Query 008433
Match_columns 565
No_of_seqs 377 out of 2209
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 12:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 4E-168 8E-173 1320.2 32.0 557 2-561 336-892 (892)
2 PLN00070 aconitate hydratase 100.0 2E-162 4E-167 1365.7 50.9 563 1-563 374-936 (936)
3 PTZ00092 aconitate hydratase-l 100.0 2E-159 4E-164 1339.7 49.4 556 1-562 342-897 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 2E-157 4E-162 1321.2 49.6 549 2-561 323-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 4E-157 9E-162 1322.0 49.4 547 1-562 339-889 (889)
6 PRK09277 aconitate hydratase; 100.0 6E-157 1E-161 1318.1 49.4 544 2-562 340-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 2E-151 4E-156 1268.2 46.8 524 1-562 326-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 4E-151 9E-156 1250.7 43.4 531 1-562 327-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 4E-110 9E-115 936.5 37.6 458 2-556 266-745 (745)
10 PRK07229 aconitate hydratase; 100.0 1E-100 3E-105 855.4 37.2 412 2-561 230-645 (646)
11 TIGR01342 acon_putative aconit 100.0 1E-99 2E-104 846.5 36.6 420 2-561 227-653 (658)
12 PRK11413 putative hydratase; P 100.0 3.8E-93 8.2E-98 796.5 32.6 454 2-558 260-750 (751)
13 TIGR00139 h_aconitase homoacon 100.0 3E-86 6.4E-91 737.7 34.1 413 17-560 278-712 (712)
14 KOG0453 Aconitase/homoaconitas 100.0 1.6E-85 3.4E-90 699.2 29.9 461 2-558 299-774 (778)
15 cd01580 AcnA_IRP_Swivel Aconit 100.0 2.4E-67 5.1E-72 489.8 13.0 170 339-508 1-170 (171)
16 PRK12466 isopropylmalate isome 100.0 5.3E-54 1.2E-58 463.7 18.4 211 2-245 241-466 (471)
17 PRK05478 isopropylmalate isome 100.0 1.5E-53 3.2E-58 460.2 18.7 209 4-245 254-464 (466)
18 TIGR00170 leuC 3-isopropylmala 100.0 2.4E-53 5.3E-58 457.9 18.2 198 11-236 261-460 (465)
19 cd01583 IPMI 3-isopropylmalate 100.0 1.7E-52 3.7E-57 441.8 19.5 178 2-235 203-382 (382)
20 cd01585 AcnA_Bact Aconitase ca 100.0 1.6E-52 3.5E-57 440.8 19.1 178 2-235 201-380 (380)
21 cd01586 AcnA_IRP Aconitase A c 100.0 5.8E-52 1.3E-56 436.3 18.7 168 25-235 237-404 (404)
22 TIGR01343 hacA_fam homoaconita 100.0 6E-52 1.3E-56 440.4 18.8 178 2-236 229-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 1.3E-51 2.9E-56 438.5 18.3 179 2-236 232-412 (418)
24 TIGR02086 IPMI_arch 3-isopropy 100.0 2E-51 4.4E-56 436.4 18.8 180 2-236 228-408 (412)
25 PF00330 Aconitase: Aconitase 100.0 5.9E-52 1.3E-56 449.0 14.1 210 2-233 240-465 (465)
26 cd01584 AcnA_Mitochondrial Aco 100.0 8.2E-51 1.8E-55 431.8 18.9 193 2-235 209-412 (412)
27 TIGR02083 LEU2 3-isopropylmala 100.0 1.2E-50 2.5E-55 430.4 19.3 180 2-236 232-414 (419)
28 COG0065 LeuC 3-isopropylmalate 100.0 3.6E-50 7.9E-55 415.5 17.4 181 2-236 233-417 (423)
29 cd01581 AcnB Aconitate hydrata 100.0 2E-47 4.3E-52 407.5 16.4 160 17-235 276-436 (436)
30 cd01582 Homoaconitase Homoacon 100.0 6.1E-47 1.3E-51 395.7 16.3 164 25-235 199-363 (363)
31 cd01351 Aconitase Aconitase ca 100.0 1.1E-45 2.4E-50 392.9 17.9 179 2-235 202-389 (389)
32 PRK09238 bifunctional aconitat 100.0 1.4E-44 3E-49 406.0 15.6 162 17-236 648-810 (835)
33 PLN00094 aconitate hydratase 2 100.0 5.3E-44 1.1E-48 399.3 16.4 162 17-236 722-884 (938)
34 TIGR00117 acnB aconitate hydra 100.0 6.6E-44 1.4E-48 399.4 16.2 161 17-236 649-810 (844)
35 KOG0454 3-isopropylmalate dehy 100.0 3.2E-43 7E-48 364.4 17.7 380 5-490 14-402 (502)
36 cd01578 AcnA_Mitochon_Swivel M 100.0 1.3E-42 2.9E-47 319.7 10.0 141 339-508 1-141 (149)
37 PRK00439 leuD 3-isopropylmalat 100.0 4.5E-39 9.9E-44 304.7 12.7 156 337-560 4-159 (163)
38 TIGR02084 leud 3-isopropylmala 100.0 9.5E-39 2.1E-43 299.7 11.1 154 337-558 3-156 (156)
39 PRK14023 homoaconitate hydrata 100.0 1.9E-38 4.1E-43 300.8 12.2 155 337-560 4-158 (166)
40 TIGR02087 LEUD_arch 3-isopropy 100.0 3.4E-38 7.4E-43 295.6 11.3 152 337-559 3-154 (154)
41 PLN00072 3-isopropylmalate iso 100.0 1E-36 2.2E-41 302.0 13.4 168 329-559 67-240 (246)
42 COG0066 LeuD 3-isopropylmalate 100.0 2.3E-36 4.9E-41 287.2 10.9 166 336-561 10-180 (191)
43 PF00694 Aconitase_C: Aconitas 100.0 8.1E-36 1.8E-40 271.9 3.4 128 363-490 3-130 (131)
44 cd01579 AcnA_Bact_Swivel Bacte 100.0 9.6E-35 2.1E-39 262.2 7.2 120 339-508 1-120 (121)
45 TIGR00171 leuD 3-isopropylmala 100.0 1.7E-32 3.7E-37 264.3 10.2 163 333-550 8-174 (188)
46 PRK01641 leuD isopropylmalate 100.0 2.1E-32 4.5E-37 266.3 9.6 161 333-550 8-172 (200)
47 cd00404 Aconitase_swivel Aconi 100.0 1.7E-30 3.7E-35 221.2 6.8 71 436-508 17-87 (88)
48 cd01577 IPMI_Swivel Aconatase- 100.0 3E-30 6.6E-35 221.1 5.9 72 436-508 19-90 (91)
49 PRK09238 bifunctional aconitat 100.0 1.3E-28 2.7E-33 277.6 14.5 173 323-562 158-343 (835)
50 cd01674 Homoaconitase_Swivel H 100.0 4.2E-29 9.2E-34 224.5 5.1 100 340-490 2-101 (129)
51 COG1049 AcnB Aconitase B [Ener 99.9 1E-25 2.3E-30 241.5 13.1 161 17-235 650-811 (852)
52 TIGR00117 acnB aconitate hydra 99.9 1.5E-24 3.2E-29 244.2 12.5 167 326-561 162-343 (844)
53 cd01576 AcnB_Swivel Aconitase 99.9 6.3E-25 1.4E-29 199.8 6.9 54 436-489 52-117 (131)
54 PLN00094 aconitate hydratase 2 99.8 4.9E-20 1.1E-24 207.7 12.9 119 424-561 283-415 (938)
55 PRK14812 hypothetical protein; 99.8 1.1E-19 2.3E-24 163.5 7.6 90 446-550 2-92 (119)
56 PF06434 Aconitase_2_N: Aconit 98.8 2.5E-08 5.4E-13 96.0 9.2 162 336-562 2-176 (204)
57 KOG0454 3-isopropylmalate dehy 98.1 1.4E-06 3E-11 92.6 3.7 161 21-234 330-498 (502)
58 COG1049 AcnB Aconitase B [Ener 97.1 0.0018 4E-08 71.9 8.9 118 424-559 212-342 (852)
59 PF04412 DUF521: Protein of un 95.9 0.025 5.4E-07 61.5 8.5 71 94-172 286-356 (400)
60 COG1679 Predicted aconitase [G 93.5 0.24 5.1E-06 53.1 7.7 72 93-172 285-356 (403)
61 cd01355 AcnX Putative Aconitas 90.9 0.61 1.3E-05 50.7 7.2 69 97-176 278-346 (389)
62 COG1445 FrwB Phosphotransferas 52.1 17 0.00037 33.4 3.6 33 100-133 4-36 (122)
63 TIGR00829 FRU PTS system, fruc 48.4 16 0.00034 31.3 2.6 31 102-133 2-32 (85)
64 PRK10427 putative PTS system f 35.9 41 0.0009 30.4 3.4 33 100-133 5-37 (114)
65 COG0311 PDX2 Predicted glutami 35.6 46 0.001 32.9 3.9 75 134-211 37-113 (194)
66 COG0054 RibH Riboflavin syntha 24.7 1.1E+02 0.0023 29.3 4.3 68 98-169 13-84 (152)
67 PRK03600 nrdI ribonucleotide r 23.1 76 0.0017 29.4 2.9 28 180-207 56-86 (134)
68 TIGR01918 various_sel_PB selen 21.4 1.3E+02 0.0027 33.5 4.6 93 102-202 274-372 (431)
69 PF00694 Aconitase_C: Aconitas 20.7 57 0.0012 30.4 1.6 20 333-352 8-27 (131)
70 PF13380 CoA_binding_2: CoA bi 20.5 92 0.002 27.9 2.9 39 123-173 73-111 (116)
71 PF07972 Flavodoxin_NdrI: NrdI 20.4 1E+02 0.0022 28.3 3.1 26 182-207 57-85 (122)
72 TIGR01917 gly_red_sel_B glycin 20.0 1.3E+02 0.0029 33.3 4.4 54 124-177 294-351 (431)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-168 Score=1320.20 Aligned_cols=557 Identities=72% Similarity=1.201 Sum_probs=547.9
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccccc
Q 008433 2 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKV 81 (565)
Q Consensus 2 v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (565)
+++|||+.++|++|..++.++.|++++++||++|+|+|+||+||+|++++++|+++|..||.++++++||.++++.|...
T Consensus 336 i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~ 415 (892)
T KOG0452|consen 336 IEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKS 415 (892)
T ss_pred HHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhce
Confidence 78999999999999878889999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHH
Q 008433 82 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 161 (565)
Q Consensus 82 ~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~ 161 (565)
..+.|+|.+.+|+||+|+||+|+||||+|||++|++|+||||||+++|++|+||+|||++|||.+|+.||.++|++++|+
T Consensus 416 v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~ 495 (892)
T KOG0452|consen 416 VEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLE 495 (892)
T ss_pred EEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCCC
Q 008433 162 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 241 (565)
Q Consensus 162 ~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~t 241 (565)
++||.|+||||++||||+|++.+++.++|++|++++++|+|+|||||||+||.+++||||||+||+||||||++++||+|
T Consensus 496 klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~ 575 (892)
T KOG0452|consen 496 KLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFET 575 (892)
T ss_pred hcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCCC
Q 008433 242 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 321 (565)
Q Consensus 242 ~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~~ 321 (565)
+|+|++++|+.|||+||||+++||++++++++.|+||++.|+.|..|++.||.|..|++.+|+||++||||++||||++|
T Consensus 576 eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~m 655 (892)
T KOG0452|consen 576 EPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGM 655 (892)
T ss_pred cccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhcc
Q 008433 322 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 401 (565)
Q Consensus 322 ~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~ 401 (565)
+..++.+++|++++||+.+||+||||||||||+|.++||||+||..||++|+|||||||||||+++|+||||+|||+.|+
T Consensus 656 T~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNk 735 (892)
T KOG0452|consen 656 TRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNK 735 (892)
T ss_pred ccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccC
Q 008433 402 LLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 481 (565)
Q Consensus 402 ~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~ 481 (565)
++. ++||.|+|+|+||.++|||+|++|+++|.+.||+||+.||+|||||||||+|.+||||||||+||+||||+||++|
T Consensus 736 l~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViaeS~ErIHrsnLvGm 814 (892)
T KOG0452|consen 736 LLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESYERIHRSNLVGM 814 (892)
T ss_pred Hhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHHHHHHHHhhccccc
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHhh
Q 008433 482 GIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 561 (565)
Q Consensus 482 GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~~ 561 (565)
||+||+|..++++|+|++.|.|.++|.+|+. .++||+.|+|.+.+|+.|.+++++||+.|+.|+++||||||+.|++.
T Consensus 815 GIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 815 GIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred eeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEecCCcHHHHHhhcC
Confidence 9999999999999999999999999999873 39999999998888999999999999999999999999999999863
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=1.9e-162 Score=1365.66 Aligned_cols=563 Identities=89% Similarity=1.429 Sum_probs=534.2
Q ss_pred CHHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 1 MIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 1 ~v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
++++|+|+|++|+++..+|++|.|++++|||||+|+|+||||++|||++||++++++|.+++..+.+.+|+..+.+++..
T Consensus 374 ~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (936)
T PLN00070 374 MIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSK 453 (936)
T ss_pred HHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccccccccccchhhhhh
Confidence 47899999999997556889999999999999999999999999999999999999999888765444444332222222
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
..+++|+|++.++++|+|+||+|||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|
T Consensus 454 ~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~~Gl~~~L 533 (936)
T PLN00070 454 VAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYL 533 (936)
T ss_pred hhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCC
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 240 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 240 (565)
+++||+|++|||||||||++++.++++++|.+|+++++||+|+||||+|||||..+++|||||+|||||||+|+|++|++
T Consensus 534 ~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~ 613 (936)
T PLN00070 534 NQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFE 613 (936)
T ss_pred HHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCC
Q 008433 241 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKD 320 (565)
Q Consensus 241 t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~ 320 (565)
|||+++++||++|||+||||+.+||++++.+.++|++|+..|++++.|++.|+.++.|++..|+||++||||++||||++
T Consensus 614 ~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~~pp~f~~ 693 (936)
T PLN00070 614 KEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKN 693 (936)
T ss_pred CCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceeecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhc
Q 008433 321 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 400 (565)
Q Consensus 321 ~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n 400 (565)
++..++.+++|+++|||+++||+||||||||||+|+++||||+||++|||.++|||||||||||||||+||||+|+|++|
T Consensus 694 ~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFaNir~~N 773 (936)
T PLN00070 694 MTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVN 773 (936)
T ss_pred cCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhceeccchhhhh
Confidence 99888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhcc
Q 008433 401 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 480 (565)
Q Consensus 401 ~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin 480 (565)
+|++|++|++|+|+|+|+.++|||+|++|+++|.|+|||||+|||||||||||||++++|||+||||+||+||||+||+|
T Consensus 774 ~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~ 853 (936)
T PLN00070 774 KLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 853 (936)
T ss_pred hhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHh
Q 008433 481 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 481 ~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~ 560 (565)
||||||+|.++++|+++++.+++.++|+++.....++||++++++..+|++|.+.+++||+.|++||++||+||||++++
T Consensus 854 ~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~~ 933 (936)
T PLN00070 854 MGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNL 933 (936)
T ss_pred cCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999998889899998776667899998887667889999999999999999999999999999998
Q ss_pred hhh
Q 008433 561 INV 563 (565)
Q Consensus 561 ~~~ 563 (565)
+++
T Consensus 934 ~~~ 936 (936)
T PLN00070 934 IKQ 936 (936)
T ss_pred hhC
Confidence 753
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.9e-159 Score=1339.73 Aligned_cols=556 Identities=68% Similarity=1.136 Sum_probs=519.6
Q ss_pred CHHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 1 MIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 1 ~v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
||++|.++|++|++ +|++|.|+++|+||||+|+|+||||++|||++||++++++|.+++....+.+++++.+.+...
T Consensus 342 lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (898)
T PTZ00092 342 LIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEK 418 (898)
T ss_pred HHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCcccccc
Confidence 35777777777764 688999999999999999999999999999999999999998877654333344332211111
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
..++.+.|.+..+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|
T Consensus 419 ~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l 498 (898)
T PTZ00092 419 KVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKYL 498 (898)
T ss_pred ccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCcHHHH
Confidence 22334567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCC
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 240 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 240 (565)
+++||+|++|||||||||++++.++++++|.+|+++++||+|+||||+|||||..+++|||||+|||||||+|+|++|++
T Consensus 499 ~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 578 (898)
T PTZ00092 499 EKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFE 578 (898)
T ss_pred HHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCC
Q 008433 241 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKD 320 (565)
Q Consensus 241 t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~ 320 (565)
+||++.+++|++|||+||||+.+||++++...++|++|...|..++++++.|+.++.|+++.|+||++||||++||||++
T Consensus 579 ~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~ 658 (898)
T PTZ00092 579 TEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPPFFQT 658 (898)
T ss_pred cCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhc
Q 008433 321 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 400 (565)
Q Consensus 321 ~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n 400 (565)
++..++...+|.++|||+++||+||||||||||+|+.+||||+||+++||.++|||||||||||||||+||||+|+|+.|
T Consensus 659 ~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF~Niri~N 738 (898)
T PTZ00092 659 MELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFANIRLIN 738 (898)
T ss_pred cccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceeccccceee
Confidence 98777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhcc
Q 008433 401 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 480 (565)
Q Consensus 401 ~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin 480 (565)
+|+ |.+|++|+|+|+|+.++|||+|++|+++|.|+|||||+|||||||||||||++++|||+||||+||+||||+||+|
T Consensus 739 ~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~rIh~~Nli~ 817 (898)
T PTZ00092 739 KLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVG 817 (898)
T ss_pred eec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhh
Confidence 999 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHh
Q 008433 481 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 481 ~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~ 560 (565)
||||||+|.++++|+++++++++.++|++. .+.++||++++++..+|++|.+.++++|+.|++||++||+||||++++
T Consensus 818 ~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~--~~~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GGiL~yv~~~~ 895 (898)
T PTZ00092 818 MGILPLQFLNGENADSLGLTGKEQFSIDLN--SGELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKL 895 (898)
T ss_pred cCcceeecCCcccHHHhcCCCCeEEEEecc--ccccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999988999888762 236899998888767899999999999999999999999999999998
Q ss_pred hh
Q 008433 561 IN 562 (565)
Q Consensus 561 ~~ 562 (565)
++
T Consensus 896 ~~ 897 (898)
T PTZ00092 896 VK 897 (898)
T ss_pred hc
Confidence 75
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.8e-157 Score=1321.23 Aligned_cols=549 Identities=62% Similarity=1.031 Sum_probs=510.4
Q ss_pred HHHHHHHcCCCCCCCCCC-CCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 2 IESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 2 v~~yl~~~g~~~~~~~~d-~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
+++|.|+|++|+. | ++|.|++++|||||+|+|+||||++|||++||+++.+.|.+++....+.+|+.+..+.
