Your job contains 1 sequence.
>008432
MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM
GGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYP
NATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANA
DTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQS
NGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDISSRRRRKRK
ASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQPPHDSPSARTS
PPQPPEPSLSSPPGLGRYEEPAAGYFLKVKPFEDIHSGVGSQSIPSSASGHGILSHNSEV
NSSRSNQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLVETAPT
PTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVL
ATSDVLKVEQNKPYGDILISRGKRM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008432
(565 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2169667 - symbol:SYN1 "SYNAPTIC 1" species:370... 612 3.4e-92 2
TAIR|locus:2097548 - symbol:SYN3 "AT3G59550" species:3702... 195 7.7e-18 2
MGI|MGI:108016 - symbol:Rad21 "RAD21 homolog (S. pombe)" ... 168 4.4e-15 3
FB|FBgn0260987 - symbol:vtd "verthandi" species:7227 "Dro... 176 4.8e-15 3
RGD|1594529 - symbol:Rad21 "RAD21 homolog (S. pombe)" spe... 168 5.5e-15 3
UNIPROTKB|O60216 - symbol:RAD21 "Double-strand-break repa... 169 6.6e-15 3
TAIR|locus:2181457 - symbol:SYN4 "sister chromatid cohesi... 163 1.7e-14 3
UNIPROTKB|E2QRU9 - symbol:RAD21 "Uncharacterized protein"... 168 2.2e-14 3
UNIPROTKB|F1S1K0 - symbol:LOC100738633 "Uncharacterized p... 168 2.2e-14 3
UNIPROTKB|Q3SWX9 - symbol:RAD21 "Double-strand-break repa... 168 2.8e-14 3
UNIPROTKB|F1NYD0 - symbol:RAD21 "Uncharacterized protein"... 168 1.1e-13 2
ZFIN|ZDB-GENE-060503-223 - symbol:rad21b "RAD21 homolog (... 166 2.0e-13 3
UNIPROTKB|O93310 - symbol:rad21 "Double-strand-break repa... 163 2.3e-13 2
ZFIN|ZDB-GENE-030131-994 - symbol:rad21a "RAD21 homolog (... 164 1.8e-12 3
WB|WBGene00004737 - symbol:scc-1 species:6239 "Caenorhabd... 139 4.0e-12 3
UNIPROTKB|E5RFV8 - symbol:RAD21 "Double-strand-break repa... 169 7.2e-12 1
UNIPROTKB|E5RIN7 - symbol:RAD21 "Double-strand-break repa... 169 7.2e-12 1
UNIPROTKB|Q9H4I0 - symbol:RAD21L1 "Double-strand-break re... 163 9.0e-12 2
UNIPROTKB|F1PWJ5 - symbol:RAD21L1 "Uncharacterized protei... 158 2.0e-11 2
UNIPROTKB|D2HSB3 - symbol:RAD21L1 "Double-strand-break re... 156 3.3e-11 2
UNIPROTKB|E5RJK5 - symbol:RAD21 "Double-strand-break repa... 160 6.8e-11 1
UNIPROTKB|E5RJW1 - symbol:RAD21 "Double-strand-break repa... 160 6.8e-11 1
TAIR|locus:2164501 - symbol:SYN2 species:3702 "Arabidopsi... 126 1.3e-10 3
ZFIN|ZDB-GENE-061103-505 - symbol:rad21l1 "RAD21-like 1 (... 151 1.4e-10 2
UNIPROTKB|G4MR40 - symbol:MGG_09891 "Double-strand-break ... 155 2.0e-10 3
UNIPROTKB|E1B9J3 - symbol:RAD21L1 "Uncharacterized protei... 156 2.3e-10 2
MGI|MGI:3652039 - symbol:Rad21l "RAD21-like (S. pombe)" s... 150 3.1e-10 2
RGD|1587557 - symbol:Rad21l1 "RAD21-like 1 (S. pombe)" sp... 150 6.2e-10 2
POMBASE|SPCC338.17c - symbol:rad21 "mitotic cohesin compl... 124 6.5e-10 3
WB|WBGene00000591 - symbol:coh-1 species:6239 "Caenorhabd... 112 2.4e-09 3
UNIPROTKB|E1C938 - symbol:RAD21L1 "Uncharacterized protei... 148 5.6e-09 2
UNIPROTKB|E1BTV6 - symbol:RAD21L1 "Uncharacterized protei... 148 5.9e-09 2
UNIPROTKB|E1BTU9 - symbol:RAD21L1 "Uncharacterized protei... 148 6.4e-09 2
UNIPROTKB|F1S874 - symbol:RAD21L1 "Uncharacterized protei... 159 2.2e-08 1
ASPGD|ASPL0000069046 - symbol:AN7465 species:162425 "Emer... 120 1.8e-06 4
UNIPROTKB|E1BL69 - symbol:REC8 "Uncharacterized protein" ... 97 0.00013 3
UNIPROTKB|H0YLK4 - symbol:REC8 "Meiotic recombination pro... 91 0.00035 3
UNIPROTKB|O95072 - symbol:REC8 "Meiotic recombination pro... 91 0.00035 3
>TAIR|locus:2169667 [details] [associations]
symbol:SYN1 "SYNAPTIC 1" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM] [GO:0007062 "sister chromatid cohesion"
evidence=RCA;IMP] [GO:0010032 "meiotic chromosome condensation"
evidence=IMP] [GO:0008278 "cohesin complex" evidence=ISS]
[GO:0005694 "chromosome" evidence=IDA] [GO:0006325 "chromatin
organization" evidence=IMP] [GO:0051455 "attachment of spindle
microtubules to kinetochore involved in homologous chromosome
segregation" evidence=IMP] [GO:0051754 "meiotic sister chromatid
cohesion, centromeric" evidence=IMP] [GO:0006302 "double-strand
break repair" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0045132 "meiotic chromosome segregation" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0051754 EMBL:AB005241
GO:GO:0006325 GO:GO:0000228 GO:GO:0051455 GO:GO:0008278
GO:GO:0010032 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF080620 EMBL:AF080619 EMBL:AJ238306 IPI:IPI00517990
IPI:IPI00540220 PIR:T52571 RefSeq:NP_196168.1 RefSeq:NP_850773.1
UniGene:At.48986 UniGene:At.690 ProteinModelPortal:Q9S7T7
SMR:Q9S7T7 STRING:Q9S7T7 PRIDE:Q9S7T7 EnsemblPlants:AT5G05490.1
GeneID:830432 KEGG:ath:AT5G05490 GeneFarm:1768 TAIR:At5g05490
eggNOG:NOG252146 HOGENOM:HOG000083970 InParanoid:Q9S7T7 OMA:RLSGILM
PhylomeDB:Q9S7T7 ProtClustDB:CLSN2686639 Genevestigator:Q9S7T7
Uniprot:Q9S7T7
Length = 627
Score = 612 (220.5 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
Identities = 141/275 (51%), Positives = 175/275 (63%)
Query: 7 LLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILMGGVVIV 66
LLARKA LGQIWMAAT+HAK+NR CEEILNP+VPMALRLSGILMGGVVIV
Sbjct: 17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76
Query: 67 YEKKI------------EINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLE 114
YE+K+ EIN AW+TK DPTLLPKGK+ A++EAVTLPE +E D D E
Sbjct: 77 YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136
Query: 115 QFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFD 174
Q N P M+FQQ + SMRLD+ S + +N +D Q HQA+ ++ITL E
Sbjct: 137 QTRNVPKFGNYMDFQQT-FISMRLDE---SHVNNNPEPEDLGQQFHQADAENITLFEYHG 192
Query: 175 TYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPK-LMPSPP-HQDEPQRADVIHDQH 232
++Q N +TYDRFERFDIE D ETQ+N RE +IP L+PSPP H D P+ ++
Sbjct: 193 SFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEG---VNPTS 249
Query: 233 PEQQNQQSNGSKEEARQDQQRKGPLKRK-TRKQAA 266
P++Q QQ N A Q +++ P K + R Q A
Sbjct: 250 PQRQEQQENRRDGFAEQMEEQNIPDKEEHDRPQPA 284
Score = 550 (198.7 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 126/288 (43%), Positives = 166/288 (57%)
Query: 71 IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYPNATATMEFQQ 130
+EIN AW+TK DPTLLPKGK+ A++EAVTLPE +E D D EQ N P M+FQQ
Sbjct: 93 VEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFEQTRNVPKFGNYMDFQQ 152
Query: 131 NAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFD 190
+ SMRLD+ S + +N +D Q HQA+ ++ITL E ++Q N +TYDRFERFD
Sbjct: 153 T-FISMRLDE---SHVNNNPEPEDLGQQFHQADAENITLFEYHGSFQTNNETYDRFERFD 208
Query: 191 IEEDTETQLNFTSREQTQIPK-LMPSPP-HQDEPQRADVIHDQHPEQQNQQSNGSKEEA- 247
IE D ETQ+N RE +IP L+PSPP H D P+ + Q EQQ + +G E+
Sbjct: 209 IEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVNPTSPQRQEQQENRRDGFAEQME 268
Query: 248 ------RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDIXXXXXXXXXA 301
+++ R P K++ RK A AMDY+QT+I G VYQSWL+D SDI
Sbjct: 269 EQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWLQDTSDILCRGEKRKVR 328
Query: 302 STDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWMKSTQ 349
T + M+ MPP L E ++ YP L +LW K+TQ
Sbjct: 329 GT-IRPDMESFKRANMPPTQLFE-------KDSSYPPQLYQLWSKNTQ 368
Score = 326 (119.8 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
Identities = 81/182 (44%), Positives = 104/182 (57%)
Query: 387 LKVKPFEDIHSGVGSQSIPSSASGHGILS-HNSEVNS-SRS-NQKRPXXXXXXXXXXLEP 443
+ V PF +SG +S+PS+ S G S +N E++S SR N+KRP LEP
