BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008433
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/559 (59%), Positives = 426/559 (76%), Gaps = 4/559 (0%)
Query: 2 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHAC 61
I YL+A MF DYS+P + ++ +EL+L+ VVPC SGPKRP D+V +++MK D+ +C
Sbjct: 352 IRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESC 411
Query: 62 LDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALV 121
L + GFKGF + ++ + F ++ + L HG VVIAAITS TNTSNPSVMLGA L+
Sbjct: 412 LGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLL 471
Query: 122 AKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 181
AKKA + GL VKP++KTSL+PGSGVVT YL+ SG+ YL+ LGF +VGYG TCIGNSG
Sbjct: 472 AKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGSMTCIGNSGP 531
Query: 182 IDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 241
+ + V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+AG++ IDFE
Sbjct: 532 LPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEK 591
Query: 242 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGT 301
EP+G G+++FLRDIWP+ EE+ V ++ V+P MF Y+ I N WN L+ PS
Sbjct: 592 EPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASWNALAAPSDK 651
Query: 302 LYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPA 361
LY W+PKSTYI PP+F+++T+ P + AY LLN GDS+TTDHISPAG+I ++SPA
Sbjct: 652 LYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPA 711
Query: 362 AKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLS 421
A+YL RG+ R+FNSYGSRRGND IMARGTFANIRL+N+ LN + P+TIH+P+GE L
Sbjct: 712 ARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQ-APQTIHLPSGETLD 770
Query: 422 VFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 481
VFDAA RY+ EGH ++LAG EYGSGSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGM
Sbjct: 771 VFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGM 830
Query: 482 GIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTE 541
G+IPL + PGE+A++ GLTG ERYTI +P +++ P V+V D+GK+F VIRFDT+
Sbjct: 831 GVIPLEYLPGENADSLGLTGRERYTIIIPENLT---PRMHVQVKLDTGKTFQAVIRFDTD 887
Query: 542 VELAYFDHGGILQYVIRNL 560
VEL YF +GGIL Y+IR +
Sbjct: 888 VELTYFHNGGILNYMIRKM 906
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/559 (58%), Positives = 425/559 (76%), Gaps = 4/559 (0%)
Query: 2 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHAC 61
I+ YL+A MF D+++P + ++ +EL+L+ VVPC SGPKRP D+V +++MK D+ +C
Sbjct: 332 IKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESC 391
Query: 62 LDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALV 121
L + GFKGF + E+ + F + T L HG VVIAAITSCTNTSNPSVMLGA L+
Sbjct: 392 LGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLL 451
Query: 122 AKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 181
AKKA + GL V P+IKTSL+PGSGVVT YLQ SG+ YL+ LGF +VGYGC TCIGNSG
Sbjct: 452 AKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGP 511
Query: 182 IDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 241
+ + V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+AG++ IDFE
Sbjct: 512 LPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEK 571
Query: 242 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGT 301
EP+GV G+++FL+DIWP+ +E+ V ++ V+P MFK Y+ I N WN L+ PS
Sbjct: 572 EPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDK 631
Query: 302 LYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPA 361
L+ W+ KSTYI PP+F+++T+ P + AY LLN GDS+TTDHISPAG+I ++SPA
Sbjct: 632 LFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPA 691
Query: 362 AKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLS 421
A+YL RG+ R+FNSYGSRRGND +MARGTFANIRL+N+ LN + P+TIH+P+GE L
Sbjct: 692 ARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQ-APQTIHLPSGEILD 750
Query: 422 VFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 481
VFDAA RY+ G ++LAG EYG+GSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGM
Sbjct: 751 VFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGM 810
Query: 482 GIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTE 541
G+IPL + PGE+A+ GLTG ERYTI +P + ++P V+V D+GK+F V+RFDT+
Sbjct: 811 GVIPLEYLPGENADALGLTGQERYTIIIPEN---LKPQMKVQVKLDTGKTFQAVMRFDTD 867
Query: 542 VELAYFDHGGILQYVIRNL 560
VEL YF +GGIL Y+IR +
Sbjct: 868 VELTYFLNGGILNYMIRKM 886
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 215/533 (40%), Gaps = 118/533 (22%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P S Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 295 FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 339
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 340 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 382
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 383 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 440
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 441 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 489
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 490 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 533
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 534 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 578
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 579 -------FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPD 618
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++
Sbjct: 619 TARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLL 678
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 537
PL F + A+ + + ++ TI + + P GK TC+I+
Sbjct: 679 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 215/533 (40%), Gaps = 118/533 (22%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P S Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 295 FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 339
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 340 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 382
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 383 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 440
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 441 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 489
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 490 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 533
