++..|+||+|| ||. +.|.+++++...+......+
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999 998 77999999988776554444
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-44 Score=397.30 Aligned_cols=332 Identities=19% Similarity=0.256 Sum_probs=257.7
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 122 ~f~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
+|++++ +++.+.+.++..|+.+|+++|.++++.+..++++++++|||+|||+++.++++..+.. +++++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 477777 8999999999999999999999999999999999999999999999999999887653 567999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
++|+++|+.|+++.++++.. . ++.++.++|+...... ...+++|+|+||++|...+......+.++++|||||+|
T Consensus 74 i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred EeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 99999999999999964432 2 6788889887654321 12468999999999999888866668899999999999
Q ss_pred HhhcCCCHHHHHHHHHhC---CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEE------EEeccc
Q 008430 280 RMLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL------EKVSEN 350 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 350 (565)
++.+.++...+..++..+ .+..|+|+||||+++ . ..+..++..+. +.... . +..+...+ ......
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~-~~~~~~l~~~~-~~~~~--r-~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 149 LLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-V-TEIAEWLDADY-YVSDW--R-PVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-H-HHHHHHTTCEE-EECCC--C-SSCEEEEEECSSEEEEEETT
T ss_pred ecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-H-HHHHHHhCCCc-ccCCC--C-CccceEEEeeCCeeeccCcc
Confidence 999888888777776555 567899999999985 2 33444555332 11111 0 11111110 011100
Q ss_pred -------hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--------------------------
Q 008430 351 -------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------- 397 (565)
Q Consensus 351 -------~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-------------------------- 397 (565)
.....+.+.+ . +++++||||+++++++.+++.|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~----~-------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV----A-------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEEECCHHHHHHHHH----H-------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred hhhhhhhhHHHHHHHHH----h-------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 0222222221 1 2346999999999999999998753
Q ss_pred ----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cC---CCCCcccceecccccc
Q 008430 398 ----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD---LPKTVEDYVHRIGRTG 466 (565)
Q Consensus 398 ----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~---~~~s~~~~~Q~~GR~~ 466 (565)
+..+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|+||+||||
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 135788999999999999999999999999999999999999999999998 66 6889999999999999
Q ss_pred cCC--CceeEEEEeccccH
Q 008430 467 RGG--SMGQATSFYTDRDM 483 (565)
Q Consensus 467 R~g--~~g~~~~~~~~~~~ 483 (565)
|.| ..|.|+++++..+.
T Consensus 372 R~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp CTTTCSCEEEEEECCGGGH
T ss_pred CCCCCCCceEEEEecCccH
Confidence 988 47999999998873
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-43 Score=392.99 Aligned_cols=318 Identities=21% Similarity=0.282 Sum_probs=251.8
Q ss_pred CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
+| +|+++|.++++.+..|+++++++|||+|||++|.++++..+. .+.++||++|+++|+.|+++.|+++++
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 44 499999999999999999999999999999999888877653 367899999999999999999999874
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCC
Q 008430 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~ 299 (565)
.++.++|+... ..+++|+|+||++|.+++......+.++++|||||+|++.+.+++..+..++..+++
T Consensus 155 -----~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 155 -----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp -----CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred -----CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 57788888642 346899999999999998888788889999999999999999899999999999999
Q ss_pred CCcEEEEEeecChHHH--HHHHHHcCCCeEEEeCCcCCCCCceEEEEEE---------ecc-------------------
Q 008430 300 KHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQILEK---------VSE------------------- 349 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------- 349 (565)
..|+|++|||++.... ..+......+..+....... ..+.+.+.. +..
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 9999999999986532 33444445455544332211 112222111 000
Q ss_pred ---------------------------chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCC---
Q 008430 350 ---------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL--- 399 (565)
Q Consensus 350 ---------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~--- 399 (565)
......++..+.. ....++||||+++..|+.+++.|...++
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~---------~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~ 371 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK---------KKYNPVIVFSFSKRDCEELALKMSKLDFNSD 371 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHH---------HTCCSEEEEESSHHHHHHHHHTTTTSCCCCH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHh---------cCCCCEEEEECCHHHHHHHHHHHHhCCCCCh
Confidence 0001111111111 1223699999999999999999876443
Q ss_pred ------------------------------------ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCc
Q 008430 400 ------------------------------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 400 ------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v 443 (565)
.+..+||++++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 372 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 372 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCc
Confidence 27789999999999999999999999999999999999999999
Q ss_pred cEEEE----cCC----CCCcccceecccccccCCC--ceeEEEEeccc-cHHHHHHH
Q 008430 444 AHVVN----LDL----PKTVEDYVHRIGRTGRGGS--MGQATSFYTDR-DMLLVAQI 489 (565)
Q Consensus 444 ~~Vi~----~~~----~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-~~~~~~~l 489 (565)
++||+ ||. |.++..|+||+|||||.|. .|.|++++++. +...+.++
T Consensus 452 ~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred eEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999 998 8899999999999999997 59999999865 54444443
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-43 Score=392.32 Aligned_cols=336 Identities=20% Similarity=0.265 Sum_probs=205.0
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+|+.+|+++|.++++.++.|+++|+++|||+|||++|++|++..+.... .+.++++|||+|+++|+.|+.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999988876642 123678999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-CCCCceEEEecchhHhhcCCCH-HHHHHHHH
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFE-PQIREVMQ 295 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~-~~~~~~~iIiDE~H~~~~~~~~-~~~~~i~~ 295 (565)
+... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.. ..+...+.
T Consensus 320 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8765 6889999999876665556667899999999999999987766 7888999999999998876532 22222222
Q ss_pred h----CCCCCcEEEEEeecCh-----------HHHHHHH------------------HHcCCCeEEEeCCcCCCCCc---
Q 008430 296 N----LPDKHQTLLFSATMPV-----------EIEALAQ------------------EYLTDPVQVKVGKVSSPTAN--- 339 (565)
Q Consensus 296 ~----~~~~~~~l~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--- 339 (565)
. ..+..+++++||||.. .+..+.. .++..+..............
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2 1456789999999952 1111111 11111111110000000000
Q ss_pred ---------------------eEEEE-EEec-------------------------------------------------
Q 008430 340 ---------------------VIQIL-EKVS------------------------------------------------- 348 (565)
Q Consensus 340 ---------------------~~~~~-~~~~------------------------------------------------- 348 (565)
+.... ....
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 0000
Q ss_pred ----------------------------------------------------cchHHHHHHHHHHHHHHhhhhcCCCCCe
Q 008430 349 ----------------------------------------------------ENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 349 ----------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
...|...+...+.... ...+..+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~-----~~~~~~k 633 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY-----RYNPQTR 633 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH-----HHCSSCC
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh-----ccCCCCe
Confidence 0111112222221111 1134567
Q ss_pred EEEEecccchHHHHHHHHHHc------------CCceeEecCCCCHHHHHHHHHHhhc-CCceEEEEcCcccCCCCccCc
Q 008430 377 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v 443 (565)
+||||+++.+++.+++.|.+. |..+..+||++++.+|..++++|++ |+++|||||+++++|||+|+|
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v 713 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCC
T ss_pred EEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhC
Confidence 999999999999999999874 5566677899999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHH
Q 008430 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 484 (565)
++||+||+|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 714 ~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999 999 889999999887543
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-43 Score=367.80 Aligned_cols=326 Identities=23% Similarity=0.268 Sum_probs=244.5
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|+++|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.||.++++++++. +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-P 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS-C
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc-c
Confidence 7999999999999998 99999999999999998888776652 3677999999999999999999998742 2
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCc
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
...+..+.|+........ ...+++|+|+||+.|...+....+.+.++++|||||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 458888888887665433 3346899999999999998887788889999999999999865444444455554456778
Q ss_pred EEEEEeecChH---HHHHHHHHcCCCeEEEeCCcCC-----CCCceEEEEEEec--------------------------
Q 008430 303 TLLFSATMPVE---IEALAQEYLTDPVQVKVGKVSS-----PTANVIQILEKVS-------------------------- 348 (565)
Q Consensus 303 ~l~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------- 348 (565)
++++||||... +......+.............. ............+
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 2333332222211111110000 0001111000000
Q ss_pred --------------------------------------------------------------------------------
Q 008430 349 -------------------------------------------------------------------------------- 348 (565)
Q Consensus 349 -------------------------------------------------------------------------------- 348 (565)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred ----------------------cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecC
Q 008430 349 ----------------------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 406 (565)
Q Consensus 349 ----------------------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~ 406 (565)
...|...+.+.+...... .+..++||||+++..++.+++.|...|+.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g 393 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 393 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEec
Confidence 011122222222221100 34567999999999999999999999999999999
Q ss_pred --------CCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEe
Q 008430 407 --------GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 407 --------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 478 (565)
+++..+|.+++++|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.++
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~ 472 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILM 472 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred ccccHH
Q 008430 479 TDRDML 484 (565)
Q Consensus 479 ~~~~~~ 484 (565)
.+.+..
T Consensus 473 ~~~t~e 478 (494)
T 1wp9_A 473 AKGTRD 478 (494)
T ss_dssp ETTSHH
T ss_pred ecCCHH
Confidence 887543
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.7e-43 Score=396.07 Aligned_cols=323 Identities=20% Similarity=0.249 Sum_probs=253.6
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ +|+++|+++++.++.|++++++||||+|||++|+++++..+ . .++++|||+|+++|+.|+++.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~-------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R-------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-T-------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-h-------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 4577 79999999999999999999999999999998877766654 2 4788999999999999999999996
Q ss_pred hhcCCCceEEEEECCCCH---HHHHHHHhCC-CcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhc----------
Q 008430 218 SRSLDSFKTAIVVGGTNI---AEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD---------- 283 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~---------- 283 (565)
. . .++.+..++|+... ......+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 145 ~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 A-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp S-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred h-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 5 3 47899999999887 4455555554 99999999999877764 5677899999999987654
Q ss_pred -CCCHHH-HHHHHHhCC-----------CCCcEEEEEee-cChHHHH-HHHHHcCCCeEEEeCCcCCCCCceEEEEEEec
Q 008430 284 -MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIEA-LAQEYLTDPVQVKVGKVSSPTANVIQILEKVS 348 (565)
Q Consensus 284 -~~~~~~-~~~i~~~~~-----------~~~~~l~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (565)
.+|... +..++..++ ...|++++||| .+..+.. .....+. +.+........++.+.+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC-
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec-
Confidence 677777 788888776 78899999999 4544432 2333332 22222333445565555544
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCcee-EecCCCCHHHHHHHHHHhhcCCceE
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
.+...+...+... ++++||||++++.|+.+++.|...|+.+. .+|| +|.+ ++.|++|+++|
T Consensus 296 --~k~~~L~~ll~~~----------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINI 357 (1104)
T ss_dssp --CCHHHHHHHHHHH----------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSE
T ss_pred --CHHHHHHHHHHhc----------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCE
Confidence 3445555555441 13599999999999999999999999998 9998 2555 99999999999
Q ss_pred EEE----cCcccCCCCccC-ccEEEEcCCCC-------------------------------------------------
Q 008430 428 LVA----TDVASRGLDVMG-VAHVVNLDLPK------------------------------------------------- 453 (565)
Q Consensus 428 Lv~----T~~~~~Gidip~-v~~Vi~~~~~~------------------------------------------------- 453 (565)
||| |+++++|||+|+ |++||+||+|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 437 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEF 437 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 999 999999999999 99999999998
Q ss_pred -----------------------CcccceecccccccCCCce--eEEEEeccccHHHHHHHHHHHHhh
Q 008430 454 -----------------------TVEDYVHRIGRTGRGGSMG--QATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 454 -----------------------s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~~~~~ 496 (565)
++..|+||+||+||.|..| .++.++..+|...++.|++.+...
T Consensus 438 ~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 438 VEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLI 505 (1104)
T ss_dssp HHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhh
Confidence 6668999999999965432 344444447888888888887643
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-42 Score=365.58 Aligned_cols=323 Identities=19% Similarity=0.221 Sum_probs=251.5
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ +|+++|..+++.++.|+ |+.++||+|||++|++|++...+. |+.++||+||++||.|..+++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999855432 567999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhh-cCC----
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG---- 285 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~-~~~---- 285 (565)
+..+ ++++++++||......... .+++|+|+||++| ++++..+ .+.+..+.++||||||.|+ +.+
T Consensus 148 ~~~l-gl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFL-GLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHT-TCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 8876 7999999999887654433 4699999999999 7776654 2557789999999999988 653
Q ss_pred -----------CHHHHHHHHHhCCC---------CCcEE-----------------EEEeecCh---HHHHHH--HHHcC
Q 008430 286 -----------FEPQIREVMQNLPD---------KHQTL-----------------LFSATMPV---EIEALA--QEYLT 323 (565)
Q Consensus 286 -----------~~~~~~~i~~~~~~---------~~~~l-----------------~~SAT~~~---~~~~~~--~~~~~ 323 (565)
+...+..|+..+++ ..|++ ++|||.+. .+...+ ..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 56778889888863 56776 88999753 222222 11221
Q ss_pred -CCeEEE-------eC-----------------------------C----------------------------------
Q 008430 324 -DPVQVK-------VG-----------------------------K---------------------------------- 332 (565)
Q Consensus 324 -~~~~~~-------~~-----------------------------~---------------------------------- 332 (565)
+...+. +. .
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 110000 00 0
Q ss_pred ------------cCCCCCce-EEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCC
Q 008430 333 ------------VSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 333 ------------~~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~ 399 (565)
...+.... ...+.+....+|...++..+...... +.++||||+|++.++.|++.|...|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-------~~pvLVft~s~~~se~Ls~~L~~~gi 457 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-------GQPVLVGTVAVETSELISKLLKNKGI 457 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-------TCCEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 00000000 01134455667777777777654322 12599999999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCcc--------CccEEEEcCCCCCcccceecccccccCCCc
Q 008430 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSM 471 (565)
Q Consensus 400 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip--------~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 471 (565)
++..+||++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+++.|.|...|+||+||+||.|.+
T Consensus 458 ~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 458 PHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp CCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred CEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC
Confidence 999999999888887666666655 5999999999999999 788999999999999999999999999999
Q ss_pred eeEEEEeccccH
Q 008430 472 GQATSFYTDRDM 483 (565)
Q Consensus 472 g~~~~~~~~~~~ 483 (565)
|.+++|++.+|.
T Consensus 536 G~s~~~vs~eD~ 547 (844)
T 1tf5_A 536 GITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEEETTSS
T ss_pred CeEEEEecHHHH
Confidence 999999998764
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.5e-44 Score=392.65 Aligned_cols=329 Identities=20% Similarity=0.262 Sum_probs=222.9
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH-HHHHHHHhhc
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~-~~~~~~~~~~ 220 (565)
.+|+++|.++++.++.|+++|+++|||+|||++|++|++..+..... .+.++++|||+|+++|+.|+ .+++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 37999999999999999999999999999999999999887665311 11237799999999999999 9999999864
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHH------HcCCCCCCCceEEEecchhHhhcCC-CHHHHHHH
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL------QQGNTSLSRVSFVILDEADRMLDMG-FEPQIREV 293 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l------~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i 293 (565)
.+.+..++|+.........+.++++|+|+||++|.+.+ ....+.+.++++|||||||++...+ +...+...
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 47889999987655444455577999999999999887 4445678889999999999986543 22222222
Q ss_pred HHh----C---------CCCCcEEEEEeecChH-----------HHHHHHHHcCCCeEEEeCC-----cCCCCCceEEEE
Q 008430 294 MQN----L---------PDKHQTLLFSATMPVE-----------IEALAQEYLTDPVQVKVGK-----VSSPTANVIQIL 344 (565)
Q Consensus 294 ~~~----~---------~~~~~~l~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 344 (565)
+.. . .+..++|++||||... +..+...+....+...... .....+......
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 221 1 1457899999999862 1111111111000000000 000000000000
Q ss_pred EEecc---------------------------------------------------------------------------
Q 008430 345 EKVSE--------------------------------------------------------------------------- 349 (565)
Q Consensus 345 ~~~~~--------------------------------------------------------------------------- 349 (565)
.....
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000
Q ss_pred ----------------------------------------------------------chHHHHHHHHHHHHHHhhhhcC
Q 008430 350 ----------------------------------------------------------NEKVDRLLALLVEEAFLAEKSC 371 (565)
Q Consensus 350 ----------------------------------------------------------~~k~~~l~~~l~~~~~~~~~~~ 371 (565)
..+...+.+.+.... ..
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~-----~~ 396 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQY-----TR 396 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-----hc
Confidence 000000111111100 01
Q ss_pred CC-CCeEEEEecccchHHHHHHHHHHc------CCceeEecCC--------CCHHHHHHHHHHhhcCCceEEEEcCcccC
Q 008430 372 HP-FPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGG--------RNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 372 ~~-~~~~liF~~s~~~a~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
.+ ..++||||+++..++.+++.|.+. |+.+..+||+ |++.+|.+++++|++|+++|||||+++++
T Consensus 397 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 397 TEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 12 567999999999999999999987 8999999999 99999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc
Q 008430 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
|||+|++++||+||+|+|+..|+||+|||||.| +.+++++...
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999999987665 4444444443
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-42 Score=386.71 Aligned_cols=335 Identities=20% Similarity=0.266 Sum_probs=202.1
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..++.+|+++|.++++.++.|+++++++|||+|||++|+++++..+.... .+.++++|||+|+++|+.|+.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999998877654431 123678999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-CCCCceEEEecchhHhhcCCC-HHHHHHHHH
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGF-EPQIREVMQ 295 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~-~~~~~~~iIiDE~H~~~~~~~-~~~~~~i~~ 295 (565)
+... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. ...+..++.
T Consensus 320 ~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8764 6889999999866554445555689999999999999987766 688899999999999887642 222223322
Q ss_pred h----CCCCCcEEEEEeecCh-----------HHHHHH------------------HHHcCCCeEEEeCCcCCCCCc---
Q 008430 296 N----LPDKHQTLLFSATMPV-----------EIEALA------------------QEYLTDPVQVKVGKVSSPTAN--- 339 (565)
Q Consensus 296 ~----~~~~~~~l~~SAT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 339 (565)
. ..+..+++++||||.. .+..+. ..++..+..............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1445789999999952 111111 111122221111000000000
Q ss_pred ---------------------eEEEE-EEecc------------------------------------------------
Q 008430 340 ---------------------VIQIL-EKVSE------------------------------------------------ 349 (565)
Q Consensus 340 ---------------------~~~~~-~~~~~------------------------------------------------ 349 (565)
+.... .....
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 00000
Q ss_pred -----------------------------------------------------chHHHHHHHHHHHHHHhhhhcCCCCCe
Q 008430 350 -----------------------------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 350 -----------------------------------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
..|...+.+.+.. .....++.+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~-----~~~~~~~~r 633 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD-----AYRYNPQTR 633 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH-----TTTSCTTCC
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH-----HhccCCCCe
Confidence 0000001111100 011234578
Q ss_pred EEEEecccchHHHHHHHHHHc------------CCceeEecCCCCHHHHHHHHHHhhc-CCceEEEEcCcccCCCCccCc
Q 008430 377 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v 443 (565)
+||||+++..++.+++.|.+. |..+..+||+|++.+|.+++++|++ |+++|||||+++++|||+|+|
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v 713 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCC
T ss_pred EEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhC
Confidence 999999999999999999987 5556667899999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccH
Q 008430 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 483 (565)
++||+||+|+|+..|+||+|| ||. +.|.+++++...+.
T Consensus 714 ~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999 998 77999999987654
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.5e-43 Score=393.62 Aligned_cols=321 Identities=20% Similarity=0.280 Sum_probs=250.4
Q ss_pred HHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
...|+. | ++|.++++.++.|++++++||||+|||+ |++|++..+.. .++++|||+|+++|+.|+.+.+++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHH
Confidence 347998 9 9999999999999999999999999998 88999887765 377899999999999999999999
Q ss_pred HhhcCCCc----eEEEEECCCCHHHH---HHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHH
Q 008430 217 LSRSLDSF----KTAIVVGGTNIAEQ---RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ 289 (565)
Q Consensus 217 ~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~ 289 (565)
++... ++ .++.++|+.....+ ...+.. ++|+|+||++|.+++.. +.++++|||||||++.+ +...
T Consensus 122 l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 122 YAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHH
T ss_pred HHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--cccc
Confidence 98765 45 88999999887663 333444 99999999999986654 66899999999999997 4677
Q ss_pred HHHHHHhCC-----------CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHH
Q 008430 290 IREVMQNLP-----------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 290 ~~~i~~~~~-----------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (565)
+..++..+. ...|++++|||++.. ......++..+..+.+........++.+.+. ...+...+..
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ 269 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSS 269 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHH
Confidence 777777663 457899999999876 4233233322222222222223334444443 2334344444
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEE----cCcc
Q 008430 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA----TDVA 434 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~ 434 (565)
.+... ..++||||+++..|+.+++.|... +.+..+||++ ..+++.|++|+++|||| |+++
T Consensus 270 ll~~~----------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 270 ILEKL----------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp HHTTS----------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred HHhhc----------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 33221 246999999999999999999988 9999999998 37889999999999999 9999
Q ss_pred cCCCCccCc-cEEEEcCCC-------------------------------------------------------------
Q 008430 435 SRGLDVMGV-AHVVNLDLP------------------------------------------------------------- 452 (565)
Q Consensus 435 ~~Gidip~v-~~Vi~~~~~------------------------------------------------------------- 452 (565)
++|||+|+| ++||++|.|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCcccceecccccccCCCce--eEEEEeccccHHHHHHHHHHHHh
Q 008430 453 ----------KTVEDYVHRIGRTGRGGSMG--QATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 453 ----------~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
.+...|+||+||+||.|..| .+++++...|...+..+++.+..
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987776 48888888888888888888775
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.2e-41 Score=378.69 Aligned_cols=307 Identities=21% Similarity=0.254 Sum_probs=237.7
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|+++|.++++.++.|+++++++|||+|||++|++++...+. .++++||++|+++|+.|+++.+++.+.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~--- 107 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD--- 107 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC---
Confidence 589999999999999999999999999999999888876543 377899999999999999999998764
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCc
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
++.++.++|+.. ....++|+|+||++|.+.+......+.++++|||||||++.++++...+..++..+++..|
T Consensus 108 ~~~v~~l~G~~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQ-------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCE-------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCc-------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 567888888863 3456899999999999999887777889999999999999999988889999999999999
Q ss_pred EEEEEeecChHH--HHHHHHHcCCCeEEEeCCcCCCCCceEEEEE-------Eec-------------------------
Q 008430 303 TLLFSATMPVEI--EALAQEYLTDPVQVKVGKVSSPTANVIQILE-------KVS------------------------- 348 (565)
Q Consensus 303 ~l~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------------------- 348 (565)
+|++|||++... ...+......+..+....... ..+...+. .+.
T Consensus 181 iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 181 FILLSATVPNTYEFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEEcCCCCChHHHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 999999997553 222222222233222211111 11111110 000
Q ss_pred -------------------------------------------------------------cchHHHHHHHHHHHHHHhh
Q 008430 349 -------------------------------------------------------------ENEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 349 -------------------------------------------------------------~~~k~~~l~~~l~~~~~~~ 367 (565)
...+...++..+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~----- 333 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK----- 333 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHH-----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh-----
Confidence 01112222222221
Q ss_pred hhcCCCCCeEEEEecccchHHHHHHHHHHcCC---------------------------------------ceeEecCCC
Q 008430 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------------------------------------HAVALHGGR 408 (565)
Q Consensus 368 ~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~---------------------------------------~~~~~~~~~ 408 (565)
....++||||++++.|+.+++.|.+.++ .+..+||++
T Consensus 334 ----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 334 ----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp ----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred ----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 2334799999999999999999977655 478999999
Q ss_pred CHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCC---------CcccceecccccccCC--CceeEEEE
Q 008430 409 NQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---------TVEDYVHRIGRTGRGG--SMGQATSF 477 (565)
Q Consensus 409 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~g~~~~~ 477 (565)
++.+|..+++.|.+|+++|||||+++++|||+|+ ..||+++.+. |+..|+||+|||||.| ..|.++++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 5566655554 8999999999999998 46888888
Q ss_pred ec
Q 008430 478 YT 479 (565)
Q Consensus 478 ~~ 479 (565)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.8e-42 Score=370.92 Aligned_cols=326 Identities=21% Similarity=0.256 Sum_probs=241.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHhHhCC------CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 132 IMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 132 i~~~l~~~~~~~~~~~Q~~~l~~l~~g------~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
+.+.+...+| +|+++|+++++.++.+ .++|++|+||+|||++|+++++..+.. +.+++|++|+++
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr~ 428 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHH
Confidence 3344577888 9999999999998865 589999999999999999999887653 678999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---H-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh
Q 008430 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+.|+++.+++++... ++.+..++|+....+.... + .+.++|+|+||+.|.+ ...+.++++|||||+|++
T Consensus 429 La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 9999999999998764 6889999999887654322 2 3469999999988753 466788999999999986
Q ss_pred hcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHH
Q 008430 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLV 361 (565)
Q Consensus 282 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 361 (565)
.... ...+.......++++|||||........ ++.+.....+.........+. ..+....+...+...+.
T Consensus 503 g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~---~~~~~~~~~~~l~~~i~ 572 (780)
T 1gm5_A 503 GVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQ---TMLVPMDRVNEVYEFVR 572 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCE---ECCCCSSTHHHHHHHHH
T ss_pred hHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceE---EEEeccchHHHHHHHHH
Confidence 4221 1222223346789999999876543322 233221112221111111222 22222334445555554
Q ss_pred HHHHhhhhcCCCCCeEEEEecccc--------hHHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEE
Q 008430 362 EEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 362 ~~~~~~~~~~~~~~~~liF~~s~~--------~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
+.. ..+.+++|||+.++ .++.+++.|.+ .++.+..+||+|++++|..+++.|++|+++||||
T Consensus 573 ~~l-------~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 573 QEV-------MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHT-------TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHH-------hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 432 22346999999764 47888888887 4788999999999999999999999999999999
Q ss_pred cCcccCCCCccCccEEEEcCCCC-CcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 431 TDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
|+++++|||+|++++||++++|. +...|.||+||+||.|+.|.|++++.+.+......+
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 99999999999999999999986 688889999999999999999999985444433333
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.7e-40 Score=374.09 Aligned_cols=323 Identities=18% Similarity=0.175 Sum_probs=247.5
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHhHhC----CC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 127 CLHPSIMKDIE-FHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 127 ~l~~~i~~~l~-~~~~~~~~~~Q~~~l~~l~~----g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
++++...+.+. .++| +|+++|.++++.++. |+ ++|++++||+|||++|+++++..+. .+++++|
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEEE
Confidence 45566666663 4566 479999999999886 66 8999999999999999878776543 3678999
Q ss_pred EccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---H-hCCCcEEEEccHHHHHHHHcCCCCCCCceEEEe
Q 008430 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIi 275 (565)
++||++|+.|++++|++++... ++.+..+.+.....+.... + .+.++|+|+|++.+. ....+.++++|||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 9999999999999999988754 5788888887665544322 2 346999999998764 3466789999999
Q ss_pred cchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHH
Q 008430 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 355 (565)
||+|++. .....++..++...++++|||||.+.........+.+...+ .........+...+..... ..
T Consensus 732 DEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~----~~ 800 (1151)
T 2eyq_A 732 DEEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDS----MV 800 (1151)
T ss_dssp ESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCH----HH
T ss_pred echHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCH----HH
Confidence 9999953 33455566666678999999999776655544444332222 1111112233333332222 22
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc
Q 008430 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (565)
+...+.... ..+++++|||+++++++.+++.|.+. +..+..+||+|++.+|++++++|++|+++|||||++
T Consensus 801 i~~~il~~l-------~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v 873 (1151)
T 2eyq_A 801 VREAILREI-------LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp HHHHHHHHH-------TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred HHHHHHHHH-------hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 223332222 12356999999999999999999988 889999999999999999999999999999999999
Q ss_pred ccCCCCccCccEEEEcCC-CCCcccceecccccccCCCceeEEEEecccc
Q 008430 434 ASRGLDVMGVAHVVNLDL-PKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 434 ~~~Gidip~v~~Vi~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 482 (565)
+++|+|+|++++||++++ +.++..|+||+||+||.|+.|.|++++.+.+
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999998 5688999999999999999999999987653
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-40 Score=386.44 Aligned_cols=350 Identities=15% Similarity=0.193 Sum_probs=256.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 128 l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
+.+...+++...+|..++|+|.++++.++.+ ++++++||||+|||++|.++++..+... .+.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 4456778888888999999999999999865 5799999999999999999999988764 36689999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC--CCCCCceEEEecchhHhhcC
Q 008430 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~H~~~~~ 284 (565)
+.|.++.+++.++...+++++.++|+...... ...+++|+|||||+|..++.... ..+.++++|||||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 99999999987765447889999988654332 23458999999999977776532 23678999999999988764
Q ss_pred CCHHHHHHHH-------HhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHH
Q 008430 285 GFEPQIREVM-------QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 285 ~~~~~~~~i~-------~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (565)
.+..+..++ ...+++.|+|++|||+++. ..+...+-..+..+........+..+...+...........+.
