Query 008432
Match_columns 565
No_of_seqs 198 out of 327
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1w_E SCC1, sister chromatid 99.8 2.7E-21 9.4E-26 173.9 5.2 73 490-565 36-116 (121)
2 4a34_A RBSD/FUCU transport pro 7.7 4.9E+02 0.017 23.8 5.0 53 499-563 85-139 (147)
3 1ew4_A CYAY protein; friedreic 7.5 34 0.0012 29.8 -2.7 22 4-25 47-68 (106)
4 3k2z_A LEXA repressor; winged 6.9 2.4E+02 0.0081 25.7 2.6 61 493-558 4-66 (196)
5 2wcv_A L-fucose mutarotase; ri 6.6 2.8E+02 0.0095 25.2 2.8 29 534-563 110-138 (140)
6 2wcu_A FUCU, protein FUCU homo 6.5 2.9E+02 0.01 25.3 2.9 29 534-563 119-147 (149)
7 3t3l_A Frataxin, mitochondrial 6.5 40 0.0014 30.4 -2.8 20 4-23 60-79 (129)
8 3e7n_A D-ribose high-affinity 6.4 2.4E+02 0.0083 25.4 2.3 30 533-563 111-140 (142)
9 1y6x_A Phosphoribosyl-ATP pyro 6.1 2.4E+02 0.0083 24.1 2.0 18 526-543 64-81 (93)
10 1e0f_I Haemadin, factor IIA; c 6.0 2.2E+02 0.0075 22.1 1.5 31 165-195 23-56 (57)
No 1
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57
Probab=99.82 E-value=2.7e-21 Score=173.88 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=61.8
Q ss_pred CCcchhHHHHHHHHHhhhhcCCCCCcchhhhhc--------cCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeecc
Q 008432 490 PPVDKITDSIRMQMKSHFEMPGAPKVESLNNLA--------AGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISR 561 (565)
Q Consensus 490 ~p~~~~t~~v~~~l~~~f~~~g~p~~~sL~~l~--------~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~ 561 (565)
.++.++|+.|+++|+.+|+..+ .+++++|+ .|+|||+|||||||+|||+|+|||+|+|++|||||.|++
T Consensus 36 ~~~Sk~T~~v~~~Lr~~f~~~~---~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ~epyGdI~I~~ 112 (121)
T 1w1w_E 36 EVASKAIVQMAKILRKELSEEK---EVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDA 112 (121)
T ss_dssp ----CHHHHHHHHHHHHTTSCS---CEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEE
T ss_pred CcccHHHHHHHHHHHHHhCCCC---CccHHHHHhhccccccCCCCHHHHHHHHHHHHHHccCCeeEEecCCCCCceEEee
Confidence 4788999999999999999954 58999985 599999999999999999999999999999999999999
Q ss_pred CCCC
Q 008432 562 GKRM 565 (565)
Q Consensus 562 gpk~ 565 (565)
||+|
T Consensus 113 ~p~L 116 (121)
T 1w1w_E 113 KPAL 116 (121)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 9986
No 2
>4a34_A RBSD/FUCU transport protein family protein; isomerase; HET: FUL; 2.50A {Streptococcus pneumoniae} SCOP: c.133.1.0
Probab=7.72 E-value=4.9e+02 Score=23.75 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=35.7
Q ss_pred HHHHHHhhhhcCCCC--CcchhhhhccCCcHHHHHHHHHHHHHhhhcCeEEeeccCCCcceeeccCC
Q 008432 499 IRMQMKSHFEMPGAP--KVESLNNLAAGLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDILISRGK 563 (565)
Q Consensus 499 v~~~l~~~f~~~g~p--~~~sL~~l~~g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gp 563 (565)
|++.++..+.+.|.. ++..+.+ -+ ||+.+- +++-+|.---.-|||+|+++.|-
T Consensus 85 i~~~~~~~l~~~~~~~~~i~~i~h-------~~----Fye~ak-~a~aVVrTGE~~pYaNiIL~~GV 139 (147)
T 4a34_A 85 IWGTYRQMIEGHGTDLKTITYLRR-------ED----FYERSK-KAYAIVATGETSLYANIILKKGV 139 (147)
T ss_dssp HHHHHHHHHTTTTCCGGGEEEECH-------HH----HHHHHH-SSSEEEEECCCSTTCCEEEEBCC
T ss_pred HHHHHHHHHHHhCCCCCceEEeCH-------HH----HHHHHh-cceEEEEcCCCCceeeEEEEecc
Confidence 455566677665532 2333333 22 998754 67778887788999999999985
No 3
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=7.51 E-value=34 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=18.1
Q ss_pred chhhhhcCCChhHHHHHhhcCc
Q 008432 4 SHQLLARKASLGQIWMAATMHA 25 (565)
Q Consensus 4 S~~LLskkgpLa~IWLAAt~~~ 25 (565)
++.|++|..|+-+|||||-.+-
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~sG 68 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSCE
T ss_pred CEEEEeCCchhhhheEecCCCc
Confidence 4567889999999999988753
No 4
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=6.92 E-value=2.4e+02 Score=25.68 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHhhhhcCCCCCcchhhhhcc--CCcHHHHHHHHHHHHHhhhcCeEEeeccCCCccee
Q 008432 493 DKITDSIRMQMKSHFEMPGAPKVESLNNLAA--GLNRKAAAMLFYQTCVLATSDVLKVEQNKPYGDIL 558 (565)
