Query 008435
Match_columns 565
No_of_seqs 377 out of 2563
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 6.7E-42 1.4E-46 342.0 18.1 205 104-331 41-251 (255)
2 PRK00145 putative inner membra 100.0 2E-41 4.4E-46 332.7 17.9 191 117-329 26-218 (223)
3 PF02096 60KD_IMP: 60Kd inner 100.0 2.6E-39 5.7E-44 314.0 14.8 191 121-323 2-196 (198)
4 PRK01622 OxaA-like protein pre 100.0 6E-39 1.3E-43 321.2 17.6 198 104-323 42-250 (256)
5 TIGR03592 yidC_oxa1_cterm memb 100.0 4.1E-39 8.9E-44 307.6 15.4 179 121-322 1-181 (181)
6 PRK02463 OxaA-like protein pre 100.0 6.9E-39 1.5E-43 326.5 17.3 212 103-337 41-267 (307)
7 PRK01318 membrane protein inse 100.0 1.1E-38 2.4E-43 346.5 15.8 200 100-325 302-509 (521)
8 PRK01001 putative inner membra 100.0 1.1E-37 2.4E-42 339.5 14.8 201 107-323 562-777 (795)
9 PRK03449 putative inner membra 100.0 1.9E-36 4.1E-41 307.5 16.5 217 98-321 3-267 (304)
10 COG0706 YidC Preprotein transl 100.0 2E-35 4.4E-40 304.6 17.2 213 96-327 84-300 (314)
11 PRK01315 putative inner membra 100.0 1.1E-35 2.3E-40 304.6 14.0 217 98-322 9-256 (329)
12 PRK02201 putative inner membra 100.0 4.1E-35 8.8E-40 302.6 17.0 218 99-327 107-345 (357)
13 PRK00247 putative inner membra 100.0 2.7E-33 5.9E-38 294.1 19.7 226 98-333 3-281 (429)
14 KOG1239 Inner membrane protein 100.0 2.8E-29 6.2E-34 262.6 16.2 219 98-337 78-304 (372)
15 PRK02654 putative inner membra 99.9 1.6E-26 3.4E-31 231.3 16.7 209 100-323 6-342 (375)
16 KOG4626 O-linked N-acetylgluco 99.7 7.3E-16 1.6E-20 163.9 13.1 142 358-519 275-425 (966)
17 KOG4626 O-linked N-acetylgluco 99.6 1.1E-14 2.3E-19 155.2 15.5 176 356-551 307-500 (966)
18 KOG1126 DNA-binding cell divis 99.5 4.6E-14 1E-18 152.4 10.7 185 359-557 411-607 (638)
19 PRK11189 lipoprotein NlpI; Pro 99.5 1.5E-12 3.3E-17 134.3 16.2 173 369-560 64-255 (296)
20 PRK15359 type III secretion sy 99.4 1.8E-12 3.9E-17 119.4 14.2 107 368-487 23-129 (144)
21 COG3063 PilF Tfp pilus assembl 99.4 5.3E-12 1.2E-16 121.6 15.8 138 369-524 35-181 (250)
22 TIGR00990 3a0801s09 mitochondr 99.4 6E-12 1.3E-16 142.5 17.0 179 366-557 362-558 (615)
23 PRK12370 invasion protein regu 99.4 6.8E-12 1.5E-16 140.3 14.8 186 362-560 251-460 (553)
24 PRK12370 invasion protein regu 99.2 2.3E-10 5E-15 128.1 18.2 146 359-516 328-475 (553)
25 PRK15363 pathogenicity island 99.2 2.2E-10 4.7E-15 105.7 13.2 100 368-480 34-133 (157)
26 TIGR02521 type_IV_pilW type IV 99.2 9.7E-10 2.1E-14 105.9 18.6 175 368-561 30-223 (234)
27 PRK15359 type III secretion sy 99.2 2.9E-10 6.4E-15 104.7 13.7 124 386-525 10-135 (144)
28 PRK10370 formate-dependent nit 99.2 3.4E-10 7.3E-15 110.0 14.6 114 359-484 63-179 (198)
29 KOG1126 DNA-binding cell divis 99.2 9.5E-11 2.1E-15 127.1 11.4 148 359-519 445-594 (638)
30 TIGR02552 LcrH_SycD type III s 99.2 3.5E-10 7.5E-15 102.0 13.4 115 359-486 7-121 (135)
31 TIGR00990 3a0801s09 mitochondr 99.2 4.5E-10 9.7E-15 127.3 16.9 141 366-519 328-470 (615)
32 TIGR03302 OM_YfiO outer membra 99.1 8.8E-10 1.9E-14 109.2 15.0 177 365-559 29-221 (235)
33 PRK09782 bacteriophage N4 rece 99.1 9.8E-10 2.1E-14 129.3 17.4 141 368-522 575-717 (987)
34 PRK15179 Vi polysaccharide bio 99.1 1.3E-09 2.8E-14 123.8 17.8 134 368-514 85-220 (694)
35 KOG1125 TPR repeat-containing 99.1 8.3E-10 1.8E-14 118.2 15.1 173 372-557 288-514 (579)
36 PRK15174 Vi polysaccharide exp 99.1 7.3E-10 1.6E-14 126.4 15.6 141 363-516 240-386 (656)
37 PLN03088 SGT1, suppressor of 99.1 6.8E-10 1.5E-14 117.5 13.6 106 370-488 3-108 (356)
38 TIGR02521 type_IV_pilW type IV 99.1 3E-09 6.5E-14 102.5 16.4 141 368-519 64-206 (234)
39 KOG0553 TPR repeat-containing 99.1 8.4E-10 1.8E-14 110.4 12.2 107 369-488 81-187 (304)
40 COG3063 PilF Tfp pilus assembl 99.1 3.3E-09 7.2E-14 102.5 15.5 113 363-486 63-175 (250)
41 PRK15174 Vi polysaccharide exp 99.1 1.8E-09 4E-14 123.1 16.2 108 364-484 71-178 (656)
42 KOG1155 Anaphase-promoting com 99.1 1E-09 2.3E-14 114.6 12.7 104 359-474 354-457 (559)
43 PRK10370 formate-dependent nit 99.1 1.6E-09 3.5E-14 105.2 13.2 122 382-516 52-178 (198)
44 PRK11447 cellulose synthase su 99.1 2.1E-09 4.5E-14 130.2 16.3 132 374-518 274-421 (1157)
45 PRK11189 lipoprotein NlpI; Pro 99.1 7.4E-09 1.6E-13 106.9 18.1 109 359-480 88-196 (296)
46 PRK11788 tetratricopeptide rep 99.0 5.4E-09 1.2E-13 111.0 16.6 110 366-484 32-141 (389)
47 PRK09782 bacteriophage N4 rece 99.0 4.7E-09 1E-13 123.6 16.6 142 359-516 600-745 (987)
48 TIGR02917 PEP_TPR_lipo putativ 99.0 7.7E-09 1.7E-13 119.7 18.2 177 368-557 21-243 (899)
49 KOG1125 TPR repeat-containing 99.0 9.4E-10 2E-14 117.8 9.5 107 363-482 424-530 (579)
50 TIGR02552 LcrH_SycD type III s 99.0 4.6E-09 1E-13 94.6 12.6 123 390-525 4-128 (135)
51 KOG0547 Translocase of outer m 99.0 5.7E-09 1.2E-13 109.8 14.6 111 359-482 384-494 (606)
52 PRK11447 cellulose synthase su 99.0 7.8E-09 1.7E-13 125.3 17.3 182 359-553 293-541 (1157)
53 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.9E-09 1.3E-13 91.0 10.9 107 369-485 2-111 (119)
54 KOG1155 Anaphase-promoting com 98.9 1.7E-08 3.6E-13 105.8 15.0 133 369-514 330-464 (559)
55 TIGR02917 PEP_TPR_lipo putativ 98.9 3.9E-08 8.5E-13 113.8 17.0 104 368-484 192-295 (899)
56 PRK11788 tetratricopeptide rep 98.8 7.4E-08 1.6E-12 102.3 15.9 136 371-519 182-319 (389)
57 PF13414 TPR_11: TPR repeat; P 98.8 7.9E-09 1.7E-13 82.2 6.3 65 368-432 2-67 (69)
58 PRK10153 DNA-binding transcrip 98.8 3.9E-08 8.4E-13 108.7 13.9 139 360-517 330-488 (517)
59 cd00189 TPR Tetratricopeptide 98.8 3.5E-08 7.5E-13 79.9 10.2 98 371-481 2-99 (100)
60 KOG0547 Translocase of outer m 98.8 3.6E-08 7.9E-13 103.8 12.7 173 371-557 362-553 (606)
61 PF13429 TPR_15: Tetratricopep 98.8 8.6E-09 1.9E-13 105.1 7.9 120 367-499 144-263 (280)
62 PF13432 TPR_16: Tetratricopep 98.8 7.8E-09 1.7E-13 81.4 5.9 60 373-432 1-60 (65)
63 PRK10803 tol-pal system protei 98.8 4.5E-08 9.8E-13 99.1 12.8 109 366-484 139-251 (263)
64 COG5010 TadD Flp pilus assembl 98.8 1E-07 2.2E-12 93.9 13.9 109 366-487 97-205 (257)
65 PLN02789 farnesyltranstransfer 98.8 1.4E-07 3.1E-12 98.2 15.1 128 379-519 47-179 (320)
66 PRK11906 transcriptional regul 98.8 6.6E-08 1.4E-12 102.8 12.6 143 359-516 240-406 (458)
67 PRK10049 pgaA outer membrane p 98.7 1.2E-07 2.5E-12 110.4 15.3 108 365-486 45-152 (765)
68 CHL00033 ycf3 photosystem I as 98.7 2.2E-07 4.9E-12 87.5 14.0 103 367-474 33-138 (168)
69 PF13429 TPR_15: Tetratricopep 98.7 1.1E-07 2.5E-12 96.9 11.7 143 369-524 110-256 (280)
70 PRK02603 photosystem I assembl 98.7 1.5E-07 3.3E-12 89.0 11.2 119 366-515 32-153 (172)
71 COG2956 Predicted N-acetylgluc 98.7 4.1E-07 8.8E-12 91.9 14.6 131 369-519 180-319 (389)
72 TIGR03302 OM_YfiO outer membra 98.7 3.6E-07 7.8E-12 90.4 14.3 110 369-484 70-200 (235)
73 PRK14574 hmsH outer membrane p 98.7 7E-07 1.5E-11 103.5 18.5 170 366-555 31-217 (822)
74 COG4783 Putative Zn-dependent 98.7 9E-07 2E-11 93.9 17.5 115 366-493 303-417 (484)
75 PLN02789 farnesyltranstransfer 98.7 1.9E-07 4.2E-12 97.2 12.5 142 365-519 67-220 (320)
76 KOG0553 TPR repeat-containing 98.6 9.3E-08 2E-12 95.9 9.1 106 357-474 103-211 (304)
77 PF13414 TPR_11: TPR repeat; P 98.6 1E-07 2.2E-12 75.7 7.6 68 401-481 1-69 (69)
78 KOG2003 TPR repeat-containing 98.6 2.4E-07 5.1E-12 96.7 12.0 120 354-486 474-594 (840)
79 PRK15179 Vi polysaccharide bio 98.6 3.3E-07 7.1E-12 104.4 14.4 113 359-483 110-222 (694)
80 PF12895 Apc3: Anaphase-promot 98.6 6.8E-08 1.5E-12 80.2 6.6 81 381-474 1-83 (84)
81 COG1729 Uncharacterized protei 98.6 4.2E-07 9.1E-12 90.6 13.0 107 368-484 140-249 (262)
82 KOG1173 Anaphase-promoting com 98.6 2.4E-07 5.2E-12 99.4 11.9 147 370-522 381-532 (611)
83 PRK15363 pathogenicity island 98.6 4.5E-07 9.7E-12 83.9 12.1 119 393-524 24-148 (157)
84 KOG3060 Uncharacterized conser 98.6 1.8E-06 3.9E-11 84.8 16.6 141 369-522 86-231 (289)
85 COG4235 Cytochrome c biogenesi 98.6 4.1E-07 8.9E-12 91.7 12.6 115 359-485 146-263 (287)
86 PRK10049 pgaA outer membrane p 98.6 8.3E-07 1.8E-11 103.3 16.9 135 364-519 10-153 (765)
87 COG5010 TadD Flp pilus assembl 98.6 1.9E-06 4.1E-11 85.1 16.5 107 368-488 66-172 (257)
88 PRK10866 outer membrane biogen 98.6 1.3E-06 2.8E-11 87.6 15.2 108 367-484 30-158 (243)
89 KOG1129 TPR repeat-containing 98.6 8.6E-08 1.9E-12 96.7 6.6 150 362-523 283-436 (478)
90 KOG2076 RNA polymerase III tra 98.6 2.1E-06 4.5E-11 96.5 17.7 132 369-513 139-272 (895)
91 PRK15331 chaperone protein Sic 98.6 5.7E-07 1.2E-11 83.6 11.2 103 368-484 36-138 (165)
92 KOG4555 TPR repeat-containing 98.5 1.7E-06 3.7E-11 76.8 13.1 99 371-477 45-143 (175)
93 PF13432 TPR_16: Tetratricopep 98.5 3.5E-07 7.6E-12 71.8 7.0 65 407-484 1-65 (65)
94 PF13525 YfiO: Outer membrane 98.5 3.5E-06 7.6E-11 82.1 14.7 109 367-485 3-125 (203)
95 cd05804 StaR_like StaR_like; a 98.4 1.5E-06 3.3E-11 91.2 12.4 107 366-481 111-217 (355)
96 KOG0543 FKBP-type peptidyl-pro 98.4 3.4E-06 7.3E-11 88.0 14.4 140 407-548 212-357 (397)
97 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 9.1E-07 2E-11 94.1 9.8 69 364-432 70-141 (453)
98 PF12688 TPR_5: Tetratrico pep 98.4 2.4E-06 5.3E-11 76.1 11.0 98 370-476 2-102 (120)
99 KOG0624 dsRNA-activated protei 98.4 4.9E-06 1.1E-10 84.7 13.6 137 368-517 37-190 (504)
100 KOG0548 Molecular co-chaperone 98.4 2.1E-06 4.6E-11 91.8 11.6 140 369-522 358-499 (539)
101 PF09976 TPR_21: Tetratricopep 98.4 2.9E-06 6.4E-11 78.0 11.2 92 370-474 49-143 (145)
102 KOG1173 Anaphase-promoting com 98.4 2.9E-06 6.3E-11 91.2 12.5 176 368-558 311-506 (611)
103 KOG1840 Kinesin light chain [C 98.3 1.6E-05 3.5E-10 87.1 17.6 105 369-477 199-311 (508)
104 PRK14574 hmsH outer membrane p 98.3 1.1E-05 2.4E-10 93.8 17.1 140 359-514 92-231 (822)
105 KOG1840 Kinesin light chain [C 98.3 5.2E-06 1.1E-10 90.9 13.0 175 374-556 246-465 (508)
106 PLN03088 SGT1, suppressor of 98.3 2.5E-06 5.4E-11 90.4 10.2 92 359-462 26-117 (356)
107 PF09976 TPR_21: Tetratricopep 98.3 1.2E-05 2.5E-10 74.0 13.4 97 369-474 11-110 (145)
108 TIGR00540 hemY_coli hemY prote 98.3 5.7E-05 1.2E-09 81.5 20.9 95 369-475 118-213 (409)
109 PF13512 TPR_18: Tetratricopep 98.3 1.1E-05 2.4E-10 73.4 12.3 91 365-464 6-99 (142)
110 KOG4648 Uncharacterized conser 98.3 2.8E-06 6E-11 86.4 9.2 102 371-485 99-200 (536)
111 cd05804 StaR_like StaR_like; a 98.3 1.2E-05 2.7E-10 84.3 14.3 39 370-408 44-82 (355)
112 PRK11906 transcriptional regul 98.3 5.8E-06 1.3E-10 88.2 11.7 110 363-485 289-407 (458)
113 PF06552 TOM20_plant: Plant sp 98.3 9.1E-06 2E-10 76.4 11.5 119 386-537 8-135 (186)
114 PRK02603 photosystem I assembl 98.3 7.1E-06 1.5E-10 77.6 11.1 78 399-486 31-108 (172)
115 KOG0624 dsRNA-activated protei 98.3 4.8E-05 1E-09 77.6 17.1 154 359-518 62-259 (504)
116 TIGR00540 hemY_coli hemY prote 98.2 2.1E-05 4.6E-10 84.9 15.5 184 372-560 156-389 (409)
117 PF14559 TPR_19: Tetratricopep 98.2 1.5E-06 3.3E-11 68.6 4.9 54 379-432 1-54 (68)
118 KOG2002 TPR-containing nuclear 98.2 4.3E-05 9.3E-10 86.8 17.9 145 359-519 223-379 (1018)
119 PRK10747 putative protoheme IX 98.2 1.6E-05 3.5E-10 85.5 14.0 140 374-519 158-331 (398)
120 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.1E-05 4.6E-10 68.3 12.1 102 403-518 2-112 (119)
121 KOG0548 Molecular co-chaperone 98.2 8.8E-06 1.9E-10 87.2 11.2 107 369-488 2-108 (539)
122 KOG1129 TPR repeat-containing 98.2 8.9E-06 1.9E-10 82.4 10.0 179 369-563 256-451 (478)
123 PRK10747 putative protoheme IX 98.2 3.8E-05 8.3E-10 82.6 15.6 95 369-475 117-213 (398)
124 KOG4162 Predicted calmodulin-b 98.2 8.7E-06 1.9E-10 90.3 10.7 133 370-515 651-787 (799)
125 KOG1174 Anaphase-promoting com 98.2 1.4E-05 3.1E-10 83.2 11.5 136 368-523 299-445 (564)
126 PF13424 TPR_12: Tetratricopep 98.2 8.6E-06 1.9E-10 66.3 8.0 72 400-476 2-73 (78)
127 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7.6E-06 1.6E-10 87.2 9.5 71 398-477 70-140 (453)
128 KOG2002 TPR-containing nuclear 98.1 1.2E-05 2.6E-10 91.2 11.1 83 381-475 624-706 (1018)
129 PRK10153 DNA-binding transcrip 98.1 1.2E-05 2.5E-10 89.2 11.0 112 360-485 367-488 (517)
130 PF13371 TPR_9: Tetratricopept 98.1 4.6E-06 9.9E-11 66.9 5.9 57 376-432 2-58 (73)
131 COG4235 Cytochrome c biogenesi 98.1 2.4E-05 5.3E-10 79.1 12.2 123 389-524 142-269 (287)
132 cd00189 TPR Tetratricopeptide 98.1 3.5E-05 7.7E-10 61.8 11.0 96 405-513 2-99 (100)
133 CHL00033 ycf3 photosystem I as 98.1 7.4E-05 1.6E-09 70.3 14.3 95 382-486 12-108 (168)
134 KOG0550 Molecular chaperone (D 98.1 1.5E-05 3.2E-10 83.1 10.1 141 365-514 199-353 (486)
135 PRK14720 transcript cleavage f 98.1 4.2E-05 9.2E-10 88.5 14.6 129 356-490 15-156 (906)
136 KOG1174 Anaphase-promoting com 98.1 0.00011 2.3E-09 76.8 15.3 154 361-523 326-512 (564)
137 KOG1127 TPR repeat-containing 98.0 4.5E-05 9.7E-10 86.6 13.0 165 382-559 471-682 (1238)
138 PF13431 TPR_17: Tetratricopep 98.0 5.1E-06 1.1E-10 56.9 3.3 34 391-424 1-34 (34)
139 PRK10803 tol-pal system protei 98.0 9.7E-05 2.1E-09 75.0 13.7 106 400-519 139-254 (263)
140 KOG3060 Uncharacterized conser 98.0 0.00022 4.7E-09 70.4 15.4 113 359-484 110-225 (289)
141 KOG0543 FKBP-type peptidyl-pro 98.0 0.00012 2.5E-09 76.8 13.6 105 371-488 210-329 (397)
142 COG4785 NlpI Lipoprotein NlpI, 97.9 6.7E-05 1.5E-09 72.3 10.5 105 369-486 65-169 (297)
143 KOG0495 HAT repeat protein [RN 97.9 0.00013 2.8E-09 79.8 13.5 65 368-432 650-714 (913)
144 KOG0550 Molecular chaperone (D 97.9 0.00012 2.6E-09 76.4 12.7 138 373-519 173-324 (486)
145 COG4783 Putative Zn-dependent 97.9 0.00066 1.4E-08 72.5 18.2 167 370-550 273-441 (484)
146 PF13424 TPR_12: Tetratricopep 97.9 1.5E-05 3.3E-10 64.8 4.7 64 369-432 5-75 (78)
147 PRK14720 transcript cleavage f 97.9 0.00017 3.6E-09 83.7 14.8 63 369-432 116-178 (906)
148 KOG1156 N-terminal acetyltrans 97.9 0.00016 3.6E-09 79.1 13.7 140 370-522 8-149 (700)
149 KOG4162 Predicted calmodulin-b 97.9 0.00015 3.3E-09 80.8 13.4 107 366-485 681-789 (799)
150 PF12688 TPR_5: Tetratrico pep 97.9 0.0001 2.2E-09 65.8 9.9 72 403-484 1-72 (120)
151 PF14938 SNAP: Soluble NSF att 97.9 7.9E-05 1.7E-09 76.4 10.6 142 369-516 74-230 (282)
152 PF13428 TPR_14: Tetratricopep 97.9 1.7E-05 3.7E-10 57.5 3.8 44 369-412 1-44 (44)
153 KOG2076 RNA polymerase III tra 97.8 0.00038 8.3E-09 78.8 15.5 108 361-481 165-272 (895)
154 COG2956 Predicted N-acetylgluc 97.8 0.00096 2.1E-08 68.0 16.8 57 373-429 39-95 (389)
155 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00012 2.6E-09 78.2 11.0 94 369-474 200-293 (395)
