Query 008434
Match_columns 565
No_of_seqs 211 out of 362
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 12:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 99.8 4.6E-21 1E-25 178.7 7.5 141 238-398 3-160 (160)
2 KOG2261 Polycomb enhancer prot 99.7 4.5E-17 9.8E-22 182.0 5.6 177 327-540 1-179 (716)
3 KOG2261 Polycomb enhancer prot 99.6 5.8E-16 1.3E-20 173.2 6.9 506 17-556 187-709 (716)
4 KOG0954 PHD finger protein [Ge 98.5 3.5E-08 7.6E-13 110.6 3.2 111 287-400 132-251 (893)
5 KOG0955 PHD finger protein BR1 98.3 6.5E-07 1.4E-11 105.1 5.7 167 217-400 29-202 (1051)
6 COG5141 PHD zinc finger-contai 96.5 0.0017 3.7E-08 71.4 3.2 43 353-400 130-172 (669)
7 KOG0954 PHD finger protein [Ge 78.4 1.8 4E-05 50.5 3.4 26 421-446 499-525 (893)
8 KOG0955 PHD finger protein BR1 46.4 68 0.0015 39.6 8.3 29 422-450 467-496 (1051)
9 COG2896 MoaA Molybdenum cofact 42.5 15 0.00033 39.4 2.0 65 329-397 4-85 (322)
10 COG4325 Predicted membrane pro 29.5 23 0.00049 39.3 0.8 36 2-42 130-165 (464)
11 PF06252 DUF1018: Protein of u 25.8 80 0.0017 28.6 3.5 39 358-401 1-40 (119)
12 PF07310 PAS_5: PAS domain; I 25.1 41 0.00089 30.9 1.6 26 423-448 4-29 (137)
13 PF00046 Homeobox: Homeobox do 23.1 3.3E+02 0.0071 20.8 6.1 51 381-439 5-55 (57)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.83 E-value=4.6e-21 Score=178.69 Aligned_cols=141 Identities=31% Similarity=0.395 Sum_probs=101.6
Q ss_pred eeEEEE--EecccccchhcccccccCCCccccc--chhhccCCCCcccccCCccchhhhHhHHHHhhhccCCCCC-----
Q 008434 238 EWHLVV--KKDGETRYSFKAQRIMRPSSFNRFT--HAILWAGDDNWKLEFSNRQDWLDFKDLYKECSDRNAQVSV----- 308 (565)
Q Consensus 238 ~~ri~I--kl~~~t~~~~~aq~~~~~~~sNk~t--~~~~w~~~~~wklEf~dr~~~~~fK~~~eEe~E~nlqaa~----- 308 (565)
.++|.| +|.++...++... ...++++|+.+ +..+-...+.=.+ ...++++|+|++.
T Consensus 3 ~~~ld~~~~l~I~~~~d~~~~-~~~~~~~~~~~~~~~~~~gv~~~~~~--------------~~~e~e~~~q~~~~~~~~ 67 (160)
T PF10513_consen 3 PRRLDIKKPLPIFREEDLDDL-DESEDSSNKNQAVPQSPTGVEKEEKL--------------SKQEWEKHLQKPISASQN 67 (160)
T ss_pred CCCCCCCCCeeEEechhcccc-cccccccccccccccccCCccchhhc--------------cccccccccccccchhhh
Confidence 456677 8888887777666 67778777764 2221111111000 2234567776542
Q ss_pred --------CCCcCCCceeeecCccCCCCCCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHhhhhhcccccCC
Q 008434 309 --------SKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELH 380 (565)
Q Consensus 309 --------~~~IPtP~v~~V~~Yd~~Y~~~F~rP~sYIRfs~eEv~~aLd~~~veYDMDEEDEeWL~~~N~k~~~~~dg~ 380 (565)
...||+|.++.++ |+..|...|.+|.+||||+..... .++. .|+||||++|+.||+.+|+++ +..+.