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 455554443 3456788999999999753 3344333222222221111222223333333333222222222
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc----------------------------------CCceeE
Q 008430 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------------------GLHAVA 403 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~----------------------------------~~~~~~ 403 (565)
... +..........+.+++||||+++..|+.++..|... ...+..
T Consensus 1140 ~~~-~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1140 SMA-KPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp TTH-HHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhc-chHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 111 111111122234567999999999999888776431 234788
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cC------CCCCcccceecccccccCCC--c
Q 008430 404 LHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD------LPKTVEDYVHRIGRTGRGGS--M 471 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~------~~~s~~~~~Q~~GR~~R~g~--~ 471 (565)
+||++++.+|..+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999998884 22 24578999999999999986 6
Q ss_pred eeEEEEeccccHHHHHHH
Q 008430 472 GQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 472 g~~~~~~~~~~~~~~~~l 489 (565)
|.+++++...+...++.+
T Consensus 1299 G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHH
T ss_pred eEEEEEecchHHHHHHHH
Confidence 999999998887766554
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=9.3e-41 Score=353.28 Aligned_cols=323 Identities=20% Similarity=0.244 Sum_probs=227.9
Q ss_pred CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|. +|+++|..+++.++.|+ +..++||+|||++|++|++...+. ++.++||+||++||.|.++.+..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 454 89999999999999998 999999999999999999865432 5679999999999999999999999
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCCCceEEEecchhHhh-cCC-----
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG----- 285 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~~~~~iIiDE~H~~~-~~~----- 285 (565)
..+ ++++++++||....... ...+++|+||||++| ++++..+. ..+..+.++||||||+++ +.+
T Consensus 140 ~~l-gl~v~~i~GG~~~~~r~--~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 140 EFL-GLTVGINLPGMPAPAKR--EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHT-TCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred Hhc-CCeEEEEeCCCCHHHHH--HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 876 79999999998865433 334699999999999 78887652 567889999999999998 443
Q ss_pred ----------CHHHHHHHHHhCCC--------------------CCcEE------------------------EEEeecC
Q 008430 286 ----------FEPQIREVMQNLPD--------------------KHQTL------------------------LFSATMP 311 (565)
Q Consensus 286 ----------~~~~~~~i~~~~~~--------------------~~~~l------------------------~~SAT~~ 311 (565)
+...+..++..++. ..|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 45566777777753 34443 7899864
Q ss_pred hH---HHHHH--HHHcCC---------------------------------C----eEEEeCCcCCCCCceE--------
Q 008430 312 VE---IEALA--QEYLTD---------------------------------P----VQVKVGKVSSPTANVI-------- 341 (565)
Q Consensus 312 ~~---~~~~~--~~~~~~---------------------------------~----~~~~~~~~~~~~~~~~-------- 341 (565)
.- +...+ ..++.. + ..+.+.........+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 31 11111 011100 0 0011100000000000
Q ss_pred ---------------------------------------EEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEec
Q 008430 342 ---------------------------------------QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (565)
Q Consensus 342 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~ 382 (565)
..+.+....+|...+...+..... .+.++||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-------~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-------KGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-------TTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-------CCCCEEEEEC
Confidence 112344556677777776654321 2336999999
Q ss_pred ccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCc-------------------
Q 008430 383 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------- 443 (565)
Q Consensus 383 s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v------------------- 443 (565)
|++.++.|++.|.+.|+++..+||+..+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999888888888889888 599999999999999973
Q ss_pred ------------------cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHH
Q 008430 444 ------------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 444 ------------------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 484 (565)
.+||+++.|.|...|+|++||+||.|.+|.++.|++.+|..
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999987743
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.2e-39 Score=343.01 Aligned_cols=325 Identities=18% Similarity=0.223 Sum_probs=254.6
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ +|+++|..+++.++.|+ |+.++||+|||++|++|++...+. |+.++||+|+++||.|..+++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4687 99999999999999998 999999999999999999765543 567999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcC------CCCCCCceEEEecchhHhh-cC-----
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM----- 284 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~-~~----- 284 (565)
+..+ ++++++++||......... .+++|+|+||+.| ++++..+ ...+..+.++||||||.++ +.
T Consensus 176 ~~~l-GLsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 176 HRFL-GLQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHT-TCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 9886 7999999999886554333 3599999999999 7887764 3567789999999999998 32
Q ss_pred ----------CCHHHHHHHHHhCC---------CCCcEE-----------------EEEeecCh---HHHHHHH--HHcC
Q 008430 285 ----------GFEPQIREVMQNLP---------DKHQTL-----------------LFSATMPV---EIEALAQ--EYLT 323 (565)
Q Consensus 285 ----------~~~~~~~~i~~~~~---------~~~~~l-----------------~~SAT~~~---~~~~~~~--~~~~ 323 (565)
++...+..++..++ +..|++ ++|||.+. .+...+. .++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 36678889999997 567888 88999764 2222221 1221
Q ss_pred CC--------eEEEeCCc--------------------------------------------------------------
Q 008430 324 DP--------VQVKVGKV-------------------------------------------------------------- 333 (565)
Q Consensus 324 ~~--------~~~~~~~~-------------------------------------------------------------- 333 (565)
.. ..+.+...
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 11 00000000
Q ss_pred -------------CCCCCce-EEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCC
Q 008430 334 -------------SSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 334 -------------~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~ 399 (565)
..+.... ...+.+....+|...++..+...... +.++||||+|++.++.|++.|.+.|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~-------gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAK-------GQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHT-------TCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 0000000 01134455667777777777654322 22599999999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCc------------------------------------
Q 008430 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------ 443 (565)
Q Consensus 400 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v------------------------------------ 443 (565)
++..+||+..+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999998877777777888887 599999999999999975
Q ss_pred ----------------cEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 444 ----------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 444 ----------------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
.+||+++.|.|...|+|++||+||.|.+|.+..|++.+|...
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999999887543
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.4e-41 Score=355.53 Aligned_cols=312 Identities=15% Similarity=0.144 Sum_probs=232.2
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.+++++++++||+|||++|+.++...+.. .++++|||+|+++|+.|+.++|+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 48999999999999999999999999999999998877766543 2448999999999999999999887433
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCC
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
....+..+.|+...... ...+.+|+|+|++.|... ....+.++++|||||||++. ...+..++..+.+..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~----~~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCC----cccHHHHHHhcccCc
Confidence 34678888887654432 446799999999987532 22456789999999999987 366788888887788
Q ss_pred cEEEEEeecChHHHHHH--HHHcCCCeEEEeCCc------CCCCCceEEEEEEeccc---------------------hH
Q 008430 302 QTLLFSATMPVEIEALA--QEYLTDPVQVKVGKV------SSPTANVIQILEKVSEN---------------------EK 352 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------------------~k 352 (565)
++++|||||+....... ..++. +..+..... ......+.......... .+
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 89999999976542211 12222 222211111 01111122222222111 11
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc-
Q 008430 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT- 431 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T- 431 (565)
...+.+.+.... .....++||||+ ..+++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||||
T Consensus 333 ~~~l~~~l~~~~------~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 333 NKWIAKLAIKLA------QKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HHHHHHHHHHHH------TTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred HHHHHHHHHHHH------hcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 111222222211 112334666666 899999999999998899999999999999999999999999999999
Q ss_pred CcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec
Q 008430 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
+++++|+|+|++++||++++|+++..|+|++||+||.|+.|..+++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998875555555
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.2e-40 Score=383.66 Aligned_cols=343 Identities=19% Similarity=0.240 Sum_probs=249.4
Q ss_pred CCCCCCCHHHHHHHHhHhC-CCCEEEEccCCChhHHHHHHHHHHHHHhcCCC---CCCCCCeEEEEccchhhHHHHHHHH
Q 008430 139 HEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---GRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~-g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~~lil~P~~~L~~Q~~~~~ 214 (565)
.||.+|+++|.++++.++. ++|+|++||||+|||++|.++++..+.+.... ...++.++|||+|+++|+.|.++.|
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 3789999999999998874 67899999999999999999999988764321 2335789999999999999999999
Q ss_pred HHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC--CCCCCceEEEecchhHhhcCCCHHHHHH
Q 008430 215 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIRE 292 (565)
Q Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 292 (565)
++.+... ++.++.++|+...... ...+++|+|||||++..++.... ..++++++|||||+|.+.+ ..+..++.
T Consensus 155 ~~~~~~~-gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 155 GKRLATY-GITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHTTT-TCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHhhC-CCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 9998775 6899999998764331 12468999999999966555432 1367899999999997765 56666655
Q ss_pred HHH-------hCCCCCcEEEEEeecChHHHHHHHHHcCCC--eEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008430 293 VMQ-------NLPDKHQTLLFSATMPVEIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 293 i~~-------~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 363 (565)
++. ..++..|+|++|||+++. +++ ..|+... ...........+..+.+.+......... .....+...
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~-~dv-A~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~-~~~~~~~~~ 306 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNY-EDV-ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAI-KRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTH-HHH-HHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCH-HHH-HHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchh-hhhHHHHHH
Confidence 443 346788999999999753 333 3444321 1111111111122233333333322221 111222222
Q ss_pred HHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-------------------------------------CCceeEecC
Q 008430 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------GLHAVALHG 406 (565)
Q Consensus 364 ~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-------------------------------------~~~~~~~~~ 406 (565)
...........+++||||++++.|+.+++.|.+. ...+..+||
T Consensus 307 ~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa 386 (1724)
T 4f92_B 307 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 386 (1724)
T ss_dssp HHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS
T ss_pred HHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC
Confidence 2222222234457999999999999988887541 124788999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE----cCC------CCCcccceecccccccCCC--ceeE
Q 008430 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LDL------PKTVEDYVHRIGRTGRGGS--MGQA 474 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~~------~~s~~~~~Q~~GR~~R~g~--~g~~ 474 (565)
+|++++|..+++.|++|.++|||||++++.|||+|.+++||. |++ |.++.+|.||+|||||.|. .|.+
T Consensus 387 gL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ 466 (1724)
T 4f92_B 387 GMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEG 466 (1724)
T ss_dssp SSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEE
Confidence 999999999999999999999999999999999999999985 443 3578999999999999874 6999
Q ss_pred EEEeccccHHHHHHH
Q 008430 475 TSFYTDRDMLLVAQI 489 (565)
Q Consensus 475 ~~~~~~~~~~~~~~l 489 (565)
++++...+...+..+
T Consensus 467 ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 467 ILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEESTTCCHHHHH
T ss_pred EEEecchhHHHHHHH
Confidence 999988776555443
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.6e-40 Score=344.35 Aligned_cols=287 Identities=20% Similarity=0.212 Sum_probs=212.8
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.||.++|++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~-~--- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGI-F--- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGG-G---
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHh-C---
Confidence 47999999999999999899999999999999998776653 45699999999999999999998 3
Q ss_pred CCce-EEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCC
Q 008430 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
+.. ++.+.|+.. ...+|+|+|++.+...+.. ...++++|||||+|++.+.+|. .++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~----~~~~~~~-~ 218 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-A 218 (472)
T ss_dssp -CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTH----HHHHTCC-C
T ss_pred -CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHH----HHHHhcC-C
Confidence 466 777777753 3579999999999766542 1245899999999999877664 3555554 5
Q ss_pred CcEEEEEeecChHHH--HHHHHHcCCCeEEEeCCcC-----CCCCceEEEEEE---------------------------
Q 008430 301 HQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVS-----SPTANVIQILEK--------------------------- 346 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------------- 346 (565)
.+++++||||..... ..+..++. +......... ............
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVG-GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITL 297 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTC-CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhC-CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 679999999973210 01111111 1111100000 000000000000
Q ss_pred ---------------------------------eccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHH
Q 008430 347 ---------------------------------VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEA 393 (565)
Q Consensus 347 ---------------------------------~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~ 393 (565)
.....+...+.+.+.. ..+.++||||++++.++.+++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---------~~~~k~lvF~~~~~~~~~l~~~ 368 (472)
T 2fwr_A 298 RRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---------HRKDKIIIFTRHNELVYRISKV 368 (472)
T ss_dssp TCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---------TSSSCBCCBCSCHHHHHHHHHH
T ss_pred cchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHH
Confidence 0112233333333332 2345799999999999999998
Q ss_pred HHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCc-e
Q 008430 394 LVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM-G 472 (565)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~-g 472 (565)
|. +..+||+++..+|+++++.|++|+++|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+. +
T Consensus 369 l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~ 443 (472)
T 2fwr_A 369 FL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKK 443 (472)
T ss_dssp TT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTC
T ss_pred hC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCc
Confidence 83 66899999999999999999999999999999999999999999999999999999999999999999865 4
Q ss_pred eEEE
Q 008430 473 QATS 476 (565)
Q Consensus 473 ~~~~ 476 (565)
.+++
T Consensus 444 ~~~i 447 (472)
T 2fwr_A 444 EAVL 447 (472)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5544
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.5e-41 Score=357.15 Aligned_cols=314 Identities=15% Similarity=0.179 Sum_probs=228.0
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 126 ~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
+++++.+++++... ...++|+|+.+++.+++|+++++++|||||||++|++|++..+.. .++++||++|+++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 44555555444332 367888888889999999999999999999999999999988776 3678999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC
Q 008430 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
|+.|+.+.++. ..+. +.+... . .....+..+.++|.+.+...+... ..+.++++|||||||++ +.+
T Consensus 227 La~Qi~~~l~~-------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 227 VAAEMEEALRG-------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHHHHHHHTTT-------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHH
T ss_pred HHHHHHHHhcC-------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Ccc
Confidence 99999987762 2233 222110 0 011123557788888887766554 45788999999999987 445
Q ss_pred CHHHHHHHHHhCC-CCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHH
Q 008430 286 FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEA 364 (565)
Q Consensus 286 ~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 364 (565)
+...+..++..++ ++.|+++||||++.....+.. .++..+.+... ++. .+...++..+.+
T Consensus 293 ~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 293 SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH-HHHHHHHHHHHh--
Confidence 5666666666654 578999999999765332111 11221211110 000 111112222221
Q ss_pred HhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCcc
Q 008430 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (565)
Q Consensus 365 ~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~ 444 (565)
..+++||||+++++|+.+++.|.+.++.+..+||+ +|.++++.|++|+++|||||+++++|||+| ++
T Consensus 354 --------~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 354 --------YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp --------CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred --------CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 12369999999999999999999999999999984 788899999999999999999999999998 99
Q ss_pred EE--------------------EEcCCCCCcccceecccccccCCC-ceeEEEEec---cccHHHHHHHHHHH
Q 008430 445 HV--------------------VNLDLPKTVEDYVHRIGRTGRGGS-MGQATSFYT---DRDMLLVAQIKKAI 493 (565)
Q Consensus 445 ~V--------------------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~~~~~~~~l~~~~ 493 (565)
+| |+++.|.+..+|+||+||+||.|. .|.+++|+. +.|...+..+++.+
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 88 667778999999999999999965 899999997 77777777777765
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.1e-38 Score=346.27 Aligned_cols=340 Identities=19% Similarity=0.239 Sum_probs=250.1
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC-CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
.++..|.++++++.+.+.+...+ ..|++.|+++++.++.+ ++++++||||+|||++ +|++...... ..+.+++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~---~~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEM---PHLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHC---GGGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhcc---ccCCCce
Confidence 45678999999999999998888 78899999999887754 5799999999999993 5655222111 0112667
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
+++++|+++|+.|+++.+...++...+..++....... ....+.+|+++|++++.+.+... ..+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 99999999999999988877654322233332222111 11246889999999998877654 457889999999
Q ss_pred chhH-hhcCCC-HHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHH
Q 008430 277 EADR-MLDMGF-EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~-~~~~~~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 354 (565)
|+|. ..+.++ ...+..+.... +..|+++||||++.+ .+..++.....+..... ...+...+..........
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCC---CCCEEEECCSSCCSCHHH
T ss_pred CccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCc---ccceEEEEecCCchhHHH
Confidence 9995 443221 23344444444 578899999999643 34456654444433321 123333333333334444
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH-----------cCCceeEecCCCCHHHHHHHHHHhh--
Q 008430 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-----------EGLHAVALHGGRNQSDRESALRDFR-- 421 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-- 421 (565)
..+..+...... .+.+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|.
T Consensus 289 ~~l~~l~~~~~~-----~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 289 SAIRTVLQIHAT-----EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp HHHHHHHHHHHH-----SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred HHHHHHHHHHHh-----cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 444444333221 2345799999999999999999985 5788999999999999999999999
Q ss_pred ---cCCceEEEEcCcccCCCCccCccEEEEcCC------------------CCCcccceecccccccCCCceeEEEEecc
Q 008430 422 ---NGSTNILVATDVASRGLDVMGVAHVVNLDL------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 422 ---~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 480 (565)
+|+.+|||||+++++|||+|++++||+++. |.|...|+||+|||||. ..|.|+.++++
T Consensus 364 ~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 364 HNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp SSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred cCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 999999999999999999999999999877 88999999999999999 78999999987
Q ss_pred ccH
Q 008430 481 RDM 483 (565)
Q Consensus 481 ~~~ 483 (565)
.+.
T Consensus 443 ~~~ 445 (773)
T 2xau_A 443 EAF 445 (773)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 45
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.2e-37 Score=292.53 Aligned_cols=236 Identities=43% Similarity=0.728 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChh
Q 008430 92 NPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGK 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGK 171 (565)
++++++.++...++.+.+ ...|.++.+|+++++++.+++.+...|+.+|+++|.++++.++.|+++++++|||+||
T Consensus 4 ~~~~~~~~~~~~~i~~~~----~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGK 79 (242)
T 3fe2_A 4 TAQEVETYRRSKEITVRG----HNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK 79 (242)
T ss_dssp --CHHHHHHHHHTEEEES----SCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCH
T ss_pred CHHHHHHHHhcCceEEeC----CCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHH
Confidence 456788899888888764 3568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEE
Q 008430 172 TAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 251 (565)
Q Consensus 172 T~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~ 251 (565)
|++|++|++..+..........++++|||+|+++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+
T Consensus 80 T~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 80 TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 99999999998876554444568899999999999999999999998765 68899999999988888888888999999
Q ss_pred ccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeC
Q 008430 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (565)
Q Consensus 252 T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
||++|.+.+......+.++++|||||||++.+++|...+..++..+++..|++++|||++..+..++..++.+|..+.++
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999988876
Q ss_pred C
Q 008430 332 K 332 (565)
Q Consensus 332 ~ 332 (565)
.
T Consensus 239 ~ 239 (242)
T 3fe2_A 239 A 239 (242)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.4e-39 Score=337.28 Aligned_cols=287 Identities=16% Similarity=0.205 Sum_probs=209.6
Q ss_pred CCCCCCHHHHHHHHhHhCCCCE-EEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 140 EYTRPTSIQAQAMPVALSGRDL-LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 140 ~~~~~~~~Q~~~l~~l~~g~~~-li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
|+.+|+|+|+ +++.+++++++ ++++|||||||++|++|++..+.. .++++||++|+++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcC--
Confidence 5678899985 79999999886 899999999999999999987765 367899999999999999988752
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHH-HhC
Q 008430 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM-QNL 297 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~-~~~ 297 (565)
..+......... ....+..|.++|++.+.+.+... ..+.++++|||||||++ +..+...+..+. ...
T Consensus 71 -----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 71 -----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 138 (451)
T ss_dssp -----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH
T ss_pred -----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc
Confidence 233222221110 11234678999999998777654 55778999999999976 222122222222 123
Q ss_pred CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeE
Q 008430 298 PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLT 377 (565)
Q Consensus 298 ~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~ 377 (565)
.++.|+++||||++...... +..++..+..... .+.... ..+...+.. ..+++
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~~~-------------~~~~~~l~~----------~~~~~ 191 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-IPERSW-------------NTGFDWITD----------YQGKT 191 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-CCSSCC-------------SSSCHHHHH----------CCSCE
T ss_pred CCCceEEEEccCCCccchhh---hcCCCceEecCcc-CCchhh-------------HHHHHHHHh----------CCCCE
Confidence 45789999999997643221 1222222222110 000000 001111111 12369
Q ss_pred EEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcC-------
Q 008430 378 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD------- 450 (565)
Q Consensus 378 liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~------- 450 (565)
||||+++++|+.+++.|.+.|+.+..+|+++ +..+++.|++|+++|||||+++++|+|+|+ ++||++|
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 9999999999999999999999999999975 467999999999999999999999999999 9999998
Q ss_pred -------------CCCCcccceecccccccCCC-ceeEEEEecc
Q 008430 451 -------------LPKTVEDYVHRIGRTGRGGS-MGQATSFYTD 480 (565)
Q Consensus 451 -------------~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 480 (565)
.|.+...|+||+||+||.|. .|.+++++..
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 7888888754
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.4e-38 Score=342.41 Aligned_cols=319 Identities=18% Similarity=0.178 Sum_probs=200.4
Q ss_pred CCCCHHHHHHHHhHhC----C-CCEEEEccCCChhHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEccchhhHHHHH-HH
Q 008430 142 TRPTSIQAQAMPVALS----G-RDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIE-KE 213 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~----g-~~~li~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~P~~~L~~Q~~-~~ 213 (565)
..|+++|.++++.++. + ++++++++||+|||+++ +.++..+.... ......++++|||+|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999998875 4 56899999999999997 55666555432 011124688999999999999999 77
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHH----cCCCCCCCceEEEecchhHhhcCCCHHH
Q 008430 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ----QGNTSLSRVSFVILDEADRMLDMGFEPQ 289 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~----~~~~~~~~~~~iIiDE~H~~~~~~~~~~ 289 (565)
|+.+. ..+..+.++ ....+.+|+|+|+++|..... ...+....+++|||||||++...+ ...
T Consensus 256 ~~~~~-----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 256 FTPFG-----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CTTTC-----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHhcc-----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 77543 233333333 344678999999999987654 223556789999999999987542 245
Q ss_pred HHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCC-----cCCCCCceEEEEE-------------------
Q 008430 290 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK-----VSSPTANVIQILE------------------- 345 (565)
Q Consensus 290 ~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------------------- 345 (565)
+..++..++. .++++|||||..........++..+....... .......+.....
T Consensus 322 ~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 6788888864 56999999997554444444444332211000 0000000000000
Q ss_pred -------Eec-------cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCc--------eeE
Q 008430 346 -------KVS-------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH--------AVA 403 (565)
Q Consensus 346 -------~~~-------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~--------~~~ 403 (565)
... ...+...+.+.+...... ..+.+++||||+++.+|+.+++.|.+.+.. +..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~----~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKR----TDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHH----HCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHh----cCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 011122222333222211 134568999999999999999999886543 678
Q ss_pred ecCCCCHHHHHHHHHHhhcCCce---EEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCC--ceeEEEEe
Q 008430 404 LHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS--MGQATSFY 478 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 478 (565)
+||.++. +|++++++|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+||+||+||.+. .+..++++
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 8998753 799999999998866 88999999999999999999999999999999999999999875 34444444
Q ss_pred ccc
Q 008430 479 TDR 481 (565)
Q Consensus 479 ~~~ 481 (565)
+--
T Consensus 556 D~~ 558 (590)
T 3h1t_A 556 DYT 558 (590)
T ss_dssp ECS
T ss_pred ecC
Confidence 433
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.8e-39 Score=337.45 Aligned_cols=289 Identities=22% Similarity=0.247 Sum_probs=216.0
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..++++|+++++.+..+++++++||||+|||++|.+++++. +.++||++|+++|+.|+++.+.+.++
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~g-- 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHG-- 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHHS--
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHhC--
Confidence 35667777777788788899999999999999988877652 56799999999999999998887763
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCC
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
..+...+|+.. ...+++|+|+||++| +....+.++++++|||||||+ .+.++...+..++..++...
T Consensus 283 --~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 283 --IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp --CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT
T ss_pred --CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC
Confidence 44566677643 456799999999998 355567788899999999975 45556677888888887666
Q ss_pred c--EEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 008430 302 Q--TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 302 ~--~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~li 379 (565)
+ ++++|||++..+. ...+......... ...+ ........ ......+++||
T Consensus 350 ~~llil~SAT~~~~i~------~~~p~i~~v~~~~--~~~i----~~~~~~~~----------------l~~~~~~~vLV 401 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT------VPHPNIEEVALSN--TGEI----PFYGKAIP----------------IEAIRGGRHLI 401 (666)
T ss_dssp CSEEEEEESSCTTCCC------CCCTTEEEEECBS--CSSE----EETTEEEC----------------GGGSSSSEEEE
T ss_pred CceEEEECCCCCcccc------cCCcceEEEeecc--cchh----HHHHhhhh----------------hhhccCCcEEE
Confidence 6 7888999986311 1111111110000 0000 00000000 00113457999
Q ss_pred EecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEE----------Ec
Q 008430 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----------NL 449 (565)
Q Consensus 380 F~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----------~~ 449 (565)
||++++.++.+++.|.+.++.+..+||++++++ |.++..+|||||+++++|||+| +++|| +|
T Consensus 402 Fv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNy 473 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDF 473 (666)
T ss_dssp ECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEEC
T ss_pred EeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccc
Confidence 999999999999999999999999999999875 4566679999999999999997 99998 56
Q ss_pred C-----------CCCCcccceecccccccCCCceeEEEEeccccHHH--H--HHHHHHHH
Q 008430 450 D-----------LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL--V--AQIKKAIV 494 (565)
Q Consensus 450 ~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~--~--~~l~~~~~ 494 (565)
| .|.+...|+||+||+|| |+.|. +.|+.+.+... + ..+++...
