Query 008434
Match_columns 565
No_of_seqs 211 out of 362
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 03:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 20.5 28 0.0021 22.3 2.2 15 6-20 14-28 (30)
2 d1dcja_ d.68.3.3 (A:) SirA {Es 16.8 50 0.0037 24.7 3.5 46 201-247 27-81 (81)
3 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 16.2 1.3E+02 0.0093 22.6 5.8 42 380-423 21-62 (80)
4 d2jdqd1 d.361.1.1 (D:688-756) 15.6 21 0.0015 26.9 0.8 30 184-222 17-46 (69)
5 d1vlya1 b.44.2.1 (A:244-325) H 11.2 1.7E+02 0.012 22.0 5.1 37 214-250 22-60 (82)
6 d2gf5a2 a.77.1.4 (A:2-83) FADD 10.6 3E+02 0.022 20.3 8.3 63 357-431 13-81 (82)
7 d1wi3a_ a.4.1.1 (A:) DNA-bindi 7.3 3.9E+02 0.028 19.1 6.6 53 380-439 11-63 (71)
8 d1tjla1 a.2.14.1 (A:7-110) Dna 7.2 2.2E+02 0.016 22.6 4.4 30 510-539 70-99 (104)
9 d1b0na1 a.34.1.1 (A:74-108) Si 7.0 1.6E+02 0.012 19.4 2.7 26 362-393 2-27 (35)
10 d1um8a_ c.37.1.20 (A:) ClpX {H 6.6 2.4E+02 0.017 26.4 5.2 30 407-436 6-41 (364)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.47 E-value=28 Score=22.26 Aligned_cols=15 Identities=33% Similarity=1.001 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCCc
Q 008434 6 ICAFLWSILYQDPPI 20 (565)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (565)
|..|.+.+|++.||-
T Consensus 14 i~lfffaiffreppr 28 (30)
T d2axtt1 14 IALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 446888999999984
No 2
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
Probab=16.81 E-value=50 Score=24.68 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=31.6
Q ss_pred hhccCcceeecceEEEecCce--------eeecCcEE-EEEeCCCceeEEEEEecc
Q 008434 201 MLDLDRSCCCVSILVMESDRC--------CRVEGANV-ILEMSHSKEWHLVVKKDG 247 (565)
Q Consensus 201 ~~~~~s~~c~an~li~~~dr~--------~re~ga~V-~le~~dg~~~ri~Ikl~~ 247 (565)
++.++...-..-|.|+-.|.+ .+..|..| .+|- +|..|++.|++.|
T Consensus 27 k~al~~~~~G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~~-~~~~~~~~I~Kgg 81 (81)
T d1dcja_ 27 RKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKET-DGLPYRYLIRKGG 81 (81)
T ss_dssp HHHHHHCCTTCCEEEEECSTTHHHHHHHHHHHTTCEEEEEEC-SSSSEEEEEECCC
T ss_pred HHHHHhCCCCCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEEE-eCCEEEEEEEECC
Confidence 344444444555666666765 67889987 5555 8899999997654
No 3
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.21 E-value=1.3e+02 Score=22.61 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhH
Q 008434 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKE 423 (565)
Q Consensus 380 ~~~ISED~FE~IMDrFEK~sy~sp~~il~~eea~~llkelg~~~ 423 (565)
...+|.++.|.|-..||+..+.++ ..+.++..+++.++|...
T Consensus 21 Rt~ft~~Q~~~L~~~fe~~~~~~~--~p~~~~~~~la~~~gl~~ 62 (80)
T d1wh7a_ 21 RTKFTAEQKEKMLAFAERLGWRIQ--KHDDVAVEQFCAETGVRR 62 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSCCC--SSTTHHHHHHHHHSCCCH
T ss_pred cccCCHHHHHHHHHHHHHhccccc--CcCHHHHHHHHHHHCCCH
Confidence 467999999999999999876543 234467788888887543
No 4
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]}
Probab=15.61 E-value=21 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred cccchhhhchhhhhHhhhhccCcceeecceEEEecCcee
Q 008434 184 HSSVLSIKEVSSTVDSLMLDLDRSCCCVSILVMESDRCC 222 (565)
Q Consensus 184 ~~~~~~~~e~~~~~~~~~~~~~s~~c~an~li~~~dr~~ 222 (565)
--|+..|+|++.-..+ =.|||||-|||--|
T Consensus 17 yGpalsIneLs~L~kG---------EkANvligqg~~v~ 46 (69)
T d2jdqd1 17 YGPALSINELSNLAKG---------EKANVLIGQGDVVL 46 (69)
T ss_dssp GCSCBCTTGGGGSCTT---------CEEEEEEETTEEEE
T ss_pred cCccccHHHHhhcCcc---------ccccEEEeCCCEEE
Confidence 4577888886554443 36999999999765
No 5
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.15 E-value=1.7e+02 Score=21.99 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=28.0
Q ss_pred EEEecCceeeecCcEEEEE-eCCCceeEEEE-Eeccccc
Q 008434 214 LVMESDRCCRVEGANVILE-MSHSKEWHLVV-KKDGETR 250 (565)
Q Consensus 214 li~~~dr~~re~ga~V~le-~~dg~~~ri~I-kl~~~t~ 250 (565)
|-.+.+-+||-.|..|..- ..||..|-++| +.+....