156 PF13371 TPR_9: Tetratricopept 97.8 5.6E-05 1.2E-09 60.4 6.6 65 409-486 1-65 (73)
157 PF14559 TPR_19: Tetratricopep 97.8 6E-05 1.3E-09 59.4 6.7 60 413-485 1-60 (68)
158 PF13512 TPR_18: Tetratricopep 97.8 0.0005 1.1E-08 62.7 13.3 77 402-488 9-85 (142)
159 PRK15331 chaperone protein Sic 97.8 0.0003 6.4E-09 65.6 11.7 139 369-527 9-149 (165)
160 PF12895 Apc3: Anaphase-promot 97.8 2E-05 4.4E-10 65.3 3.3 61 368-429 24-84 (84)
161 PF13525 YfiO: Outer membrane 97.7 0.0013 2.7E-08 64.2 15.9 105 401-515 3-123 (203)
162 COG4105 ComL DNA uptake lipopr 97.7 0.00091 2E-08 66.5 14.8 109 365-483 30-149 (254)
163 KOG2003 TPR repeat-containing 97.7 0.0005 1.1E-08 72.4 13.3 121 359-485 514-661 (840)
164 KOG1128 Uncharacterized conser 97.7 0.00013 2.9E-09 80.8 8.8 130 369-511 485-616 (777)
165 COG4700 Uncharacterized protei 97.6 0.0013 2.7E-08 62.4 12.7 135 370-516 90-231 (251)
166 PF12569 NARP1: NMDA receptor- 97.6 0.0021 4.6E-08 71.2 16.6 96 369-476 194-289 (517)
167 PRK10866 outer membrane biogen 97.5 0.0023 5E-08 64.2 15.1 105 401-515 30-157 (243)
168 KOG1130 Predicted G-alpha GTPa 97.5 8.4E-05 1.8E-09 77.5 4.7 108 402-518 194-304 (639)
169 PF04733 Coatomer_E: Coatomer 97.5 0.00094 2E-08 68.8 12.5 132 368-519 130-273 (290)
170 COG1729 Uncharacterized protei 97.5 0.00094 2E-08 66.9 11.5 102 406-521 144-254 (262)
171 KOG4642 Chaperone-dependent E3 97.5 0.00025 5.5E-09 69.3 7.0 98 366-475 7-104 (284)
172 PF04184 ST7: ST7 protein; In 97.5 0.0011 2.5E-08 71.1 12.2 100 380-482 179-291 (539)
173 KOG1127 TPR repeat-containing 97.4 0.0009 2E-08 76.5 11.7 111 370-493 420-535 (1238)
174 KOG4234 TPR repeat-containing 97.4 0.0011 2.4E-08 63.4 10.1 99 372-483 98-201 (271)
175 KOG1156 N-terminal acetyltrans 97.4 0.0012 2.6E-08 72.6 11.6 106 369-479 41-173 (700)
176 KOG1130 Predicted G-alpha GTPa 97.4 0.00081 1.8E-08 70.3 9.7 122 369-501 17-145 (639)
177 PF14938 SNAP: Soluble NSF att 97.4 0.00068 1.5E-08 69.5 8.7 105 368-479 33-145 (282)
178 KOG4648 Uncharacterized conser 97.4 0.0031 6.8E-08 64.7 13.1 110 406-528 100-211 (536)
179 KOG1128 Uncharacterized conser 97.3 0.002 4.3E-08 71.7 12.3 133 371-525 426-562 (777)
180 KOG0495 HAT repeat protein [RN 97.3 0.0045 9.7E-08 68.2 13.9 62 368-429 684-745 (913)
181 KOG2796 Uncharacterized conser 97.2 0.011 2.4E-07 58.9 15.2 139 371-516 179-320 (366)
182 KOG0376 Serine-threonine phosp 97.2 0.0003 6.5E-09 75.1 4.5 128 369-514 4-133 (476)
183 KOG4234 TPR repeat-containing 97.2 0.0056 1.2E-07 58.7 12.0 125 406-538 98-224 (271)
184 COG4700 Uncharacterized protei 97.2 0.018 4E-07 54.7 15.2 122 376-515 63-193 (251)
185 KOG2376 Signal recognition par 97.1 0.017 3.7E-07 63.2 16.6 139 373-517 83-259 (652)
186 PF04733 Coatomer_E: Coatomer 97.1 0.0044 9.6E-08 63.8 11.1 101 372-485 168-271 (290)
187 KOG0545 Aryl-hydrocarbon recep 97.0 0.013 2.8E-07 57.9 13.4 114 403-520 178-302 (329)
188 PF07719 TPR_2: Tetratricopept 97.0 0.00083 1.8E-08 45.1 3.3 30 403-432 1-30 (34)
189 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.021 4.5E-07 61.3 15.3 94 380-489 180-273 (395)
190 PF00515 TPR_1: Tetratricopept 96.9 0.00068 1.5E-08 45.8 2.6 30 403-432 1-30 (34)
191 PF07719 TPR_2: Tetratricopept 96.9 0.0023 4.9E-08 43.0 5.0 34 369-402 1-34 (34)
192 COG3118 Thioredoxin domain-con 96.9 0.011 2.5E-07 59.8 11.8 100 368-474 133-261 (304)
193 PF13428 TPR_14: Tetratricopep 96.8 0.0024 5.3E-08 46.1 5.1 35 403-442 1-35 (44)
194 COG3071 HemY Uncharacterized e 96.8 0.064 1.4E-06 56.3 17.3 179 366-556 150-376 (400)
195 PF00515 TPR_1: Tetratricopept 96.8 0.0021 4.5E-08 43.4 4.3 34 369-402 1-34 (34)
196 PF06552 TOM20_plant: Plant sp 96.8 0.0012 2.6E-08 62.3 4.1 68 364-431 20-108 (186)
197 PLN03218 maturation of RBCL 1; 96.8 0.036 7.9E-07 66.7 17.3 96 369-474 507-604 (1060)
198 KOG1586 Protein required for f 96.8 0.052 1.1E-06 53.4 15.0 142 368-516 72-229 (288)
199 PLN03218 maturation of RBCL 1; 96.7 0.03 6.5E-07 67.4 15.7 63 369-431 579-642 (1060)
200 COG3071 HemY Uncharacterized e 96.7 0.02 4.3E-07 60.1 12.1 82 382-476 307-388 (400)
201 KOG3785 Uncharacterized conser 96.7 0.019 4E-07 59.4 11.6 109 375-484 63-185 (557)
202 KOG3785 Uncharacterized conser 96.6 0.012 2.5E-07 60.8 10.0 86 377-474 30-116 (557)
203 COG4105 ComL DNA uptake lipopr 96.6 0.058 1.3E-06 53.9 14.6 103 400-514 31-148 (254)
204 KOG3824 Huntingtin interacting 96.6 0.0049 1.1E-07 62.4 6.9 63 370-432 117-179 (472)
205 PF12968 DUF3856: Domain of Un 96.6 0.047 1E-06 48.2 11.8 105 372-477 12-128 (144)
206 PF10300 DUF3808: Protein of u 96.6 0.02 4.4E-07 63.0 12.1 88 382-477 246-333 (468)
207 PF03704 BTAD: Bacterial trans 96.5 0.022 4.7E-07 52.0 10.2 93 371-475 8-122 (146)
208 PLN03077 Protein ECB2; Provisi 96.4 0.029 6.3E-07 66.5 13.0 86 375-475 530-615 (857)
209 PRK04841 transcriptional regul 96.3 0.051 1.1E-06 64.6 14.7 101 370-476 453-558 (903)
210 PLN03081 pentatricopeptide (PP 96.3 0.015 3.3E-07 67.1 9.8 93 369-475 360-452 (697)
211 KOG4340 Uncharacterized conser 96.3 0.05 1.1E-06 55.2 11.9 106 368-474 143-266 (459)
212 PLN03077 Protein ECB2; Provisi 96.3 0.06 1.3E-06 63.8 14.7 132 367-516 552-691 (857)
213 COG2976 Uncharacterized protei 96.3 0.026 5.7E-07 54.0 9.3 96 371-480 91-189 (207)
214 PF13431 TPR_17: Tetratricopep 96.3 0.0051 1.1E-07 42.0 3.3 34 425-470 1-34 (34)
215 PLN03081 pentatricopeptide (PP 96.2 0.034 7.5E-07 64.3 12.1 94 368-476 324-418 (697)
216 PF03704 BTAD: Bacterial trans 96.2 0.018 3.8E-07 52.6 7.9 64 370-433 63-126 (146)
217 KOG4642 Chaperone-dependent E3 96.2 0.0093 2E-07 58.6 6.1 77 357-433 32-108 (284)
218 KOG1941 Acetylcholine receptor 96.2 0.055 1.2E-06 56.3 11.8 103 371-475 124-232 (518)
219 PRK04841 transcriptional regul 96.2 0.081 1.7E-06 62.9 15.2 103 371-477 493-601 (903)
220 PF13176 TPR_7: Tetratricopept 96.2 0.0099 2.1E-07 41.0 4.5 28 405-432 1-28 (36)
221 KOG0545 Aryl-hydrocarbon recep 96.1 0.029 6.4E-07 55.4 8.9 100 370-482 179-296 (329)
222 KOG2376 Signal recognition par 96.1 0.08 1.7E-06 58.1 13.0 57 369-425 12-68 (652)
223 KOG2053 Mitochondrial inherita 96.1 0.085 1.8E-06 60.4 13.5 106 377-496 17-122 (932)
224 KOG1308 Hsp70-interacting prot 96.0 0.0068 1.5E-07 62.4 4.4 93 373-477 118-210 (377)
225 COG4785 NlpI Lipoprotein NlpI, 96.0 0.21 4.6E-06 48.8 13.8 103 362-477 92-194 (297)
226 COG0457 NrfG FOG: TPR repeat [ 95.9 0.17 3.7E-06 46.3 13.2 137 368-514 94-234 (291)
227 KOG2610 Uncharacterized conser 95.9 0.085 1.8E-06 54.4 11.5 110 373-491 179-290 (491)
228 PF13181 TPR_8: Tetratricopept 95.8 0.021 4.5E-07 38.3 4.7 30 403-432 1-30 (34)
229 PF05843 Suf: Suppressor of fo 95.8 0.11 2.4E-06 53.2 12.1 132 372-517 4-142 (280)
230 KOG1941 Acetylcholine receptor 95.7 0.052 1.1E-06 56.4 9.1 103 370-478 84-191 (518)
231 PF12569 NARP1: NMDA receptor- 95.6 0.1 2.2E-06 58.1 11.8 113 359-476 218-332 (517)
232 PF10300 DUF3808: Protein of u 95.6 0.062 1.3E-06 59.2 10.1 100 366-476 264-374 (468)
233 PF13181 TPR_8: Tetratricopept 95.6 0.0099 2.1E-07 39.9 2.4 33 370-402 2-34 (34)
234 COG0457 NrfG FOG: TPR repeat [ 95.5 0.46 1E-05 43.4 14.2 134 368-514 58-199 (291)
235 KOG1585 Protein required for f 95.3 0.42 9.1E-06 47.5 13.2 109 364-479 25-140 (308)
236 PF14561 TPR_20: Tetratricopep 95.3 0.19 4.2E-06 42.4 9.7 44 388-431 7-50 (90)
237 KOG3081 Vesicle coat complex C 95.2 0.37 8E-06 48.4 12.7 61 452-517 210-277 (299)
238 KOG2610 Uncharacterized conser 95.1 0.62 1.4E-05 48.3 14.3 103 374-485 108-210 (491)
239 PF09613 HrpB1_HrpK: Bacterial 95.0 0.16 3.5E-06 47.4 9.3 85 370-466 11-95 (160)
240 COG2976 Uncharacterized protei 95.0 1.1 2.5E-05 43.0 15.2 133 369-514 53-191 (207)
241 KOG4555 TPR repeat-containing 94.9 0.45 9.8E-06 42.9 11.3 65 406-482 46-110 (175)
242 KOG1070 rRNA processing protei 94.8 0.65 1.4E-05 55.8 15.5 132 372-514 1533-1666(1710)
243 PF13174 TPR_6: Tetratricopept 94.6 0.025 5.5E-07 37.4 2.1 28 404-431 1-28 (33)
244 PF13174 TPR_6: Tetratricopept 94.5 0.049 1.1E-06 35.9 3.3 31 451-482 2-32 (33)
245 PF05843 Suf: Suppressor of fo 94.3 0.23 5E-06 50.8 9.6 108 367-484 33-141 (280)
246 PF04910 Tcf25: Transcriptiona 94.0 1.8 3.8E-05 46.1 15.7 100 391-492 28-146 (360)
247 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.33 7.1E-06 39.8 7.6 64 369-432 6-72 (80)
248 PF13281 DUF4071: Domain of un 93.8 1.2 2.5E-05 47.5 13.6 62 369-430 179-253 (374)
249 PF13374 TPR_10: Tetratricopep 93.8 0.14 3.1E-06 35.5 4.8 31 403-433 2-32 (42)
250 PF14853 Fis1_TPR_C: Fis1 C-te 93.7 0.13 2.9E-06 38.9 4.7 42 371-412 3-44 (53)
251 PF13176 TPR_7: Tetratricopept 93.6 0.058 1.3E-06 37.1 2.4 32 372-403 2-35 (36)
252 COG3898 Uncharacterized membra 93.6 1.2 2.6E-05 47.1 12.8 134 368-517 119-264 (531)
253 KOG1550 Extracellular protein 93.5 0.78 1.7E-05 51.7 12.6 122 368-513 243-395 (552)
254 TIGR02561 HrpB1_HrpK type III 93.5 0.41 8.8E-06 44.1 8.2 84 371-466 12-95 (153)
255 KOG3081 Vesicle coat complex C 93.4 1.1 2.3E-05 45.2 11.8 105 370-486 170-278 (299)
256 KOG4340 Uncharacterized conser 93.3 0.36 7.8E-06 49.2 8.2 85 378-474 19-103 (459)
257 KOG2796 Uncharacterized conser 93.2 0.73 1.6E-05 46.3 10.1 125 369-510 212-342 (366)
258 KOG1070 rRNA processing protei 93.0 1.7 3.6E-05 52.6 14.2 124 385-514 1440-1596(1710)
259 COG4976 Predicted methyltransf 93.0 0.11 2.5E-06 50.9 4.1 56 377-432 3-58 (287)
260 smart00028 TPR Tetratricopepti 92.8 0.089 1.9E-06 33.0 2.3 28 404-431 2-29 (34)
261 PF10602 RPN7: 26S proteasome 92.7 1.1 2.4E-05 42.6 10.6 99 370-474 37-138 (177)
262 smart00028 TPR Tetratricopepti 92.4 0.22 4.8E-06 31.0 3.9 31 451-482 3-33 (34)
263 KOG3807 Predicted membrane pro 92.3 2.6 5.6E-05 43.8 12.9 101 370-475 188-301 (556)
264 PF09986 DUF2225: Uncharacteri 92.0 1.2 2.6E-05 43.8 10.0 92 383-477 91-193 (214)
265 KOG0551 Hsp90 co-chaperone CNS 91.9 0.76 1.7E-05 47.6 8.6 94 369-474 81-178 (390)
266 KOG1308 Hsp70-interacting prot 91.9 0.15 3.3E-06 52.8 3.6 71 362-432 141-211 (377)
267 KOG2053 Mitochondrial inherita 91.7 6.8 0.00015 45.5 16.5 92 366-470 40-131 (932)
268 KOG2471 TPR repeat-containing 91.5 0.31 6.6E-06 52.7 5.5 120 368-488 239-373 (696)
269 PRK10941 hypothetical protein; 91.4 0.68 1.5E-05 47.2 7.7 60 374-433 186-245 (269)
270 COG4649 Uncharacterized protei 91.3 12 0.00026 35.6 15.1 60 371-430 60-121 (221)
271 PF09613 HrpB1_HrpK: Bacterial 91.2 2.9 6.4E-05 39.1 11.0 99 403-514 10-109 (160)
272 KOG1915 Cell cycle control pro 90.9 12 0.00026 40.8 16.5 123 391-522 310-444 (677)
273 KOG1310 WD40 repeat protein [G 90.8 0.69 1.5E-05 50.5 7.4 106 369-484 374-479 (758)
274 PF07721 TPR_4: Tetratricopept 90.8 0.29 6.2E-06 31.1 2.8 25 404-428 2-26 (26)
275 PF12862 Apc5: Anaphase-promot 90.8 1.8 3.9E-05 36.6 8.6 56 378-433 7-71 (94)
276 PF02259 FAT: FAT domain; Int 90.7 9.3 0.0002 39.6 15.9 115 369-485 146-293 (352)
277 KOG1915 Cell cycle control pro 90.7 8.7 0.00019 41.8 15.2 152 361-522 314-477 (677)
278 KOG4507 Uncharacterized conser 90.7 3.4 7.3E-05 45.9 12.4 155 389-560 199-357 (886)
279 PF04781 DUF627: Protein of un 90.5 1.4 3.1E-05 38.5 7.7 58 375-432 2-73 (111)
280 PF14853 Fis1_TPR_C: Fis1 C-te 90.4 0.52 1.1E-05 35.7 4.4 35 451-486 3-37 (53)
281 KOG0376 Serine-threonine phosp 90.3 0.2 4.2E-06 54.1 2.8 80 358-442 27-106 (476)
282 KOG4507 Uncharacterized conser 90.3 0.7 1.5E-05 51.0 6.9 94 382-488 620-714 (886)
283 KOG0551 Hsp90 co-chaperone CNS 90.3 3.6 7.9E-05 42.8 11.7 78 402-488 80-157 (390)
284 PRK10941 hypothetical protein; 90.1 1.3 2.8E-05 45.1 8.5 70 404-486 182-251 (269)
285 PF12968 DUF3856: Domain of Un 90.1 6 0.00013 35.2 11.2 71 403-474 7-80 (144)
286 PF04184 ST7: ST7 protein; In 89.0 4.5 9.8E-05 44.3 11.7 61 369-429 259-321 (539)
287 PF10602 RPN7: 26S proteasome 88.6 7.5 0.00016 37.0 12.0 65 403-476 36-100 (177)
288 KOG1586 Protein required for f 88.6 12 0.00025 37.4 13.2 112 371-488 115-233 (288)
289 COG3914 Spy Predicted O-linked 88.4 5.2 0.00011 44.5 11.9 105 375-486 73-178 (620)
290 COG3118 Thioredoxin domain-con 88.4 4.1 8.9E-05 41.7 10.4 41 392-432 225-265 (304)
291 PF14561 TPR_20: Tetratricopep 88.3 0.82 1.8E-05 38.5 4.6 71 359-429 12-84 (90)
292 PF10373 EST1_DNA_bind: Est1 D 87.9 0.9 1.9E-05 45.8 5.6 43 388-430 1-43 (278)
293 COG3629 DnrI DNA-binding trans 87.9 1.6 3.5E-05 44.6 7.3 64 369-432 153-216 (280)
294 COG2909 MalT ATP-dependent tra 87.8 13 0.00028 43.5 14.9 101 369-477 415-524 (894)
295 PF08631 SPO22: Meiosis protei 87.5 7.5 0.00016 39.6 12.1 105 380-485 4-122 (278)
296 COG0790 FOG: TPR repeat, SEL1 87.4 9.5 0.00021 38.7 12.8 122 369-513 73-222 (292)
297 COG3898 Uncharacterized membra 87.4 33 0.00072 36.7 16.4 137 380-518 165-331 (531)
298 KOG1585 Protein required for f 87.1 4.5 9.8E-05 40.4 9.5 146 295-474 24-175 (308)
299 COG0790 FOG: TPR repeat, SEL1 87.0 4.6 9.9E-05 41.1 10.3 99 366-478 106-220 (292)
300 PF09986 DUF2225: Uncharacteri 86.9 1.5 3.2E-05 43.2 6.1 63 369-431 118-193 (214)
301 PF07721 TPR_4: Tetratricopept 86.3 0.98 2.1E-05 28.6 3.1 24 451-474 3-26 (26)
302 PF13374 TPR_10: Tetratricopep 86.3 1.3 2.8E-05 30.5 4.0 26 451-476 4-29 (42)
303 KOG2300 Uncharacterized conser 86.2 19 0.00042 39.4 14.2 110 369-484 7-123 (629)
304 KOG3824 Huntingtin interacting 86.0 2.3 5.1E-05 43.7 7.1 59 459-525 126-193 (472)
305 KOG2047 mRNA splicing factor [ 85.9 23 0.0005 40.1 15.0 132 369-513 425-581 (835)
306 KOG3364 Membrane protein invol 85.1 4.6 9.9E-05 36.7 7.7 73 403-486 32-107 (149)
307 KOG3617 WD40 and TPR repeat-co 84.9 8.9 0.00019 44.4 11.5 79 374-474 805-883 (1416)
308 KOG3617 WD40 and TPR repeat-co 84.8 3.7 8E-05 47.3 8.5 104 371-474 860-992 (1416)
309 PF08631 SPO22: Meiosis protei 84.7 9.8 0.00021 38.8 11.3 84 414-501 4-94 (278)
310 TIGR02561 HrpB1_HrpK type III 84.7 13 0.00028 34.4 10.6 97 405-514 12-109 (153)
311 KOG2047 mRNA splicing factor [ 84.2 22 0.00048 40.2 13.9 160 371-544 389-588 (835)
312 PF13281 DUF4071: Domain of un 83.4 8 0.00017 41.2 10.1 110 365-477 213-333 (374)
313 KOG1914 mRNA cleavage and poly 83.4 26 0.00055 39.0 13.8 73 359-432 10-82 (656)
314 PF07079 DUF1347: Protein of u 83.3 3.9 8.5E-05 44.2 7.6 58 371-429 464-521 (549)
315 KOG1550 Extracellular protein 83.0 5.8 0.00013 44.7 9.5 93 371-479 290-394 (552)
316 PF08424 NRDE-2: NRDE-2, neces 83.0 24 0.00051 36.9 13.5 74 359-432 9-94 (321)
317 KOG2396 HAT (Half-A-TPR) repea 82.6 16 0.00035 40.1 11.9 93 389-493 91-183 (568)
318 PF12862 Apc5: Anaphase-promot 82.5 8.9 0.00019 32.2 8.3 61 413-476 8-68 (94)