T Consensus 323 ~~~y~k~~~l~~~----d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~--- 395 (876)
T TIGR01341 323 VEKYARAQGLFYD----DSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEP--- 395 (876)
T ss_pred HHHHHHhcccccC----CCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhhh---
Confidence 4556666666653 4 7999999999999999999999999999999999999988877644333333321111
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
....++|++..+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|
T Consensus 396 -~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L 474 (876)
T TIGR01341 396 -LKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYL 474 (876)
T ss_pred -hheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHH
Confidence 1112458888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCC
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 240 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 240 (565)
+++||+|++||||+||||++++.++++++|.+++++.+||+|+||||+||||+..+++|||||+|||||||+|+|++|++
T Consensus 475 ~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~ 554 (876)
T TIGR01341 475 EELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLY 554 (876)
T ss_pred HHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCcc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCC
Q 008433 241 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKD 320 (565)
Q Consensus 241 t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~ 320 (565)
|||++.+++|++|||+||||+.+|+++++.+.++++||+..|..++.|++.|+.++.|+++.|+||++||||++||||++
T Consensus 555 ~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~ 634 (876)
T TIGR01341 555 TEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEE 634 (876)
T ss_pred CCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhc
Q 008433 321 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 400 (565)
Q Consensus 321 ~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n 400 (565)
++..++...+|.++|||+++||+||||||||||+|+++||||+||+++||.++|||||||||||||||+||||+|+|+.|
T Consensus 635 ~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N 714 (876)
T TIGR01341 635 MKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKN 714 (876)
T ss_pred cccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhh
Confidence 98777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhcc
Q 008433 401 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 480 (565)
Q Consensus 401 ~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin 480 (565)
+|++|.+|++|+|+|+|+.++|||+|++|+++|.|+|||||+|||||||||||||++++|||+||||+||+||||+||+|
T Consensus 715 ~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~ 794 (876)
T TIGR01341 715 LMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVG 794 (876)
T ss_pred hcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEE--cCCC--eEEEEEeeCCCHHHHHHHHhcCHHHHH
Q 008433 481 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYV 556 (565)
Q Consensus 481 ~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~--~~~g--~~~~~~~~~~t~~e~~~~~aGGll~yv 556 (565)
||||||+|.++++|++|+++++|.++|.. ...++||++++++ ..+| ++|.+.+++||+.|++||++||+||||
T Consensus 795 ~Gilpl~~~~~~~~~~l~l~g~e~~~i~~---~~~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv 871 (876)
T TIGR01341 795 MGVIPLQFPQGEDAETLGLTGDETIDIDG---IKDLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYV 871 (876)
T ss_pred cCcceEecCCCCCHHHhCCCCCCeEEEcC---ccccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999988852 2257899887764 3567 578888999999999999999999999
Q ss_pred HHHhh
Q 008433 557 IRNLI 561 (565)
Q Consensus 557 ~~~~~ 561 (565)
+|+++
T Consensus 872 ~r~~~ 876 (876)
T TIGR01341 872 LRKFL 876 (876)
T ss_pred HHhhC
Confidence 99874
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=4.3e-157 Score=1321.98 Aligned_cols=547 Identities=56% Similarity=0.952 Sum_probs=508.9
Q ss_pred CHHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 1 MIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 1 ~v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
|+++|.|+|++|.+ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++......+++...
T Consensus 339 l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~------ 409 (889)
T PRK12881 339 LVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGFAKK------ 409 (889)
T ss_pred HHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhHHHhhhhhcc------
Confidence 46788888888875 688999999999999999999999999999999999999998876432222221110
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
...+...++.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|
T Consensus 410 ----~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l 485 (889)
T PRK12881 410 ----AQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYL 485 (889)
T ss_pred ----cccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcCcHHHH
Confidence 0023456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCC
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 240 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 240 (565)
+++||+|++|||||||||++++.++++++|++|+++++||+|+||||+||||+..+++|||||+|||||||+|+|++|++
T Consensus 486 ~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 565 (889)
T PRK12881 486 EKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLM 565 (889)
T ss_pred HHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHHHhcCceecCCC
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCC
Q 008433 241 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKD 320 (565)
Q Consensus 241 t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~ 320 (565)
+||+++++||++|||+||||+.+|+++++.+.+++++|...|+.++++++.|+.++.|.++.|+||++||||++||||++
T Consensus 566 ~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~StyI~~pPff~~ 645 (889)
T PRK12881 566 TEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDF 645 (889)
T ss_pred CCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeeccCCCCCcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhc
Q 008433 321 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 400 (565)
Q Consensus 321 ~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n 400 (565)
+...++...+|.++|||+++||+||||||||||+|+++||||+||+++||.++|||||||||||||||+||||+|+|+.|
T Consensus 646 ~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF~nir~~N 725 (889)
T PRK12881 646 SMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKN 725 (889)
T ss_pred cccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhccccCcccc
Confidence 88777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhcc
Q 008433 401 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 480 (565)
Q Consensus 401 ~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin 480 (565)
+|+++.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+|
T Consensus 726 ~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~ 805 (889)
T PRK12881 726 LMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVG 805 (889)
T ss_pred eeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEE--cCCCe--EEEEEeeCCCHHHHHHHHhcCHHHHH
Q 008433 481 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGGILQYV 556 (565)
Q Consensus 481 ~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~--~~~g~--~~~~~~~~~t~~e~~~~~aGGll~yv 556 (565)
||||||+|.++.+|++|+++++|.++|+... ..++||+++++. ..+|+ +|.+.++++|+.|++||++||||||+
T Consensus 806 ~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~--~~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv 883 (889)
T PRK12881 806 MGVLPLQFKGGDSRQSLGLTGGETFDIEGLP--GEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYV 883 (889)
T ss_pred cCcceEEeCCccchhhcCcCCCCEEEEeCCc--cccCCCCeEEEEEEeCCCCEEEEEEEeccCCHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999887432 357899887753 45674 56677788899999999999999999
Q ss_pred HHHhhh
Q 008433 557 IRNLIN 562 (565)
Q Consensus 557 ~~~~~~ 562 (565)
++++++
T Consensus 884 ~~~~~~ 889 (889)
T PRK12881 884 LRQLLA 889 (889)
T ss_pred HHHhhC
Confidence 999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=6.4e-157 Score=1318.10 Aligned_cols=544 Identities=58% Similarity=1.013 Sum_probs=510.3
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccccc
Q 008433 2 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKV 81 (565)
Q Consensus 2 v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (565)
+++|.|+|++|+. +|++|.|+++|+||||+|+|+||||++|||++||+|+++.+++++.. +.+++ .
T Consensus 340 ~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~--~~~~~---------~ 405 (888)
T PRK09277 340 VEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAEL--GVQGF---------G 405 (888)
T ss_pred HHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchh--hhhhh---------h
Confidence 5667777777763 68899999999999999999999999999999999999987765321 11111 1
Q ss_pred ceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHH
Q 008433 82 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 161 (565)
Q Consensus 82 ~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~ 161 (565)
.+..++|...++.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 406 ~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~ 485 (888)
T PRK09277 406 LDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLE 485 (888)
T ss_pred hhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChHHHHH
Confidence 23457888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCCC
Q 008433 162 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 241 (565)
Q Consensus 162 ~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~t 241 (565)
++||+|++|||||||||++++.++++++|.+|+++++||+|+||||+||||+..+++|||||+|||||||+|+|++|+++
T Consensus 486 ~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~I~~d~~~ 565 (888)
T PRK09277 486 ALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEK 565 (888)
T ss_pred HcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCCC
Q 008433 242 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 321 (565)
Q Consensus 242 ~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~~ 321 (565)
||++++++|++|||+||||+.+||++++.+.+++++|+..|..++.+++.|+.++.|+++.|+||++||||++||||++|
T Consensus 566 dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~ 645 (888)
T PRK09277 566 DPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGM 645 (888)
T ss_pred CCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCccccCCCCCcccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhcc
Q 008433 322 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 401 (565)
Q Consensus 322 ~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~ 401 (565)
+..++...+|.++|||+++||+||||||||||+|+++||||+||+++||.++|||||||||||||+|+||||+|+|++|+
T Consensus 646 ~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~RgtfaNir~~N~ 725 (888)
T PRK09277 646 LAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNE 725 (888)
T ss_pred cccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheeccccchhhh
Confidence 87777678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccC
Q 008433 402 LLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 481 (565)
Q Consensus 402 ~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~ 481 (565)
|++|.+|++|+|+|+|+.++|||+|++|+++|.++|||||+|||||||||||||++++|||+||||+||+|||++||+||
T Consensus 726 l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~ 805 (888)
T PRK09277 726 MVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGM 805 (888)
T ss_pred cccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEE--EcCCC--eEEEEEeeCCCHHHHHHHHhcCHHHHHH
Q 008433 482 GIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRV--VTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVI 557 (565)
Q Consensus 482 GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v--~~~~g--~~~~~~~~~~t~~e~~~~~aGGll~yv~ 557 (565)
|||||+|.++++|++|+++++|.++|... .+++||+++++ +..+| ++|.+.+++||+.|++||++||+|||++
T Consensus 806 Gilpl~~~~~~~~~~lgl~g~e~~~i~~l---~~l~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~ 882 (888)
T PRK09277 806 GVLPLQFKPGESRKTLGLDGTETFDIEGL---EDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVL 882 (888)
T ss_pred CcceeecCCcccHHHhCCCCCceEEEcCc---ccCCCCCEEEEEEEeCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999888532 13889988876 34566 5788889999999999999999999999
Q ss_pred HHhhh
Q 008433 558 RNLIN 562 (565)
Q Consensus 558 ~~~~~ 562 (565)
+++++
T Consensus 883 r~~~~ 887 (888)
T PRK09277 883 RDLLA 887 (888)
T ss_pred HHHhh
Confidence 99875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=1.9e-151 Score=1268.15 Aligned_cols=524 Identities=44% Similarity=0.786 Sum_probs=487.2
Q ss_pred CHHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 1 MIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 1 ~v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
++++|.|+|++|.+ +|++|.|+++||||||+|||+||+|++|||++|++|+++.. +..
T Consensus 326 lve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~------------~~~------- 383 (858)
T TIGR02333 326 LVETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARG------------IAG------- 383 (858)
T ss_pred HHHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcc------------ccc-------
Confidence 35677777778775 57899999999999999999999999999999999987531 100
Q ss_pred cceeecCC-CcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 81 VAEFNFHG-TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 81 ~~~~~~~g-~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
.+++ ...++.||+|+||+|||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 384 ----~~~~~~~g~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 459 (858)
T TIGR02333 384 ----PAEEQPEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPE 459 (858)
T ss_pred ----cccccccCcccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHH
Confidence 0000 12268899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCC
Q 008433 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDF 239 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~ 239 (565)
|+++||.|++|||||||||+|++.++++++|.+++++.++|+|+||||+||||+..+.+|||||+|||||||+|+|++|+
T Consensus 460 L~~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~ 539 (858)
T TIGR02333 460 LEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDI 539 (858)
T ss_pred HHHcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCC
Q 008433 240 ETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFK 319 (565)
Q Consensus 240 ~t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~ 319 (565)
+||||+.|+||++|||+||||+.+||++++.+.+++++|++.|+.++++++ +..+.+++|+||++||||++||||+
T Consensus 540 ~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~ 615 (858)
T TIGR02333 540 EKDVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWE 615 (858)
T ss_pred CcCccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCcc
Confidence 999999999999999999999999999999999999999999999998876 6788899999999999999999999
Q ss_pred CCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchh
Q 008433 320 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 399 (565)
Q Consensus 320 ~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~ 399 (565)
+++ +...+|+++|+|+++||+||||||||||+|+++||||+||+++||.+++||+||+||||||+|+||||+|+|++
T Consensus 616 ~~~---~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~ 692 (858)
T TIGR02333 616 GAL---AGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLF 692 (858)
T ss_pred CCC---CcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhh
Confidence 873 44578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC--C--ccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHh
Q 008433 400 NKLLN--G--EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHR 475 (565)
Q Consensus 400 n~~~~--~--~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~ 475 (565)
|+|++ | ++|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+|||+
T Consensus 693 N~l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~ 772 (858)
T TIGR02333 693 NEMVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHR 772 (858)
T ss_pred hhhccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHH
Confidence 99998 4 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEE--cCCCe--EEEEEeeCCCHHHHHHHHhcC
Q 008433 476 SNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGG 551 (565)
Q Consensus 476 ~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~--~~~g~--~~~~~~~~~t~~e~~~~~aGG 551 (565)
+||+|||||||+|.++++|++|+++++|.++|. + +++||+++++. ..+|+ +|.+.+++||+.|++||++||
T Consensus 773 ~Nl~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~Gg 847 (858)
T TIGR02333 773 TNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGG 847 (858)
T ss_pred hhhhhcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCC
Confidence 999999999999999999999999999988873 2 47899987764 45774 678888999999999999999
Q ss_pred HHHHHHHHhhh
Q 008433 552 ILQYVIRNLIN 562 (565)
Q Consensus 552 ll~yv~~~~~~ 562 (565)
+||||+|+++.
T Consensus 848 iL~~v~~~~~~ 858 (858)
T TIGR02333 848 VLQRFAQDFLE 858 (858)
T ss_pred HHHHHHHHhhC
Confidence 99999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=4.2e-151 Score=1250.71 Aligned_cols=531 Identities=57% Similarity=0.988 Sum_probs=497.3
Q ss_pred CHHHHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 1 MIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 1 ~v~~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
||++|+++||+|.+. +|++|+|+++||||||+|+|+||||++||++++|++++++|.+.+.+.....
T Consensus 327 lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~----------- 393 (861)
T COG1048 327 LVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKR----------- 393 (861)
T ss_pred HHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhccc-----------
Confidence 589999999999873 6789999999999999999999999999999999999999988665432211
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
.+...|. .+.||+|+||+|||||||||||+|+||++|||+|+++|++++|||||+|+|||++|.+||+++||+++|
T Consensus 394 --~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L 469 (861)
T COG1048 394 --VYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYL 469 (861)
T ss_pred --ccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHH
Confidence 1222333 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCC
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 240 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 240 (565)
+++||+++++|||||||||++|+++++++|.+|++++++|+|+||||+||+||..+++|||||+||+||||||++.+|++
T Consensus 470 ~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~ 549 (861)
T COG1048 470 EKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLT 549 (861)
T ss_pred HhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCC
Q 008433 241 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKD 320 (565)
Q Consensus 241 t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~ 320 (565)
++|++.+.+|++|||+||||+.+||.+.+.+.+.+++|+..|..+++ |+.++.|++++|.|++.||||+.||||+.
