Query 008433
Match_columns 565
No_of_seqs 377 out of 2209
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 5E-150 2E-154 1273.7 41.0 556 2-562 332-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 4E-109 1E-113 930.0 39.7 457 2-560 275-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 8.2E-46 2.8E-50 418.9 18.9 161 17-235 659-820 (865)
4 2pkp_A Homoaconitase small sub 100.0 1.8E-41 6.1E-46 321.8 12.6 156 337-562 7-162 (170)
5 1v7l_A 3-isopropylmalate dehyd 100.0 4.2E-41 1.5E-45 317.0 9.9 151 337-560 7-158 (163)
6 3vba_A Isopropylmalate/citrama 100.0 3.1E-39 1.1E-43 306.7 12.7 160 333-561 6-165 (176)
7 1l5j_A Aconitate hydratase 2; 100.0 2.6E-40 8.8E-45 374.1 1.7 282 206-563 48-355 (865)
8 2hcu_A 3-isopropylmalate dehyd 100.0 3.5E-38 1.2E-42 307.7 10.1 180 315-550 5-187 (213)
9 3h5j_A 3-isopropylmalate dehyd 100.0 3.5E-34 1.2E-38 269.9 8.4 155 333-550 11-169 (171)
10 3q3w_A 3-isopropylmalate dehyd 100.0 7.6E-34 2.6E-38 274.5 7.3 163 333-550 11-177 (203)
11 2r4q_A Phosphotransferase syst 67.0 4.2 0.00014 35.2 3.5 33 100-133 5-37 (106)
12 2r48_A Phosphotransferase syst 66.1 4.7 0.00016 34.9 3.7 33 100-133 5-37 (106)
13 2kyr_A Fructose-like phosphotr 58.9 5.2 0.00018 34.9 2.7 34 99-133 7-40 (111)
14 2m1z_A LMO0427 protein; homolo 55.4 7.3 0.00025 33.6 3.0 33 100-133 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=4.7e-150 Score=1273.70 Aligned_cols=556 Identities=59% Similarity=1.048 Sum_probs=516.1
Q ss_pred HHHHHHHcCCCCCCCCCC-CCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccc
Q 008433 2 IESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 80 (565)
Q Consensus 2 v~~yl~~~g~~~~~~~~d-~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (565)
+++|++++++|+++. || ++|.|+++|+||||+|+|+||||++|||++||+|++++|.+++.+.++.+|+..+.+.+..
T Consensus 332 ~e~y~~a~~l~~~l~-~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~ 410 (888)
T 2b3y_A 332 IKKYLQAVGMFRDFN-DPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHND 410 (888)
T ss_dssp HHHHHHHHTCCCCTT-CGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTC
T ss_pred HHHHHHHHHHHhccC-CCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcc
Confidence 577888888888753 45 8999999999999999999999999999999999999988777653322222111011101
Q ss_pred cceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHH
Q 008433 81 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYL 160 (565)
Q Consensus 81 ~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l 160 (565)
...++|+|.+.+|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|
T Consensus 411 ~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l 490 (888)
T 2b3y_A 411 HKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYL 490 (888)
T ss_dssp EEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHH
T ss_pred cceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHH
Confidence 23467888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCccCCCC
Q 008433 161 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 240 (565)
Q Consensus 161 ~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~ 240 (565)
+++||+|++|||||||||++++.++++++|++|+++++||||+||||+||||+..+++|||||+|||||||+|+|++|++
T Consensus 491 ~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~~d~~ 570 (888)
T 2b3y_A 491 SQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFE 570 (888)
T ss_dssp HHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTT
T ss_pred HHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeeecccc
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCC
Q 008433 241 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKD 320 (565)
Q Consensus 241 t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~ 320 (565)
+||++.+.+|++|||+||||+.+|+++++...+++++|...|..++.+++.|+.++.|+++.|+|+++||||+.||||++
T Consensus 571 ~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~~~p~f~~ 650 (888)
T 2b3y_A 571 KEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFEN 650 (888)
T ss_dssp TSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCCCCGGGTT
T ss_pred cCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCcccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhc
Q 008433 321 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 400 (565)
Q Consensus 321 ~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n 400 (565)
++..+...+++.++++|+++|||||||||||||+|+.+||||+||+++|+.+++||||||||||||||+||+|+|+|+.|
T Consensus 651 ~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n 730 (888)
T 2b3y_A 651 LTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLN 730 (888)
T ss_dssp CCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEE
T ss_pred cccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhccccccccc
Confidence 98877777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhcc
Q 008433 401 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 480 (565)
Q Consensus 401 ~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin 480 (565)
+|++ .+|++|+|.|+|+.+++||+|++|+++|.++|||||+|||||||||||||+++++||+||||+||+|||++||+|
T Consensus 731 ~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~ 809 (888)
T 2b3y_A 731 RFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVG 809 (888)
T ss_dssp TTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHH
T ss_pred cccc-ccCCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhh
Confidence 9997 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHh
Q 008433 481 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 481 ~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~ 560 (565)
||||||+|+++++|+++.+.+++.++|++.+ .++||+.+++...+|++|.+.++++|+.|++||++||+|||+++++
T Consensus 810 ~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 886 (888)
T 2b3y_A 810 MGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 886 (888)
T ss_dssp HTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHHTSHHHHHHHHH
T ss_pred cCCceEeecccccHHHhccCCCceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999999998888888888998753 4889987765436789999999999999999999999999999988
Q ss_pred hh
Q 008433 561 IN 562 (565)
Q Consensus 561 ~~ 562 (565)
++
T Consensus 887 ~~ 888 (888)
T 2b3y_A 887 AK 888 (888)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=4.3e-109 Score=930.01 Aligned_cols=457 Identities=30% Similarity=0.440 Sum_probs=384.1
Q ss_pred HHHHHHHcCC----------CCCCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccCCcccchhhhhhcccccCCCc
Q 008433 2 IESYLRANKM----------FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 71 (565)
Q Consensus 2 v~~yl~~~g~----------~~~~~~~d~~a~Y~~vieiDLs~veP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~ 71 (565)
+.+||+.+++ |+.+ .+|++|.|+++|+||||+|+|+||||++|||++||+|+...+.+
T Consensus 275 T~~YL~~~gr~~~~~~~~~y~~~l-~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~~~~~~----------- 342 (753)
T 1c96_A 275 MKKYLSKTGRADIANLADEFKDHL-VPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEK----------- 342 (753)
T ss_dssp HHHHHHHTTCHHHHHHHHHTGGGS-SCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHH-----------
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhc-cCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhhhhHhh-----------
Confidence 5789999987 1222 58999999999999999999999999999999999999865432
Q ss_pred cCccccccccceeecCCCcccccCCCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHH
Q 008433 72 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYL 151 (565)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~~~g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l 151 (565)
++++ -.|++|||||||||||+||+ +|+.|+|+|+++|++ +.||++|+|||++|+++|
T Consensus 343 ---------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~-~AA~ilkga~~~~v~--~~V~~~v~PgS~~V~~~~ 399 (753)
T 1c96_A 343 ---------------EGWP-----LDIRVGLIGSCTNSSYEDMG-RSAAVAKQALAHGLK--CKSQFTITPGSEQIRATI 399 (753)
T ss_dssp ---------------HTCC-----CBEEEEEEBTTTBCSHHHHH-HHHHHHHHHHTTTCC--CSSEEEECCSBHHHHHHH
T ss_pred ---------------cCCc-----cceEEEEEecCCCCCHHHHH-HHHHHhccHhhcCCC--CCceEEEeCCCHHHHHHH
Confidence 0111 14688999999999999965 555667888887765 459999999999999999
Q ss_pred HHcChHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCC-CccCCceecCHHHHHHHH
Q 008433 152 QNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYA 230 (565)
Q Consensus 152 ~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g-~~~~~~yLaSP~lvaA~A 230 (565)