T Consensus 68 ~~~~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~e-~~~~-~veYDmDeeD~~wL~~~N~~r--~~~~~ 142 (160)
T PF10513_consen 68 SKSKKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSVE-DLDE-GVEYDMDEEDEEWLELLNKKR--KSDGL 142 (160)
T ss_pred hhcccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCHH-Hhcc-CcCCCCchHHHHHHHHHHHHh--hhcCC
Confidence 3569999999878 999999999999999999941111 1222 799999999999999999986 44667
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 008434 381 EHVSEDTFELIVDAFEKA 398 (565)
Q Consensus 381 ~~ISED~FE~IMDrFEK~ 398 (565)
.+||++.||.|||+|||+
T Consensus 143 ~~ls~~~FE~~md~lEke 160 (160)
T PF10513_consen 143 EPLSEEDFEIIMDRLEKE 160 (160)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 899999999999999985
No 2
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.66 E-value=4.5e-17 Score=182.01 Aligned_cols=177 Identities=21% Similarity=0.210 Sum_probs=138.2
Q ss_pred CCCCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccCCCCCC
Q 008434 327 NTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDY 406 (565)
Q Consensus 327 Y~~~F~rP~sYIRfs~eEv~~aLd~~~veYDMDEEDEeWL~~~N~k~~~~~dg~~~ISED~FE~IMDrFEK~sy~sp~~i 406 (565)
|+.+|+.|...|+...- .++.+++.||||++||.||.. + ..+.+..||.|+|++|+.+...+
T Consensus 1 y~~~~k~~r~~~~~~~~----~l~~~~p~yd~D~~de~~~s~---~--------~~s~~~~~e~~~dR~e~~s~~~~--- 62 (716)
T KOG2261|consen 1 YPKAAKMPRQLIHGQPI----WLDREKPRYDHDSEDEDFLSV---Q--------MESKPLKFERMRDRLEKCSSHQK--- 62 (716)
T ss_pred CCcccccchhhhccccc----ccCCCCCcccccchhHHHhhh---c--------ccccchhHHHHhcccccCCccce---
Confidence 67899999999988763 277889999999999999998 2 26889999999999999986443
Q ss_pred CCHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhCCc-cccccccCCCCCCCCCCCCceecccc-ccccCCCCCCCCCCcc
Q 008434 407 SNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRAA-LLRVFQGRQPKKPSLIPKPALRKRRS-FKRQASQPGRGKPPVV 484 (565)
Q Consensus 407 l~~eea~~llkelg~~~v~kaVYeYWk~KR~k~GkP-LLRrFq~~~ekdd~~~~dPYVcFRRR-EkrQtRKTRR~d~~s~ 484 (565)
+..++++..+.+ .+.....||+||..||...-.| |++.... -.++++..++||+.|||| |+||+||||++|+.||
T Consensus 63 i~l~edk~~l~~--dd~~~v~~~e~~veK~~~~e~~~L~p~v~~-~~~~~~~s~~py~~~rr~tekmqtrkn~~nd~aSy 139 (716)
T KOG2261|consen 63 IYLEEDKKDLDE--DDQRSVEVYEYWVEKREEKEVPSLIPPVKT-EKRDGSASNKPYVAFRRRTEKMQTRKNRKNDEASY 139 (716)
T ss_pred ecchhhhhcccc--ccceeeeeeehhhhhhhhhccccccCcccc-ccCCccccCCchhhhhhhhhccccccccccchHHH
Confidence 333556665555 5678889999999999999777 6664443 456677889999999986 9999999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008434 485 LLPEVVTQQDALEEQNAMRRVEEAKASAKRSLEEAVLKRQRAQLLMQNADLATYKA 540 (565)
Q Consensus 485 ~~~~~~aqrd~~e~~~~~~rl~~a~~~A~~~~e~a~lkR~Raq~l~~~adlaiyka 540 (565)
+ .+++++...+.|..-+|+ +..|+-.+..|-.-.+.|...