T Consensus 550 ~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP~f~~ 625 (861)
T COG1048 550 TDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDG 625 (861)
T ss_pred cCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCCcccc
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999999999988
Q ss_pred CCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhc
Q 008433 321 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 400 (565)
Q Consensus 321 ~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n 400 (565)
+...+.. |+++|+|+++||+||||||||||+|+++|||++||..+|+.+.|||+|||||||||+|+|+||+|+|++|
T Consensus 626 ~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n 702 (861)
T COG1048 626 MGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRN 702 (861)
T ss_pred ccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhccccccc
Confidence 7654433 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhcc
Q 008433 401 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 480 (565)
Q Consensus 401 ~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin 480 (565)
+++++ +|++|+|+|+|+ |||+|++|+++|.|+|||||+|||+||||||||+++++|||+||||+|||||||+||||
T Consensus 703 ~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrSNLi~ 778 (861)
T COG1048 703 EMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLIG 778 (861)
T ss_pred ccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHhhccc
Confidence 99998 899999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEE--cCCCe--EEEEEeeCCCHHHHHHHHhcCHHHHH
Q 008433 481 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGGILQYV 556 (565)
Q Consensus 481 ~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~--~~~g~--~~~~~~~~~t~~e~~~~~aGGll~yv 556 (565)
||||||+|.++++|++|++++.+.+.|.+.+ .++|+.+++|+ ..||. ++.+.++++|+.|++|+++||+|||+
T Consensus 779 mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGiL~~v 855 (861)
T COG1048 779 MGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYV 855 (861)
T ss_pred ceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCchHHHH
Confidence 9999999999999999999998887777543 57788876654 45664 57778889999999999999999999
Q ss_pred HHHhhh
Q 008433 557 IRNLIN 562 (565)
Q Consensus 557 ~~~~~~ 562 (565)
++++++
T Consensus 856 ~~~~~~ 861 (861)
T COG1048 856 KRDLLK 861 (861)
T ss_pred HHHhhC
Confidence 998763
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=4.1e-110 Score=936.48 Aligned_cols=458 Identities=28% Similarity=0.437 Sum_probs=374.4
Q ss_pred HHHHHHHcCCCC----------CC--CCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCC
Q 008433 2 IESYLRANKMFV----------DY--SEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 69 (565)
Q Consensus 2 v~~yl~~~g~~~----------~~--~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~ 69 (565)
+.+||+.+++.. .| ..+|++|.|+++++||||+|||+||+|++|||++||+|+.+++++
T Consensus 266 T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------- 336 (745)
T TIGR01340 266 MSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------- 336 (745)
T ss_pred HHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccceeEeecCCCChhcccChHHhCchhhh---------
Confidence 679999998632 12 258999999999999999999999999999999999999875432
Q ss_pred CccCccccccccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHH
Q 008433 70 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 149 (565)
Q Consensus 70 g~~~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~ 149 (565)
.|++ ..|++||||||||||++||+.|| .|+|+|++ +++++.|+++|+|||++|++
T Consensus 337 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~--~~v~~~v~~~v~PgS~~V~~ 391 (745)
T TIGR01340 337 -----------------NGWP-----EKLSAGLIGSCTNSSYEDMSRCA-SIVKDAEQ--AGLKPKSPFYVTPGSEQIRA 391 (745)
T ss_pred -----------------cCCC-----ceecEEEEEcCCCCCHHHHHHHH-HHhhhhhh--CCCCCCCCEEEECCCHHHHH
Confidence 0122 13568999999999999976655 55566654 56677899999999999999
Q ss_pred HHHHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCC-CccCCceecCHHHHHH
Q 008433 150 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVA 228 (565)
Q Consensus 150 ~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g-~~~~~~yLaSP~lvaA 228 (565)
+|+++|++++|+++||.|++||||||+|+++++. .+.+|+.+ ++|||+||||+|||| +..+.+|||||++|||
T Consensus 392 ~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaA 465 (745)
T TIGR01340 392 TLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTA 465 (745)
T ss_pred HHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHH
Confidence 9999999999999999999999999999987543 23467754 689999999999995 4567899999999999
Q ss_pred HHHhCCccCCCCCCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCC--CCCccccC
Q 008433 229 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWD 306 (565)
Q Consensus 229 ~AlaG~i~~d~~t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~--~~~~~~wd 306 (565)
+||+|+|++|++|||+ .+++|++|||+ ||+.+|+++. +| ..++..|+.+..+ ++..|.|+
T Consensus 466 sAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~ 527 (745)
T TIGR01340 466 MSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK--------GF-------EAGRDTFQAPPGSPNPNVEVAVS 527 (745)
T ss_pred HHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh--------cc-------cCCccceeCCCCCCCCCceEEeC
Confidence 9999999999999999 59999999998 8999998864 22 2346678776554 67899999
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchh
Q 008433 307 PKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDE 386 (565)
Q Consensus 307 ~~st~i~~~P~~~~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~e 386 (565)
++|+||++||+|++|+ ..+|.++|||+|+||+|||||||||| .||.+| ||.+
T Consensus 528 p~s~~i~~~~~f~~~~-----~~~i~~a~vLlk~gd~iTTDHIsPAG---------~~L~~r--------------g~~~ 579 (745)
T TIGR01340 528 PSSDRLQLLEPFEPWN-----GKDLSGLRVLIKVTGKCTTDHISAAG---------PWLKYK--------------GHLD 579 (745)
T ss_pred CCCCCCCCCCCCCCCC-----cCCccCCeEEEEECCCcChhcccccc---------hhHhhc--------------CChh
Confidence 9999999999998773 35688999999999999999999998 489875 4544
Q ss_pred hhhcccccccchhccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEE
Q 008433 387 IMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVI 466 (565)
Q Consensus 387 vm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVI 466 (565)
.+.+++|.. ..|.. .++. .+.+.|+|+.++++++|++|++.+.++|||||+||||||||||||+++++|||+|||
T Consensus 580 ~i~~n~~~~--~~n~~-~~~~--~~~~~~~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVI 654 (745)
T TIGR01340 580 NISNNTLIG--AVNAE-TGEV--NKAYDLDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIII 654 (745)
T ss_pred hhhcceecc--ccccc-CCce--eEEEcCCCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEE
Confidence 444445432 12222 1111 456667999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHhhhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCC---CceEEE--EcCCCe--EEEEEeeCC
Q 008433 467 AKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRP---GQDVRV--VTDSGK--SFTCVIRFD 539 (565)
Q Consensus 467 A~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~---g~~i~v--~~~~g~--~~~~~~~~~ 539 (565)
|+|||||||+||||||||||+|.++++|+.+. .+++...+.+. ++.+ ++.+++ +..+|+ +|.+.+++
T Consensus 655 A~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~-~gd~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l- 728 (745)
T TIGR01340 655 TKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PGDEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV- 728 (745)
T ss_pred EehHHHHHHhhhhhcCceeEEecCCccHhhcC-CCCEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-
Confidence 99999999999999999999999999999876 34433222233 2333 556663 344554 67777777
Q ss_pred CHHHHHHHHhcCHHHHH
Q 008433 540 TEVELAYFDHGGILQYV 556 (565)
Q Consensus 540 t~~e~~~~~aGGll~yv 556 (565)
|+.|++||++||+|||+
T Consensus 729 t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 729 SKDQIGFFKAGSALNLM 745 (745)
T ss_pred CHHHHHHHHcCCcccCC
Confidence 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.2e-100 Score=855.38 Aligned_cols=412 Identities=32% Similarity=0.484 Sum_probs=349.7
Q ss_pred HHHHHHHcCCCCCCC--CCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKMFVDYS--EPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~~~~~~--~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++||+.+|+..+|. .+|++|.|+++++||||+|||+||+|++|||++||+|+.+ .+
T Consensus 230 t~~yL~~~gr~~~~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~--------------~~------- 288 (646)
T PRK07229 230 TREFLKAQGREDDWVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAG--------------IK------- 288 (646)
T ss_pred HHHHHHhcCCcccceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCC--------------Ce-------
Confidence 579999999855443 6899999999999999999999999999999999999873 12
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
|++||||||||||++||++||++| +|+||+++||++|+|||++|+++|+++|++++
T Consensus 289 ------------------I~~a~IGSCTN~~~~Dl~~aA~iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~ 344 (646)
T PRK07229 289 ------------------VDQVLIGSCTNSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDGALAD 344 (646)
T ss_pred ------------------EEEEEEecCCCCChHHHHHHHHHh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHH
Confidence 467999999999999999999999 79999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCC
Q 008433 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDF 239 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~ 239 (565)
|+++||.|.+||||+|+|+++.+. ++++ +|||+||||+||||+..+.+|||||++|||+||+|+|+ |+
T Consensus 345 l~~aGa~i~~~gCg~CiG~g~~~~--------~~~~---~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp 412 (646)
T PRK07229 345 LIAAGARILENACGPCIGMGQAPA--------TGNV---SLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DP 412 (646)
T ss_pred HHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Ch
Confidence 999999999999999999965443 4555 79999999999999999999999999999999999999 88
Q ss_pred CCCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCC
Q 008433 240 ETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFK 319 (565)
Q Consensus 240 ~t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~ 319 (565)
.++|++. |+++||+ ||+ .+.+++.+|.. ..+ +.+++++.++||++
T Consensus 413 ~~~~~~~---g~~~~~~--~p~--------~~~~~~~~~~~-------~~~---------------~~~~~~~~~~p~~~ 457 (646)
T PRK07229 413 RTLALEN---GEYPKLE--EPE--------GFAVDDAGIIA-------PAE---------------DGSDVEVVRGPNIK 457 (646)
T ss_pred hhccccc---CCcceec--CCc--------cccCChhhhcC-------CCc---------------ccccccccCCCCCC
Confidence 8888765 8899996 786 12334444421 111 23478888899999
Q ss_pred CCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchh
Q 008433 320 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 399 (565)
Q Consensus 320 ~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~ 399 (565)
++|...+.+ ++..+++|+++|||||||||||+|. +||+ +|+|++.|++++|.+. .
T Consensus 458 ~~~~~~~~~-~~~~~~vl~~~gd~i~TD~I~Pa~~--------~~l~--------------~r~~~~~l~~~~f~~~--~ 512 (646)
T PRK07229 458 PLPLLEPLP-DLLEGKVLLKVGDNITTDHIMPAGA--------KWLP--------------YRSNIPNISEFVFEGV--D 512 (646)
T ss_pred CCccCCCCC-cCceEEEEEEcCCCCChhccCcCCc--------chhc--------------cCCCHHHHHHHHhccC--C
Confidence 988776654 5559999999999999999999974 4776 4789999999999973 2
Q ss_pred ccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhc
Q 008433 400 NKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 479 (565)
Q Consensus 400 n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nli 479 (565)
| +++.+++..+ ++|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 513 ~-----------------------~f~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~i 568 (646)
T PRK07229 513 N-----------------------TFPERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLI 568 (646)
T ss_pred h-----------------------hhhHHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHH
Confidence 2 2234566544 899999999999999999999999999999999999999999999
Q ss_pred cCCccceecCCCccccccCCCCCeEEEE-EcCCCccccCCCceEEEEc-CCCeEEEEEeeCCCHHHHHHHHhcCHHHHHH
Q 008433 480 GMGIIPLCFKPGEDAETHGLTGHERYTI-DLPSSVSEIRPGQDVRVVT-DSGKSFTCVIRFDTEVELAYFDHGGILQYVI 557 (565)
Q Consensus 480 n~GiLPL~f~~~~~~~~l~l~~~e~~~i-~l~~~~~~~~~g~~i~v~~-~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~ 557 (565)
|||||||+|.++++|+.+. .+|.++| ++. ++.++.+|+++. .+|+++.++.++ ++.|++|+++||+|||++
T Consensus 569 n~Gllpl~~~~~~~~~~l~--~gd~i~i~dl~----~~~~~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~ 641 (646)
T PRK07229 569 NFGILPLTFADPADYDKIE--EGDVLEIEDLR----EFLPGGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIK 641 (646)
T ss_pred hcCCceEEecChHhHhhcC--CCCEEEEccch----hcCCCCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHH
Confidence 9999999998888898764 4677777 554 344555655532 457888887777 899999999999999999
Q ss_pred HHhh
Q 008433 558 RNLI 561 (565)
Q Consensus 558 ~~~~ 561 (565)
+++.
T Consensus 642 ~~~~ 645 (646)
T PRK07229 642 KKLA 645 (646)
T ss_pred Hhcc
Confidence 9753
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1e-99 Score=846.47 Aligned_cols=420 Identities=30% Similarity=0.444 Sum_probs=348.1
Q ss_pred HHHHHHHcCCCCCCC--CCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKMFVDYS--EPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~~~~~~--~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++||+.+++..+|. .||++|.|+++++||||+|||+||+|++|||++||+|+++ +++
T Consensus 227 t~~yl~~~~r~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g--------------~~i------ 286 (658)
T TIGR01342 227 TEAWLAAFDREDDFVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAG--------------IEV------ 286 (658)
T ss_pred HHHHHHhcCCchheeeccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCC--------------cee------
Confidence 579999998855443 6999999999999999999999999999999999999873 333
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
+++|||||||+|++||++||++| +|+||+++|+++|+|||++|+++|+++|++++
T Consensus 287 -------------------d~v~IGSCTn~~~~Dl~~aA~il------~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~ 341 (658)
T TIGR01342 287 -------------------DQVMIGSCTNGAFEDLLPAAKLL------EGREVHKDTEFAVAPGSKQALELIAQEGALAE 341 (658)
T ss_pred -------------------eeEEEeCCCCCChHHHHHHHHHh------CCCccCCCccEEEeCCcHHHHHHHHHcCcHHH
Confidence 35899999999999999999999 79999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCC
Q 008433 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDF 239 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~ 239 (565)
|+++||+|+++|||+|+|+++.+. ++++ +|||+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 342 l~~aGa~i~~~gCg~CiG~~~~~~--------~~~~---~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i---- 406 (658)
T TIGR01342 342 FLAAGANFLEAACGACIGIGFAPA--------SDGV---SLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEI---- 406 (658)
T ss_pred HHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc----
Confidence 999999999999999999976654 3454 7999999999999999889999999999999999999
Q ss_pred CCCCcccC-CCCcccccccC-CCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCC
Q 008433 240 ETEPVGVG-KDGKKIFLRDI-WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPY 317 (565)
Q Consensus 240 ~t~pl~~~-~~g~~v~l~d~-~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~ 317 (565)
+||..+. .+| |+ ||+.++ |+.|...|... .|+.++.. +..++++.++||
T Consensus 407 -~dp~~l~~~~g------~~~~p~~~~----------p~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~p~ 457 (658)
T TIGR01342 407 -IDPRDLADDEG------DLEAIGFEM----------GEKFPGGYDAA-----DIDIIPKE-------EREDDDIIKGPN 457 (658)
T ss_pred -CCHHHhccccC------cccCCCCCC----------chhhccccccc-----ccccCCCC-------CCCCcceeeCCC
Confidence 3555432 233 23 776432 34454444432 27666532 345667777888
Q ss_pred CCCCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccc
Q 008433 318 FKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIR 397 (565)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r 397 (565)
++++|.+.+.+++|++ |+++++|||||||||+|+|. .||. +|+|.+.|.+++|...+
T Consensus 458 i~~~p~~~~~~~~i~g-rv~~~~gDnI~TD~I~Pa~~--------~~l~--------------~r~~~~~l~~~~~~~~~ 514 (658)
T TIGR01342 458 IKPLPEFDPLGADIEG-ETALIMEDNITTDHIIPAGA--------DILK--------------FRSNIEAISEFTLHRID 514 (658)
T ss_pred CCCCCCCCCCccccCc-eEEEEcCCCCChhcCCCCCc--------cccc--------------cCCCHHHHhhheeeCCC
Confidence 8888888777788865 99999999999999999975 3453 37899999999997521
Q ss_pred hhccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhh
Q 008433 398 LVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 477 (565)
Q Consensus 398 ~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~N 477 (565)
| .+.+.+++|++.+.++|||||+||||||||||||+++++|||+||||+||+|||++|
T Consensus 515 -----------p-----------~f~~~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N 572 (658)
T TIGR01342 515 -----------D-----------EFAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHAN 572 (658)
T ss_pred -----------c-----------hHHHHhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhh
Confidence 1 123567888888889999999999999999999999999999999999999999999
Q ss_pred hccCCccceecCCCccccccCCCCCeEEEEE--cCCCccccCCCceEEEE-cCCCeEEEEEeeCCCHHHHHHHHhcCHHH
Q 008433 478 LVGMGIIPLCFKPGEDAETHGLTGHERYTID--LPSSVSEIRPGQDVRVV-TDSGKSFTCVIRFDTEVELAYFDHGGILQ 554 (565)
Q Consensus 478 lin~GiLPL~f~~~~~~~~l~l~~~e~~~i~--l~~~~~~~~~g~~i~v~-~~~g~~~~~~~~~~t~~e~~~~~aGGll~ 554 (565)
|+|+|||||+|+++++|+++.. ++.++|+ +. +.+.+|+..++. ..+|.++.+.+.+ ++.|++||++|||||
T Consensus 573 ~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~---~~~~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln 646 (658)
T TIGR01342 573 LFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLA---AALADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLN 646 (658)
T ss_pred hhhcCcceEEecChhhHHHhCC--CCEEEECchhh---hhcCCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHH
Confidence 9999999999998889998764 5555775 53 357888644443 3456666665444 899999999999999
Q ss_pred HHHHHhh
Q 008433 555 YVIRNLI 561 (565)
Q Consensus 555 yv~~~~~ 561 (565)
|++++..
T Consensus 647 ~~~~~~~ 653 (658)
T TIGR01342 647 LIKNKHR 653 (658)
T ss_pred HHHHhhc
Confidence 9998764
No 12
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=3.8e-93 Score=796.49 Aligned_cols=454 Identities=19% Similarity=0.218 Sum_probs=347.0
Q ss_pred HHHHHHHcCCCCCCC--CCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKMFVDYS--EPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~~~~~~--~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++||+.++|..+|. .||++|.||++++||||+|+|+||+|++|||++||+|+.+++.+++..++.. +..+
T Consensus 260 t~~yL~~~gr~~~~~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~~~-~~~~------ 332 (751)
T PRK11413 260 VHNWLALHGRGQDYCELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVEIE-SERV------ 332 (751)
T ss_pred HHHHHHhCCChhhceeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchhhhh-hhhh------
Confidence 689999999865654 6999999999999999999999999999999999999999998887754211 1111
Q ss_pred ccceeecCC--CcccccCC--CeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC-CCeeEEEEcCCHHHHHHHHHc
Q 008433 80 KVAEFNFHG--TPAQLRHG--DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK-PWIKTSLAPGSGVVTKYLQNS 154 (565)
Q Consensus 80 ~~~~~~~~g--~~~~~~~g--~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~-~~vk~~v~PgS~~V~~~l~~~ 154 (565)
...+++ +..++.++ .|++||||||||||++||+.||++| +|++|+ ++|+++|+|||++|+++|+++
T Consensus 333 ---~~~~~~~~~~~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~ 403 (751)
T PRK11413 333 ---AHGKAKLSLLDKIENGRLKVQQGIIAGCSGGNYENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKK 403 (751)
T ss_pred ---hhhhccccccccccCCCcEeeeEEEecCCCCCHHHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHc
Confidence 112222 12344433 3678999999999999999999999 899998 679999999999999999999
Q ss_pred ChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCC-----ceecCHHHHHHH
Q 008433 155 GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRA-----NYLASPPLVVAY 229 (565)
Q Consensus 155 Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~-----~yLaSP~lvaA~ 229 (565)
|++++|+++||.|.++|||||+|+++.+. ++++ ||+|+||||+||||++.++ +||+||+++||+
T Consensus 404 G~~~~l~~AGa~i~~~gCgpCiG~~~~~~--------~ge~---~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aas 472 (751)
T PRK11413 404 GVVADLMGAGAIIRTAFCGPCFGAGDTPA--------NNGL---SIRHTTRNFPNREGSKPANGQMSAVALMDARSIAAT 472 (751)
T ss_pred CcHHHHHHcCCEECCCchhhhhCcCCcCC--------CCCE---EEeecCCCCCCCCCCccccceecccccCCHHHHHHH
Confidence 99999999999999999999999986643 4665 7999999999999999887 677778989999
Q ss_pred HHh-CCccCCCCCCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCC
Q 008433 230 ALA-GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 308 (565)
Q Consensus 230 Ala-G~i~~d~~t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~ 308 (565)
|+. |+| |+|.+++. ++ +.+ .+.++..+|.. +.+.+. .. +..
T Consensus 473 a~~gG~i-----t~p~~~~~----------~~---~~p---~~~~~~~~y~~---~~~~~~------~~--------~~~ 514 (751)
T PRK11413 473 AANGGYL-----TSATELDC----------WD---NVP---EYAFDVTPYKN---RVYQGF------GK--------GAT 514 (751)
T ss_pred HHhCCcc-----CCHHHccc----------cc---cCC---CcccCcccccc---ccccCC------CC--------CCC
Confidence 998 688 46765431 11 111 24566666542 122110 11 256
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccceEEeecCCCcc-cccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhh
Q 008433 309 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 387 (565)
Q Consensus 309 st~i~~~P~~~~~~~~~~~~~~i~~~~vl~~~gD~it-TDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~ev 387 (565)
+++|.++|||++||.+.+++++| .++|+.|++|||| ||||||||+ ||.+ |||.+.
T Consensus 515 ~~~~~~gPni~~~p~~~~l~~~~-~~kv~~k~~D~itTTD~i~paG~---------~l~~--------------Rsn~~~ 570 (751)
T PRK11413 515 QQPLIYGPNIKDWPEMGALTDNI-LLKVCSKILDPVTTTDELIPSGE---------TSSY--------------RSNPLG 570 (751)
T ss_pred cceEEeCcCCCCCCCCCCCCCcE-EEEEEEEeCCCCccccccccCCC---------cccc--------------ccCHHH
Confidence 78999999999999999999999 8999999999996 999999994 6654 899999
Q ss_pred hhcccccccchhccccCCccCC---ceeccCCCccchhhhHHHHH--------------HhcCCceEEEecCCcCCCCch
Q 008433 388 MARGTFANIRLVNKLLNGEVGP---KTIHIPTGEKLSVFDAAMRY--------------KNEGHDTVILAGAEYGSGSSR 450 (565)
Q Consensus 388 m~rg~f~n~r~~n~~~~~~~g~---~t~~~p~g~~~~i~~~a~~y--------------~~~g~~~iIVAG~nyG~GSSR 450 (565)
+++++|.. ..|.|+.. ... .-....+|. +.+.++.| ++.|.++||+| .||||||||
T Consensus 571 is~~~~~~--~d~~~~~r-a~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSR 643 (751)
T PRK11413 571 LAEFTLSR--RDPGYVGR-SKAVAELENQRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAR 643 (751)
T ss_pred Hhhhhccc--cChhhHHH-HHHHhhhhhhhhcCC---cHHHHHHHHhhhhccccccccccccCceEEEEE-eCCCCCccH
Confidence 99999976 46666541 110 000011222 22344444 55666766665 999999999
Q ss_pred hhhhhhhhhcCceEEEecchHHH-HhhhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCc-eEE--EEc
Q 008433 451 DWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQ-DVR--VVT 526 (565)
Q Consensus 451 E~AA~~~~~LGv~AVIA~SFarI-h~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~-~i~--v~~ 526 (565)
||||++|++|||+||||+||||| ||+||||+|||||+|.+.. + +..++.++|+. ..+.+..+. .++ +..