Sbjct: 453 INVTPF---YSGDDVRSMPSTPSARGAASINNIEISSKSRMPNRKRPNSSPRRG---LEP 506
Query: 444 VAEENPSRFPDPNFRLSRLSERSSTPDXXXXXXXXXXXXXXXXXXXXXXDKITDSIRMQM 503
VAEE P + F S L E+ T D + ITDSI+ +
Sbjct: 507 VAEERPWEHREYEFEFSMLPEKRFTADKEILFETASTQTQKPVCNQSD-EMITDSIKSHL 565
Query: 504 KSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGK 563
K+HFE PGAP+VESLN LA G++R AAA LF+Q+CVLAT V+KV Q +PYGDILI+RG
Sbjct: 566 KTHFETPGAPQVESLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVNQAEPYGDILIARGP 625
Query: 564 RM 565
M
Sbjct: 626 NM 627
>TAIR|locus:2097548 [details] [associations]
symbol:SYN3 "AT3G59550" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0009555 "pollen development"
evidence=IMP] [GO:0009561 "megagametogenesis" evidence=IMP]
[GO:0000280 "nuclear division" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0042023 "DNA endoreduplication" evidence=RCA] [GO:0051225
"spindle assembly" evidence=RCA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0007059 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0009555 GO:GO:0009561 EMBL:AL138659
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
GO:GO:0000798 EMBL:AF281155 EMBL:AF400128 IPI:IPI00518598
IPI:IPI00541511 IPI:IPI00548487 PIR:T49296 RefSeq:NP_191514.1
UniGene:At.1119 ProteinModelPortal:Q9FQ19 SMR:Q9FQ19 PaxDb:Q9FQ19
PRIDE:Q9FQ19 EnsemblPlants:AT3G59550.1 GeneID:825124
KEGG:ath:AT3G59550 TAIR:At3g59550 HOGENOM:HOG000090294
InParanoid:Q9FQ19 OMA:TVWCAAH PhylomeDB:Q9FQ19
ProtClustDB:CLSN2915554 Genevestigator:Q9FQ19 GermOnline:AT3G59550
Uniprot:Q9FQ19
Length = 693
Score = 195 (73.7 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 79/285 (27%), Positives = 113/285 (39%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFYSH LLARK LG +W AA +H ++ + + I+ P VP+ALR S L+
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 GGVVIVYEKKIE-INAAWK---TKVAR----DPTLLPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y KK++ + W T VA+ LP+ QA E+VTLP+ D D
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
LE + T MEF + + D Q G+D + ++ I+ +
Sbjct: 121 LE------DDTLDMEFDNHTRSEEDITLTD----QIPTGIDPYVAVTFDEDI--ISESIP 168
Query: 173 FDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQH 232
D Q+ D+E ET + R+ P + +V Q
Sbjct: 169 MDVDQSTEPVSRHTGEIDVETAHETGPDNEPRDSNIAFDTGTYSPRNVTEEFTEV---QD 225
Query: 233 PEQQNQQSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIP 277
P Q N R D G + R + A A D T P
Sbjct: 226 PRQSNLTEERIPNSERNDATSPGTVPEIERMRDA-AHDLSPTSHP 269
Score = 101 (40.6 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILI 559
SL+ + AG RK AA +F++T VL + ++ ++Q++PYGDI +
Sbjct: 639 SLSEILAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIAL 681
>MGI|MGI:108016 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0007067 "mitosis" evidence=IEA] [GO:0008278 "cohesin complex"
evidence=IDA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IDA] [GO:0051301 "cell division" evidence=IEA] [GO:0071168
"protein localization to chromatin" evidence=ISO]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
MGI:MGI:108016 GO:GO:0006915 GO:GO:0007059 GO:GO:0005654
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0006357 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0071168 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 ChiTaRS:RAD21 EMBL:D49429
EMBL:X98293 EMBL:AF332086 EMBL:AF332085 EMBL:AK004746 EMBL:AK163992
EMBL:BC043032 IPI:IPI00329840 PIR:JC4248 RefSeq:NP_033035.3
UniGene:Mm.182628 ProteinModelPortal:Q61550 SMR:Q61550
DIP:DIP-56655N IntAct:Q61550 STRING:Q61550 PhosphoSite:Q61550
PaxDb:Q61550 PRIDE:Q61550 Ensembl:ENSMUST00000022927 GeneID:19357
KEGG:mmu:19357 InParanoid:Q810A8 NextBio:296405 Bgee:Q61550
CleanEx:MM_RAD21 Genevestigator:Q61550
GermOnline:ENSMUSG00000022314 GO:GO:0034991 Uniprot:Q61550
Length = 635
Score = 168 (64.2 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Score = 89 (36.4 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 579 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR 631
Score = 54 (24.1 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 205 EQTQIPKLMPSPPHQD-EPQRADVIHDQHPEQQNQQSNGSKEEARQ--DQQRKGPLKRKT 261
E ++P+ P Q +PQR DVI + E+ ++ + E +R ++ P +
Sbjct: 421 ENPEVPREEQQPQQQQPQPQR-DVIDEPIIEEPSRLQDSVMEASRTTIEESAMPPPPPQG 479
Query: 262 RKQAAFAMDYDQTMIPGEVYQ 282
K+ A +D + ++ P +V Q
Sbjct: 480 VKRKAGQIDPEPSIPPQQVEQ 500
>FB|FBgn0260987 [details] [associations]
symbol:vtd "verthandi" species:7227 "Drosophila melanogaster"
[GO:0006289 "nucleotide-excision repair" evidence=NAS] [GO:0008278
"cohesin complex" evidence=ISS;IDA;NAS;IPI] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS;IMP;NAS] [GO:0000775
"chromosome, centromeric region" evidence=NAS] [GO:0007067
"mitosis" evidence=IMP] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0005705 "polytene chromosome interband"
evidence=IDA] [GO:0016322 "neuron remodeling" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007052 GO:GO:0016322 GO:GO:0010628 GO:GO:0005721
GO:GO:0000228 GO:GO:0007064 GO:GO:0008278 GO:GO:0005705
EMBL:CM000458 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AF109926
EMBL:AF267746 EMBL:AF267745 EMBL:BT100037 RefSeq:NP_001015132.1
UniGene:Dm.3062 DIP:DIP-18950N MINT:MINT-1730906 STRING:O96689
EnsemblMetazoa:FBtr0113746 GeneID:3354896 KEGG:dme:Dmel_CG17436
UCSC:CG17436-RA CTD:3354896 FlyBase:FBgn0260987 InParanoid:O96689
OMA:KRLMHWK OrthoDB:EOG44J102 GenomeRNAi:3354896 NextBio:849550
Uniprot:O96689
Length = 715
Score = 176 (67.0 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 57/190 (30%), Positives = 89/190 (46%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY H +LA+K L +IW+AA K+ + E IL P V +ALR SG L+
Sbjct: 1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEI------- 105
GVV +Y +K + N A+ K K+A P + LP+G +A A+TLPE+
Sbjct: 61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTA 120
Query: 106 -KETDVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANV 164
E + D+E + + A + Y S+ L DD F ++G + + + ++
Sbjct: 121 LPELNDIDIEAQFSINQSRADEITMREDYGSLSLSLQDDGF--GDIGFEAETPEIIRCSI 178
Query: 165 DDITLTERFD 174
+ FD
Sbjct: 179 PSNINDKIFD 188
Score = 99 (39.9 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 518 LNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
L+ L +G +RK AA FY VL VL ++Q+ PY DI I+RG
Sbjct: 663 LSQLTSGNSRKQAAQKFYSLLVLKKFKVLHIDQSAPYADITITRG 707
Score = 37 (18.1 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 254 KGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDI 291
KG K K +++ +D + I GE ++ L D SDI
Sbjct: 324 KGVTKAKRKRK--LIIDEIKN-ISGEEMKAQLADTSDI 358
>RGD|1594529 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0008278 "cohesin complex" evidence=ISO]
[GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO]
[GO:0071168 "protein localization to chromatin" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 RGD:1594529
GO:GO:0006357 GO:GO:0000228 EMBL:CH473950 GO:GO:0071168 CTD:5885
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:BC099200 IPI:IPI00360494
RefSeq:NP_001020872.1 UniGene:Rn.3991 STRING:Q4KLH7
Ensembl:ENSRNOT00000006209 GeneID:314949 KEGG:rno:314949
UCSC:RGD:1594529 InParanoid:Q4KLH7 NextBio:668408
Genevestigator:Q4KLH7 Uniprot:Q4KLH7
Length = 635
Score = 168 (64.2 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Score = 89 (36.4 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 579 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR 631
Score = 53 (23.7 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 205 EQTQIPKLMPSP-PHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQDQQRKG--PLKRKT 261