T Consensus 140 e---------------k~l~~~~dl~~a~t~~em-~~~~e~tk~~L~~~t~ei~~k 179 (716)
T KOG2261|consen 140 E---------------KMLKLRRDLSRAYTILEM-EKRREKTKRELLEKTSEISEK 179 (716)
T ss_pred H---------------HHHHHHHhhhHHHHHHHH-HHhhhhhHHHhhcchhhhhhh
Confidence 6 577788888877776776 566666666555444444443
No 3
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.61 E-value=5.8e-16 Score=173.21 Aligned_cols=506 Identities=21% Similarity=0.145 Sum_probs=354.6
Q ss_pred CCCccccceeeeecccCceeeeeecccCcchHHHHHHHHHHHHhcCccc-ccCCCC--CCCCCccccccccccccccc-c
Q 008434 17 DPPIARTGMCRIFGTMQLIPMFSLDFSAVPSCFMYIHHCMLVRFMRPPS-VNSSAS--EDDSSEEEDVDYVCESKTVT-P 92 (565)
Q Consensus 17 ~~~~~~~g~c~~~g~~~~~p~~s~~fsa~p~~f~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~d~~~~~~~~~-~ 92 (565)
+-++-.-+.|+.+|+ +.|+|+.+|+-+|..++..|.++.++..-.+| ...... .-.++.+.+.- -....-.. |
T Consensus 187 ~~~~~s~~~~~~~~~--~~P~~~~~~~i~~~s~~~~~~~l~~~~~~~~~~~~~~~y~r~k~~~~~~~~~-~~~~~Q~~pp 263 (716)
T KOG2261|consen 187 EGEMSSEVEPERKGA--YKPLLSAPFAIILLSPMDTMEALKLRVLKESFFSSKYDYWREKRKIEGGPKA-QMTSQQPLPP 263 (716)
T ss_pred ccccccccchhhhhc--cCccccCcchhhcCCHHHHHhhhhhhhhhhhhhhHHHHHHhhhccccCCchh-hhhhhcCCCC
Confidence 444556789999999 89999999999999999999999999998887 111111 11122222200 00001111 3
Q ss_pred cccCCCCeeeecCCcccccccccc----hhhccccchhhhhhhhhhhcccccCCCCccccccccccchhhhhhcccCCCC
Q 008434 93 VVDNSVNKVALHPSVRSSKLAARN----VQYRSSLNSRAIQKRRSSLRRRRARNPSLIGSQKASGALVSDLTSCRKSSIP 168 (565)
Q Consensus 93 ~~~~~~~~~~~~~~v~~~~~~g~~----~~~~~~l~~~~~q~rrss~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (565)
..+..+..+.+|++++-+++++|+ .|||......-.+.||.+...+.+++-...++...++....|+- .++.
T Consensus 264 v~~~~~yv~fr~r~~r~~~~trr~~~~s~~~een~~e~~~~~Rr~~~~~~~a~~l~~~~~k~e~~~~d~~~s-~~k~--- 339 (716)
T KOG2261|consen 264 VFDADPYVCFRRRESRHSRKTRRSSLNSEQEEENDAESVFAFRRRRGCLYYAQRLLEKAHKRENKKEDFDPD-KRKY--- 339 (716)
T ss_pred CCCCCCceecccccccchhhccccccchhhhhhhcccchHHHhhhhhccccchhHHHhhcchhccccccCcc-hhhh---
Confidence 446788899999999999999999 89999999999999999999999998888777443443333332 2222
Q ss_pred CCcccchhhhhhhcc--cccchhhhchhhhhHhhhhccCcceeecceEEEecCceeeecCcEEEEEeCCCceeEEEEEec
Q 008434 169 SSSAVSKSKLRSSLQ--HSSVLSIKEVSSTVDSLMLDLDRSCCCVSILVMESDRCCRVEGANVILEMSHSKEWHLVVKKD 246 (565)
Q Consensus 169 ~~~~~s~~k~~~~~~--~~~~~~~~e~~~~~~~~~~~~~s~~c~an~li~~~dr~~re~ga~V~le~~dg~~~ri~Ikl~ 246 (565)
..-+++..+.||+.. ..++.+=.= ....+....-.+..+|.++......++|=|+.+..+.+..+.++.|....+ +
T Consensus 340 r~~lt~~~~~rr~i~~~rrr~g~g~r-v~~dr~~~~~dd~~~~~~~~~~~~~~~~~q~~~~~~r~~~sn~k~~~~~~~-d 417 (716)
T KOG2261|consen 340 RTCLTKLKKPRRCIGFARRRAGRGGR-VIPDRKPNNEDDFISSIDTTMTQSSLLRQQERTFSQRLSDSNLKEEQLASS-D 417 (716)
T ss_pred heeeeeccchhHHHHHHHHhhccCCc-cccccCCcCcCCcccccccccccchhcccchhhhhhhccccccchhhcccc-c
Confidence 235666667776663 333333111 122234455678889999999999999999999999999999999999999 9
Q ss_pred ccccchhcccccccCCCcccccchhhccCCCCcccccCCccchhhhHhHHHHhhhccCCCCCCCCc-CCCceeeecCccC
Q 008434 247 GETRYSFKAQRIMRPSSFNRFTHAILWAGDDNWKLEFSNRQDWLDFKDLYKECSDRNAQVSVSKVI-PIPGVCEVLGYED 325 (565)
Q Consensus 247 ~~t~~~~~aq~~~~~~~sNk~t~~~~w~~~~~wklEf~dr~~~~~fK~~~eEe~E~nlqaa~~~~I-PtP~v~~V~~Yd~ 325 (565)
+.-.+++..|--+++...+..|+...|. +.|..++.++..|.-|+..+.+|++..........+ +++....-..|..