T Consensus 644 EhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~---~--i~~GD~l~id~--~~~~l~~~~~~~~~~i~~ 716 (751)
T PRK11413 644 EQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP---T--FEVGDYIYIPG--IRAALDNPGTTFKGYVIH 716 (751)
T ss_pred HHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh---h--CCCCCEEEEec--hhhhhhcCCCceeEEEEe
Confidence 99999999999999999999999 7779999999999998653 3 34567667764 233444442 333 433
Q ss_pred CCC--eEEEEEeeCCCHHHHHHHHhcCHHHHHHH
Q 008433 527 DSG--KSFTCVIRFDTEVELAYFDHGGILQYVIR 558 (565)
Q Consensus 527 ~~g--~~~~~~~~~~t~~e~~~~~aGGll~yv~~ 558 (565)
.+| +.+.+.+.-.++.|++||++||+|||+++
T Consensus 717 ~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 717 EDAPVTEITLYMESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred CCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence 444 34555542349999999999999999975
No 13
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=3e-86 Score=737.67 Aligned_cols=413 Identities=21% Similarity=0.274 Sum_probs=305.7
Q ss_pred CCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccCC
Q 008433 17 EPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHG 96 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g 96 (565)
.||++|.|+++++||||+|+|+||+|++|++++||+++... +.+
T Consensus 278 ~aD~~A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~~~------------------------ 321 (712)
T TIGR00139 278 KADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------DIK------------------------ 321 (712)
T ss_pred CCCCCCCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------Cce------------------------
Confidence 68999999999999999999999999999999999997421 222
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHHhcC---CccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcc
Q 008433 97 DVVIAAITSCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCT 173 (565)
Q Consensus 97 ~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G---~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg 173 (565)
|++||||||||+|++||+.||.+|+++|+++| +||+|+|+++|+|||++|+++|+++|++++|+++||.|.++|||
T Consensus 322 -Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg 400 (712)
T TIGR00139 322 -IDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCG 400 (712)
T ss_pred -eeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccc
Confidence 34699999999999999999999988888763 78999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCCCCCcccCC-CCcc
Q 008433 174 TCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK-DGKK 252 (565)
Q Consensus 174 ~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~t~pl~~~~-~g~~ 252 (565)
+|||+++.+.+ +|++ +|||+||||+||||+..+.+|||||++|||+||+|+|+ ||..+.. .+-+
T Consensus 401 ~CiG~~~~~~~-------~gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~~~~~~ 465 (712)
T TIGR00139 401 PCIGLGAGLLE-------PGEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLSPEGWT 465 (712)
T ss_pred cccCcCCCCCC-------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhcccccc
Confidence 99999987652 4676 69999999999999999999999999999999999994 6654321 0000
Q ss_pred -cccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCc
Q 008433 253 -IFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGV 331 (565)
Q Consensus 253 -v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~~~~~~~~~~~i 331 (565)
+ .--||+. +.......++++++...-..+ +. .+..++...-.-.+++..+.++| +|..++.++.|
T Consensus 466 ~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i 531 (712)
T TIGR00139 466 EI--IFGEGDG--IKEEDRMLTNEEALEKIIGII-DD-----LVADEEKNAASEAPAQEESEQGL----TEILEGFPEEF 531 (712)
T ss_pred cc--ccccccc--ccCcccccCcHHHHhhhhhhc-cC-----ccccchhcccccccccchhccCC----CCcCCCCCceE
Confidence 0 0001111 110011122333332110000 00 00000000000012233455554 34455666677
Q ss_pred ccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCC--chhhhhcccccccchhccccCCccCC
Q 008433 332 KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRG--NDEIMARGTFANIRLVNKLLNGEVGP 409 (565)
Q Consensus 332 ~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~--N~evm~rg~f~n~r~~n~~~~~~~g~ 409 (565)
..++++++||||+||||+|+ +||. |+ ..+.|.+++|.+.+ |
T Consensus 532 -~g~v~~~~gdnI~TD~I~P~----------~~~~---------------~~~~~~~~l~~~~~~~~d-----------p 574 (712)
T TIGR00139 532 -SGELVFCDADNINTDGIYPG----------KYTY---------------QDDVPKEKMAQVCMENYD-----------A 574 (712)
T ss_pred -EEEEEEcCCCCCchhhccch----------hhcc---------------cCCCCHHHHHHhhccCCC-----------c
Confidence 78999999999999999999 6763 23 34688889988632 2
Q ss_pred ceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecC
Q 008433 410 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 489 (565)
Q Consensus 410 ~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~ 489 (565)
+++.+++. +.|||||+|||||||||||+++++++||+||||+||+|||++|++|+|||||+|+
T Consensus 575 --------------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~ 637 (712)
T TIGR00139 575 --------------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIP 637 (712)
T ss_pred --------------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEch
Confidence 34455553 6899999999999999999999999999999999999999999999999999997
Q ss_pred CCccccccC-----------CCCCeEEEEEcCCCccccCCCceEEEEcCC----CeEEEEEeeCCCHHHHHHHHhcCHHH
Q 008433 490 PGEDAETHG-----------LTGHERYTIDLPSSVSEIRPGQDVRVVTDS----GKSFTCVIRFDTEVELAYFDHGGILQ 554 (565)
Q Consensus 490 ~~~~~~~l~-----------l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~----g~~~~~~~~~~t~~e~~~~~aGGll~ 554 (565)
+ ..+.|. ...++.++||+.. | .|++ +.+ ++++.+++.-.++..++||.+|||++
T Consensus 638 ~--~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~-------g-~i~~-t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~ 706 (712)
T TIGR00139 638 A--LIKKLREKFGGADKELTRRTGWFLKWDVAD-------A-KIEV-QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEG 706 (712)
T ss_pred h--HHHHHHhhhcccccccccCCCCEEEEEccC-------C-EEEE-CCCcccccceeEEEcCCCCHHHHHHHHcCCHHH
Confidence 5 233332 1145677888753 3 4544 322 22344554444899999999999999
Q ss_pred HHHHHh
Q 008433 555 YVIRNL 560 (565)
Q Consensus 555 yv~~~~ 560 (565)
|+++++
T Consensus 707 ~~k~~~ 712 (712)
T TIGR00139 707 WVKNAI 712 (712)
T ss_pred HHHhcC
Confidence 999874
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-85 Score=699.19 Aligned_cols=461 Identities=29% Similarity=0.443 Sum_probs=364.8
Q ss_pred HHHHHHHcCCCC----------CCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCc
Q 008433 2 IESYLRANKMFV----------DYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71 (565)
Q Consensus 2 v~~yl~~~g~~~----------~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~ 71 (565)
+.+||++.||-. ++..+|++|.||++||||||+|+|+|.||++|+-..||+++.+...
T Consensus 299 m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~------------ 366 (778)
T KOG0453|consen 299 MIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE------------ 366 (778)
T ss_pred HHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh------------
Confidence 568999998742 1236899999999999999999999999999999999999885311
Q ss_pred cCccccccccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHH
Q 008433 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYL 151 (565)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l 151 (565)
.+||+.+|+ .++||||||+||+|+-.+|.+ +++|..+|+|. .|.+.|+|||.+|+..+
T Consensus 367 --------------kn~wp~~i~-----~gligSCTNSsyeDm~raa~i-v~~a~~~glk~--~v~F~VtpgSeqirAti 424 (778)
T KOG0453|consen 367 --------------KNGWPIKIK-----VGLIGSCTNSSYEDMSRAADI-VKQAKGKGLKP--KVPFYVTPGSEQIRATI 424 (778)
T ss_pred --------------hcCCceeee-----eeEEEeecCccHHHHHHHHHH-HHHHHhcCCCC--CcceEeccChHHhhhhH
Confidence 145666553 589999999999997766655 58888777764 49999999999999999
Q ss_pred HHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCcc-CCceecCHHHHHHHH
Q 008433 152 QNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYA 230 (565)
Q Consensus 152 ~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~-~~~yLaSP~lvaA~A 230 (565)
+|+|+++.|+++|+.+++++||||||+|.+.+ +++||. .+-|+|+||||.||++.+. ...||+||++|+|+|
T Consensus 425 erdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~-ntivts~NRNFtgRnd~np~t~afltSP~iVtA~a 497 (778)
T KOG0453|consen 425 ERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEK-NTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALA 497 (778)
T ss_pred hhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCc-CceeeeecccccccCCCCcchhhcccCHHHHHHHH
Confidence 99999999999999999999999999997632 334554 2348999999999998776 567999999999999
Q ss_pred HhCCccCCCCCCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCC-CCccccCCCc
Q 008433 231 LAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKS 309 (565)
Q Consensus 231 laG~i~~d~~t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~-~~~~~wd~~s 309 (565)
|+|++.|+++||.+. +.+|+.|.|+. |..+|++. +.++| |...++..+.+. ...+..|++|
T Consensus 498 iaG~l~fnp~td~l~-~~dg~~fk~~~--p~g~~lp~---~g~d~------------g~~ty~ap~~~~~~~~v~v~p~s 559 (778)
T KOG0453|consen 498 IAGDLSFNPETDSLT-APDGKAFKLEP--PIGDELPK---KGFDP------------GQDTYQAPPSSSSVVEVDVDPTS 559 (778)
T ss_pred HhccccCCCcccccc-cCCcccccccC--CcCCCCcc---cccCC------------CcccccCCCCCCCcceeecCCcc
Confidence 999999999999984 58999999976 78888763 44554 222222222221 2457778999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhh
Q 008433 310 TYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 389 (565)
Q Consensus 310 t~i~~~P~~~~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~ 389 (565)
.+++.---|+.| ...+++++.||+|+..+|||||||.+| .||+++|+.+.=.|. ..+.
T Consensus 560 ~rlqlLepF~~w-----~gkd~edl~ilikv~gkCttDhIsaaG---------pwlkY~Ghl~nisnn--------~~ig 617 (778)
T KOG0453|consen 560 DRLQLLEPFDKW-----DGKDLEDLKILIKVKGKCTTDHISAAG---------PWLKYRGHLENISNN--------DLIG 617 (778)
T ss_pred cchhhcCCCCcc-----cccccccceEEEEEecccCccccccCC---------cceeccchhhhcccc--------hhhh
Confidence 887542223333 235688899999999999999999998 599999876543322 1111
Q ss_pred cccccccchhccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecc
Q 008433 390 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKS 469 (565)
Q Consensus 390 rg~f~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~S 469 (565)
..|+- +++. ....++.+|+...+.+.++.||+.|++||+|+++|||+||||||||+.||.||+++||.+|
T Consensus 618 --------ain~E-n~e~-n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kS 687 (778)
T KOG0453|consen 618 --------AINKE-NGEA-NCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKS 687 (778)
T ss_pred --------hcchh-hhhh-hhhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchhhcCCcEEEeeh
Confidence 11110 0111 1123345788899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEE--EcCCCeEEEEEeeCC-CHHHHHH
Q 008433 470 FERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRV--VTDSGKSFTCVIRFD-TEVELAY 546 (565)
Q Consensus 470 FarIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v--~~~~g~~~~~~~~~~-t~~e~~~ 546 (565)
|+|||++||+|+|+|||+|.++.+|++|. ..+.+++. + +..+.||+++++ +..+|++++.++.+. +..|++|
T Consensus 688 FarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~--~-L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~ 762 (778)
T KOG0453|consen 688 FARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK--G-LTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEW 762 (778)
T ss_pred hHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh--h-hhhhcCCCceeEEEECCCCcEEEEecccccchhhhHh
Confidence 99999999999999999999999999985 23333332 2 346778887664 456888888888664 8999999
Q ss_pred HHhcCHHHHHHH
Q 008433 547 FDHGGILQYVIR 558 (565)
Q Consensus 547 ~~aGGll~yv~~ 558 (565)
|++|..||++++
T Consensus 763 fkaGsaln~~~e 774 (778)
T KOG0453|consen 763 FKAGSALNVMKE 774 (778)
T ss_pred hhcchHHHHHHH
Confidence 999999998875
No 15
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=2.4e-67 Score=489.84 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=166.7
Q ss_pred ecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCCCc
Q 008433 339 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 418 (565)
Q Consensus 339 ~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~ 418 (565)
+|||+||||||||||+|+++||||+||.++||.++|||||||||||||||+||||+|+|++|+|+++.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccccC
Q 008433 419 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 498 (565)
Q Consensus 419 ~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~ 498 (565)
+++|||+|++|+++++++|||||+|||||||||||||++++|||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEE
Q 008433 499 LTGHERYTID 508 (565)
Q Consensus 499 l~~~e~~~i~ 508 (565)
++++|.++|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999988774
No 16
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=5.3e-54 Score=463.67 Aligned_cols=211 Identities=26% Similarity=0.406 Sum_probs=181.8
Q ss_pred HHHHHHHcCC-------------CCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccC
Q 008433 2 IESYLRANKM-------------FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 68 (565)
Q Consensus 2 v~~yl~~~g~-------------~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~ 68 (565)
+.+||+.+++ |+.+ .+|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++.+++...+.
T Consensus 241 t~~yl~~~~~~~~~~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~- 318 (471)
T PRK12466 241 TFDYLRGRPRAPKGALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPARR- 318 (471)
T ss_pred HHHHHHhCCCchhHHHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchhhh-
Confidence 5678888764 4433 589999999999999999999999999999999999999988876653211
Q ss_pred CCccCccccccccceeecCCCccc--ccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHH
Q 008433 69 KGFAIPKEYQSKVAEFNFHGTPAQ--LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGV 146 (565)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~g~~~~--~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~ 146 (565)
......++||++... +.+..|++||||||||||++||+.||++| ||+||+|||+++|+|||++
T Consensus 319 ---------~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~ 383 (471)
T PRK12466 319 ---------AAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGA 383 (471)
T ss_pred ---------hhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHH
Confidence 111234677776554 56678999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHH
Q 008433 147 VTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 226 (565)
Q Consensus 147 V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lv 226 (565)
|+.+|+++|++++|+++||.|.+||||+|+|+++++.. +|++ +|||+||||+||||+ ...+|||||++|
T Consensus 384 V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~-~~~~yLaSP~~v 452 (471)
T PRK12466 384 VRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLA-------PGER---CASTTNRNFEGRQGP-GARTHLMSPAMV 452 (471)
T ss_pred HHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCC-------CCCE---EEEecCCCCCCCCCC-CCcEEECCHHHH
Confidence 99999999999999999999999999999999977642 4676 699999999999999 445699999999
Q ss_pred HHHHHhCCccCCCCCCCcc
Q 008433 227 VAYALAGSVNIDFETEPVG 245 (565)
Q Consensus 227 aA~AlaG~i~~d~~t~pl~ 245 (565)
|||||+|+| +||..
T Consensus 453 AAsAi~G~I-----~dpr~ 466 (471)
T PRK12466 453 AAAAVAGHI-----TDVRS 466 (471)
T ss_pred HHHHhCcEe-----CCHHH
Confidence 999999999 46754
No 17
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=1.5e-53 Score=460.16 Aligned_cols=209 Identities=23% Similarity=0.348 Sum_probs=177.2
Q ss_pred HHHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccce
Q 008433 4 SYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 83 (565)
Q Consensus 4 ~yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (565)
+|.+++..|+.+ .+|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++++++.++.+ +.....
T Consensus 254 ~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~----------~~~~~~ 322 (466)
T PRK05478 254 DWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVKR----------ASAERA 322 (466)
T ss_pred HHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhhh----------hhhhhh
Confidence 344444455544 589999999999999999999999999999999999999998887764321 111233
Q ss_pred eecCCCcc--cccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHH
Q 008433 84 FNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 161 (565)
Q Consensus 84 ~~~~g~~~--~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~ 161 (565)
++||++.. ++.++.|++||||||||||++||++||++| ||+||+||||++|+|||++|+++|+++|++++|+
T Consensus 323 ~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~ 396 (466)
T PRK05478 323 LAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFI 396 (466)
T ss_pred hhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHH
Confidence 45665432 367788999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCCC
Q 008433 162 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 241 (565)
Q Consensus 162 ~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~t 241 (565)
++||.|.+||||+|+|+++... .+|++ +|+|+||||+||||+.. .+|||||++|||+||+|+| |
T Consensus 397 ~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~I-----t 460 (466)
T PRK05478 397 EAGFEWREPGCSMCLAMNPDKL-------PPGER---CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHF-----V 460 (466)
T ss_pred HcCCEEcCCccccccCcCCCCC-------CCCCE---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCc-----C
Confidence 9999999999999999985543 25786 68999999999999555 5899999999999999999 4
Q ss_pred CCcc
Q 008433 242 EPVG 245 (565)
Q Consensus 242 ~pl~ 245 (565)
||..
T Consensus 461 dpr~ 464 (466)
T PRK05478 461 DVRE 464 (466)
T ss_pred Chhh
Confidence 6753
No 18
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.4e-53 Score=457.94 Aligned_cols=198 Identities=26% Similarity=0.379 Sum_probs=169.9
Q ss_pred CCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCc
Q 008433 11 MFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 90 (565)
Q Consensus 11 ~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 90 (565)
.|+.+ .+|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++........ +.....+++|+++.
T Consensus 261 ~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 329 (465)
T TIGR00170 261 YWKTL-KTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADPVD----------KASAERALAYMGLE 329 (465)
T ss_pred hhhhc-cCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCChhhhcchhh----------hhhhhhhhhhcccc
Confidence 36554 48999999999999999999999999999999999999776654332110 11112345666655
Q ss_pred cc--ccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEe
Q 008433 91 AQ--LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 168 (565)
Q Consensus 91 ~~--~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 168 (565)
.. +.+..|++||||||||||++||+.||++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.