T Consensus 474 DydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 474 SLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred ccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 6 78999999999999999 88999 89998876544 2 44544443
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.4e-39 Score=335.46 Aligned_cols=278 Identities=17% Similarity=0.234 Sum_probs=190.5
Q ss_pred hHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCC
Q 008430 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (565)
Q Consensus 154 ~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~ 233 (565)
.+++|+++++++|||||||++|++|++..+.. +++++||++||++|+.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccc
Confidence 45688999999999999999999999987765 3678999999999999999887743 222222211
Q ss_pred CHHHHHHHHhCCCcEEEEccHHH---------HHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CCCCcE
Q 008430 234 NIAEQRSELRGGVSIVVATPGRF---------LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQT 303 (565)
Q Consensus 234 ~~~~~~~~~~~~~~ilv~T~~~l---------~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~ 303 (565)
. .++||+.+ ... ......+.++++|||||+|++ +.++...+..+.... +.+.|+
T Consensus 70 ~--------------~v~Tp~~l~~~l~~~~l~~~-~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 133 (440)
T 1yks_A 70 S--------------AHGSGREVIDAMCHATLTYR-MLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESAT 133 (440)
T ss_dssp C--------------CCCCSSCCEEEEEHHHHHHH-HTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred e--------------eccCCccceeeecccchhHh-hhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceE
Confidence 0 25555433 222 223345788999999999997 222222222222111 356899
Q ss_pred EEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecc
Q 008430 304 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 304 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s 383 (565)
++||||++.....+... ..+. ......+.... ...++..+.+ ..+++||||++
T Consensus 134 l~~SAT~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~-~~~~~~~l~~----------~~~~~lVF~~s 186 (440)
T 1yks_A 134 ILMTATPPGTSDEFPHS--NGEI--------------EDVQTDIPSEP-WNTGHDWILA----------DKRPTAWFLPS 186 (440)
T ss_dssp EEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCSSC-CSSSCHHHHH----------CCSCEEEECSC
T ss_pred EEEeCCCCchhhhhhhc--CCCe--------------eEeeeccChHH-HHHHHHHHHh----------cCCCEEEEeCC
Confidence 99999997653321110 0111 11111111111 1111222221 13469999999
Q ss_pred cchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE---------------
Q 008430 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--------------- 448 (565)
Q Consensus 384 ~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~--------------- 448 (565)
++.|+.+++.|.+.++.+..+|| ++|.++++.|++|+++|||||+++++|||+| +++||+
T Consensus 187 ~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~ 261 (440)
T 1yks_A 187 IRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRK 261 (440)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccc
Confidence 99999999999999999999999 4688999999999999999999999999999 999986
Q ss_pred ----cCCCCCcccceecccccccC-CCceeEEEEe---ccccHHHHHHHHHHH
Q 008430 449 ----LDLPKTVEDYVHRIGRTGRG-GSMGQATSFY---TDRDMLLVAQIKKAI 493 (565)
Q Consensus 449 ----~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~~ 493 (565)
++.|.+...|+||+||+||. |+.|.|++++ ++.+...+..++..+
T Consensus 262 ~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 262 VAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88899999999999999997 6899999996 567777777776654
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3e-38 Score=338.53 Aligned_cols=298 Identities=17% Similarity=0.258 Sum_probs=208.8
Q ss_pred CCCHHHH-----HHHHhHh------CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 143 RPTSIQA-----QAMPVAL------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 143 ~~~~~Q~-----~~l~~l~------~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
.|+++|+ ++++.++ .++++|+++|||+|||++|+++++..+.. +++++||++||++|+.|++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEccHHHHHHHHH
Confidence 8999999 9999888 89999999999999999999999988765 3678999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHH
Q 008430 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR 291 (565)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 291 (565)
+.++.+ .+ ....+... .....+.-+-+.+.+.+.+.+... ..+.++++|||||+|++. ..+...+.
T Consensus 288 ~~l~~~-----~i--~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~-~~~~~~~~ 353 (673)
T 2wv9_A 288 EALRGL-----PV--RYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTD-PASIAARG 353 (673)
T ss_dssp HHTTTS-----CC--EECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCC-HHHHHHHH
T ss_pred HHHhcC-----Ce--eeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccC-ccHHHHHH
Confidence 888754 11 11111100 000111234455556665555543 567899999999999871 11112222
Q ss_pred HHHHhC-CCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhc
Q 008430 292 EVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKS 370 (565)
Q Consensus 292 ~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 370 (565)
.+.... +...|+++||||++..+..+. .. ...+......+.... ...++..+.+
T Consensus 354 ~l~~~~~~~~~~vl~~SAT~~~~i~~~~----~~------------~~~i~~v~~~~~~~~-~~~~l~~l~~-------- 408 (673)
T 2wv9_A 354 YIATRVEAGEAAAIFMTATPPGTSDPFP----DT------------NSPVHDVSSEIPDRA-WSSGFEWITD-------- 408 (673)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCCCSSC----CC------------SSCEEEEECCCCSSC-CSSCCHHHHS--------
T ss_pred HHHHhccccCCcEEEEcCCCChhhhhhc----cc------------CCceEEEeeecCHHH-HHHHHHHHHh--------
Confidence 222222 256899999999975532111 00 011111111111111 1111122211
Q ss_pred CCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE--
Q 008430 371 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-- 448 (565)
Q Consensus 371 ~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~-- 448 (565)
..+++||||+++++++.+++.|.+.++.+..+||+ +|.++++.|++|+++|||||+++++|||+| +++||+
T Consensus 409 --~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 --YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 23469999999999999999999999999999993 799999999999999999999999999999 999998
Q ss_pred ------------------cCCCCCcccceecccccccC-CCceeEEEEe---ccccHHHHHHHHHHH
Q 008430 449 ------------------LDLPKTVEDYVHRIGRTGRG-GSMGQATSFY---TDRDMLLVAQIKKAI 493 (565)
Q Consensus 449 ------------------~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~~ 493 (565)
++.|.+...|+||+||+||. |+.|.+++|+ ++.|...+..++..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 56888999999999999998 7899999996 566766666665544
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.3e-37 Score=322.98 Aligned_cols=278 Identities=17% Similarity=0.252 Sum_probs=194.1
Q ss_pred HHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceE
Q 008430 147 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 147 ~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
+|......+..++++++++|||+|||++|++|++..+.. .++++||++|+++|+.|+++.++. ..+
T Consensus 10 ~~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g-------~~v 75 (459)
T 2z83_A 10 MGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRG-------LPV 75 (459)
T ss_dssp -----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTT-------SCE
T ss_pred HHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcC-------ceE
Confidence 444444556678899999999999999999999988775 367899999999999999988762 222
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH-----hhcCCCHHHHHHHHHhCCCCC
Q 008430 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-----MLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~-----~~~~~~~~~~~~i~~~~~~~~ 301 (565)
....+.... ....+..+.++|.+.+...+... ..+.++++|||||||+ +...++. ..+. . .+..
T Consensus 76 ~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~---~~~~-~-~~~~ 144 (459)
T 2z83_A 76 RYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYI---ATKV-E-LGEA 144 (459)
T ss_dssp EECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHH---HHHH-H-TTSC
T ss_pred eEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHH---HHHh-c-cCCc
Confidence 222111110 01233557788988887766653 5578899999999997 3322221 1111 1 2578
Q ss_pred cEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEe
Q 008430 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~ 381 (565)
|+++||||++..+..+.. ...|+..... .+.. .....+...+.+ ..+++||||
T Consensus 145 ~~il~SAT~~~~~~~~~~--~~~pi~~~~~--------------~~~~-~~~~~~~~~l~~----------~~~~~LVF~ 197 (459)
T 2z83_A 145 AAIFMTATPPGTTDPFPD--SNAPIHDLQD--------------EIPD-RAWSSGYEWITE----------YAGKTVWFV 197 (459)
T ss_dssp EEEEECSSCTTCCCSSCC--CSSCEEEEEC--------------CCCS-SCCSSCCHHHHH----------CCSCEEEEC
T ss_pred cEEEEEcCCCcchhhhcc--CCCCeEEecc--------------cCCc-chhHHHHHHHHh----------cCCCEEEEe
Confidence 999999999865321111 0112211110 0000 000011111211 134699999
Q ss_pred cccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEE-------------
Q 008430 382 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN------------- 448 (565)
Q Consensus 382 ~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~------------- 448 (565)
++++.|+.+++.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 198 ~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~ 272 (459)
T 2z83_A 198 ASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEG 272 (459)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSS
T ss_pred CChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccc
Confidence 99999999999999999999999985 6888999999999999999999999999999 99999
Q ss_pred -------cCCCCCcccceecccccccCCC-ceeEEEEeccc
Q 008430 449 -------LDLPKTVEDYVHRIGRTGRGGS-MGQATSFYTDR 481 (565)
Q Consensus 449 -------~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~~ 481 (565)
++.|.|...|+||+||+||.|. .|.+++++...
T Consensus 273 ~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 273 EGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6799999999999999999997 89999999875
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.2e-36 Score=341.32 Aligned_cols=333 Identities=18% Similarity=0.162 Sum_probs=223.4
Q ss_pred CCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.+|+|+|.+++..++.. .++|++++||+|||++++..+... .... ...++|||||+ .|+.||..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l-~~~g-----~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQ-LLSG-----AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHH-HHTS-----SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH-HHhC-----CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999988764 479999999999999985555444 3321 24579999999 99999999998876
Q ss_pred cCCCceEEEEECCCCHHHHHH--HHhCCCcEEEEccHHHHHHHHc-CCCCCCCceEEEecchhHhhcCCCH--HHHHHHH
Q 008430 220 SLDSFKTAIVVGGTNIAEQRS--ELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFE--PQIREVM 294 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~ilv~T~~~l~~~l~~-~~~~~~~~~~iIiDE~H~~~~~~~~--~~~~~i~ 294 (565)
++.+..+.++........ ......+|+|+|++.+...... ..+...++++|||||||++.+.+.. ..+..+.
T Consensus 224 ---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 ---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 344555444322111110 1123578999999998532111 1123447999999999999754421 2233333
Q ss_pred HhCCCCCcEEEEEeecChH----HHHHHH----------------------------HHcCC-C----------------
Q 008430 295 QNLPDKHQTLLFSATMPVE----IEALAQ----------------------------EYLTD-P---------------- 325 (565)
Q Consensus 295 ~~~~~~~~~l~~SAT~~~~----~~~~~~----------------------------~~~~~-~---------------- 325 (565)
.......+++++||||... +...+. .+... +
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 2222344699999999421 111000 00000 0
Q ss_pred -----------------------------------eEEEeCCc---CCCCCceEEEEE----------------------
Q 008430 326 -----------------------------------VQVKVGKV---SSPTANVIQILE---------------------- 345 (565)
Q Consensus 326 -----------------------------------~~~~~~~~---~~~~~~~~~~~~---------------------- 345 (565)
..+..... ..+.........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000 000000000000
Q ss_pred -----------------------EeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHH-cCCce
Q 008430 346 -----------------------KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-EGLHA 401 (565)
Q Consensus 346 -----------------------~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~-~~~~~ 401 (565)
......|...+...+.. .++.++||||+++.+++.+++.|.+ .|+++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---------~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---------HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---------TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---------CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 11122344444444433 2345799999999999999999995 59999
Q ss_pred eEecCCCCHHHHHHHHHHhhcCC--ceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec
Q 008430 402 VALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
..+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|+|++||+||.|+.|.+++++.
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999998777765
Q ss_pred cccHHHHHHHHHHHH
Q 008430 480 DRDMLLVAQIKKAIV 494 (565)
Q Consensus 480 ~~~~~~~~~l~~~~~ 494 (565)
..+......+.+.+.
T Consensus 612 ~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 612 YLEKTAQSVLVRWYH 626 (968)
T ss_dssp EETTSHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHH
Confidence 554444455555543
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.6e-35 Score=312.67 Aligned_cols=308 Identities=14% Similarity=0.178 Sum_probs=212.9
Q ss_pred CCCCHHHHHHHHhHh----CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~----~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+|+|.++++.+. .++++|++++||+|||+++ +.++..+.... ...++||||| ..|+.||.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~-----~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKEN-----ELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTT-----CCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcC-----CCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 379999999998873 5778999999999999997 55555555431 3467999999 56999999999998
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~ 297 (565)
+. ...+..+.|+... ....+++|+|+|++++..... +....+++||+||||++.+.+. ...+.+..+
T Consensus 109 ~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l 175 (500)
T 1z63_A 109 AP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL 175 (500)
T ss_dssp CT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS
T ss_pred CC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh
Confidence 74 4566666665421 122458999999999965433 2334689999999999976542 234455555
Q ss_pred CCCCcEEEEEeecChH-HHH---H---------------------------------HHHHcCCCeEEEeCCcC----CC
Q 008430 298 PDKHQTLLFSATMPVE-IEA---L---------------------------------AQEYLTDPVQVKVGKVS----SP 336 (565)
Q Consensus 298 ~~~~~~l~~SAT~~~~-~~~---~---------------------------------~~~~~~~~~~~~~~~~~----~~ 336 (565)
+. .+.+++||||..+ +.+ . +...+ .++.+...... ..
T Consensus 176 ~~-~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 176 KS-KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIIND 253 (500)
T ss_dssp CE-EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTT
T ss_pred cc-CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhc
Confidence 43 4589999999432 111 1 11111 12222211100 01
Q ss_pred CCceEEEEEEeccch---------------------------------------------------------HHHHHHHH
Q 008430 337 TANVIQILEKVSENE---------------------------------------------------------KVDRLLAL 359 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~---------------------------------------------------------k~~~l~~~ 359 (565)
.+........+.... |...+.+.
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 111122222222111 11111122
Q ss_pred HHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-CCceeEecCCCCHHHHHHHHHHhhcC-Cce-EEEEcCcccC
Q 008430 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-STN-ILVATDVASR 436 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLv~T~~~~~ 436 (565)
+.+. ...+.++||||+++..++.+++.|... |+.+..+||+++..+|.+++++|++| +.+ +|++|+++++
T Consensus 334 l~~~-------~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 334 IEEA-------LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHH-------HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHH-------HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 2111 123457999999999999999999986 99999999999999999999999998 565 7899999999
Q ss_pred CCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEe
Q 008430 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 478 (565)
|+|+|.+++||++|+|+++..|.|++||++|.|+.+.+.++.
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~ 448 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEE
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEE
Confidence 999999999999999999999999999999999987765443
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2e-36 Score=311.49 Aligned_cols=269 Identities=17% Similarity=0.213 Sum_probs=188.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+|+++|+++|||+|||++|+++++..+.. +++++||++||++|+.|+.+.++ +..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc-
Confidence 36889999999999999999999977665 36789999999999999887765 3445555554221
Q ss_pred HHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHh-CCCCCcEEEEEeecChHHH
Q 008430 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 237 ~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~ 315 (565)
.-..+..+.+.|.+.+.+.+.. ...+.++++|||||+|++ +.++......+... .++..|+++|||||+..+.
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 1122455777888888776665 456888999999999987 22222222223222 1457899999999986422
Q ss_pred HHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHH
Q 008430 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (565)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~ 395 (565)
.+. . ....+......+.. .+...++..+.+ ..+++||||+++++++.+++.|.
T Consensus 140 ~~~----~------------~~~~i~~~~~~~~~-~~~~~~~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 140 AFP----P------------SNSPIIDEETRIPD-KAWNSGYEWITE----------FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp SSC----C------------CSSCCEEEECCCCS-SCCSSCCHHHHS----------CSSCEEEECSSHHHHHHHHHHHH
T ss_pred hhc----C------------CCCceeeccccCCH-HHHHHHHHHHHc----------CCCCEEEEeCCHHHHHHHHHHHH
Confidence 110 0 00011111001111 111111222211 13469999999999999999999
Q ss_pred HcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccE-----------------EEEcCCCCCcccc
Q 008430 396 AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAH-----------------VVNLDLPKTVEDY 458 (565)
Q Consensus 396 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~-----------------Vi~~~~~~s~~~~ 458 (565)
+.++.+..+||+ +|.++++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+...|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 999999999997 588899999999999999999999999999 655 5678888899999
Q ss_pred eecccccccCCC-ceeEEEEe
Q 008430 459 VHRIGRTGRGGS-MGQATSFY 478 (565)
Q Consensus 459 ~Q~~GR~~R~g~-~g~~~~~~ 478 (565)
+||+||+||.|. .|.++++.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999985 45556555
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=275.20 Aligned_cols=216 Identities=38% Similarity=0.599 Sum_probs=186.2
Q ss_pred CCCCCCCccCCccc-CCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCC-C
Q 008430 112 GSVPAPAPIESFTD-MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-V 189 (565)
Q Consensus 112 ~~~~~~~~~~~f~~-~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~-~ 189 (565)
.....|.+..+|++ +++++.+++++...|+.+|+++|.++++.+++|+++++++|||+|||++|++|++..+..... .
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34567899999999 799999999999999999999999999999999999999999999999999999987754321 1
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 190 GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 190 ~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
....++++||++|+++|+.|+.+.++++.. .++.+..++|+.........+..+++|+|+||++|.+.+......+.+
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCccc
Confidence 123578899999999999999999999863 367888899988877777777788999999999999999888888899
Q ss_pred ceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEE
Q 008430 270 VSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (565)
+++|||||||++.+.+|...+..++..++++.|++++|||++..+..++..++.+|..+.
T Consensus 168 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 168 ITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999999887764
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5e-34 Score=264.66 Aligned_cols=203 Identities=34% Similarity=0.640 Sum_probs=185.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
.+|+++++++.+++.+...|+.+|+++|.++++.+++|+++++.+|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999998875432 246789999
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhH
Q 008430 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|+.+.++++....++..+..+.|+.........+..+++|+|+||++|.+.+......+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 99999999999999999876656889999999988877777778899999999999999988878888999999999999
Q ss_pred hhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEE
Q 008430 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 328 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 328 (565)
+.+.++...+..++..+++..|++++|||++..+...+..++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998889999999999999999999999988765
No 57
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-34 Score=276.07 Aligned_cols=223 Identities=44% Similarity=0.743 Sum_probs=189.5
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCC----CCCC
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----GRGD 193 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~----~~~~ 193 (565)
.++.+|+++++++.+.++|...|+.+|+++|.++++.++.|+++++++|||+|||++|++|++..+...... ....
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 378899999999999999999999999999999999999999999999999999999999999887754211 1223
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEE
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~i 273 (565)
++++|||+|+++|+.|+.+.++++.... ++.+..+.|+.........+..+++|+|+||++|.+.+......+.++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEE
Confidence 5789999999999999999999987654 578888999988877777777889999999999999998888888999999
Q ss_pred EecchhHhhcCCCHHHHHHHHHhC--CC--CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceE
Q 008430 274 ILDEADRMLDMGFEPQIREVMQNL--PD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI 341 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (565)
||||||++.+.+|...+..++..+ +. ..|++++|||++..+..++..++.+|..+.+........++.
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 999999999999999999999854 33 678999999999999999999999999888776544444443
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.1e-34 Score=270.50 Aligned_cols=210 Identities=29% Similarity=0.512 Sum_probs=183.7
Q ss_pred CCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 008430 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 115 ~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 194 (565)
..|.+..+|+++++++.+.+.+...|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~ 92 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NLS 92 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 346677889999999999999999999999999999999999999999999999999999999998876542 246
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEE
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iI 274 (565)
+++||++|+++|+.|+.+.++++.....++.+..+.|+.....+...+ .+++|+|+||++|.+.+....+.+.++++||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 789999999999999999999997665578899999998877665554 4799999999999999988778888999999
Q ss_pred ecchhHhhcCC-CHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEe
Q 008430 275 LDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (565)
Q Consensus 275 iDE~H~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
|||||++.+.+ |...+..++..++...|++++|||++..+...+..++.+|..+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999987 999999999999988999999999999999999999988877643
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=270.84 Aligned_cols=208 Identities=38% Similarity=0.681 Sum_probs=189.0
Q ss_pred CCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 196 (565)
+.+..+|+++++++.+.+.+...|+..|+++|.++++.+++|+++++++|||+|||++|+++++..+.... .+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCce
Confidence 34567899999999999999999999999999999999999999999999999999999999998877642 3667
Q ss_pred EEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-CCCCCCCceEEEe
Q 008430 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVIL 275 (565)
Q Consensus 197 ~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-~~~~~~~~~~iIi 275 (565)
+||++|+++|+.|+.+.++++.... ++.+..++|+.....+...+..+++|+|+||++|.+.+.. ..+.+.++++|||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 9999999999999999999998764 5788999999988777777778899999999999998876 4567889999999
Q ss_pred cchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEe
Q 008430 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
||||++.+.+|...+..++..+++..|+++||||++..+..++..++.+|..+.+
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999989999999999999999999999999987754
No 60
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-34 Score=316.06 Aligned_cols=370 Identities=16% Similarity=0.219 Sum_probs=245.3
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHh---
Q 008430 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--- 156 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~--- 156 (565)
..|..........++.++.+..+.+....... ....+.....|..+...|... .-.+|+|||.+++..+.
T Consensus 180 ~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~~ 252 (800)
T 3mwy_W 180 ATWENATDIVKLAPEQVKHFQNRENSKILPQY-SSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFLW 252 (800)
T ss_dssp CBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTT-CCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhcccCCcc-hhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHHh
Confidence 45766556666778888888876543221111 111122223454444333221 12479999999998776
Q ss_pred -CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 008430 157 -SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 157 -~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (565)
.++++|++.+||+|||++++. ++..+.... .....+||||| ..|+.||.++|.+++. .+.+..+.|+...
T Consensus 253 ~~~~~~ILademGlGKT~~ai~-~i~~l~~~~----~~~~~~LIV~P-~sll~qW~~E~~~~~p---~~~v~~~~g~~~~ 323 (800)
T 3mwy_W 253 SKGDNGILADEMGLGKTVQTVA-FISWLIFAR----RQNGPHIIVVP-LSTMPAWLDTFEKWAP---DLNCICYMGNQKS 323 (800)
T ss_dssp TTTCCEEECCCTTSSTTHHHHH-HHHHHHHHH----SCCSCEEEECC-TTTHHHHHHHHHHHST---TCCEEECCCSSHH
T ss_pred hcCCCEEEEeCCCcchHHHHHH-HHHHHHHhc----CCCCCEEEEEC-chHHHHHHHHHHHHCC---CceEEEEeCCHHH
Confidence 788999999999999998744 444443221 12455899999 6899999999999974 5677777777655
Q ss_pred HHHHHH------------HhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcE
Q 008430 236 AEQRSE------------LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQT 303 (565)
Q Consensus 236 ~~~~~~------------~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~ 303 (565)
...... ....++|+|+|++++...... +....+++|||||||++.+.. ....+.+..+... ..
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~~~-~r 398 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFKVA-NR 398 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSEEE-EE
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHhhhc-cE
Confidence 443322 124578999999999754332 223368999999999997543 2345555556443 47
Q ss_pred EEEEeecC----hHHHHHHHHHcC-----------------------------CCeEEEeCCcC--CCCCceEEEEEEec
Q 008430 304 LLFSATMP----VEIEALAQEYLT-----------------------------DPVQVKVGKVS--SPTANVIQILEKVS 348 (565)
Q Consensus 304 l~~SAT~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~ 348 (565)
+++||||- .++..++.-+.. .++.+...... ...+........+.
T Consensus 399 l~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ 478 (800)
T 3mwy_W 399 MLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVE 478 (800)
T ss_dssp EEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEEC
T ss_pred EEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeC
Confidence 89999992 222222221111 11111111000 00111111111211
Q ss_pred cc---------------------------------------------------------------------------hHH
Q 008430 349 EN---------------------------------------------------------------------------EKV 353 (565)
Q Consensus 349 ~~---------------------------------------------------------------------------~k~ 353 (565)
.. .|.
T Consensus 479 ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~ 558 (800)
T 3mwy_W 479 LSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKM 558 (800)
T ss_dssp CCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHH
Confidence 11 111
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCc---eEEEE
Q 008430 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST---NILVA 430 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vLv~ 430 (565)
..+..++... ...+.++||||+....++.|.+.|...|+.+..+||+++..+|.++++.|+++.. .+|++
T Consensus 559 ~~L~~lL~~~-------~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 559 VLLDQLLTRL-------KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHHHHHHHHH-------TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred HHHHHHHHHH-------hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 1111111111 1245679999999999999999999999999999999999999999999998654 49999
Q ss_pred cCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEE
Q 008430 431 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 477 (565)
|.++++|||++.+++||++|+++|+..++|++||++|.|+...|.++
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999999987666544
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-33 Score=300.35 Aligned_cols=326 Identities=16% Similarity=0.168 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHhHh---------CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHH
Q 008430 143 RPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~---------~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
.|+|||.+++..+. .++++|++.+||+|||+++ +.++..+....+...+...++|||+|+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~-i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQC-ITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHH-HHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHH-HHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 3456999999999999997 445555555433223334579999996 899999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHH--HHH-h-----CCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCC
Q 008430 214 VKALSRSLDSFKTAIVVGGTNIAEQR--SEL-R-----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~-----~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+.++++. .+.+..+.++....... ... . ...+|+|+|++.+.... ..+....+++||+||||++.+..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 9999864 35556666664332111 111 1 14789999999997543 23445579999999999987653
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeecChHH----HH---------------HHHHH-------------------------
Q 008430 286 FEPQIREVMQNLPDKHQTLLFSATMPVEI----EA---------------LAQEY------------------------- 321 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~----~~---------------~~~~~------------------------- 321 (565)
...+.. +..+.. ...+++||||-.+. .. +...|
T Consensus 209 -~~~~~a-l~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 -NQTYLA-LNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp -HHHHHH-HHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred -hHHHHH-HHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 233333 334443 45899999993221 00 00000
Q ss_pred ----cCCCeEEEeCCc--CCCCCceEEEEEEeccchHHHHHHH--------------------------HHHHHHH----
Q 008430 322 ----LTDPVQVKVGKV--SSPTANVIQILEKVSENEKVDRLLA--------------------------LLVEEAF---- 365 (565)
Q Consensus 322 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~l~~--------------------------~l~~~~~---- 365 (565)
+..++.+.-... ....+........+........+.+ .+.+...
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 000111110000 0001111111122111110000000 0000000
Q ss_pred ------------------------------------------hhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeE
Q 008430 366 ------------------------------------------LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVA 403 (565)
Q Consensus 366 ------------------------------------------~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~ 403 (565)
........+.++||||+....++.+.+.|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00000013468999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCc---eEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEE
Q 008430 404 LHGGRNQSDRESALRDFRNGST---NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~---~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 477 (565)
+||+++..+|.+++++|++|+. .+|++|+++++|+|++.+++||++|+||++..+.|++||++|.|+.+.|.++
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999999875 4899999999999999999999999999999999999999999987665544
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.5e-34 Score=308.77 Aligned_cols=276 Identities=20% Similarity=0.204 Sum_probs=204.6
Q ss_pred HHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEEC
Q 008430 152 MPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVG 231 (565)
Q Consensus 152 l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g 231 (565)
....++|++++++||||+|||+.+ +..+.. .+..+|++|+++|+.|+++.+++. ++.+..++|
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG 211 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHA----IQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTG 211 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHH----HHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEEC
Confidence 344567889999999999999833 333333 233699999999999999999875 567888888
Q ss_pred CCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC-CCCcEEEEEeec
Q 008430 232 GTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATM 310 (565)
Q Consensus 232 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~ 310 (565)
+...... .-....+++++|++.+. ....+++|||||+|++.+.+++..+..++..++ ...+++++|||.
T Consensus 212 ~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 212 EERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp SCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred CeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH
Confidence 8643100 00113678899987653 245689999999999999999999999988887 678899999995
Q ss_pred ChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHH
Q 008430 311 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEV 390 (565)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l 390 (565)
+ .+..+.. .......+...... .... . ....-.. +. . .....+|||++++.++.+
T Consensus 282 ~-~i~~l~~-~~~~~~~v~~~~r~---~~l~--~-~~~~l~~-------l~--------~--~~~g~iIf~~s~~~ie~l 336 (677)
T 3rc3_A 282 D-LVMELMY-TTGEEVEVRDYKRL---TPIS--V-LDHALES-------LD--------N--LRPGDCIVCFSKNDIYSV 336 (677)
T ss_dssp H-HHHHHHH-HHTCCEEEEECCCS---SCEE--E-CSSCCCS-------GG--------G--CCTTEEEECSSHHHHHHH
T ss_pred H-HHHHHHH-hcCCceEEEEeeec---chHH--H-HHHHHHH-------HH--------h--cCCCCEEEEcCHHHHHHH
Confidence 2 2333333 33344443222110 0000 0 0000000 00 0 011368999999999999
Q ss_pred HHHHHHcCCceeEecCCCCHHHHHHHHHHhhc--CCceEEEEcCcccCCCCccCccEEEEcCC--------------CCC
Q 008430 391 SEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDL--------------PKT 454 (565)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~v~~Vi~~~~--------------~~s 454 (565)
++.|.+.++.+..+||++++++|..+++.|++ |+++|||||+++++|||+ ++++||+++. |.+
T Consensus 337 a~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s 415 (677)
T 3rc3_A 337 SRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPIT 415 (677)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCC
T ss_pred HHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCC
Confidence 99999999999999999999999999999999 889999999999999999 8999999998 778
Q ss_pred cccceecccccccCCCc---eeEEEEecc
Q 008430 455 VEDYVHRIGRTGRGGSM---GQATSFYTD 480 (565)
Q Consensus 455 ~~~~~Q~~GR~~R~g~~---g~~~~~~~~ 480 (565)
...|+||+|||||.|.. |.|+.++..