+++||+++|+++||.|++|||||||||++++. +..++. .++|||+||||+|||| +..+.+|||||+||||+|
T Consensus 400 ~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~------~~~~~~-~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~A 472 (753)
T 1c96_A 400 ERDGYAQVLRDVGGIVLANACGPCIGQWDRKD------IKKGEK-NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALA 472 (753)
T ss_dssp HHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS------SCTTCC-EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHH
T ss_pred HHcCcHHHHHHcCcEEecCCceeeecCCCCcc------cccCCc-ceEEecccCCcccccCCCCCCceeecCHHHHHHHH
Confidence 99999999999999999999999999998743 012222 1479999999999994 555779999999999999
Q ss_pred HhCCccCCCCCCCcccCCCCcccccccCCCChHHHHHHhhhccCchhHHhhhhhccCCCccccccCCCC-CCccccCCCc
Q 008433 231 LAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKS 309 (565)
Q Consensus 231 laG~i~~d~~t~pl~~~~~g~~v~l~d~~P~~~ei~~~~~~~~~~~~~~~~y~~i~~g~~~w~~~~~~~-~~~~~wd~~s 309 (565)
|+|+|++|+.+||+ .++||++|||+| |+.+|+++ .+|. .++..|+.++.+. +..|.|+++|
T Consensus 473 iaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~--------~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s 534 (753)
T 1c96_A 473 IAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR--------AEFD-------PGQDTYQHPPKDSSGQRVAVSPTS 534 (753)
T ss_dssp HHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------SCCC-------CCSCCEECCCSCCTTCCCCCCTTC
T ss_pred HcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh--------hhcc-------CCccccccCCCCCCcceEeeCCCC
Confidence 99999999999999 789999999999 88888653 2222 4577899877665 6789999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhh
Q 008433 310 TYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 389 (565)
Q Consensus 310 t~i~~~P~~~~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~ 389 (565)
+||+.+|+|++|+. .++.++++|+++||+|||||||||| +||++|
T Consensus 535 ~~~~~~~~f~~~~~-----~~~~~~~vL~klgd~iTTDhIsPAG---------~~L~~r--------------------- 579 (753)
T 1c96_A 535 QRLQLLEPFDKWDG-----KDLEDLQILIKVKGKCTTDHISAAG---------PWLKFR--------------------- 579 (753)
T ss_dssp SSBCCCCCCCCCCS-----SCEEEEEEEEEBCSCCBHHHHBCCG---------GGGGGT---------------------
T ss_pred ccccCCCCCCCCCc-----cccccceEEEeccCCcccccccccc---------hhhccc---------------------
Confidence 99999999988753 3577999999999999999999998 699873
Q ss_pred cccccccchhccccC--CccC---CceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceE
Q 008433 390 RGTFANIRLVNKLLN--GEVG---PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKA 464 (565)
Q Consensus 390 rg~f~n~r~~n~~~~--~~~g---~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~A 464 (565)
|+|+|++ .|.|.. +.++ .+++|+|+|+.+.++|+|++|+++|.++|||||+|||||||||||||++++|||+|
T Consensus 580 -g~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~a 657 (753)
T 1c96_A 580 -GHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRA 657 (753)
T ss_dssp -BCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEE
T ss_pred -cchhhhh-hhhccccccccCCCcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeE
Confidence 4666666 555543 1223 38899999999999999999999999999999999999999999999999999999
Q ss_pred EEecchHHHHhhhhccCCccceecCCCccccccCCCCCeEEEEEcCCCccccCCCceEEE--EcCCCeEEEEEeeC-CCH
Q 008433 465 VIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRV--VTDSGKSFTCVIRF-DTE 541 (565)
Q Consensus 465 VIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v--~~~~g~~~~~~~~~-~t~ 541 (565)
|||+||+||||+||+|||||||+|.++++|+.| .++|.++|+. +.++.+|+.+++ +..+|+++++.+.+ +|+
T Consensus 658 vIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~l--~~gd~i~I~g---l~~l~~g~~v~~~i~~~~g~~~~~~~~~~~t~ 732 (753)
T 1c96_A 658 IITKSFARIHETNLKKQGLLPLTFADPADYNKI--HPVDKLTIQG---LKDFAPGKPLKCIIKHPNGTQETILLNHTFNE 732 (753)
T ss_dssp EEESCBCHHHHHHHHHTTCEEEEESSGGGGGGC--CTTCEEEEEC---GGGCCTTCCEEEEEECTTSCEEEEEEECCCCH
T ss_pred EEehhHHHHHHhhhhhcCCcceeecCcchhhhc--CCCCEEEEcC---hHHcCCCceEEEEEEecCCcEEEEEEeCCCCH
Confidence 999999999999999999999999988889865 5788888872 225788886654 45568776666533 599
Q ss_pred HHHHHHHhcCHHHHHHHHh
Q 008433 542 VELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 542 ~e~~~~~aGGll~yv~~~~ 560 (565)
.|++||++||||||++++.