T Consensus 330 ~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~ 403 (465)
T TIGR00170 330 PGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWR 403 (465)
T ss_pred CCcccCCCeEEEEEEecCCCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 43 66788999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 169 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 169 ~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
+||||+|+|+++++.+ ++++ +++|+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 404 ~~gCg~C~G~~~~~~~-------~ge~---~isTsNRNF~GR~G~~~-~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 404 EPGCSMCLGMNNDRLP-------EGER---CASTSNRNFEGRQGRGG-RTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred CCccccccCcCCCCCC-------CCCE---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCceec
Confidence 9999999999988753 4665 58999999999999844 67999999999999999994
No 19
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=1.7e-52 Score=441.79 Aligned_cols=178 Identities=26% Similarity=0.435 Sum_probs=163.6
Q ss_pred HHHHHHHcCC--CCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKM--FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~--~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++|||.+++ |+.+ ++|++|.|+++++||||+|+|+||+|++|+|++||+|+.+ .+|
T Consensus 203 t~~yL~~~~~~~~~~~-~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~--------------~~I------ 261 (382)
T cd01583 203 TFEYLKGRGKAYWKEL-KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG--------------IKI------ 261 (382)
T ss_pred HHHHHHhcCccchhhc-CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCC--------------cce------
Confidence 5799999886 3333 5899999999999999999999999999999999999884 233
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
++||||||||+|++||+.||++| ||+||+|+||++|+|||++|+++|+++|++++
T Consensus 262 -------------------d~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~ 316 (382)
T cd01583 262 -------------------DQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEKEGLIEI 316 (382)
T ss_pred -------------------eEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHH
Confidence 56999999999999999999999 89999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
|+++||.|.+||||+|+|+++.+. .+|++ +|||+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 317 l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 317 FIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred HHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcccC
Confidence 999999999999999999986653 35776 6999999999999999989999999999999999986
No 20
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.6e-52 Score=440.85 Aligned_cols=178 Identities=33% Similarity=0.495 Sum_probs=163.3
Q ss_pred HHHHHHHcCCCCCCC--CCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKMFVDYS--EPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~~~~~~--~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+.+||+.+|+..+|. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+ .+
T Consensus 201 t~~yl~~~gr~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g--------------~~------- 259 (380)
T cd01585 201 TREFLAAQGREDDWVELAADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG--------------IK------- 259 (380)
T ss_pred HHHHHHhcCCchhccccCCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC--------------ce-------
Confidence 579999998643332 6899999999999999999999999999999999999873 22
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
|++||||||||+|++||++||++| ||+||+|+||++|+|||++|+++|+++|++++
T Consensus 260 ------------------Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~ 315 (380)
T cd01585 260 ------------------VDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALAD 315 (380)
T ss_pred ------------------EEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHH
Confidence 357999999999999999999999 89999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
|+++||.|.+||||+|+|+++.+. +|++ +|+|+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 316 l~~aGa~i~~pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 316 LLAAGARILESACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred HHHcCCEEeCCCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCccC
Confidence 999999999999999999987643 4666 6999999999999998889999999999999999986
No 21
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=5.8e-52 Score=436.28 Aligned_cols=168 Identities=76% Similarity=1.178 Sum_probs=160.4
Q ss_pred cEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccCCCeEEEEEe
Q 008433 25 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAIT 104 (565)
Q Consensus 25 ~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~Ig 104 (565)
+++++||||+|+|+||+|++|+|++||.. .|+++|||
T Consensus 237 d~~i~iDls~leP~Va~P~~Pd~v~~v~~-------------------------------------------~Id~v~IG 273 (404)
T cd01586 237 TQVVELDLSTVEPSVSGPKRPQDRVPLHG-------------------------------------------SVVIAAIT 273 (404)
T ss_pred ceEEEEEcccceeeecCCCCcccccCcCC-------------------------------------------cEeEEEEE
Confidence 99999999999999999999999999921 23569999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccccCCCCCCch
Q 008433 105 SCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDD 184 (565)
Q Consensus 105 SCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~ 184 (565)
||||+|++|++.||++|+|||++||+||+|||+++|+|||++|+++|+++|++++|+++||.|++||||+|+|+++++.+
T Consensus 274 SCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~ 353 (404)
T cd01586 274 SCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPE 353 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 185 AVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 185 ~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
.+++.+.+|++++++|||+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 354 ~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 354 EVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred hhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 888889999998889999999999999999999999999999999999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=6e-52 Score=440.44 Aligned_cols=178 Identities=24% Similarity=0.442 Sum_probs=162.5
Q ss_pred HHHHHHHcCCCCCCC--CCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKMFVDYS--EPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~~~~~~--~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++||+.+++. +|. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+ .++
T Consensus 229 t~~yl~~~~~~-~~~~~~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g--------------~~i------ 287 (412)
T TIGR01343 229 TRAYLKERYKE-PFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEG--------------IEV------ 287 (412)
T ss_pred HHHHHHhhCcc-cccccCCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCC--------------Cee------
Confidence 67999998762 332 6899999999999999999999999999999999999873 233
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
++||||||||+|++||++||++| +|+||+|+|+++|+|||++|+++|+++|++++
T Consensus 288 -------------------d~~~IGSCTngr~~Dl~~aA~il------~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~ 342 (412)
T TIGR01343 288 -------------------DQVFIGSCTNGRIEDLRVAAKIL------KGRKVAPDVRLIVIPASRAVYLQALKEGLIEI 342 (412)
T ss_pred -------------------eEEEEecCCCCChHHHHHHHHHH------cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHH
Confidence 46999999999999999999999 89999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCC-CCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 160 LNHLGFHIVGYGCTTCIGNS-GDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~-~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
|+++||.|.+||||+|+|++ +.+. +|++ +|+|+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 343 l~~aG~~i~~pgCg~C~G~~~g~l~--------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 343 FVKAGAVVSTPGCGPCLGRHQGVLA--------PGEV---CISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred HHHcCCEEcCCccccccCcCCCcCC--------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 99999999999999999996 4443 4676 69999999999999988889999999999999999994
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=1.3e-51 Score=438.45 Aligned_cols=179 Identities=25% Similarity=0.428 Sum_probs=161.8
Q ss_pred HHHHHHHcCCCCCC--CCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKMFVDY--SEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~~~~~--~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++||+.++. .+| ..+|++|.|+++++||||+|||+||+|++|+|++||+|+.+ .++
T Consensus 232 t~~yl~~~~~-~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g--------------~~i------ 290 (418)
T PRK00402 232 TLEYLKERAG-RDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEG--------------TKV------ 290 (418)
T ss_pred HHHHHHhhcc-cccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCC--------------cee------
Confidence 5799999864 222 26899999999999999999999999999999999999873 233
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
++||||||||+|++||++||++| ||+||+++|+++|+|||++|+++|+++|++++
T Consensus 291 -------------------d~~~IGSCTngr~eDl~~aA~il------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~ 345 (418)
T PRK00402 291 -------------------DQVFIGSCTNGRLEDLRIAAEIL------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEI 345 (418)
T ss_pred -------------------eEEEEecCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHH
Confidence 46999999999999999999999 89999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 160 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
|+++||.|.+||||+|+|++.... .+|++ +|||+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 346 l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 346 FVDAGAVVSTPTCGPCLGGHMGVL-------APGEV---CLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred HHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 999999999999999999864432 14675 69999999999999988889999999999999999994
No 24
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=2e-51 Score=436.38 Aligned_cols=180 Identities=26% Similarity=0.417 Sum_probs=163.3
Q ss_pred HHHHHHHcCCCC-CCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 2 IESYLRANKMFV-DYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 2 v~~yl~~~g~~~-~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
+++||+.+++.. ....||++|.|+++++||||+|||+||+|++|+|++|++++.+ .++
T Consensus 228 t~~yl~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~--------------~~i------- 286 (412)
T TIGR02086 228 TYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEG--------------TEI------- 286 (412)
T ss_pred HHHHHHhcCCcccccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcc--------------cce-------
Confidence 679999998721 1126999999999999999999999999999999999999873 233
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
++||||||||++++||+.||++| ||+||+|+|+++|+|||++|+++++++|++++|
T Consensus 287 ------------------d~~~IGSCTngr~~Dl~~aA~vL------kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~ 342 (412)
T TIGR02086 287 ------------------DQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEGIILTL 342 (412)
T ss_pred ------------------eEEEEeccCCCChHHHHHHHHHH------cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHH
Confidence 46999999999999999999999 899999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
.++||.|.+||||+|+|++.... .+|++ +|+|+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 343 ~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 343 IRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred HHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 99999999999999999984432 25776 69999999999999988889999999999999999994
No 25
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=5.9e-52 Score=448.98 Aligned_cols=210 Identities=35% Similarity=0.591 Sum_probs=163.4
Q ss_pred HHHHHHHcCCC-------------CCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccC
Q 008433 2 IESYLRANKMF-------------VDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 68 (565)
Q Consensus 2 v~~yl~~~g~~-------------~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~ 68 (565)
+.+||+.+++. +.+ .+|++|.|+++|+||||+|+|+||+|++|+|++||+|+.+++.+++.....
T Consensus 240 t~~Yl~~~~~~~~~~~~~~~~~~~~~l-~~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v~~- 317 (465)
T PF00330_consen 240 TLEYLRGRGRSPEGEELDEAYAKWQGL-KSDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPVER- 317 (465)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHGCS-S--TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH----C-
T ss_pred HHHHHHhhhhhhHHHHHHHhhhhhhhc-cCCCccCeeEEEEEEcCccccccccCCCCcccccccccccccccccccccc-
Confidence 46788877652 222 589999999999999999999999999999999999999998876543211
Q ss_pred CCccCccccccccceeecCCCc--ccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHH
Q 008433 69 KGFAIPKEYQSKVAEFNFHGTP--AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGV 146 (565)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~g~~--~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~ 146 (565)
.....+++|++.. .++.++.|++||||||||||++||++||++|+++|+ ++++++|+++|+|||++
T Consensus 318 ---------~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~ 385 (465)
T PF00330_consen 318 ---------EAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQ 385 (465)
T ss_dssp ---------CGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHH
T ss_pred ---------cccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHH
Confidence 1122356676443 578889999999999999999999999999987766 79999999999999999
Q ss_pred HHHHHHHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhcc-CCeEEeeeeeccccCCCCCCCccCCceecCHHH
Q 008433 147 VTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE-NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 225 (565)
Q Consensus 147 V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~-~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~l 225 (565)
|+++|+++||+++|+++||.|+++|||+|+|+++ +.+ .+.+ +++ +|||+||||+||||+..+.+|||||++
T Consensus 386 v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~----~~~~~~~~---~vst~NRNF~GR~g~~~~~~yLaSP~~ 457 (465)
T PF00330_consen 386 VYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPD----VLAPLGEV---CVSTSNRNFEGRMGPKDATVYLASPAT 457 (465)
T ss_dssp HHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---C----CHCCTTEE---EEESSSS-CTTTTTTTTTEEEE--HHH
T ss_pred HHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCc----ccccccce---EEEecCCCCCCCCCCCcCeEEECCHHH
Confidence 9999999999999999999999999999999995 211 1223 454 799999999999999999999999999
Q ss_pred HHHHHHhC
Q 008433 226 VVAYALAG 233 (565)
Q Consensus 226 vaA~AlaG 233 (565)
|||+||+|
T Consensus 458 vaA~Ai~G 465 (465)
T PF00330_consen 458 VAASAIAG 465 (465)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 99999998
No 26
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=8.2e-51 Score=431.76 Aligned_cols=193 Identities=30% Similarity=0.466 Sum_probs=162.4
Q ss_pred HHHHHHHcCCCC----------CCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCc
Q 008433 2 IESYLRANKMFV----------DYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71 (565)
Q Consensus 2 v~~yl~~~g~~~----------~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~ 71 (565)
+.+||+.+++.. ....+|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 209 t~~yl~~~~~~~~~~~~~~y~~~~l~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~----------- 277 (412)
T cd01584 209 MKKYLKATGRAEIADLADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK----------- 277 (412)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcccCCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc-----------
Confidence 679999988742 22268999999999999999999999999999999999999864321
Q ss_pred cCccccccccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHH
Q 008433 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYL 151 (565)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l 151 (565)
.|++ -.|++||||||||||++||..|| .++|+|+++|+|++ ||++|+|||++|+++|
T Consensus 278 ---------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~ 334 (412)
T cd01584 278 ---------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATI 334 (412)
T ss_pred ---------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHH
Confidence 0111 14578999999999999966555 66799999999998 8999999999999999
Q ss_pred HHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCC-CCccCCceecCHHHHHHHH
Q 008433 152 QNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYA 230 (565)
Q Consensus 152 ~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~-g~~~~~~yLaSP~lvaA~A 230 (565)
+++||+++|+++||.|.+||||+|+|++++. .+.+++.. ++|||+||||+||| |+....+|||||++|||||
T Consensus 335 ~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~------~~~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsA 407 (412)
T cd01584 335 ERDGLLQTFRDAGGIVLANACGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMA 407 (412)
T ss_pred HHCCcHHHHHHcCCEEcCCcccccccCCCCc------ccCCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHH
Confidence 9999999999999999999999999998751 11234432 47999999999999 4545679999999999999
Q ss_pred HhCCc
Q 008433 231 LAGSV 235 (565)
Q Consensus 231 laG~i 235 (565)
|+|++
T Consensus 408 i~G~~ 412 (412)
T cd01584 408 IAGTL 412 (412)
T ss_pred hcccC
Confidence 99985
No 27
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.2e-50 Score=430.41 Aligned_cols=180 Identities=27% Similarity=0.409 Sum_probs=161.5
Q ss_pred HHHHHHHcCC--CCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccc
Q 008433 2 IESYLRANKM--FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 79 (565)
Q Consensus 2 v~~yl~~~g~--~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (565)
+++||+.++. |..+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+... |.++
T Consensus 232 t~~yL~~r~~~~~~~~-~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~------------g~~i------ 292 (419)
T TIGR02083 232 TIEYEKGRGKREEKIY-KADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKE------------EIKI------ 292 (419)
T ss_pred HHHHHhhCCccchhcc-cCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccc------------cCcc------
Confidence 5799998764 2222 68999999999999999999999999999999999998721 2233
Q ss_pred ccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHH
Q 008433 80 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 159 (565)
Q Consensus 80 ~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~ 159 (565)
++||||||||++++||++||++| ||+||+++|+++|+|||++|+.+++++|++++
T Consensus 293 -------------------d~v~IGSCTngr~eDl~~AA~iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~ 347 (419)
T TIGR02083 293 -------------------DQVVIGSCTNGRLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEI 347 (419)
T ss_pred -------------------CeEEEEcCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 45999999999999999999999 89999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCC-CCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 160 LNHLGFHIVGYGCTTCIGNS-GDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 160 l~~aG~~i~~~gCg~CiG~~-~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
|.++||.|.++|||+|+|++ |.+. +|++ +|||+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 348 l~~aGa~i~~pgCg~C~G~~~g~l~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 348 FIEAGAVVSTPTCGPCLGGHMGILA--------EGER---AISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred HHHcCCEEcCCccccccCcCCCcCC--------CCCE---EEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 99999999999999999987 5443 4665 69999999999999777889999999999999999994
No 28
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-50 Score=415.48 Aligned_cols=181 Identities=28% Similarity=0.471 Sum_probs=161.8
Q ss_pred HHHHHHHcC----CCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccc
Q 008433 2 IESYLRANK----MFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEY 77 (565)
Q Consensus 2 v~~yl~~~g----~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~ 77 (565)
+.+|+|... .|+.+ ++|++|.|+++|+||+|+|+|+||||++|+|+++|+|+.+++ +
T Consensus 233 T~~Y~k~~~~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~------------i------ 293 (423)
T COG0065 233 TFEYLKEWDGAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDP------------I------ 293 (423)
T ss_pred HHHHHHHHhcccccccee-cCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCc------------e------
Confidence 457888432 25544 589999999999999999999999999999999999988521 1
Q ss_pred ccccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChH
Q 008433 78 QSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQ 157 (565)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~ 157 (565)
.|+++|||||||+|++||++||++| ||+||+++||+.|+|||+.|+++++++||+
T Consensus 294 -------------------~iDqVFIGSCTNgRieDLr~AA~Il------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~ 348 (423)
T COG0065 294 -------------------KIDQVFIGSCTNGRIEDLRAAAEIL------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLD 348 (423)
T ss_pred -------------------eeceEEEeccCCccHHHHHHHHHHh------ccCccCCCceEEEecCcHHHHHHHHHccHH
Confidence 2356999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 158 KYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 158 ~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
++|.+|||.|+.||||||+|++.... .+|++ |+||+||||+||||+..+.+||+||+++||+|+.|+|.
T Consensus 349 ~if~~AG~~~~~pgCg~CLg~~~gvL-------~~gE~---c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 349 KIFIEAGFEWREPGCGPCLGMHPGVL-------GPGER---CASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred HHHHhcCcEEcCCCCccccccCCCcC-------CCCCE---EeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 99999999999999999999985443 36787 68999999999999878889999999999999999994
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=2e-47 Score=407.48 Aligned_cols=160 Identities=26% Similarity=0.419 Sum_probs=147.1
Q ss_pred CCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccC
Q 008433 17 EPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRH 95 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~v-eP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (565)
.||++|.|+++++||||+| ||+||+|++|+|++|++|+.+ .++
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g--------------~~i---------------------- 319 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG--------------KKI---------------------- 319 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------Ccc----------------------
Confidence 5899999999999999999 999999999999999999873 333
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccc
Q 008433 96 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTC 175 (565)
Q Consensus 96 g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~C 175 (565)
+++||||||| +++||+.||.+| ||+++ +.|+++|+|||++|+++|+++|++++|+++||.|.+||||+|
T Consensus 320 ---d~~~IGSCTn-r~eDl~~AA~il------kg~~~-~~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 320 ---DEVFIGSCMT-NIGHFRAAAKIL------RGKEF-KPTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred ---ceEEEecCCC-CHHHHHHHHHHH------cCCCC-CCCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 3589999999 999999999998 89996 459999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
+|+++.+. +|++ +|||+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 389 ~G~~~~~~--------~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARVA--------DGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcCC--------CCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 99966543 5777 699999999999999 668899999999999999986
No 30
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=6.1e-47 Score=395.66 Aligned_cols=164 Identities=30% Similarity=0.471 Sum_probs=145.0
Q ss_pred cEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccCCCeEEEEEe
Q 008433 25 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAIT 104 (565)
Q Consensus 25 ~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~Ig 104 (565)
+++++||||+|||+||+|++|+|++|++++... +.+ |++||||
T Consensus 199 ~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~~~-------------------------id~~~IG 241 (363)
T cd01582 199 AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------NIK-------------------------INKAYLV 241 (363)
T ss_pred ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------Cce-------------------------EeEEEEE
Confidence 899999999999999999999999999998521 222 3469999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcC-CccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccccCCCCCCc
Q 008433 105 SCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 183 (565)
Q Consensus 105 SCTN~s~~dl~~aA~llak~A~~~G-~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~ 183 (565)
||||+|++||+.||++|+.+..++| ++|+||||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++.