T Consensus 418 ~s~~~~~i~q~~~r~~~~~~~~l~d~~~--~E~~~r~~~~~~~dk~~~~~~~~~~~~s~~~~~~~~~g~t~~~~~~~~~~ 495 (716)
T KOG2261|consen 418 LSQILSNIKQERLRPFQRRLINLQDVDN--DEWTSRKCDREVPDKFKDAYIDCYENTSDKQSSRVGPGITESQGQTPFSQ 495 (716)
T ss_pred cccccccchheeecccccCccchhhccc--ccccchhhhhhcchhhccccccccccccccccccccCCccccCCCchHhh
Confidence 9999999999779999999999999998 999999999999999999999999988776655666 4444333333444
Q ss_pred CCCCCCCCCCccEEeehhhhhHhhhCCCcccCC--ChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccCCC
Q 008434 326 SNTVPFCRPDSYISVNVDEVSRALAKRTANYDM--DSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSP 403 (565)
Q Consensus 326 ~Y~~~F~rP~sYIRfs~eEv~~aLd~~~veYDM--DEEDEeWL~~~N~k~~~~~dg~~~ISED~FE~IMDrFEK~sy~sp 403 (565)
..+-.+..+.+|+-+...+..........-||+ +++|..+|... ...|+...+.+|+..+..+
T Consensus 496 ~~~~~~~~~~s~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~l~~q---------------~~~~~~~~~~~~~~~~~~~ 560 (716)
T KOG2261|consen 496 NAPMQSQPLVSLQQLNASESLSASSNSIALYDSTLNDEDDKYLDRQ---------------RAAFGASLDVFEKYHLHVS 560 (716)
T ss_pred hhhhhccchhhhhhhccchhhhccccchhhhhhhhcCccchhhHHH---------------HHHHhhhhhcchhhccccc
Confidence 444445555668888765544344444556664 45555555543 3457777888888554322
Q ss_pred CC-CCCHHHHHHHHHh-hChhHHHHHHHHHHHHHHHhhCCccccccccCCCCCCCCCCCCceeccccccccCCCC-CCCC
Q 008434 404 DD-YSNEEAAVNLCLE-LGQKEVVLAVYNHWKQKRKQKRAALLRVFQGRQPKKPSLIPKPALRKRRSFKRQASQP-GRGK 480 (565)
Q Consensus 404 ~~-il~~eea~~llke-lg~~~v~kaVYeYWk~KR~k~GkPLLRrFq~~~ekdd~~~~dPYVcFRRREkrQtRKT-RR~d 480 (565)
.. ......+-..... .+.......+.+||..+|.....|+..-++..+.+| ..|-...++.++.+-..+ ++..
T Consensus 561 r~~~~~~~~~~~~~~~~p~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~v~~~d----s~~~~~~~~~~~~~~~~~~~~~~ 636 (716)
T KOG2261|consen 561 RDDKPDVLGMNNVNGSYPPSAESKELLSDNWLAKRAQRSSPLNSDSQTVSVKD----SKPHFRKKHSFKALGTELGGKLP 636 (716)
T ss_pred hhcccccccCCCccccccCcccccccccccchhhhhhcCCCcccccccccccc----ccceecccccccccccccccccC
Confidence 11 0000000000000 123456778889999999999999998888877766 333444445566654333 3333
Q ss_pred CCccccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccch
Q 008434 481 PPVVLLPEVVTQQ-DALEEQNAMRRVEEAKASAKRSLEEAVLKRQRAQLLMQNADLATYKATMALRIAEAAQVAESA 556 (565)
Q Consensus 481 ~~s~~~~~~~aqr-d~~e~~~~~~rl~~a~~~A~~~~e~a~lkR~Raq~l~~~adlaiyka~~al~~aea~~~s~~~ 556 (565)
+. .+++++.- .+.+...+..+.+++..-|..+.++|..++.+|+.+-.+++||.++++=++ +|||++-..+.