T Consensus 733 ~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 733 TQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp HHHHHHHHTSHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHhh
Confidence 9999999999999999863
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=8.2e-46 Score=418.89 Aligned_cols=161 Identities=23% Similarity=0.375 Sum_probs=147.0
Q ss_pred CCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccCCcccchhhhhhcccccCCCccCccccccccceeecCCCcccccC
Q 008433 17 EPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRH 95 (565)
Q Consensus 17 ~~d~~a~Y~~vieiDLs~v-eP~iA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (565)
.+|++|.|+++|+||||+| ||+||+|++|||++|++++.+ .++
T Consensus 659 ~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~--------------~~I---------------------- 702 (865)
T 1l5j_A 659 EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQG--------------EKI---------------------- 702 (865)
T ss_dssp CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTT--------------CBC----------------------
T ss_pred ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhcc--------------ccc----------------------
Confidence 4799999999999999999 899999999999999999873 223
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCCHHHHHHHHHcChHHHHHhcCcEEeccCcccc
Q 008433 96 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTC 175 (565)
Q Consensus 96 g~v~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~~~vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~C 175 (565)
+++|||||||+ ++||+.||.+| ||+++++.|+++|+|||++|+++|+++|++++|+++||+|++||||||
T Consensus 703 ---d~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~C 772 (865)
T 1l5j_A 703 ---DEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLC 772 (865)
T ss_dssp ---CEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGG
T ss_pred ---ceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccc
Confidence 34899999877 99999888888 788899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHhhhccCCeEEeeeeeccccCCCCCCCccCCceecCHHHHHHHHHhCCc
Q 008433 176 IGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 235 (565)
Q Consensus 176 iG~~~~~~~~~~~~i~~~~~~~~sv~s~NRNF~gR~g~~~~~~yLaSP~lvaA~AlaG~i 235 (565)
|||++.+. +|++ ++||+||||+||||+. ..+|||||++|||+||+|+|
T Consensus 773 iGn~~~~~--------~ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAiaG~i 820 (865)
T 1l5j_A 773 MGNQARVA--------DGAT---VVSTSTRNFPNRLGTG-ANVFLASAELAAVAALIGKL 820 (865)
T ss_dssp TCSSSCCC--------TTCE---EEESSSCCCTTSSSTT-CEEEECCHHHHHHHHHHSBC
T ss_pred cCcCCcCC--------CCCE---EEecCCcCCCCCCCCC-cceEECCHHHHHHHHhCCcC
Confidence 99997654 5675 6899999999999954 57899999999999999999
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-41 Score=321.75 Aligned_cols=156 Identities=31% Similarity=0.502 Sum_probs=130.8
Q ss_pred EeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCC
Q 008433 337 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 416 (565)
Q Consensus 337 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~ 416 (565)
++++|||||||||+|+ +||+ |+|.+.|++++|.+++ |
T Consensus 7 v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------p------- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID-----------E------- 43 (170)
T ss_dssp EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------T-------
T ss_pred EEECCCCCChhhcChH----------HHhC---------------CCCHHHHHHHhcccCC-----------C-------
Confidence 7899999999999998 7874 5788999999999864 2
Q ss_pred CccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccc
Q 008433 417 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496 (565)
Q Consensus 417 g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~ 496 (565)
+++.+++. ++|||||+|||||||||||||+++++|++||||+||||||++||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 34455553 7899999999999999999999999999999999999999999999999999997 554
Q ss_pred cCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHhhh
Q 008433 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 562 (565)
Q Consensus 497 l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~~~ 562 (565)
+ .+++.++|++. +| +|+ ...+|+++++. ..++.++++|++||+|||++++++.