319 KOG2300 Uncharacterized conser 82.4 18 0.0004 39.5 12.2 160 297-474 258-429 (629)
320 PF10516 SHNi-TPR: SHNi-TPR; 81.4 2.5 5.5E-05 29.6 3.7 30 404-433 2-31 (38)
321 COG3914 Spy Predicted O-linked 81.3 22 0.00047 39.8 12.5 124 383-519 45-179 (620)
322 PF08424 NRDE-2: NRDE-2, neces 80.9 21 0.00045 37.3 12.1 92 389-493 5-108 (321)
323 PF07720 TPR_3: Tetratricopept 80.5 2.3 5E-05 29.4 3.2 23 404-426 2-24 (36)
324 KOG2471 TPR repeat-containing 80.2 3.9 8.4E-05 44.5 6.3 98 375-476 212-310 (696)
325 PF14863 Alkyl_sulf_dimr: Alky 79.3 3.1 6.8E-05 38.1 4.7 52 368-419 69-120 (141)
326 COG4976 Predicted methyltransf 79.1 3.1 6.7E-05 41.2 4.8 62 411-485 3-64 (287)
327 COG3947 Response regulator con 78.1 5.2 0.00011 41.0 6.1 58 375-432 285-342 (361)
328 PRK15180 Vi polysaccharide bio 78.0 27 0.00059 38.2 11.7 95 368-474 288-382 (831)
329 PF10579 Rapsyn_N: Rapsyn N-te 77.8 12 0.00026 30.8 7.0 62 404-474 7-68 (80)
330 KOG0276 Vesicle coat complex C 77.5 16 0.00034 41.0 10.0 102 367-477 638-748 (794)
331 COG4649 Uncharacterized protei 77.2 46 0.001 31.8 11.6 97 370-477 95-195 (221)
332 PF04053 Coatomer_WDAD: Coatom 76.2 11 0.00024 41.3 8.6 54 368-429 320-373 (443)
333 COG2912 Uncharacterized conser 76.1 4.2 9.1E-05 41.2 4.9 57 377-433 189-245 (269)
334 KOG0985 Vesicle coat protein c 75.8 52 0.0011 39.4 13.8 133 400-558 1101-1237(1666)
335 PF10255 Paf67: RNA polymerase 75.5 5.5 0.00012 42.9 5.9 114 305-432 72-193 (404)
336 PF11817 Foie-gras_1: Foie gra 74.1 31 0.00068 34.5 10.8 83 386-474 155-243 (247)
337 PF11207 DUF2989: Protein of u 73.9 9.6 0.00021 37.1 6.5 56 368-424 140-199 (203)
338 KOG2041 WD40 repeat protein [G 73.6 63 0.0014 37.1 13.4 34 396-429 845-878 (1189)
339 KOG0530 Protein farnesyltransf 73.5 54 0.0012 33.4 11.7 142 381-523 55-228 (318)
340 PF04910 Tcf25: Transcriptiona 72.5 44 0.00096 35.6 11.9 106 358-474 29-164 (360)
341 PF04781 DUF627: Protein of un 72.1 28 0.00061 30.5 8.4 68 456-524 3-86 (111)
342 KOG2422 Uncharacterized conser 71.3 1.8E+02 0.004 32.8 16.9 163 396-561 277-463 (665)
343 smart00386 HAT HAT (Half-A-TPR 71.1 6.4 0.00014 25.1 3.4 30 383-412 1-30 (33)
344 PF07720 TPR_3: Tetratricopept 70.1 10 0.00022 26.2 4.2 30 452-482 4-35 (36)
345 PRK13184 pknD serine/threonine 69.8 36 0.00079 40.8 11.4 99 374-486 480-588 (932)
346 COG2912 Uncharacterized conser 68.5 17 0.00037 36.9 7.2 68 406-486 184-251 (269)
347 KOG1258 mRNA processing protei 68.5 78 0.0017 35.6 12.8 98 376-485 304-401 (577)
348 PF10255 Paf67: RNA polymerase 68.0 19 0.00041 38.9 7.9 67 405-477 124-192 (404)
349 PF02259 FAT: FAT domain; Int 67.2 64 0.0014 33.3 11.7 72 398-477 141-212 (352)
350 PF11421 Synthase_beta: ATP sy 66.8 4.9 0.00011 29.4 2.1 17 1-17 1-17 (49)
351 PF15015 NYD-SP12_N: Spermatog 66.6 22 0.00048 38.3 7.8 74 414-488 187-266 (569)
352 cd02680 MIT_calpain7_2 MIT: do 66.3 6.7 0.00014 31.9 3.1 34 385-433 3-36 (75)
353 KOG4814 Uncharacterized conser 65.5 23 0.00051 40.0 8.0 66 413-485 364-429 (872)
354 COG4455 ImpE Protein of avirul 64.5 45 0.00098 33.0 8.9 57 376-432 8-64 (273)
355 cd02681 MIT_calpain7_1 MIT: do 64.2 9.6 0.00021 31.1 3.7 32 387-433 5-36 (76)
356 KOG3364 Membrane protein invol 63.9 44 0.00095 30.6 8.1 73 359-431 22-99 (149)
357 KOG0530 Protein farnesyltransf 63.8 26 0.00057 35.5 7.3 71 360-431 70-141 (318)
358 KOG4814 Uncharacterized conser 63.4 26 0.00057 39.6 7.9 91 372-474 357-453 (872)
359 COG1422 Predicted membrane pro 63.2 18 0.0004 34.9 5.9 40 123-164 47-87 (201)
360 COG3629 DnrI DNA-binding trans 63.0 51 0.0011 33.8 9.5 65 401-477 151-215 (280)
361 cd02682 MIT_AAA_Arch MIT: doma 63.0 14 0.00031 30.1 4.4 28 369-396 6-33 (75)
362 PRK11619 lytic murein transgly 62.4 41 0.00089 38.7 9.8 79 385-476 295-373 (644)
363 COG5191 Uncharacterized conser 62.3 31 0.00067 35.8 7.7 90 391-492 95-184 (435)
364 PF07079 DUF1347: Protein of u 60.7 1.5E+02 0.0033 32.5 12.8 37 371-407 381-418 (549)
365 PF11207 DUF2989: Protein of u 60.7 24 0.00051 34.4 6.3 75 386-470 123-199 (203)
366 cd02682 MIT_AAA_Arch MIT: doma 60.3 18 0.00039 29.4 4.6 27 407-433 10-36 (75)
367 KOG0686 COP9 signalosome, subu 60.2 1.3E+02 0.0028 32.5 12.0 144 372-522 153-315 (466)
368 KOG0985 Vesicle coat protein c 58.9 2E+02 0.0042 34.9 13.9 60 368-432 1103-1162(1666)
369 PF10516 SHNi-TPR: SHNi-TPR; 58.0 8.9 0.00019 26.9 2.2 29 370-398 2-30 (38)
370 PF10345 Cohesin_load: Cohesin 57.9 66 0.0014 36.7 10.5 102 369-473 301-428 (608)
371 PF07219 HemY_N: HemY protein 57.3 26 0.00057 30.3 5.5 50 369-418 59-108 (108)
372 KOG1497 COP9 signalosome, subu 56.3 89 0.0019 32.7 9.7 67 405-476 105-171 (399)
373 cd02683 MIT_1 MIT: domain cont 56.1 16 0.00034 29.9 3.7 21 413-433 16-36 (77)
374 PF10952 DUF2753: Protein of u 55.7 1.6E+02 0.0034 26.6 10.4 106 406-515 4-116 (140)
375 KOG1310 WD40 repeat protein [G 55.0 17 0.00038 40.1 4.7 69 361-429 400-471 (758)
376 KOG1839 Uncharacterized protei 54.9 56 0.0012 40.0 9.3 103 369-475 973-1083(1236)
377 KOG2041 WD40 repeat protein [G 54.7 98 0.0021 35.7 10.4 25 450-474 797-821 (1189)
378 KOG1464 COP9 signalosome, subu 53.1 75 0.0016 32.5 8.5 52 416-475 40-91 (440)
379 COG3947 Response regulator con 52.9 93 0.002 32.2 9.2 106 357-477 232-341 (361)
380 KOG3783 Uncharacterized conser 52.8 78 0.0017 35.3 9.3 73 399-477 444-518 (546)
381 KOG2168 Cullins [Cell cycle co 52.6 3.3E+02 0.0072 32.1 14.6 170 297-485 555-741 (835)
382 PF10345 Cohesin_load: Cohesin 52.5 1.3E+02 0.0029 34.3 11.8 104 370-474 362-478 (608)
383 PF09670 Cas_Cas02710: CRISPR- 51.8 2.4E+02 0.0051 30.3 12.9 61 371-431 133-197 (379)
384 KOG2561 Adaptor protein NUB1, 51.7 60 0.0013 35.2 8.0 105 370-475 164-293 (568)
385 PF01956 DUF106: Integral memb 51.5 45 0.00098 31.2 6.6 18 119-136 12-29 (168)
386 KOG1538 Uncharacterized conser 51.3 17 0.00036 41.1 3.9 50 301-351 664-719 (1081)
387 PF09477 Type_III_YscG: Bacter 49.1 1.4E+02 0.003 26.3 8.4 87 374-477 11-97 (116)
388 cd02678 MIT_VPS4 MIT: domain c 48.3 23 0.0005 28.5 3.5 21 413-433 16-36 (75)
389 cd02681 MIT_calpain7_1 MIT: do 48.0 19 0.00042 29.3 3.0 30 369-398 6-35 (76)
390 KOG1839 Uncharacterized protei 47.5 95 0.0021 38.1 9.6 111 362-476 925-1042(1236)
391 cd02684 MIT_2 MIT: domain cont 47.3 23 0.00049 28.8 3.3 33 386-433 4-36 (75)
392 PF11846 DUF3366: Domain of un 47.2 41 0.00089 32.1 5.7 44 387-431 129-172 (193)
393 PF12854 PPR_1: PPR repeat 46.9 36 0.00078 22.8 3.7 24 451-474 9-32 (34)
394 COG2909 MalT ATP-dependent tra 46.9 1.4E+02 0.003 35.3 10.5 100 369-474 458-564 (894)
395 PF12854 PPR_1: PPR repeat 46.6 42 0.00092 22.4 4.0 27 402-428 6-32 (34)
396 PF08238 Sel1: Sel1 repeat; I 46.6 39 0.00085 22.6 4.0 29 403-431 1-36 (39)
397 cd02677 MIT_SNX15 MIT: domain 45.8 18 0.00038 29.4 2.4 33 386-433 4-36 (75)
398 KOG2396 HAT (Half-A-TPR) repea 44.7 77 0.0017 35.1 7.6 67 366-432 102-169 (568)
399 TIGR03504 FimV_Cterm FimV C-te 44.6 26 0.00055 25.4 2.8 23 374-396 4-26 (44)
400 KOG3807 Predicted membrane pro 44.5 2.5E+02 0.0054 29.7 10.8 104 406-522 278-402 (556)
401 PF04190 DUF410: Protein of un 43.9 62 0.0013 32.7 6.6 28 401-428 88-115 (260)
402 cd02683 MIT_1 MIT: domain cont 43.7 23 0.0005 28.9 2.8 29 369-397 6-34 (77)
403 TIGR03504 FimV_Cterm FimV C-te 43.7 41 0.0009 24.3 3.8 26 406-431 2-27 (44)
404 PF04212 MIT: MIT (microtubule 43.6 56 0.0012 25.6 5.0 27 407-433 9-35 (69)
405 cd02656 MIT MIT: domain contai 43.3 27 0.00058 28.0 3.1 21 413-433 16-36 (75)
406 KOG0739 AAA+-type ATPase [Post 42.5 60 0.0013 33.7 6.0 17 458-474 61-77 (439)
407 KOG0890 Protein kinase of the 42.5 3.3E+02 0.0071 36.0 13.4 116 385-514 1645-1787(2382)
408 PF04212 MIT: MIT (microtubule 42.4 26 0.00057 27.5 2.9 29 369-397 5-33 (69)
409 TIGR02996 rpt_mate_G_obs repea 41.4 59 0.0013 23.4 4.1 33 390-422 3-35 (42)
410 smart00671 SEL1 Sel1-like repe 41.2 43 0.00094 21.8 3.5 28 404-431 2-33 (36)
411 PF09797 NatB_MDM20: N-acetylt 39.5 56 0.0012 34.6 5.8 46 384-429 198-243 (365)
412 PF05053 Menin: Menin; InterP 39.3 1.2E+02 0.0026 34.1 8.2 65 368-432 276-347 (618)
413 TIGR00985 3a0801s04tom mitocho 39.2 1.4E+02 0.0031 27.6 7.5 46 437-483 78-124 (148)
414 cd02680 MIT_calpain7_2 MIT: do 39.1 25 0.00055 28.6 2.3 30 369-398 6-35 (75)
415 PF15015 NYD-SP12_N: Spermatog 38.7 59 0.0013 35.2 5.5 58 373-430 232-289 (569)
416 PF10373 EST1_DNA_bind: Est1 D 38.7 71 0.0015 31.8 6.1 49 422-482 1-49 (278)
417 cd02679 MIT_spastin MIT: domai 38.5 57 0.0012 26.8 4.4 21 413-433 18-38 (79)
418 KOG3616 Selective LIM binding 38.3 1.8E+02 0.0039 33.8 9.4 114 360-474 986-1104(1636)
419 KOG3783 Uncharacterized conser 38.1 1.4E+02 0.0031 33.3 8.5 58 372-429 452-517 (546)
420 PF09205 DUF1955: Domain of un 38.1 1.2E+02 0.0026 27.8 6.6 62 370-431 86-148 (161)
421 PF04053 Coatomer_WDAD: Coatom 37.4 1.3E+02 0.0029 32.9 8.4 97 355-477 333-429 (443)
422 smart00299 CLH Clathrin heavy 36.8 2E+02 0.0043 25.4 8.2 48 379-427 17-64 (140)
423 cd02678 MIT_VPS4 MIT: domain c 36.3 38 0.00082 27.2 3.0 29 369-397 6-34 (75)
424 COG4455 ImpE Protein of avirul 36.0 3.3E+02 0.0071 27.2 9.7 63 413-488 11-73 (273)
425 smart00745 MIT Microtubule Int 34.1 44 0.00095 26.7 3.0 21 413-433 18-38 (77)
426 COG5107 RNA14 Pre-mRNA 3'-end 34.0 6.9E+02 0.015 27.7 12.5 176 366-545 299-533 (660)
427 KOG0546 HSP90 co-chaperone CPR 33.6 52 0.0011 34.8 4.1 57 375-431 281-337 (372)
428 PF10952 DUF2753: Protein of u 33.1 1.3E+02 0.0028 27.1 5.9 69 371-440 3-86 (140)
429 PRK15490 Vi polysaccharide bio 32.9 99 0.0021 35.0 6.5 66 362-429 35-100 (578)
430 KOG1538 Uncharacterized conser 32.4 68 0.0015 36.5 4.9 50 372-429 750-799 (1081)
431 KOG2581 26S proteasome regulat 32.1 3.5E+02 0.0076 29.4 9.9 108 368-484 168-281 (493)
432 cd02684 MIT_2 MIT: domain cont 31.9 46 0.001 26.9 2.8 30 369-398 6-35 (75)
433 KOG2908 26S proteasome regulat 31.6 3.4E+02 0.0073 28.8 9.5 58 414-477 86-143 (380)
434 cd02679 MIT_spastin MIT: domai 30.8 46 0.001 27.4 2.6 27 371-397 10-36 (79)
435 PF11817 Foie-gras_1: Foie gra 30.7 1.2E+02 0.0025 30.4 6.1 56 368-423 177-238 (247)
436 COG2015 Alkyl sulfatase and re 30.3 98 0.0021 34.1 5.6 55 369-423 452-506 (655)
437 PF13041 PPR_2: PPR repeat fam 30.1 93 0.002 22.3 4.0 31 402-432 2-32 (50)
438 PF10938 YfdX: YfdX protein; 29.7 3.9E+02 0.0084 24.8 9.0 100 371-475 4-143 (155)
439 PF01239 PPTA: Protein prenylt 29.5 1.2E+02 0.0026 19.6 4.0 28 388-415 2-29 (31)
440 KOG4521 Nuclear pore complex, 29.4 5.2E+02 0.011 31.9 11.5 30 457-486 991-1020(1480)
441 KOG4056 Translocase of outer m 29.2 1.3E+02 0.0028 27.4 5.4 46 438-484 70-115 (143)
442 cd02656 MIT MIT: domain contai 29.0 60 0.0013 25.9 3.0 28 370-397 7-34 (75)
443 TIGR00756 PPR pentatricopeptid 28.9 90 0.0019 19.7 3.4 21 455-475 6-26 (35)
444 KOG0292 Vesicle coat complex C 28.6 1.2E+02 0.0027 35.7 6.3 30 400-429 669-698 (1202)
445 KOG1914 mRNA cleavage and poly 28.6 6.9E+02 0.015 28.3 11.7 70 393-475 10-79 (656)
446 PRK11619 lytic murein transgly 28.4 1.3E+02 0.0027 34.8 6.6 101 377-477 320-435 (644)
447 smart00745 MIT Microtubule Int 28.3 1.2E+02 0.0027 24.0 4.8 11 420-430 6-16 (77)
448 COG3014 Uncharacterized protei 28.1 7.6E+02 0.016 26.3 13.9 89 388-476 40-152 (449)
449 PHA02537 M terminase endonucle 28.1 2.1E+02 0.0045 28.6 7.2 21 379-399 93-113 (230)
450 PF01535 PPR: PPR repeat; Int 27.9 77 0.0017 19.6 2.9 25 406-430 3-27 (31)
451 KOG0890 Protein kinase of the 26.4 5.5E+02 0.012 34.1 11.7 64 368-433 1669-1732(2382)
452 COG1747 Uncharacterized N-term 26.3 9.8E+02 0.021 27.0 14.8 62 369-432 99-160 (711)
453 KOG0739 AAA+-type ATPase [Post 26.2 1.5E+02 0.0032 31.0 5.8 56 369-432 10-71 (439)
454 cd02677 MIT_SNX15 MIT: domain 25.4 62 0.0013 26.2 2.5 30 369-398 6-35 (75)
455 PRK13184 pknD serine/threonine 25.3 2.8E+02 0.0062 33.5 8.8 64 369-432 512-581 (932)
456 PF11846 DUF3366: Domain of un 25.2 2.5E+02 0.0055 26.6 7.2 31 451-482 146-176 (193)
457 KOG1258 mRNA processing protei 25.2 8.9E+02 0.019 27.5 12.0 80 386-477 62-142 (577)
458 PF02064 MAS20: MAS20 protein 24.4 69 0.0015 28.6 2.8 29 373-401 67-95 (121)
459 KOG4563 Cell cycle-regulated h 23.4 1.1E+02 0.0025 32.4 4.5 59 368-426 40-106 (400)
460 COG4941 Predicted RNA polymera 23.1 91 0.002 32.8 3.7 60 373-432 333-394 (415)
461 PF07219 HemY_N: HemY protein 22.6 3E+02 0.0066 23.6 6.5 25 407-431 63-87 (108)
462 PF05053 Menin: Menin; InterP 22.4 7E+02 0.015 28.3 10.4 70 401-477 275-346 (618)
463 KOG1239 Inner membrane protein 22.2 2E+02 0.0042 30.9 6.2 147 189-336 4-152 (372)
464 PF13812 PPR_3: Pentatricopept 22.2 1.6E+02 0.0036 18.5 3.8 23 453-475 5-27 (34)
465 KOG0529 Protein geranylgeranyl 22.1 7.4E+02 0.016 26.9 10.3 94 384-486 90-185 (421)
466 KOG2422 Uncharacterized conser 21.7 1.2E+03 0.027 26.5 13.1 148 366-528 281-466 (665)
467 KOG4056 Translocase of outer m 21.6 2E+02 0.0043 26.3 5.1 33 372-404 84-116 (143)
468 PHA01081 putative minor coat p 21.2 1.7E+02 0.0038 25.2 4.4 25 117-141 74-100 (104)
469 PRK15490 Vi polysaccharide bio 21.1 3.7E+02 0.008 30.6 8.3 83 378-474 17-99 (578)
470 KOG0687 26S proteasome regulat 21.0 9.2E+02 0.02 25.6 10.3 48 385-432 80-133 (393)
471 PF08311 Mad3_BUB1_I: Mad3/BUB 21.0 2.9E+02 0.0063 24.5 6.2 44 387-430 81-126 (126)
472 KOG2114 Vacuolar assembly/sort 20.3 6.8E+02 0.015 29.8 10.1 32 451-482 370-401 (933)
473 KOG0546 HSP90 co-chaperone CPR 20.2 1.3E+02 0.0028 31.9 4.1 55 364-418 304-358 (372)
474 PRK10316 hypothetical protein; 20.2 7.9E+02 0.017 24.1 9.2 108 360-474 45-194 (209)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=6.7e-42 Score=342.03 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------cHHHHHHH
Q 008435 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK------RFVDQISL 177 (565)
Q Consensus 104 ~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k------~~~e~~~l 177 (565)
+..+.++|+++|..+|.|||++|+++|+++|++++|++++|+|+++||++++||++++++||++++ .++|++++
T Consensus 41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~L 120 (255)
T PRK02944 41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQL 120 (255)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999886532 25688889
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHH
Q 008435 178 FRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNV 257 (565)
Q Consensus 178 ~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~ 257 (565)
|||+ ||+|+. .++|+++|+|||+++|.++|++. ++.++||+|| ||+.+|| ++|||++++++++++.