E ++P+ P P Q + QR DVI + E+ ++ + E +R + + P +
Sbjct: 421 ENPEVPREEQQPQPQQQQAQR-DVIDEPIIEEPSRLQDSVMEASRTNIEESAMPPPPPQG 479
Query: 262 RKQAAFAMDYDQTMIPGEVYQ 282
K+ A +D + + P +V Q
Sbjct: 480 VKRKAGQVDPEPAIPPQQVEQ 500
>UNIPROTKB|O60216 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0071168 "protein localization to
chromatin" evidence=IMP] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008278 "cohesin
complex" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
Reactome:REACT_115566 GO:GO:0007059 EMBL:CH471060 GO:GO:0005654
Reactome:REACT_21300 GO:GO:0000775 GO:GO:0051301 GO:GO:0006357
Reactome:REACT_111183 GO:GO:0006302 GO:GO:0007091 GO:GO:0007131
GO:GO:0000228 GO:GO:0000236 GO:GO:0008278 Orphanet:199
GO:GO:0071168 CTD:5885 eggNOG:NOG249424 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:X98294 EMBL:D38551
EMBL:AY675320 EMBL:AK289505 EMBL:BC050381 IPI:IPI00006715
RefSeq:NP_006256.1 UniGene:Hs.81848 ProteinModelPortal:O60216
SMR:O60216 DIP:DIP-29201N IntAct:O60216 MINT:MINT-2999858
STRING:O60216 PhosphoSite:O60216 PaxDb:O60216 PeptideAtlas:O60216
PRIDE:O60216 Ensembl:ENST00000297338 GeneID:5885 KEGG:hsa:5885
UCSC:uc003yod.3 GeneCards:GC08M117858 HGNC:HGNC:9811 HPA:CAB022065
HPA:HPA020044 MIM:606462 MIM:614701 neXtProt:NX_O60216
PharmGKB:PA34170 InParanoid:O60216 PhylomeDB:O60216
BioCyc:MetaCyc:ENSG00000164754-MONOMER ChiTaRS:RAD21
GenomeRNAi:5885 NextBio:22884 PMAP-CutDB:O60216 ArrayExpress:O60216
Bgee:O60216 CleanEx:HS_RAD21 Genevestigator:O60216
GermOnline:ENSG00000164754 Uniprot:O60216
Length = 631
Score = 169 (64.5 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 63/215 (29%), Positives = 102/215 (47%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Query: 173 FDTYQANADTYDRFERFDIEEDTETQLNFTSREQT 207
+ +A FE D+ T T EQ+
Sbjct: 169 EIMREGSA-----FEDDDMLVSTTTSNLLLESEQS 198
Score = 89 (36.4 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 575 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR 627
Score = 51 (23.0 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 213 MPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQ--DQQRKGPLKRKTRKQAAFAMD 270
+P Q + Q+ DVI + E+ ++ E +R D+ P + K+ A +D
Sbjct: 425 VPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKAGQID 484
Query: 271 YDQTMIPGEVYQ 282
+ M P +V Q
Sbjct: 485 PEPVMPPQQVEQ 496
>TAIR|locus:2181457 [details] [associations]
symbol:SYN4 "sister chromatid cohesion 1 protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISM] [GO:0007062
"sister chromatid cohesion" evidence=ISS;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007067 "mitosis" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000228
GO:GO:0007062 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AF400129 IPI:IPI00542370 RefSeq:NP_197131.2
UniGene:At.10001 UniGene:At.67257 ProteinModelPortal:Q8W1Y0
PaxDb:Q8W1Y0 PRIDE:Q8W1Y0 EnsemblPlants:AT5G16270.1 GeneID:831487
KEGG:ath:AT5G16270 TAIR:At5g16270 HOGENOM:HOG000090768
InParanoid:Q8W1Y0 OMA:EYNQDAS PhylomeDB:Q8W1Y0
ProtClustDB:CLSN2690166 Genevestigator:Q8W1Y0 Uniprot:Q8W1Y0
Length = 1031
Score = 163 (62.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 45/122 (36%), Positives = 63/122 (51%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFYS +LA+K LG IW+AA + K+ + + IL P P+ALRLS L+
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVA-RDPTL-LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K+ A K K A R + LP +S A ++TLPE D++D
Sbjct: 61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPET--FDLDD 118
Query: 113 LE 114
E
Sbjct: 119 FE 120
Score = 102 (41.0 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 519 NNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILI 559
+ L AG RK A+ +F++T VL T D ++VEQ KPY I+I
Sbjct: 980 DKLLAGKTRKEASRMFFETLVLKTRDYIQVEQGKPYESIII 1020
Score = 49 (22.3 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 22/99 (22%), Positives = 37/99 (37%)
Query: 184 DRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQSNGS 243
DR ED E + +T+ + P+ E Q H HP Q +Q+
Sbjct: 643 DRHASVGAVEDNECSVTAVEENKTEESSDPQAHPNDCEEQPGTA-HT-HP--QEEQTINQ 698
Query: 244 KEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQ 282
+EE + D + + K+ A D ++ +V Q
Sbjct: 699 QEELKDDNELAEKSDLEVLKEGNGAADEVNLVVIDDVSQ 737
Score = 45 (20.9 bits), Expect = 4.4e-14, Sum P(3) = 4.4e-14
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 140 DVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQL 199
D+DD L N + + H + + ITL + D + + ERF + ++ L
Sbjct: 115 DLDDFELPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAAL 174
Query: 200 N 200
+
Sbjct: 175 D 175
>UNIPROTKB|E2QRU9 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071168 "protein localization to chromatin"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 CTD:5885 GeneTree:ENSGT00390000011606
KO:K06670 OMA:VPREEQQ Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AAEX03008760 RefSeq:XP_539142.2 Ensembl:ENSCAFT00000001286
GeneID:482021 KEGG:cfa:482021 NextBio:20856709 Uniprot:E2QRU9
Length = 631
Score = 168 (64.2 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Score = 89 (36.4 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 575 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR 627
Score = 47 (21.6 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 213 MPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQ--DQQRKGPLKRKTRKQAAFAMD 270
+P Q + Q+ DVI + E+ ++ E +R D+ P + K+ A +D
Sbjct: 425 VPREDQQQQHQQRDVIDEPILEEPSRLQESVMETSRTNLDESAMPPPPPQGVKRKAGQID 484
Query: 271 YDQTMIPGEVYQ 282
+ + P +V Q
Sbjct: 485 PEPVIPPQQVEQ 496
>UNIPROTKB|F1S1K0 [details] [associations]
symbol:LOC100738633 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 KO:K06670 OMA:VPREEQQ
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AEMK01148771
EMBL:CU467777 EMBL:CU656020 RefSeq:XP_003481396.1
Ensembl:ENSSSCT00000006600 Ensembl:ENSSSCT00000033947
GeneID:100738633 KEGG:ssc:100738633 Uniprot:F1S1K0
Length = 631
Score = 168 (64.2 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Score = 88 (36.0 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 575 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIVATPGPR 627
Score = 48 (22.0 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 213 MPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQ--DQQRKGPLKRKTRKQAAFAMD 270
+P Q + Q+ DVI + E+ ++ + + E +R D+ P + K+ A +D
Sbjct: 425 VPREDQQQQHQQRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQID 484
Query: 271 YDQTMIPGEV 280
+ + P +V
Sbjct: 485 PEPVIPPQQV 494
>UNIPROTKB|Q3SWX9 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9913 "Bos taurus" [GO:0071168 "protein
localization to chromatin" evidence=ISS] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006915 GO:GO:0007059 GO:GO:0000775
GO:GO:0051301 GO:GO:0007067 GO:GO:0006281 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 EMBL:BC104612 IPI:IPI00708412
RefSeq:NP_001029889.1 UniGene:Bt.15668 ProteinModelPortal:Q3SWX9
STRING:Q3SWX9 PRIDE:Q3SWX9 Ensembl:ENSBTAT00000009607 GeneID:540966
KEGG:bta:540966 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 InParanoid:Q3SWX9 KO:K06670 OMA:VPREEQQ
OrthoDB:EOG47PX5K NextBio:20878937 Gene3D:1.10.10.580
InterPro:IPR023093 Uniprot:Q3SWX9
Length = 630
Score = 168 (64.2 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Score = 89 (36.4 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 574 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR 626