T Consensus 110 l--~~gd~i~idl~-------~~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 110 I--KDGDIVEIDLD-------KE-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp C--CTTCEEEEETT-------TT-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred c--CCCcEEEEECC-------CC-EEE-ECCCCeEEEEE--eCCHHHHHHHHcCCHHHHHHHHHHh
Confidence 4 56788888864 34 332 23468887663 4599999999999999999998754
No 5
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=4.2e-41 Score=316.97 Aligned_cols=151 Identities=34% Similarity=0.524 Sum_probs=126.5
Q ss_pred EeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCC
Q 008433 337 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 416 (565)
Q Consensus 337 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~ 416 (565)
++++|||||||||+|| +||+ |+|.+.+++++|.+++ |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------p------- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------P------- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------T-------
T ss_pred EEEcCCCCChhccchH----------HHhC---------------CCCHHHHHHHhCCccC-----------c-------
Confidence 6899999999999998 6765 5788899999998864 2
Q ss_pred CccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCccccc
Q 008433 417 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 496 (565)
Q Consensus 417 g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~ 496 (565)
+++.+++. ++|||||+|||||||||||||+++++||+||||+||||||++||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEG 109 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTT
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 34556653 6899999999999999999999999999999999999999999999999999996 444
Q ss_pred cCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeE-EEEEeeCCCHHHHHHHHhcCHHHHHHHHh
Q 008433 497 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNL 560 (565)
Q Consensus 497 l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~yv~~~~ 560 (565)
+ .+++.++|++.. | +| + +|++ +++ ...++.+++++++||+|||+++++
T Consensus 110 l--~~gd~i~idl~~-------~-~v--~--~g~~~~~~--~~~~~~~~~~l~aGGll~~~~~~~ 158 (163)
T 1v7l_A 110 L--KDGDLVTVNWET-------G-EV--R--KGDEILMF--EPLEDFLLEIVREGGILEYIRRRG 158 (163)
T ss_dssp C--CTTCEEEEETTT-------T-EE--E--ETTEEEEC--EECCHHHHHHHHTTSHHHHHHHSC
T ss_pred c--CCCcEEEEEccC-------C-EE--E--CCcEEEEE--EcCCHHHHHHHHcCCHHHHHHHHH
Confidence 4 567888888642 4 33 2 5666 655 234899999999999999999875
No 6
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.1e-39 Score=306.71 Aligned_cols=160 Identities=26% Similarity=0.488 Sum_probs=130.9
Q ss_pred cceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCcee
Q 008433 333 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 412 (565)
Q Consensus 333 ~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~ 412 (565)
..++ +++|||||||+|+|+ +||+ ++|.+.|.+++|.+++ |
T Consensus 6 ~g~v-~~~gdnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------p--- 45 (176)
T 3vba_A 6 KGRV-WKFGNNVDTDAILPA----------RYLV---------------YTKPEELAQFVMTGAD-----------P--- 45 (176)
T ss_dssp EEEE-EECCSSCBHHHHSCG----------GGTT---------------CCSHHHHGGGTTTTTC-----------T---
T ss_pred EEEE-EEeCCCcchhhcCcH----------HHhC---------------cCCHHHHHHhhCcCCC-----------c---
Confidence 3455 589999999999999 7874 4678889999999864 2
Q ss_pred ccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCc
Q 008433 413 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 492 (565)
Q Consensus 413 ~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~ 492 (565)
+++.+|+. ++|||||+|||||||||||+|+++.+|++||||+||||||++||+|+|+||++++ +
T Consensus 46 -----------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~ 109 (176)
T 3vba_A 46 -----------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--G 109 (176)
T ss_dssp -----------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--T
T ss_pred -----------cHHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--h
Confidence 34567763 6899999999999999999999999999999999999999999999998888776 4
Q ss_pred cccccCCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhcCHHHHHHHHhh
Q 008433 493 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 561 (565)
Q Consensus 493 ~~~~l~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~yv~~~~~ 561 (565)
+++.+ ..++.++|++.. + +|+. ..+|+++.+. .+ ++.+++++++||++||++++..