T Consensus 121 yk~~----gvnP~~-g~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~~ 186 (255)
T PRK02944 121 FQKN----GVNPLA-GCLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQQ 186 (255)
T ss_pred HHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHHH
Confidence 9997 788874 67999999999999999999985 5788999999 9999999 8999999999999998
Q ss_pred HHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHhCC
Q 008435 258 QLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331 (565)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l~i 331 (565)
+++..... + .+ ..++.+++++++.+++++.++|+|+.+||++||+|+++|++++++|.+|+..+-
T Consensus 187 ~~~~~~~~----~--~~---~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~ 251 (255)
T PRK02944 187 KLMMAGTA----G--QN---PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAG 251 (255)
T ss_pred HhcccCCC----C--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcC
Confidence 87543211 1 11 124556777777777788999999999999999999999999999999987764
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2e-41 Score=332.69 Aligned_cols=191 Identities=19% Similarity=0.275 Sum_probs=166.3
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHHhhhcCCCchhHHH
Q 008435 117 FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFI 194 (565)
Q Consensus 117 ~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l~~k~~~~~g~~~~~~~~ 194 (565)
.+|+|||++|+++|+++|++++|++++|+|+++||++++||++++++|+++++ .++|++++|||+ ||+|+. .+
T Consensus 26 ~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~inp~~-~~ 100 (223)
T PRK00145 26 NPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----GVNPLG-GC 100 (223)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----CCCchH-HH
Confidence 35899999999999999999999999999999999999999999999887654 367899999997 788874 67
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhh
Q 008435 195 ASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLG 274 (565)
Q Consensus 195 lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (565)
+|+++|+|||+++|+++|+++ ++.++|++||+||+.+|| ++|||++++++++++.+++.+.. . .+
T Consensus 101 lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~~---~--~~-- 165 (223)
T PRK00145 101 LPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKAD---S--SQ-- 165 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCCC---h--hH--
Confidence 999999999999999999986 578899999999999999 89999999999999998875431 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHh
Q 008435 275 LLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329 (565)
Q Consensus 275 ~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l 329 (565)
.+.++.+++++++.+++++.++|+|+++||++||+|+++|++++|++..||..
T Consensus 166 --~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~~ 218 (223)
T PRK00145 166 --AGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKKV 218 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 23456677777777778889999999999999999999999999887766653
No 3
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.6e-39 Score=313.95 Aligned_cols=191 Identities=29% Similarity=0.492 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008435 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (565)
Q Consensus 121 pW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l~~k~~~~~g~~~~~~~~lp~l 198 (565)
+||++|+++|+++|++++|++++|+|+++||++++||++++++|+++++ .++|++++|||+ ||+|++ .++|++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~-~~~~~l 76 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLK-GCLPPL 76 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHH-HHHHHH
Confidence 8999999999999999999999999999999999999999999886543 367888889986 899884 678999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCC--cchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHH
Q 008435 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH--GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLL 276 (565)
Q Consensus 199 iQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp--~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (565)
+|+|||+++|.++|+|+. +|++.++|++||+||+.+|| +.+++|||++++++++++++++.+ ....+ +.. .
T Consensus 77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p~~iLPil~~~~~~~~~~~~~~-~~~~~-~~~---~ 149 (198)
T PF02096_consen 77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLPYFILPILAGASMFLNQELSMK-NSKQK-SPQ---Q 149 (198)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHh-ccccC-Ccc---c
Confidence 999999999999999986 78999999999999999992 112899999999999999999875 21111 111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435 277 AKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (565)
Q Consensus 277 ~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~ 323 (565)
.+.+|.+++++++.+++++.++|+|+.+||++||+|+++|++++|++
T Consensus 150 ~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~ 196 (198)
T PF02096_consen 150 AKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP 196 (198)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23456666677777778889999999999999999999999999875
No 4
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=6e-39 Score=321.24 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCccc-------HH
Q 008435 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------FV 172 (565)
Q Consensus 104 ~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~----~~k~~~l~P~l~~i~~~~~~~k~-------~~ 172 (565)
+..+.++++++|+.+|.|||++|+++|+++|++++|++++|+|+ ++||++++|+++++++||+++++ ++
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~ 121 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK 121 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence 45566899999999999999999999999999999999999999 88999999999999998865433 45
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHH
Q 008435 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL 252 (565)
Q Consensus 173 e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~ 252 (565)
|++++|||+ ||+|+...++|+++|+|||+++|+++|++ |++.++||+|| ||+.+| +|||++++++
T Consensus 122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~ 186 (256)
T PRK01622 122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT 186 (256)
T ss_pred HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence 677888886 78887657799999999999999999997 47889999999 999988 6999999999
Q ss_pred HHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435 253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (565)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~ 323 (565)
++++++++..... ++.+ .+.+|.+++++++.+++++.++|+|+++||++||+|+++|++++++.
T Consensus 187 ~~~~~~~~~~~~~----~~~q---~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~ 250 (256)
T PRK01622 187 YFIQMKVSQSNGT----SPEQ---VQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250 (256)
T ss_pred HHHHHHHcCCCCC----ChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987753211 1111 23456667777777788889999999999999999999999999765
No 5
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=4.1e-39 Score=307.59 Aligned_cols=179 Identities=26% Similarity=0.442 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc--HHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008435 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR--FVDQISLFRREKRAAGCPSLLWFIASFA 198 (565)
Q Consensus 121 pW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k~--~~e~~~l~~k~~~~~g~~~~~~~~lp~l 198 (565)
+||++|+++|+++|++++|++++|+|+++||++++||++++++|++++++ ++|++++|||+ ||+|+. .++|++
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~-~~lp~l 75 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLG-GCLPLL 75 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHH-HHHHHH
Confidence 69999999999999999999999999999999999999999998876543 57889999987 788875 578999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHH
Q 008435 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278 (565)
Q Consensus 199 iQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 278 (565)
+|+|||+++|.++|++. ++.++|++||+||+.+|| +++||++++++++++.+++....+ ++ +
T Consensus 76 iQ~Pif~~~~~~lr~~~-----~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~~----~~------~ 137 (181)
T TIGR03592 76 IQMPIFIALYQVLRRSI-----ELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGPP----DP------A 137 (181)
T ss_pred HHHHHHHHHHHHHHhhH-----HhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCCC----CH------H
Confidence 99999999999999974 789999999999999999 899999999999999998755321 11 2
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcC
Q 008435 279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322 (565)
Q Consensus 279 ~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~ 322 (565)
.+|.+++++++.+++++.++|+|+.+||++||+|+++|++++|.
T Consensus 138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 24555667777777788999999999999999999999999863
No 6
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=6.9e-39 Score=326.46 Aligned_cols=212 Identities=20% Similarity=0.269 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCccc-------H
Q 008435 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------F 171 (565)
Q Consensus 103 P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~----~~k~~~l~P~l~~i~~~~~~~k~-------~ 171 (565)
-+..+.++++++|+.+|++||++|+++|++||++++|++++|+++ ++||+.++||++++++||+++++ +
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q 120 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ 120 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence 456677899999999999999999999999999999999988875 68999999999999999876432 4
Q ss_pred HHHHHHHHHHhhhcCCCchhH-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHH
Q 008435 172 VDQISLFRREKRAAGCPSLLW-FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMA 250 (565)
Q Consensus 172 ~e~~~l~~k~~~~~g~~~~~~-~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~ 250 (565)
+|++++|||+ |++|+.. .++|+++|+|||+++|+++|.. |++.+++|+|| ||+.+ +++||++++
T Consensus 121 ~em~~lyke~----ginp~~~~GCLP~LIQ~PIf~aly~ai~~~-----~~l~~~~flwi-dL~~p-----~~iLpii~~ 185 (307)
T PRK02463 121 TELMAAQREN----GISMLGGIGCLPLLIQMPFFSALYFAAQYT-----KGVSTSTFLGI-DLGSP-----SLVLTAIIG 185 (307)
T ss_pred HHHHHHHHHc----CCCCccccchHHHHHHHHHHHHHHHHHhcc-----hhhccCCeeee-ecCch-----hHHHHHHHH
Confidence 6788999997 4555432 2489999999999999999853 68999999999 99875 479999999
Q ss_pred HHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhc---CHHHHh
Q 008435 251 GLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPASRT 327 (565)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~---~~~~rk 327 (565)
++++++.+++....+ .+ ..+.||.|++++++++++++.++|+|+.+||++||+|+++|+++++ +|.+|+
T Consensus 186 v~~~~q~~~~~~~~~--~~------q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk~~~ 257 (307)
T PRK02463 186 VLYFFQSWLSMMGVP--EE------QREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPRLRK 257 (307)
T ss_pred HHHHHHHHHhccCCC--hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999987654321 11 1245677888999999999999999999999999999999999976 788888
Q ss_pred HhCCCCCCCC
Q 008435 328 MLGLPDKVVP 337 (565)
Q Consensus 328 ~l~ip~~~~~ 337 (565)
...-..+.+|
T Consensus 258 ~i~~e~~~~p 267 (307)
T PRK02463 258 QIAEEFAKNP 267 (307)
T ss_pred HHHHHhhcCC
Confidence 7644444444
No 7
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=1.1e-38 Score=346.53 Aligned_cols=200 Identities=20% Similarity=0.325 Sum_probs=171.1
Q ss_pred CcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHH
Q 008435 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISL 177 (565)
Q Consensus 100 ~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l 177 (565)
+++.+..+.++|+++|.++| |||++||++|+++|++++|++++|.|+++||++++|+++++++|+++++ .++|+|++
T Consensus 302 ~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~e~~~L 380 (521)
T PRK01318 302 LWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQEMMEL 380 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 34468889999999999999 9999999999999999999999999999999999999999999987664 47899999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCcc-ccccCCCCCCcchhhHH-----HHHHHH
Q 008435 178 FRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF-----PVLMAG 251 (565)
Q Consensus 178 ~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~l-Wf~dLt~~Dp~~~~~iL-----Pil~~~ 251 (565)
|||+ ||+|+. .++|+++|+||||++|.+++.+. .+..++|+ ||+||+.+|| ++|| |+++++
T Consensus 381 YKk~----~vnPl~-gclp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~lPil~~~ 447 (521)
T PRK01318 381 YKKE----KVNPLG-GCLPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLLPILMGI 447 (521)
T ss_pred HHHc----CCCccc-hhHHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHHHHHHHH
Confidence 9998 566653 45999999999999999999986 46677887 9999999999 7788 999999
Q ss_pred HHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHH
Q 008435 252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325 (565)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~ 325 (565)
+++++++++... ++ +. ++++|.+|++.+++++.++|+|+++||++||+++++|++++++...
T Consensus 448 ~~~~~~~l~~~~------~~---~~---q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~ 509 (521)
T PRK01318 448 TMFLQQKLNPTP------TD---PM---QAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLE 509 (521)
T ss_pred HHHHHHHhcCCC------CC---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999887432 11 11 2334555777777788999999999999999999999999976543
No 8
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.1e-37 Score=339.48 Aligned_cols=201 Identities=18% Similarity=0.309 Sum_probs=164.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHHhhh
Q 008435 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRA 184 (565)
Q Consensus 107 i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k--~~~e~~~l~~k~~~~ 184 (565)
+.+++.++|..+| |||++||++||+||++++|++++|+++++||+.++|+|++|++||++++ .++|+|++|||+
T Consensus 562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~--- 637 (795)
T PRK01001 562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTN--- 637 (795)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHc---
Confidence 3566688999999 9999999999999999999999999999999999999999999998764 478999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCcc--ccccCCCCCCcc-----------hhhHHHHHHHH
Q 008435 185 AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLMAG 251 (565)
Q Consensus 185 ~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~l--Wf~dLt~~Dp~~-----------~~~iLPil~~~ 251 (565)
||+|+ ..++|+|+|+||||++|+++|++. .+...+|+ |++||+.+||.+ .+.||||++++
T Consensus 638 -GVNPl-~GCLPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILmgv 710 (795)
T PRK01001 638 -KVNPI-TGCLPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILLGV 710 (795)
T ss_pred -CCCch-HHHHHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHHHH
Confidence 56655 355999999999999999999976 45556676 999999999832 13499999999
Q ss_pred HHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435 252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (565)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~ 323 (565)
+++++++++..... +..+++ .+.++.|+.+|+++++|++.++|+||++||++||+++++|++++++.
T Consensus 711 tmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~ 777 (795)
T PRK01001 711 VMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI 777 (795)
T ss_pred HHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 99999998764321 111111 11223444567777777889999999999999999999999999764
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.9e-36 Score=307.49 Aligned_cols=217 Identities=19% Similarity=0.261 Sum_probs=168.3
Q ss_pred CCCcchHHHHHHHHHHHh-----hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc--
Q 008435 98 EESSLPVRALISFLDTYH-----DFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR-- 170 (565)
Q Consensus 98 ~~~~~P~~~i~~~L~~lh-----~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k~-- 170 (565)
+.+|+|++++.++++.++ ..+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++||++++.
T Consensus 3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~ 82 (304)
T PRK03449 3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM 82 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence 568999999998888754 4589999999999999999999999999999999999999999999998876543
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC----CCCc----------------ccCcc--
Q 008435 171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIW-- 228 (565)
Q Consensus 171 ~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~----~~l~----------------~~g~l-- 228 (565)
++|++++|||+ ||+|+ ..++|+++|+|||+++|+++|+|+.... ++.+ .++|+
T Consensus 83 ~~e~~~Lyk~~----gvnP~-~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~ 157 (304)
T PRK03449 83 ALEMQKLQKEH----GFNPI-LGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA 157 (304)
T ss_pred HHHHHHHHHHc----CCCch-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence 67899999997 78877 4679999999999999999999854210 1110 01344
Q ss_pred ---------ccc----------cCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHH
Q 008435 229 ---------WFQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL 289 (565)
Q Consensus 229 ---------Wf~----------dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l 289 (565)
|++ |++..|.-....++|++++++++++.+++....... ++...++...+|.|++++++
T Consensus 158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~ 235 (304)
T PRK03449 158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL 235 (304)
T ss_pred hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence 332 444444311235688999999999998876542211 11111222234667788899
Q ss_pred HHHHhhcccchhhhHHhhhhhHHHHHHHHHhc
Q 008435 290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321 (565)
Q Consensus 290 p~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~ 321 (565)
++++++.++|+|+.+||++||+|+++|+++++
T Consensus 236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~ 267 (304)
T PRK03449 236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999985
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-35 Score=304.60 Aligned_cols=213 Identities=20% Similarity=0.324 Sum_probs=179.2
Q ss_pred cCCCCcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-Cccc--HH
Q 008435 96 AGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGKR--FV 172 (565)
Q Consensus 96 g~~~~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~-~~k~--~~ 172 (565)
....+|++...+..+++++|.+.|++||++|+++|++||++++|++.++.++++||+.++|+++++++|++ +++. ++
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~ 163 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQ 163 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHH
Confidence 34667888777889999999999999999999999999999999999999999999999999999999998 5533 57
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCcc-ccccCCCCCCcchhhHHHHHHHH
Q 008435 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIFPVLMAG 251 (565)
Q Consensus 173 e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~l-Wf~dLt~~Dp~~~~~iLPil~~~ 251 (565)
|+|++|+|++ ++|+. .++|+++|+|||+++|.++++.. .+...+|+ |++||+.+||.+ .+++|+++++
T Consensus 164 e~~~Lyk~~~----vnPl~-gclP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp~~-~~~~pii~gv 232 (314)
T COG0706 164 EMMKLYKKHK----VNPLA-GCLPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDPDY-ILLLPILAGV 232 (314)
T ss_pred HHHHHHHHhC----CCchh-hHHHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCCch-hhHHHHHHHH
Confidence 9999999984 44442 44999999999999999999986 34455555 999999999921 2355999999
Q ss_pred HHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHh
Q 008435 252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327 (565)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk 327 (565)
+++.+.+++....+ + .+. +.+++++.+|++.+.+++..+|+||.+||++||+|+++|+++++++..++
T Consensus 233 ~~f~q~~ls~~~~~----~-~q~---~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~ 300 (314)
T COG0706 233 TMFLQQKLSPRNLS----T-PQD---PQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHHhccccCC----c-ccC---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 99999999876433 1 111 23566777788888788899999999999999999999999999998877
No 11
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.1e-35 Score=304.65 Aligned_cols=217 Identities=22% Similarity=0.353 Sum_probs=166.1
Q ss_pred CCCcchHHHHH-HHHHHHhh--------hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 008435 98 EESSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG 168 (565)
Q Consensus 98 ~~~~~P~~~i~-~~L~~lh~--------~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~ 168 (565)
+...+|+.++. .++.++|. .+|+|||++|+++|+++|++++|++++|+|+++||++++||++++++||+++
T Consensus 9 ~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~ 88 (329)
T PRK01315 9 SAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGD 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhH
Confidence 44678887754 55555563 4789999999999999999999999999999999999999999999988766
Q ss_pred cc--HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCC----------CCCCcccCccccccCCCC
Q 008435 169 KR--FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY 236 (565)
Q Consensus 169 k~--~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~----------~~~l~~~g~lWf~dLt~~ 236 (565)
++ ++|++++|||+ ||+|+ ..++|+++|+|||+++|++||+++... .+++..+.++|+ +|...