T Consensus 242 SCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~ 321 (363)
T cd01582 242 SCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLL 321 (363)
T ss_pred cCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCC
Confidence 9999999999999999943322222 339999999999999999999999999999999999999999999999997764
Q ss_pred hHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 184 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 184 ~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
. ++++ +|||+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 322 ~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 322 E-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAASAISGKI 363 (363)
T ss_pred C-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCccC
Confidence 2 4676 5999999999999998899999999999999999986
No 31
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.1e-45 Score=392.91 Aligned_cols=179 Identities=33% Similarity=0.536 Sum_probs=162.7
Q ss_pred HHHHHHHcCCCC-------CC--CCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCcc
Q 008433 2 IESYLRANKMFV-------DY--SEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFA 72 (565)
Q Consensus 2 v~~yl~~~g~~~-------~~--~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~ 72 (565)
+.+||+.+++.. .| ..||++|.|+++++|||++|+|+||+|++|+|++||+++.+ .
T Consensus 202 t~~yl~~~~~~~~~~~~~~~~~~l~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------~- 266 (389)
T cd01351 202 TLKWLEATGRPLLKNLWLAFPEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------T- 266 (389)
T ss_pred HHHHHHhcCCchhhHHHHHHHhccCCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC--------------C-
Confidence 578999988642 22 26899999999999999999999999999999999999873 1
Q ss_pred CccccccccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHH
Q 008433 73 IPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQ 152 (565)
Q Consensus 73 ~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~ 152 (565)
.|+++|||||||+|++||+.||.+| ||++|+++|+++|+|||++|+++++
T Consensus 267 ------------------------~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~ 316 (389)
T cd01351 267 ------------------------KIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLS 316 (389)
T ss_pred ------------------------ceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHH
Confidence 2457999999999999999999999 8999999999999999999999999
Q ss_pred HcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHh
Q 008433 153 NSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALA 232 (565)
Q Consensus 153 ~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~Ala 232 (565)
++|++++|+++||.|..+||++|+|+++.+.. +|++ +|+|+||||+||||+..+.+|||||++|||+||+
T Consensus 317 ~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~ 386 (389)
T cd01351 317 REGYYEILVDSGARILPPGCGPCMGNGARLVA-------DGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAATAIA 386 (389)
T ss_pred HcChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCcE---EEEeecCCCccccCCCCCceEECCHHHHHHHHhc
Confidence 99999999999999999999999999977642 4665 6999999999999999889999999999999999
Q ss_pred CCc
Q 008433 233 GSV 235 (565)
Q Consensus 233 G~i 235 (565)
|+|
T Consensus 387 G~i 389 (389)
T cd01351 387 GKI 389 (389)
T ss_pred CcC
Confidence 986
No 32
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.4e-44 Score=406.01 Aligned_cols=162 Identities=25% Similarity=0.386 Sum_probs=149.9
Q ss_pred CCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccC
Q 008433 17 EPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRH 95 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~v-eP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (565)
.||++|.|+++|+||||+| ||+||+|++|||++||+|+.+ .++
T Consensus 648 ~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g--------------~~I---------------------- 691 (835)
T PRK09238 648 EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAG--------------TKI---------------------- 691 (835)
T ss_pred cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcC--------------Ccc----------------------
Confidence 5899999999999999999 999999999999999999873 233
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccc
Q 008433 96 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTC 175 (565)
Q Consensus 96 g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~C 175 (565)
+++|||||| |+++|++.||.+| ||+++++.|+++|+|||+.|+.+|+++|++++|.++||+|..||||+|
T Consensus 692 ---d~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg~C 761 (835)
T PRK09238 692 ---DEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCSLC 761 (835)
T ss_pred ---CeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcchhh
Confidence 358999999 9999999999998 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
+||.+.+. +|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|.
T Consensus 762 ~G~~~~~~--------~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 762 MGNQARVA--------DGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred hCccCcCC--------CCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 99976553 6776 699999999999997 6678999999999999999993
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=5.3e-44 Score=399.33 Aligned_cols=162 Identities=24% Similarity=0.367 Sum_probs=150.1
Q ss_pred CCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccC
Q 008433 17 EPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRH 95 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~v-eP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (565)
.+|++|.|+++||||||+| ||+||+|++|||++||+|+.+ .+|
T Consensus 722 ~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~kI---------------------- 765 (938)
T PLN00094 722 EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------DKI---------------------- 765 (938)
T ss_pred cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------Ccc----------------------
Confidence 5899999999999999999 999999999999999999873 333
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccc
Q 008433 96 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTC 175 (565)
Q Consensus 96 g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~C 175 (565)
+++|||||| ++++|++.||.+| +|+++++.|+++|+|||+.|+.+|+++|++++|.++||+|..||||+|
T Consensus 766 ---DqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg~C 835 (938)
T PLN00094 766 ---DEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCSLC 835 (938)
T ss_pred ---CeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccccc
Confidence 358999999 7999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
+||++.+. +|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|.
T Consensus 836 mG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 836 MGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred cCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 99977664 5676 699999999999998 6689999999999999999994
No 34
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=6.6e-44 Score=399.41 Aligned_cols=161 Identities=24% Similarity=0.409 Sum_probs=147.6
Q ss_pred CCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccC
Q 008433 17 EPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRH 95 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~v-eP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (565)
.+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+ .++
T Consensus 649 ~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g--------------~~I---------------------- 692 (844)
T TIGR00117 649 EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQG--------------DKI---------------------- 692 (844)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcC--------------ccc----------------------
Confidence 5899999999999999999 999999999999999999973 233
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccc
Q 008433 96 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTC 175 (565)
Q Consensus 96 g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~C 175 (565)
+++|||||| |+++|++.||.+| ||+++.+ |+++|+|||++|+++|+++|++++|.++||+|..||||+|
T Consensus 693 ---dqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGCg~C 761 (844)
T TIGR00117 693 ---DEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCSLC 761 (844)
T ss_pred ---ceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCccccc
Confidence 348999999 8999999999998 8999988 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCcc
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 236 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~ 236 (565)
+||.+.+. +|++ +|||+||||+||||+ ...+|||||++|||+||+|+|.
T Consensus 762 ~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 762 MGNQARVA--------DGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred cCCCCcCC--------CCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCcccC
Confidence 99976654 5665 689999999999998 5579999999999999999993
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-43 Score=364.36 Aligned_cols=380 Identities=23% Similarity=0.265 Sum_probs=253.4
Q ss_pred HHHHcCCCCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCcccccccccee
Q 008433 5 YLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEF 84 (565)
Q Consensus 5 yl~~~g~~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 84 (565)
|-++..+|... .||+.+.|+..++|..-++.|.+.|..+||++.|+.--.++....-+ +|- .....+.|
T Consensus 14 we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i~--a~~~ersL 82 (502)
T KOG0454|consen 14 WESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KIL--ARASERSL 82 (502)
T ss_pred hhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HHH--Hhhhhhce
Confidence 33444556554 48999999999999999999999999999999999876554221100 110 01113467
Q ss_pred ecCCCcccccCCCe--EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCee-EEEEcCCHHHHHHHHHcChHHHHH
Q 008433 85 NFHGTPAQLRHGDV--VIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYLN 161 (565)
Q Consensus 85 ~~~g~~~~~~~g~v--~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk-~~v~PgS~~V~~~l~~~Gl~~~l~ 161 (565)
.|||+.....-..+ +-+|||||||.+.+||+.+|+++ +|.|+.-.+| .+++|||+.|....+.+||.++|.
T Consensus 83 ~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ 156 (502)
T KOG0454|consen 83 VYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFN 156 (502)
T ss_pred eeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHH
Confidence 89998876654443 45899999999999999999999 8999987777 568999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccC--CC
Q 008433 162 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNI--DF 239 (565)
Q Consensus 162 ~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~--d~ 239 (565)
.+||.|+..||..|.||........ ++ |-+|+|||||||+|.+.+. +||||.+.+|..+.|+... .+
T Consensus 157 eagF~wreagcs~clgmnpd~l~~y-------er---castsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~~~~~~ 225 (502)
T KOG0454|consen 157 EAGFYWREAGCSFCLGMNPDGLCHY-------ER---CASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDLGFREF 225 (502)
T ss_pred hhceehhhccccccccCCchhccHH-------HH---hhhccCCCccccccccccc-hhhhhhHHhhccccccccccccc
Confidence 9999999999999999974433222 34 5799999999999999987 8999999999999998851 11
Q ss_pred C-CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccC-CCccc--ccCC
Q 008433 240 E-TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWD-PKSTY--IHEP 315 (565)
Q Consensus 240 ~-t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd-~~st~--i~~~ 315 (565)
. ++-+..-+. ..+.|++--|+ -+++ .+ .... + +++. ....+.+.-+ ..|+. +-++
T Consensus 226 ~~k~~~~~~Ps-~~l~~~g~s~s--v~~~-----~~--li~~----i--a~ds-----~t~i~~~at~e~~s~~sSl~m~ 284 (502)
T KOG0454|consen 226 TGKDSLKVSPS-PFLTLKGESPS--VLPA-----KD--LIVS----I--ATDS-----STDIPRVATMEFSSTTSSLGME 284 (502)
T ss_pred cccccccCCCC-ceEEeCCCCcc--cccc-----cc--chhh----h--hccc-----cccccceecccCCCccccccCc
Confidence 0 111111000 00112110000 0000 00 0000 0 0000 0000001000 01111 1111
Q ss_pred CCCCCCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccc
Q 008433 316 PYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFAN 395 (565)
Q Consensus 316 P~~~~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n 395 (565)
+| .-+.-.+.|||+||.|+|+ +||+.- ... -..+++|..
T Consensus 285 ~F----------------~tLc~vv~dNiDTD~IIP~----------qfltli--~~~-------------~~~~~~f~~ 323 (502)
T KOG0454|consen 285 TF----------------HTLCGVVADNIDTDQIIPA----------QFLTLI--PST-------------GLILSCFYE 323 (502)
T ss_pred ce----------------eeeehhhhhhCCcCcccCh----------hhhccc--ccc-------------hhhhhhhhh
Confidence 11 1133455699999999999 677752 111 234567777
Q ss_pred cchhccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHh
Q 008433 396 IRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHR 475 (565)
Q Consensus 396 ~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~ 475 (565)
+++.- . |. +-...++++. +.|+. -.|+|+|+|||||||||||.|++.+.|+++|||+||+|||+
T Consensus 324 ~~~dg-----~--~k-----~~~~dFv~~v-E~~~~---~siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFf 387 (502)
T KOG0454|consen 324 VALDG-----L--PK-----SFVTDFVLPV-EPLRK---YSIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFF 387 (502)
T ss_pred heecC-----C--ch-----hhccceeccc-cccce---eEEEeccCCcccccccccCcchhhhcccceecchhHHHHHH
Confidence 66431 0 10 0011223322 33432 57999999999999999999999999999999999999999
Q ss_pred hhhccCCccceecCC
Q 008433 476 SNLVGMGIIPLCFKP 490 (565)
Q Consensus 476 ~Nlin~GiLPL~f~~ 490 (565)
+|++..|.||..-+.
T Consensus 388 rN~~atG~l~~~~s~ 402 (502)
T KOG0454|consen 388 RNSVATGELPPLPSE 402 (502)
T ss_pred HhHHhcCCccCCCce
Confidence 999999999875443
No 36
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.3e-42 Score=319.73 Aligned_cols=141 Identities=35% Similarity=0.479 Sum_probs=125.5
Q ss_pred ecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCCCc
Q 008433 339 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 418 (565)
Q Consensus 339 ~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~ 418 (565)
|+.+|||||||||||+ ||++ |||.+.+++++|.. ..|.+.+ +.+ ..+|.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~~--a~n~~~~-~~~-~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLIG--AINAENG-KAN-SVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhhh--hhhhhcc-ccc-cccccCCCc
Confidence 5678999999999995 7775 78999999999976 5677644 443 567889999
Q ss_pred cchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccccC
Q 008433 419 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 498 (565)
Q Consensus 419 ~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~ 498 (565)
.++++++|++|++.|.++|||||+||||||||||||+++++|||+||||+||+|||++||+|+|||||+|.++++|+.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCeEEEEE
Q 008433 499 LTGHERYTID 508 (565)
Q Consensus 499 l~~~e~~~i~ 508 (565)
.+++.++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 356666664
No 37
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=4.5e-39 Score=304.67 Aligned_cols=156 Identities=30% Similarity=0.513 Sum_probs=128.9
Q ss_pred EeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCC
Q 008433 337 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 416 (565)
Q Consensus 337 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~ 416 (565)
++++||||+||||+|+ +||+. .+.+.|.+++|.++| |
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------p------- 40 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------P------- 40 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------c-------
Confidence 4899999999999999 88864 467889999999865 1
Q ss_pred CccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccc
Q 008433 417 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496 (565)
Q Consensus 417 g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~ 496 (565)
+++.+.+ .+.|||||+|||||||||||||+++++|++||||+||+|||++||+|+||||+++++ +|+.
T Consensus 41 -------~f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 41 -------EFAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred -------chHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 2233444 368999999999999999999999999999999999999999999999999999964 3776
Q ss_pred cCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHh
Q 008433 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 497 l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~ 560 (565)
+ ..++.++|++.+ + .|++ ..+|+++.+.. + ++.+++++++||++||++++.
T Consensus 109 l--~~gd~i~idl~~-------~-~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 I--EDGDEVEVDLET-------G-VITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred c--CCCCEEEEECCC-------C-EEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhc
Confidence 5 467788888753 2 3433 23478888862 3 899999999999999999874
No 38
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=9.5e-39 Score=299.75 Aligned_cols=154 Identities=30% Similarity=0.533 Sum_probs=125.3
Q ss_pred EeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCC
Q 008433 337 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 416 (565)
Q Consensus 337 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~ 416 (565)
++++||||+||||+|+ +||. ++|.+.|.+++|.+++ |
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~---------------~~~~~~l~~~~f~~~~-----------p------- 39 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLN---------------TSDPKELAKHCMEDLD-----------K------- 39 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcC---------------cCCHHHHHhhhhccCC-----------h-------
Confidence 4899999999999999 7875 3578899999999864 1
Q ss_pred CccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccc
Q 008433 417 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496 (565)
Q Consensus 417 g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~ 496 (565)
+++.+++ .+.|||||+|||||||||||+|+++++||+||||+||+|||++||+|+|| |+.. .++.++.
T Consensus 40 -------~f~~~~~---~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~-~~~~~~~ 107 (156)
T TIGR02084 40 -------DFVKKVK---EGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVE-SEEAVDE 107 (156)
T ss_pred -------hHHhhcC---CCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-Ceec-CHHHHHH
Confidence 2344554 36899999999999999999999999999999999999999999999996 6653 3556776
Q ss_pred cCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHH
Q 008433 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 558 (565)
Q Consensus 497 l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~ 558 (565)
+. .++.++|++++ + +|+. ..+|+++.+.. + ++.+++++++|||++|+++
T Consensus 108 l~--~gd~i~idl~~-------~-~v~~-~~~g~~~~~~~-~-~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 IE--EGDEVEVDLEK-------G-IIKN-LTKGKEYKATP-F-PEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred hC--CCCEEEEECCC-------C-EEEE-ecCCEEEEeec-C-CHHHHHHHHcCCHHHHhhC
Confidence 63 56778888853 2 3332 24578888883 3 8999999999999999874
No 39
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=300.76 Aligned_cols=155 Identities=32% Similarity=0.513 Sum_probs=128.5
Q ss_pred EeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCC
Q 008433 337 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 416 (565)
Q Consensus 337 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~ 416 (565)
++++||||+||+|+|+ +||+. +.+.+.|.+++|.++| |
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~--------------~~~~~~l~~~~f~~~~-----------p------- 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPF--------------MVGEDRFHNYAFAHLR-----------P------- 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhcc--------------CCCHHHHHhhhccCCC-----------h-------
Confidence 4899999999999999 89875 3467889999998854 1
Q ss_pred CccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccc
Q 008433 417 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496 (565)
Q Consensus 417 g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~ 496 (565)
+++.+|+ .+.|||||+|||||||||||+|+++++|++||||+||+|||++|++|+||||++. +++++.