Score = 46 (21.3 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 191 IEEDTETQLNF-TSREQTQIPKLMPSPPHQDEPQRADVIHDQH--PEQQNQQ 239
+EE + Q + TSR MP PP Q ++A I + P QQ +Q
Sbjct: 445 LEEPSRLQESMETSRTNLD-ESAMPPPPPQGVKRKAGQIDPEPMIPPQQAEQ 495
Score = 46 (21.3 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 194 DTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQH--PEQQNQQSNGSKE-EARQD 250
D E + EQ +IP + PP ++ P +I + PE++ ++ ++ E +D
Sbjct: 483 DPEPMIPPQQAEQMEIPPV-ELPP-EEPPNICQLIPELELLPEKEKEKEKEKEDDEEEED 540
Query: 251 QQRKG 255
+ G
Sbjct: 541 EDASG 545
>UNIPROTKB|F1NYD0 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0071168 "protein localization to
chromatin" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006357 GO:GO:0000228 GO:GO:0071168
GeneTree:ENSGT00390000011606 OMA:VPREEQQ Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02022645 IPI:IPI00679990
Ensembl:ENSGALT00000025968 Uniprot:F1NYD0
Length = 633
Score = 168 (64.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/166 (32%), Positives = 84/166 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQN 158
+Q L P+ QQ FS+ V++ ++ VG LQ+
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVGNISILQD 157
Score = 89 (36.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 577 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPR 629
>ZFIN|ZDB-GENE-060503-223 [details] [associations]
symbol:rad21b "RAD21 homolog (S. pombe) b"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 ZFIN:ZDB-GENE-060503-223 EMBL:CR786578 GO:GO:0000228
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:CR848704 IPI:IPI00491569
RefSeq:NP_001038585.1 UniGene:Dr.84558 Ensembl:ENSDART00000051717
Ensembl:ENSDART00000132800 GeneID:566831 KEGG:dre:566831 CTD:566831
NextBio:20888396 Uniprot:Q1L8E1
Length = 637
Score = 166 (63.5 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ F++ V++ ++ VG +L L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FTLNQSRVEEITMREEVG---NLSLLQENDFADFGMDDR 168
Score = 86 (35.3 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL +L N+K AA FY VL +++ Q++PY DI+ + G R
Sbjct: 581 GAESI-SLLDLCRNNNKKQAAAKFYSFLVLKKQQAVELRQDEPYSDIIATPGPR 633
Score = 43 (20.2 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 198 QLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEARQDQQR 253
Q+ E I +L+P E + D E++ QS +E R+ +R
Sbjct: 510 QVELPPEEPVNIAQLIPDLDLIGEKSKDKKDDDDEEEEEEGQSGDQDQEERRWNKR 565
>UNIPROTKB|O93310 [details] [associations]
symbol:rad21 "Double-strand-break repair protein rad21
homolog" species:8355 "Xenopus laevis" [GO:0071168 "protein
localization to chromatin" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
GO:GO:0007059 GO:GO:0000775 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0000228 GO:GO:0071168 CTD:5885
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF051786 RefSeq:NP_001083807.1 UniGene:Xl.53864
ProteinModelPortal:O93310 IntAct:O93310 GeneID:399129
KEGG:xla:399129 Uniprot:O93310
Length = 629
Score = 163 (62.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 58/188 (30%), Positives = 90/188 (47%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I+ P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFL-NYPNATATMEFQQNAY----FSMRLDDVDDSFLQSN----VGVDD-SLQNLHQA 162
+Q L + + +F N +MR + + + LQ N G+DD + A
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVSNINILQDNDFGDFGMDDREMMREGSA 176
Query: 163 NVDDITLT 170
DD+ T
Sbjct: 177 FEDDMLTT 184
Score = 91 (37.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 30/118 (25%), Positives = 44/118 (37%)
Query: 447 ENPSRFPDPNFRLSRLSERSSTPDXXXXXXXXXXXXXXXXXXXXXXDKITDSIRMQMKSH 506
E P D L+ L E+ D +K T + ++
Sbjct: 509 EEPQSISDLIPELNLLPEKEKEKDEEEEEEEEDTTGTEQDQEERRWNKRTQQMLHGLQRV 568
Query: 507 FEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + SL +L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 569 LAKTGAESI-SLLDLCRNTNRKQAAAKFYSFLVLKKQQAIELTQREPYSDIVATPGPR 625
>ZFIN|ZDB-GENE-030131-994 [details] [associations]
symbol:rad21a "RAD21 homolog (S. pombe) a"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 ZFIN:ZDB-GENE-030131-994 GO:GO:0043565
GO:GO:0006357 GO:GO:0043280 GO:GO:0000228 GO:GO:0007064
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:BC045311 IPI:IPI01005011 RefSeq:NP_955889.1 UniGene:Dr.94731
ProteinModelPortal:Q7ZW30 STRING:Q7ZW30 GeneID:322275
KEGG:dre:322275 CTD:322275 InParanoid:Q7ZW30 NextBio:20807742
ArrayExpress:Q7ZW30 Uniprot:Q7ZW30
Length = 643
Score = 164 (62.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 51/159 (32%), Positives = 81/159 (50%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEDNREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVG 151
+Q L P+ QQ F++ V++ ++ VG
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FTLNQSRVEEITMREEVG 150
Score = 78 (32.5 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
GA + L L N+K AA FY VL + + Q +PY DI+ + G R
Sbjct: 587 GAQSI-GLLELCRNNNKKQAAAKFYSFLVLKKQQAIDLTQTEPYSDIIAAPGPR 639
Score = 44 (20.5 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 198 QLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPE-QQNQQSNGSKEEAR---QDQQR 253
Q+ + T + +L+P DE + D E ++ Q + +EE R + QQ
Sbjct: 516 QVELPPEDTTNLSRLIPELDLLDEKSKDKDKDDSDEEGEEGQGGDQDQEERRWNKRTQQM 575
Query: 254 KGPLKRKTRKQAA 266
L+R K A
Sbjct: 576 LHGLQRVVAKTGA 588
>WB|WBGene00004737 [details] [associations]
symbol:scc-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040002 "collagen
and cuticulin-based cuticle development" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0007130 "synaptonemal complex assembly"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0008278 "cohesin complex"
evidence=IPI] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0003684 GO:GO:0040011 GO:GO:0040035
GO:GO:0045132 GO:GO:0040002 EMBL:FO081114 GO:GO:0000228
GO:GO:0007130 GO:GO:0008278 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
PIR:G88130 RefSeq:NP_494836.1 ProteinModelPortal:Q19325 SMR:Q19325
DIP:DIP-24317N IntAct:Q19325 MINT:MINT-226784 STRING:Q19325
PaxDb:Q19325 EnsemblMetazoa:F10G7.4 GeneID:173808
KEGG:cel:CELE_F10G7.4 UCSC:F10G7.4 CTD:173808 WormBase:F10G7.4
HOGENOM:HOG000017446 InParanoid:Q19325 NextBio:881199
Uniprot:Q19325
Length = 645
Score = 139 (54.0 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 42/133 (31%), Positives = 62/133 (46%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+ +LA+K L ++W+AA K+ + EE++ P V MALR G L+
Sbjct: 1 MFYAQFVLAKKGPLAKVWLAAHWEKKLTKAQIFETDVPQAIEEVIRPKVKMALRTVGHLL 60
Query: 61 GGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQFLNYP 120
G+V +Y KK A T A + ++ E V +PE E + ED F++
Sbjct: 61 LGIVRIYSKKTRYLLA-DTNEAYQKMKI-NFRNGFSFE-VDIPENAEIE-EDFSNFIDKY 116
Query: 121 NATATMEFQQNAY 133
N T EF Y
Sbjct: 117 NITVP-EFHDADY 128
Score = 94 (38.1 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 499 IRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDIL 558
I ++ + E G S+ A NRK AA FY LA S + V+Q++PYG+I+
Sbjct: 551 ILKKVSADIETSGQADFSSVT--ATAKNRKQAAEQFYSLLTLAKSQAISVDQSEPYGEIV 608
Query: 559 ISRG 562
I G
Sbjct: 609 IRPG 612
Score = 52 (23.4 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 23/102 (22%), Positives = 42/102 (41%)
Query: 179 NADTYDRFERFDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADVIHDQHPEQQNQ 238
N + R+ R + E LN+T +E + PS Q EP D+ ++ ++ Q
Sbjct: 389 NRELLQRYRRCLVTR--EFDLNYTMQELSDSSSFTPSMEAQAEPWE-DLNLNEDIQEDIQ 445
Query: 239 QSNGSKEEARQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEV 280
+ +E D + R+ ++ F ++D P EV