T Consensus 89 ~~~~~~e~~~Lykk~----ginp~-~gclp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~ 162 (329)
T PRK01315 89 RERMSQEMMKLYKET----GTNPL-SSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAAT 162 (329)
T ss_pred HHHHHHHHHHHHHHc----CCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccc
Confidence 43 67899999997 78887 467999999999999999999876421 224445566665 34322
Q ss_pred -----CCc-----chhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHh
Q 008435 237 -----PHG-----VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYW 306 (565)
Q Consensus 237 -----Dp~-----~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW 306 (565)
+++ ..+.|||+++++++|++..........+ ++ ..+++.+.+|.|++++++++++++.++|+||.+||
T Consensus 163 f~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~-~~-~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW 240 (329)
T PRK01315 163 FLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPP-EA-KTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYW 240 (329)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 2246889999999998875433221111 11 11233455677888999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcC
Q 008435 307 VTNSSFSIVQQLALKH 322 (565)
Q Consensus 307 ~~s~~~sl~Q~~~l~~ 322 (565)
++||+|+++|++++.+
T Consensus 241 ~~snl~si~Qq~~v~r 256 (329)
T PRK01315 241 LTSNVWTMGQQFYVIR 256 (329)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998643
No 12
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.1e-35 Score=302.65 Aligned_cols=218 Identities=11% Similarity=0.154 Sum_probs=167.9
Q ss_pred CCcchHHHHHHHH---HHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cc----
Q 008435 99 ESSLPVRALISFL---DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG-KR---- 170 (565)
Q Consensus 99 ~~~~P~~~i~~~L---~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~-k~---- 170 (565)
...+|++++...+ +.+|...|+|||++|+++|+++|++++|++++|+++++||+++|||++++++|++++ ++
T Consensus 107 ~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~ 186 (357)
T PRK02201 107 LFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMK 186 (357)
T ss_pred HHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHH
Confidence 4566766655443 345577899999999999999999999999999999999999999999999988755 22
Q ss_pred ---HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCC------cch
Q 008435 171 ---FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVL 241 (565)
Q Consensus 171 ---~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp------~~~ 241 (565)
++|++++|+|+ ||+|+. .++|+++|+|||+++|+++|.+. ++....|+|+ ||+.+|+ ++.
T Consensus 187 ~k~q~e~~~Lykk~----ginP~~-gclP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~ 255 (357)
T PRK02201 187 QRKQQEIQELYKKH----NISPFS-PFVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWI 255 (357)
T ss_pred HHHHHHHHHHHHHc----CCCcHH-HHHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccch
Confidence 57889999997 788774 67999999999999999999885 5677889999 9999874 123
Q ss_pred hhHHHHHHHHHHHHHHHHhcc----cCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHH
Q 008435 242 GSIFPVLMAGLHYTNVQLSFG----ASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQ 317 (565)
Q Consensus 242 ~~iLPil~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~ 317 (565)
+.++++++++++++++.+... .......+..+.+..+.++.|+.+|++.+++++..+|+|+.+||++||+|+++|+
T Consensus 256 ~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq 335 (357)
T PRK02201 256 YLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQT 335 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777765432 1110000111112234456778888888888999999999999999999999999
Q ss_pred HHhcCHHHHh
Q 008435 318 LALKHPASRT 327 (565)
Q Consensus 318 ~~l~~~~~rk 327 (565)
+++++-.-|+
T Consensus 336 ~~i~~~~k~~ 345 (357)
T PRK02201 336 LGIHYFKKRK 345 (357)
T ss_pred HHHHHHHHHH
Confidence 9998653333
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=2.7e-33 Score=294.11 Aligned_cols=226 Identities=19% Similarity=0.262 Sum_probs=160.4
Q ss_pred CCCcchHHHHHHHHHH-Hhhh----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccc--
Q 008435 98 EESSLPVRALISFLDT-YHDF----TGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR-- 170 (565)
Q Consensus 98 ~~~~~P~~~i~~~L~~-lh~~----tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k~-- 170 (565)
+.+.+|+++|.+++.. ++.. .|+|||++|+++||+||++++|++++|.++++||+.++|++++|+++|+++++
T Consensus 3 ~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e 82 (429)
T PRK00247 3 DIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEA 82 (429)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHH
Confidence 3467888877665553 4433 36899999999999999999999999999999999999999999998876543
Q ss_pred -----HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc---------------------
Q 008435 171 -----FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC--------------------- 224 (565)
Q Consensus 171 -----~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~--------------------- 224 (565)
++|++++||++ ||+|+ ..++|+|||+|||+++|++||+|+. +.+|+.+
T Consensus 83 ~~~~~qqe~~~LyKe~----ginP~-~gcLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~ 156 (429)
T PRK00247 83 SIRELQQKQKDLNKEY----GYNPL-AGCVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGR 156 (429)
T ss_pred HHHHHHHHHHHHHHHc----CCCch-HHHHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhcc
Confidence 45778888887 78777 4679999999999999999999984 4444432
Q ss_pred --------------cCccccccCCCCCCcchhhHHHHHH--HHHHHHHHHHhcccCcC--CcccchhhHHHHHHHHHHHH
Q 008435 225 --------------GGIWWFQNLTEYPHGVLGSIFPVLM--AGLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNL 286 (565)
Q Consensus 225 --------------~g~lWf~dLt~~Dp~~~~~iLPil~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~k~~l~~ 286 (565)
++++|+ +.+.+|. .+++||+++ +++++++..++...... ...++....+.|.|..|+++
T Consensus 157 ~fGvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~ 233 (429)
T PRK00247 157 VFNVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAIL 233 (429)
T ss_pred ccCCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 222333 2333332 247888554 44455666666543211 11112122234555555566
Q ss_pred HHHHHHHhhcc--cchhhhHHhhhhhHHHHHHHHHhcCHHHHhHhCCCC
Q 008435 287 MTLPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD 333 (565)
Q Consensus 287 ~~lp~~~~~~~--~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l~ip~ 333 (565)
+++++++++++ +|+||+|||++||+|+++|++++. ..++++..+++
T Consensus 234 ~Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~-~~l~~~~P~~~ 281 (429)
T PRK00247 234 APIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY-LILERKYPLTD 281 (429)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCCCc
Confidence 77666665544 899999999999999999999885 45677666644
No 14
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-29 Score=262.64 Aligned_cols=219 Identities=27% Similarity=0.436 Sum_probs=182.6
Q ss_pred CCCcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc----c---
Q 008435 98 EESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK----R--- 170 (565)
Q Consensus 98 ~~~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~k----~--- 170 (565)
..+|.|+..+++.|+.+|+++|+|||++|+..|+.+|..++|+.+.++|+.+|++++.|+++.+.++....+ .
T Consensus 78 ~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~ 157 (372)
T KOG1239|consen 78 LSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLS 157 (372)
T ss_pred hcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHH
Confidence 678999999999999999999999999999999999999999999999999999999999998877543221 1
Q ss_pred -HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHH
Q 008435 171 -FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLM 249 (565)
Q Consensus 171 -~~e~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~ 249 (565)
++++.++++++ |++| ++..+| ++|.|+|+++|++||.|+ .+++++.++|++||+||+.+|| ++++|+++
T Consensus 158 ~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~it 227 (372)
T KOG1239|consen 158 WQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPGIT 227 (372)
T ss_pred HHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHHHH
Confidence 34566777776 7776 655555 999999999999999999 8999999999999999999999 89999999
Q ss_pred HHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHh
Q 008435 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329 (565)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l 329 (565)
++++..+++++...... .. .+...|+.+..++++-.+.++.++|.++++||+ |+++|..++|. .+|+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr~~l 296 (372)
T KOG1239|consen 228 LATLTLFIELGAETGLS---SS---KLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVRKKL 296 (372)
T ss_pred HHHHHHHHHHHHHhhhh---cc---cccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHHHhc
Confidence 99999999887543111 00 111234444444444444456799999999999 99999999999 999999
Q ss_pred CCCCCCCC
Q 008435 330 GLPDKVVP 337 (565)
Q Consensus 330 ~ip~~~~~ 337 (565)
|+|+.+++
T Consensus 297 ~~~~~~~~ 304 (372)
T KOG1239|consen 297 GIPDVPSI 304 (372)
T ss_pred CCCCCCCC
Confidence 99999886
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.94 E-value=1.6e-26 Score=231.27 Aligned_cols=209 Identities=18% Similarity=0.217 Sum_probs=151.7
Q ss_pred CcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCCCCCCcc--cHHH
Q 008435 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSGK--RFVD 173 (565)
Q Consensus 100 ~~~P~~~i~~~L~~lh~~tGlpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~----~i~~~~~~~k--~~~e 173 (565)
+|+-...+..+|+++|..+| +||++|+++|+++|++++|++++|+|+++||+.+||+|+ +|++||++++ .++|
T Consensus 6 g~i~~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk~QqE 84 (375)
T PRK02654 6 GFISNNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQKQQEE 84 (375)
T ss_pred HHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHHHHHH
Confidence 44444567789999999998 999999999999999999999999999999999999996 5888887664 3689
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhccC------------------------------------
Q 008435 174 QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLD------------------------------------ 217 (565)
Q Consensus 174 ~~~l~~k~~~~~g~~~~~~~~lp~liQiPifi~~~~~lr~m~~~------------------------------------ 217 (565)
++++|||++ +|+ ..++|+++|+|||+++|.+||.....
T Consensus 85 mmkLYKE~G-----NPl-aGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~~~ 158 (375)
T PRK02654 85 MGKLMKEFG-----NPL-AGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFITDG 158 (375)
T ss_pred HHHHHHHcC-----CCh-hhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEecC
Confidence 999999984 343 34599999999999999999984310
Q ss_pred ------------------------------------------------------------------------------CC
Q 008435 218 ------------------------------------------------------------------------------GH 219 (565)
Q Consensus 218 ------------------------------------------------------------------------------~~ 219 (565)
.+
T Consensus 159 ~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~~i 238 (375)
T PRK02654 159 VHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQGTI 238 (375)
T ss_pred ccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEEee
Confidence 02
Q ss_pred CCC-cccCccccccCCCC----CCc---chhhHHHHHHHHHHHHHHHHhcccCcCCcccchhhHHHHHHHHHHHHHHHHH
Q 008435 220 PGF-DCGGIWWFQNLTEY----PHG---VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPL 291 (565)
Q Consensus 220 ~~l-~~~g~lWf~dLt~~----Dp~---~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~lp~ 291 (565)
||+ ...|||++.-|... |.| |=..++-+..+++.|+|+.++...++. +.++ +.+.++..++.-.+
T Consensus 239 pg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~---~~qq----~t~nkitpv~~sgm 311 (375)
T PRK02654 239 PGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPA---NPQQ----STANKITPVMFSGM 311 (375)
T ss_pred cceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCC---ChhH----HHHHhhhhHHHhhh
Confidence 333 24556666555432 122 112356667788889999888653322 1121 22333333322122
Q ss_pred HHhhcccchhhhHHhhhhhHHHHHHHHHhcCH
Q 008435 292 FFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (565)
Q Consensus 292 ~~~~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~ 323 (565)
|+.+-+|+|+.+||+.+|+|+.+|++++.+.
T Consensus 312 -flffplpagvllym~ianifq~~qt~~l~re 342 (375)
T PRK02654 312 -FLFFPLPAGVLLYMVIANIFQTLQTFLLSRE 342 (375)
T ss_pred -HhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3346899999999999999999999999753
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=7.3e-16 Score=163.95 Aligned_cols=142 Identities=18% Similarity=0.103 Sum_probs=72.4
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
|.|.+...+..++.+..+|..+.++|+.|-||+.|++||+++|++++|+.+||..+...|+.+||+++|.+|+.+
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l----- 349 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL----- 349 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-----
Confidence 344444455555555555555555555555555555555555555555555555555555555555555555332
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHH
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLI 508 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~A 508 (565)
.|+.+ .+.++||+++.++|..++|...|++ +...+|+.+... .+||..+ +.+|+.+
T Consensus 350 ~p~ha-------dam~NLgni~~E~~~~e~A~~ly~~-al~v~p~~aaa~-------nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 350 CPNHA-------DAMNNLGNIYREQGKIEEATRLYLK-ALEVFPEFAAAH-------NNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred CCccH-------HHHHHHHHHHHHhccchHHHHHHHH-HHhhChhhhhhh-------hhHHHHHHhcccHHHHHHHHHHH
Confidence 23322 2344455555555555555555555 333444443221 1344333 4555555
Q ss_pred HhcCCCcHHHH
Q 008435 509 FATSPSIINLL 519 (565)
Q Consensus 509 l~l~P~~~~~l 519 (565)
++++|.+++++
T Consensus 415 lrI~P~fAda~ 425 (966)
T KOG4626|consen 415 LRIKPTFADAL 425 (966)
T ss_pred HhcCchHHHHH
Confidence 55555555444
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=155.22 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=146.7
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435 356 PAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (565)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l 435 (565)
..|.|.++..|-.+++++.+|.++-..|+.+||+++|.+||.+.|+++++.++||.+|.+.|++++|...|++|++.
T Consensus 307 ~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--- 383 (966)
T KOG4626|consen 307 DTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--- 383 (966)
T ss_pred HHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITF 506 (565)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~ 506 (565)
.|+ +..++.+||.+|.++|++++|+.+|+. +.+..|..++. +.++|..+ +++|.
T Consensus 384 --~p~-------~aaa~nNLa~i~kqqgnl~~Ai~~Yke-alrI~P~fAda-------~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 384 --FPE-------FAAAHNNLASIYKQQGNLDDAIMCYKE-ALRIKPTFADA-------LSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred --Chh-------hhhhhhhHHHHHHhcccHHHHHHHHHH-HHhcCchHHHH-------HHhcchHHHHhhhHHHHHHHHH
Confidence 232 335788899999999999999999999 77888887654 34555555 89999
Q ss_pred HHHhcCCCcHHHHHhhhhh-------hHHHhhhhhhh--hhhhhhhhccchhHH
Q 008435 507 LIFATSPSIINLLTVSNII-------DIIYVNCYELK--KKRFASCFFGFSVLY 551 (565)
Q Consensus 507 ~Al~l~P~~~~~l~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~ 551 (565)
+|+.+||.++++..+...+ .++.+.|.++. |+-|++||-||-...
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 9999999999877555332 23444444432 355999999986654
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.6e-14 Score=152.39 Aligned_cols=185 Identities=19% Similarity=0.141 Sum_probs=149.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
..-+..++.+|+.+|..|..+.-+++++.|+++|++|+++||+++.||..+|--+....++|.|..+|++|+.. +
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-----~ 485 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-----D 485 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-----C
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999654 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
|++ ..|||++|.+|.++|+++.|.-+|++ |...||.+-....++...+..++... ++.+++|+.+||...
T Consensus 486 ~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqk-A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 486 PRH-------YNAWYGLGTVYLKQEKLEFAEFHFQK-AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred chh-------hHHHHhhhhheeccchhhHHHHHHHh-hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 433 36899999999999999999999999 77799998866554433333333333 899999999999743
Q ss_pred -------HHHHhhhhhhHHHhhhhh---hhhhhhhhhhccchhHHHHHHHH
Q 008435 517 -------NLLTVSNIIDIIYVNCYE---LKKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 517 -------~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
..+...+++++++....+ ..++ =+.+|+.+|.+|..++..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccc
Confidence 344555566555544433 3334 578899999999998753
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.5e-12 Score=134.29 Aligned_cols=173 Identities=17% Similarity=0.116 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+..++.+|..+...|++++|+..|+++++++|+++.+|+.+|.++...|++++|++.|++++++ +|++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~------ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN------ 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH------
Confidence 5569999999999999999999999999999999999999999999999999999999999764 56543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhc-CCCcHH----
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFAT-SPSIIN---- 517 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l-~P~~~~---- 517 (565)
.++.++|.++...|++++|++.+++ +...+|+++....+. .+.... .+.+++++.. +|+...
T Consensus 133 -~a~~~lg~~l~~~g~~~eA~~~~~~-al~~~P~~~~~~~~~-----~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 205 (296)
T PRK11189 133 -YAYLNRGIALYYGGRYELAQDDLLA-FYQDDPNDPYRALWL-----YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIV 205 (296)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHH-----HHHHccCCHHHHHHHHHHHHhhCCccccHHHHH
Confidence 4688899999999999999999999 667899987321111 111111 5666555544 443211
Q ss_pred --HHHhhhhhhHHHhhhhh------hhhhhhhhhhccchhHHHHHHHHHhh
Q 008435 518 --LLTVSNIIDIIYVNCYE------LKKKRFASCFFGFSVLYVMLVAMLKL 560 (565)
Q Consensus 518 --~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (565)
.+.+.... +.++...+ ....|+.++|+++|.+|.++|+..+-
T Consensus 206 ~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 206 EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 11111111 12221111 22356899999999999998876553
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=1.8e-12 Score=119.45 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+|+.++..|..+.+.|++++|+..|++++..+|++.++|+.+|.++...|++++|+++|++|++ .+|+++
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-----l~p~~~----- 92 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM-----LDASHP----- 92 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCc-----
Confidence 3555778899999999999999999999999999999999999999999999999999999965 457655
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~ 487 (565)
.+++++|.++...|++++|++.|++ +...+|+++...
T Consensus 93 --~a~~~lg~~l~~~g~~~eAi~~~~~-Al~~~p~~~~~~ 129 (144)
T PRK15359 93 --EPVYQTGVCLKMMGEPGLAREAFQT-AIKMSYADASWS 129 (144)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHH
Confidence 4688899999999999999999999 777999998653
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=5.3e-12 Score=121.60 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+...+++|..+++.|++..|...+++||+.||++..+|..++.+|...|+.+.|.+.|++|++ .+|++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-----l~p~~G------ 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-----LAPNNG------ 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-----cCCCcc------
Confidence 567889999999999999999999999999999999999999999999999999999999965 457654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l 519 (565)
.++.+.|.-+|.+|++++|...|++ +. .+|..+... +.+.++|-+- .++|+++++.+|++....
T Consensus 104 -dVLNNYG~FLC~qg~~~eA~q~F~~-Al-~~P~Y~~~s----~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 104 -DVLNNYGAFLCAQGRPEEAMQQFER-AL-ADPAYGEPS----DTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred -chhhhhhHHHHhCCChHHHHHHHHH-HH-hCCCCCCcc----hhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence 3567799999999999999999999 44 466666432 2333444433 799999999999988766
Q ss_pred Hhhhh
Q 008435 520 TVSNI 524 (565)
Q Consensus 520 ~~~~~ 524 (565)
.+..+
T Consensus 177 l~~a~ 181 (250)
T COG3063 177 LELAR 181 (250)
T ss_pred HHHHH
Confidence 55433
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=6e-12 Score=142.55 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.++..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+.+|++++++ +|++.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~--- 433 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFI--- 433 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCH---
Confidence 4456678888888888888888888888888888888888888888888888888888888888653 45433
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH----
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL---- 519 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l---- 519 (565)
.++..+|.++..+|++++|+..|++ +...+|+++.....+...+...+... ++.|+++++++|+.....
T Consensus 434 ----~~~~~la~~~~~~g~~~eA~~~~~~-al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 434 ----FSHIQLGVTQYKEGSIASSMATFRR-CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 3566788888888888888888888 55677877765443333333333222 778888888887642211
Q ss_pred ----------HhhhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435 520 ----------TVSNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 520 ----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
...++.+++.+.+.++ ...+...++.++|.+|...|+.
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 1112222232222221 1245666788888888876653
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=6.8e-12 Score=140.31 Aligned_cols=186 Identities=13% Similarity=0.041 Sum_probs=136.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008435 362 ISVENLTPKELIALSVKFLSK---GDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECA 429 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~---g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~---------g~~~eA~~~~~rA 429 (565)
..+.+.++.+++..|..+... +++++|+.+|++|+++||+++.+|..+|.+|... +++++|++++++|
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 345677888899999876544 4567999999999999999999999999987744 3489999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHH
Q 008435 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFL 507 (565)
Q Consensus 430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~ 507 (565)
+++ +|+++ .++..+|.++...|++++|+++|++ +..++|+++.....+...+...|... ++++++
T Consensus 331 l~l-----dP~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 331 TEL-----DHNNP-------QALGLLGLINTIHSEYIVGSLLFKQ-ANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred Hhc-----CCCCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 654 57655 4677799999999999999999999 77799999865433222222222222 899999
Q ss_pred HHhcCCCcHHHH-------HhhhhhhHHHhhhhhhh---hhhhhhhhccchhHHHHHHHHHhh
Q 008435 508 IFATSPSIINLL-------TVSNIIDIIYVNCYELK---KKRFASCFFGFSVLYVMLVAMLKL 560 (565)
Q Consensus 508 Al~l~P~~~~~l-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 560 (565)
+++++|...... -..++.+++.+.+.++. ...++.++.++|.+|..+|+..+-
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 999999864321 11233334444443333 345788899999999888875443
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=2.3e-10 Score=128.08 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=110.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+..++.+++.+..+|..+...|++++|+..|++|++++|+++.+|+.+|.++...|++++|+++|++++++ +
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~ 402 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----D 402 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence 44566667789999999999999999999999999999999999999999999999999999999999999654 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
|.++ .++..++.++...|++++|++.++++....+|+++.........+..+|..- .+.+++....+|+..
T Consensus 403 P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 403 PTRA-------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred CCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 6644 1233455567789999999999999444334677653221211111222211 667788777777743
No 25
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=2.2e-10 Score=105.68 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+-+.+|..|..+++.|++++|++.|+-+...||.+++.|++||.++..+|++++|+++|.+|+. ++|+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~~ddp----- 103 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IKIDAP----- 103 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCc-----
Confidence 4678899999999999999999999999999999999999999999999999999999999965 457766
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
.+++++|.|+...|+.++|++.|+. +....
