BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008432
(565 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana
GN=SYN1 PE=2 SV=2
Length = 627
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 288/630 (45%), Positives = 361/630 (57%), Gaps = 90/630 (14%)
Query: 7 LLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILMGGVVIV 66
LLARKA LGQIWMAAT+HAK+NRKKL+KL++I+ICEEILNP+VPMALRLSGILMGGVVIV
Sbjct: 17 LLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIV 76
Query: 67 YEKK------------IEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLE 114
YE+K +EIN AW+TK DPTLLPKGK+ A++EAVTLPE +E D D E
Sbjct: 77 YERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFE 136
Query: 115 QFLNYPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANVDDITLTERFD 174
Q N P M+FQQ + SMRL D+S + +N +D Q HQA+ ++ITL E
Sbjct: 137 QTRNVPKFGNYMDFQQ-TFISMRL---DESHVNNNPEPEDLGQQFHQADAENITLFEYHG 192
Query: 175 TYQANADTYDRFERFDIEEDTETQLNFTSREQTQIP-KLMPSPP-HQDEPQRADVIHDQH 232
++Q N +TYDRFERFDIE D ETQ+N RE +IP L+PSPP H D P+ + Q
Sbjct: 193 SFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVNPTSPQR 252
Query: 233 PEQQNQQSNGSKEEA-------RQDQQRKGPLKRKTRKQAAFAMDYDQTMIPGEVYQSWL 285
EQQ + +G E+ +++ R P K++ RK A AMDY+QT+I G VYQSWL
Sbjct: 253 QEQQENRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWL 312
Query: 286 KDASDISSRRRRKRKASTDLLSTMKIASLMEMPPVVLIEDLFTKGNREIHYPDPLLKLWM 345
+D SDI R KRK + M+ MPP L E ++ YP L +LW
Sbjct: 313 QDTSDILC-RGEKRKVRGTIRPDMESFKRANMPPTQLFE-------KDSSYPPQLYQLWS 364
Query: 346 KSTQPPHDSPSARTSPPQPPEPS--------------------------LSSPPGLGRYE 379
K+TQ S S P E S L SP + R
Sbjct: 365 KNTQVLQTSSSESRHPDLRAEQSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEILRTV 424
Query: 380 EPAAGYFLK---------------------VKPFEDIHSGVGSQSIPSSASGHGILSHNS 418
G ++ V PF +SG +S+PS+ S G S N+
Sbjct: 425 RTGKGASVESMMAGSRASPETINRQAADINVTPF---YSGDDVRSMPSTPSARGAASINN 481
Query: 419 EVNSSRS---NQKRPRSSSRHSGSGLEPVAEENPSRFPDPNFRLSRLSERSSTPDPELLV 475
SS+S N+KRP SS R GLEPVAEE P + F S L E+ T D E+L
Sbjct: 482 IEISSKSRMPNRKRPNSSPRR---GLEPVAEERPWEHREYEFEFSMLPEKRFTADKEILF 538
Query: 476 ETAPTPTPVPVTNPPPVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFY 535
ETA T T PV N + ITDSI+ +K+HFE PGAP+VESLN LA G++R AAA LF+
Sbjct: 539 ETASTQTQKPVCNQSD-EMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNAAAKLFF 597
Query: 536 QTCVLATSDVLKVEQNKPYGDILISRGKRM 565
Q+CVLAT V+KV Q +PYGDILI+RG M
Sbjct: 598 QSCVLATRGVIKVNQAEPYGDILIARGPNM 627
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
GN=SYN3 PE=2 SV=2
Length = 693
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFYSH LLARK LG +W AA +H ++ + + +N+ + I+ P VP+ALR S L+
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60
Query: 61 GGVVIVYEKKIE-------INAAWKTKVARDPTL-LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y KK++ + W K + LP+ QA E+VTLP+ D D
Sbjct: 61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120
Query: 113 LEQFLNYPNATATMEF 128
LE + T MEF
Sbjct: 121 LE------DDTLDMEF 130
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILI 559
SL+ + AG RK AA +F++T VL + ++ ++Q++PYGDI +
Sbjct: 639 SLSEILAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIAL 681
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus
GN=Rad21 PE=1 SV=3
Length = 635
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 21/171 (12%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + + + NL E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFL-NYPNATATMEFQQN----AYFSMRLDDVDDSFLQSN----VGVDD 154
+Q L + + +F N +MR + + S LQ N G+DD
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDD 167
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 579 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRF 632
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus
GN=RAD21 PE=2 SV=1
Length = 630
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 21/171 (12%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + + + NL E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFL-NYPNATATMEFQQN----AYFSMRLDDVDDSFLQSN----VGVDD 154
+Q L + + +F N +MR + + S LQ N G+DD
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDD 167
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 574 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRF 627
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens
GN=RAD21 PE=1 SV=2
Length = 631
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 21/171 (12%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + + + NL E I++P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPEIKETDVED 112
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE + D
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE----EFHD 116
Query: 113 LEQFL-NYPNATATMEFQQNAY----FSMRLDDVDDSFLQSN----VGVDD 154
+Q L + + +F N +MR + + S LQ N G+DD
Sbjct: 117 FDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDD 167
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
GA + SL L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 575 GAESI-SLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRF 628
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo
sapiens GN=RAD21L1 PE=2 SV=3
Length = 556
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + + + NL E+IL+P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A A+TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPE 112
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 492 VDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQN 551
++++ +S +M M+S SL L +RK AA FY VL +++ Q+
Sbjct: 490 LNRLRESNKMGMQSF----------SLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQS 539
Query: 552 KPYGDILISRG 562
PY DI+ + G
Sbjct: 540 APYADIIATMG 550
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis
GN=rad21 PE=1 SV=1
Length = 629
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H +L+++ L +IW+AA K+ + + + NL E I+ P V MALR SG L+
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60
Query: 61 GGVVIVYEKK-----IEINAAW-KTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + N A+ K K+A P + LP+ +A A+TLPE
Sbjct: 61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPE 112
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 511 GAPKVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
GA + SL +L NRK AA FY VL +++ Q +PY DI+ + G R
Sbjct: 573 GAESI-SLLDLCRNTNRKQAAAKFYSFLVLKKQQAIELTQREPYSDIVATPGPRF 626
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1
OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1
Length = 554
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + + + NL E+IL+ V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A A+TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPE 112
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY VL +++ Q+ PY DI+ + G
Sbjct: 503 SLMKLCRNSDRKQAAAKFYSFLVLKKQQAIELSQSDPYADIIATVG 548
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus
musculus GN=Rad21l1 PE=1 SV=2
Length = 552
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAVPMALRLSGILM 60
MFY+H L++++ L +IW+AA K+ + + + NL ++I++P V +ALR SG L+
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60
Query: 61 GGVVIVYEKKIEI------NAAWKTKVARDPTL--LPKGKSQAKREAVTLPE 104
GVV +Y +K + A K K+ P L LPK +A +TLPE
Sbjct: 61 LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPE 112
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRG 562
SL L +RK AA FY +L +++ Q+ PY DI+ + G
Sbjct: 501 SLKKLCRNSDRKQAAAKFYTLLILKKHRAIELSQSVPYADIIATVG 546
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
GN=SYN2 PE=2 SV=2
Length = 810
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 49/205 (23%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNPAV-PMALRLSGIL 59
MFYSH L++RK LG IW+AA K+ + ++ ++ ++IL + + R+ L
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 60 MGGVVIVYEKKIEINAAWKTKVARDPTLLPKGKSQAKREAVTLPEIKETDVEDLEQF-LN 118
+ GVV +Y KK++ K + ++ V+LP +E F +
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLP-------ASIECFSIA 113
Query: 119 YPNATATMEFQQNAYFSMRLDDVDDSFLQSNVGVDDSLQNLHQANV---DDITL------ 169
P F+ +A+ ++GV L++ H NV +DITL
Sbjct: 114 LPE-----RFELDAF---------------DLGV---LEDFHGGNVKPHEDITLKDGSQE 150
Query: 170 TERFDTYQANADTYDRFERFDIEED 194
TER D Y ERFD+EED
Sbjct: 151 TERMDMYS--------MERFDMEED 167
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
SL L G +K +A LFY+T VL T ++V+QN PY D+ + R R
Sbjct: 758 SLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVSR 805
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad21 PE=1 SV=1
Length = 628
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MFYSHQLLARKASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILNP-AVPMALRLSGIL 59