Sbjct: 446 AQGPAVDEFFNDVRMDDDDDRQPAQEMDFGDNFD---FPQEV 484
Score = 42 (19.8 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 259 RKTRKQAAFAMDYD-QTMIPGEVYQSWLKDASD 290
RK R++ A + D +TMI + ++ +D SD
Sbjct: 321 RKKRQRKARKLIVDAETMISNDAFREQQEDFSD 353
>UNIPROTKB|E5RFV8 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00980208
Ensembl:ENST00000517485 ArrayExpress:E5RFV8 Bgee:E5RFV8
Uniprot:E5RFV8
Length = 225
Score = 169 (64.5 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 63/215 (29%), Positives = 102/215 (47%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Query: 173 FDTYQANADTYDRFERFDIEEDTETQLNFTSREQT 207
+ +A FE D+ T T EQ+
Sbjct: 169 EIMREGSA-----FEDDDMLVSTTTSNLLLESEQS 198
>UNIPROTKB|E5RIN7 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00982810
Ensembl:ENST00000520992 ArrayExpress:E5RIN7 Bgee:E5RIN7
Uniprot:E5RIN7
Length = 228
Score = 169 (64.5 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 63/215 (29%), Positives = 102/215 (47%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+Q L P+ QQ FS+ V++ ++ VG ++ L + + D + +R
Sbjct: 117 FDQPL--PDLDDIDVAQQ---FSLNQSRVEEITMREEVG---NISILQENDFGDFGMDDR 168
Query: 173 FDTYQANADTYDRFERFDIEEDTETQLNFTSREQT 207
+ +A FE D+ T T EQ+
Sbjct: 169 EIMREGSA-----FEDDDMLVSTTTSNLLLESEQS 198
>UNIPROTKB|Q9H4I0 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9606 "Homo sapiens" [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0070197 "attachment of
telomeric heterochromatin to nuclear envelope" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISS] [GO:0005694
"chromosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0007128 "meiotic prophase I" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007059 GO:GO:0000228 GO:GO:0007128 EMBL:AL136531
GO:GO:0030893 EMBL:AL031665 HOGENOM:HOG000233800 HOVERGEN:HBG059956
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 EMBL:BC157891
EMBL:BC171911 IPI:IPI00878979 IPI:IPI00916789 RefSeq:NP_001130038.2
UniGene:Hs.713451 ProteinModelPortal:Q9H4I0 SMR:Q9H4I0
PhosphoSite:Q9H4I0 DMDM:259016327 PaxDb:Q9H4I0 PRIDE:Q9H4I0
Ensembl:ENST00000381882 Ensembl:ENST00000402452
Ensembl:ENST00000409241 GeneID:642636 KEGG:hsa:642636
UCSC:uc010gab.1 GeneCards:GC20P001206 HGNC:HGNC:16271 HPA:HPA053282
neXtProt:NX_Q9H4I0 PharmGKB:PA34171 eggNOG:NOG301899 OMA:GMQSFSL
OrthoDB:EOG49S67J NextBio:114018 ArrayExpress:Q9H4I0 Bgee:Q9H4I0
Genevestigator:Q9H4I0 Uniprot:Q9H4I0
Length = 556
Score = 163 (62.4 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 51/178 (28%), Positives = 81/178 (45%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + E+IL+P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE-IKETDVE 111
GVV +Y +K + A K K+ P L LPK +A A+TLPE + D +
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ 120
Query: 112 DLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITL 169
++ + T + D+ D F + G + + H D+I L
Sbjct: 121 NMNAIDVSEHFTQNQSRPEEITLRENFDN-DLIFQAESFGEESEILRRHSFFDDNILL 177
Score = 74 (31.1 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY VL +++ Q+ PY DI+ + G
Sbjct: 505 SLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQSAPYADIIATMG 550
>UNIPROTKB|F1PWJ5 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GeneTree:ENSGT00390000011606
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 OMA:GMQSFSL
EMBL:AAEX03013845 RefSeq:XP_851946.2 Ensembl:ENSCAFT00000010977
GeneID:609572 KEGG:cfa:609572 Uniprot:F1PWJ5
Length = 555
Score = 158 (60.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 40/112 (35%), Positives = 60/112 (53%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + E+I++P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKIISPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A A+TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKENFEAAYSAITLPE 112
Score = 76 (31.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY VL +++ Q+ PY DI+ + G
Sbjct: 504 SLMKLCRNSDRKQAAAKFYSFLVLKKQQAIELSQSAPYADIIATVG 549
>UNIPROTKB|D2HSB3 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9646 "Ailuropoda melanoleuca"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005694 "chromosome"
evidence=ISS] [GO:0007128 "meiotic prophase I" evidence=ISS]
[GO:0030893 "meiotic cohesin complex" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0007059 GO:GO:0000228 GO:GO:0007128
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:GL193270
RefSeq:XP_002925456.1 GeneID:100475087 KEGG:aml:100475087
CTD:642636 Uniprot:D2HSB3
Length = 554
Score = 156 (60.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 51/179 (28%), Positives = 84/179 (46%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + E+IL+ V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE-IKETDVE 111
GVV +Y +K + A K K+ P L LPK +A A+TLPE + D +
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDTQ 120
Query: 112 DLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQS-NVGVDDSLQNLHQANVDDITL 169
++ + T + ++R D +D Q+ + G + + H D+I L
Sbjct: 121 NVNAIDVSEHFTQNQSKPEE--ITLREDYSNDLLFQAGSFGEETEILRRHSFFDDNILL 177
Score = 76 (31.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY VL +++ Q+ PY DI+ + G
Sbjct: 503 SLMKLCRNSDRKQAAAKFYSFLVLKKQQAIELSQSDPYADIIATVG 548
>UNIPROTKB|E5RJK5 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00984166
Ensembl:ENST00000519837 ArrayExpress:E5RJK5 Bgee:E5RJK5
Uniprot:E5RJK5
Length = 124
Score = 160 (61.4 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 41/112 (36%), Positives = 62/112 (55%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE 112
>UNIPROTKB|E5RJW1 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00981513
Ensembl:ENST00000522699 ArrayExpress:E5RJW1 Bgee:E5RJW1
Uniprot:E5RJW1
Length = 120
Score = 160 (61.4 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 41/112 (36%), Positives = 62/112 (55%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKKI-----EINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE 112
>TAIR|locus:2164501 [details] [associations]
symbol:SYN2 species:3702 "Arabidopsis thaliana"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP;RCA] [GO:0006302
"double-strand break repair" evidence=RCA;IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010564
"regulation of cell cycle process" evidence=RCA] [GO:0016444
"somatic cell DNA recombination" evidence=RCA] [GO:0016568
"chromatin modification" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051726 "regulation
of cell cycle" evidence=RCA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0007059 GO:GO:0051301 GO:GO:0007067 GO:GO:0006302
EMBL:AB011477 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF281154 EMBL:AF400126 EMBL:AF400127 IPI:IPI00520467
IPI:IPI00524230 RefSeq:NP_568586.2 RefSeq:NP_851110.1
UniGene:At.9228 ProteinModelPortal:Q9FQ20 STRING:Q9FQ20
PaxDb:Q9FQ20 PRIDE:Q9FQ20 EnsemblPlants:AT5G40840.2 GeneID:834084
KEGG:ath:AT5G40840 TAIR:At5g40840 eggNOG:NOG315638
HOGENOM:HOG000064652 InParanoid:Q9FQ20 OMA:AIWVAAY PhylomeDB:Q9FQ20
ProtClustDB:CLSN2680390 Genevestigator:Q9FQ20 GermOnline:AT5G40840
GO:GO:0000798 Uniprot:Q9FQ20
Length = 810
Score = 126 (49.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 62/248 (25%), Positives = 105/248 (42%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVP-MALRLSGIL 59
MFYSH L++RK LG IW+AA K+ + ++IL + + R+ L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 MGGVVIVYEKKIEI-----NAAW---KTKVARDPTLLPKGKS-QAKRE--AVTLPEIKET 108
+ GVV +Y KK++ N A K VA++ G S A E ++ LPE E
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120