T Consensus 104 --~~~~~ag~c~L~lG~~~~A~~aF~~-Ai~~~ 133 (157)
T PRK15363 104 --QAPWAAAECYLACDNVCYAIKALKA-VVRIC 133 (157)
T ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHH-HHHHh
Confidence 4688899999999999999999999 44343
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=9.7e-10 Score=105.92 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~----- 99 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG----- 99 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-----
Confidence 36778899999999999999999999999999999999999999999999999999999999754 34432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL 518 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~ 518 (565)
.++..+|.++...|++++|++.++++.. .. ..+... ..+..+|..+ .++++++++.+|+....
T Consensus 100 --~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 100 --DVLNNYGTFLCQQGKYEQAMQQFEQAIE-DP-LYPQPA----RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHh-cc-ccccch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 3567789999999999999999999433 22 111110 1122333333 78899999999986553
Q ss_pred HHhh-------hhhhH---HHhhhhhhhhhhhhhhhccchhHHHHHHHHHhhh
Q 008435 519 LTVS-------NIIDI---IYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLR 561 (565)
Q Consensus 519 l~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (565)
+... ++.++ .++.+.+. ..-..+.+..++.++...++..+.+
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 3222 22222 22222222 1223455666677777766655543
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.19 E-value=2.9e-10 Score=104.72 Aligned_cols=124 Identities=12% Similarity=0.060 Sum_probs=97.7
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCH
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~ 465 (565)
.--..++++++++||++ ++.+|.++.+.|++++|+++|++++.. +|.+. .++..+|.++...|++
T Consensus 10 ~~~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 10 KIPEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSW-------RAHIALAGTWMMLKEY 74 (144)
T ss_pred CCHHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHHhhH
Confidence 34678999999999997 667899999999999999999999653 56544 5688899999999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 466 ~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
++|+..|++ +..++|+++........++..+|..- ++.++++++.+|++.+++...+..
T Consensus 75 ~~A~~~y~~-Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 75 TTAINFYGH-ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999 66799999876442222222222222 889999999999998887555444
No 28
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.19 E-value=3.4e-10 Score=110.00 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=97.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhhhh
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ-LQKGL--LEEAVEYLECAISKLFL 435 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~-~~~g~--~~eA~~~~~rAl~l~~l 435 (565)
.+.+..++.+++.++.+|..+...|++++|+..|++|++++|++++++..+|.++ ...|+ .++|.+.+++++++
T Consensus 63 ~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--- 139 (198)
T PRK10370 63 QDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--- 139 (198)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---
Confidence 5667777888999999999999999999999999999999999999999999975 67787 59999999999654
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+|++. .+++.+|.++.+.|++++|+.+++++.....|++.
T Consensus 140 --dP~~~-------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 140 --DANEV-------TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred --CCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 56654 46788999999999999999999995554444443
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=9.5e-11 Score=127.05 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=119.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.|.+..++..++.+..+|..+....++|+|.++|++||..||.+.+|||.+|.+|.++++++.|+-+|++|++ .|
T Consensus 445 ~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-----IN 519 (638)
T KOG1126|consen 445 KRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-----IN 519 (638)
T ss_pred HHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc-----CC
Confidence 4567777778999999999999999999999999999999999999999999999999999999999999965 46
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
|.+. .....+|.++.+.|+.|+|+..|++ |..++|.|+....+-...+..++... .+.+++.-++-|+..
T Consensus 520 P~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~-A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 520 PSNS-------VILCHIGRIQHQLKRKDKALQLYEK-AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred ccch-------hHHhhhhHHHHHhhhhhHHHHHHHH-HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 7654 2356689999999999999999999 66699999976554433333333322 556666666667654
Q ss_pred HHH
Q 008435 517 NLL 519 (565)
Q Consensus 517 ~~l 519 (565)
-..
T Consensus 592 ~v~ 594 (638)
T KOG1126|consen 592 SVF 594 (638)
T ss_pred HHH
Confidence 433
No 30
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=3.5e-10 Score=102.00 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=100.4
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+.+.+..+.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++. +
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~ 81 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----D 81 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C
Confidence 44555666678889999999999999999999999999999999999999999999999999999999999653 4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
|+++ ..++.+|.++...|++++|++.|++ +..++|++...
T Consensus 82 p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDP-------RPYFHAAECLLALGEPESALKALDL-AIEICGENPEY 121 (135)
T ss_pred CCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhccccchH
Confidence 5433 3577899999999999999999999 67788888753
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.17 E-value=4.5e-10 Score=127.34 Aligned_cols=141 Identities=11% Similarity=0.008 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+..+..+..+|..+...|++++|+..++++++++|++..+|+.+|.++...|++++|+++|+++++. +|+++
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~--- 399 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP--- 399 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---
Confidence 3456778899999999999999999999999999999999999999999999999999999999654 46544
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL 519 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l 519 (565)
.+++.+|.++...|++++|+..|++ +..++|++..........+..++... +..++++++.+|+...++
T Consensus 400 ----~~~~~lg~~~~~~g~~~~A~~~~~k-al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~ 470 (615)
T TIGR00990 400 ----DIYYHRAQLHFIKGEFAQAGKDYQK-SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470 (615)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 4678899999999999999999999 67788887754221111111112111 789999999999876544
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=8.8e-10 Score=109.17 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=121.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
....++.++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|++.|+++++. +|++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~ 103 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNH 103 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCC
Confidence 345688999999999999999999999999999999986 68999999999999999999999999765 4654
Q ss_pred hhhhhHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 008435 442 PEAIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSP 513 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~--------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P 513 (565)
+.. ..+++.+|.++... |++++|++.|++ +...+|++..... ++..++... ..+.+ ..-
T Consensus 104 ~~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~----a~~~~~~~~-~~~~~---~~~ 170 (235)
T TIGR03302 104 PDA----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE-LIRRYPNSEYAPD----AKKRMDYLR-NRLAG---KEL 170 (235)
T ss_pred Cch----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH-HHHHCCCChhHHH----HHHHHHHHH-HHHHH---HHH
Confidence 421 23677899999876 899999999999 6667888764322 111111111 00000 000
Q ss_pred CcHHHHHhhhhhhHHHhhhhhhhh-----hhhhhhhccchhHHHHHHHHHh
Q 008435 514 SIINLLTVSNIIDIIYVNCYELKK-----KRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 514 ~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
....++...++..+..+.+..+.+ +.++++++++|.+|.++++--+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 112223333333333333333221 3467899999999998887443
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.13 E-value=9.8e-10 Score=129.26 Aligned_cols=141 Identities=17% Similarity=0.110 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+......++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+++|++++++ +|+++
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~----- 643 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS----- 643 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 3444445555556679999999999999999996 899999999999999999999999999654 56654
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~ 522 (565)
.++.++|.++...|++++|++.|++ +..++|+++........++..+|..- +++++++++++|+........
T Consensus 644 --~a~~nLG~aL~~~G~~eeAi~~l~~-AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 644 --NYQAALGYALWDSGDIAQSREMLER-AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT 717 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence 4677899999999999999999999 66789998865332222222222211 789999999999876655443
No 34
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.13 E-value=1.3e-09 Score=123.76 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++.++.+|....+.|++++|+.+++++++.+|++..|+..++.++.+.++++||+..++++++ .+|+++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-----~~p~~~----- 154 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-----GGSSSA----- 154 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-----cCCCCH-----
Confidence 5889999999999999999999999999999999999999999999999999999999999954 467655
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~ 514 (565)
.+++.+|.++.++|+++||++.|++ +...+|+++.....+...+...|..- ...|+++++..-+
T Consensus 155 --~~~~~~a~~l~~~g~~~~A~~~y~~-~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 155 --REILLEAKSWDEIGQSEQADACFER-LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 4677899999999999999999999 44478887765443322222223222 7888999887643
No 35
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=8.3e-10 Score=118.21 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=129.9
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a 451 (565)
-+..|..++++|+..+|.-+|+.|+..||++++||-.||.++...++-..|+.+++|+++ ++|++- .+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~-----LdP~Nl-------ea 355 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE-----LDPTNL-------EA 355 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-----cCCccH-------HH
Confidence 468999999999999999999999999999999999999999999999999999999965 467755 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----------C---------ch----hhhhh------------hhHHH
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPE-----------E---------PK----SKAHY------------YDGLV 495 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~-----------~---------~~----~~~~~------------~~~~~ 495 (565)
...|+++|...|.-.+|.+.|++ -.+..|. . .. ....| .+...
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~-Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDK-WIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH-HHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 67789999999988889888888 3222211 1 00 00011 11222
Q ss_pred HHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435 496 VLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 496 ~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
.||-.+ ++||+.||..+|+....|.+. ++..+++..|-++ .++-|.++.||+|+.|.-+|+-
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 333333 899999999999988877554 3333555544332 2355999999999999888764
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.12 E-value=7.3e-10 Score=126.39 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=110.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCc----hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 363 SVENLTPKELIALSVKFLSKGDKER----PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~e----Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
...+.++..++.+|..+...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+.++++++++ +
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~ 314 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----H 314 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 3345568888999999999999996 899999999999999999999999999999999999999999654 4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
|+++ .++.++|.++...|++++|++.|++ +...+|+++.........+...|..- ++.|+++++.+|+..
T Consensus 315 P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~-al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 315 PDLP-------YVRAMYARALRQVGQYTAASDEFVQ-LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 6544 3567799999999999999999999 66678877642211111111222212 789999999999853
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.11 E-value=6.8e-10 Score=117.50 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
.++...|..++..|++++|+.+|++|++++|+++.+|+.+|.++...|++++|+..+++|+++ +|.++
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~------- 70 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLA------- 70 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCH-------
Confidence 357889999999999999999999999999999999999999999999999999999999764 46543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
.+++.+|.++..+|++++|+.+|++ +..++|+++....
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~-al~l~P~~~~~~~ 108 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEK-GASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCCCCHHHHH
Confidence 4688899999999999999999999 6779999986533
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=3e-09 Score=102.51 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.|+++++.. ..+.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~------- 133 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQ------- 133 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---cccc-------
Confidence 467788899999999999999999999999999999999999999999999999999999997531 0111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL 519 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l 519 (565)
....+..+|.++...|++++|++.+++ +...+|+++.....+...+...+... .++++++++..|.....+
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTR-ALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 123467799999999999999999999 66678877644322111111111111 678888888877655443
No 39
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=8.4e-10 Score=110.38 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++.+-.+|..+.+.++|++|+..|.+||++||+|+--|-+.+.+|.++|++++|++-.+.||++ || ..
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp-------~y 148 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DP-------HY 148 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----Ch-------HH
Confidence 5777889999999999999999999999999999999999999999999999999999999764 23 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
..+|..+|.+|..+|++++|++.|++ ++.++|++...+.
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykK-aLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKK-ALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHh-hhccCCCcHHHHH
Confidence 46889999999999999999999999 7779999985444
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=3.3e-09 Score=102.51 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
..++-+...+..+|..+...|+.+.|.+.|++|++++|++.+++++.|..+..+|++++|..+|++|++ +|..+
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~ 136 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYG 136 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCC
Confidence 334446778889999999999999999999999999999999999999999999999999999999964 46544
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
+.. .++.++|.|..+.|+.+.|.++|+| +...+|+++..
T Consensus 137 ~~s----~t~eN~G~Cal~~gq~~~A~~~l~r-aL~~dp~~~~~ 175 (250)
T COG3063 137 EPS----DTLENLGLCALKAGQFDQAEEYLKR-ALELDPQFPPA 175 (250)
T ss_pred Ccc----hhhhhhHHHHhhcCCchhHHHHHHH-HHHhCcCCChH
Confidence 322 3567899999999999999999999 77799998864
No 41
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.08 E-value=1.8e-09 Score=123.10 Aligned_cols=108 Identities=9% Similarity=0.015 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..+.+++.++.+|......|++++|+..++++++.+|++++++..+|.++.+.|++++|++.|++++++ +|+++
T Consensus 71 ~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-----~P~~~- 144 (656)
T PRK15174 71 TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-----FSGNS- 144 (656)
T ss_pred hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-
Confidence 334456667777777777777777777777777777777777777777777777777777777777543 34432
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.++..+|.++...|++++|++.+++ +...+|+++
T Consensus 145 ------~a~~~la~~l~~~g~~~eA~~~~~~-~~~~~P~~~ 178 (656)
T PRK15174 145 ------QIFALHLRTLVLMDKELQAISLART-QAQEVPPRG 178 (656)
T ss_pred ------HHHHHHHHHHHHCCChHHHHHHHHH-HHHhCCCCH
Confidence 2344556666666666666666665 333455544
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1e-09 Score=114.62 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=59.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
+|.+...+.....+...|..+.+.++...|+..|++|++++|.|-+||+.||+.|.-.+.+.=|+-+|+||+++ .
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----k 428 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----K 428 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----C
Confidence 34444444444455555555666666666666666666666666666666666666666666666666666432 2
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
|.|. ..|..+|.||.++++.+||++.|++
T Consensus 429 PnDs-------Rlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 429 PNDS-------RLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred CCch-------HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4433 2344566666666666666666666
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=1.6e-09 Score=105.19 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=95.2
Q ss_pred CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH-H
Q 008435 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC-I 460 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~-~ 460 (565)
.++.++++..++++++.+|+|+++|+.+|.+|...|++++|+++|++|+++ +|+++ .++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~-------~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA-------ELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHH
Confidence 555678899999999999999999999999999999999999999999664 56654 3567788875 6
Q ss_pred HcCC--HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 461 RQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 461 ~~g~--~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
..|+ +++|++.+++ +...+|+++.............|..- +++++++++.+|...
T Consensus 120 ~~g~~~~~~A~~~l~~-al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 120 QAGQHMTPQTREMIDK-ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred hcCCCCcHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 7787 5999999999 77799999865432211111122222 899999999998643
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.05 E-value=2.1e-09 Score=130.18 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=95.8
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh---HHH-
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID---LLI- 449 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~---~~~- 449 (565)
.+|..+...|++++|+..|+++++.+|+++++++.+|.++.+.|++++|+++|+++++. +|++..... ...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHHh
Confidence 55888999999999999999999999999999999999999999999999999999754 454321100 000
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHH
Q 008435 450 ---VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIIN 517 (565)
Q Consensus 450 ---~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~ 517 (565)
......|.++...|++++|++.|++ +...+|+++.... .+|..+ +++|+++++.+|+...
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~-Al~~~P~~~~a~~-------~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQ-ARQVDNTDSYAVL-------GLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 0122346677777777777777777 5556776654322 333333 6777777777777554
Q ss_pred H
Q 008435 518 L 518 (565)
Q Consensus 518 ~ 518 (565)
+
T Consensus 421 a 421 (1157)
T PRK11447 421 A 421 (1157)
T ss_pred H
Confidence 3
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=7.4e-09 Score=106.87 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=87.4
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+.+++.++.+|..+...|++++|+..|+++++++|++..+|..+|.++...|++++|++.|++++++ +
T Consensus 88 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~ 162 (296)
T PRK11189 88 SQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----D 162 (296)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 34444556678999999999999999999999999999999999999999999999999999999999999654 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
|+++. ...|+ ..+...+++++|++.|++.+...+
T Consensus 163 P~~~~-------~~~~~-~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 163 PNDPY-------RALWL-YLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred CCCHH-------HHHHH-HHHHccCCHHHHHHHHHHHHhhCC
Confidence 65541 11122 234567889999999987454333
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.03 E-value=5.4e-09 Score=111.04 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+......|..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.++++++. |... .
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~--~ 103 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR------PDLT--R 103 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC------CCCC--H
Confidence 3345667788888999999999999999999999999999999999999999999999999988542 2111 1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.....++..+|.++...|++++|++.|++ +...+|.+.
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~-~l~~~~~~~ 141 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQ-LVDEGDFAE 141 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHcCCcchH
Confidence 11123466677777888888888888877 444455443
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.01 E-value=4.7e-09 Score=123.61 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=116.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+ +++.++.+|..+.+.|++++|+..|+++++++|+++.++..+|.++...|++++|+++|++|+++ +
T Consensus 600 ~~AL~l~P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~ 673 (987)
T PRK09782 600 TRSLNIAP-SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----L 673 (987)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 33444445 48889999999999999999999999999999999999999999999999999999999999664 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----HHHHHHHHhcCCC
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----ANITFLIFATSPS 514 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----~~~l~~Al~l~P~ 514 (565)
|+++ .+++++|.++...|++++|+++|++ +..++|+++.....+ +.+...... .+.++++..++|+
T Consensus 674 P~~~-------~a~~nLA~al~~lGd~~eA~~~l~~-Al~l~P~~a~i~~~~--g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 674 PDDP-------ALIRQLAYVNQRLDDMAATQHYARL-VIDDIDNQALITPLT--PEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCCchhhhhh--hHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 6654 4688899999999999999999999 777899988664322 222222222 6778888999997
Q ss_pred cH
Q 008435 515 II 516 (565)
Q Consensus 515 ~~ 516 (565)
..
T Consensus 744 ~~ 745 (987)
T PRK09782 744 SS 745 (987)
T ss_pred ch
Confidence 55
No 48
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.01 E-value=7.7e-09 Score=119.68 Aligned_cols=177 Identities=18% Similarity=0.200 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh-----
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----- 442 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~----- 442 (565)
++..++..|..+..+|++++|+..++++++.+|+++++++.+|.++...|++++|+..|+++++.. |.+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG-----YPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CChhhhHHH
Confidence 567789999999999999999999999999999999999999999999999999999999997542 2110
Q ss_pred -----------------------hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH
Q 008435 443 -----------------------EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR 499 (565)
Q Consensus 443 -----------------------~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~ 499 (565)
...+....++..+|.++...|++++|++.|++ +...+|+++.... .++.
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~-------~la~ 167 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ-ALAIDPRSLYAKL-------GLAQ 167 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCChhhHH-------HHHH
Confidence 01112234567799999999999999999999 6667887764322 3333
Q ss_pred HH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435 500 YV---------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 500 ~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
.+ .+.++++++.+|+...++... ++.+++.+.+..+ ...+..+++..++.++...++.
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~ 243 (899)
T TIGR02917 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF 243 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 32 788888889999876544222 2222222222221 1234566777777777766543
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=9.4e-10 Score=117.80 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
.+.-.|++..+.+|+.+...|++++|+++|+.||+.+|+|...|..||-.+..-.+.+||+.+|+||+++ .|...
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-----qP~yV 498 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-----QPGYV 498 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----CCCee
Confidence 3334689999999999999999999999999999999999999999999999999999999999999654 46533
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
+++|++|++|+.+|.|.||+++|-. ++.+.+.
T Consensus 499 -------R~RyNlgIS~mNlG~ykEA~~hlL~-AL~mq~k 530 (579)
T KOG1125|consen 499 -------RVRYNLGISCMNLGAYKEAVKHLLE-ALSMQRK 530 (579)
T ss_pred -------eeehhhhhhhhhhhhHHHHHHHHHH-HHHhhhc
Confidence 6889999999999999999999999 4444433
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.01 E-value=4.6e-09 Score=94.60 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=95.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHH
Q 008435 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (565)
Q Consensus 390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi 469 (565)
+.++++++.+|++..+.+.+|..+...|++++|++.|+++++. +|.++ .++..+|.++..+|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNS-------RYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999654 45433 46788999999999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 470 ~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
+.+++ +...+|.++.........+...+..- .++++++++++|+...+..-..+.
T Consensus 72 ~~~~~-~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 72 DAYAL-AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHH-HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999 66678888765332222221122111 789999999999887755444433
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=5.7e-09 Score=109.78 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=76.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
....+.++.+++.++.+|...+-.+++++|+.-|++++++||+++.++..++.+.+++++++++...|+.++++ .
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-----F 458 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-----F 458 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C
Confidence 33444445566777777777777777777777777777777777777777777777777777777777777554 2
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
|+-+ +.+...|.++..++++++|++.|++ +.+++|.
T Consensus 459 P~~~-------Evy~~fAeiLtDqqqFd~A~k~YD~-ai~LE~~ 494 (606)
T KOG0547|consen 459 PNCP-------EVYNLFAEILTDQQQFDKAVKQYDK-AIELEPR 494 (606)
T ss_pred CCCc-------hHHHHHHHHHhhHHhHHHHHHHHHH-HHhhccc
Confidence 4333 2344467777777777777777777 5667666
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.98 E-value=7.8e-09 Score=125.27 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=128.5
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHH--------------HHHHHHHHHHcCCHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA--------------LILMGQTQLQKGLLEEAVE 424 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A--------------~~~LG~~~~~~g~~~eA~~ 424 (565)
.+.+...+.+++.++.+|..+.+.|++++|+.+|+++++.+|++... ...+|.++...|++++|++
T Consensus 293 ~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 293 QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 33444456678999999999999999999999999999999987532 2355888999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH-----------
Q 008435 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG----------- 493 (565)
Q Consensus 425 ~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~----------- 493 (565)
+|++++++ +|+++ .++..+|.++..+|++++|+++|++ +...+|+++.........