T Consensus 416 ~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 416 TSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp HHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred HHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 99999999999999964 666655543
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-34 Score=268.55 Aligned_cols=208 Identities=31% Similarity=0.548 Sum_probs=183.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 199 (565)
..+|+++++++.+.+++...|+.+|+++|.++++.+++|+++++++|||+|||++|+++++..+... ..++++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 3579999999999999999999999999999999999999999999999999999999998876432 24678999
Q ss_pred EccchhhHHHHHHHHHHHhhcCC---CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEec
Q 008430 200 LAPTRELAQQIEKEVKALSRSLD---SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiD 276 (565)
++|+++|+.|+.+.++++..... ++.+..++|+.........+..+++|+|+||++|.+.+......+.++++||||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999999986542 467888888876655444445678999999999999998877888899999999
Q ss_pred chhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeCC
Q 008430 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 332 (565)
|||++.+.++...+..++..+++..|++++|||++.++..++..++.+|..+....
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999988899999999999999999999999998876553
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.4e-34 Score=270.07 Aligned_cols=211 Identities=36% Similarity=0.579 Sum_probs=176.4
Q ss_pred CCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 008430 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 115 ~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 194 (565)
..|.++.+|+++++++.+++++...||..|+++|.++++.+++|+++++++|||+|||++|+++++..+... ..+
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~ 98 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKE 98 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 346678899999999999999999999999999999999999999999999999999999999998875432 246
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCC-CcEEEEccHHHHHHHHcCCCCCCCceEE
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~ilv~T~~~l~~~l~~~~~~~~~~~~i 273 (565)
+++||++|+++|+.|+.+.++++.... +..+..+.|+.........+..+ ++|+|+||++|.+.+......+.++++|
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 789999999999999999999987654 57788888887766555455444 8999999999999998887888899999
Q ss_pred EecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeC
Q 008430 274 ILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
||||||++.+.++...+..++..++...|++++|||++..+..++..++.+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999899999999999999999999999998877543
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=263.93 Aligned_cols=227 Identities=35% Similarity=0.570 Sum_probs=192.5
Q ss_pred HHHHHHHHHHcCceEEecCCCCCCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhH
Q 008430 93 PEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKT 172 (565)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT 172 (565)
.++++.++..+.. ..+.++.+|+++++++.+++.|...|+..|+++|.++++.++.|+++++++|||+|||
T Consensus 6 ~~~~~~~~~~~~~---------~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT 76 (236)
T 2pl3_A 6 RESISRLMQNYEK---------INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKT 76 (236)
T ss_dssp HHHHHHHHHTTTT---------CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHH
T ss_pred HhHHHHHHhcccc---------CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHH
Confidence 4456666665442 2256678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEc
Q 008430 173 AAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 252 (565)
Q Consensus 173 ~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T 252 (565)
++|++|++..+..... ....++++||++|+++|+.|+.+.++++.... ++.+..++|+.........+ .+++|+|+|
T Consensus 77 ~~~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~T 153 (236)
T 2pl3_A 77 LAFLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCT 153 (236)
T ss_dssp HHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEEC
Confidence 9999999988765321 11247789999999999999999999987654 57888888987766555444 579999999
Q ss_pred cHHHHHHHHcC-CCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeC
Q 008430 253 PGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (565)
Q Consensus 253 ~~~l~~~l~~~-~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
|++|.+.+... .+.+.++++|||||||++.+.+|...+..++..+++..|++++|||++..+..+...++.+|..+.+.
T Consensus 154 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 154 PGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999888765 46778899999999999999999999999999999899999999999999999999999999887654
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2e-33 Score=264.17 Aligned_cols=210 Identities=36% Similarity=0.584 Sum_probs=179.8
Q ss_pred CCCCccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q 008430 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 115 ~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 194 (565)
..+.++.+|+++++++.+++.+...|+..|+++|.++++.+++|+++++++|||+|||++|+++++..+... ..+
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~ 82 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 82 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCC
Confidence 446778899999999999999999999999999999999999999999999999999999999998876432 246
Q ss_pred CeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEE
Q 008430 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (565)
Q Consensus 195 ~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iI 274 (565)
+++||++|+++|+.|+.+.++++.... ++.+..+.|+.........+. .++|+|+||++|.+.+......+.++++||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 789999999999999999999987654 678888888877655544443 489999999999999988888888999999
Q ss_pred ecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeC
Q 008430 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
|||||++.+.++...+..++..+++..|++++|||++..+...+..++.+|..+.+.
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999899999999999999999999999999887654
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.1e-32 Score=281.33 Aligned_cols=319 Identities=19% Similarity=0.228 Sum_probs=237.7
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
-.|+++|..+.-.+..|+ |..+.||+|||+++.+|++...+. |..+.||+|+..||.|-++++..++..+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 379999999999998887 999999999999999999866654 6679999999999999999999999887
Q ss_pred CCceEEEEECC--------------------------------------------------CCHHHHHHHHhCCCcEEEE
Q 008430 222 DSFKTAIVVGG--------------------------------------------------TNIAEQRSELRGGVSIVVA 251 (565)
Q Consensus 222 ~~~~~~~~~g~--------------------------------------------------~~~~~~~~~~~~~~~ilv~ 251 (565)
++.+++++.. ....+.... ..|||+++
T Consensus 144 -glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYg 220 (822)
T 3jux_A 144 -GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYG 220 (822)
T ss_dssp -TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEE
T ss_pred -CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEc
Confidence 7999988872 112222222 24899999
Q ss_pred ccHHH-HHHHHcC------CCCCCCceEEEecchhHhh-cC------------CCHHHH---HHHHHh------------
Q 008430 252 TPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM------------GFEPQI---REVMQN------------ 296 (565)
Q Consensus 252 T~~~l-~~~l~~~------~~~~~~~~~iIiDE~H~~~-~~------------~~~~~~---~~i~~~------------ 296 (565)
|...| +++|..+ ......+.+.||||+|.++ +. .-...| ..+...
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99988 5666543 2234568999999999654 10 001111 111000
Q ss_pred --------------------------------------------CCC---------------------------------
Q 008430 297 --------------------------------------------LPD--------------------------------- 299 (565)
Q Consensus 297 --------------------------------------------~~~--------------------------------- 299 (565)
+..
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 000
Q ss_pred ----------------------------CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEE-EEEEeccc
Q 008430 300 ----------------------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ-ILEKVSEN 350 (565)
Q Consensus 300 ----------------------------~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 350 (565)
-.++.|||+|...+...+...|-.. .+.+.. ..+...+.+ ........
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESSHH
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEecHH
Confidence 1168899999988776666555332 233322 222222222 34556777
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEE
Q 008430 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
+|...++..+......+ .|+||||+|++.++.+++.|.+.|+++..+||+..+.++..+...++.| .|+||
T Consensus 458 eK~~al~~~I~~~~~~g-------qpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKG-------QPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp HHHHHHHHHHHHHHHHT-------CCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred HHHHHHHHHHHHHhhCC-------CCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 88888888877654322 2599999999999999999999999999999996665665555666666 59999
Q ss_pred cCcccCCCCcc--------CccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHH
Q 008430 431 TDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 431 T~~~~~Gidip--------~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 485 (565)
|++++||+||+ +..+||+++.|.+...|+||+||+||.|.+|.++.|++.+|...
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 99999999998 66799999999999999999999999999999999999887443
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.1e-33 Score=258.68 Aligned_cols=204 Identities=47% Similarity=0.734 Sum_probs=183.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 122 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
+|+++++++.+.+.+...|+.+|+++|.++++.+++|+++++++|||+|||++|+++++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999988765321 123477899999
Q ss_pred cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh
Q 008430 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+++|+.|+.+.+++++. .+.+..+.|+.....+...+..+++|+|+||+++.+.+......+.++++||+||||++
T Consensus 80 P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh
Confidence 999999999999999875 36788888988877777677778999999999999999888888899999999999999
Q ss_pred hcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEe
Q 008430 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (565)
Q Consensus 282 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
.+.++...+..++..+++..|++++|||++..+..+...++.+|..+.+
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999999989999999999999999999999999987754
No 69
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=275.11 Aligned_cols=206 Identities=31% Similarity=0.500 Sum_probs=182.5
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 195 (565)
....+|+++++++.++++|..+||..|+++|.++++.++.| +++++++|||||||++|++|++..+... ..++
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~ 163 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSC
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCc
Confidence 45789999999999999999999999999999999999987 8999999999999999999999876543 2467
Q ss_pred eEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc-CCCCCCCceEEE
Q 008430 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVI 274 (565)
Q Consensus 196 ~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~-~~~~~~~~~~iI 274 (565)
++|||+|+++|+.|+++.++.+.....++.+..+.|+...... ...+++|+|+||++|.+++.. ..+.+.++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 8999999999999999999999876667888888887654321 245689999999999999866 456788999999
Q ss_pred ecchhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEEeC
Q 008430 275 LDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (565)
Q Consensus 275 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
|||||++.+ .+|...+..++..+++.+|+++||||++..+..++..++.+|..+.+.
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999998 688999999999999999999999999999999999999999888764
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-33 Score=259.79 Aligned_cols=206 Identities=32% Similarity=0.552 Sum_probs=180.5
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 198 (565)
....|+++++++.+++++...|+.+|+++|.++++.+++++++++++|||+|||++|+++++..+... ..++++|
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 86 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVL 86 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999988765332 2356899
Q ss_pred EEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcCCCCCCCceEEEecc
Q 008430 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE 277 (565)
|++|+++|+.|+.+.++++....+++.+..+.|+.....+...+. ..++|+|+||+++.+.+......+.++++|||||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 999999999999999999987655788999999988776665554 4579999999999999988878889999999999
Q ss_pred hhHhhc-CCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCeEEE
Q 008430 278 ADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (565)
Q Consensus 278 ~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (565)
||++.+ .++...+..++..+++..|++++|||++..+..++..++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999986 4677888889998888899999999999999999999999887664
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.3e-33 Score=311.81 Aligned_cols=320 Identities=13% Similarity=0.090 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHhHhC--------------CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhH
Q 008430 142 TRPTSIQAQAMPVALS--------------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~--------------g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~ 207 (565)
..|+++|.+|++.++. +++++++++||||||+++ ++++..+... +...++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 4699999999999875 367999999999999997 6666443321 1346899999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEEccHHHHHHHHcCC--CCCCCceEEEecchhHhhcC
Q 008430 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ilv~T~~~l~~~l~~~~--~~~~~~~~iIiDE~H~~~~~ 284 (565)
.|+.+.|+.+.... +.++.+.......+. .+.+|+|+|+++|...+.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 99999999875421 234444445544553 568999999999998776532 2355789999999999763
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEEeecChHHH----HHHHHHcCC-----------------CeEEEeCCcCCCCC-----
Q 008430 285 GFEPQIREVMQNLPDKHQTLLFSATMPVEIE----ALAQEYLTD-----------------PVQVKVGKVSSPTA----- 338 (565)
Q Consensus 285 ~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~~----- 338 (565)
...+..++..+++ .++++|||||..... .....+++. |+.+..........
T Consensus 416 --~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 --GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp --HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC
T ss_pred --hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc
Confidence 3456777888864 679999999974321 122223333 33221111000000
Q ss_pred -c------eEEEEEEeccchHHHHHHHHHHHHHHhhhhc---CCCCCeEEEEecccchHHHHHHHHHHcC----------
Q 008430 339 -N------VIQILEKVSENEKVDRLLALLVEEAFLAEKS---CHPFPLTIVFVERKTRCDEVSEALVAEG---------- 398 (565)
Q Consensus 339 -~------~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~---~~~~~~~liF~~s~~~a~~l~~~l~~~~---------- 398 (565)
+ +.. ...+....+...+...+.......... ...+.++||||+++.+|..+++.|.+.+
T Consensus 493 ~d~~~~~~i~~-~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 493 TDEKKLSAAEN-QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCHHHHHHTCS-TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred ccHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 000 000011222333333333322111110 1123579999999999999999998764
Q ss_pred --Cce-eEecCC----------C----------CH-----------------------------HHHHHHHHHhhcCCce
Q 008430 399 --LHA-VALHGG----------R----------NQ-----------------------------SDRESALRDFRNGSTN 426 (565)
Q Consensus 399 --~~~-~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~ 426 (565)
+++ +.+|++ + ++ .+|..++++|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 455 445542 1 21 1488899999999999
Q ss_pred EEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCc----eeEEEEecc
Q 008430 427 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM----GQATSFYTD 480 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~~ 480 (565)
|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999999999999999 678899999999999999999998753 777777653
No 72
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=264.08 Aligned_cols=204 Identities=38% Similarity=0.616 Sum_probs=178.2
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008430 121 ESFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 121 ~~f~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 198 (565)
..|.+++ +++.+++.+...|+.+|+++|.++++.++.|+++++++|||+|||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566665 99999999999999999999999999999999999999999999999999999988763211 12477899
Q ss_pred EEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcC-CCCCCCceEEEecc
Q 008430 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDE 277 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~-~~~~~~~~~iIiDE 277 (565)
||+|+++|+.|+++.+++++... +..+..++|+.........+..+++|+|+||++|.+.+... .+.+.++++|||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 99999999999999999998764 67888999999888877777778999999999999888765 46788999999999
Q ss_pred hhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCCCe
Q 008430 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 326 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~ 326 (565)
||++.+++|...+..++..++...|+++||||++..+..+++.++.++.
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred hHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999998887543
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=263.22 Aligned_cols=229 Identities=31% Similarity=0.534 Sum_probs=189.5
Q ss_pred HHHHHHHHcCceEEecCCCCCCCCccCCcccC----CCCHHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCCh
Q 008430 95 QIEEVRLRLNVDVTVASGSVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSG 170 (565)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsG 170 (565)
+++.++...++.+.. ...|.++.+|+++ ++++.+++++...|+..|+++|.++++.+++|+++++.+|||+|
T Consensus 3 ~~~~~~~~~~i~~~~----~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsG 78 (245)
T 3dkp_A 3 KINFLRNKHKIHVQG----TDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSG 78 (245)
T ss_dssp HHHHHHHHTTEEEES----SSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSC
T ss_pred hHHHHHHhCceEecC----CCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCc
Confidence 456777777777653 3568889999987 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH-HHHhCCCcEE
Q 008430 171 KTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-SELRGGVSIV 249 (565)
Q Consensus 171 KT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~il 249 (565)
||++|++|++..+... ...++++||++|+++|+.|+++.+++++... ++.+..+.|+....... .....+++|+
T Consensus 79 KT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 79 KTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDIL 153 (245)
T ss_dssp HHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEE
T ss_pred HHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEE
Confidence 9999999999877542 2246789999999999999999999998754 56666666553222111 1223568999
Q ss_pred EEccHHHHHHHHcC--CCCCCCceEEEecchhHhhc---CCCHHHHHHHHHhCC-CCCcEEEEEeecChHHHHHHHHHcC
Q 008430 250 VATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQEYLT 323 (565)
Q Consensus 250 v~T~~~l~~~l~~~--~~~~~~~~~iIiDE~H~~~~---~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~ 323 (565)
|+||++|.+.+... ...+.++++|||||||++.+ .++...+..++..+. +..|+++||||++.++..++..++.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 99999999998876 46788999999999999987 568888888887764 5689999999999999999999999
Q ss_pred CCeEEEeCC
Q 008430 324 DPVQVKVGK 332 (565)
Q Consensus 324 ~~~~~~~~~ 332 (565)
+|..+.++.
T Consensus 234 ~p~~i~~~~ 242 (245)
T 3dkp_A 234 NVISVSIGA 242 (245)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEeCC
Confidence 999887764
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.1e-27 Score=249.37 Aligned_cols=322 Identities=19% Similarity=0.216 Sum_probs=236.9
Q ss_pred HCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ +|+++|..+++.+++|+ |..+.||+|||++|++|++...+. |..++||+||++||.|.++.+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4688 99999999999999998 999999999999999999755542 567999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHH-HHHHHcCC------CCCC---CceEEEecchhHhh-cCCC
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLS---RVSFVILDEADRML-DMGF 286 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l-~~~l~~~~------~~~~---~~~~iIiDE~H~~~-~~~~ 286 (565)
+..+ ++++++++||........ ...++|+|+||+.| ++++..+. ..+. .+.++||||+|.++ +.+.
T Consensus 144 ~~~l-GLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDear 220 (997)
T 2ipc_A 144 YRGL-GLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEAR 220 (997)
T ss_dssp HHTT-TCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTT
T ss_pred HHhc-CCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCC
Confidence 9876 799999999988654433 34699999999999 88887652 4567 89999999999876 2210
Q ss_pred ---------------HHHHHHHHHhCCC----------------------------------------------------
Q 008430 287 ---------------EPQIREVMQNLPD---------------------------------------------------- 299 (565)
Q Consensus 287 ---------------~~~~~~i~~~~~~---------------------------------------------------- 299 (565)
...+..++..++.
T Consensus 221 tPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l 300 (997)
T 2ipc_A 221 TPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMEL 300 (997)
T ss_dssp SCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHH
T ss_pred CCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHH
Confidence 0111222222210
Q ss_pred -----------------------------------------------------------------------------CCc
Q 008430 300 -----------------------------------------------------------------------------KHQ 302 (565)
Q Consensus 300 -----------------------------------------------------------------------------~~~ 302 (565)
-..
T Consensus 301 ~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~k 380 (997)
T 2ipc_A 301 AHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEK 380 (997)
T ss_dssp HHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChH
Confidence 015
Q ss_pred EEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEec
Q 008430 303 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~ 382 (565)
+.|||+|...+-.++...|-.+. +.+.........-.....+....+|...+++.+.+....+ .|+||+|.
T Consensus 381 LsGMTGTA~tE~~Ef~~iY~l~V--v~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~G-------qPVLVgT~ 451 (997)
T 2ipc_A 381 RAGMTGTAKTEEKEFQEIYGMDV--VVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERG-------QPVLVGTI 451 (997)
T ss_dssp EEEEESSCGGGHHHHHHHHCCCE--EECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHT-------CCEEEECS
T ss_pred heecCCCchHHHHHHHHHhCCCE--EEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCC-------CCEEEEeC
Confidence 67788888777666655554432 2222111111122233455667788888888887665443 26999999
Q ss_pred ccchHHHHHHHHH-------------------------------------------------------------------
Q 008430 383 RKTRCDEVSEALV------------------------------------------------------------------- 395 (565)
Q Consensus 383 s~~~a~~l~~~l~------------------------------------------------------------------- 395 (565)
|++.++.|++.|.
T Consensus 452 SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 531 (997)
T 2ipc_A 452 SIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLK 531 (997)
T ss_dssp SHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 9999999999999
Q ss_pred ---------HcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCc-------------------c---
Q 008430 396 ---------AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV-------------------A--- 444 (565)
Q Consensus 396 ---------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v-------------------~--- 444 (565)
+.|++.-++.+.....+-+-+-+.-+. -.|-|||+|++||.||-=- .
T Consensus 532 ~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~ 609 (997)
T 2ipc_A 532 RAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKV 609 (997)
T ss_dssp HHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHH
T ss_pred hhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccc
Confidence 567777777776443333222222222 3599999999999998421 1
Q ss_pred ----------------------------------------------------EEEEcCCCCCcccceecccccccCCCce
Q 008430 445 ----------------------------------------------------HVVNLDLPKTVEDYVHRIGRTGRGGSMG 472 (565)
Q Consensus 445 ----------------------------------------------------~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g 472 (565)
+||-...+.|...-.|-.||+||.|.+|
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPG 689 (997)
T 2ipc_A 610 ELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPG 689 (997)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCC
T ss_pred ccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 7888888999999999999999999999
Q ss_pred eEEEEeccccHH
Q 008430 473 QATSFYTDRDML 484 (565)
Q Consensus 473 ~~~~~~~~~~~~ 484 (565)
..-.|++-+|..
T Consensus 690 sSrF~LSLeDdL 701 (997)
T 2ipc_A 690 GSRFYVSFDDDL 701 (997)
T ss_dssp EEEEEEESSSHH
T ss_pred CeEEEEECChHH
Confidence 999888877643
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.1e-27 Score=257.93 Aligned_cols=176 Identities=22% Similarity=0.231 Sum_probs=132.7
Q ss_pred CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 008430 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~li 379 (565)
..|++++|||++...... ................+ . +.......+...++..+...... +.++||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~~~-------~~~vlV 444 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP-L---VRVKPTENQILDLMEGIRERAAR-------GERTLV 444 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHHHT-------TCEEEE
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC-e---EEEecccchHHHHHHHHHHHHhc-------CCEEEE
Confidence 568999999997543111 11111111111001111 1 11223334555565555443322 236999
Q ss_pred EecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCC-----CCC
Q 008430 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PKT 454 (565)
Q Consensus 380 F~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~-----~~s 454 (565)
||+++..|+.+++.|.+.|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.+
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s 524 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRS 524 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGS
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 889
Q ss_pred cccceecccccccCCCceeEEEEeccccHHHHHHHHH
Q 008430 455 VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 491 (565)
Q Consensus 455 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 491 (565)
...|+||+||+||.+ .|.++++++..+....+.+.+
T Consensus 525 ~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 525 ERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999995 799999999887766655543
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.7e-26 Score=248.69 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=133.0
Q ss_pred CCcEEEEEeecChHHHHHHHHHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 008430 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~li 379 (565)
..|++++|||++...... ................+ . +.......+...++..+.... ..+.++||
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~-------~~~~~vlV 450 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-L---IDVRPIEGQIDDLIGEIQARI-------ERNERVLV 450 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHH-------TTTCEEEE
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-e---EEEecccchHHHHHHHHHHHH-------hcCCeEEE
Confidence 578999999997543211 11111111111111111 1 112223344555555554432 12346999
Q ss_pred EecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCC-----CCC
Q 008430 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PKT 454 (565)
Q Consensus 380 F~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~-----~~s 454 (565)
||+++..|+.+++.|.+.|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.+
T Consensus 451 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s 530 (661)
T 2d7d_A 451 TTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 530 (661)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTS
T ss_pred EECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred cccceecccccccCCCceeEEEEeccccHHHHHHHHH
Q 008430 455 VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 491 (565)
Q Consensus 455 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 491 (565)
...|+||+||+||. ..|.+++++++.+....+.+.+
T Consensus 531 ~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 531 ERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 99999999999998 6899999999887766555543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=5.2e-26 Score=201.67 Aligned_cols=150 Identities=37% Similarity=0.560 Sum_probs=137.7
Q ss_pred CCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHH
Q 008430 336 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 415 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 415 (565)
...++.+.+..+....|...+...+... ...++||||+++.+++.+++.|...|+.+..+||++++.+|..
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---------NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---------CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 3456888888888889988888877542 2336999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 416 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
+++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+.+...+..+++.+.
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887653
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=209.38 Aligned_cols=167 Identities=38% Similarity=0.643 Sum_probs=133.3
Q ss_pred HHcCCCeEEEeCCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCC
Q 008430 320 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~ 399 (565)
.|+.+|..+.+........++.+.+..+....|...+.+.+.. ..+++||||+++..++.+++.|...|+
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~~~g~ 79 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK----------TPPPVLIFAEKKADVDAIHEYLLLKGV 79 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTT----------SCSCEEEECSCHHHHHHHHHHHHHHTC
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh----------CCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 4677787777776666677889999999888888888776643 123699999999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEec
Q 008430 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 400 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 479 (565)
.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++|++
T Consensus 80 ~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 80 EAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cHHHHHHHHHHHHhh
Q 008430 480 DR-DMLLVAQIKKAIVDA 496 (565)
Q Consensus 480 ~~-~~~~~~~l~~~~~~~ 496 (565)
+. +...+..+++.+...
T Consensus 160 ~~~~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 160 KACDESVLMDLKALLLEA 177 (191)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHc
Confidence 76 778888888777554
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=2.8e-25 Score=197.49 Aligned_cols=147 Identities=32% Similarity=0.553 Sum_probs=127.5
Q ss_pred ceEEEEEEeccch-HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHH
Q 008430 339 NVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (565)
Q Consensus 339 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 417 (565)
++.+.+..+.... |...+.+.+... +.+++||||+++..++.+++.|...++.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---------TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 4566777777666 887777766542 234699999999999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
+.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+.+...+..+++.+.
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888877654
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2e-25 Score=199.53 Aligned_cols=148 Identities=32% Similarity=0.546 Sum_probs=132.6
Q ss_pred CceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHH
Q 008430 338 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (565)
Q Consensus 338 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 417 (565)
.++.+.+..+....|...+...+... +..++||||+++..++.+++.|...|+.+..+||++++.+|..++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---------CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 46778888888888988887777542 234699999999999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccc-cHHHHHHHHHHHH
Q 008430 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 494 (565)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~ 494 (565)
+.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+. +...++.+++.+.
T Consensus 75 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 75 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999875 5566777766553
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=203.16 Aligned_cols=155 Identities=46% Similarity=0.725 Sum_probs=126.7
Q ss_pred CCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHH
Q 008430 334 SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 413 (565)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r 413 (565)
.....++.+.+..+....|...+.+.+... .+..++||||+++..++.+++.|...|+.+..+||++++.+|
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--------~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC---------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 344568889999999889988888877652 134569999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008430 414 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 414 ~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 493 (565)
..+++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++++.+...++.+.+.+
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 165 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 165 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred Hhh
Q 008430 494 VDA 496 (565)
Q Consensus 494 ~~~ 496 (565)
...
T Consensus 166 ~~~ 168 (185)
T 2jgn_A 166 VEA 168 (185)
T ss_dssp HHT
T ss_pred Hhc
Confidence 654
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.3e-25 Score=199.01 Aligned_cols=149 Identities=28% Similarity=0.460 Sum_probs=129.8
Q ss_pred CCceEEEEEEeccch-HHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHH
Q 008430 337 TANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 415 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 415 (565)
..++.+.+..+.... |...+...+.. .+.+++||||+++.+++.+++.|...|+.+..+||++++.+|..
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGS---------ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT---------SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 457788888887655 77766665532 23457999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceEEEEcCcccCCCCccCccEEEEcCCC------CCcccceecccccccCCCceeEEEEeccccHHHHHHH
Q 008430 416 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 489 (565)
+++.|++|+++|||||+++++|+|+|++++||++|+| .+...|+||+||+||.|+.|.+++++...+...+..+
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 9999999999999999999999999999999999999 8999999999999999999999999999998888888
Q ss_pred HHHHH
Q 008430 490 KKAIV 494 (565)
Q Consensus 490 ~~~~~ 494 (565)
++.+.
T Consensus 156 ~~~~~ 160 (175)
T 2rb4_A 156 QDHFN 160 (175)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77664
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=1.8e-24 Score=200.21 Aligned_cols=145 Identities=36% Similarity=0.529 Sum_probs=129.2
Q ss_pred EEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhh
Q 008430 342 QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR 421 (565)
Q Consensus 342 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 421 (565)
+.........|...+.+.+... ..+++||||+++.+++.+++.|...|+.+..+||++++.+|..+++.|+
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~ 78 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVA---------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR 78 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHH---------CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHH
T ss_pred eeEEeCCHHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH
Confidence 3445556677888887777532 2346999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 422 NGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 422 ~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
+|+++|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++..+...+..+++.+..
T Consensus 79 ~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 79 QGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp SSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred CCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1.2e-23 Score=203.62 Aligned_cols=147 Identities=34% Similarity=0.511 Sum_probs=128.9
Q ss_pred eEEEEEEeccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHH
Q 008430 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 340 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
+.+.+..+....|...+.+.+.... .+++||||+++..++.+++.|...++.+..+||++++.+|..+++.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~---------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~ 73 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS---------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGA 73 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC---------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC---------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 4566777788888888887775432 3469999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHHh
Q 008430 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 495 (565)
|++|+++|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|++..+...+..+++.+..