T Consensus 110 ~~~~~--~~gd~i~idl~~-------~-~v~~-~~~g~~~~~~-~l-~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 110 ISEKV--NEGDELEVNLET-------G-EIKN-LTTGEVLKGQ-KL-PEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HHHHC--CTTCEEEEETTT-------C-EEEE-TTTCCEEECC-CC-CHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHhc--CCCCEEEEECCC-------C-EEEe-CCCCeEEEEe-cC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 56655 456778888753 2 3332 3467888776 23 8999999999999999998764
No 7
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=2.6e-40 Score=374.14 Aligned_cols=282 Identities=20% Similarity=0.251 Sum_probs=217.6
Q ss_pred cCCCCCCCc------cCCceecCHHHHHHHHHhCCccCCCCCCCcccCCCCccc-ccccCCCChHHHH----HHhhh-cc
Q 008433 206 NFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-SV 273 (565)
Q Consensus 206 NF~gR~g~~------~~~~yLaSP~lvaA~AlaG~i~~d~~t~pl~~~~~g~~v-~l~d~~P~~~ei~----~~~~~-~~ 273 (565)
=|.+|+.|. ++++||+|| |.+++.++.|+.++.+++||....|..| +|.|+| +.+|+. +.+.. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 478899998 788999999 6689999999999999999999999999 899999 556666 55555 56
Q ss_pred CchhHHhhhhhccCCCccccccCCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCcccceEEeecCCCcccccccCCC
Q 008433 274 LPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAG 353 (565)
Q Consensus 274 ~~~~~~~~y~~i~~g~~~w~~~~~~~~~~~~wd~~st~i~~~P~~~~~~~~~~~~~~i~~~~vl~~~gD~itTDhIsPaG 353 (565)
..++|.+.|+....||+.|+++ ++.|.+.+-+..+|| .++.|++ + ++++||||+||||||+
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~----------~~~~i~g-~-v~~~~~nIdTD~IiPa- 185 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPA----------LAEKLTV-T-VFKVTGETNTDDLSPA- 185 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCC----------CCSCEEE-E-EEEEEEEEEHHHHSCG-
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCC----------CCceEEE-E-EEecCCCCchhccCch-
Confidence 6889999999999999999964 789988774443333 3345644 4 5778999999999999
Q ss_pred CCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCceeccCCCccchhhhHHHHHHhcC
Q 008433 354 SIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEG 433 (565)
Q Consensus 354 ~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g 433 (565)
+||.. |.+.+.+.++.|.++|.. + .|. ++ ++... +....+++..|
T Consensus 186 ---------~~l~~--------------~~d~~~~a~~lf~~~r~~--~-----~p~---f~-~~~~~-~~~i~~~~~~G 230 (865)
T 1l5j_A 186 ---------PDAWS--------------RPDIPLHALAMLKNAREG--I-----EPD---QP-GVVGP-IKQIEALQQKG 230 (865)
T ss_dssp ---------GGGGG--------------TTSHHHHGGGTTCSCBTT--B-----CCS---BT-TTBCS-HHHHHHHHTTS
T ss_pred ---------hhhhc--------------CCCHHHHHHHHhhccccC--C-----Ccc---cc-ccccc-hhhhhhhhcCC
Confidence 78854 456677888999976621 0 010 00 11111 23345676655
Q ss_pred CceEEEecCCcCCCCchhhhhhhh-------------hhcCceEEEecchHHHHhhhhccCCccceecCCCccccccCCC
Q 008433 434 HDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLT 500 (565)
Q Consensus 434 ~~~iIVAG~nyG~GSSRE~AA~~~-------------~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~~~~~l~l~ 500 (565)
..|+|+|+|||||||||||+|++ +.+| ++|||+||||||++|++|+|+|||+++ .+.+ .
T Consensus 231 -~~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~l--~ 302 (865)
T 1l5j_A 231 -FPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSNL--N 302 (865)
T ss_dssp -SCEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTTC--C
T ss_pred -CEEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hhhc--C
Confidence 35899999999999999999999 9999 999999999999999999999999985 3444 4
Q ss_pred CCeEEEEEcCCCccccCCCceEEEEcCCCeE-EEEEeeCCCHHHHHHHHhcCHHHHHHHHhhhh
Q 008433 501 GHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 563 (565)
Q Consensus 501 ~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~yv~~~~~~~ 563 (565)
.++.++|++.. | +|+ ...+|++ +.|. ++++..++++++||++||++++.+..