T Consensus 22 le~~~~~~wr~~G~Vv~a~~~~dg~~~~laVL~~d~~~~ 60 (82)
T d1vlya1 22 LELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPD 60 (82)
T ss_dssp EEEEETTEEEEECEEEEEEECTTSCEEEEEEEETTCCTT
T ss_pred eEeecCCCCccccEEEEEEECCCCcEEEEEEeCCCcccC
Confidence 4455677999999999866 46899999988 6655443
No 6
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=3e+02 Score=20.26 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCChhhHHHHHHhhhhhcccccCCCCCCHHHHH------HHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHH
Q 008434 357 DMDSEDEEWLKKFNNEFVTENELHEHVSEDTFE------LIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYN 430 (565)
Q Consensus 357 DMDEEDEeWL~~~N~k~~~~~dg~~~ISED~FE------~IMDrFEK~sy~sp~~il~~eea~~llkelg~~~v~kaVYe 430 (565)
+|+++|.+=|+-+-.. .|+....| .++..||+....+|+++ +....++..++..++++.|=+
T Consensus 13 ~L~~~dl~~lKfl~~d---------~i~~~~le~~~~~l~lf~~Le~~~~l~~~nl---~~L~~lL~~i~R~DL~~~i~~ 80 (82)
T d2gf5a2 13 SLSSSELTELKYLCLG---------RVGKRKLERVQSGLDLFSMLLEQNDLEPGHT---ELLRELLASLRRHDLLRRVDD 80 (82)
T ss_dssp TSCHHHHHHHHHHTTT---------TSCHHHHHHCCSSHHHHHHHHHTTSCCSSCC---HHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHh---------hcCHHHHHccCCHHHHHHHHHHcCCCCCccH---HHHHHHHHHcChHHHHHHHHH
Confidence 5788888877765432 34444443 36777888888888776 346678888888899998877
Q ss_pred H
Q 008434 431 H 431 (565)
Q Consensus 431 Y 431 (565)
|
T Consensus 81 y 81 (82)
T d2gf5a2 81 F 81 (82)
T ss_dssp H
T ss_pred c
Confidence 6
No 7
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.32 E-value=3.9e+02 Score=19.05 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhChhHHHHHHHHHHHHHHHhh
Q 008434 380 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQK 439 (565)
Q Consensus 380 ~~~ISED~FE~IMDrFEK~sy~sp~~il~~eea~~llkelg~~~v~kaVYeYWk~KR~k~ 439 (565)
...+|+++.+.|-..|++.. .+++.++...+...+|... ..|-..-.++|.+.
T Consensus 11 R~~~t~~Q~~~Le~~F~~~~-----~~P~~~~~~~La~~lgl~~--~qV~~WFqNrR~k~ 63 (71)
T d1wi3a_ 11 RTKISLEALGILQSFIHDVG-----LYPDQEAIHTLSAQLDLPK--HTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----SCCCHHHHHHHHHHSCCCH--HHHHHHHHHHHHHC
T ss_pred CccCCHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHhCCCH--HHHHHHhHhhHhhh
Confidence 36899999999999997632 1344566666777776443 33433336777654
No 8
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=7.21 E-value=2.2e+02 Score=22.56 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008434 510 ASAKRSLEEAVLKRQRAQLLMQNADLATYK 539 (565)
Q Consensus 510 ~~A~~~~e~a~lkR~Raq~l~~~adlaiyk 539 (565)
|....-..+..+.|.|.+.|+.+-|.|+-+
T Consensus 70 As~E~~~~leLR~~dRerKLL~KI~~AL~R 99 (104)
T d1tjla1 70 AAQEEEFSLELRNRDRERKLIKKIEKTLKK 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455568999999999998877643
No 9
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=7.00 E-value=1.6e+02 Score=19.43 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=19.3
Q ss_pred hHHHHHHhhhhhcccccCCCCCCHHHHHHHHH
Q 008434 362 DEEWLKKFNNEFVTENELHEHVSEDTFELIVD 393 (565)
Q Consensus 362 DEeWL~~~N~k~~~~~dg~~~ISED~FE~IMD 393 (565)
|.+|-+.+...+ ..-+|-++|-..++
T Consensus 2 DseW~~lVkeAM------~SGvSK~QFrEfle 27 (35)
T d1b0na1 2 DSEWEKLVRDAM------TSGVSKKQFREFLD 27 (35)
T ss_dssp CHHHHHHHHHHH------HSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHH------HccCCHHHHHHHHH
Confidence 678888877655 24699999987665
No 10
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=6.64 E-value=2.4e+02 Score=26.41 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHhh--C----hhHHHHHHHHHHHHHH
Q 008434 407 SNEEAAVNLCLEL--G----QKEVVLAVYNHWKQKR 436 (565)
Q Consensus 407 l~~eea~~llkel--g----~~~v~kaVYeYWk~KR 436 (565)
.++.++...|... | ...++.+||+||+..|
T Consensus 6 ~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~ 41 (364)
T d1um8a_ 6 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLS 41 (364)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHH
Confidence 3666777777643 3 2358899999998754
Done!