Query 008434
Match_columns 565
No_of_seqs 211 out of 362
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b19_A PEPA1; toxin, toxin apo 45.3 10 0.00036 26.5 1.8 17 422-438 13-29 (30)
2 3dvk_B Voltage-dependent R-typ 21.3 45 0.0015 22.1 1.7 14 425-438 9-22 (23)
3 3nnf_A CURA; non-HAEM Fe(II)/a 20.5 58 0.002 33.9 3.2 38 380-417 22-59 (344)
4 3s0r_A De novo designed helica 18.2 1.8E+02 0.0063 19.8 4.2 19 526-544 10-28 (30)
5 2kt9_A Probable 30S ribosomal 12.8 2.4E+02 0.0082 25.2 4.7 48 385-444 45-93 (116)
6 3dve_B Voltage-dependent N-typ 12.6 41 0.0014 22.3 -0.2 14 425-438 8-21 (23)
7 3bxl_B CAM, voltage-dependent 12.1 1E+02 0.0035 20.9 1.7 15 425-439 5-19 (26)
8 2k48_A Nucleoprotein; viral pr 12.0 7.4E+02 0.025 21.8 8.9 47 501-547 54-103 (107)
9 1b0n_B Protein (SINI protein); 9.6 1.6E+02 0.0055 23.1 2.3 37 357-399 7-43 (57)
10 2b5u_A Colicin E3; high resolu 9.3 7.6E+02 0.026 27.2 8.1 25 511-535 311-335 (551)
No 1
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=45.32 E-value=10 Score=26.54 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 008434 422 KEVVLAVYNHWKQKRKQ 438 (565)
Q Consensus 422 ~~v~kaVYeYWk~KR~k 438 (565)
...+.+.|.||++.|.+
T Consensus 13 sGcivalF~hWL~~r~~ 29 (30)
T 4b19_A 13 SGCAIAFFSYWLSRRNT 29 (30)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 46788999999999965
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=21.29 E-value=45 Score=22.06 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHh
Q 008434 425 VLAVYNHWKQKRKQ 438 (565)
Q Consensus 425 ~kaVYeYWk~KR~k 438 (565)
+--|+|||+..|.+
T Consensus 9 ~llI~d~~r~~k~r 22 (23)
T 3dvk_B 9 AMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 45689999988865
No 3
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=20.54 E-value=58 Score=33.93 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHH
Q 008434 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCL 417 (565)
Q Consensus 380 ~~~ISED~FE~IMDrFEK~sy~sp~~il~~eea~~llk 417 (565)
..+++.++.|.++..||+..|+-..++++++|+.++.+
T Consensus 22 ~~~l~~~qve~~~~~fE~eGYLvlk~vFs~eEv~~l~~ 59 (344)
T 3nnf_A 22 SNAMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQK 59 (344)
T ss_dssp ---CCSHHHHHHHHHHHHHSEEEETTCSCHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhhccCceEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999998888999988776654
No 4
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=18.16 E-value=1.8e+02 Score=19.81 Aligned_cols=19 Identities=42% Similarity=0.378 Sum_probs=10.1
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 008434 526 AQLLMQNADLATYKATMAL 544 (565)
Q Consensus 526 aq~l~~~adlaiyka~~al 544 (565)
||.-+++|.||+.-|+-||
T Consensus 10 aqqalekaqlalqaarqal 28 (30)
T 3s0r_A 10 AQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555544
No 5
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=12.82 E-value=2.4e+02 Score=25.21 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHHhh-CCccc
Q 008434 385 EDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQK-RAALL 444 (565)
Q Consensus 385 ED~FE~IMDrFEK~sy~sp~~il~~eea~~llkelg~~~v~kaVYeYWk~KR~k~-GkPLL 444 (565)
.|-.|.|=..||.-...+ ..+...+| .-+.+|-+||.+||.+. ++|+-
T Consensus 45 ~DAWe~LK~eLEsK~WIs------e~e~i~lL------N~~TeiIN~WQe~~~~~k~~~~~ 93 (116)
T 2kt9_A 45 ADAWQQLKDELEAKHWIA------EADRINVL------NQATEVINFWQDLKNQNKQISMA 93 (116)
T ss_dssp SCHHHHHHHHHHHSTTSC------HHHHHHHH------HHHHHHHHHHHHHHHHTCCCCHH
T ss_pred ccHHHHHHHHHhcCCCCC------HHHHHHHH------HHHHHHHHHHHhhhhccccCCHH
Confidence 467788888888776543 23334433 34678999999999844 55543
No 6
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=12.58 E-value=41 Score=22.28 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHh
Q 008434 425 VLAVYNHWKQKRKQ 438 (565)
Q Consensus 425 ~kaVYeYWk~KR~k 438 (565)
+--|++||++.|.+
T Consensus 8 allI~d~~r~~k~~ 21 (23)
T 3dve_B 8 ALMIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 45689999887654
No 7
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=12.12 E-value=1e+02 Score=20.92 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhh
Q 008434 425 VLAVYNHWKQKRKQK 439 (565)
Q Consensus 425 ~kaVYeYWk~KR~k~ 439 (565)
+--||+||++-+.++
T Consensus 5 a~mI~e~yrq~K~~r 19 (26)
T 3bxl_B 5 AMMIMDYYKQSKVKK 19 (26)
T ss_pred HHHHHHHHHHHHhhh
Confidence 456899998766554
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=11.96 E-value=7.4e+02 Score=21.79 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008434 501 AMRRVEEAKASAKR---SLEEAVLKRQRAQLLMQNADLATYKATMALRIA 547 (565)
Q Consensus 501 ~~~rl~~a~~~A~~---~~e~a~lkR~Raq~l~~~adlaiyka~~al~~a 547 (565)
+..||.+|...+.. -++...+.++++-...+++-|+=.|..||-.+|
T Consensus 54 ArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 54 ARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666543 356667778888888888899999988877776
No 9
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=9.59 E-value=1.6e+02 Score=23.08 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhcc
Q 008434 357 DMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAY 399 (565)
Q Consensus 357 DMDEEDEeWL~~~N~k~~~~~dg~~~ISED~FE~IMDrFEK~s 399 (565)
.+++-|.+||.-+..-+ ...+|.+++..++....+.+
T Consensus 7 ~~~~~d~ewl~LI~~Ak------~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAK------EANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp --CCCCHHHHHHHHHHH------HTTCCHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHH------HcCCCHHHHHHHHHHhccCC
Confidence 46788999999887654 24799999999998776654
No 10
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=9.34 E-value=7.6e+02 Score=27.20 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 008434 511 SAKRSLEEAVLKRQRAQLLMQNADL 535 (565)
Q Consensus 511 ~A~~~~e~a~lkR~Raq~l~~~adl 535 (565)
.++|=++.|.+.=++|+..|..|+.
T Consensus 311 ~~~hp~~~Aer~~e~a~ael~~a~k 335 (551)
T 2b5u_A 311 DATHPVEAAERNYERARAELNQANE 335 (551)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555544443
Done!