T Consensus 74 f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 74 FRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp HHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred hhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888777643
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=200.50 Aligned_cols=167 Identities=21% Similarity=0.244 Sum_probs=118.9
Q ss_pred CCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH-HHHHHHHH
Q 008430 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-IEKEVKAL 217 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q-~~~~~~~~ 217 (565)
....+|+++|.++++.++.++++++.+|||+|||++++++++..+..... ...++++||++|+++|+.| +.+.+.++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999888876654311 1136679999999999999 88888888
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCC------CCCCCceEEEecchhHhhcCCCHHHH-
Q 008430 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN------TSLSRVSFVILDEADRMLDMGFEPQI- 290 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~------~~~~~~~~iIiDE~H~~~~~~~~~~~- 290 (565)
... ++.+..+.|+............+++|+|+||+.|...+.... ..+.++++|||||||++.+.++...+
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 754 567888877765433333333468999999999998887643 56778999999999999876544433
Q ss_pred HHHHHhC-------------CCCCcEEEEEee
Q 008430 291 REVMQNL-------------PDKHQTLLFSAT 309 (565)
Q Consensus 291 ~~i~~~~-------------~~~~~~l~~SAT 309 (565)
..++... .+..++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2222211 156789999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.83 E-value=1.8e-25 Score=199.69 Aligned_cols=146 Identities=36% Similarity=0.595 Sum_probs=127.3
Q ss_pred eEEEEEEecc-chHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHH
Q 008430 340 VIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALR 418 (565)
Q Consensus 340 ~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 418 (565)
+.+.+..+.. ..|...+...+... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~---------~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP---------EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 3444555555 56666666655431 2236999999999999999999999999999999999999999999
Q ss_pred HhhcCCceEEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEEEeccccHHHHHHHHHHHH
Q 008430 419 DFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 494 (565)
.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++...+...+..+++.+.
T Consensus 75 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999998888887776543
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.4e-22 Score=214.14 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEE--EcCcccCCCCccC----ccEEE
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV--ATDVASRGLDVMG----VAHVV 447 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv--~T~~~~~Gidip~----v~~Vi 447 (565)
.+.+|||++|...++.+++.+.. .+ ...++.. .+|.++++.|+++. .||+ +|+.+.+|||+|+ +++||
T Consensus 384 ~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp SSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 34699999999999999988865 23 3445543 46889999999865 5777 7899999999997 89999
Q ss_pred EcCCCCCcc------------------------------cceecccccccCCCceeEEEEeccc
Q 008430 448 NLDLPKTVE------------------------------DYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 448 ~~~~~~s~~------------------------------~~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
+++.|.... .+.|.+||+.|...+--++++++.+
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 999885322 2368999999976554455566554
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.5e-22 Score=196.71 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=123.1
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.+++.++++|||+|||++++.++...+.. .+.++|||+|+++|+.|+.++++++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~- 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSC-
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhccc-
Confidence 38999999999999988889999999999999997776655443 2447999999999999999999998643
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCC
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
....+..+.++..... ....+.+|+|+||+.+.+. ....+.++++|||||||++. ...+..++..+....
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 2456777777754322 1225689999999988533 22346689999999999987 457888888887788
Q ss_pred cEEEEEeecChHH
Q 008430 302 QTLLFSATMPVEI 314 (565)
Q Consensus 302 ~~l~~SAT~~~~~ 314 (565)
+++++||||+...
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999997654
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=1.5e-19 Score=191.70 Aligned_cols=312 Identities=14% Similarity=0.117 Sum_probs=194.9
Q ss_pred CCCHHHHHHHHhH----hCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~l----~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+++|+|.+++..+ ..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 6899999987754 478999999999999999999999872 6789999999999999999988875
Q ss_pred hcCCCceEEEEECCCCH---------------------------------HHHH------------------HHHhCCCc
Q 008430 219 RSLDSFKTAIVVGGTNI---------------------------------AEQR------------------SELRGGVS 247 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~ 247 (565)
... ++++..+.|..+. .... ......++
T Consensus 72 ~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 72 EKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 543 5677776663211 1111 22235689
Q ss_pred EEEEccHHHHHHHHcCCCCC-CCceEEEecchhHhhcCC-----------------------------------------
Q 008430 248 IVVATPGRFLDHLQQGNTSL-SRVSFVILDEADRMLDMG----------------------------------------- 285 (565)
Q Consensus 248 ilv~T~~~l~~~l~~~~~~~-~~~~~iIiDE~H~~~~~~----------------------------------------- 285 (565)
|||+|+..|++......+.+ ....+|||||||++.+ .
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988765544333 4678999999998765 1
Q ss_pred --------------CHHHHHHH----------------------------H----------------------------H
Q 008430 286 --------------FEPQIREV----------------------------M----------------------------Q 295 (565)
Q Consensus 286 --------------~~~~~~~i----------------------------~----------------------------~ 295 (565)
+...+..+ + .
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 00000000 0 0
Q ss_pred hCCCC-CcEEEEEeecChHHHHHHHHHcCCC--eEEE--eCCcCCCCCceEEEEEE--ecc------chHHHHHHHHHHH
Q 008430 296 NLPDK-HQTLLFSATMPVEIEALAQEYLTDP--VQVK--VGKVSSPTANVIQILEK--VSE------NEKVDRLLALLVE 362 (565)
Q Consensus 296 ~~~~~-~~~l~~SAT~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~--~~~------~~k~~~l~~~l~~ 362 (565)
.+... ..+|++|||+.+ ...+.. .++-+ .... ......+...-...+.. ++. ......+.+.+..
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 01122 568999999976 222222 33322 2100 10111111111111111 111 1113344444443
Q ss_pred HHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEc--CcccCCCCc
Q 008430 363 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT--DVASRGLDV 440 (565)
Q Consensus 363 ~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gidi 440 (565)
.... .++.+|||++|....+.+++. .+.++..-..+++ +.++++.|+...-.||++| ..+.+|||+
T Consensus 388 l~~~------~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~ 455 (551)
T 3crv_A 388 IYFQ------AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIEL 455 (551)
T ss_dssp HHHH------CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCC
T ss_pred HHHh------CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccc
Confidence 3221 223699999999999988872 3444443333444 4567888854444799998 699999999
Q ss_pred c-----CccEEEEcCCCCCcc------------------c------------ceecccccccCCCceeEEEEeccc
Q 008430 441 M-----GVAHVVNLDLPKTVE------------------D------------YVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 441 p-----~v~~Vi~~~~~~s~~------------------~------------~~Q~~GR~~R~g~~g~~~~~~~~~ 481 (565)
| .++.||+.+.|.... . +.|.+||+-|...+--++++++.+
T Consensus 456 ~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 456 RNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 9 378999888764111 1 158889999987665566666655
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=182.15 Aligned_cols=180 Identities=19% Similarity=0.221 Sum_probs=131.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHH
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q 209 (565)
+.+.+.+.......++++|.++++.+..|++++++|+||+|||.++.++++........ ..+.++++++|+++++.|
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHH
Confidence 34444444444556899999999999999999999999999999888888876665321 124589999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHh-hcCCCH-
Q 008430 210 IEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFE- 287 (565)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~-~~~~~~- 287 (565)
+.+.+...++...+..++.-...... ....+++|+|+||++|.+.+.. .+.++++|||||+|++ .+.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 99999877654333444433322110 0114588999999999998876 4788999999999985 555554
Q ss_pred HHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHHcCC
Q 008430 288 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD 324 (565)
Q Consensus 288 ~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 324 (565)
..++.++... ++.|+++||||++.+. +..++.+
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~---~~~~~~~ 229 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM---FCEYFFN 229 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH---HHHHTTS
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH---HHHHcCC
Confidence 3556666665 4688999999998775 4455543
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=5.4e-20 Score=173.06 Aligned_cols=140 Identities=19% Similarity=0.123 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~-~--- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGI-F--- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGG-G---
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHh-C---
Confidence 48999999999999998899999999999999986655432 45699999999999999999988 3
Q ss_pred CCce-EEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCC
Q 008430 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
+.. +..+.|+.. ...+|+|+|++.+...... ....+++|||||+|++.+.. +..++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~ 218 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES----YVQIAQMSI-A 218 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT----HHHHHHTCC-C
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChH----HHHHHHhcc-C
Confidence 456 777777653 3579999999998765542 12458999999999987654 345666665 4
Q ss_pred CcEEEEEeecChHH
Q 008430 301 HQTLLFSATMPVEI 314 (565)
Q Consensus 301 ~~~l~~SAT~~~~~ 314 (565)
.+++++||||....
T Consensus 219 ~~~l~LSATp~r~D 232 (237)
T 2fz4_A 219 PFRLGLTATFERED 232 (237)
T ss_dssp SEEEEEEESCC---
T ss_pred CEEEEEecCCCCCC
Confidence 67999999997654
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=3.7e-18 Score=182.20 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHh----HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHh
Q 008430 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~~l~~----l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|++.|.+++.. +..|+++++.||||+|||++|++|++..+... +++++|++||++++.|+.+.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 579999999864 45789999999999999999999999987653 6789999999999999999999887
Q ss_pred hcCCCceEEEEEC
Q 008430 219 RSLDSFKTAIVVG 231 (565)
Q Consensus 219 ~~~~~~~~~~~~g 231 (565)
... .+++..+.|
T Consensus 76 ~~~-~~~~~~l~g 87 (620)
T 4a15_A 76 STM-KIRAIPMQG 87 (620)
T ss_dssp HHS-CCCEEECCC
T ss_pred hcc-CeEEEEEEC
Confidence 643 456655555
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=1.3e-18 Score=166.25 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-CCceeEecCCCCHHHHHHHHHHhhcC-Cc
Q 008430 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-ST 425 (565)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~ 425 (565)
....|...+.+.+...... +.++||||++...++.+.+.|... |+.+..+||+++..+|..+++.|++| ++
T Consensus 93 ~~s~K~~~L~~ll~~~~~~-------~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDE-------GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHT-------TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHHhC-------CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 4567888888877765432 236999999999999999999985 99999999999999999999999998 77
Q ss_pred e-EEEEcCcccCCCCccCccEEEEcCCCCCcccceecccccccCCCceeEEE--Eeccc
Q 008430 426 N-ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS--FYTDR 481 (565)
Q Consensus 426 ~-vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~ 481 (565)
+ +|++|+++++|+|++.+++||+||+||++..|.|++||++|.|+.+.|.+ ++...
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 7 78999999999999999999999999999999999999999999877644 44443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.81 E-value=8.3e-09 Score=110.04 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=88.1
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHH--HHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAA--FTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~--~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.+.|++|++.++.++.+++.|++|||||.+ ++++.+..+. ...+.++++++||..++.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA------DGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999954 4444443221 11356899999999999999888876654321
Q ss_pred CceEEEEECCCCHHHHHHHHhCCC-cEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCC
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGV-SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~-~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
+..... .+... ..... .++-.+++.. . +.........+++|||||++.+. ...+..++..++...
T Consensus 225 -l~~~~~-~~~~~------~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 225 -LTDEQK-KRIPE------DASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHA 290 (608)
T ss_dssp -CCSCCC-CSCSC------CCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTC
T ss_pred -CCHHHH-hccch------hhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCC
Confidence 110000 00000 00001 1111222211 0 11111222368999999999543 567788899998888
Q ss_pred cEEEEEee
Q 008430 302 QTLLFSAT 309 (565)
Q Consensus 302 ~~l~~SAT 309 (565)
|++++.-.
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 88887644
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.47 E-value=8.5e-07 Score=93.52 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..+++.|++++..++.++.++|.|+.|||||.+. ..++..+.. .+.++++++||...+..+.+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhc------
Confidence 4689999999999998888999999999999874 444444443 36779999999988776554321
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHH----HHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH----LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~----l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~ 297 (565)
.. ..|..+++.. +.........+++|||||++.+. ...+..++..+
T Consensus 254 --~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~ 303 (574)
T 3e1s_A 254 --RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAV 303 (574)
T ss_dssp --SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTS
T ss_pred --cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhC
Confidence 00 1111111100 00111223368999999999765 56777888888
Q ss_pred CCCCcEEEEE
Q 008430 298 PDKHQTLLFS 307 (565)
Q Consensus 298 ~~~~~~l~~S 307 (565)
+...+++++.
T Consensus 304 ~~~~~lilvG 313 (574)
T 3e1s_A 304 PPGARVLLVG 313 (574)
T ss_dssp CTTCEEEEEE
T ss_pred cCCCEEEEEe
Confidence 8777666654
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.44 E-value=2.2e-06 Score=91.87 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
...+++.|.+|+..++.+.-.+|.||+|||||.+. ..++..+... .+.++|+++|+...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999887777899999999999875 4455555542 3667999999999999988887653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.44 E-value=4.5e-07 Score=97.76 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHhHhCCCC-EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|++-|.+|+..++..++ .||.||.|||||.+. ..++..+... +.++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3689999999999887665 789999999999886 4455555553 678999999999999988887653
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.9e-06 Score=92.93 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
+..+++.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++|+++|+...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999987777899999999999875 4444444432 2567999999999999999888764
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.41 E-value=1.1e-06 Score=90.79 Aligned_cols=134 Identities=12% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCCCCCHHHHHHHHhHhC----CC-CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHH
Q 008430 139 HEYTRPTSIQAQAMPVALS----GR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 139 ~~~~~~~~~Q~~~l~~l~~----g~-~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~ 213 (565)
..+..|++-|++++..++. ++ .++|.|+.|||||.+. ..++..+... ....+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------GETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT------TCCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc------CCceEEEecCcHHHHHHHHhh
Confidence 4567889999999997753 23 7999999999999875 5555555553 123699999998877655543
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHH---HhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHH
Q 008430 214 VKALSRSLDSFKTAIVVGGTNIAEQRSE---LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
+. ..+..+. ..... ...... .+.. .....+..+++|||||+|.+. ...+
T Consensus 94 ~~--------~~~~T~h------~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~iiiDE~~~~~----~~~~ 145 (459)
T 3upu_A 94 SG--------KEASTIH------SILKINPVTYEENV-LFEQ---------KEVPDLAKCRVLICDEVSMYD----RKLF 145 (459)
T ss_dssp HS--------SCEEEHH------HHHTEEEEECSSCE-EEEE---------CSCCCCSSCSEEEESCGGGCC----HHHH
T ss_pred hc--------cchhhHH------HHhccCcccccccc-hhcc---------cccccccCCCEEEEECchhCC----HHHH
Confidence 31 1111000 00000 000000 1111 112345578999999999764 5566
Q ss_pred HHHHHhCCCCCcEEEEE
Q 008430 291 REVMQNLPDKHQTLLFS 307 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~S 307 (565)
..++..++...+++++.
T Consensus 146 ~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 146 KILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEEC
Confidence 77777776566555544
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.36 E-value=4.4e-05 Score=82.52 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..+++.|.+|+.. .+..++|.|+.|||||.+.+--+ .+++.... ..+.++|++++|+..+.++.+++.+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri-~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRI-AWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHH-HHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4789999999983 35679999999999999864433 44444311 1245799999999999999999998864
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.35 E-value=4.6e-06 Score=91.24 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 141 ~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
...+++.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++|+++|+...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45789999999999888777899999999999875 4555555542 356799999999999988887765
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.89 E-value=2.6e-05 Score=74.53 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEE
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
...|...+-+++.... ..++++|||++..+..+-+.+++...++....++|.....+ .+ -.++...+.
T Consensus 107 ~SGKf~~L~~LL~~l~-------~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~ 174 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQ-------EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVH 174 (328)
T ss_dssp TCHHHHHHHHHHHHHT-------TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEE
T ss_pred cCccHHHHHHHHHHHH-------hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEE
Confidence 4566665555555432 23457999999999999999999999999999999854432 11 124556666
Q ss_pred EEcCcccCCCC-----ccCccEEEEcCCCCCcccc-eecccccccC--CC--ceeEEEEeccccHH
Q 008430 429 VATDVASRGLD-----VMGVAHVVNLDLPKTVEDY-VHRIGRTGRG--GS--MGQATSFYTDRDML 484 (565)
Q Consensus 429 v~T~~~~~Gid-----ip~v~~Vi~~~~~~s~~~~-~Q~~GR~~R~--g~--~g~~~~~~~~~~~~ 484 (565)
+.|...+-|+| +...++||.||+.+++..- +|++-|+.|. |+ .-.++-++.....+
T Consensus 175 Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 175 LFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp EEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred EEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 65766666776 6789999999999999885 9999999987 33 34566666665433
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.55 E-value=0.00083 Score=66.54 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+|+|+..+..+...+.+++..+-+.|||.+.+..++..+... .+..+++++|+..-+..+.+.++.++...+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 78999999998875456689999999999998766555544432 356799999999999988888888876543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.26 E-value=0.0032 Score=66.79 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+|+|+..+..+-..+.+++..+-|.|||.+.+..++..+... .+..++++.|+...+..+.+.++.++...+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 58999999998875556789999999999998765555554442 255799999999999999988888876543
Q ss_pred C-ceEEEE-ECCCCHHHHHHHHhCCCcEEEEc--cHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCC
Q 008430 223 S-FKTAIV-VGGTNIAEQRSELRGGVSIVVAT--PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 223 ~-~~~~~~-~g~~~~~~~~~~~~~~~~ilv~T--~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
. +..... ...... .+.++..|.+.+ +..+.- . .++++|+||+|...+. ...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lrG------~---~~~~~iiDE~~~~~~~--~~l~~~~~~~l~ 300 (592)
T 3cpe_A 237 DFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVRG------N---SFAMIYIEDCAFIPNF--HDSWLAIQPVIS 300 (592)
T ss_dssp TTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHHH------S---CCSEEEEETGGGCTTH--HHHHHHHHHHHS
T ss_pred HhhccccccCCccEE-----EecCCCEEEEEeCCCCCccC------C---CcceEEEehhccCCch--hHHHHHHHHHhc
Confidence 2 111111 011000 112334444433 333321 1 3679999999976431 233444443333
Q ss_pred --CCCcEEEEEeecCh
Q 008430 299 --DKHQTLLFSATMPV 312 (565)
Q Consensus 299 --~~~~~l~~SAT~~~ 312 (565)
++. .+++..||..
T Consensus 301 ~~~~~-~ii~isTP~~ 315 (592)
T 3cpe_A 301 SGRRS-KIIITTTPNG 315 (592)
T ss_dssp SSSCC-EEEEEECCCT
T ss_pred cCCCc-eEEEEeCCCC
Confidence 234 4445556644
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.10 E-value=0.00096 Score=66.87 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=63.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
.++.|+.|+|||... ... .. ....+|++||++++..+.+.+.+.. ..
T Consensus 164 ~~I~G~aGsGKTt~I-~~~----~~--------~~~~lVlTpT~~aa~~l~~kl~~~~-----~~--------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI-LSR----VN--------FEEDLILVPGRQAAEMIRRRANASG-----II--------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH-HHH----CC--------TTTCEEEESCHHHHHHHHHHHTTTS-----CC---------------
T ss_pred EEEEcCCCCCHHHHH-HHH----hc--------cCCeEEEeCCHHHHHHHHHHhhhcC-----cc---------------
Confidence 689999999999864 211 11 1347999999999988877764320 00
Q ss_pred HHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 241 ~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
.....-|.|.++++. .......-.+++|||||+-.+- ...+..++...+. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~~----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLMLH----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGSC----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccCC----HHHHHHHHHhCCC-CEEEEecCc
Confidence 001223778777652 1111222248999999998542 3444555555554 556665544
No 106
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.09 E-value=0.0022 Score=69.87 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|++|+... +..++|.|+.|||||.+..--+. +++..... ...++|+|+.|+..+.++.+++.+.++..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~-~ll~~~~~---~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIA-YLMAEKHV---APWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHH-HHHHTTCC---CGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHH-HHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 46899999999863 46799999999999998644444 44432111 24569999999999999999998876421
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCC-CC-CCceEEEecchhH
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SL-SRVSFVILDEADR 280 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~-~~-~~~~~iIiDE~H~ 280 (565)
...+-|+|...|...+.+... .. -.-++-|+|+.+.
T Consensus 84 -----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 -----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp -----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred -----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 023568998888655433211 11 0123567887763
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.92 E-value=0.0026 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.2
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.|+.+++.||+|+|||..+ -.+...+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~-~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA-VATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4677999999999999875 3344443
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0058 Score=58.82 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=20.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
+.++++.||+|+|||.+. -.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 356999999999999876 555555544
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.62 E-value=0.0047 Score=54.61 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
|+-.++.|++|+|||..+ +-++..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeecc
Confidence 455789999999999875 445554443 266799998874
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.0024 Score=58.15 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-.++.|++|+|||... +-++..+.. .+.+++++.|...-. - ...+.... |-.
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~-------~g~kVli~~~~~d~r--~---~~~i~srl---------G~~---- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEY-------ADVKYLVFKPKIDTR--S---IRNIQSRT---------GTS---- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEECCCGG--G---CSSCCCCC---------CCS----
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHh-------cCCEEEEEEeccCch--H---HHHHHHhc---------CCC----
Confidence 445788999999999875 555555544 366799998765310 0 00111100 100
Q ss_pred HHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhh
Q 008430 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
-..+-+.+.+.+...+... ..-..+++|||||++.+.
T Consensus 66 -------~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 -------LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC
T ss_pred -------ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc
Confidence 0123345566666665542 222358999999999753
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.50 E-value=0.011 Score=57.90 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhHh----CCC--C-EEEEccCCChhHHHHHHHHHHHHH
Q 008430 144 PTSIQAQAMPVAL----SGR--D-LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 144 ~~~~Q~~~l~~l~----~g~--~-~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
++|+|.+++..+. +|+ + +|+.||.|+|||.++ ..+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHh
Confidence 4688888876654 444 3 899999999999876 44555544
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.47 E-value=0.0035 Score=56.20 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
|+=.++.|++|+|||..+ +-.+..... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~-------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQF-------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH-------CCCEEEEEEeccC
Confidence 333678999999999765 555555544 3778999998753
No 113
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.04 Score=48.35 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
..+++.|++|+|||.++ -.+...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~-~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV-EGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHH
Confidence 56999999999999875 34444443
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.46 E-value=0.0012 Score=56.22 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.6
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778999999999999864
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.42 E-value=0.013 Score=56.88 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=19.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+..+++.||+|+|||..+ -.+...+.
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 357999999999999875 34444443
No 116
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.38 E-value=0.0065 Score=53.87 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=28.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
|+=.++.|++|+|||... +-++..+.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~-------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKI-------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH-------CCCEEEEEEecc
Confidence 444788999999999765 555555544 377899999873
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.32 E-value=0.009 Score=63.03 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHhHhCC--CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhc
Q 008430 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g--~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
.+|.-|.+++..+..- ...++.|+-|.|||.+.-+. +..+. ..++|.+|+.+-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~----------~~~~vtAP~~~a~~~l~~----~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIA----------GRAIVTAPAKASTDVLAQ----FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSS----------SCEEEECSSCCSCHHHHH----HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHH----------hCcEEECCCHHHHHHHHH----HhhC
Confidence 6799999999988763 34789999999999654332 22221 137999999887654332 2211
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhCCCC
Q 008430 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
.|-+..|+.+.. .....+++|||||=.+. .+.+..++..+
T Consensus 240 --------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~--- 279 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF--- 279 (671)
T ss_dssp --------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS---
T ss_pred --------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC---
Confidence 022445655431 23358999999999775 67777777644
Q ss_pred CcEEEEEeec
Q 008430 301 HQTLLFSATM 310 (565)
Q Consensus 301 ~~~l~~SAT~ 310 (565)
..++||.|.
T Consensus 280 -~~v~~~tTv 288 (671)
T 2zpa_A 280 -PRTLLTTTV 288 (671)
T ss_dssp -SEEEEEEEB
T ss_pred -CeEEEEecC
Confidence 368888887
No 118
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.28 E-value=0.006 Score=65.93 Aligned_cols=71 Identities=21% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.|++-|++++... +..++|.|+.|||||.+.+--+...+..... ...++|+|+.|+..+.++.+++.+.++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5799999999863 5679999999999999864444443333211 245699999999999999999988764
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.25 E-value=0.032 Score=48.79 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
...+++.||+|+|||.++ ..+...+
T Consensus 43 ~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999875 3344443
No 120
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.21 E-value=0.061 Score=50.62 Aligned_cols=17 Identities=35% Similarity=0.178 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+++.||+|+|||.++
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 36999999999999875
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.20 E-value=0.02 Score=55.65 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=24.4
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 578999999998862222444555566555555555533
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.11 E-value=0.027 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+.+++.||+|+|||..+ ..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 67999999999999875 33444443
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.042 Score=52.11 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=30.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhH--hCCCCEEEEccCCChhHHHH
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVA--LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l--~~g~~~li~a~TGsGKT~~~ 175 (565)
...|+++.-.+...+.+...-.. + ....+.+..+ ...+.+++.||+|+|||.++
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL-P-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH-H-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-H-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45677876666666665321100 0 0001111111 24467999999999999865
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.02 E-value=0.051 Score=48.99 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEee
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
....+|||||+|.+... ....+..++........+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999987532 234455566665555545554433
No 125
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.01 E-value=0.02 Score=51.84 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
|+=.++.|++|+|||..+ +-.+..... .|.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~l-L~~~~r~~~-------~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTEL-MRRVRRFQI-------AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHHT-------TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHH-------CCCeEEEEeecCC
Confidence 445788999999999765 444444443 3778999998754
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.90 E-value=0.021 Score=50.29 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=27.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (565)
|+=.++.|++|+|||.-. +-.+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEccc
Confidence 445789999999999543 4455544442 5779999887
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.87 E-value=0.039 Score=55.38 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCceEEEecchhHhh---cCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 268 SRVSFVILDEADRML---DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~---~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++++||||++-++. +..+...+..+.....+..-++.++|+...+....+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 468999999997643 223455566666666666667788888755544444433
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.047 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=18.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
+..+++.||+|+|||.++ -.+...+
T Consensus 44 ~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999875 3344433
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.026 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=17.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
+.+++.||+|+|||.++ -.+...+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 45999999999999875 4444443
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.71 E-value=0.055 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=18.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
..+++.||+|+|||..+ -.+...+.
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l~ 155 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYVV 155 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999875 33444443
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.68 E-value=0.099 Score=50.57 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=29.6
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHh-----CCCCEEEEccCCChhHHHH
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~-----~g~~~li~a~TGsGKT~~~ 175 (565)
+...|+++.-...+.+.|...-. .+. ..+.+. ..+.+|+.||+|+|||.++
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568888766766666633110 000 001111 1246999999999999875
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.59 E-value=0.011 Score=52.92 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
|.=.++.|++|+|||... +..+..+.. .+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~-------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIY-------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCceEEEEeccC
Confidence 444688999999999754 545555444 2667999999654
No 133
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.47 E-value=0.024 Score=65.48 Aligned_cols=110 Identities=23% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcC
Q 008430 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.++++-|.+++..- +++++|.|..|||||.+.+--++..+.... ..-...++|+|++|+..+.++.+++...+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36899999999864 778999999999999986555554443321 01134579999999999999999988865421
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHc
Q 008430 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ 262 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~ 262 (565)
+.. +.........+..-..+-|+|...|...+..
T Consensus 85 --~~~-----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~ 118 (1232)
T 3u4q_A 85 --LVQ-----RPGSLHIRRQLSLLNRASISTLHSFCLQVLK 118 (1232)
T ss_dssp --HHH-----STTCHHHHHHHHHTTTSEEECHHHHHHHHHH
T ss_pred --hhc-----CcchHHHHHHHhccCCCeEEeHHHHHHHHHH
Confidence 000 0000111122222235678999888655543
No 134
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.46 E-value=0.12 Score=50.42 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.++++.||+|+|||.++
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999875
No 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.43 E-value=0.13 Score=49.14 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=29.8
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHh--HhCCCCEEEEccCCChhHHHH
Q 008430 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV--ALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~--l~~g~~~li~a~TGsGKT~~~ 175 (565)
+...|+++.-...+.+.+...-. .|..+. +.+.. +..++.+++.||+|+|||.++
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~-~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHP-DKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCH-HHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCH-HHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34568888666666555532100 000000 00111 224567999999999999875
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.43 E-value=0.032 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.++++.||+|+|||.++ -.+...+
T Consensus 68 ~~vll~G~~GtGKT~la-~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA-LKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999875 3344443
No 137
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.099 Score=52.46 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=34.4
Q ss_pred CCccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 117 PAPIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 117 ~~~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
..|..+|++++-.+...+.|... .+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45667899998777777666421 1111212221111 12357999999999999875
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.21 E-value=0.028 Score=51.67 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=18.9
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.++.+++.||+|+|||..+ -.+...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 3567999999999999875 3333433
No 139
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.16 Score=50.30 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=31.0
Q ss_pred ccCCcccCCCCHHHHHHHHHCC---CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 119 ~~~~f~~~~l~~~i~~~l~~~~---~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
|-.+|++.+=-.+..+.|...= +..|--++... +...+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4567888865565655553211 11111111111 112367999999999999875
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.03 E-value=0.024 Score=56.45 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999865
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.099 Score=50.06 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...++|||||+|.+.... ...+.+.+...++...+++.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 458999999999886332 334555666555555444444
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.00 E-value=0.46 Score=44.03 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+.+++.||+|+|||.++
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999875
No 143
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.95 E-value=0.22 Score=48.99 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=17.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~ 182 (565)
+.+|+.||+|+|||.++ -.+...