T Consensus 373 ~~~~Al~~-----~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~-aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 373 LYQQARQV-----DNTDS-------YAVLGLGDVAMARKDYAAAERYYQQ-ALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHHHHHHh-----CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 99999764 46543 4677899999999999999999999 666888887543211111
Q ss_pred ------------------------HHHHHHHH---------HHHHHHHHhcCCCcHHHH-------HhhhhhhHHHhhhh
Q 008435 494 ------------------------LVVLARYV---------ANITFLIFATSPSIINLL-------TVSNIIDIIYVNCY 533 (565)
Q Consensus 494 ------------------------~~~La~~l---------~~~l~~Al~l~P~~~~~l-------~~~~~~~~~~~~~~ 533 (565)
+..++..+ +++++++++++|+...++ .+.++.+++...+.
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11122222 788999999999865533 22333333333333
Q ss_pred hhh--hhhhhhhhccchhHHHH
Q 008435 534 ELK--KKRFASCFFGFSVLYVM 553 (565)
Q Consensus 534 ~~~--~~~~~~~~~~~~~~~~~ 553 (565)
++. .+..+++++.+|..+..
T Consensus 520 ~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 520 RLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHcCCCCHHHHHHHHHHHHh
Confidence 222 24467777777766543
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.95 E-value=5.9e-09 Score=90.99 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
++.++..|..+.+.|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+++|+++++. +|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~--- 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSP--- 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCC---
Confidence 5678999999999999999999999999999987 679999999999999999999999999654 34322
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
....+++.+|.++...|++++|+.++++ +....|+++.
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~~ 111 (119)
T TIGR02795 74 -KAPDALLKLGMSLQELGDKEKAKATLQQ-VIKRYPGSSA 111 (119)
T ss_pred -cccHHHHHHHHHHHHhCChHHHHHHHHH-HHHHCcCChh
Confidence 1124577899999999999999999999 6667787764
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.7e-08 Score=105.76 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+|..|-.|.=+..+++.++|+.+|++||++||+...||..+|--|....+-..|++.|++|+++ +|.|.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-----~p~Dy------ 398 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-----NPRDY------ 398 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-----CchhH------
Confidence 4445556655556666666666666666666666666666666666666666666666666543 23322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~ 514 (565)
+||+++|++|.-++...=|+-+|++ +..+-|+|+..+....+.+-.+.... +++|++++..+-.
T Consensus 399 -RAWYGLGQaYeim~Mh~YaLyYfqk-A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 399 -RAWYGLGQAYEIMKMHFYALYYFQK-ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred -HHHhhhhHHHHHhcchHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 4566666666666666666666666 55566666655444444443333333 5666666665544
No 55
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.87 E-value=3.9e-08 Score=113.78 Aligned_cols=104 Identities=20% Similarity=0.307 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+.+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|...++++++. .|+++
T Consensus 192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~----- 261 (899)
T TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKK-----APNSP----- 261 (899)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCc-----
Confidence 44455555555555555555555555555555555555555555555555555555555555332 22211
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.+++..|.++...|++++|+..|++ +...+|++.
T Consensus 262 --~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~~~ 295 (899)
T TIGR02917 262 --LAHYLKALVDFQKKNYEDARETLQD-ALKSAPEYL 295 (899)
T ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCch
Confidence 1334455666666666666666666 444455543
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.82 E-value=7.4e-08 Score=102.33 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.++.+|..+.+.|++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++. +|. ....
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~------~~~~ 250 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPE------YLSE 250 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----Chh------hHHH
Confidence 46688989999999999999999999999999999999999999999999999999999653 232 1123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL 519 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l 519 (565)
++..++.+|...|++++|++.+++ +...+|+.... ......+...+..- .+.++++++.+|+...+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~-~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRR-ALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 456689999999999999999999 55567765421 11111111111111 788999999999876543
No 57
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=7.9e-09 Score=82.21 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l 432 (565)
+++.+..+|..+...|++++|+..|+++++.||+++.+|+.+|.++...| ++++|+++|++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999999999999999999999999 799999999999765
No 58
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.82 E-value=3.9e-08 Score=108.67 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=104.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Q 008435 360 LKISVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--------LEEAVEYLEC 428 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~--------~~eA~~~~~r 428 (565)
.+..+.+.++.+++.+|..+...++ .++|+.+|++|+++||+++.+|..++.+|..... .++|.+..++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4566778889999999999987655 7789999999999999999999999998876532 3344555555
Q ss_pred HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------
Q 008435 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------- 501 (565)
Q Consensus 429 Al~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------- 501 (565)
++++ ..+|.++ .+|..+|..+...|++++|..++++ +..++|. .. ++..+|..+
T Consensus 410 a~al---~~~~~~~-------~~~~ala~~~~~~g~~~~A~~~l~r-Al~L~ps-~~-------a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 410 IVAL---PELNVLP-------RIYEILAVQALVKGKTDEAYQAINK-AIDLEMS-WL-------NYVLLGKVYELKGDNR 470 (517)
T ss_pred hhhc---ccCcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCC-HH-------HHHHHHHHHHHcCCHH
Confidence 5332 1223222 4567788888899999999999999 6778873 32 233455444
Q ss_pred --HHHHHHHHhcCCCcHH
Q 008435 502 --ANITFLIFATSPSIIN 517 (565)
Q Consensus 502 --~~~l~~Al~l~P~~~~ 517 (565)
++.|++|+.++|.+..
T Consensus 471 eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 471 LAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCCCch
Confidence 8999999999998764
No 59
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.82 E-value=3.5e-08 Score=79.86 Aligned_cols=98 Identities=27% Similarity=0.366 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++. .|.+. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDNA-------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcch-------h
Confidence 46788999999999999999999999999999999999999999999999999999999653 34322 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
++..+|.++...|++++|.+++++ +...+|
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~ 99 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEK-ALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH-HHccCC
Confidence 567799999999999999999999 554444
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.6e-08 Score=103.82 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
-+..+|..+.++.+.++-...|++|.++||+|++.|+..|++++-.+++++|+.-|++++++ +|.+. .
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-----~pe~~-------~ 429 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-----DPENA-------Y 429 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-----Chhhh-------H
Confidence 38888999999999999999999999999999999999999999999999999999999775 34322 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc------HH-----
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI------IN----- 517 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~------~~----- 517 (565)
++..++.+.+++++++++...|+. +....|+-+.....+.+.+.--.++- .+.|.+++++.|.. ..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee-~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEE-AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 677788889999999999999999 77789999988777776665555555 88999999998871 10
Q ss_pred --H---H-HhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHH
Q 008435 518 --L---L-TVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 518 --~---l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
+ | .+.++...++..+.++. .|=+-||-++|-+-+.-+.+
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhH
Confidence 1 1 22233334444444444 44888888888776665554
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=8.6e-09 Score=105.13 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.++..++..|..+.+.|+.++|+..+++|++.+|+|..++..++.++...|+.+++.+.+++..+. .|+++
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~~~~~---- 214 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-----APDDP---- 214 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----CcCHH----
Confidence 367788899999999999999999999999999999999999999999999999987777776443 13322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR 499 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~ 499 (565)
..+..+|.++..+|++++|+.+|++ +...+|+|+....+|.+++...|.
T Consensus 215 ---~~~~~la~~~~~lg~~~~Al~~~~~-~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 215 ---DLWDALAAAYLQLGRYEEALEYLEK-ALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp ---CHCHHHHHHHHHHT-HHHHHHHHHH-HHHHSTT-HHHHHHHHHHHT----
T ss_pred ---HHHHHHHHHhccccccccccccccc-cccccccccccccccccccccccc
Confidence 1244588999999999999999999 666899999776655555444443
No 62
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.81 E-value=7.8e-09 Score=81.38 Aligned_cols=60 Identities=33% Similarity=0.540 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+.+|..+++.|++++|+..|+++++.+|+++++|+.+|.++...|++++|+++|+++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999765
No 63
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=4.5e-08 Score=99.09 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHH-HHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 366 NLTPKELIALSVKF-LSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 366 ~~~~~~l~~lA~~l-~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+.+....|..|..+ ...|++++|+..|++.++.+|++ +.+++++|.+|+..|++++|+.+|+++++. .|++
T Consensus 139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s 213 (263)
T PRK10803 139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKS 213 (263)
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence 44678889999987 56799999999999999999999 589999999999999999999999999765 3543
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+ ....+++.+|.++..+|++++|++.|++ +....|+..
T Consensus 214 ~----~~~dAl~klg~~~~~~g~~~~A~~~~~~-vi~~yP~s~ 251 (263)
T PRK10803 214 P----KAADAMFKVGVIMQDKGDTAKAKAVYQQ-VIKKYPGTD 251 (263)
T ss_pred c----chhHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCH
Confidence 3 2235788899999999999999999999 555667655
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=1e-07 Score=93.92 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.+.+.+-.+|..+...|++.+|+..+++|..++|+|.++|..+|.+|.+.|++++|...|.+|+++ .|.++
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p--- 168 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEP--- 168 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCc---
Confidence 4466777779999999999999999999999999999999999999999999999999999999765 45544
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~ 487 (565)
.+..++|..+.-.|+++.|..++.+ +....+.|..+.
T Consensus 169 ----~~~nNlgms~~L~gd~~~A~~lll~-a~l~~~ad~~v~ 205 (257)
T COG5010 169 ----SIANNLGMSLLLRGDLEDAETLLLP-AYLSPAADSRVR 205 (257)
T ss_pred ----hhhhhHHHHHHHcCCHHHHHHHHHH-HHhCCCCchHHH
Confidence 3567799999999999999999999 554555565443
No 65
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=1.4e-07 Score=98.18 Aligned_cols=128 Identities=10% Similarity=0.021 Sum_probs=70.7
Q ss_pred HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (565)
Q Consensus 379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~ 457 (565)
+...++.++|+..+.++|+++|++..+|+..|.++...| ++++|++.++++++. +|++. .+|.+.+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----npkny-------qaW~~R~~ 114 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-----NPKNY-------QIWHHRRW 114 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----CCcch-------HHhHHHHH
Confidence 344567777777777777777777777777777777776 467777777777543 34332 23444555
Q ss_pred HHHHcCCH--HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHH
Q 008435 458 ACIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLL 519 (565)
Q Consensus 458 a~~~~g~~--~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l 519 (565)
++...|+. +++++.+++ +...+|++-.++.+....+..++... ++++.++++.||++..+|
T Consensus 115 ~l~~l~~~~~~~el~~~~k-al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRK-ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHHHcCchhhHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 55555542 445555555 44455555443322211221222111 555555555555544433
No 66
>PRK11906 transcriptional regulator; Provisional
Probab=98.76 E-value=6.6e-08 Score=102.79 Aligned_cols=143 Identities=10% Similarity=0.082 Sum_probs=112.7
Q ss_pred hhcCCCCCC---CHH--HHHHHHHHHHHCC---CCCchHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---C------C
Q 008435 359 QLKISVENL---TPK--ELIALSVKFLSKG---DKERPIPLLQLAL---NKEPDNINALILMGQTQLQK---G------L 418 (565)
Q Consensus 359 ~~~~~~~~~---~~~--~l~~lA~~l~~~g---~~~eAi~~l~~AL---~~dP~~a~A~~~LG~~~~~~---g------~ 418 (565)
.++.++++. +++ ++|..|..++..+ +.++|+.+|++|+ ++||+++.+|..++.++... | .
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 456667777 888 9999999987766 5567999999999 99999999999999998865 2 3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH--
Q 008435 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV-- 496 (565)
Q Consensus 419 ~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~-- 496 (565)
..+|.++.++|+++ +|.|+ .++..+|.+....|+++.|...|++ +..++|+.+.. +|+.+++.
T Consensus 320 ~~~a~~~A~rAvel-----d~~Da-------~a~~~~g~~~~~~~~~~~a~~~f~r-A~~L~Pn~A~~--~~~~~~~~~~ 384 (458)
T PRK11906 320 AQKALELLDYVSDI-----TTVDG-------KILAIMGLITGLSGQAKVSHILFEQ-AKIHSTDIASL--YYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHhhcchhhHHHHHHH-HhhcCCccHHH--HHHHHHHHHH
Confidence 46788888888654 56655 4778899999999999999999999 88899999866 44333322
Q ss_pred HHHHH--HHHHHHHHhcCCCcH
Q 008435 497 LARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 497 La~~l--~~~l~~Al~l~P~~~ 516 (565)
-|... .+.++++++++|.-.
T Consensus 385 ~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 385 NEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cCCHHHHHHHHHHHhccCchhh
Confidence 11111 899999999999744
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.74 E-value=1.2e-07 Score=110.38 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.+.++..+..+|..+...|++++|+.+++++++.+|+++.++..+|.++...|++++|+++++++++. +|+++
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~-- 117 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-----APDKA-- 117 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence 56667777788888888888888888888888888888888888888888888888888888888543 45443
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
. +..+|.++...|++++|+..+++ +...+|+++..
T Consensus 118 -----~-~~~la~~l~~~g~~~~Al~~l~~-al~~~P~~~~~ 152 (765)
T PRK10049 118 -----N-LLALAYVYKRAGRHWDELRAMTQ-ALPRAPQTQQY 152 (765)
T ss_pred -----H-HHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHH
Confidence 2 44577788888888888888888 55677777654
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.73 E-value=2.2e-07 Score=87.47 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..+..++..|..+...|++++|+..|++++.+.|++ +.+|+.+|.++...|++++|+++|++|+++ +|...+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~ 107 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHH
Confidence 346778999999999999999999999999997763 569999999999999999999999999754 454331
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.......++..+|..+...|++++|+..+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 1111112333344444488888877777766
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.69 E-value=1.1e-07 Score=96.89 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
+..+......+...++++++...++++.... ++++..|..+|.++.+.|++++|++.|++|+++ +|+++
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~---- 180 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDP---- 180 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-H----
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH----
Confidence 3444455566788999999999999987766 789999999999999999999999999999775 46544
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI 524 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~ 524 (565)
.+...++.++...|+++++.+.+++ .....|.++.....+..++..++..- ..+++++++.+|+....+.....
T Consensus 181 ---~~~~~l~~~li~~~~~~~~~~~l~~-~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 181 ---DARNALAWLLIDMGDYDEAREALKR-LLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp ---HHHHHHHHHHCTTCHHHHHHHHHHH-HHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred ---HHHHHHHHHHHHCCChHHHHHHHHH-HHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 2455578889999999999999988 55566788876555555555555444 89999999999987766555433
No 70
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=1.5e-07 Score=89.05 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
...+..++.+|..+...|++++|+.+|+++++.+|+. +.+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 106 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQP 106 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH
Confidence 3456778999999999999999999999999988764 579999999999999999999999999764 34432
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCCc
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSI 515 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~~ 515 (565)
.++..+|.++...|+...+...+++ +.. .+ ..+ .++++++++.+|+.
T Consensus 107 -------~~~~~lg~~~~~~g~~~~a~~~~~~-A~~----------~~-----~~A---~~~~~~a~~~~p~~ 153 (172)
T PRK02603 107 -------SALNNIAVIYHKRGEKAEEAGDQDE-AEA----------LF-----DKA---AEYWKQAIRLAPNN 153 (172)
T ss_pred -------HHHHHHHHHHHHcCChHhHhhCHHH-HHH----------HH-----HHH---HHHHHHHHhhCchh
Confidence 3466789999888887776666655 220 01 001 46678888888864
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=4.1e-07 Score=91.89 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+.-+|++|..+....+.++|+..+++|++.||++++|-..+|.++...|+++.|++.++++++. +++..
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----------n~~yl 248 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----------NPEYL 248 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----------ChHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999754 34555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l 519 (565)
.++...|-.||.++|+.++++..+.+ +.+.+++... ...++... ..++.+-+..+|+...+.
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~-~~~~~~g~~~--------~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRR-AMETNTGADA--------ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH-HHHccCCccH--------HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 56677788999999999999999999 5444443321 11222222 677788899999977654
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=3.6e-07 Score=90.44 Aligned_cols=110 Identities=17% Similarity=0.237 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhhcC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQK--------GLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~---A~~~LG~~~~~~--------g~~~eA~~~~~rAl~l~~l~~ 437 (565)
.+.++.+|..+...|++++|+..++++++.+|+++. +++.+|.++... |++++|++.|+++++.
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 144 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----- 144 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----
Confidence 456789999999999999999999999999999877 799999999987 7899999999999754
Q ss_pred CCCChhhhhHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 438 HPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 438 ~P~~~~~~~~~----------~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+|++....... ......+|..+...|++++|+..+++ +....|+++
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~-al~~~p~~~ 200 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET-VVENYPDTP 200 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHCCCCc
Confidence 46543211111 01234678899999999999999999 666777765
No 73
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.67 E-value=7e-07 Score=103.52 Aligned_cols=170 Identities=12% Similarity=0.019 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+..+...+..+....++|++++|+..|+++++.+|+++.+.+.+..++...|+.++|+.++++++ +|.+.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-------~p~n~--- 100 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-------SSMNI--- 100 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-------cCCCC---
Confidence 33567889999999999999999999999999999997665589999999999999999999994 23221
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSII 516 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~ 516 (565)
+ ......+|.++..+|++++|++.|++ +...+|+++.... .++..+ .+.++++++.+|+..
T Consensus 101 ~--~~~llalA~ly~~~gdyd~Aiely~k-aL~~dP~n~~~l~-------gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 101 S--SRGLASAARAYRNEKRWDQALALWQS-SLKKDPTNPDLIS-------GMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHH-------HHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 1 12233457789999999999999999 6778999875432 222222 778888888889865
Q ss_pred HHHHhhh------hhhHHHhhhhhhhh--hhhhhhhccchhHHHHHH
Q 008435 517 NLLTVSN------IIDIIYVNCYELKK--KRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 517 ~~l~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 555 (565)
..+.... +..+.++.+.++.+ +-.++++.++-.+..+++
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4332221 11122232222211 225566666655555544
No 74
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=9e-07 Score=93.88 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+......|..|...+..|++++|++.++..+...|+|+..+-..|.++...++.++|.+.+++++++ +|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~--- 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSP--- 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcc---
Confidence 3567788999999999999999999999999999999999999999999999999999999999654 46533
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~ 493 (565)
....++|.++.+.|+++||+..+++ ....+|+||..+..+.++
T Consensus 375 ----~l~~~~a~all~~g~~~eai~~L~~-~~~~~p~dp~~w~~LAqa 417 (484)
T COG4783 375 ----LLQLNLAQALLKGGKPQEAIRILNR-YLFNDPEDPNGWDLLAQA 417 (484)
T ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHH-HhhcCCCCchHHHHHHHH
Confidence 2466799999999999999999999 777899999765533333
No 75
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=1.9e-07 Score=97.21 Aligned_cols=142 Identities=9% Similarity=-0.038 Sum_probs=111.8
Q ss_pred CCCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL--EEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~--~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
.+.+...+..++..+...| ++++|+..++++++.+|++..+|+..|.++...|+. ++++++++++++. +|++
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-----dpkN 141 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-----DAKN 141 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-----Cccc
Confidence 3445566777787887777 679999999999999999999999999999999874 7889999999654 4554
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HH------HHHHHHHHHHhcC
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---AR------YVANITFLIFATS 512 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~------~l~~~l~~Al~l~ 512 (565)
. .+|.+.|.++...|++++|++.+++ +...+|++..++.+....+..+ +. ..+++..+++..+
T Consensus 142 y-------~AW~~R~w~l~~l~~~~eeL~~~~~-~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 142 Y-------HAWSHRQWVLRTLGGWEDELEYCHQ-LLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred H-------HHHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 4 5788899999999999999999999 6678999987654433222222 10 1178889999999
Q ss_pred CCcHHHH
Q 008435 513 PSIINLL 519 (565)
Q Consensus 513 P~~~~~l 519 (565)
|++..+|
T Consensus 214 P~N~SaW 220 (320)
T PLN02789 214 PRNESPW 220 (320)
T ss_pred CCCcCHH
Confidence 9976655
No 76
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=9.3e-08 Score=95.92 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=88.8
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~ 436 (565)
.|..+|...|.++.-+|.+|.+|.+.|+++.|++-++.||++||++.++|..||.+|..+|++++|++.|+||++
T Consensus 103 kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe----- 177 (304)
T KOG0553|consen 103 KYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE----- 177 (304)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc-----
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHcCCHH---HHHHHHHH
Q 008435 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWE---EGIAHLER 474 (565)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~---eAi~~ler 474 (565)
++|++.. ..-+|..+...+++.. .+...++-
T Consensus 178 ldP~Ne~-------~K~nL~~Ae~~l~e~~~~~~~~~~~d~ 211 (304)
T KOG0553|consen 178 LDPDNES-------YKSNLKIAEQKLNEPKSSAQASGSFDM 211 (304)
T ss_pred cCCCcHH-------HHHHHHHHHHHhcCCCcccccccchhh
Confidence 5687651 2334666666666655 44444444
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.64 E-value=1e-07 Score=75.72 Aligned_cols=68 Identities=34% Similarity=0.477 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcc
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLK 479 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l 479 (565)
+++.+|..+|.++...|++++|+.+|++|++. +|+++ .+++++|.++..+| ++++|++.+++ +..+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~-------~~~~~~g~~~~~~~~~~~~A~~~~~~-al~l 67 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNA-------EAYYNLGLAYMKLGKDYEEAIEDFEK-ALKL 67 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHH-------HHHHHHHHHHHHTTTHHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhCccHHHHHHHHHH-HHHc
Confidence 47899999999999999999999999999875 35433 47899999999999 79999999999 6656
Q ss_pred CC
Q 008435 480 EP 481 (565)
Q Consensus 480 ~P 481 (565)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 65
No 78
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.4e-07 Score=96.68 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred CCchh-hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 354 ESPAK-QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 354 ~~~~~-~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+..+| -..+..+..++..+..+|...+..|++++|...|+.||.-|..+.+|+++.|..+..+|+.+||+++|-+.-.+
T Consensus 474 ~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 474 DAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred HHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence 34455 23456667788999999999999999999999999999999999999999999999999999999999887544
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
+ + ....+++.++.+|..+++..+|++++-+ +..+-|+||..