T Consensus 303 ~Gd~i~Idl~~-------g-~I~-~~~~g~~~~~f~--~~p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 303 MGDVIDVYPYK-------G-EVR-NHETGELLATFE--LKTDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp TTCEEEEETTT-------T-EEE-ETTTCCEEEECC--CSCTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-------C-EEE-EcCCCeEEEEEE--eCCHHHHHHHHcCChhhhhhcchHHH
Confidence 67788998853 2 333 2245665 6665 44899999999999999999987643
No 8
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=3.5e-38 Score=307.71 Aligned_cols=180 Identities=22% Similarity=0.342 Sum_probs=130.2
Q ss_pred CCCCCCCCCCCCCCCCc--ccceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhccc
Q 008433 315 PPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 392 (565)
Q Consensus 315 ~P~~~~~~~~~~~~~~i--~~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~ 392 (565)
.|||+++......-+.+ ..++|+.+.|||||||||||| +||+. +++++ |.+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGGT
T ss_pred ccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHH-------------HHHHH
Confidence 45666654433322222 367888888999999999999 89974 44444 48999
Q ss_pred ccccchhccccCCccCCceeccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHH
Q 008433 393 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 472 (565)
Q Consensus 393 f~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFar 472 (565)
|+++|+.|+ +|+++|. ++.+ ..+|+. +.|||||+|||||||||||+|+++.+||+||||+||||
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~-~~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFN-QPEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGG-SGGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred hhccccccc--CCCCCCC----------cccc-chhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHH
Confidence 999998875 4444431 1212 135653 78999999999999999999999999999999999999
Q ss_pred HHhhhhccCCccceecCCCcccccc-CCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhc
Q 008433 473 IHRSNLVGMGIIPLCFKPGEDAETH-GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 473 Ih~~Nlin~GiLPL~f~~~~~~~~l-~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aG 550 (565)
||++||+|+|||||+|+++ +++.| ....++.++|+++. ++|+ ..+| ++.+. + ++..+++|.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~-~~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKE-VRDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHH-HHHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEeCHH-HHHHHhccCCCCEEEEECCC--------CEEE--ECCc-eEEEe--C-CHHHHHHHHcC
Confidence 9999999999999999643 45555 12467788999864 3443 3456 66666 3 79999999988
No 9
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=100.00 E-value=3.5e-34 Score=269.92 Aligned_cols=155 Identities=23% Similarity=0.293 Sum_probs=119.8
Q ss_pred cceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCcee
Q 008433 333 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 412 (565)
Q Consensus 333 ~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~ 412 (565)
..+++.+.||||+||+|+|+ +||+. .+.+.|.+++|.++|....|
T Consensus 11 ~G~~~~l~~dnIdTD~IiPa----------~~L~~---------------~~~~~l~~~~f~~~R~~p~F---------- 55 (171)
T 3h5j_A 11 SGIGVPLRRSNVDTDQIIPA----------VFLKR---------------VTRTGFEDGLFAGWRSDPAF---------- 55 (171)
T ss_dssp EEEEEEECCCSCCHHHHSCG----------GGTTC---------------CSCSCCGGGTTTTGGGSTTS----------
T ss_pred EEEEEEccCCccCcccCCch----------hhcCC---------------CCHHHHHHHhhccCcCCcCc----------
Confidence 67888889999999999999 78874 24456688999998732211
Q ss_pred ccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCc
Q 008433 413 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 492 (565)
Q Consensus 413 ~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~ 492 (565)
+.+ ..+|+ .+.|||||+|||||||||||+|+++.+|++||||+||+|||++|++|+|+|||++++.