T Consensus 42 -------~f~~~~~---~g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVR---PGDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcC---CCCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 3345665 3689999999999999999999999999999999999999999999999999874 456776
Q ss_pred cCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHh
Q 008433 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 497 l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~ 560 (565)
+. .++.++|++.+ +.++ . +|+++.+.. .++.+++++++|||++|++++-
T Consensus 110 l~--~gd~i~vDl~~--------~~v~--~-~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~ 158 (166)
T PRK14023 110 LE--DGDEVELDLET--------GVLT--R-GGETFQLRP--PPEFLLEALKEGSILEYYRKHG 158 (166)
T ss_pred hC--CCCEEEEECCC--------CEEE--E-CCEEEEEee--CCHHHHHHHHcCCHHHHHHHhC
Confidence 53 56778888753 2333 2 577788876 4899999999999999999864
No 40
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=3.4e-38 Score=295.62 Aligned_cols=152 Identities=31% Similarity=0.533 Sum_probs=122.9
Q ss_pred EeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCC
Q 008433 337 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 416 (565)
Q Consensus 337 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~ 416 (565)
++++||||+||||+|+ +||+. .+.+.|.+++|.+++ |
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-----------p------- 39 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-----------P------- 39 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC-----------c-------
Confidence 4889999999999999 89864 367889999999864 2
Q ss_pred CccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccc
Q 008433 417 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496 (565)
Q Consensus 417 g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~ 496 (565)
+++.+.+. +.|||||+|||||||||||+|+++.+|++||||+||+|||++||+|+||+|+++++ +.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 40 -------EFAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred -------hhhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 23334332 58999999999999999999999999999999999999999999999998887764 22
Q ss_pred cCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHH
Q 008433 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 559 (565)
Q Consensus 497 l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~ 559 (565)
+ ..++.++|++.. ++|+ ..+|+++.+.. + ++.+++++++||++||++++
T Consensus 106 i--~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~-l-~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 I--KDGDEVTVDLET--------GEIR--VNGNEEYKGEP-L-PDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred C--CCCCEEEEECCC--------CEEE--ECCCeEEEEeC-C-CHHHHHHHHcCCHHHHHhcC
Confidence 3 356678888753 2343 34567787742 3 89999999999999999864
No 41
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1e-36 Score=301.99 Aligned_cols=168 Identities=27% Similarity=0.391 Sum_probs=127.8
Q ss_pred CCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCc---hhhhhcccccccc--hhcccc
Q 008433 329 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGN---DEIMARGTFANIR--LVNKLL 403 (565)
Q Consensus 329 ~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N---~evm~rg~f~n~r--~~n~~~ 403 (565)
..+ ..|| +++||||+||||+|+ +||+. +++| .+.|.+++|..++ ...+++
T Consensus 67 ~~~-~Grv-~k~gDNIdTD~IiPa----------~~l~~-------------~~sn~~~~~~l~~~~F~~l~~~~~~r~v 121 (246)
T PLN00072 67 TTF-HGLC-FVVGDNIDTDQIIPA----------EYLTL-------------VPSKPDEYEKLGSYALIGLPAFYKTRFV 121 (246)
T ss_pred CeE-EEeE-EEeCCCcchhhcccH----------HHhcc-------------ccccCCCHHHHHHhhhccCCcchhhccc
Confidence 345 4566 899999999999999 78875 2454 7899999998864 111111
Q ss_pred CCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCC-
Q 008433 404 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG- 482 (565)
Q Consensus 404 ~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~G- 482 (565)
..|+. + . ...|||||+|||||||||||+|+++++||+||||+||+|||++|++|+|
T Consensus 122 -----------~~Gd~----------~-~-~~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GL 178 (246)
T PLN00072 122 -----------EPGEM----------K-T-KYSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGE 178 (246)
T ss_pred -----------CCCCC----------C-C-CceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCc
Confidence 01110 0 1 1479999999999999999999999999999999999999999999999
Q ss_pred ccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHH
Q 008433 483 IIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 559 (565)
Q Consensus 483 iLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~ 559 (565)
|||++. +.+.|+.+. .++.++|++.+ +.|+. ..+|++|.++.. +.+++++++|||++|++++
T Consensus 179 llpi~~-~~~~~e~i~--~Gd~i~VDl~~--------~~v~n-~t~g~~~~~~p~---~~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 179 VYPLES-EVRICEECK--TGDVVTVELGN--------SVLIN-HTTGKEYKLKPI---GDAGPVIDAGGIFAYARKT 240 (246)
T ss_pred ceeecc-cHHHHHhcC--CCCEEEEECCC--------CEEEE-CCCCeEEEecCC---HHHHHHHHcCCHHHHHHhh
Confidence 789884 445566653 56778888743 23322 346888888763 3499999999999999986
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=287.16 Aligned_cols=166 Identities=25% Similarity=0.427 Sum_probs=127.2
Q ss_pred EEeecC-CCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceecc
Q 008433 336 CLLNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 414 (565)
Q Consensus 336 vl~~~g-D~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~ 414 (565)
..++++ |||+||+|+|+ +||+. +++.+| .+++|.++|+.. |
T Consensus 10 ~~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------P----- 51 (191)
T COG0066 10 RVWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------P----- 51 (191)
T ss_pred eEEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------c-----
Confidence 447788 99999999999 99986 445555 789999988531 2
Q ss_pred CCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccc
Q 008433 415 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 494 (565)
Q Consensus 415 p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~ 494 (565)
.++.+. ++|+ .++|||||+|||||||||||+||++.+|++||||+||||||++|++|+||||+...+++--
T Consensus 52 -----dF~~n~-~~yq---~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~ 122 (191)
T COG0066 52 -----DFVLNV-PPYQ---GGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVT 122 (191)
T ss_pred -----chhhcC-CccC---CccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHH
Confidence 112121 4555 3799999999999999999999999999999999999999999999999999998765322
Q ss_pred cccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhc----CHHHHHHHHhh
Q 008433 495 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 561 (565)
Q Consensus 495 ~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aG----Gll~yv~~~~~ 561 (565)
+.+....++.++|+++. + +|+..++.++.+.+ ++.-++++.+| ||+.|.++++.
T Consensus 123 ~l~~~~~g~~i~VDL~~--------~--~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 123 ELFEDVPGDEVTVDLET--------G--EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHHhCCCCEEEEEcCC--------C--eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 22322246778898864 2 34434444555544 79999999999 99999998763
No 43
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=8.1e-36 Score=271.85 Aligned_cols=128 Identities=43% Similarity=0.559 Sum_probs=116.1
Q ss_pred hHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecC
Q 008433 363 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 442 (565)
Q Consensus 363 ~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~ 442 (565)
+||+.+|+..+++++|+++|.||++|.+++|.+.++.|.+..+...+.+.+.|+++.+++++.+.+|+.++.+.||+||+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 68889999999999999999999999999999999999999877777888999999999999999999888787888889
Q ss_pred CcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCC
Q 008433 443 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 490 (565)
Q Consensus 443 nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~ 490 (565)
|||||||||||||+++++||+||||+||+|||++||+|+|||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 44
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=100.00 E-value=9.6e-35 Score=262.18 Aligned_cols=120 Identities=44% Similarity=0.694 Sum_probs=97.5
Q ss_pred ecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCCCc
Q 008433 339 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 418 (565)
Q Consensus 339 ~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~ 418 (565)
++|||||||||+|++. +||.+ |++.+.|.+++|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------p--------- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------P--------- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------c---------
Confidence 5899999999999964 45554 5788899999998742 1
Q ss_pred cchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccccC
Q 008433 419 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 498 (565)
Q Consensus 419 ~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~ 498 (565)
+++.+++. +...|||||+|||||||||||+|+++.+|++||||+||+|||++|++|+|||||++++++.|+.+
T Consensus 39 -----~f~~~~~~-~~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~~- 111 (121)
T cd01579 39 -----TFAERAKA-AGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDRF- 111 (121)
T ss_pred -----hHHhhccc-CCCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhhc-
Confidence 22344443 22469999999999999999999999999999999999999999999999999999887777754
Q ss_pred CCCCeEEEEE
Q 008433 499 LTGHERYTID 508 (565)
Q Consensus 499 l~~~e~~~i~ 508 (565)
..++.++|+
T Consensus 112 -~~gd~i~id 120 (121)
T cd01579 112 -EQGDQLELP 120 (121)
T ss_pred -CCCCEEEcC
Confidence 345555554
No 45
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=1.7e-32 Score=264.31 Aligned_cols=163 Identities=25% Similarity=0.359 Sum_probs=122.3
Q ss_pred cceEEeec-CCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCC-ccCCc
Q 008433 333 GAYCLLNF-GDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG-EVGPK 410 (565)
Q Consensus 333 ~~~vl~~~-gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~-~~g~~ 410 (565)
..++ +++ ||||+||+|+|+ +||+. ...+.|.+++|.++|+.+. .| ...|
T Consensus 8 ~G~~-~~l~~dnIDTD~IiP~----------rfl~~---------------~~~~~l~~~~f~~~R~~~~--~g~~~~p- 58 (188)
T TIGR00171 8 TGLV-APLDAANVDTDAIIPK----------QFLKR---------------ITRTGFGKHLFFDWRFLDA--NGKEPNP- 58 (188)
T ss_pred EEEE-EECCCCcCcHhhhhHH----------HHhCc---------------CCHHHHHHhcccccccccc--ccCCCCc-
Confidence 4455 555 899999999999 89975 2356789999999986321 11 1112
Q ss_pred eeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCC
Q 008433 411 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 490 (565)
Q Consensus 411 t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~ 490 (565)
.++++. ..|+ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+||||++++.
T Consensus 59 ---------~F~ln~-~~~~---~~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~ 125 (188)
T TIGR00171 59 ---------DFVLNQ-PQYQ---GASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSY 125 (188)
T ss_pred ---------chhhcc-cccC---CCcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCH
Confidence 123332 4555 378999999999999999999999999999999999999999999999999999986
Q ss_pred Ccccccc--CCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhc
Q 008433 491 GEDAETH--GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 491 ~~~~~~l--~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aG 550 (565)
++-++.+ ....++.++|++.. ++| +..+|+++.+++ ++..++.|..|
T Consensus 126 ~~i~~~~~~~~~~g~~i~vDl~~--------~~v--~~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 126 DEVKELFGQVENQGLQMTVDLEN--------QLI--HDSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHHHHHhhCCCCEEEEECCC--------CEE--EeCCCeEEEEEe---CHHHHHHHHcC
Confidence 4333321 12566788998853 334 334577788884 78888888888
No 46
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.97 E-value=2.1e-32 Score=266.25 Aligned_cols=161 Identities=27% Similarity=0.415 Sum_probs=122.0
Q ss_pred cceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCcee
Q 008433 333 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 412 (565)
Q Consensus 333 ~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~ 412 (565)
..+++...||||+||+|+|+ +||+. ...+.|.+++|.++|+... +..+|
T Consensus 8 ~G~~~~l~~dnIDTD~IiPa----------~fl~~---------------~~~~~l~~~~f~~~r~~~~---~~~~p--- 56 (200)
T PRK01641 8 TGLAVPLDRANVDTDQIIPK----------QFLKR---------------ITRTGFGKGLFDDWRYLDD---GQPNP--- 56 (200)
T ss_pred EEEEEEcCCCCCChhhcchH----------hHcCc---------------CCHHHHHHhhhcccccccc---CCCCC---
Confidence 35666666999999999999 88864 2356789999999886421 12222
Q ss_pred ccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCc
Q 008433 413 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 492 (565)
Q Consensus 413 ~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~ 492 (565)
.++++ +..|+ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+||||+++++.
T Consensus 57 -------~F~ln-~~~~~---~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~- 124 (200)
T PRK01641 57 -------DFVLN-QPRYQ---GASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEE- 124 (200)
T ss_pred -------Ccccc-ccccC---CCeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHH-
Confidence 12222 24555 3789999999999999999999999999999999999999999999999999999743
Q ss_pred cccccC--C--CCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhc
Q 008433 493 DAETHG--L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 493 ~~~~l~--l--~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aG 550 (565)
+++.|. + ..++.++||+.+ +.| +. .|+++.+.+ ++..++++.+|
T Consensus 125 ~i~~l~~~~~~~~g~~i~vDl~~--------~~v--~~-~~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 125 DVDELFKLVEANPGAELTVDLEA--------QTV--TA-PDKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCC--------CEE--ec-CCeEEEEEc---CHHHHHHHHcC
Confidence 333331 2 456778888853 233 32 367788874 78999999998
No 47
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.96 E-value=1.7e-30 Score=221.17 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=63.6
Q ss_pred eEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccccCCCCCeEEEEE
Q 008433 436 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 508 (565)
Q Consensus 436 ~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~ 508 (565)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++..+|+++ ..++.++|+
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 69999999999999999999999999999999999999999999999999999988777765 345554543
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.96 E-value=3e-30 Score=221.09 Aligned_cols=72 Identities=32% Similarity=0.511 Sum_probs=61.6
Q ss_pred eEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccccCCCCCeEEEEE
Q 008433 436 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 508 (565)
Q Consensus 436 ~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~ 508 (565)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+||||+++.++..++ ...+.++.++|+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vd 90 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVD 90 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEe
Confidence 699999999999999999999999999999999999999999999999999988765543 223344555554
No 49
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.96 E-value=1.3e-28 Score=277.58 Aligned_cols=173 Identities=21% Similarity=0.273 Sum_probs=128.9
Q ss_pred CCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccc
Q 008433 323 MSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKL 402 (565)
Q Consensus 323 ~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~ 402 (565)
..++.++.| ..+| +|+||+|+||||||++ |+.+ |+|++.+.+..|.+.+
T Consensus 158 ~~~~l~~~i-~g~V-~KvgdnInTD~I~Pa~----------~~~~--------------Rsdipl~a~~~~e~~~----- 206 (835)
T PRK09238 158 SRPELPEKI-TVTV-FKVTGETNTDDLSPAP----------DAWS--------------RPDIPLHALAMLKNRR----- 206 (835)
T ss_pred CCCCCcccc-EEEE-EEeCCCCchhccCCcc----------cccc--------------CCCHHHHHHHhccCCC-----
Confidence 345566778 5677 9999999999999994 4432 6888989888887742
Q ss_pred cCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhh------------hhcCceEEEecch
Q 008433 403 LNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP------------MLLGVKAVIAKSF 470 (565)
Q Consensus 403 ~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~------------~~LGv~AVIA~SF 470 (565)
+ .+.+.++.++..| ..|+|+|+|||||||||||++++ +..++++|||+||
T Consensus 207 ------p-----------~f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~Sf 268 (835)
T PRK09238 207 ------P-----------GPIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKI 268 (835)
T ss_pred ------C-----------cHHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCch
Confidence 1 0223333333334 35999999999999999999996 3334699999999
Q ss_pred HHHHhhhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeE-EEEEeeCCCHHHHHHHHh
Q 008433 471 ERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDH 549 (565)
Q Consensus 471 arIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~-~~~~~~~~t~~e~~~~~a 549 (565)
||||++|++|+|+|||+++ ++.+. .++.++|++.. | +|+ ..+|+. +.+.+ .++.+++++++
T Consensus 269 ArIFf~Nain~GlLpIe~d----~~~i~--~Gd~i~Id~~~-------g-~I~--~~~g~~~~~f~l--~p~~~~div~A 330 (835)
T PRK09238 269 APIFFNTMEDSGALPIELD----VSKLN--MGDVIDIYPYK-------G-KIR--NETGEVIATFKL--KTDVLLDEVRA 330 (835)
T ss_pred HHHHHhhhHHcCCceEEeC----HHHcC--CCCEEEEECCC-------C-EEE--eCCCeEEEEEec--CcHHHHHHHHc
Confidence 9999999999999999985 45443 56778888743 2 333 234443 55554 47899999999
Q ss_pred cCHHHHHHHHhhh
Q 008433 550 GGILQYVIRNLIN 562 (565)
Q Consensus 550 GGll~yv~~~~~~ 562 (565)
||++||++.|-+.
