BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008435
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ +GD + I Q AL +P+N A +G ++G +EA+EY + A L
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA-----LELD 73
Query: 439 PTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487
P EA W G A +Q ++E I + ++ L +P ++K
Sbjct: 74 PNNAEA---------WYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAK 114
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430
+ +GD + I Q AL +P+N A +G ++G +EA+EY + A+
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430
+ +GD ++ I Q AL +P+N +A +G ++G ++A+EY + A+
Sbjct: 19 YYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ +GD + I Q AL P+N A +G ++G +EA+EY + A L +
Sbjct: 19 YYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA-----LELY 73
Query: 439 PTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLER 474
P EA W G A +Q ++E I + ++
Sbjct: 74 PNNAEA---------WYNLGNAYYKQGDYDEAIEYYQK 102
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ +GD + I Q AL P+N A +G ++G +EA+EY + A L +
Sbjct: 53 YYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA-----LELY 107
Query: 439 PTEPEAIDLLIVASQWSG 456
P EA L A Q G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440
+KGD + I + L +P+N+ L+ +G+T + GL +A+E L K F+ T
Sbjct: 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL-----KKFVVLDTT 71
Query: 441 EPEAIDLL 448
EA +L
Sbjct: 72 SAEAYYIL 79
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ +GD + I Q AL +P + A +G ++G +EA+EY + A+
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------- 63
Query: 439 PTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492
+P + A W G A +Q ++E I + ++ L +P+S +Y+
Sbjct: 64 -LDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYN 108
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430
+ +GD + I Q AL +P + A +G ++G +EA+EY + A+
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432
+ L V+ + G + + L + AL + P + AL + +TQL+ GL+ A+E + +++
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 433 L--FLAGHPTEPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLER-IGNLKEPE 482
+L G+ EA VA RQ E E G +LE+ + LK+ E
Sbjct: 69 TPRYLGGYMVLSEAY-----------VALYRQAEDRERGKGYLEQALSVLKDAE 111
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430
+ +GD + I Q AL +P + A +G ++G +EA+EY + A+
Sbjct: 13 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
>pdb|1XLY|A Chain A, X-Ray Structure Of The Rna-Binding Protein She2p
pdb|1XLY|B Chain B, X-Ray Structure Of The Rna-Binding Protein She2p
Length = 234
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 84 TVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIA--LLPLI 141
T +L + ++ E+ +L ++++ DTY+ F F W I +LRI LL L
Sbjct: 113 TQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMI-----ESLRIGSNLLDLE 167
Query: 142 VLQL 145
V+Q
Sbjct: 168 VVQF 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,846,002
Number of Sequences: 62578
Number of extensions: 581553
Number of successful extensions: 1526
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 24
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)