Q Consensus 493 ~~~t~~v~~~l~~~f~~~g~p~~~sL~~l~~--g~tRk~AAr~FY~~lVL~t~~~i~VeQ~~pYgdI~ 558 (565)
..+-..|..++..+++..|.| .|...|+. |.+.. + +.-.+-.|...|||...+..+++-.+
T Consensus 4 t~~q~~il~~I~~~~~~~g~~--~s~~eia~~lgl~~~--t-v~~~l~~Le~~G~i~~~~~~~r~i~~ 66 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYP--PSVREIARRFRITPR--G-ALLHLIALEKKGYIERKNGKPRALRI 66 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHTSCHH--H-HHHHHHHHHHTTSEECC---TTCCEE
T ss_pred CHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHcCCCcH--H-HHHHHHHHHHCCCEEecCCCcceEEe
Confidence 456778889999999888854 34455533 55544 3 45556689999999998887775443
No 5
>2wcv_A L-fucose mutarotase; ribose, pyranase, isomerase, fucose metabolism; HET: FUC; 1.90A {Escherichia coli}
Probab=6.55 E-value=2.8e+02 Score=25.16 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=23.8
Q ss_pred HHHHHHhhhcCeEEeeccCCCcceeeccCC
Q 008432 534 FYQTCVLATSDVLKVEQNKPYGDILISRGK 563 (565)
Q Consensus 534 FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gp 563 (565)
||+. .=+++-+|.---..|||+|+++.|-
T Consensus 110 Fy~~-ak~a~aVVrTGE~~pYaNiIL~~GV 138 (140)
T 2wcv_A 110 FYER-AQKAFAIVITGERAKYGNILLKKGV 138 (140)
T ss_dssp HHHH-HTTSSEEEEECCCSTTCCEEEEBCC
T ss_pred HHHH-HhCCeEEEECCCCCcccEEEEecCc
Confidence 9987 4456777887788999999999984
No 6
>2wcu_A FUCU, protein FUCU homolog; fucose, ribose, pyranase, mutarotase, alternative splicing, isomerase; HET: FUC; 1.90A {Mus musculus}
Probab=6.52 E-value=2.9e+02 Score=25.30 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=23.8
Q ss_pred HHHHHHhhhcCeEEeeccCCCcceeeccCC
Q 008432 534 FYQTCVLATSDVLKVEQNKPYGDILISRGK 563 (565)
Q Consensus 534 FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gp 563 (565)
||+.+ =+++-+|.---..|||+|+++.|-
T Consensus 119 Fy~~a-k~a~aVVrTGE~~pYaNiIL~~GV 147 (149)
T 2wcu_A 119 FYERA-KKAFAVVATGEMALYGNIILKKGT 147 (149)
T ss_dssp HHHHH-HTSSEEEEECCCSTTCCEEEEBCC
T ss_pred HHHHH-hCCeEEEECCCCCcccEEEEEcCC
Confidence 99874 456777877788999999999984
No 7
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=6.48 E-value=40 Score=30.42 Aligned_cols=20 Identities=10% Similarity=0.426 Sum_probs=17.4
Q ss_pred chhhhhcCCChhHHHHHhhc
Q 008432 4 SHQLLARKASLGQIWMAATM 23 (565)
Q Consensus 4 S~~LLskkgpLa~IWLAAt~ 23 (565)
++.|++|+.|+-+|||||-.
T Consensus 60 g~~VINkQ~P~~QIWLASp~ 79 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSPS 79 (129)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhHhheeCCC
Confidence 56688899999999999984
No 8
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=6.38 E-value=2.4e+02 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=23.9
Q ss_pred HHHHHHHhhhcCeEEeeccCCCcceeeccCC
Q 008432 533 LFYQTCVLATSDVLKVEQNKPYGDILISRGK 563 (565)
Q Consensus 533 ~FY~~lVL~t~~~i~VeQ~~pYgdI~I~~gp 563 (565)
-||+. .=+++-+|.---.-|||+|+++.|-
T Consensus 111 ~Fy~~-a~~a~aVVrTGE~~pYaNiIL~kGV 140 (142)
T 3e7n_A 111 QFKKL-TADSQAVIRSGECSPYANVILCAGV 140 (142)
T ss_dssp HHHHH-HTTSSEEEECCCCSTTCCEEEEECC
T ss_pred HHHHH-HhcceEEEECCCCCceeEEEEEcCc
Confidence 49986 4566677777778899999999884
No 9
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=6.11 E-value=2.4e+02 Score=24.13 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHhhhc
Q 008432 526 NRKAAAMLFYQTCVLATS 543 (565)
Q Consensus 526 tRk~AAr~FY~~lVL~t~ 543 (565)
..-|||-++|.++||...
T Consensus 64 l~~E~ADLlYHllVlL~~ 81 (93)
T 1y6x_A 64 LAEEISQLLYWTQVLMIS 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356899999999998653
No 10
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=6.01 E-value=2.2e+02 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=20.3
Q ss_pred CCcccccc---ccccccCccccCcccccCCcccc
Q 008432 165 DDITLTER---FDTYQANADTYDRFERFDIEEDT 195 (565)
Q Consensus 165 e~ITL~e~---~~~~~~~~d~~~r~erf~i~ed~ 195 (565)
|.|-|-.. -+.-..++.++.-||.|+|.|+|
T Consensus 23 ekiclygqscndgqcsgdpkpssefeefeideee 56 (57)
T 1e0f_I 23 EKICLYGQSCNDGQCSGDPKPSSEFEEFEIDEEE 56 (57)
T ss_dssp SSEECTTCCBSSSCBCSCCCCCCCSCCCCCCCCC
T ss_pred ceeeEecccccCCcccCCCCcccccceeeccccc
Confidence 55655332 12234577778999999999863
Done!