T Consensus 637 ~~---~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 709 (716)
T KOG2261|consen 637 QE---SPRLVAASAVAPVEEDAPMNGEEATRLAAPSPETALRDAARAQKLDENAKLASSEAVSSI-IAEAIESEQSS 709 (716)
T ss_pred CC---chhhhhhhhcchhhhhhhhccccchhhcccChhHHHHHHHHHHHHHhhccccchhHHHHH-HHHHHhhhhhc
Confidence 32 23333333 344444588889999999999999999999999999999999999999999 99999765443
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.55 E-value=3.5e-08 Score=110.60 Aligned_cols=111 Identities=31% Similarity=0.484 Sum_probs=90.5
Q ss_pred cchhhhHhHHHHhhhccCCCCC-CCCcCCCceeeecCccCCCCCCCCCCCccEEeehhhh--------hHhhhCCCcccC
Q 008434 287 QDWLDFKDLYKECSDRNAQVSV-SKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEV--------SRALAKRTANYD 357 (565)
Q Consensus 287 ~~~~~fK~~~eEe~E~nlqaa~-~~~IPtP~v~~V~~Yd~~Y~~~F~rP~sYIRfs~eEv--------~~aLd~~~veYD 357 (565)
..+..|.+.++.+||.++|.++ ...||+|.|+.+...-+ -...|.+|+.||..+..++ +..+.++.|.||
T Consensus 132 ~~y~~~~D~wk~ewekgvQvpaspd~lpqp~v~~dse~v~-~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcryd 210 (893)
T KOG0954|consen 132 DEYLDFADPWKQEWEKGVQVPASPDTLPQPSVRVDSEDVQ-PETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYD 210 (893)
T ss_pred cceeecCCccchhhhccccccCCCCcCCCcceeccchhcc-hhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcc
Confidence 3456666777777899999875 57899999988754332 2368999999999987331 456777899999
Q ss_pred CChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhccc
Q 008434 358 MDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYF 400 (565)
Q Consensus 358 MDEEDEeWL~~~N~k~~~~~dg~~~ISED~FE~IMDrFEK~sy 400 (565)
+|.-|.+||+.+|..+ .-.|...+.+-.||+||..||..+|
T Consensus 211 id~~d~awL~~~n~e~--~~~G~~~l~~~~~eRiieelE~~c~ 251 (893)
T KOG0954|consen 211 IDDMDPAWLQLVNEER--AEMGSLELDEGTFERIIEELERRCK 251 (893)
T ss_pred cccccHHHHHHhcchH--HhhCCcccchHHHHHHHHHHHHHHH
Confidence 9999999999999988 4467789999999999999999885
No 5
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.30 E-value=6.5e-07 Score=105.11 Aligned_cols=167 Identities=21% Similarity=0.203 Sum_probs=110.4
Q ss_pred ecCceeeecCcEEEEEeCCCceeEEEE--EecccccchhcccccccCCCcccccchhhccCCCCccccc--CCccchhhh
Q 008434 217 ESDRCCRVEGANVILEMSHSKEWHLVV--KKDGETRYSFKAQRIMRPSSFNRFTHAILWAGDDNWKLEF--SNRQDWLDF 292 (565)
Q Consensus 217 ~~dr~~re~ga~V~le~~dg~~~ri~I--kl~~~t~~~~~aq~~~~~~~sNk~t~~~~w~~~~~wklEf--~dr~~~~~f 292 (565)
..|+=+=.++-.+++++ +|+.++|++ ++..+..+..+.+ ++++|.+|+.|-..+-..-+.-..++ +.+.-..
T Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 104 (1051)
T KOG0955|consen 29 RNDRFYAQATRMVELDT-EGRVFQISIFPPLGKVNEDLITTE-EIFPNKSVHVNKNWERPSFDIQEKENKNNERPTLN-- 104 (1051)
T ss_pred cCceEEecccccccccc-ccceeecccCCcccccchhhcccc-cccccccccccccccCCccchhhhccccccccchh--
Confidence 55666667777889999 999999999 8999999999999 99999999996443222222222222 1111111
Q ss_pred HhHHHHhhhccCCCC--CCCCcCCCceeeecCccCC-CCCCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHh
Q 008434 293 KDLYKECSDRNAQVS--VSKVIPIPGVCEVLGYEDS-NTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKF 369 (565)
Q Consensus 293 K~~~eEe~E~nlqaa--~~~~IPtP~v~~V~~Yd~~-Y~~~F~rP~sYIRfs~eEv~~aLd~~~veYDMDEEDEeWL~~~ 369 (565)
.+++-. ....||.=....+..++.. -...-.+|..|+++..+.- ..++. .++||||++|..||..+
T Consensus 105 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~-e~~y~~de~d~~wl~~~ 173 (1051)
T KOG0955|consen 105 ---------KLSKDISPNAYTIPRSPQHKVREFELLRPMDAPPRPNFYYDEIEKSK-ETLDE-EVEYDLDEEDYSWLDIM 173 (1051)
T ss_pred ---------hcccccCccccccccChhhhheeccccccccCCCCCCcchhhhccch-hhhcc-ccccchHHHHHHHHhhh
Confidence 111111 1112222222233333332 2356667888887766321 12444 68999999999999999
Q ss_pred hhhhcccccCCCCCCHHHHHHHHHHHHhccc
Q 008434 370 NNEFVTENELHEHVSEDTFELIVDAFEKAYF 400 (565)
Q Consensus 370 N~k~~~~~dg~~~ISED~FE~IMDrFEK~sy 400 (565)
|..+ ...+...++.+.||.+||++||+++
T Consensus 174 n~~~--~~~~~~~v~~~~~~~~~dr~eke~~ 202 (1051)
T KOG0955|consen 174 NELR--TRNGVFDVSIDTFELLVDRLEKESY 202 (1051)
T ss_pred hHHH--hhcCCccccccchhhhhhhHHHHHH
Confidence 9887 3466789999999999999999773
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.51 E-value=0.0017 Score=71.36 Aligned_cols=43 Identities=42% Similarity=0.800 Sum_probs=38.3
Q ss_pred CcccCCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhccc
Q 008434 353 TANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYF 400 (565)
Q Consensus 353 ~veYDMDEEDEeWL~~~N~k~~~~~dg~~~ISED~FE~IMDrFEK~sy 400 (565)
.|.||||+-|+-||.=+|+..- ..++|++-||++|++||+++|
T Consensus 130 ~v~YdlDe~D~m~l~Ylne~~~-----~e~vS~e~fEii~t~lE~EWf 172 (669)
T COG5141 130 SVIYDLDEYDTMWLRYLNESAI-----DENVSEEAFEIIVTRLEKEWF 172 (669)
T ss_pred ceeecccchhHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHH
Confidence 6899999999999999997652 257999999999999999985
No 7
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=78.35 E-value=1.8 Score=50.48 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHhhC-Cccccc
Q 008434 421 QKEVVLAVYNHWKQKRKQKR-AALLRV 446 (565)
Q Consensus 421 ~~~v~kaVYeYWk~KR~k~G-kPLLRr 446 (565)
.+.++-+||+||+.||+..+ +|||+.
T Consensus 499 ~e~~vs~iynywklkrks~~n~~lipp 525 (893)
T KOG0954|consen 499 PEFAVSAIYNYWKLKRKSRFNKELIPP 525 (893)
T ss_pred chHHHHHHHHHHHHhhhccCCCcCCCC
Confidence 45688999999999999996 999963
No 8
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=46.40 E-value=68 Score=39.65 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHhh-CCccccccccC
Q 008434 422 KEVVLAVYNHWKQKRKQK-RAALLRVFQGR 450 (565)
Q Consensus 422 ~~v~kaVYeYWk~KR~k~-GkPLLRrFq~~ 450 (565)
..++..|..||..||..+ |.||++++|..