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 534 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 578
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 579 -------FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPD 618
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++
Sbjct: 619 TARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLL 678
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 537
PL F + A+ + + ++ TI + + P GK TC+I+
Sbjct: 679 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 214/533 (40%), Gaps = 118/533 (22%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P S Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 295 FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 339
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 340 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 382
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 383 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 440
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 441 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 489
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 490 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 533
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 534 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 578
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 579 -------FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPD 618
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG GSSR+ A P LG +A+I KSF RIH +NL G++
Sbjct: 619 TARYYKQHGIRWVVIGDENYGEGSSREHRALEPRFLGGRAIITKSFARIHETNLKKQGLL 678
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 537
PL F + A+ + + ++ TI + + P GK TC+I+
Sbjct: 679 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 147/552 (26%), Positives = 225/552 (40%), Gaps = 111/552 (20%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 294 FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 338
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 339 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 381
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 382 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 439
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 440 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 488
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG A P
Sbjct: 489 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVAVSP 532
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 533 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 577
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 578 -------FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPD 617
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++
Sbjct: 618 TARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 677
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TE 541
PL F + A+ + + ++ TI + + PG+ ++ + +G T ++ E
Sbjct: 678 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNE 732
Query: 542 VELAYFDHGGIL 553
++ +F G L
Sbjct: 733 TQIEWFRAGSAL 744
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 147/552 (26%), Positives = 224/552 (40%), Gaps = 111/552 (20%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 295 FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 339
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 340 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 382
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 383 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 440
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 441 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 489
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 490 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 533
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 534 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 578
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 579 -------FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPD 618
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++
Sbjct: 619 TARYYKQHGIRWVVIGDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 678
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TE 541
PL F + A+ + + ++ TI + + PG+ ++ + +G T ++ E
Sbjct: 679 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNE 733
Query: 542 VELAYFDHGGIL 553
++ +F G L
Sbjct: 734 TQIEWFRAGSAL 745
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 146/552 (26%), Positives = 224/552 (40%), Gaps = 111/552 (20%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 295 FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 339
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 340 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 382
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 383 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 440
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 441 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 489
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 490 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 533
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 534 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 578
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 579 -------FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPD 618
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++
Sbjct: 619 TARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 678
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TE 541
PL F + A+ + + ++ TI + + PG+ ++ + +G T ++ E
Sbjct: 679 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNE 733
Query: 542 VELAYFDHGGIL 553
++ +F G L
Sbjct: 734 TQIEWFRAGSAL 745
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 146/552 (26%), Positives = 224/552 (40%), Gaps = 111/552 (20%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 294 FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 338
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 339 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 381
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 382 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 439
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 440 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 488