T Consensus 56 ---------~~~-~~~~~---~~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~- 121 (171)
T 3h5j_A 56 ---------VLN-LSPFD---RGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQD- 121 (171)
T ss_dssp ---------GGG-STTGG---GCCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHH-
T ss_pred ---------ccc-ccccC---CCcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHH-
Confidence 111 13455 2689999999999999999999999999999999999999999999999999999743
Q ss_pred ccccc----CCCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhc
Q 008433 493 DAETH----GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 493 ~~~~l----~l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aG 550 (565)
.++.| ....++.++|+++. ++|+ . +|++++|.+ .+..++.|.+|
T Consensus 122 ~~~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 122 DVELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCcEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHhC
Confidence 34444 11457788999864 2343 2 577777775 68888888776
No 10
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=100.00 E-value=7.6e-34 Score=274.55 Aligned_cols=163 Identities=21% Similarity=0.330 Sum_probs=121.6
Q ss_pred cceEEeecCCCcccccccCCCCCCCCChhhhHHHHcCCCCcCCccccCCCCchhhhhcccccccchhccccCCccCCcee
Q 008433 333 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 412 (565)
Q Consensus 333 ~~~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~ygsrR~N~evm~rg~f~n~r~~n~~~~~~~g~~t~ 412 (565)
..+++.+-+|||+||+|+|+ +||+. +++.+ |.+++|.++|+.. .|...+
T Consensus 11 ~G~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~-------------lg~~~f~~~R~~~---~g~~~~--- 59 (203)
T 3q3w_A 11 KGIACPLEYANIDTDQIIPK----------QFLLA--VSKQG-------------FGKHLFHDLRYLD---DKESVL--- 59 (203)
T ss_dssp EEEEEEECCSSCBHHHHSCG----------GGCBS--SCSSC-------------SGGGTTHHHHBSS---SSSCSB---
T ss_pred EEEEEECCCcccChhhcchH----------HHcCc--CCHHH-------------HHHhhhhhhhccc---cCCCCC---
Confidence 55676666699999999999 89864 34443 5889999998642 122100
Q ss_pred ccCCCccchhhhHHHHHHhcCCceEEEecCCcCCCCchhhhhhhhhhcCceEEEecchHHHHhhhhccCCccceecCCCc
Q 008433 413 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 492 (565)
Q Consensus 413 ~~p~g~~~~i~~~a~~y~~~g~~~iIVAG~nyG~GSSRE~AA~~~~~LGv~AVIA~SFarIh~~Nlin~GiLPL~f~~~~ 492 (565)
...++.+. .+|+ .+.|||||+|||||||||||+|+++.+||+||||+||||||++|++|+||||+++++.
T Consensus 60 -----~pdF~~n~-~~~~---~~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~- 129 (203)
T 3q3w_A 60 -----NMDFNLNK-KEYQ---NSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKD- 129 (203)
T ss_dssp -----CTTSGGGS-GGGT---TEEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHH-
T ss_pred -----CCChhhcc-cccC---CCCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHH-
Confidence 11223222 3465 3789999999999999999999999999999999999999999999999999999753
Q ss_pred cccccC----CCCCeEEEEEcCCCccccCCCceEEEEcCCCeEEEEEeeCCCHHHHHHHHhc
Q 008433 493 DAETHG----LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 550 (565)
Q Consensus 493 ~~~~l~----l~~~e~~~i~l~~~~~~~~~g~~i~v~~~~g~~~~~~~~~~t~~e~~~~~aG 550 (565)
..+.|. ...++.++||++. ++|+ . +|+++.+.+ ++..++.|.+|
T Consensus 130 ~~~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 130 EVLEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCCEEEEECCC--------CEEE--E-CCEEEEEEe---CHHHHHHHHcC
Confidence 234441 1456788999864 3343 2 577787774 68889999888
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=66.99 E-value=4.2 Score=35.19 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=27.0
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 100 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 100 ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
|++|++|..|----.| ||+.|.+.|.+.|..++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 5899999999877766 78899888999999887
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=66.05 E-value=4.7 Score=34.87 Aligned_cols=33 Identities=39% Similarity=0.519 Sum_probs=28.4
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 100 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 100 ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
|++|++|..|----.| ||+.|.+.|.+.|..++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTYM-AAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 5899999999877665 78899888999999877
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=58.85 E-value=5.2 Score=34.86 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=28.7
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 99 VIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 99 ~ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
.|++|++|..|----.| ||+.|.+.|.+.|..++
T Consensus 7 kIvaVTaCptGiAHTyM-AAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 7 KLIALCACPMGLAHTFM-AAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEEESSCHHHHHH-HHHHHHHHHHHTSSEEE
T ss_pred cEEEEEcCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 36899999999777665 78888888999999877
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=55.40 E-value=7.3 Score=33.63 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=28.0
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHhcCCccC
Q 008433 100 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 133 (565)
Q Consensus 100 ia~IgSCTN~s~~dl~~aA~llak~A~~~G~kv~ 133 (565)
|.+|++|..|---..| ||+.|.+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 5899999999877665 78888888989999877
Done!