T Consensus 467 ~~~~~~i~~~w~~kR~~r~g~pLl~~lq~~ 496 (1051)
T KOG0955|consen 467 PQFMDRICKYWYLKRLSRNGAPLLGRLQSL 496 (1051)
T ss_pred chhhhhhhhhHHHHHHhhCCcchhhhhhhh
Confidence 458999999999999766 89999988754
No 9
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=42.49 E-value=15 Score=39.41 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCCCCCccEEeehhhhhHhhhCCCcccCCChhhHHHHHHhh----hh----------hc---ccccCCCCCCHHHHHHH
Q 008434 329 VPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFN----NE----------FV---TENELHEHVSEDTFELI 391 (565)
Q Consensus 329 ~~F~rP~sYIRfs~eEv~~aLd~~~veYDMDEEDEeWL~~~N----~k----------~~---~~~dg~~~ISED~FE~I 391 (565)
+.|.+|-.|+|.+-++.+ +-.|.|+|-+.+..|+..-+ ++ .+ .+=+|..++=..+|..|
T Consensus 4 D~~gR~~~~LRiSvTdrC----NfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eI 79 (322)
T COG2896 4 DRFGRPVRYLRISVTDRC----NFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEI 79 (322)
T ss_pred cccCCEeceEEEEEecCc----CCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHH
Confidence 579999999999985543 23799999999777776311 00 00 01134566667777777
Q ss_pred HHHHHh
Q 008434 392 VDAFEK 397 (565)
Q Consensus 392 MDrFEK 397 (565)
+.++-+
T Consensus 80 i~~l~~ 85 (322)
T COG2896 80 IARLAR 85 (322)
T ss_pred HHHHhh
Confidence 777765
No 10
>COG4325 Predicted membrane protein [Function unknown]
Probab=29.49 E-value=23 Score=39.30 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHhcCCCccccceeeeecccCceeeeeecc
Q 008434 2 LSIFICAFLWSILYQDPPIARTGMCRIFGTMQLIPMFSLDF 42 (565)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~c~~~g~~~~~p~~s~~f 42 (565)
|.+|+|+|.++++.. ++=|-++-|-.+|+|-.||--
T Consensus 130 La~FlctFvysl~vl-----rtvg~e~d~~g~FIp~~avtv 165 (464)
T COG4325 130 LAIFLCTFVYSLGVL-----RTVGEERDGQGAFIPKVAVTV 165 (464)
T ss_pred HHHHHHHHHHHHHHH-----HHhhhccCccccceehHHHHH
Confidence 678999999999875 344566777788999887753
No 11
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=25.79 E-value=80 Score=28.59 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=28.9
Q ss_pred CChhhH-HHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcccC
Q 008434 358 MDSEDE-EWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFC 401 (565)
Q Consensus 358 MDEEDE-eWL~~~N~k~~~~~dg~~~ISED~FE~IMDrFEK~sy~ 401 (565)
||||+. ++|.....+.. ...||..+++.+|+.|++-.|-
T Consensus 1 lddd~YR~~L~~~~Gk~S-----~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSS-----SKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred CCHHHHHHHHHHHhChhh-----HHHCCHHHHHHHHHHHHHccCc
Confidence 677776 45565544432 3589999999999999998774
No 12
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=25.14 E-value=41 Score=30.91 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhCCccccccc
Q 008434 423 EVVLAVYNHWKQKRKQKRAALLRVFQ 448 (565)
Q Consensus 423 ~v~kaVYeYWk~KR~k~GkPLLRrFq 448 (565)
.-.+++|+||.++|...+.|.-.-|.
T Consensus 4 ~~~~~l~~yW~~~r~~~~~P~R~did 29 (137)
T PF07310_consen 4 PSLRALLAYWRSLRGGRGMPSRSDID 29 (137)
T ss_pred hHHHHHHHHHHHhcCCCCCCchhcCC
Confidence 45789999999999877655543333
No 13
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=23.06 E-value=3.3e+02 Score=20.81 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHHhh
Q 008434 381 EHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQK 439 (565)
Q Consensus 381 ~~ISED~FE~IMDrFEK~sy~sp~~il~~eea~~llkelg~~~v~kaVYeYWk~KR~k~ 439 (565)
..+|+++.+.|...|+...| ++.++...+...+|.. ...|+.+..++|.+.
T Consensus 5 ~~~t~~q~~~L~~~f~~~~~------p~~~~~~~la~~l~l~--~~~V~~WF~nrR~k~ 55 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQENPY------PSKEEREELAKELGLT--ERQVKNWFQNRRRKE 55 (57)
T ss_dssp SSSSHHHHHHHHHHHHHSSS------CHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc------cccccccccccccccc--ccccccCHHHhHHHh
Confidence 57999999999999998554 3445666777776643 367787788888653
Done!