Query: 109 DVEDLEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDIT 168
D DL ++ + + L D Q +D + ++ + ++++
Sbjct: 121 DAFDLGVLEDFHGGNV------KPHEDITLKDGS----QETERMD--MYSMERFDMEEDL 168
Query: 169 LTERFDTYQANADTYDRFERF--DIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRAD 226
L +T+ N + ++ E F D+E D E + T E+ + + P +EP R
Sbjct: 169 LFTFHETFSTNHNE-NKHESFAHDMELDAENVRDTT--EEASVRVVEAEPLDSNEPSRDH 225
Query: 227 VIHDQHPE 234
+H E
Sbjct: 226 QNASRHRE 233
Score = 102 (41.0 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
SL L G +K +A LFY+T VL T ++V+QN PY D+ + R R
Sbjct: 758 SLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVSR 805
Score = 47 (21.6 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 259 RKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDIXXXXXXXXXASTDLLSTMKIASLMEMP 318
R +RK+ +D D+ +IP +V + ++D+S + T + A+ P
Sbjct: 457 RVSRKRKCL-ID-DEVIIPNKVMKEMIEDSSKLLAKRRNVPHTDCPERRTKRFAN----P 510
Query: 319 PVVLIEDLFTKGNREIH--YPDPL-LKLWMKSTQPPHD 353
+E L G+ ++ + P+ LK W +T P D
Sbjct: 511 FRSFLEPLIQYGSSDLQSLFCQPIKLKNWA-TTGTPKD 547
>ZFIN|ZDB-GENE-061103-505 [details] [associations]
symbol:rad21l1 "RAD21-like 1 (S. pombe)"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
ZFIN:ZDB-GENE-061103-505 GO:GO:0000228 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636
EMBL:CU467960 EMBL:BC125933 IPI:IPI00771566 RefSeq:NP_001073519.1
UniGene:Dr.84879 Ensembl:ENSDART00000079631 GeneID:571082
KEGG:dre:571082 InParanoid:A0JMM5 OMA:TLKEDFG OrthoDB:EOG4GB773
NextBio:20890409 Uniprot:A0JMM5
Length = 546
Score = 151 (58.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 62/247 (25%), Positives = 105/247 (42%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+ +++ +L +IW+AA K+ + +EIL+P + + LR SG L+
Sbjct: 1 MFYAQLFTSKRGTLAKIWLAAHWEKKITKAHVFECDLETTIKEILSPQIKIGLRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDP--TLLPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K +A K KVA P T LP +A + +TLPE D D
Sbjct: 61 LGVVRIYSRKTRYLLADCSDALVKIKVAFRPGQTDLPDDAMEATLKTITLPE----DFTD 116
Query: 113 LEQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTER 172
+ L N ++ +FS+ +D L+ N G + +L + + +
Sbjct: 117 FDSQLPDLNTIDVVD-----HFSLNQCRTEDITLKENFG--NLFLSLERIGEEMQSYQGL 169
Query: 173 FD-TYQANADTYDRFER----FDIEEDTETQLNFTSREQTQIPKLMPSPPHQDEPQRADV 227
FD ++ + D + E DI +T + I +L +PP P +
Sbjct: 170 FDQSFSVHGDCFGDEEMAVDLIDIIANTAEDTLMSDFNGNSINELPATPP----PTAVNA 225
Query: 228 IHDQHPE 234
+ + PE
Sbjct: 226 VEPEKPE 232
Score = 75 (31.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/111 (24%), Positives = 39/111 (35%)
Query: 452 FPDPNFRLSRLSERSSTPDXXXXXXXXXXXXXXXXXXXXXXDKITDSIRMQMKSHFEMPG 511
+P+P +S LS S + +KS P
Sbjct: 432 YPEPQSEISTLSHPSVEMRETPLVTKTQSVLGSQDLEDRRMTSRAHDLLQALKSQDSSPD 491
Query: 512 APKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
A V SL+ L +R A LF+ VL L + Q+ PY DI+ + G
Sbjct: 492 A--VYSLHALCESGSRSYVAALFFCMLVLRKQQFLNLHQSAPYSDIIATPG 540
>UNIPROTKB|G4MR40 [details] [associations]
symbol:MGG_09891 "Double-strand-break repair protein rad21"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CM001231 GO:GO:0043581 GO:GO:0000228
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_003709984.1 EnsemblFungi:MGG_09891T0 GeneID:2680935
KEGG:mgr:MGG_09891 Uniprot:G4MR40
Length = 625
Score = 155 (59.6 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 54/175 (30%), Positives = 84/175 (48%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPA--VPMALRLSGI 58
MFYS LL L ++W+AA M K+++ E+I+ P+ P+ALRLSG
Sbjct: 1 MFYSDTLLRTTGPLSRVWLAANMERKLSKAHILQSNLRHSVEQIIQPSEEAPLALRLSGQ 60
Query: 59 LMGGVVIVYEKKI-----EINAA-WKTKVA-RDP--TLLPKGKSQAKREAVTLPE-IKET 108
L+ GVV +Y +K + N A K K+A R LP RE++ L + I
Sbjct: 61 LLLGVVRIYSRKARYLLEDCNEALMKIKMAFRSSGNNDLPTNLHLPNRESLMLQDRITPH 120
Query: 109 D-VEDL--EQFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLH 160
D ++DL E LN+ + T + + + S R ++ + F S D+S L+
Sbjct: 121 DNLDDLPPEPTLNFDDLTTSQQLGRKGRVSNREINLQEDFNNSQFLQDESRNELN 175
Score = 66 (28.3 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 530 AAMLFYQTCVLATSDVLKVEQNKPY--GDILISRGKR 564
A +F++ VLAT D +KVEQ + G I I RGKR
Sbjct: 554 ATKMFFECLVLATKDAIKVEQPEGVLGGPIRI-RGKR 589
Score = 45 (20.9 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 192 EEDTETQLNFTSREQTQIPKLMPSPPHQDE 221
E DT L+F EQ +IP + P D+
Sbjct: 225 ERDTSLGLDFGDDEQVRIPDVEGDIPMFDD 254
>UNIPROTKB|E1B9J3 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OMA:GMQSFSL EMBL:DAAA02036365 IPI:IPI00704766
Ensembl:ENSBTAT00000001812 Uniprot:E1B9J3
Length = 557
Score = 156 (60.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 40/112 (35%), Positives = 59/112 (52%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + E+IL+P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A +TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKESFEAAYSTITLPE 112
Score = 68 (29.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK A FY +L +++ Q+ PY DI+ + G
Sbjct: 506 SLMKLCRNSDRKQTAAKFYSFLMLKKHQAIELSQSAPYADIIATVG 551
>MGI|MGI:3652039 [details] [associations]
symbol:Rad21l "RAD21-like (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005694 "chromosome" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
[GO:0070197 "attachment of telomeric heterochromatin to nuclear
envelope" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 MGI:MGI:3652039 GO:GO:0007059
GO:GO:0007283 GO:GO:0006302 GO:GO:0000800 GO:GO:0007129
GO:GO:0007128 GO:GO:0070197 GO:GO:0030893
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093
eggNOG:NOG301899 OMA:GMQSFSL OrthoDB:EOG49S67J EMBL:HQ603828
EMBL:AB602048 EMBL:AB574185 EMBL:AL928988 IPI:IPI00752563
RefSeq:NP_001108149.1 UniGene:Mm.473683 ProteinModelPortal:A2AU37
PhosphoSite:A2AU37 PRIDE:A2AU37 Ensembl:ENSMUST00000096439
Ensembl:ENSMUST00000180195 GeneID:668929 KEGG:mmu:668929
UCSC:uc012cfx.1 CTD:668929 InParanoid:A2AU37 NextBio:435965
Genevestigator:A2AU37 Uniprot:A2AU37
Length = 552
Score = 150 (57.9 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + ++I++P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A +TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPE 112
Score = 73 (30.8 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY +L +++ Q+ PY DI+ + G
Sbjct: 501 SLKKLCRNSDRKQAAAKFYTLLILKKHRAIELSQSVPYADIIATVG 546
>RGD|1587557 [details] [associations]
symbol:Rad21l1 "RAD21-like 1 (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005694 "chromosome" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0007129 "synapsis"
evidence=ISO] [GO:0007283 "spermatogenesis" evidence=ISO]
[GO:0030893 "meiotic cohesin complex" evidence=ISO] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=ISO] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 RGD:1587557 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG49S67J IPI:IPI00763893 Ensembl:ENSRNOT00000055455
UCSC:RGD:1587557 Uniprot:D4ADQ7
Length = 550
Score = 150 (57.9 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + ++I++P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A +TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPE 112
Score = 70 (29.7 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY +L +++ Q+ PY D++ + G
Sbjct: 499 SLIKLCRNSDRKQAAAKFYTLLILKKHRAIELSQSAPYADVIATVG 544
>POMBASE|SPCC338.17c [details] [associations]
symbol:rad21 "mitotic cohesin complex, non-SMC subunit
Rad21 (kleisin)" species:4896 "Schizosaccharomyces pombe"
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IMP] [GO:0008608 "attachment of spindle
microtubules to kinetochore" evidence=IMP] [GO:0030892 "mitotic