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHH
Confidence 56999999999999875 334443
No 144
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.83 E-value=0.13 Score=55.99 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=64.7
Q ss_pred eEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEEcC
Q 008430 376 LTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~~~ 450 (565)
++++.++++.-|...++.+.+. ++.+..+||+++..++...++.+.+|+.+|+|+|. .+...+++.++.+||.-.
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEES
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecc
Confidence 5999999999888887777654 78999999999999999999999999999999996 566678888898887643
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.4 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
+..+++.||.|+|||..+ -.+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999875 3344433
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.73 E-value=0.12 Score=51.94 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=63.0
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--cchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
-++++|++|+|||.+. .-+...+.. .|.+++++. |.+.-+. +.++.+.... ++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~-------~G~kVllv~~D~~R~aa~---eqL~~~~~~~-gvpv~~~~~~~d--- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQK-------RGYKVGVVCSDTWRPGAY---HQLRQLLDRY-HIEVFGNPQEKD--- 166 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEECCCSSTHHH---HHHHHHHGGG-TCEEECCTTCCC---
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeCCCcchhHH---HHHHHHHHhc-CCcEEecCCCCC---
Confidence 3788999999999875 334444333 366677766 4444333 3333333221 222221111111
Q ss_pred HHHHHhCCCcEEEEccHHH-HHHHHcCCCCCCCceEEEecchhHhhcC-CCHHHHHHHHHhCCCCCcEEEEEeecChHHH
Q 008430 238 QRSELRGGVSIVVATPGRF-LDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 238 ~~~~~~~~~~ilv~T~~~l-~~~l~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 315 (565)
|..+ .+.+.. .....+++||||.+=++... .....+..+.....+..-++.+.|+-..+..
T Consensus 167 ---------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 167 ---------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp ---------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred ---------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 1111 111111 11124788888887543211 1223344555555555557777887755544
Q ss_pred HHHHHH
Q 008430 316 ALAQEY 321 (565)
Q Consensus 316 ~~~~~~ 321 (565)
..+..+
T Consensus 230 ~~a~~f 235 (443)
T 3dm5_A 230 NQALAF 235 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 147
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.69 E-value=0.53 Score=41.40 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCceEEEecchhHhhcCCC--HHHHHHHHHhCCCCCcEEEEEeecChHHHH
Q 008430 268 SRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 316 (565)
..+++||+||+-.....++ ...+..++...+...-+|+.+--++..+.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 5689999999987654442 344556666655555566655556665544
No 148
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.34 Score=48.48 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=30.3
Q ss_pred CccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.|-.+|++.+=-..+.+.|... .+..|--++... +...+.+|+.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3456788886556555555321 000111111110 112356999999999999875
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.41 E-value=0.96 Score=40.87 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999864
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.1 Score=50.38 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
....+|||||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35789999999987532 1344555666655555455443
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.33 E-value=0.13 Score=50.27 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+... ....+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987532 2344666677666655555443
No 152
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.26 E-value=0.13 Score=50.55 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||.++
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999875
No 153
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.25 E-value=0.75 Score=45.01 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999875
No 154
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.10 E-value=0.17 Score=51.95 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=26.7
Q ss_pred ceEEEecchhHhhcCC----------CHHHHHHHHHhCCCCCcEEEEEeecC
Q 008430 270 VSFVILDEADRMLDMG----------FEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~----------~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
..+|+|||+|.+.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 3689999999886431 12334455565555556777777754
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.07 E-value=0.22 Score=48.69 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEe
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
....+|+|||+|.+... ....+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35689999999987532 13445566666655555555443
No 156
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.41 Score=48.06 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=32.2
Q ss_pred CccCCcccCCCCHHHHHHHHHCC---CCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~---~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.|-.+|++.+=-.++.+.|...= +..|-.++... +..-+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 44577889876676666664321 01111111110 113357999999999999875
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.98 E-value=0.45 Score=47.28 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999875
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.27 Score=50.95 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=26.0
Q ss_pred CceEEEecchhHhhcCC--CHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 269 RVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...+|||||+|.+.... ....+..++... ...+++++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 46799999999886532 224455555543 34577777765
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.93 E-value=0.061 Score=54.61 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+|+.||+|+|||.++
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999875
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.86 E-value=0.23 Score=47.85 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+++.||+|+|||.++
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999875
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.79 E-value=0.51 Score=46.36 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEE
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~ 306 (565)
....+|||||+|.+.... ...+.+.+...+....+|+.
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEE
Confidence 346899999999875321 23344555554444433333
No 162
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.73 E-value=0.2 Score=49.08 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
.+.++|||||+|.+ +......+.+++...+....+|+.|-.+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 35789999999984 3333455666677666666555555544
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.65 E-value=0.22 Score=45.75 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
.|.-+++.|++|+|||..+ +-++..... .+..++|+.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~-------~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLK-------MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEccC-CHHHHHHHHH
Confidence 4566899999999999875 334333333 245578877543 3455555554
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.58 E-value=0.17 Score=48.66 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=23.5
Q ss_pred CceEEEecchhHhhcCCCHHHHHHHHHhCCCCCcEEEEE
Q 008430 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+|||||+|.+.... ...+.+++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999875321 233455556555555555544
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.17 E-value=0.2 Score=50.14 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.7
Q ss_pred CEEE--EccCCChhHHHH
Q 008430 160 DLLG--CAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li--~a~TGsGKT~~~ 175 (565)
.++| .|+.|+|||.+.
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 4777 899999999875
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.93 E-value=0.55 Score=47.70 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~ 214 (565)
.|.-++|.|++|+|||..+ +-+...+... .|..++|+..... ..|+..++
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~~~~------~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNVATK------TNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHHHHH------SSCCEEEEESSSC-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHHh------CCCcEEEEECCCC-HHHHHHHH
Confidence 3455899999999999865 4444444332 2445888775332 34555444
No 167
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.82 E-value=0.43 Score=48.68 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.+....+.+.||+|||++. ..++.. .+..+|||+|+...+.|+++.++.+++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4556899999999999864 222222 133489999999999999999998864
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.71 E-value=0.6 Score=47.26 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=56.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|++|+|||..+ +-+...+... .+..++|+.-. .-..|+..++.......+.-.. ..|.....+
T Consensus 200 G~l~ii~G~pg~GKT~la-l~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~ 269 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFA-LTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRV--RLGQLTDRD 269 (444)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTC--CGGGCCHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHH--hCCCCCHHH
Confidence 345899999999999765 4444444331 24558887653 3344555554432222111110 122233232
Q ss_pred HHH------HHhCCCcEEEE-----ccHHHHHHHHcCCCCCCCceEEEecchhHhhc
Q 008430 238 QRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 238 ~~~------~~~~~~~ilv~-----T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
+.. .+. ...+.+- |+..+...+..-. .-..+++||||..+.+..
T Consensus 270 ~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 270 FSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCC
Confidence 221 121 2345543 3344433322100 012488999999998764
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.18 E-value=2.7 Score=42.71 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+++.||+|+|||..+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999875
No 170
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.75 E-value=0.32 Score=48.70 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCeEEEEecccchHHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-ccC---CCCccCccEE
Q 008430 374 FPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-ASR---GLDVMGVAHV 446 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~---Gidip~v~~V 446 (565)
++++||.++++.-+..+++.+.. .++.+..++|+.+..++....+.+..|+.+|+|+|.- +.. -++..++++|
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~i 143 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 143 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEE
Confidence 34699999999999999999998 5889999999999999999999999999999999952 211 1334456666
Q ss_pred EE
Q 008430 447 VN 448 (565)
Q Consensus 447 i~ 448 (565)
|.
T Consensus 144 Vi 145 (414)
T 3oiy_A 144 FV 145 (414)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.36 E-value=5.4 Score=38.36 Aligned_cols=53 Identities=19% Similarity=0.401 Sum_probs=30.1
Q ss_pred cHHHHHHHHcCCCCCCCceEEEecchhHhhc---CCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 253 PGRFLDHLQQGNTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 253 ~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~---~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...+...+..... .--+|||||+|.+.. ..+...+..+....+ +. .++++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 3445555543211 234899999999864 346666666666543 34 34455553
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.03 E-value=0.17 Score=42.17 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=16.9
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..+.++++.|++|+|||.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 35668999999999999864
No 173
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.79 E-value=0.2 Score=41.90 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+.++++.|++|+|||.++
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 5568999999999999875
No 174
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.76 E-value=0.36 Score=46.24 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=19.8
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
++++++.||+|+|||..+ ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 568999999999999876 34444444
No 175
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.85 E-value=0.34 Score=41.76 Aligned_cols=120 Identities=13% Similarity=0.195 Sum_probs=70.4
Q ss_pred CHHHHHHHHhHhCCC--CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHHhhcCC
Q 008430 145 TSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~--~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.+-|..++..++... -.+|.+.-|++||...+..++....+ .|.++.+|+|+..-.....+...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~~------- 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDER------- 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTTT-------
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhcC-------
Confidence 456888998887554 37889999999998753333333333 58889999999765443222111
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEEEecchhHhhcCCCHHHHHHHHHhC-CCCC
Q 008430 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKH 301 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~ 301 (565)
+. |. + + |. ..+......+..=+.+|||||-.+. ...+..++... ..+.
T Consensus 102 -l~-----~~---------------t-~-t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~na 150 (189)
T 2l8b_A 102 -LS-----GE---------------L-I-TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNV 150 (189)
T ss_dssp -CS-----SC---------------S-S-ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTC
T ss_pred -cC-----cc---------------e-e-eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCC
Confidence 10 00 0 0 11 1111222333445689999999987 44455554432 3456
Q ss_pred cEEEEEee
Q 008430 302 QTLLFSAT 309 (565)
Q Consensus 302 ~~l~~SAT 309 (565)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 77777544
No 176
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.78 E-value=0.32 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.1
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 008430 155 ALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~ 175 (565)
+..|.-++++||||+|||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346667899999999999763
No 177
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.75 E-value=1.2 Score=50.98 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=63.6
Q ss_pred CeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCCccCccEEEE
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.+++|.|+++.-|...++.|.+. ++.+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||.
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 46999999999888888887753 67889999999999999999999999999999994 6777788888888774
No 178
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.54 E-value=0.47 Score=56.45 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHhHhC------CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 152 MPVALS------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 152 l~~l~~------g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
+..++. ++.+++.||+|+|||..+. .+...... +|.+++|+.....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~-ala~ea~~-------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTL-QVIAAAQR-------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHH-HHHHHHHT-------TTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHH-HHHHHHHH-------cCCcEEEEEccccc
Confidence 555555 5789999999999999873 34433333 37779999876444
No 179
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.33 E-value=4 Score=38.52 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=14.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++-+.++++.|+|||.++
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344677899999999765
No 180
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.29 E-value=0.57 Score=44.56 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=30.0
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
.++|.+|.|+|||..+ +.++...... +.+.+++|+.....+..
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~-----g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQ-----YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHH-----CTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeccchhhH
Confidence 5899999999999876 4444444432 12567999987766643
No 181
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.28 E-value=1.6 Score=47.53 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+.++++.||+|+|||.++
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 357999999999999875
No 182
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.95 E-value=4.8 Score=35.15 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=52.6
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
++++||.++++.-+..+.+.++.. ++.+..+.|+....+....+ .+..+|+|+| +.+.. .+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCccc
Confidence 456999999999999888888764 57788899988765544332 3678999999 23332 456677
Q ss_pred ceEEEec
Q 008430 270 VSFVILD 276 (565)
Q Consensus 270 ~~~iIiD 276 (565)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888763
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.57 E-value=1.7 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=17.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.+++++||+|+|||.++ -.+...+
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHH
Confidence 46999999999999865 3344443
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.20 E-value=1.2 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+++.||+|+|||..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4566899999999999865
No 185
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.66 E-value=3.2 Score=35.05 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=52.8
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..+.|+....+....+ .+..+|+|+| +.+ . ..+++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~~~----~-~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVA----A-RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGG----T-TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-Chh----h-cCCchhc
Confidence 557999999999999888888764 57788899988765544332 3568999999 222 2 3456677
Q ss_pred ceEEEecc
Q 008430 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888644
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.65 E-value=0.5 Score=45.72 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=33.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|.-++|.|++|+|||..+ +-+...+.. .+..++|+... .-..|+..++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHH
Confidence 4556899999999999765 444444433 25668888753 3455565555443
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.50 E-value=0.79 Score=49.72 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999865
No 188
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.39 E-value=0.93 Score=51.48 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCeEEEEecccchHHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccC---CCCccCccEE
Q 008430 374 FPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASR---GLDVMGVAHV 446 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~---Gidip~v~~V 446 (565)
+.++||.++++.-|..+++.|.. .++.+..+||+++..+|...++.+..|+.+|+|+|. .+.. -+++.++++|
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~l 200 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 200 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEE
Confidence 34699999999999999999998 577899999999999999999999999999999995 2211 1445567776
Q ss_pred EE
Q 008430 447 VN 448 (565)
Q Consensus 447 i~ 448 (565)
|.
T Consensus 201 Vi 202 (1104)
T 4ddu_A 201 FV 202 (1104)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 189
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.35 E-value=2.8 Score=37.94 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=40.0
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 446999999999999999888775 37788899987755443333 4578999995
No 190
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.25 E-value=3.6 Score=37.37 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----ccc-CCCCccC
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMG 442 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~ 442 (565)
...++||.|+++.-+..+.+.+... ++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 3456999999999988887776653 7889999999887766554432 478999994 222 2346666
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+.+||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 776664
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.91 E-value=1.3 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.5
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..++|+||||+|||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4446899999999999763
No 192
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.69 E-value=2.5 Score=37.75 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=43.9
Q ss_pred CeEEEEecccchHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
.++||.|+++.-+..+++.+... ++.+..++|+.+..+... .+.++..+|+|+|.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCH
Confidence 46999999999999998888775 678899999987665543 34556778999995
No 193
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.64 E-value=0.74 Score=46.48 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~ 208 (565)
..+++|.|+||+|||... ..++..++.. +..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 467999999999999874 4555555553 567888889888754
No 194
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.57 E-value=5.7 Score=33.51 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=52.0
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+...++.. ++.+..+.|+....+....+ .+..+|+|+|. .+ . ..+++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~-~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LL----A-RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GG----T-TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hh----h-cCCCccc
Confidence 567999999999998888887763 56788889988765544332 35689999992 22 1 3456667
Q ss_pred ceEEEecc
Q 008430 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887643
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.33 E-value=9.9 Score=36.39 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.1
Q ss_pred CceEEEecchhHhh-cCCCHHHHHHHHHhCCCCCcEEEEEeecChHHHHHHHHH
Q 008430 269 RVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (565)
Q Consensus 269 ~~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
..+++++|.+-+.. +......+..+...+.+...++.+.++-..+....+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 35678899876532 222344555555555566667788888766655555544
No 196
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.21 E-value=0.72 Score=46.23 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=30.4
Q ss_pred CccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.|-.+|++++=-.+..+.|... .+..|--++... +...+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4456788887556555555321 000111111110 112357999999999999875
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.98 E-value=1.1 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+++.||+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999865
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.83 E-value=3.6 Score=44.98 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.2
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.++.++++||+|+|||.++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4567999999999999864
No 199
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.07 E-value=1.8 Score=45.59 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=53.2
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHh--hcCCceEEEEcC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF--RNGSTNILVATD 432 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLv~T~ 432 (565)
+.+||.++++.-+....+.|...|+.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3699999999999999999999999999999999999999888888 578899999997
No 200
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.86 E-value=5.6 Score=33.98 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+...+... +..+..+.|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-VC-----ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-SC-----CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-ch-----hcCCCccc
Confidence 567999999999998888777653 57788899988766554333 35789999992 11 22456777
Q ss_pred ceEEEe
Q 008430 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 201
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.69 E-value=2 Score=44.38 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=54.0
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
+++||.++++.-+....+.|...|+.+..++++.+..++..+...+..|..+|+++|.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3699999999999999999999999999999999999999999999999999999995
No 202
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.61 E-value=1.3 Score=42.69 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=29.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHh-----CCCCEEEEccCCChhHHHH
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~-----~g~~~li~a~TGsGKT~~~ 175 (565)
...|++++-...+.+.|...-. .|. -.+.+. ..+.+|+.||+|+|||..+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4578888766666665532100 000 001121 2256999999999999875
No 203
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=83.39 E-value=4.5 Score=30.75 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=44.7
Q ss_pred EEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceE
Q 008430 377 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 377 ~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
.++|....+-..++...++..|+.++.++++...+.|.+-++.|.....+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 678888888889999999999999999999999999999999998765544
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.38 E-value=2.1 Score=42.68 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=17.9
Q ss_pred HHHHHhHh--CCCCEEEEccCCChhHHH
Q 008430 149 AQAMPVAL--SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 149 ~~~l~~l~--~g~~~li~a~TGsGKT~~ 174 (565)
..++..+. .|.-++|+||||+|||..
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 33444433 334588999999999976
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.28 E-value=1.1 Score=40.96 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-+++.|++|+|||..++--+...+... +..++|+.-. +-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHH
Confidence 345689999999999976533233333332 4457777643 334555555443
No 206
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.23 E-value=1.3 Score=43.39 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
..++++.||+|+|||.++
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999875
No 207
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.74 E-value=1.8 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.9
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
...+++.||+|+|||.++
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999875
No 208
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=82.60 E-value=7 Score=34.67 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=52.5
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCcc
Confidence 557999999999999888888764 57788899998776554333 3568999999 2222 3466777
Q ss_pred ceEEEe
Q 008430 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 209
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.40 E-value=3.3 Score=37.25 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=50.0
Q ss_pred CCeEEEEecccchHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-c-----cCCCCccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A-----SRGLDVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidip~ 442 (565)
..++||.|+++.-+..+.+.+... ++.+..++|+....++...+ ...+|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 346999999999999999988774 67788899998876554433 25789999952 1 12345555
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 665554
No 210
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=82.38 E-value=0.86 Score=44.38 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.6
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 5667778887 677999999999874
No 211
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.13 E-value=2.9 Score=38.69 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCCCHHHH-HHHHhHhCCC-----CEEEEccCCChhHHHH
Q 008430 130 PSIMKDIEFHEYTRPTSIQA-QAMPVALSGR-----DLLGCAETGSGKTAAF 175 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~-~~l~~l~~g~-----~~li~a~TGsGKT~~~ 175 (565)
..+.+-|+..|+. +.+- .++...++++ .+++.||.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4677888888864 4442 2344455443 3899999999999876
No 212
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.13 E-value=10 Score=34.56 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=50.8
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-c----c--CCCCccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A----S--RGLDVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~--~Gidip~ 442 (565)
..++||.|+++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+|.- + . .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 346999999999998888877665 78889999998765544333 246789999942 1 1 3456666
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 776665
No 213
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.11 E-value=8.4 Score=35.45 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=49.6
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cc-c-CCCCccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VA-S-RGLDVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~-~Gidip~ 442 (565)
+.++||.++++.-|..+.+.+.+. +..+..++|+......... +..+ .+|+|+|. .+ . .++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 446999999999999998888774 5677788888775544433 3334 78999994 12 1 2456667
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 776654
No 214
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.03 E-value=4.3 Score=35.63 Aligned_cols=72 Identities=26% Similarity=0.277 Sum_probs=49.9
Q ss_pred CCCeEEEEecccchHHHHHHHHHHc--CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----ccc-CCCCccCcc
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMGVA 444 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~v~ 444 (565)
...++||.|+++.-+..+.+.+... ++.+..++|+.........+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3456999999999999999999876 467888898877655443332 2477999995 122 234555666
Q ss_pred EEEE
Q 008430 445 HVVN 448 (565)
Q Consensus 445 ~Vi~ 448 (565)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.84 E-value=1.1 Score=39.87 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=25.8
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
+.-|..++..+..|.-+.+.||.|+|||...
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4456778888888888999999999999753
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.83 E-value=1.4 Score=45.09 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 149 AQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 149 ~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
..++..+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344555667889999999999999864
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.78 E-value=1.1 Score=41.64 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.4
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..+++.|++|+|||.++
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4568999999999999865
No 218
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.77 E-value=1.8 Score=38.32 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHhHhCC----CCEEEEccCCChhHHHHHHHHHHH
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l~~l~~g----~~~li~a~TGsGKT~~~~l~~l~~ 182 (565)
..+.+-|...++. +-.+ ...+..++.+ +.+++.||.|+|||..+ ..++..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 4677777766643 3333 4444444444 24899999999999865 444443
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.76 E-value=0.69 Score=45.99 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=30.7
Q ss_pred CccCCcccCCCCHHHHHHHHHC---CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.|-.+|++++=-+++.+.|... .+..|--++...+ ...+.+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 4557888886555555555321 0111111111111 12356999999999999875
No 220
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.28 E-value=0.76 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=18.8
Q ss_pred HhHhCCCCEEEEccCCChhHHHH
Q 008430 153 PVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 153 ~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
..+..++++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34446789999999999999865
No 221
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=81.11 E-value=1 Score=43.14 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=20.1
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4556678887 677999999999874
No 222
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.08 E-value=2.7 Score=38.07 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccCC-CCccCc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-LDVMGV 443 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idip~v 443 (565)
..++||.++++.-+..+.+.+... ++.+..++|+.... ...+.+..+..+|+|+|. .+..+ +++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 346999999999999999888765 46677778776533 233455667789999993 33333 455556
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 65554
No 223
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.99 E-value=8.5 Score=38.34 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=21.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
-++++++.|+|||.+.. -+ ...+.. .+.+++++.
T Consensus 100 vi~i~G~~GsGKTT~~~-~L-A~~l~~------~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA-KL-ALYYKG------KGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHH-HH-HHHHHT------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHH-HH-HHHHHH------cCCeEEEee
Confidence 36778999999998753 22 233332 255666665
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.73 E-value=1.8 Score=40.86 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++.+++.||+|+|||.++
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999875
No 225
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.30 E-value=10 Score=38.77 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=23.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
.++++|++|+|||.++ ..+...+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~-~kLA~~l~~-------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC-SKLAYYYQR-------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEec
Confidence 3778999999999875 334433333 2566777764
No 226
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.25 E-value=1 Score=43.49 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.9
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4556668887 677999999999874
No 227
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.00 E-value=3 Score=37.41 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=45.6
Q ss_pred CCCeEEEEecccchHHHHHHHHHHc---CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cc-----cCCCCccCc
Q 008430 373 PFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMGV 443 (565)
Q Consensus 373 ~~~~~liF~~s~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidip~v 443 (565)
.+.++||.++++.-+..+.+.+... ++.+..++|+.+...+...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3456999999999999999998874 67888888887655443332 2 3478999994 11 224455556
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 65554
No 228
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.89 E-value=1.3 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.8
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4555668886 677999999999874
No 229
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.88 E-value=1.2 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=20.0
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4556678886 677999999999874
No 230
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=79.76 E-value=1.3 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=20.0
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4556678887 677999999999874
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=79.73 E-value=1.9 Score=38.73 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=20.0
Q ss_pred CCC-CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 157 SGR-DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 157 ~g~-~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
.|+ ++++.++.|+|||.++ +.+...+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a-~~la~~l~~ 32 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAM-LQAAHAQLR 32 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHH-HHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 344 5899999999999986 444444444
No 232
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.69 E-value=1.3 Score=42.59 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=21.1
Q ss_pred HHHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 150 ~~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
..+..++.|.+ ++..|.||||||++.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 36667778987 677999999999874
No 233
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=79.60 E-value=1.3 Score=42.98 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 5566678886 677999999999874
No 234
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=79.51 E-value=1.2 Score=43.20 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556678887 677999999999874
No 235
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=79.49 E-value=1.3 Score=43.32 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.9
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4556668887 677999999999874
No 236
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=79.47 E-value=1.3 Score=43.00 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=19.9
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556668887 677999999999874
No 237
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=79.39 E-value=1.3 Score=43.06 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.2
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 5666678887 677899999999874
No 238
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=79.34 E-value=1.3 Score=43.03 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=20.2
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 5566678887 677899999999874
No 239
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.28 E-value=5.6 Score=34.81 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=48.2
Q ss_pred CCeEEEEecccchHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-c----ccC-CCCccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASR-GLDVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~~-Gidip~ 442 (565)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+..+... .+ .+..+|+|+|. . +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 346999999999999988888764 567888899887554332 22 35678999995 1 222 234555
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666554
No 240
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=79.28 E-value=1.3 Score=43.18 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=20.0
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4556678887 677999999999874
No 241
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=79.15 E-value=1.3 Score=43.86 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.9
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4556668876 677999999999874
No 242
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.14 E-value=1.2 Score=41.43 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+.+++.||+|+|||.++
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 346899999999999875
No 243
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=79.00 E-value=1.8 Score=38.90 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~ 215 (565)
.|.-+++.|++|+|||..+ ..++..+... +..++++.... ...+....+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~ 71 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS-LHFIAKGLRD-------GDPCIYVTTEE-SRDSIIRQAK 71 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH-HHHHHHHHHH-------TCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHHHHC-------CCeEEEEEccc-CHHHHHHHHH
Confidence 4566889999999999764 3333333322 34567665322 2334444443
No 244
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.86 E-value=6 Score=38.66 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=53.8
Q ss_pred CCeEEEEecccchHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cc-----cCCCCccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidip~ 442 (565)
..++||.|+++.-+..+++.+.+. ++.+..++|+.+..+.... +..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 346999999999999998888775 7889999999886655443 4457778999994 22 23456677
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 777764
No 245
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=78.84 E-value=1.4 Score=42.73 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.9
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 6677778887 677999999999875
No 246
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.54 E-value=1.4 Score=42.72 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.1
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6777789987 677899999999875
No 247
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=78.53 E-value=1.3 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=20.1
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 5566678886 677999999999874
No 248
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.30 E-value=3.8 Score=39.09 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=33.3
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|.-++|.|++|+|||..+ +-+...+.. .+..++|+.-. .-..|+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~-l~ia~~~a~-------~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFA-LKQAKNMSD-------NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 4556899999999999765 444444333 24568888754 4455566665544
No 249
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.11 E-value=2 Score=42.49 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=29.0
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
.+.+++|.|+||+|||...-. ++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcCH
Confidence 456899999999999986533 3333333 25668888787654
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.11 E-value=2.4 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++.++++|++|+|||.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445889999999999875
No 251
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.05 E-value=1.6 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.8
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 6677778987 677999999999875
No 252
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.86 E-value=1.4 Score=43.19 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=20.0
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4556678876 677999999999874
No 253
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.75 E-value=2.3 Score=43.06 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++++|+.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999876
No 254
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.69 E-value=1.9 Score=44.37 Aligned_cols=39 Identities=21% Similarity=0.009 Sum_probs=25.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHh-HhCCCCEEEEccCCChhHHH
Q 008430 134 KDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~l~~-l~~g~~~li~a~TGsGKT~~ 174 (565)
..+...|. +.+.+...+.. +..|..++++||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444442 34444444443 34777899999999999975
No 255
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.46 E-value=1.4 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.7
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 4555668886 677999999999874
No 256
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=77.33 E-value=1.6 Score=43.75 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||+|||++.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4556678887 677999999999874
No 257
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.04 E-value=4.9 Score=34.80 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=42.9
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH----HHhCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.++.. ++.+..+.|+....+... ...+..+|+|+| ..+. ..+++..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~-----~Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAA-----RGLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-C-----------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-Chhh-----cCCCccc
Confidence 567999999999998888877763 567888888765443222 224678999999 2322 2345667
Q ss_pred ceEEEe
Q 008430 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 777776
No 258
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.99 E-value=1.9 Score=41.89 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
|.-++|.||+|+|||..+ +.++..+.. .+.+++|+.....+
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~-------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK-------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEeccccc
Confidence 345889999999999865 445544443 25568888765544
No 259
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=76.88 E-value=1.7 Score=41.37 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.2
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
....+++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4467999999999999875
No 260
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.88 E-value=0.53 Score=44.16 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=25.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHH-HHHHHHhHh--CCCCEEEEccCCChhHHHH
Q 008430 120 IESFTDMCLHPSIMKDIEFHEYTRPTSI-QAQAMPVAL--SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~-Q~~~l~~l~--~g~~~li~a~TGsGKT~~~ 175 (565)
-..|++++-.+++.+.|...=. .|+ ..+++..+- -.+.+++.||.|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3567777666666665532110 111 112233221 1234999999999999864
No 261
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.81 E-value=1 Score=39.61 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+-+++.||||+|||.++
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556899999999999765
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=76.75 E-value=1.2 Score=38.65 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999864
No 263
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.70 E-value=1.7 Score=43.05 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred HHHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 150 ~~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
..+..++.|.+ ++..|.||||||++.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36777788987 677899999999874
No 264
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=76.54 E-value=31 Score=35.61 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCC
Q 008430 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~ 268 (565)
.+.++||.++++.-+..+++.+++.+.. ++.+..+.|+....+....+ .+..+|+|||. .+. ..+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh-cCCCcc
Confidence 3668999999999999999999887642 57788889988765544332 46799999993 222 356777
Q ss_pred CceEEEecc
Q 008430 269 RVSFVILDE 277 (565)
Q Consensus 269 ~~~~iIiDE 277 (565)
++++||.-.