T Consensus 331 GGli~~i~gr~l~ 343 (835)
T PRK09238 331 GGRIPLIIGRGLT 343 (835)
T ss_pred CChHHHHHhcccH
Confidence 9999999987653
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=4.2e-29 Score=224.49 Aligned_cols=100 Identities=26% Similarity=0.406 Sum_probs=83.0
Q ss_pred cCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCCCcc
Q 008433 340 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEK 419 (565)
Q Consensus 340 ~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~~ 419 (565)
..|||+||||+|+ +||... -..++.|.+++|.+.+ |
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~-------------~~~~e~la~~~~e~~d-----------p---------- 37 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQD-------------DITPEKMAEVCMENYD-----------S---------- 37 (129)
T ss_pred CccccchhccCcc----------cccccC-------------CCCHHHHHHhhcccCC-----------c----------
Confidence 3589999999999 676211 0256788998888743 2
Q ss_pred chhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCC
Q 008433 420 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 490 (565)
Q Consensus 420 ~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~ 490 (565)
+++.+.+ .+.|||||+|||||||||||+++++.+||+||||+||+|||++|++|+|+|||++++
T Consensus 38 ----~f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 38 ----EFSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred ----hhhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 2333444 368999999999999999999999999999999999999999999999999999875
No 51
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=99.93 E-value=1e-25 Score=241.52 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=140.9
Q ss_pred CCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccC
Q 008433 17 EPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRH 95 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~v-eP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (565)
+||.+|+|..+|||||++| ||++|+|.+||++..++|+..+ ++
T Consensus 650 e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~--------------~i---------------------- 693 (852)
T COG1049 650 EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD--------------KI---------------------- 693 (852)
T ss_pred CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC--------------cc----------------------
Confidence 6899999999999999999 9999999999999999998742 22
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccc
Q 008433 96 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTC 175 (565)
Q Consensus 96 g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~C 175 (565)
+.+|||||... ..+++++|++| +|.+-.-..+++|+|-++....+|.++|.+.+|-++|+++--|||+.|
T Consensus 694 ---devFiGSCMtn-iGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLC 763 (852)
T COG1049 694 ---DEVFIGSCMTN-IGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLC 763 (852)
T ss_pred ---ceeeeehhhcc-chhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCcccc
Confidence 33899999866 58999999999 444422227899999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
+||.... ++|.. .++|++|||+||+|.... +||+|.+|+|.+||-|+|
T Consensus 764 MGNQarv--------~dgat---V~sTSTRnF~nRlg~~a~-vyL~Saelaav~aiLGki 811 (852)
T COG1049 764 MGNQARV--------ADGAT---VFSTSTRNFPNRLGKGAN-VYLASAELAAVCAILGKI 811 (852)
T ss_pred cccHhhh--------ccCCE---EEeeccccCCcccccccc-eeeeccHHHHHHHHHcCC
Confidence 9997543 35665 489999999999998765 899999999999999998
No 52
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.91 E-value=1.5e-24 Score=244.24 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=124.7
Q ss_pred CCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCC
Q 008433 326 PGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 405 (565)
Q Consensus 326 ~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~ 405 (565)
+.++.|+ .+ ++|+||+|+||+|||+ +|+.. |.+.+.+.+..|.+.+
T Consensus 162 ~~~~~i~-g~-V~k~gddinTD~i~Pa----------~~a~s--------------r~D~~~~a~~m~~~~~-------- 207 (844)
T TIGR00117 162 ALAEKIT-VT-VFKVTGETNTDDLSPA----------PDAWT--------------RPDIPLHALAMLKNAR-------- 207 (844)
T ss_pred CcchheE-EE-EEEeCCCCchhccCCh----------hhhhc--------------CCCHHHHHHHHhhcCC--------
Confidence 3445563 45 4799999999999999 77765 4567777777776632
Q ss_pred ccCCceeccCCCccchhhhHHHHHHhcCCce-EEEecCCcCCCCchhhhhhhh-------------hhcCceEEEecchH
Q 008433 406 EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDT-VILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFE 471 (565)
Q Consensus 406 ~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~-iIVAG~nyG~GSSRE~AA~~~-------------~~LGv~AVIA~SFa 471 (565)
++. .+.....++. +. |+|+|+|||||||||||+.++ +.+| .+|||+|||
T Consensus 208 -p~~-------------~~~i~~~~~~--Gd~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfA 270 (844)
T TIGR00117 208 -EGI-------------EPQIEALKQK--GFPVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIA 270 (844)
T ss_pred -ccH-------------HHHHHHhccC--CCeEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccCh
Confidence 111 1111222333 44 999999999999999999999 9999 999999999
Q ss_pred HHHhhhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeE-EEEEeeCCCHHHHHHHHhc
Q 008433 472 RIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 472 rIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~-~~~~~~~~t~~e~~~~~aG 550 (565)
|||+||++|.|+|||+++ .+. +..++.++|++.. | +|+. .+|++ +++.+. ++..++++++|
T Consensus 271 rIFfrnain~Gl~~ie~~----~~~--l~~GD~i~Id~~~-------G-~I~n--~~g~~~~~f~~~--p~~l~div~AG 332 (844)
T TIGR00117 271 PIFFNTMEDSGALPIEVD----VSN--LNMGDVIDIYPYK-------G-EITN--HEGELLATFELK--PETLLDEVRAG 332 (844)
T ss_pred HhhhcchhhcCCCeEEeC----Hhh--cCCCCEEEEECCC-------C-EEEe--CCCCEEEEeeeC--CHHHHHHHHcC
Confidence 999999999999999885 333 3457778888743 3 3332 24554 777653 78899999999
Q ss_pred CHHHHHHHHhh
Q 008433 551 GILQYVIRNLI 561 (565)
Q Consensus 551 Gll~yv~~~~~ 561 (565)
|++||+..|-+
T Consensus 333 Gli~~i~gr~l 343 (844)
T TIGR00117 333 GRIPLIIGRGL 343 (844)
T ss_pred Cchhhhhcccc
Confidence 99999987654
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.91 E-value=6.3e-25 Score=199.85 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=51.6
Q ss_pred eEEEecCCcCCCCchhhhhhhhh------------hcCceEEEecchHHHHhhhhccCCccceecC
Q 008433 436 TVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 489 (565)
Q Consensus 436 ~iIVAG~nyG~GSSRE~AA~~~~------------~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~ 489 (565)
.|+|||+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~ 117 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLD 117 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeC
Confidence 49999999999999999999998 7799999999999999999999999999886
No 54
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.82 E-value=4.9e-20 Score=207.68 Aligned_cols=119 Identities=21% Similarity=0.258 Sum_probs=96.7
Q ss_pred hHHHHHHhcCCceEEEecCCcCCCCchhhhhhhh-------------hhcCceEEEecchHHHHhhhhccCCccceecCC
Q 008433 424 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 490 (565)
Q Consensus 424 ~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~-------------~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~ 490 (565)
+.-...|+.|.| |+|+|+|||||||||||+.+. +.+|+.+ ||+||||||++|++|.|+|||+++
T Consensus 283 ~~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~- 359 (938)
T PLN00094 283 AQIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD- 359 (938)
T ss_pred HHHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc-
Confidence 344677888876 899999999999999999999 9999999 999999999999999999999986
Q ss_pred CccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEE-EEEeeCCCHHHHHHHHhcCHHHHHHHHhh
Q 008433 491 GEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLI 561 (565)
Q Consensus 491 ~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~-~~~~~~~t~~e~~~~~aGGll~yv~~~~~ 561 (565)
.+.+ ..++.++|++.. | +|+. ..+|+++ .+... ++..++++++||++||++-|-+
T Consensus 360 ---v~~i--~~GD~I~id~~~-------G-~I~n-~~~g~~~~~f~~~--p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 ---VKNL--NMGDVIDIYPYE-------G-VVKR-HGTDEVITTFSLK--TPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred ---Hhhc--CCCCEEEEEcCC-------C-EEEe-cCCCeEEEeccCC--ChHHHHHHHcCCcHhhhhcccc
Confidence 3333 456777888643 4 3322 3467777 66653 7899999999999999997654
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.79 E-value=1.1e-19 Score=163.45 Aligned_cols=90 Identities=30% Similarity=0.352 Sum_probs=70.0
Q ss_pred CCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccccC-CCCCeEEEEEcCCCccccCCCceEEE
Q 008433 446 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG-LTGHERYTIDLPSSVSEIRPGQDVRV 524 (565)
Q Consensus 446 ~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~-l~~~e~~~i~l~~~~~~~~~g~~i~v 524 (565)
||||||||+|+++.+|++||||+||++||++|++|+||||+++.++ .++.|. +..++.++||+.+ ++ |
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~-~~~~l~~~~~g~~i~vDL~~--------~~--v 70 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPRE-VREKLAQLKPTDQVTVDLEQ--------QK--I 70 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHH-HHHHHhccCCCCEEEEEcCC--------CE--E
Confidence 8999999999999999999999999999999999999999997754 345332 3567788998853 23 3
Q ss_pred EcCCCeEEEEEeeCCCHHHHHHHHhc
Q 008433 525 VTDSGKSFTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 525 ~~~~g~~~~~~~~~~t~~e~~~~~aG 550 (565)
+. .++++++.+ .+..++.|.+|
T Consensus 71 ~~-~~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 71 IS-PVEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred Ec-CCeEEEEEE---CHHHHHHHHhC
Confidence 32 246677776 45566666666
No 56
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.78 E-value=2.5e-08 Score=95.97 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=97.8
Q ss_pred EEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccC
Q 008433 336 CLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIP 415 (565)
Q Consensus 336 vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p 415 (565)
+++|+.+.++||++|||.. -| -|++++.-+...+.+.+ .++
T Consensus 2 ~vfkV~GEtnTDdLSPa~d--------A~----------------SRpDiPLHA~aMl~~~~---------~~~------ 42 (204)
T PF06434_consen 2 TVFKVPGETNTDDLSPAPD--------AW----------------SRPDIPLHALAMLKNRR---------PGP------ 42 (204)
T ss_dssp EEEEEEEEEEHHHHS-GGG--------GG----------------GTTSHHHHHCCTT-S-B---------TTS------
T ss_pred eEEEeCCccccCcCCcccc--------cc----------------CCCCchHHHHHhccccc---------ccH------
Confidence 4678899999999999964 12 15666655555554422 222
Q ss_pred CCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCc------------eEEEecchHHHHhhhhccCCc
Q 008433 416 TGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGI 483 (565)
Q Consensus 416 ~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv------------~AVIA~SFarIh~~Nlin~Gi 483 (565)
.+.-+..|+.|.+.+.| |.--|.||||--|.-.....+. -.||...+|-||++-+---|-
T Consensus 43 -------l~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGa 114 (204)
T PF06434_consen 43 -------LEQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGA 114 (204)
T ss_dssp -------HHHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-
T ss_pred -------HHHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCC
Confidence 23446778888886666 6669999999999877654433 368999999999999999999
Q ss_pred cceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeE-EEEEeeCCCHHHHHHHHhcCHHHHHHHHhhh
Q 008433 484 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLIN 562 (565)
Q Consensus 484 LPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~yv~~~~~~ 562 (565)
||++++ -.+ +..++.++|+.-. | + +...+|+. .++.+. ++...+-++|||-++.+.-|-+.
T Consensus 115 LPIe~d----v~~--l~~Gdvi~I~p~~-------g-k--i~~~~gev~~~f~l~--p~~l~DevrAGGri~LiiGR~Lt 176 (204)
T PF06434_consen 115 LPIECD----VSS--LNTGDVITIYPYE-------G-K--IYKENGEVISTFELK--PQTLLDEVRAGGRIPLIIGRGLT 176 (204)
T ss_dssp EEEE-------TT----TT-EEEEETTT-------T-E--EEETT--EEEE---S---TCHHHHHHHTSHHHHHHHHHHH
T ss_pred ceEEEe----ccc--cCCCcEEEEecCC-------c-E--EECCCCCEEEEeecC--chhHHHHHhcCCcEEEEechHHH
Confidence 999874 223 3456777777532 3 2 33344552 334443 55667899999999999876543
No 57
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=98.14 E-value=1.4e-06 Score=92.56 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=109.4
Q ss_pred CCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccCCCeEE
Q 008433 21 ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVI 100 (565)
Q Consensus 21 ~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~v~i 100 (565)
.+.|-.-+.+|.+..+|..+.|++ ||.=-=++- .|-.|..
T Consensus 330 ~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSR---------------------------------------EHAPv~L 369 (502)
T KOG0454|consen 330 PKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSR---------------------------------------EHAPVCL 369 (502)
T ss_pred chhhccceeccccccceeEEEecc-CCccccccc---------------------------------------ccCcchh
Confidence 366777788888888888888776 543221111 1222344
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHH-----HHHHc---ChHHHHHhcCcEEeccCc
Q 008433 101 AAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK-----YLQNS---GLQKYLNHLGFHIVGYGC 172 (565)
Q Consensus 101 a~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~-----~l~~~---Gl~~~l~~aG~~i~~~gC 172 (565)
+++|+||...-++.|++ +|+-+..|+.++ +...+.|--+-+.. .+..+ =++.+.+..+..=+.|.|
T Consensus 370 ~~~GakaivA~Sya~IF----frN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~ 443 (502)
T KOG0454|consen 370 GAAGAKAIVAPSYARIF----FRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFG 443 (502)
T ss_pred hhcccceecchhHHHHH----HHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCccc
Confidence 78999999998887655 455677899887 23344444433322 11111 245566677776678999
Q ss_pred ccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCC
Q 008433 173 TTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 234 (565)
Q Consensus 173 g~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~ 234 (565)
..|.++.-. .+. +..+.+. .|+|+||||++|||.+..+.|||||-+|+|+++.|+
T Consensus 444 ~aclV~~ad---~I~-~~~~ke~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 444 DACLVIDAD---GIF-AYARKEG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred ccCcccCch---HHH-Hhhcccc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 999998621 222 2223333 589999999999999999999999999999999998
No 58
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=97.08 E-value=0.0018 Score=71.88 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=74.0
Q ss_pred hHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCc------------eEEEecchHHHHhhhhccCCccceecCCC
Q 008433 424 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPG 491 (565)
Q Consensus 424 ~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv------------~AVIA~SFarIh~~Nlin~GiLPL~f~~~ 491 (565)
..-+..++.|.+.+-|++- -|.||||-.|.-.....+. ..|+.--.+.||++-.---|-||++++-
T Consensus 212 ~~i~~lk~Kg~~vayvgdv-vGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv- 289 (852)
T COG1049 212 KQIEALKQKGHPVAYVGDV-VGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV- 289 (852)
T ss_pred HHHHHHhhcCceEEEeccc-cccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee-
Confidence 3346677778876555555 9999999988755443332 2455556677888888888888887632
Q ss_pred ccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEE-EEEeeCCCHHHHHHHHhcCHHHHHHHH
Q 008433 492 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRN 559 (565)
Q Consensus 492 ~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~-~~~~~~~t~~e~~~~~aGGll~yv~~~ 559 (565)
.+ +..++.++|+-- .| ++. +..+|+.+ .|.+ .|+..++-+++||-++.+.-|
T Consensus 290 ---~~--l~~Gdvi~i~py-------~g-ki~-~~~~ge~v~~f~l--kt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 ---SN--LEMGDVIDIYPY-------EG-KIR-NNNTGEVVATFSL--KTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ---cc--ccccceEEeecc-------CC-eee-ccCCCcEEEEeec--CchhHHHHHhcCCceeEEEcc
Confidence 22 334566666532 13 221 12234432 3333 388899999999988876543
No 59
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.94 E-value=0.025 Score=61.53 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=61.5
Q ss_pred cCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCc
Q 008433 94 RHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 172 (565)
Q Consensus 94 ~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gC 172 (565)
.++++++++|| |=--|++.++..|.+| +|+++++.+.++|. -|+.|+..+.+.|+.+.|+++|++|+.-.|
T Consensus 286 ~~~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 286 GDEKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 34567767775 8888999999999999 79999999988887 578999999999999999999999996555
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.46 E-value=0.24 Score=53.10 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=59.8
Q ss_pred ccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCc
Q 008433 93 LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 172 (565)
Q Consensus 93 ~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gC 172 (565)
..++.+++.+|| |---|.+.++..|.+| +|++-++.+.++|. -|+.|..++.+.|+++.|+++|.+++.-.|
T Consensus 285 ~~~~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 285 TADGEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred cCCCCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 344556666665 8888899999999999 78888888887776 589999999999999999999999997554
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=90.86 E-value=0.61 Score=50.71 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=56.8
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCccccc
Q 008433 97 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCI 176 (565)
Q Consensus 97 ~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~Ci 176 (565)
++++++| +|=--|.+.++.-|.+| +|+++++.++++|. -|+.|+ +.+.|+.+.|+++|+.|+.-.|. |+
T Consensus 278 ~~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v 346 (389)
T cd01355 278 EPDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VV 346 (389)
T ss_pred CCCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-ee
Confidence 4666677 68888999999999999 79877777776665 466776 88999999999999999997776 65
No 62
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=52.13 E-value=17 Score=33.35 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=28.3
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 100 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 100 ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
|++||+|..|=---.| ||.-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6899999999766666 78888899999999887
No 63
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=48.43 E-value=16 Score=31.29 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=26.4
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 102 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 102 ~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
+|++|..+.-.-+| ||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht~l-Aae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTFM-AAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 68999999877655 88899888999999877
No 64
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=35.92 E-value=41 Score=30.42 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.0
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 100 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 100 ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
+.+|++|..+.-.-+| ||..|.+.|.+.|..+.
T Consensus 5 ivaVtacp~GiAht~l-AAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHTYM-AAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 5789999999877654 88999888999999877
No 65
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=35.60 E-value=46 Score=32.86 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=44.4
Q ss_pred CCeeEEEEcC--CHHHHHHHHHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCC
Q 008433 134 PWIKTSLAPG--SGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV 211 (565)
Q Consensus 134 ~~vk~~v~Pg--S~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~ 211 (565)
+.+.-.|.|| |-.+..-+.+.|+++.|.+.=.. --|-=|||-|+- -++.++.+.-...-+ .+-=-+-+||.-||+
T Consensus 37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~~~~~~L-g~mdi~V~RNAfGRQ 113 (194)
T COG0311 37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDGPEQPLL-GLLDVTVRRNAFGRQ 113 (194)
T ss_pred ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCCCCCccc-ceEEEEEEccccccc
Confidence 4577889999 67778888999999988664222 234446898863 122222210001111 111135689999998
No 66
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=24.67 E-value=1.1e+02 Score=29.33 Aligned_cols=68 Identities=26% Similarity=0.272 Sum_probs=49.8
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHHhc-CCccCCCeeEEEEcCCHH---HHHHHHHcChHHHHHhcCcEEec
Q 008433 98 VVIAAITSCTNTSNPSVMLGAALVAKKACEL-GLEVKPWIKTSLAPGSGV---VTKYLQNSGLQKYLNHLGFHIVG 169 (565)
Q Consensus 98 v~ia~IgSCTN~s~~dl~~aA~llak~A~~~-G~kv~~~vk~~v~PgS~~---V~~~l~~~Gl~~~l~~aG~~i~~ 169 (565)
+.++++.||-|...-|-|... |+.+.++ |-... .+...-+||+-. +.+.|.+.|-.+....+|+.|.|
T Consensus 13 ~riaIV~arfn~~I~d~ll~g---A~~~l~~~G~~~~-~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG 84 (152)
T COG0054 13 LRIAIVVARFNDDITDALLEG---AVDALKRHGADVD-NIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRG 84 (152)
T ss_pred ceEEEEEeehhHHHHHHHHHH---HHHHHHHcCCCcc-cceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeC
Confidence 457999999999887766544 3334444 55544 677899999965 56777788888888888888876
No 67
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=23.13 E-value=76 Score=29.43 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCCchHHHhhh---ccCCeEEeeeeeccccC
Q 008433 180 GDIDDAVAAAI---TENDIVAAAVLSGNRNF 207 (565)
Q Consensus 180 ~~~~~~~~~~i---~~~~~~~~sv~s~NRNF 207 (565)
|.+++.+.+-+ .+.+++...+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 45666666666 45567777899999999
No 68
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.40 E-value=1.3e+02 Score=33.49 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=52.2
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHhcCC--ccCCCeeEEEEcCCHHHHHHHHH--cChHHHHHhcC--cEEeccCcccc
Q 008433 102 AITSCTNTSNPSVMLGAALVAKKACELGL--EVKPWIKTSLAPGSGVVTKYLQN--SGLQKYLNHLG--FHIVGYGCTTC 175 (565)
Q Consensus 102 ~IgSCTN~s~~dl~~aA~llak~A~~~G~--kv~~~vk~~v~PgS~~V~~~l~~--~Gl~~~l~~aG--~~i~~~gCg~C 175 (565)
|=.+++|- .+|.+.=-..| |...+.|+ ++++++ .-..|...-...+++ .-+.+.|.+.| +.|+.+.||+|
T Consensus 274 YD~~~~n~-Dpn~v~PlD~L-reLekEG~IG~L~~~f--yst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC 349 (431)
T TIGR01918 274 FDPAYANA-DPDRVVPVDVL-RDYEKEGKIGELHEYF--YSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTC 349 (431)
T ss_pred cChHHHhc-CCCeeeeHHHH-HHHHHcCCcccccCee--EEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcc
Confidence 34455543 34444444444 33334565 566655 455555555555554 45788888766 77899999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeee
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLS 202 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s 202 (565)
-=-+.. +.+.|+...+-++-+.+
T Consensus 350 ~r~~a~----m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 350 TRCGAT----MVKEIERAGIPVVHMCT 372 (431)
T ss_pred hhHHHH----HHHHHHHcCCCEEEEee
Confidence 843322 34445555554444444
No 69
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=20.68 E-value=57 Score=30.35 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=16.7
Q ss_pred cceEEeecCCCcccccccCC
Q 008433 333 GAYCLLNFGDSITTDHISPA 352 (565)
Q Consensus 333 ~~~vl~~~gD~itTDhIsPa 352 (565)
.....-.+.++++||.|+|+
T Consensus 8 ~G~~~~~~~s~idtd~i~p~ 27 (131)
T PF00694_consen 8 KGVAVPDFNSNIDTDQIIPA 27 (131)
T ss_dssp EEEEEEEHHSTGGGHHHSCG
T ss_pred eCccccccccccccccccHH
Confidence 34566778899999999999
No 70
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.51 E-value=92 Score=27.86 Aligned_cols=39 Identities=26% Similarity=0.524 Sum_probs=25.0
Q ss_pred HHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcc
Q 008433 123 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCT 173 (565)
Q Consensus 123 k~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg 173 (565)
+++.++|.+ ..++.|| ..++-+++...+.|.+++++.|.
T Consensus 73 ~~~~~~g~~-----~v~~~~g-------~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 73 DEAAALGVK-----AVWLQPG-------AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHHHT-S-----EEEE-TT-------S--HHHHHHHHHTT-EEEESS-H
T ss_pred HHHHHcCCC-----EEEEEcc-------hHHHHHHHHHHHcCCEEEeCCcc
Confidence 566667743 4588999 34455677888899999999985
No 71
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=20.37 E-value=1e+02 Score=28.31 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=16.8
Q ss_pred CchHHHhhhc---cCCeEEeeeeeccccC
Q 008433 182 IDDAVAAAIT---ENDIVAAAVLSGNRNF 207 (565)
Q Consensus 182 ~~~~~~~~i~---~~~~~~~sv~s~NRNF 207 (565)
.+..+.+-++ +...+--.|.||||||
T Consensus 57 vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 57 VPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp S-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred CCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 5556666666 4555555689999999
No 72
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.05 E-value=1.3e+02 Score=33.29 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHhcCC--ccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcC--cEEeccCcccccC
Q 008433 124 KACELGL--EVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLG--FHIVGYGCTTCIG 177 (565)
Q Consensus 124 ~A~~~G~--kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG--~~i~~~gCg~CiG 177 (565)
...+.|+ +++|++=+.+-=|+.+....-...-+.+.|.+.| +.|+.+.||+|-=
T Consensus 294 eLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtr 351 (431)
T TIGR01917 294 DLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTR 351 (431)
T ss_pred HHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchh
Confidence 3334565 6777663333334433332223345888888877 6788999999973
Done!