cohesin complex" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 PomBase:SPCC338.17c
GO:GO:0000775 GO:GO:0051301 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0000724 GO:GO:0000794 GO:GO:0008608 GO:GO:0007064
GO:GO:0030892 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:M96437 PIR:S35547 RefSeq:NP_588151.1
ProteinModelPortal:P30776 IntAct:P30776 STRING:P30776
EnsemblFungi:SPCC338.17c.1 GeneID:2539447 KEGG:spo:SPCC338.17c
OMA:VEACNTI OrthoDB:EOG4C2MKJ NextBio:20800609 PMAP-CutDB:P30776
Uniprot:P30776
Length = 628
Score = 124 (48.7 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNP-AVPMALRLSGIL 59
MFYS +L++K L ++W+AA K+++ I+ PMALRLSG L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 MGGVVIVYEKK 70
M GVV +Y +K
Sbjct: 61 MLGVVRIYSRK 71
Score = 89 (36.4 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 497 DSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQN 551
DS+R + + E KV S L+AG NR+ A LF+ VLAT DV+ V+Q+
Sbjct: 558 DSLRNKWDPYTE---GEKV-SFQTLSAGCNREEAVQLFFDVLVLATKDVISVKQD 608
Score = 51 (23.0 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 138 LDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTET 197
L VDD L ++G+DD L + AN I E+ +T + + DI ED +
Sbjct: 278 LAPVDD--LNLDLGLDDLLGDEQGANAPAIEADEQAETSSIHLPS-------DIMEDDSS 328
Query: 198 QLNFTSREQTQIPKLMPSPPHQD-EPQR 224
+ E+ Q+ + +P + PQ+
Sbjct: 329 RPAAAGVEEGQVVESATAPQQEKINPQK 356
>WB|WBGene00000591 [details] [associations]
symbol:coh-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0007130
"synaptonemal complex assembly" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003684 GO:GO:0040011 GO:GO:0045132 GO:GO:0000228
GO:GO:0007130 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:FO080256
PIR:T16582 RefSeq:NP_509262.1 ProteinModelPortal:Q21306 SMR:Q21306
STRING:Q21306 PaxDb:Q21306 EnsemblMetazoa:K08A8.3 GeneID:181003
KEGG:cel:CELE_K08A8.3 UCSC:K08A8.3 CTD:181003 WormBase:K08A8.3
HOGENOM:HOG000020951 InParanoid:Q21306 OMA:DIEQKEP NextBio:911936
Uniprot:Q21306
Length = 652
Score = 112 (44.5 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+ +L++K L ++W+AA K+++ EI+ P+ +ALR +G L+
Sbjct: 56 MFYADFVLSKKGPLSKVWLAAHWEKKLSKAQIFETDVDEAVNEIMQPSQKLALRTTGHLL 115
Query: 61 GGVVIVYEKK 70
G+ VY +K
Sbjct: 116 LGICRVYSRK 125
Score = 93 (37.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 514 KVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
+VE L G +RK AA FY L + + +EQ +PYGDI+I G
Sbjct: 596 QVELDEMLKKGTSRKVAAAKFYSLLCLKKNQCIDIEQKEPYGDIMIKAG 644
Score = 55 (24.4 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 28/127 (22%), Positives = 58/127 (45%)
Query: 139 DDVDDS--FLQSNVGV----DDSLQNLHQA---NV-DDITLTERFDTYQANADTYDRFER 188
DDVD+ ++++ +G+ ++ LQ Q +V DD + + FD D +D+ +
Sbjct: 459 DDVDEKNEWIKNALGLREIGEEELQQQQQEMDMHVQDDSSYVDDFDEVPP-LD-FDQLDM 516
Query: 189 FDIEEDTETQLNFTSREQTQIPKLMP-SPPHQDEPQRADVIHDQHPEQQNQQSNGSKEEA 247
D+ + + +N + Q L P +P +DE + P ++ ++ + KEE
Sbjct: 517 MDMPQSMD-DINMVDDDVPQRNPLSPFAPMVEDE--------EMSPSEKRKKRDEEKEEP 567
Query: 248 RQDQQRK 254
D+ +
Sbjct: 568 ETDEDNR 574
Score = 43 (20.2 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 248 RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWLKDASDI 291
RQ Q+R ++ RK+ +D D MI GE + + D SDI
Sbjct: 366 RQAQKRAMQKEQNMRKRR---VD-DVKMITGEEMKGNMADFSDI 405
Score = 41 (19.5 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 24/129 (18%), Positives = 52/129 (40%)
Query: 157 QNLHQANVDDITLTERFDTYQANADTYDRFERFDIEEDTETQLNFTSREQTQI----PKL 212
QN+ + VDD+ + + AD D R D+ + + R + P +
Sbjct: 377 QNMRKRRVDDVKMITGEEMKGNMADFSDILTRLDLAPPSRKLMMGKKRSHAEYMHHNPGM 436
Query: 213 MPSPPHQD---EPQRADVI--HDQHPEQQNQQSN--GSKEEARQD-QQRKGPLKRKTRKQ 264
+ ++ + Q V+ HD E+ N G +E ++ QQ++ + +
Sbjct: 437 IGFSKNKQFIRKYQSYLVVTKHDDVDEKNEWIKNALGLREIGEEELQQQQQEMDMHVQDD 496
Query: 265 AAFAMDYDQ 273
+++ D+D+
Sbjct: 497 SSYVDDFDE 505
>UNIPROTKB|E1C938 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00584752
Ensembl:ENSGALT00000009982 Uniprot:E1C938
Length = 602
Score = 148 (57.2 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 51/160 (31%), Positives = 75/160 (46%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY H L+ R+ L +IW+AA K+ + ++I++P +ALR SG L+
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + A K K A P L LP+ +A +++TLPE + D
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPE----EFHD 116
Query: 113 LEQFLNYPNATATME-FQQNAYFSMRLDDVD-DSFLQSNV 150
E L NA E F N R +D+ +SNV
Sbjct: 117 FETTLPDLNAIDVAEHFTLN---QSRAEDITLKEDYESNV 153
Score = 64 (27.6 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 494 KITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKP 553
K T + ++ H G SL L +RK A+ FY VL V+++ Q P
Sbjct: 529 KRTLQLLKTLQQHLNKSGVNSF-SLRELCRKNSRKEVAVKFYIFLVLQKQMVVELVQCAP 587
Query: 554 YGDILISRGK 563
+ D+ + G+
Sbjct: 588 FADVTATAGR 597
>UNIPROTKB|E1BTV6 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00818854
Ensembl:ENSGALT00000039396 Uniprot:E1BTV6
Length = 613
Score = 148 (57.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 51/160 (31%), Positives = 75/160 (46%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY H L+ R+ L +IW+AA K+ + ++I++P +ALR SG L+
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + A K K A P L LP+ +A +++TLPE + D
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPE----EFHD 116
Query: 113 LEQFLNYPNATATME-FQQNAYFSMRLDDVD-DSFLQSNV 150
E L NA E F N R +D+ +SNV
Sbjct: 117 FETTLPDLNAIDVAEHFTLN---QSRAEDITLKEDYESNV 153
Score = 64 (27.6 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 494 KITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKP 553
K T + ++ H G SL L +RK A+ FY VL V+++ Q P
Sbjct: 540 KRTLQLLKTLQQHLNKSGVNSF-SLRELCRKNSRKEVAVKFYIFLVLQKQMVVELVQCAP 598
Query: 554 YGDILISRGK 563
+ D+ + G+
Sbjct: 599 FADVTATAGR 608
>UNIPROTKB|E1BTU9 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000800 "lateral element" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0007128
"meiotic prophase I" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=IEA] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AADN02019132 IPI:IPI00819464 Ensembl:ENSGALT00000039400
OMA:EITHVCI Uniprot:E1BTU9
Length = 630
Score = 148 (57.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 51/160 (31%), Positives = 75/160 (46%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY H L+ R+ L +IW+AA K+ + ++I++P +ALR SG L+
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + A K K A P L LP+ +A +++TLPE + D
Sbjct: 61 LGVVRIYHRKTKYLLSDCSEALTKMKTAFRPGLVDLPEESCEAAYQSITLPE----EFHD 116
Query: 113 LEQFLNYPNATATME-FQQNAYFSMRLDDVD-DSFLQSNV 150
E L NA E F N R +D+ +SNV
Sbjct: 117 FETTLPDLNAIDVAEHFTLN---QSRAEDITLKEDYESNV 153
Score = 64 (27.6 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 494 KITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKP 553
K T + ++ H G SL L +RK A+ FY VL V+++ Q P
Sbjct: 557 KRTLQLLKTLQQHLNKSGVNSF-SLRELCRKNSRKEVAVKFYIFLVLQKQMVVELVQCAP 615
Query: 554 YGDILISRGK 563
+ D+ + G+
Sbjct: 616 FADVTATAGR 625
>UNIPROTKB|F1S874 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006910 Pfam:PF04825 GO:GO:0005634 GO:GO:0007128
GO:GO:0030893 GeneTree:ENSGT00390000011606 OMA:GMQSFSL
EMBL:FP236274 Ensembl:ENSSSCT00000007870 Uniprot:F1S874
Length = 469
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 41/112 (36%), Positives = 60/112 (53%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + E+IL+P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A A+TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKESFEATYTAITLPE 112