T Consensus 410 ~v~~VI~~~ 418 (563)
T 3i5x_A 410 NVHEVLQIG 418 (563)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEEC
Confidence 788888654
No 265
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=76.48 E-value=13 Score=31.54 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=52.2
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..+.|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CC-----STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-ch-----hcCcchhh
Confidence 457999999999999888888764 57788889988765544332 35789999993 22 12455667
Q ss_pred ceEEEecc
Q 008430 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 78887644
No 266
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.48 E-value=1.5 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667778887 677999999999874
No 267
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=76.41 E-value=1.8 Score=42.43 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=20.7
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 6677778887 677999999999874
No 268
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=76.33 E-value=1.3 Score=43.42 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.4
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445668887 677999999999874
No 269
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.15 E-value=1.6 Score=41.38 Aligned_cols=15 Identities=40% Similarity=0.355 Sum_probs=13.5
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
++|+||||+|||..+
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 788999999999875
No 270
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.06 E-value=1.3 Score=39.15 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.6
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.++.++++|++|+|||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5677999999999999875
No 271
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.01 E-value=1.6 Score=41.23 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999875
No 272
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.81 E-value=4.4 Score=37.09 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=29.9
Q ss_pred CccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHhHh--CCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~l~~l~--~g~~~li~a~TGsGKT~~~ 175 (565)
.|..+|+++.-.+.....++..-. ... ...++..+- -.+.+++.||+|+|||..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 344678888666655555432110 000 012233221 1234899999999999864
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=75.69 E-value=1.5 Score=42.21 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+-++|+||||+|||.++
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999875
No 274
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.39 E-value=1.6 Score=41.42 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-++|+||||+|||.++
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 3688999999999875
No 275
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.29 E-value=3.6 Score=41.44 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999875
No 276
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.15 E-value=2.3 Score=41.44 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=28.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L 206 (565)
.|+-++|.|+.|+|||..+ +.++..+.. .+.+++|+.....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~~~-------~g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeCCCCc
Confidence 3456899999999999876 444444443 25568888764433
No 277
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.01 E-value=11 Score=37.80 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccC-CCCccCc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMGV 443 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~v 443 (565)
..++||.|++++-|..+.+.+.+. ++.+..++|+.+..+....+ ....+|+|+|. .+.+ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 457999999999999998888764 56788899998866544333 24578999994 2333 3456677
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 77764
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.86 E-value=2 Score=42.19 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=16.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|..++++||||+|||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999763
No 279
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.73 E-value=21 Score=32.27 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=48.3
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-c----c-CCCCccCc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A----S-RGLDVMGV 443 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~-~Gidip~v 443 (565)
..++||.|+++.-+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|.- + . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 347999999999999888887664 56778888887655443322 245789999952 2 1 23455666
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66654
No 280
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=74.61 E-value=2 Score=42.08 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.4
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 008430 155 ALSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~ 174 (565)
+..|..++++||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44788999999999999975
No 281
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=74.35 E-value=5.5 Score=45.69 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=44.0
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcC----CCCCCCCCeEEEEccchhhHHHHHHHHHHHhh
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQT----PVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~----~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..+|.|.-|||||.+..--++..+.... ....-...++|+|+=|+.-+.++.+++++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 4599999999999987666666665321 00011245699999999999999999988764
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.04 E-value=1.5 Score=37.98 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++.++++|++|+|||.++
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.93 E-value=12 Score=37.07 Aligned_cols=17 Identities=18% Similarity=-0.033 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.-++|.|+.|+|||...
T Consensus 179 ei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 179 SITELFGEFRTGKSQLC 195 (400)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEEcCCCCChHHHH
Confidence 45889999999999765
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.86 E-value=12 Score=37.29 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=25.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--cchhhHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQ 208 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--P~~~L~~ 208 (565)
.++++++.|+|||.+. .-+...+... .|.+++++. |.+..+.
T Consensus 102 vI~ivG~~GvGKTT~a-~~LA~~l~~~------~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV-GKLGKFLREK------HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT------SCCCEEEEECCCSSTTHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHh------cCCeEEEEecCCCCccHH
Confidence 4677899999999876 3333333331 156677765 4444433
No 285
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.79 E-value=1.6 Score=38.52 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=15.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999863
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.72 E-value=2.9 Score=40.57 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
|+-++|.|+.|+|||..+ +.++..+.. .+.+++|+.-..
T Consensus 61 G~iv~I~G~pGsGKTtLa-l~la~~~~~-------~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVA-LHAVANAQA-------AGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEECCC
Confidence 456899999999999876 444444433 255688887543
No 287
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.70 E-value=4.9 Score=39.36 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
..++++.||+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999875
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.38 E-value=2.2 Score=39.33 Aligned_cols=15 Identities=40% Similarity=0.197 Sum_probs=13.4
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
++|+|+||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 689999999999875
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.13 E-value=1.5 Score=37.75 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.5
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.++.+++.|++|+|||.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4567999999999999875
No 290
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=72.96 E-value=5.2 Score=35.02 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=18.2
Q ss_pred CcEEEEccHHHHHHHHcCCCCCCCceEEEecchh
Q 008430 246 VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 246 ~~ilv~T~~~l~~~l~~~~~~~~~~~~iIiDE~H 279 (565)
.+++-+..+.+...+..- .+.+++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 445555556665555431 2358999999654
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=72.79 E-value=1.7 Score=38.65 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+-++++||+|+|||.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4556889999999999864
No 292
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=72.71 E-value=44 Score=34.66 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=57.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCC
Q 008430 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~ 268 (565)
.+.++||.++++.-+..+++.+++.+.. ++.+..+.|+....+....+ .+..+|+|||. .+. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-cCCCcc
Confidence 3668999999999999999999887642 57788889988765543332 46789999993 222 356777
Q ss_pred CceEEEecch
Q 008430 269 RVSFVILDEA 278 (565)
Q Consensus 269 ~~~~iIiDE~ 278 (565)
++++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8888887553
No 293
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.64 E-value=3.5 Score=39.50 Aligned_cols=64 Identities=22% Similarity=0.117 Sum_probs=34.4
Q ss_pred HHHhHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhh-HHHHHHHHHH
Q 008430 151 AMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL-AQQIEKEVKA 216 (565)
Q Consensus 151 ~l~~l~~-----g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L-~~Q~~~~~~~ 216 (565)
.+..++. |.-+++.|++|+|||..+ +.++..+..... ..+.+.+++|+.-...+ ..++.+.++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 345899999999999865 333332211100 00114578888765432 3444444433
No 294
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=72.59 E-value=3.2 Score=40.53 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=27.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchh
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~ 205 (565)
|.-++|.|++|+|||..+ +.++..+... +..++|+.....
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~~~-------g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQKA-------GGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHHHC-------CCeEEEEECCCC
Confidence 456889999999999865 5555544432 456888876543
No 295
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=72.34 E-value=3.1 Score=36.91 Aligned_cols=36 Identities=17% Similarity=-0.024 Sum_probs=23.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (565)
.|.-+++.|++|+|||..+.. ++. . .+..++++.-.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~-l~~---~-------~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ-TGL---L-------SGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHH---H-------HCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHH---H-------cCCcEEEEECC
Confidence 345689999999999986533 222 1 24567777643
No 296
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.13 E-value=3.1 Score=39.38 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||.++
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999875
No 297
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.01 E-value=3.8 Score=38.60 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=24.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
.|.-++|.|++|+|||.... -+...+... .|..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~-~ia~~~~~~------~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVR-QQALQWGTA------MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHH-HHHHHHHHT------SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHHH------cCCeEEEEeC
Confidence 56678999999999997653 233332221 2445777654
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.96 E-value=6 Score=36.83 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=33.1
Q ss_pred hHhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCC-C--CCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-R--GDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 154 ~l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~--~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
-+..|.-++|.|+.|+|||..+.. ++..+....... . ..+..++|+.-... ..++...+..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~-l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ-LAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHAL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH-HHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH-HHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHHH
Confidence 344677799999999999986533 333332210000 0 01345777765433 34444444443
No 299
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.95 E-value=1.8 Score=41.78 Aligned_cols=19 Identities=42% Similarity=0.754 Sum_probs=16.8
Q ss_pred hCCCCEEEEccCCChhHHH
Q 008430 156 LSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~ 174 (565)
..|..++++||||+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999975
No 300
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=71.76 E-value=17 Score=35.76 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=53.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCC
Q 008430 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~ 268 (565)
.+.++||.++++.-+..+++.+++. ++.+..+.|+....+....+ .+..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcc
Confidence 4678999999999999888887763 57788899988765544332 36789999993 333 346777
Q ss_pred CceEEEe
Q 008430 269 RVSFVIL 275 (565)
Q Consensus 269 ~~~~iIi 275 (565)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888885
No 301
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=71.65 E-value=14 Score=37.03 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=60.4
Q ss_pred ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHc-CC---ceeEecCCCCHHHHHHHHHHhhcC
Q 008430 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GL---HAVALHGGRNQSDRESALRDFRNG 423 (565)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g 423 (565)
....|....+..+..... .+..++||.|+++.-+....+.+.+. +. .+..+||+....++.....
T Consensus 32 tG~GKT~~~~~~~~~~~~------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 100 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLT------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA----- 100 (494)
T ss_dssp TTSCHHHHHHHHHHHHHH------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHh------cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----
Confidence 344565544444443322 12346999999999999999888876 55 8899999998877655443
Q ss_pred CceEEEEcC-ccc-----CCCCccCccEEEE
Q 008430 424 STNILVATD-VAS-----RGLDVMGVAHVVN 448 (565)
Q Consensus 424 ~~~vLv~T~-~~~-----~Gidip~v~~Vi~ 448 (565)
..+|+|+|. .+. ..+...++++||.
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 356999994 222 2456667777775
No 302
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.62 E-value=4.3 Score=38.52 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
|.-+.++||+|+|||... ..+..++.. .++++++..
T Consensus 102 g~vi~lvG~nGsGKTTll--~~Lagll~~------~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI--AKLGRYYQN------LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHH--HHHHHHHHT------TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHH--HHHHHHHHh------cCCEEEEEe
Confidence 445788999999999763 344444432 244566554
No 303
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.61 E-value=1.4 Score=38.44 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=16.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|.-++++|+.|+|||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999864
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.49 E-value=1.8 Score=36.85 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.4
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+++.|++|+|||.++
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.43 E-value=1.9 Score=38.17 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.8
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|+-++++|++|+|||.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35677999999999999864
No 306
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=71.15 E-value=1.9 Score=36.95 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
++-++++|++|+|||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 307
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=71.06 E-value=3 Score=34.78 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=17.2
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.+|.||+|+|||.+ +.++..++
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 68999999999986 55555554
No 308
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=70.93 E-value=2 Score=37.25 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..++++|++|+|||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999875
No 309
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.78 E-value=5.3 Score=35.55 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-c-----cCCCCccCc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A-----SRGLDVMGV 443 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidip~v 443 (565)
..++||.|+++.-+..+.+.+... ++.+..++|+.+..+.... +. +.+|+|+|.- + ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 346999999999999888888764 6778888988765443322 22 3789999952 1 234445555
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 55554
No 310
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.70 E-value=2.6 Score=41.60 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.1
Q ss_pred EEEEccCCChhHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~ 182 (565)
++|+||||+|||.++ ..+...
T Consensus 5 i~i~GptgsGKttla-~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS-IQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHHH-HHHHHH
T ss_pred EEEECcchhhHHHHH-HHHHHH
Confidence 678999999999876 444443
No 311
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=70.57 E-value=2 Score=37.88 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|.-+.+.|++|+|||.++
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999864
No 312
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.32 E-value=2.2 Score=37.61 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.3
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+-++++||+|+|||.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677899999999999864
No 313
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=70.30 E-value=3.9 Score=46.89 Aligned_cols=56 Identities=5% Similarity=-0.035 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeccc-chHHHHHHHHHHcCCceeEecC
Q 008430 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK-TRCDEVSEALVAEGLHAVALHG 406 (565)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~-~~a~~l~~~l~~~~~~~~~~~~ 406 (565)
+.......+...+...... ......-+.|.|.+. ..+..+.+.|.+.|+++....+
T Consensus 319 ~~~~Ea~~ia~~I~~l~~~---~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 319 NRRAELEGIAREIHALVRE---KGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp SHHHHHHHHHHHHHHHHHT---SCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred ChHHHHHHHHHHHHHHHHh---cCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 3334445555555443321 111222378888887 4889999999999999776544
No 314
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.26 E-value=4.2 Score=40.94 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=32.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-++|.|++|+|||..+ +-++..+..+ +..++|+.-. .-..|+..++..
T Consensus 196 ~G~liiIaG~pG~GKTtla-l~ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHH-HHHHHHHHHT-------TCEEEEECSS-SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHc-------CCEEEEEECC-CCHHHHHHHHHH
Confidence 3445899999999999865 4444444432 5568888754 334455555444
No 315
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=70.19 E-value=0.91 Score=43.17 Aligned_cols=9 Identities=33% Similarity=0.209 Sum_probs=6.1
Q ss_pred CEEEEccCC
Q 008430 160 DLLGCAETG 168 (565)
Q Consensus 160 ~~li~a~TG 168 (565)
++-+.|.||
T Consensus 128 ~i~i~getg 136 (319)
T 1lsh_B 128 RAMLEASTG 136 (319)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEee
Confidence 466777777
No 316
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=70.05 E-value=8.2 Score=38.83 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.0
Q ss_pred hHhCCCCEEEEccCCChhHHHHH
Q 008430 154 VALSGRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 154 ~l~~g~~~li~a~TGsGKT~~~~ 176 (565)
.+.+|+..++.|+.|+|||....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHH
Confidence 34478899999999999998753
No 317
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=70.05 E-value=2.7 Score=40.18 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.++|+||||+|||.++
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 318
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=69.91 E-value=4.1 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
.-+.++||+|+|||... ..+..++.. .++++++..
T Consensus 101 ~vi~lvG~nGsGKTTll--~~Lag~l~~------~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL--GKLAHRLKN------EGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHHH------TTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHH--HHHHHHHHH------cCCeEEEEe
Confidence 34789999999999864 334444432 244566654
No 319
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.84 E-value=5.4 Score=40.47 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=17.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.++|+.||+|+|||.++ -.+...+
T Consensus 202 ~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCeEEECCCCCCHHHHH-HHHHHHH
Confidence 47999999999999875 3333333
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=69.30 E-value=2.5 Score=40.65 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-++|+||||+|||.++
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999876
No 321
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.00 E-value=4.4 Score=38.46 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-++++|++|+|||.+.
T Consensus 106 vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3778999999999865
No 322
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.82 E-value=2.5 Score=35.93 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999864
No 323
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.74 E-value=2.6 Score=37.76 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|+-+.++||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999975
No 324
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=68.70 E-value=15 Score=34.64 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ..+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccc
Confidence 556999999999888777776653 67888899987765544333 4678999999 2222 3466778
Q ss_pred ceEEEecc
Q 008430 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.=+
T Consensus 97 v~~VI~~d 104 (300)
T 3i32_A 97 VDLVVHYR 104 (300)
T ss_dssp CSEEEESS
T ss_pred eeEEEEcC
Confidence 88888533
No 325
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=68.44 E-value=8.8 Score=43.36 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=55.2
Q ss_pred CeEEEEecccchHHHHHHHHHHc----CC----ceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-cccCCCC-ccCcc
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLD-VMGVA 444 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gid-ip~v~ 444 (565)
.++||.++++.-|..+++.+... ++ .+..++|+.+..++....+.+.+ .+|+|+|+ .+..-+. +..++
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~ 177 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFD 177 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCS
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCC
Confidence 46999999999998888888754 56 78899999999888888888877 88999995 2222221 55677
Q ss_pred EEEE
Q 008430 445 HVVN 448 (565)
Q Consensus 445 ~Vi~ 448 (565)
+||.
T Consensus 178 ~lVi 181 (1054)
T 1gku_B 178 FIFV 181 (1054)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=68.36 E-value=2.4 Score=37.26 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+.+.||+|+|||.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5666889999999999863
No 327
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=68.35 E-value=2.7 Score=44.15 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.6
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
++|+.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 7999999999999864
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=68.30 E-value=5 Score=36.39 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.7
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|.-+.+.||+|+|||...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHH
Confidence 35677899999999999865
No 329
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.09 E-value=4.1 Score=36.25 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCeEEEEecccchHHHHHHHHHHc--------CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccC-CCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLD 439 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gid 439 (565)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+..+.. +.+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 346999999999999888887664 56778888887533221 111 24578999994 2222 234
Q ss_pred ccCccEEEE
Q 008430 440 VMGVAHVVN 448 (565)
Q Consensus 440 ip~v~~Vi~ 448 (565)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 455555443
No 330
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=67.73 E-value=5.7 Score=41.06 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=19.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 159 RDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
-++||.|.||||||.+. -.++..++.
T Consensus 215 pHlLIaG~TGSGKS~~L-~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV-NAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHH-HHHHHHHHH
Confidence 46999999999999875 444444443
No 331
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=67.35 E-value=9.1 Score=38.30 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
.+++|+.||+|+|||.++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 357999999999999875
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.22 E-value=2.8 Score=36.55 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
|-++|+||.|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999753
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=66.99 E-value=5.8 Score=34.15 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445889999999999875
No 334
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.95 E-value=2.6 Score=45.75 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=32.3
Q ss_pred CccCCcccCCCCHHHHHHHHHC-CCCCCCHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 118 APIESFTDMCLHPSIMKDIEFH-EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~f~~~~l~~~i~~~l~~~-~~~~~~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.|-..|++++.-.+..+.|... .+...+|.+-..+ .+...+.+|+.||.|+|||+++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 3446788887777777777443 1111111110000 0112346999999999999865
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.64 E-value=2.9 Score=36.23 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+-+.+.||+|+|||.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44789999999999863
No 336
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.63 E-value=5.5 Score=38.09 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=21.4
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
-+++++++|+|||.+... + ...+.. .+.+++++.
T Consensus 107 vI~ivG~~G~GKTT~~~~-L-A~~l~~------~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK-M-ANYYAE------LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHH-H-HHHHHH------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-H-HHHHHH------CCCeEEEEe
Confidence 477899999999987532 2 223332 255676664
No 337
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.30 E-value=3.6 Score=40.00 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.8
Q ss_pred CCCC--EEEEccCCChhHHHH
Q 008430 157 SGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~--~li~a~TGsGKT~~~ 175 (565)
.|.+ ++..|.||||||++.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 688999999999874
No 338
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=66.14 E-value=2.4 Score=36.24 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+.++||.|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556889999999999864
No 339
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=65.94 E-value=2.8 Score=36.27 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.91 E-value=7.8 Score=33.02 Aligned_cols=24 Identities=21% Similarity=0.075 Sum_probs=16.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
-+.++|+.|+|||... ..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhH
Confidence 3678999999999764 33444443
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.80 E-value=2.7 Score=35.61 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999875
No 342
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=65.69 E-value=2.8 Score=35.88 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.4
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.++
T Consensus 5 I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEecCCCCCHHHHH
Confidence 689999999999865
No 343
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.65 E-value=7 Score=39.95 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=18.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
+.+++|.|+||||||.+. -.++..++
T Consensus 167 ~pHlLIaG~TGSGKSt~L-~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV-NAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999864 33443333
No 344
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=65.59 E-value=1.8 Score=41.91 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
..++|+.||+|+|||.++
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999865
No 345
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=65.55 E-value=5.4 Score=38.77 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=21.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
-+.++|++|+|||... ..+..++.. .++++++..
T Consensus 159 vi~lvG~nGsGKTTll--~~Lag~l~~------~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL--GKLAHRLKN------EGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHH--HHHHHHHHH------TTCCEEEEC
T ss_pred EEEEEcCCCChHHHHH--HHHHhhccc------cCCEEEEec
Confidence 4789999999999864 334444432 244566654
No 346
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=65.37 E-value=9.8 Score=32.66 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 347
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=65.25 E-value=3 Score=36.61 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+++.|+.|+|||.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999864
No 348
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=64.69 E-value=2.6 Score=35.96 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
|..++++|+.|+|||.++
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999864
No 349
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.15 E-value=3.3 Score=37.69 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=45.7
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccC---CCCcc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR---GLDVM 441 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~---Gidip 441 (565)
+.++||.++++.-+..+++.+.+. ++.+..++|+..... .......+..+|+|+|. .+.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 446999999999999999988875 566666665432111 11122345678999993 1212 35666
Q ss_pred CccEEEE
Q 008430 442 GVAHVVN 448 (565)
Q Consensus 442 ~v~~Vi~ 448 (565)
++.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 6666554
No 350
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.92 E-value=3.3 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=16.5
Q ss_pred hHhCCCCEEEEccCCChhHHHH
Q 008430 154 VALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 154 ~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.+..|+-+.+.||.|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4557777899999999999753
No 351
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.87 E-value=4.2 Score=34.89 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=17.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
-.+|+|++|+|||.+ +.++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 468999999999976 44555544
No 352
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.68 E-value=4.6 Score=35.57 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
.++.|+.|||||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 689999999999865
No 353
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=63.33 E-value=5.6 Score=37.96 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHhHhCC-----CCEEEEccCCChhHHHHH
Q 008430 151 AMPVALSG-----RDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 151 ~l~~l~~g-----~~~li~a~TGsGKT~~~~ 176 (565)
.++.++.| .-++|.|++|+|||..++
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 45555533 358999999999998653
No 354
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=63.10 E-value=35 Score=36.17 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.++.. ++.+..+.|+....+.... ..+..+|+|||. .+ ...+.+.+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 678999999999988888877764 5677778887765544333 236789999993 22 23567778
Q ss_pred ceEEEecchhHh
Q 008430 270 VSFVILDEADRM 281 (565)
Q Consensus 270 ~~~iIiDE~H~~ 281 (565)
+++||+-+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999888753
No 355
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.96 E-value=5.7 Score=39.74 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=22.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
.++++|++|+|||.++ ..+...+... |.+++++.
T Consensus 101 vI~ivG~~GvGKTTla-~~La~~l~~~-------G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA-AKLARYIQKR-------GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHH-HHHHHHHHHH-------HCCEEEEC
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEe
Confidence 5889999999999875 3333333332 55677765
No 356
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.92 E-value=4 Score=37.45 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+.+++.|++|+|||.++
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999874
No 357
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=62.58 E-value=24 Score=34.43 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+++.+.+. +..+..++|+....+....+ .+..+|+|+|. .+ ...+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccC
Confidence 567999999999999888888774 56788888988766544333 35689999993 22 23567778
Q ss_pred ceEEEe
Q 008430 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 899885
No 358
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=62.45 E-value=25 Score=34.00 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=54.9
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+++.++.. +..+..+.|+....+....+ .+..+|+|+|. .+ ...+++.+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 567999999999998888888764 56788888988766544333 35688999993 22 23567778
Q ss_pred ceEEEecchh
Q 008430 270 VSFVILDEAD 279 (565)
Q Consensus 270 ~~~iIiDE~H 279 (565)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999875544
No 359
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=62.25 E-value=4.7 Score=39.48 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
.++.|+||+|||.+ +.++..+
T Consensus 28 ~vi~G~NGaGKT~i--leAI~~~ 48 (371)
T 3auy_A 28 VAIIGENGSGKSSI--FEAVFFA 48 (371)
T ss_dssp EEEEECTTSSHHHH--HHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHH
Confidence 68999999999986 5666653
No 360
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=62.12 E-value=3.4 Score=38.56 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||..+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 4899999999999864
No 361
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=61.99 E-value=3.8 Score=36.74 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.2
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|+-++|+||.|+|||...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35677899999999999863
No 362
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=61.93 E-value=6.3 Score=30.16 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCceeEecCCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGR 408 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~ 408 (565)
..++++||.+-..+...+..|...|+++..+.|++
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34699999998899999999999999888888875
No 363
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=61.91 E-value=5.4 Score=35.16 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=18.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
-.+|.||+|+|||.+ +.++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 368999999999976 555665554
No 364
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=61.68 E-value=2.7 Score=36.23 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
|..+++.|+.|||||.++
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999875
No 365
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=61.49 E-value=10 Score=38.64 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+++.||+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34999999999999865
No 366
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=61.36 E-value=6 Score=30.68 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCceeEecCCCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..++++||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 446999999988899999999999999899998864
No 367
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=61.30 E-value=6.7 Score=30.22 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=30.7
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCceeEecCCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGR 408 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~ 408 (565)
..+++++|.+-..+...+..|.+.|+.+..+.||+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34699999998889999999999999988888875
No 368
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=61.27 E-value=5.1 Score=43.15 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=20.4
Q ss_pred HHHhHhCCCC--EEEEccCCChhHHHH
Q 008430 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 ~l~~l~~g~~--~li~a~TGsGKT~~~ 175 (565)
.+..+++|.+ ++..|.||||||++.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 6677788987 566899999999874
No 369
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=61.20 E-value=6.1 Score=30.07 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCCceeEecCCCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..++++||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 346999999998999999999999998888888753
No 370
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=61.10 E-value=26 Score=30.44 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=34.3
Q ss_pred CCeEEEEecccchHHH-HHHHHHH---cCCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q 008430 374 FPLTIVFVERKTRCDE-VSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~-l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
..++||+|+++.-+.. +.+.+.. .++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 4579999999888777 5555544 3678888888765443322221 2467888884
No 371
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.97 E-value=7.2 Score=39.58 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=21.6
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
-+.++|++|+|||... ..+..++.. .++++++.
T Consensus 295 VI~LVGpNGSGKTTLl--~~LAgll~~------~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI--GKLARQFEQ------QGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHHHH------TTCCEEEE
T ss_pred EEEEECCCcccHHHHH--HHHHHHhhh------cCCeEEEe
Confidence 3789999999999864 334444432 24556665
No 372
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=60.64 E-value=3.8 Score=35.94 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.-++++|+.|+|||.++
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999865
No 373
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=60.50 E-value=10 Score=34.86 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=31.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~~ 217 (565)
|..+++.+.+|+||| ++.+-++..... +|-+++|++-. +-..++...++.+
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~-------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLK-------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHH-------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHH-------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 345788877777777 344555554444 36678888753 3445566666554
No 374
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.49 E-value=4.3 Score=35.22 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..+++.|+.|+|||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999875
No 375
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.46 E-value=11 Score=40.74 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.||||+|||.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999876
No 376
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=60.36 E-value=30 Score=33.62 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+++.++.. +..+..+.|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 567999999999999888888775 56788888888765543332 35689999993 11 23466777
Q ss_pred ceEEEec
Q 008430 270 VSFVILD 276 (565)
Q Consensus 270 ~~~iIiD 276 (565)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888853
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.35 E-value=4 Score=39.27 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999864
No 378
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=60.28 E-value=3.6 Score=36.13 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+.+.|+.|+|||.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566889999999999864
No 379
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=60.11 E-value=9.7 Score=35.89 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=14.4
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
++++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999865
No 380
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=59.82 E-value=78 Score=26.64 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHHHhhhhcCCCCCeEEEEecccchHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHhhcCCceEE
Q 008430 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
..+....+.+.+.. ...+ ...+-|.|.+..++..+.+.|...|+++..+.++.. .+ .-.|.