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 489 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 532
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 533 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 577
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 578 -------FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPD 617
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++
Sbjct: 618 TARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 677
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TE 541
PL F + A+ + + ++ TI + + PG+ ++ + +G T ++ E
Sbjct: 678 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNE 732
Query: 542 VELAYFDHGGIL 553
++ +F G L
Sbjct: 733 TQIEWFRAGSAL 744
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 146/552 (26%), Positives = 224/552 (40%), Gaps = 111/552 (20%)
Query: 12 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71
F D+ P Y +E+NL E+ P ++GP P P+ E+ G
Sbjct: 294 FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GS 338
Query: 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE 131
KE G P +R + I SCTN+S + AA VAK+A GL+
Sbjct: 339 VAEKE-----------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLK 381
Query: 132 VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAA 189
K + ++ PGS + ++ G + L +G ++ C CIG + DI
Sbjct: 382 CKS--QFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNT 439
Query: 190 ITENDIVAAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 247
I V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + G
Sbjct: 440 I---------VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TG 488
Query: 248 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 307
KDGKK L P ++E+ D + TY+ K + SG P
Sbjct: 489 KDGKKFKLEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSP 532
Query: 308 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLME 367
S + F ++ L+ TTDHIS AG K
Sbjct: 533 TSQRLQLLEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK---------- 577
Query: 368 RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFD 424
F + N+ ++ N R N + N E GP V D
Sbjct: 578 -------FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPD 617
Query: 425 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
A YK G V++ YG GSS++ +A P LG +A+I KSF RIH +NL G++
Sbjct: 618 TARYYKQHGIRWVVIGDENYGEGSSQEHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 677
Query: 485 PLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TE 541
PL F + A+ + + ++ TI + + PG+ ++ + +G T ++ E
Sbjct: 678 PLTF--ADPADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNE 732
Query: 542 VELAYFDHGGIL 553
++ +F G L
Sbjct: 733 TQIEWFRAGSAL 744
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 437 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496
VI+AG +G GSSR+ A G+KAVIAKSF RI N + +G+IP+ A T
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPII------ANT 107
Query: 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 556
+ + IDL EI V+T+ K+ C E E+ GG++ Y+
Sbjct: 108 DEIKDGDIVEIDLDK--EEI-------VITNKNKTIKCETPKGLEREI--LAAGGLVNYL 156
Query: 557 -IRNLINVRQ 565
R LI ++
Sbjct: 157 KKRKLIQSKK 166
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 437 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496
V++AG +G GSSR+ AA LG+ VIA+SF RI N + +G IPL +T
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLL-----GKT 107
Query: 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 556
GL + T++ + E+R G ++ + ++R GGIL+Y+
Sbjct: 108 EGLKDGDLVTVNWET--GEVRKGDEILMFEPLEDFLLEIVR-----------EGGILEYI 154
Query: 557 IR 558
R
Sbjct: 155 RR 156
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 436 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 492
++++ G +G+GSSR+ AA G K ++A SF IH +N + GI+P+ +P E
Sbjct: 87 SILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPII-QPKE 142
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 430 KNEGHDTVILAGAE-YGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 488
K E ++ IL E +GSGSSR+ A + G++A+IA SF I ++N +G G++ +
Sbjct: 67 KKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIEL 126
Query: 489 KPGE 492
E
Sbjct: 127 AKDE 130
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 437 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 483
+I+ G +G GSSR+ A G G+ VIA+SF RI N + +G+
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGL 102
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 436 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 436 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 436 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 484
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
Length = 242
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR 210
L HLG+ G T C G+ +DD + E A+V+ N+ F GR
Sbjct: 139 LGHLGY---GVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGR 186
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 501 GHERYTIDLPSSVSEIRPGQDVRVVTDS--GKSFTCV---IRFDTEVELAY-FDHGGILQ 554
GHERY + + +PG V + S G++ + +RF + E+AY HGGI+
Sbjct: 132 GHERYGKTYEGVLKDWKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIIS 191
Query: 555 YVIR 558
+ +
Sbjct: 192 ELFK 195
>pdb|4I1D|A Chain A, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|B Chain B, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|C Chain C, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|D Chain D, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
Length = 324
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 260 PSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSG 300
PS++++ + + +PD + A + G P+W+ + P+G
Sbjct: 25 PSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTG 65
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 134 PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG-NSGDIDD 184
P+ ++ SG + +GL +YL+ GFH+ Y +G +SG ID+
Sbjct: 32 PFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDE 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,410,038
Number of Sequences: 62578
Number of extensions: 833278
Number of successful extensions: 1668
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1603
Number of HSP's gapped (non-prelim): 50
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)