>ASPGD|ASPL0000069046 [details] [associations]
symbol:AN7465 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0008608 "attachment of
spindle microtubules to kinetochore" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030892 "mitotic cohesin complex"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ RefSeq:XP_680734.1 ProteinModelPortal:Q5AW65
STRING:Q5AW65 EnsemblFungi:CADANIAT00000558 GeneID:2869516
KEGG:ani:AN7465.2 HOGENOM:HOG000162683 OMA:DATKMFF Uniprot:Q5AW65
Length = 584
Score = 120 (47.3 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRXXXXXXXXXXXCEEILNPA-VPMALRLSGIL 59
MFYS LL++ L ++W++A + K+++ I++ PMALRLSG L
Sbjct: 1 MFYSETLLSKTGPLARVWLSANLERKLSKSHILQSDIESSVSAIVDQGQAPMALRLSGQL 60
Query: 60 MGGVVIVYEKK 70
+ GVV +Y +K
Sbjct: 61 LLGVVRIYSRK 71
Score = 67 (28.6 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 527 RKAAAMLFYQTCVLATSDVLKVEQ--NKPYGDILISRGKR 564
R A +F++ VLAT D ++VEQ N G I IS GKR
Sbjct: 524 RADATKMFFEVLVLATKDAVQVEQRSNTVGGPIKIS-GKR 562
Score = 41 (19.5 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 194 DTETQLNFTSREQTQIPKLMPSPPHQDEPQRAD 226
D ET L+F+ ++ + P+P +E +D
Sbjct: 183 DDETNLSFSHDFSMEVGRDAPAPRPMEEDNFSD 215
Score = 38 (18.4 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 302 STDLLSTMKIA-SLMEMPPVVLIEDLFTKGNREIHYPDPL 340
+ DL ++ +A + +P V+ DLF + + P PL
Sbjct: 95 NNDLTTSAVVAPGGITLPDVLTEADLFMNLDSSLLIPQPL 134
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 138 LDDVDDSFLQSNVGVDD 154
L+D D LQ N+G+DD
Sbjct: 170 LEDPGD--LQLNLGLDD 184
>UNIPROTKB|E1BL69 [details] [associations]
symbol:REC8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007129 "synapsis" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001556
"oocyte maturation" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000778 "condensed nuclear chromosome
kinetochore" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0000780 GO:GO:0007286 GO:GO:0001673
GO:GO:0001556 GO:GO:0000800 GO:GO:0007141 GO:GO:0007129
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093 CTD:9985
KO:K13054 GeneTree:ENSGT00390000011379 OMA:ARVFYLL
EMBL:DAAA02028032 IPI:IPI00712766 RefSeq:NP_001178217.1
UniGene:Bt.100955 Ensembl:ENSBTAT00000003504 GeneID:516291
KEGG:bta:516291 NextBio:20872182 Uniprot:E1BL69
Length = 587
Score = 97 (39.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 512 APKVESLNNLAAGLN-RKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
A + ++L L+ R+ AA +FY VLAT +L+V+Q +PYG +LI G R
Sbjct: 530 ADREPDFSSLVPPLSPRRMAARVFYLLLVLATQQILRVKQEEPYGRLLIQPGPR 583
Score = 71 (30.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 27/86 (31%), Positives = 37/86 (43%)
Query: 1 MFYSHQLLARKAS-LGQIWMAATMHAKMNRXXXXXXXXXXXCEEILN-------PAVPMA 52
MFY +L R IW+AAT ++ + CEEILN P +P A
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGCRLVKREYLNVNVVKTCEEILNYVLVRVQPPLPGA 60
Query: 53 LR------LSGILMGGVVIVYEKKIE 72
R LS L GV+ VY ++ +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQ 86
Score = 44 (20.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 315 MEMPPVVLIE---DLFTKGNREIHYPDPLLKLWMKSTQPP 351
M PP +I +LF P LL W QPP
Sbjct: 365 MVQPPERMIRTPVELFRNPTYSGWLPPELLAFWTHCAQPP 404
>UNIPROTKB|H0YLK4 [details] [associations]
symbol:REC8 "Meiotic recombination protein REC8 homolog"
species:9606 "Homo sapiens" [GO:0000778 "condensed nuclear
chromosome kinetochore" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0001556 "oocyte maturation" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007141 "male meiosis I" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0000780
GO:GO:0007286 GO:GO:0001673 GO:GO:0001556 GO:GO:0000800
GO:GO:0007141 EMBL:AL136295 GO:GO:0007129 GO:GO:0030893
Gene3D:1.10.10.580 InterPro:IPR023093 HGNC:HGNC:16879 OMA:ARVFYLL
ProteinModelPortal:H0YLK4 SMR:H0YLK4 Ensembl:ENST00000559919
PhylomeDB:H0YLK4 Bgee:H0YLK4 Uniprot:H0YLK4
Length = 546
Score = 91 (37.1 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 512 APKVESLNNLAAGLN-RKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
A + ++L + L+ R+ AA +FY VL+ +L V+Q KPYG +LI G R
Sbjct: 491 ANREPDFSSLVSPLSPRRMAARVFYLLLVLSAQQILHVKQEKPYGRLLIQPGPR 544
Score = 73 (30.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 26/86 (30%), Positives = 38/86 (44%)
Query: 1 MFYSHQLLARKAS-LGQIWMAATMHAKMNRXXXXXXXXXXXCEEILN----------PAV 49
MFY +L R IW+AAT +++ + CEEILN P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 P---MALRLSGILMGGVVIVYEKKIE 72
P +L LS L GV+ VY ++ +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQ 86
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 14/40 (35%), Positives = 15/40 (37%)
Query: 315 MEMPPVVLIE---DLFTKGNREIHYPDPLLKLWMKSTQPP 351
M PP I +LF P LL LW QPP
Sbjct: 333 MVQPPERTIRGPAELFRTPTLSGWLPPELLGLWTHCAQPP 372
>UNIPROTKB|O95072 [details] [associations]
symbol:REC8 "Meiotic recombination protein REC8 homolog"
species:9606 "Homo sapiens" [GO:0000778 "condensed nuclear
chromosome kinetochore" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0001556 "oocyte maturation" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007141 "male meiosis I" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=TAS] [GO:0007062 "sister
chromatid cohesion" evidence=TAS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
Reactome:REACT_115566 GO:GO:0000780 GO:GO:0007286 GO:GO:0007283
Reactome:REACT_111183 EMBL:CH471078 GO:GO:0001673 GO:GO:0001556
GO:GO:0007131 GO:GO:0000800 GO:GO:0007141 EMBL:AL136295
GO:GO:0007129 GO:GO:0007062 GO:GO:0030893 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AF006264 EMBL:AK001435 EMBL:AK291191
EMBL:CR457263 EMBL:AL832973 EMBL:BC004159 EMBL:BC010887
EMBL:BC019326 IPI:IPI00293487 IPI:IPI00937443 RefSeq:NP_001041670.1
RefSeq:NP_005123.2 UniGene:Hs.419259 ProteinModelPortal:O95072
SMR:O95072 STRING:O95072 PhosphoSite:O95072 PRIDE:O95072
Ensembl:ENST00000311457 GeneID:9985 KEGG:hsa:9985 UCSC:uc001wmr.3
CTD:9985 GeneCards:GC14P024641 HGNC:HGNC:16879 HPA:HPA031727
HPA:HPA031729 MIM:608193 neXtProt:NX_O95072 PharmGKB:PA162401009
eggNOG:NOG248028 HOVERGEN:HBG056766 InParanoid:O95072 KO:K13054
OrthoDB:EOG4B5P55 GenomeRNAi:9985 NextBio:37700 Bgee:O95072
CleanEx:HS_REC8 Genevestigator:O95072 GermOnline:ENSG00000100918
Uniprot:O95072
Length = 547
Score = 91 (37.1 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 512 APKVESLNNLAAGLN-RKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
A + ++L + L+ R+ AA +FY VL+ +L V+Q KPYG +LI G R
Sbjct: 492 ANREPDFSSLVSPLSPRRMAARVFYLLLVLSAQQILHVKQEKPYGRLLIQPGPR 545
Score = 73 (30.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 26/86 (30%), Positives = 38/86 (44%)
Query: 1 MFYSHQLLARKAS-LGQIWMAATMHAKMNRXXXXXXXXXXXCEEILN----------PAV 49
MFY +L R IW+AAT +++ + CEEILN P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 P---MALRLSGILMGGVVIVYEKKIE 72
P +L LS L GV+ VY ++ +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQ 86
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 14/40 (35%), Positives = 15/40 (37%)
Query: 315 MEMPPVVLIE---DLFTKGNREIHYPDPLLKLWMKSTQPP 351
M PP I +LF P LL LW QPP
Sbjct: 334 MVQPPERTIRGPAELFRTPTLSGWLPPELLGLWTHCAQPP 373
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 565 493 0.00083 119 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 611 (65 KB)
Total size of DFA: 279 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.83u 0.12s 47.95t Elapsed: 00:00:02
Total cpu time: 47.83u 0.12s 47.95t Elapsed: 00:00:02
Start: Tue May 21 06:16:42 2013 End: Tue May 21 06:16:44 2013