MFYS +L++K L ++W+AA K+++ + ++ + I+ PMALRLSG L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 60 MGGVVIVYEKK 70
M GVV +Y +K
Sbjct: 61 MLGVVRIYSRK 71
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 517 SLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKR 564
S L+AG NR+ A LF+ VLAT DV+ V+Q+ + + KR
Sbjct: 574 SFQTLSAGCNREEAVQLFFDVLVLATKDVISVKQDVAIQNEITLTAKR 621
>sp|P36626|REC8_SCHPO Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec8 PE=1 SV=2
Length = 561
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 1 MFYSHQLLAR-KASLGQIWMAATMHAKMNRKKLNKLNLIKI-----CEEILNPAVPMALR 54
MFY+ +L + K +G IW+AAT+ +K + +KL+K +++ + C+ + P+ALR
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALR 60
Query: 55 LSGILMGGVVIVY 67
LS LM GV V+
Sbjct: 61 LSSNLMIGVTRVW 73
>sp|Q6AYJ4|REC8_RAT Meiotic recombination protein REC8 homolog OS=Rattus norvegicus
GN=Rec8 PE=1 SV=1
Length = 593
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 1 MFYSHQLLAR-KASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILN----------PAV 49
MFY +L R IW+AAT +++ +++ K+N++K CEEILN P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILNYVLVRVQPPMPGL 60
Query: 50 P---MALRLSGILMGGVVIVY 67
P +L LS L GV+ VY
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVY 81
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 418 SEVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSR--FPDPNFRLSRLSERSSTPDPELLV 475
SE+ R Q+ S LE VAEE SR F P R + + ER P ++
Sbjct: 448 SEIEVLREAQEPSGPLMLSSELSLE-VAEEEKSRTSFIPPEERWAWIEERQPEPPALPML 506
Query: 476 ETAPTPTPVPVTNPP-----PVDKITDSIRMQMKSHFEMPGAPKVESLNNLAAGLNRKAA 530
P VP+ PP + + ++ ++++++ E + V L++ RK A
Sbjct: 507 PELPE---VPMEMPPGPELLSSEAVLRAVALELQANREPDFSSLVPPLSS------RKLA 557
Query: 531 AMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
+ +FY VL+ +L V+Q KPYG +LI G +
Sbjct: 558 SRVFYLLLVLSAQKILLVDQQKPYGRLLIRLGPKF 592
>sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens
GN=REC8 PE=2 SV=1
Length = 547
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 1 MFYSHQLLARK-ASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILN----------PAV 49
MFY +L R IW+AAT +++ +++ ++N++K CEEILN P +
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 P---MALRLSGILMGGVVIVYEKKIE 72
P +L LS L GV+ VY ++ +
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQ 86
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 518 LNNLAAGLN-RKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
++L + L+ R+ AA +FY VL+ +L V+Q KPYG +LI G R
Sbjct: 498 FSSLVSPLSPRRMAARVFYLLLVLSAQQILHVKQEKPYGRLLIQPGPRF 546
>sp|Q8C5S7|REC8_MOUSE Meiotic recombination protein REC8 homolog OS=Mus musculus
GN=Rec8 PE=1 SV=1
Length = 591
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Query: 1 MFYSHQLLAR-KASLGQIWMAATMHAKMNRKKLNKLNLIKICEEILN------------- 46
MFY +L R IW+AAT +++ +++ +N++K CEEILN
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLNVNVVKTCEEILNYVLVRVQPPVAGL 60
Query: 47 PAVPMALRLSGILMGGVVIVY 67
P +L LS L GV+ VY
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVY 81
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 527 RKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGKRM 565
RK A+ +FY VL+T +L VEQ KPYG +LI G +
Sbjct: 552 RKLASRVFYLLLVLSTQKILLVEQQKPYGPLLIRPGPKF 590
>sp|P14787|PRLR_RABIT Prolactin receptor OS=Oryctolagus cuniculus GN=PRLR PE=1 SV=1
Length = 616
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 393 EDIHSGVGSQSIPSSASGHGILSHNSEVNSSRSNQKRPRSSSRHSGSGLEPVAEENPSRF 452
E++ S G Q P +A +L EV+ S Q P S HSG G++P +
Sbjct: 290 EELLSAFGCQDFPPTADCEDLLVEFLEVDDSEDQQLMPAHSKEHSGPGMKPTDLD----- 344
Query: 453 PDPNFRLSRLSERSSTPDPELLVETAPTPTPVPVT 487
PD + S R S P LL E P P T
Sbjct: 345 PDND------SGRGSCDSPSLLSEKCEEPQANPST 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,797,146
Number of Sequences: 539616
Number of extensions: 9843067
Number of successful extensions: 51852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 430
Number of HSP's that attempted gapping in prelim test: 46692
Number of HSP's gapped (non-prelim): 4089
length of query: 565
length of database: 191,569,459
effective HSP length: 123
effective length of query: 442
effective length of database: 125,196,691
effective search space: 55336937422
effective search space used: 55336937422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)