T Consensus 43 ~~~e~~~i~~~I~~-~~~g------~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~ 103 (174)
T 3dmn_A 43 FEAGVDQVVDQLAM-NDSE------RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVI 103 (174)
T ss_dssp HHHHHHHHHHHHHH-HHHT------TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEE
T ss_pred HHHHHHHHHHHHHH-hccC------CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeE
Confidence 34445555555554 2111 234888899999999999999999998877765432 12 23588
Q ss_pred EEcCcccCCCCccCccEEEEcCCC
Q 008430 429 VATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
|+|--...|+.+ +.||.+++.
T Consensus 104 v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 104 VVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp EEEGGGCTTCCE---EEEEEETCB
T ss_pred EEEccccCCcCC---CEEEEecCC
Confidence 999999999887 677777754
No 381
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=59.62 E-value=4 Score=35.29 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.-+++.|+.|+|||.++
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999875
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=59.43 E-value=4.2 Score=36.51 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|++|+|||.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999875
No 383
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.43 E-value=4.6 Score=34.42 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999875
No 384
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=59.43 E-value=10 Score=38.06 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=45.9
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEccHHHHHHHHcCCCCCCCceEE
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T~~~l~~~l~~~~~~~~~~~~i 273 (565)
+.++||++|+++-+.++++.+++. ++.+..+.|............+..+|+|+|. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 567999999999999888888774 5678888886554444444456799999993 222 235566 7777
Q ss_pred E
Q 008430 274 I 274 (565)
Q Consensus 274 I 274 (565)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 385
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=59.30 E-value=4.2 Score=35.17 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-++++|+.|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999864
No 386
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=59.17 E-value=12 Score=37.46 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=40.9
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEEc
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 252 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ilv~T 252 (565)
+.++||++|++.-+..+++.+++. +..+..+.|+...........+..+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 456999999999999888888775 567888888754333333445779999999
No 387
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=59.15 E-value=6.2 Score=41.54 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=18.6
Q ss_pred hHhCCCCEEEEccCCChhHHHH
Q 008430 154 VALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 154 ~l~~g~~~li~a~TGsGKT~~~ 175 (565)
.+..|..+++.||+|+|||.++
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3457789999999999999864
No 388
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.08 E-value=6.5 Score=40.27 Aligned_cols=52 Identities=8% Similarity=0.018 Sum_probs=32.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-++|.|++|+|||..+ +-++..+... .+..++|+.-. +-..|+..++..
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGTA------MGKKVGLAMLE-ESVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTTT------SCCCEEEEESS-SCHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHHh------cCCcEEEEecc-CCHHHHHHHHHH
Confidence 4455899999999999865 4444443321 25568888753 334566655543
No 389
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=59.07 E-value=22 Score=34.45 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-c----c-cCCCCccCc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----A-SRGLDVMGV 443 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~-~~Gidip~v 443 (565)
..++||.|+++.-+..+.+.+... ++.+..++|+....+....+. ..+|+|+|. . + ...+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 457999999999998888887663 678889999988766555443 356999993 1 1 224455667
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 164 ~~vIi 168 (394)
T 1fuu_A 164 KMFIL 168 (394)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77765
No 390
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=58.96 E-value=34 Score=32.57 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=52.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCC
Q 008430 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~ 268 (565)
.+.++||.++++.-+..+.+.+++. +..+..+.|+....+....+ .+..+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCcc
Confidence 3567999999999999888888764 56788888887765544332 35688999993 2221 35566
Q ss_pred CceEEEecc
Q 008430 269 RVSFVILDE 277 (565)
Q Consensus 269 ~~~~iIiDE 277 (565)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 788888643
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=58.90 E-value=5.2 Score=35.40 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=20.7
Q ss_pred CHHHHHHHHhHhCCCCEEEEccCCChhHHHH
Q 008430 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 145 ~~~Q~~~l~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
++.++... .+..|.-+++.|+.|+|||.++
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444442 3345667889999999999865
No 392
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.66 E-value=5.2 Score=38.70 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHhHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 151 AMPVALSG-----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 151 ~l~~l~~g-----~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
.+..++.| .-++|.|++|+|||..+ +.++..... +....+.+.+++|+.-..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~-~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQL-PGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTS-CBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhc-ccccCCCCCeEEEEECCC
Confidence 45666543 34889999999999865 333332111 100011356788887654
No 393
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=58.61 E-value=25 Score=34.48 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHHhHh---CCCCEEEEccCCChhHHHH
Q 008430 148 QAQAMPVAL---SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 148 Q~~~l~~l~---~g~~~li~a~TGsGKT~~~ 175 (565)
=..+|..+. .|+.++|.|++|+|||...
T Consensus 161 GiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 161 TARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 344555544 6889999999999999875
No 394
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=58.60 E-value=8.3 Score=28.87 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.7
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCceeEecCCCC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
.++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 56999999988899999999999999777888864
No 395
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.50 E-value=4 Score=38.34 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-++++|+.|+|||.++
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999865
No 396
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.45 E-value=7.7 Score=45.68 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~ 210 (565)
|+-+.|.+|.|||||.++ ++++..... .|..++|+.+..+|-...
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~-------~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEecCCCCCHHH
Confidence 355899999999999987 556655444 377899999987776654
No 397
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=58.39 E-value=3.8 Score=36.24 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+.|.||+|+|||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445789999999999753
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=58.29 E-value=5.3 Score=34.34 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+++.|+.|+|||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999875
No 399
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.29 E-value=2.3 Score=38.39 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=12.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..|+-+.+.||+|+|||.+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999763
No 400
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.27 E-value=2.4 Score=37.48 Aligned_cols=19 Identities=26% Similarity=-0.013 Sum_probs=15.4
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+.-+.|.|++|+|||.++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4455789999999999864
No 401
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=58.05 E-value=4.5 Score=34.97 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+++.|++|||||.++
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999875
No 402
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.97 E-value=4.7 Score=35.06 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..+++.|++|+|||.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456899999999999875
No 403
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=57.77 E-value=6.4 Score=38.41 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=16.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHH
Q 008430 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
-++|+||+|+|||.+ +.++..++
T Consensus 25 ~~~i~G~NGaGKTTl--l~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL--FEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHh
Confidence 477999999999976 44554443
No 404
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=57.72 E-value=4.9 Score=35.79 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=57.68 E-value=4.7 Score=34.07 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.4
Q ss_pred CCEEEEccCCChhHHHHH
Q 008430 159 RDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~~ 176 (565)
+++++.|+.|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998753
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=57.53 E-value=4.9 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|++|+|||.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 407
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.41 E-value=11 Score=40.72 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~l~~l~~~ 183 (565)
..++|+.||+|+|||.++ -.+...+
T Consensus 201 ~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 347999999999999875 3344443
No 408
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.34 E-value=34 Score=33.44 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
..++||.++++.-+..+.+.+... ++.+..+.|+....+....+ .+..+|+|+|. .+ ...+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCccc
Confidence 457999999999998888877764 56788888888765543332 45788999993 22 23567778
Q ss_pred ceEEEecc
Q 008430 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-+
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88888633
No 409
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=57.02 E-value=5.2 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+..+++.|+.|+|||.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999875
No 410
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.88 E-value=5.4 Score=33.74 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
+.+++.|+.|+|||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999875
No 411
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=56.63 E-value=4.7 Score=41.82 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.3
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|..+++.||+|+|||.++
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999864
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=56.59 E-value=5.6 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
...+++.|+.|+|||.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999875
No 413
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=56.54 E-value=4.9 Score=35.60 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999875
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=56.27 E-value=13 Score=43.71 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
.|+.+++.|++|+|||..++. ++..... .+.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlq-la~~~~~-------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQ-VIAAAQR-------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHHHHHH-------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHhh-------CCCceEEEEecC
Confidence 456799999999999987643 3333333 255688887543
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.10 E-value=4.4 Score=50.09 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=17.4
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~ 175 (565)
..++.+|++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 36788999999999999865
No 416
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.98 E-value=13 Score=34.99 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=46.9
Q ss_pred CCeEEEEecccchHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-c-----c-CCCCcc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A-----S-RGLDVM 441 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~-~Gidip 441 (565)
..++||.|++++-|..+.+.+... ++.+..++|+...... .....+|+|+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988888764 4566777776543221 1345689999952 1 1 356777
Q ss_pred CccEEEE
Q 008430 442 GVAHVVN 448 (565)
Q Consensus 442 ~v~~Vi~ 448 (565)
.+.+||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777765
No 417
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.68 E-value=84 Score=31.75 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+...++++.+..-+..+.+.+.+ . +..+..+.|+....+.... ..+..+|+|+|++.+.. .+++.+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~----~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKN----E-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT----T-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHH----c-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----cccccc
Confidence 34455555555444444444443 2 2478888888876544332 24678999999888763 467778
Q ss_pred ceEEEecchh
Q 008430 270 VSFVILDEAD 279 (565)
Q Consensus 270 ~~~iIiDE~H 279 (565)
+++||+....
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999998776
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=55.32 E-value=5.3 Score=35.41 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999875
No 419
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=55.32 E-value=5.3 Score=34.46 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 420
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=55.30 E-value=4.8 Score=35.55 Aligned_cols=19 Identities=26% Similarity=0.022 Sum_probs=15.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+.|.|++|+|||.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445779999999999864
No 421
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.29 E-value=6.4 Score=37.28 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
.|+.+.|+||+|+|||... -++..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl--~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC--NSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH--HHHhhhc
Confidence 6777899999999999753 3444443
No 422
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.18 E-value=10 Score=33.00 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCceEEEecchhHh--hcCCCHHHHHHHHHhCCCCCcEEEEEeec
Q 008430 267 LSRVSFVILDEADRM--LDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~--~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
..+.+++|+||+..+ .+..+...+..++... ..+|+.|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 456899999997655 3333555566666533 2256556664
No 423
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=55.03 E-value=5.9 Score=34.62 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+++.|+.|+|||.++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999875
No 424
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=54.94 E-value=5 Score=34.32 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|..+++.|+.|+|||.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456789999999999864
No 425
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.85 E-value=11 Score=35.36 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.4
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-+++++++|+|||.+.
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999865
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=54.42 E-value=5.2 Score=36.24 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.++||.|+|||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999974
No 427
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=54.41 E-value=13 Score=32.38 Aligned_cols=16 Identities=31% Similarity=-0.022 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-+.+.|+.|+|||..+
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 428
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.32 E-value=25 Score=33.08 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred eEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcCc-c----c-CCCCccCccE
Q 008430 376 LTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A----S-RGLDVMGVAH 445 (565)
Q Consensus 376 ~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~-~Gidip~v~~ 445 (565)
++||.|+++.-+..+++.+.+. +..+..++|+.+..+.... +. ..+|+|+|.- + . ..+++..+++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 132 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSFEI 132 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhCcE
Confidence 5999999999999999888764 5788889998876654433 22 3679999942 1 2 2345666777
Q ss_pred EEE
Q 008430 446 VVN 448 (565)
Q Consensus 446 Vi~ 448 (565)
||.
T Consensus 133 iVi 135 (337)
T 2z0m_A 133 VII 135 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.16 E-value=8.9 Score=32.81 Aligned_cols=19 Identities=21% Similarity=0.164 Sum_probs=16.3
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|+-+++.|+.|+|||.++
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4567999999999999765
No 430
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=53.96 E-value=5.5 Score=35.57 Aligned_cols=19 Identities=32% Similarity=0.128 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556899999999999764
No 431
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.79 E-value=6 Score=34.04 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.4
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 432
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.77 E-value=5.8 Score=35.41 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..+.+.|++|+|||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999865
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=53.66 E-value=15 Score=32.46 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.7
Q ss_pred EEEEccCCChhHHHHH
Q 008430 161 LLGCAETGSGKTAAFT 176 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~ 176 (565)
+++.||+|+||+..+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998763
No 434
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=53.48 E-value=11 Score=45.21 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=33.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHH
Q 008430 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 155 l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~ 211 (565)
+..|+.+++.+++|+|||..+ ..++..... .|.+++|+.- .++..++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la-~~~~~ea~k-------~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEECT-TSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEEc-cccHHHHH
Confidence 335678999999999999877 444444443 3677888874 45555555
No 435
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.47 E-value=27 Score=37.90 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=54.3
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhc------CCCceEEEEECCCCHHHHHHHHh---------CCCcEEEEccHHHHH
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRS------LDSFKTAIVVGGTNIAEQRSELR---------GGVSIVVATPGRFLD 258 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~---------~~~~ilv~T~~~l~~ 258 (565)
+..+||.+|++.-+.++++.+.+.+.. ..++.+..++|+....++...+. +...|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 567999999999999998888864321 24678889999988776654442 3468999993
Q ss_pred HHHcCCCCCCCceEEEe
Q 008430 259 HLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 259 ~l~~~~~~~~~~~~iIi 275 (565)
.+.. .+++.++++||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3332 356677887774
No 436
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.33 E-value=6 Score=34.60 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 437
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.24 E-value=6 Score=34.49 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=13.3
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+++.|++|+|||..+
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 688999999999864
No 438
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=53.18 E-value=6.3 Score=34.66 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+.-+++.|+.|+|||.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4556899999999999875
No 439
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=52.99 E-value=6.2 Score=33.17 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999875
No 440
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.93 E-value=9 Score=42.23 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.||||+|||.++
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999875
No 441
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=52.88 E-value=6.1 Score=34.61 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+.|.|+.|+|||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999864
No 442
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=52.79 E-value=41 Score=35.63 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCeEEEEccchhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEEccHHHHHHHHcCCCCCCC
Q 008430 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ilv~T~~~l~~~l~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..+.|+....+.... ..+..+|+|||. .+ ...+.+.+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 678999999999998888877764 5677778887765544333 235689999982 22 23466778
Q ss_pred ceEEEecchhH
Q 008430 270 VSFVILDEADR 280 (565)
Q Consensus 270 ~~~iIiDE~H~ 280 (565)
+++||+=+++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99999877754
No 443
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=52.74 E-value=9.4 Score=30.40 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=30.7
Q ss_pred CCeEEEEecccch--HHHHHHHHHHcCCceeEecCCCC
Q 008430 374 FPLTIVFVERKTR--CDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~liF~~s~~~--a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..++++||.+-.. +...+..|...|+.+..+.|++.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 4469999999777 89999999999999888888763
No 444
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=52.50 E-value=5.7 Score=34.90 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+.-+++.|+.|+|||.++
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445889999999999875
No 445
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.26 E-value=6.4 Score=34.56 Aligned_cols=15 Identities=33% Similarity=0.228 Sum_probs=13.1
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+.+.|+.|+|||.++
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 446
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=52.21 E-value=6 Score=35.91 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.|.||.|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999975
No 447
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.00 E-value=6.9 Score=34.48 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.+.-+++.|+.|+|||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556899999999999875
No 448
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.00 E-value=6.6 Score=35.73 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
...+++.|+.|+|||.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999875
No 449
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.80 E-value=12 Score=46.50 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHH----HhHhCCCCEEEEccCCChhHHHH
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAM----PVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l----~~l~~g~~~li~a~TGsGKT~~~ 175 (565)
+.+.+.+...++. +.+.+..-+ +.+...+.++++||||+|||.++
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 4455566666664 555543322 23334567999999999999975
No 450
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=51.62 E-value=5.4 Score=34.11 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=11.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+.-+++.|+.|+|||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445889999999999875
No 451
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=51.54 E-value=10 Score=31.90 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=19.0
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHH
Q 008430 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 156 ~~g~~~li~a~TGsGKT~~~~l~~l~~~~ 184 (565)
..|.-+.+.||.|+|||.. +-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 3556688999999999975 44444443
No 452
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=51.35 E-value=6.9 Score=34.87 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677789999999999975
No 453
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.29 E-value=24 Score=44.42 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHh----HhCCCCEEEEccCCChhHHHHHHHHHHHHHh
Q 008430 130 PSIMKDIEFHEYTRPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 130 ~~i~~~l~~~~~~~~~~~Q~~~l~~----l~~g~~~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
..+.+.+...|+ .+.+.|..-+-. +.....++++||||+|||.++ -++...+.
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~--~~L~~al~ 931 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW--EVYLEAIE 931 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH--HHHHHHHT
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH--HHHHHHHH
Confidence 445566667776 455554333322 224456999999999999985 34444444
No 454
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=51.26 E-value=6.6 Score=36.14 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
.-++++|+.|+|||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34789999999999875
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=51.26 E-value=6.9 Score=34.78 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 456
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.23 E-value=14 Score=37.97 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=49.7
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-c----ccCC-C-CccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASRG-L-DVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~~G-i-dip~ 442 (565)
..++||.|+++.-+....+.+... ++.+..++|+.+...+...+. +..+|+|+|. . +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 457999999999888877777665 899999999987655433322 2367999994 2 2222 3 5666
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 457
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.18 E-value=7.7 Score=36.94 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~ 176 (565)
.|..+++.||+|+|||..++
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 44557999999999998763
No 458
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=50.57 E-value=16 Score=34.76 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=21.9
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
+++.+..|.|||.+++.- ...+.. .|.++|+|-
T Consensus 17 ~v~sgKGGvGKTTvA~~L-A~~lA~-------~G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAAT-ALWMAR-------SGKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHH-HHHHHH-------TTCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHH-HHHHHH-------CCCcEEEEe
Confidence 567889999999887433 333333 266777776
No 459
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=50.34 E-value=7.2 Score=33.64 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=13.3
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+++.|+.|||||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 460
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=50.28 E-value=12 Score=28.82 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.0
Q ss_pred CeEEEEecccchHHHHHHHHHHcCCc-eeEecCCCC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGLH-AVALHGGRN 409 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~~-~~~~~~~~~ 409 (565)
.++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 53 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 53 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 46999999988899999999999995 778888763
No 461
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=50.16 E-value=18 Score=31.90 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 008430 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 162 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 202 (565)
+....+|.|||.+++ -+...+.. .|.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~-nLa~~la~-------~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASC-ALLQAAKA-------AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHH-HHHHHHHH-------TTCCEEEECS
T ss_pred EEECCCCCCHHHHHH-HHHHHHHH-------CCCCEEEEcc
Confidence 344468999998873 34444333 3777888654
No 462
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.13 E-value=7.1 Score=34.01 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+.|.|++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999865
No 463
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=49.99 E-value=7.2 Score=34.54 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 464
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=49.96 E-value=20 Score=30.58 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=13.3
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
-++++|+.|+|||...
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3788999999999753
No 465
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=49.79 E-value=7.7 Score=35.51 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.|..+.|.|++|+|||.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556889999999999864
No 466
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.75 E-value=29 Score=32.98 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=16.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHh
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~ 185 (565)
+.|.|++|+|||..+ ..+..++.
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHHT
T ss_pred EEEECCCCCCHHHHH--HHHHHHhc
Confidence 678999999999863 44555544
No 467
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.70 E-value=9.7 Score=32.79 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccchhhHHHHHHHHHH
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~~L~~Q~~~~~~~ 216 (565)
++|.|++|||||..+ .-+ ... +..++|++.-...-.++.+++..
T Consensus 2 ilV~Gg~~SGKS~~A-~~l----a~~-------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA-EAL----IGD-------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHH-HHH----HCS-------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHH-HHH----Hhc-------CCCeEEEecCCCCCHHHHHHHHH
Confidence 689999999999754 222 111 33478888755443334333333
No 468
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=49.66 E-value=43 Score=35.61 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=49.8
Q ss_pred CeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccCC-C-CccCc
Q 008430 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-L-DVMGV 443 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-i-dip~v 443 (565)
+++||.++++.-+....+.+.+. ++.+..++|+.+...+...+. ...+|+|+|. .+..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 57999999998888888887765 789999999886543332221 2478999994 22333 3 56777
Q ss_pred cEEEEc
Q 008430 444 AHVVNL 449 (565)
Q Consensus 444 ~~Vi~~ 449 (565)
++||.-
T Consensus 138 ~~vViD 143 (696)
T 2ykg_A 138 TLMIFD 143 (696)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 887763
No 469
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=49.50 E-value=15 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCeEEEEecccchHHHHHHHHHHcCC-ceeEecCCCC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN 409 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~~~-~~~~~~~~~~ 409 (565)
..++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 44699999998899999999999999 5888999863
No 470
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=49.16 E-value=7 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677789999999999975
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.04 E-value=7.1 Score=35.98 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.|.||.|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677789999999999975
No 472
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.03 E-value=7.6 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 008430 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~ 175 (565)
+..++++|+.|+|||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 473
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=49.00 E-value=6.5 Score=33.59 Aligned_cols=16 Identities=31% Similarity=0.221 Sum_probs=13.3
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
.+.|+|++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=49.00 E-value=9.8 Score=33.94 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHHH
Q 008430 158 GRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 158 g~~~li~a~TGsGKT~~~~ 176 (565)
.+-+++.||+|+||+..+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3447889999999998753
No 475
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.98 E-value=6.8 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.|.||.|+|||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999975
No 476
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=48.90 E-value=19 Score=29.60 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.6
Q ss_pred CeEEEEecccchHHHHHHHHHHcCC-ceeEecCCCC
Q 008430 375 PLTIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN 409 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l~~~l~~~~~-~~~~~~~~~~ 409 (565)
.++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3599999998889999999999999 5888999874
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.79 E-value=7.1 Score=35.17 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677788999999999975
No 478
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=48.65 E-value=3.7 Score=38.98 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 008430 3 YEPPHRRTSSSN 14 (565)
Q Consensus 3 ~~~~~~~~~~~~ 14 (565)
|+|..-...|.+
T Consensus 2 ~~~~~~~~~~~~ 13 (319)
T 1lsh_B 2 YVPQRKPQTSRR 13 (319)
T ss_dssp ------------
T ss_pred CCcccCCccccc
Confidence 566655544433
No 479
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=48.64 E-value=42 Score=32.72 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=50.0
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----cccC-CCCccCc
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMGV 443 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~v 443 (565)
..++||.|+++.-+..+++.+... +..+..++|+..... ....+..+..+|+|+|. .+.. .+++..+
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 446999999999999988888775 566777777765433 34556667889999994 2222 3455566
Q ss_pred cEEEE
Q 008430 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 185 ~~vVi 189 (414)
T 3eiq_A 185 KMFVL 189 (414)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66654
No 480
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=48.49 E-value=10 Score=33.22 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=22.1
Q ss_pred ceEEEecchhHhhcCC---C--HHHHHHHHHhCCCCCcEEEEEeec
Q 008430 270 VSFVILDEADRMLDMG---F--EPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~---~--~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
-.+|||||||.+.... . ...+..+...-....+++++|-.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 5689999999984321 1 111222222223345677777663
No 481
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.18 E-value=7.2 Score=34.98 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.4
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999974
No 482
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=48.16 E-value=43 Score=36.44 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=47.3
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-c----ccCC-C-CccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASRG-L-DVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~~G-i-dip~ 442 (565)
.+++||.|+++.-+....+.|... ++.+..+||+.+...+...+. +..+|+|+|. . +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 557999999999988888777765 899999999987655433222 3577999994 2 2222 3 5667
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 483
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=48.03 E-value=8.2 Score=33.37 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.3
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 484
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=47.99 E-value=8.1 Score=34.52 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.4
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.++
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999875
No 485
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.96 E-value=11 Score=40.95 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHH
Q 008430 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~li~a~TGsGKT~~~ 175 (565)
++++.||+|+|||.++
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999875
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=47.76 E-value=7.1 Score=36.99 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|..+.|+||+|+|||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 567789999999999975
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=47.65 E-value=3.8 Score=44.82 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.2
Q ss_pred CCCCEEEEccCCChhHHHH
Q 008430 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~ 175 (565)
.++.+++.||+|+|||.++
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 4567999999999999865
No 488
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=47.62 E-value=6 Score=36.22 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 008430 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~li~a~TGsGKT~~~ 175 (565)
..++++|++|+|||.++
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999865
No 489
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.44 E-value=7.6 Score=35.95 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.++||.|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999975
No 490
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=47.37 E-value=13 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=30.2
Q ss_pred CeEEEEe-cccchHHHHHHHHHHcCCceeEecCCCC
Q 008430 375 PLTIVFV-ERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 375 ~~~liF~-~s~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
.++++|| .+-..+...+..|...|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3699999 4777888999999999999999999875
No 491
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=47.36 E-value=14 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCeEEEEeccc--chHHHHHHHHHHcCCceeEecCCCC
Q 008430 374 FPLTIVFVERK--TRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~liF~~s~--~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..++++||.+- ..+...+..|...|+++..+.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 34699999987 5889999999999999888999864
No 492
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=47.23 E-value=19 Score=34.74 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=21.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
+++.+..|.|||.+++. +...+.. .|.++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~-LA~~lA~-------~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAA-TGVYLAE-------KGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHH-HHHHHHH-------SSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHH-HHHHHHH-------CCCeEEEEe
Confidence 56788899999988743 3333333 266777776
No 493
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.20 E-value=11 Score=35.94 Aligned_cols=14 Identities=36% Similarity=0.299 Sum_probs=12.6
Q ss_pred EEEEccCCChhHHH
Q 008430 161 LLGCAETGSGKTAA 174 (565)
Q Consensus 161 ~li~a~TGsGKT~~ 174 (565)
++|.|+.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999975
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.09 E-value=16 Score=37.48 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccch
Q 008430 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P~~ 204 (565)
.|.-++|.|++|+|||.... .++..... .|.+++++++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~-~l~g~~~~-------~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVS-RFVENACA-------NKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHH-HHHHHHHT-------TTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHh-------CCCCEEEEEEeC
Confidence 55668999999999998642 22222221 244577777643
No 495
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.04 E-value=5.8 Score=42.52 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=47.5
Q ss_pred CeEEEEecccchHHHH-HHHHHHcC---CceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-ccc-----------CCC
Q 008430 375 PLTIVFVERKTRCDEV-SEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VAS-----------RGL 438 (565)
Q Consensus 375 ~~~liF~~s~~~a~~l-~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~-----------~Gi 438 (565)
+++||.++++.-+... .+.|.+.. +.+..++|+....++...+. +..+|+|+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 4699999999988888 88887763 79999999987665443332 5678999994 222 235
Q ss_pred CccCccEEEE
Q 008430 439 DVMGVAHVVN 448 (565)
Q Consensus 439 dip~v~~Vi~ 448 (565)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6777888875
No 496
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=47.02 E-value=39 Score=31.08 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=18.8
Q ss_pred EEEEc-cCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008430 161 LLGCA-ETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 161 ~li~a-~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 200 (565)
+++.+ ..|.|||.+++- +...+.. .|.++|+|
T Consensus 85 I~vts~kgG~GKTt~a~n-LA~~lA~-------~G~rVLLI 117 (271)
T 3bfv_A 85 IVITSEAPGAGKSTIAAN-LAVAYAQ-------AGYKTLIV 117 (271)
T ss_dssp EEEECSSTTSSHHHHHHH-HHHHHHH-------TTCCEEEE
T ss_pred EEEECCCCCCcHHHHHHH-HHHHHHh-------CCCeEEEE
Confidence 44554 468999988643 3333322 26677776
No 497
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.02 E-value=38 Score=34.66 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCeEEEEecccchHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHhhcCCceEEEEcC-c----ccCC-C-CccC
Q 008430 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASRG-L-DVMG 442 (565)
Q Consensus 374 ~~~~liF~~s~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~~G-i-dip~ 442 (565)
..++||.|+++.-+....+.+... ++.+..++|+.+...+...+. ...+|+|+|. . +..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 457999999999888888877765 899999999986555433222 2367999994 2 2233 3 5667
Q ss_pred ccEEEE
Q 008430 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 498
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=46.86 E-value=17 Score=34.72 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=21.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008430 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 201 (565)
+++.+..|.|||.+++.-+ ..+.. .|.++++|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA-~~lA~-------~G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLA-IQMSK-------VRSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHH-HHHHT-------SSSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHH-HHHHH-------CCCeEEEEE
Confidence 5678899999998874333 22222 367787774
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.76 E-value=7.9 Score=35.57 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHH
Q 008430 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~g~~~li~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999975
No 500
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=46.76 E-value=9 Score=33.41 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=13.3
Q ss_pred EEEEccCCChhHHHH
Q 008430 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~li~a~TGsGKT~~~ 175 (565)
+.+.|++|||||.++
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
Done!