T Consensus 554 l---~---------nn~evl~qianiye~led~aqaie~~~q-~~slip~dp~i 594 (840)
T KOG2003|consen 554 L---L---------NNAEVLVQIANIYELLEDPAQAIELLMQ-ANSLIPNDPAI 594 (840)
T ss_pred H---H---------hhHHHHHHHHHHHHHhhCHHHHHHHHHH-hcccCCCCHHH
Confidence 2 0 0124677899999999999999999999 77889999864
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=3.3e-07 Score=104.40 Aligned_cols=113 Identities=11% Similarity=-0.047 Sum_probs=98.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...|.+.......|..+.+.+++++|+..++++++.+|+++.+++.+|.++.+.|+++||+++|+++++ .+
T Consensus 110 ~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-----~~ 184 (694)
T PRK15179 110 RGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR-----QH 184 (694)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh-----cC
Confidence 4556666778899999999999999999999999999999999999999999999999999999999999964 34
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
|+++ .++.++|.++...|+.++|...|++++....|.-
T Consensus 185 p~~~-------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 185 PEFE-------NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 5433 4688899999999999999999999666555443
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.63 E-value=6.8e-08 Score=80.23 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=66.2
Q ss_pred HCCCCCchHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008435 381 SKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~dP~--~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a 458 (565)
.+|++++|+..++++++.+|. +...++.+|.++++.|++++|++.+++ .+.. .. ....++.+|.|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----------~~-~~~~~~l~a~~ 67 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----------PS-NPDIHYLLARC 67 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----------HC-HHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----------CC-CHHHHHHHHHH
Confidence 368999999999999999995 577788899999999999999999988 3321 11 12356668999
Q ss_pred HHHcCCHHHHHHHHHH
Q 008435 459 CIRQEKWEEGIAHLER 474 (565)
Q Consensus 459 ~~~~g~~~eAi~~ler 474 (565)
+..+|++++|+++|++
T Consensus 68 ~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhc
Confidence 9999999999999998
No 81
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=4.2e-07 Score=90.62 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
+++.+|+.|..++..|+|.+|+..|+.-++..|++ ++|+|+||.+++.+|++++|...|.++++. .|+.+..
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KA 214 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKA 214 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCC
Confidence 45569999999999999999999999999999997 789999999999999999999999999653 4655433
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+ ++++.+|.+..++|+.|+|...|++ +...-|..+
T Consensus 215 p----dallKlg~~~~~l~~~d~A~atl~q-v~k~YP~t~ 249 (262)
T COG1729 215 P----DALLKLGVSLGRLGNTDEACATLQQ-VIKRYPGTD 249 (262)
T ss_pred h----HHHHHHHHHHHHhcCHHHHHHHHHH-HHHHCCCCH
Confidence 3 4677899999999999999999999 444555554
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.4e-07 Score=99.35 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
.-.+-+|..+.+.++.+.|..+|.+|+.+.|+++-.++.+|.+.+..+.|.+|+.+|+.++... -...+. .+ ...
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i-k~~~~e---~~-~w~ 455 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI-KSVLNE---KI-FWE 455 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh-hhcccc---cc-chh
Confidence 3466789999999999999999999999999999999999999999999999999999997432 011111 11 111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH---HHHHhh
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII---NLLTVS 522 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~---~~l~~~ 522 (565)
-.+.++|.++.+++++++|+..+++ +..++|.++.......-.+..+|..- +++|.+++.++|+.. +.++.+
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~-aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQK-ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHH-HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 2366799999999999999999999 77799999865432211111222222 899999999999863 444443
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.62 E-value=4.5e-07 Score=83.87 Aligned_cols=119 Identities=11% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008435 393 QLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471 (565)
Q Consensus 393 ~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ 471 (565)
.-...++ ++.-+..|.+|..+++.|++++|+..|+-.... +|.+. .-+++||.++..+|++++|++.
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~-------~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSF-------DYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-------HHHHHHHHHHHHHhhHHHHHHH
Confidence 4456788 899999999999999999999999999998543 45433 4588899999999999999999
Q ss_pred HHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcC---CCcHHHHHhhhh
Q 008435 472 LERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATS---PSIINLLTVSNI 524 (565)
Q Consensus 472 leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~---P~~~~~l~~~~~ 524 (565)
|.+ +..++|+||....+...++..+|+.- .+.|+.++..- |.+..+.++.+.
T Consensus 92 Y~~-A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 92 YGR-AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHH-HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 999 77799999976443333333333333 67777777654 555555554443
No 84
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.8e-06 Score=84.81 Aligned_cols=141 Identities=13% Similarity=0.027 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...--..|..+...|++++|+++|+..|+.||.|.-++-..=-+.-.+|+.-+|++....-++. .+.|.
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~------ 154 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQ------ 154 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcH------
Confidence 3344566777777888888888888888888888888777777777778888888777766543 23332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----HHHHHHHHhcCCCcHHHHHhh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----~~~l~~Al~l~P~~~~~l~~~ 522 (565)
++|..++.+|...|+|++|.-.||+ ....+|.+|.....+.+.++..|..- .++|.++++++|.+-..+-++
T Consensus 155 -EAW~eLaeiY~~~~~f~kA~fClEE-~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 155 -EAWHELAEIYLSEGDFEKAAFCLEE-LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred -HHHHHHHHHHHhHhHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 4778899999999999999999999 66689999877666777666666544 899999999999655444443
No 85
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.1e-07 Score=91.69 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=99.5
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhh
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFL 435 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l 435 (565)
...+...|-|++.+..+|..++..|+++.|...|++|++++|+|++.+..+|.+++... ...+|.+.+++|++
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---- 221 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---- 221 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh----
Confidence 45666677789999999999999999999999999999999999999999999987664 35889999999965
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
.||.|. .+.+.+|..++++|+|++|+..++.+...+.|+++.
T Consensus 222 -~D~~~i-------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 222 -LDPANI-------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred -cCCccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 456654 567789999999999999999999977767777764
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.60 E-value=8.3e-07 Score=103.31 Aligned_cols=135 Identities=9% Similarity=0.023 Sum_probs=112.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..+.++........+..-.|+.++|+..++++...+|..+.++..+|.++...|++++|+++|++++++ +|.++
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~- 83 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND- 83 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-
Confidence 445667777777777889999999999999999999999999999999999999999999999999654 56554
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS 514 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~ 514 (565)
.++..++.++...|++++|++++++ +...+|+++. .. .+|..+ ++.++++++.+|+
T Consensus 84 ------~a~~~la~~l~~~g~~~eA~~~l~~-~l~~~P~~~~-~~-------~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 84 ------DYQRGLILTLADAGQYDEALVKAKQ-LVSGAPDKAN-LL-------ALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred ------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHH-HH-------HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3456789999999999999999999 6667898875 32 333333 8999999999999
Q ss_pred cHHHH
Q 008435 515 IINLL 519 (565)
Q Consensus 515 ~~~~l 519 (565)
..+++
T Consensus 149 ~~~~~ 153 (765)
T PRK10049 149 TQQYP 153 (765)
T ss_pred CHHHH
Confidence 77654
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.9e-06 Score=85.11 Aligned_cols=107 Identities=22% Similarity=0.254 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+.+. +..+..+...|+-+++.....+++..+|.+.+.+..+|..+.+.|++.+|+..+++|. .++|+|.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-----~l~p~d~----- 134 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-----RLAPTDW----- 134 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-----ccCCCCh-----
Confidence 3444 7888889999999999999999999999999999999999999999999999999994 4567766
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
.++..+|.+|.+.|++++|...|.+ +..+.|++|....
T Consensus 135 --~~~~~lgaaldq~Gr~~~Ar~ay~q-Al~L~~~~p~~~n 172 (257)
T COG5010 135 --EAWNLLGAALDQLGRFDEARRAYRQ-ALELAPNEPSIAN 172 (257)
T ss_pred --hhhhHHHHHHHHccChhHHHHHHHH-HHHhccCCchhhh
Confidence 4577799999999999999999999 7779999997644
No 88
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.58 E-value=1.3e-06 Score=87.63 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~---~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
.++++.+..|..+...|++++|+..|++++..+|+...+. +.+|.++.+.+++++|+.+|++.++. .|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence 4788999999999999999999999999999999997665 99999999999999999999999765 576552
Q ss_pred hhhHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHhhccCCCCc
Q 008435 444 AIDLLIVASQWSGVACIRQE---------------K---WEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g---------------~---~~eAi~~leraa~~l~P~~~ 484 (565)
. ..+++.+|.++...+ + ..+|++.|++ ....-|+..
T Consensus 105 ~----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~-li~~yP~S~ 158 (243)
T PRK10866 105 I----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK-LVRGYPNSQ 158 (243)
T ss_pred h----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH-HHHHCcCCh
Confidence 2 246788888865544 1 2467788888 555666654
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=8.6e-08 Score=96.65 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=114.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+..-|.+.--++.+|..+...+++++|.++|+.+++.+|.|+++..-.|.-|+..++++-|+.+|+|.+.+. -.+
T Consensus 283 ld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~s 357 (478)
T KOG1129|consen 283 LDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQS 357 (478)
T ss_pred hhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCC
Confidence 333455566688899999999999999999999999999999999999999999999999999999997653 111
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH--HHH--HHHHHHHHhcCCCcHH
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA--RYV--ANITFLIFATSPSIIN 517 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La--~~l--~~~l~~Al~l~P~~~~ 517 (565)
+ +-+.++|.|+...+++|-++..|+|+.......+-....||..+.+..+ ... ..+++-++.-||++.+
T Consensus 358 p-------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 358 P-------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred h-------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 2 2467799999999999999999999544333222334556644433322 111 7899999999999988
Q ss_pred HHHhhh
Q 008435 518 LLTVSN 523 (565)
Q Consensus 518 ~l~~~~ 523 (565)
++.+..
T Consensus 431 alnNLa 436 (478)
T KOG1129|consen 431 ALNNLA 436 (478)
T ss_pred HHHhHH
Confidence 776653
No 90
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.56 E-value=2.1e-06 Score=96.50 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...++.+|..+...|++++|+..+..++..||.++.||+.||.+|.++|+.++|...+-.|. -++|.+. +
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-----HL~p~d~---e-- 208 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-----HLNPKDY---E-- 208 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH-----hcCCCCh---H--
Confidence 56778889999999999999999999999999999999999999999999999999988883 3467654 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCC
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSP 513 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P 513 (565)
-|..++....++|++++|+-.|.| +...+|.+-+........+-..|..- .+.+++.+.++|
T Consensus 209 --~W~~ladls~~~~~i~qA~~cy~r-AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 209 --LWKRLADLSEQLGNINQARYCYSR-AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 255588888999999999999999 66677776433222222222223332 789999999999
No 91
>PRK15331 chaperone protein SicA; Provisional
Probab=98.56 E-value=5.7e-07 Score=83.58 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.-+..|..|..+++.|++++|...|+-....||.+.+-|..||-++..+++|++|++.|..|..+ +++|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp----- 105 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDY----- 105 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCC-----
Confidence 35778999999999999999999999999999999999999999999999999999999999543 35544
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.+.+..|.|+..+|+.++|+..|+.+.. .|++.
T Consensus 106 --~p~f~agqC~l~l~~~~~A~~~f~~a~~--~~~~~ 138 (165)
T PRK15331 106 --RPVFFTGQCQLLMRKAAKARQCFELVNE--RTEDE 138 (165)
T ss_pred --CccchHHHHHHHhCCHHHHHHHHHHHHh--CcchH
Confidence 2356699999999999999999999433 45554
No 92
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.54 E-value=1.7e-06 Score=76.83 Aligned_cols=99 Identities=22% Similarity=0.165 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
++-..|+.+.+.|+.+.|++.|.++|.+-|+.+.+|.+.++.+.-+|+.++|++-+++|+++. ++.. .....
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~t-----rtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQT-----RTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cccc-----hHHHH
Confidence 455678899999999999999999999999999999999999999999999999999998753 2211 12235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
++...|..|..+|+.|+|..-|+.++.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 788899999999999999999999544
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.50 E-value=3.5e-07 Score=71.85 Aligned_cols=65 Identities=26% Similarity=0.406 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+.+|..+.+.|++++|++.|+++++ .+|+++ .+++++|.++..+|++++|+++|++ +...+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~-----~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK-----QDPDNP-------EAWYLLGRILYQQGRYDEALAYYER-ALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC-----CSTTHH-------HHHHHHHHHHHHTT-HHHHHHHHHH-HHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCC
Confidence 4689999999999999999999964 345433 5788999999999999999999999 666888875
No 94
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.47 E-value=3.5e-06 Score=82.15 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
.++++++..|..+++.|++++|+..|++.+...|++ ..|.+.+|.++...|++++|+..|++-++. .|+.+.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~ 77 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPK 77 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcc
Confidence 368899999999999999999999999999999876 789999999999999999999999999765 365442
Q ss_pred hhhHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhccCCCCch
Q 008435 444 AIDLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~-----------g~~~eAi~~leraa~~l~P~~~~ 485 (565)
...+++.+|.++..+ +...+|+..|++ ....-|+.+-
T Consensus 78 ----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~-li~~yP~S~y 125 (203)
T PF13525_consen 78 ----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEE-LIKRYPNSEY 125 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHH-HHHH-TTSTT
T ss_pred ----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHH-HHHHCcCchH
Confidence 235788888886554 334589999999 5567777764
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.45 E-value=1.5e-06 Score=91.17 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.....+..+|..+...|++++|+..++++++++|+++.++..+|.++.+.|++++|+++++++++. .|.+ .
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-----~~~~---~ 182 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-----WDCS---S 182 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCC---c
Confidence 4456677788999999999999999999999999999999999999999999999999999999653 2321 1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
......+..+|.++..+|++++|+..|++ +....|
T Consensus 183 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~-~~~~~~ 217 (355)
T cd05804 183 MLRGHNWWHLALFYLERGDYEAALAIYDT-HIAPSA 217 (355)
T ss_pred chhHHHHHHHHHHHHHCCCHHHHHHHHHH-Hhcccc
Confidence 22223466799999999999999999999 443444
No 96
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.4e-06 Score=88.02 Aligned_cols=140 Identities=16% Similarity=0.106 Sum_probs=105.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~----~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
-.-|..|++.|+|..|...|+||++.+. ..+..+.+. -.....++.+++.||..+++|.+|+.+.++ ++..+|+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~-~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k-vLe~~~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLE-YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK-VLELDPN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhh-ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH-HHhcCCC
Confidence 4568889999999999999999987641 111111111 112233688999999999999999999999 7779999
Q ss_pred CchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhhccch
Q 008435 483 EPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFS 548 (565)
Q Consensus 483 ~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (565)
|.+....-..++..++... +..|+++++++|+++.+..++-...+-...+.+..++.|.+.|-+++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9876443333443444333 89999999999999999988888877778888888999998887765
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.42 E-value=9.1e-07 Score=94.11 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A---~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.++.+++.++.+|..+...|++++|+..|++||+++|+++++ |+++|.+|..+|+.++|++++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999965 999999999999999999999999875
No 98
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=2.4e-06 Score=76.10 Aligned_cols=98 Identities=26% Similarity=0.268 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
+..|+.|..+-..|+.++|+.+|++|++...+. .+++..+|..+...|++++|+..+++++.. .|++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-----~p~~~---- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-----FPDDE---- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcc----
Confidence 568999999999999999999999999976554 779999999999999999999999999653 34422
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
........++.++...|+++||++.+-+++
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111234557889999999999999998833
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=4.9e-06 Score=84.71 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+.+..+++|..++..|++.+|+..|..|++.||++..|++..|-+|...|+-..|+.-+.+++++ .|+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpD------- 104 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPD------- 104 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----Ccc-------
Confidence 56778999999999999999999999999999999999999999999999999999999999765 343
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH-H----HHHHHHH------------HHHHHHHHh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG-L----VVLARYV------------ANITFLIFA 510 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~-~----~~La~~l------------~~~l~~Al~ 510 (565)
+.-|....|.++.++|++++|..-|++ ...-+|.+......+... . ..+-..+ ++++.+.++
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~-vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQ-VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHH-HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 224667789999999999999999999 555677655433322111 0 0011000 788888889
Q ss_pred cCCCcHH
Q 008435 511 TSPSIIN 517 (565)
Q Consensus 511 l~P~~~~ 517 (565)
..|....
T Consensus 184 i~~Wda~ 190 (504)
T KOG0624|consen 184 IQPWDAS 190 (504)
T ss_pred cCcchhH
Confidence 9887554
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.1e-06 Score=91.79 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+++....|..++..|+|.+|+.+|.+||..||+|+..|-+.|.+|...|++.+|+...++++++ +|+ +
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~-------~ 425 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPN-------F 425 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----Cch-------H
Confidence 6677788999999999999999999999999999999999999999999999999999999765 333 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~ 522 (565)
..+|..-|.++....+|++|.+.|++ +...+|++.....+|....-..-... .+..++ .-.+|+...++.+.
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~e-ale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r-~~~dpev~~il~d~ 499 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQE-ALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR-AMADPEVQAILQDP 499 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh-hccCHHHHHHHcCH
Confidence 35788889999999999999999999 77788887765444433321110000 444444 44556666655443
No 101
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=2.9e-06 Score=77.97 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
...+.+|..+...|++++|+..|+++++..|+. ..+.+.+|.++...|++++|+..++++. ...
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-------------~~~ 115 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-------------DEA 115 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------------Ccc
Confidence 344555555666666666666666666655443 3455556666666666666666554430 011
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
....++...|.++...|++++|++.|++
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1122344456666666666666666655
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.9e-06 Score=91.21 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.+..++..|.=++.-|++.+|.++|-+|-.+||.+..||...|..+...|..|+|+.+|.+|-++. |.-.
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-----~G~h----- 380 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-----PGCH----- 380 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-----cCCc-----
Confidence 466688889889999999999999999999999999999999999999999999999999996542 2110
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH-HHHH---HHHHHHHHhc----CCC-----
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL-ARYV---ANITFLIFAT----SPS----- 514 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L-a~~l---~~~l~~Al~l----~P~----- 514 (565)
.....+|.=|.+.+.++-|.+.|.+ +...+|.||-.... .+.+.. ...+ ..++++++.. +++
T Consensus 381 --lP~LYlgmey~~t~n~kLAe~Ff~~-A~ai~P~Dplv~~E--lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 381 --LPSLYLGMEYMRTNNLKLAEKFFKQ-ALAIAPSDPLVLHE--LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred --chHHHHHHHHHHhccHHHHHHHHHH-HHhcCCCcchhhhh--hhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 1244577778888888888888888 66678888754321 111111 0111 4555555521 111
Q ss_pred -----cHHHHHhhhhhhHHHhhhhh--hhhhhhhhhhccchhHHHHHHHHH
Q 008435 515 -----IINLLTVSNIIDIIYVNCYE--LKKKRFASCFFGFSVLYVMLVAML 558 (565)
Q Consensus 515 -----~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 558 (565)
...+...++++++++..+.. .....+++.|..+|-+|.-+|.-.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 22233444555555444433 222347777777777777666443
No 103
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=1.6e-05 Score=87.09 Aligned_cols=105 Identities=20% Similarity=0.120 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
..+...+|..+..+|++++|+..+++|++. .|.-......+|.+|...+++++|+..|++|+.+..-...++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355667999999999999999999999998 677777777799999999999999999999988741112222
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+ +....++.+|+.+|...|+++||..+++++..
T Consensus 279 h----~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 279 H----PAVAATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred C----HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 2 22334678899999999999999999999543
No 104
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.34 E-value=1.1e-05 Score=93.75 Aligned_cols=140 Identities=13% Similarity=0.073 Sum_probs=92.2
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+.+.|.+...+..+|..+..+|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++++. +
T Consensus 92 eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----d 166 (822)
T PRK14574 92 ERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----D 166 (822)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----C
Confidence 33446677777777777888888888888888888888888888888888888888888888888888888432 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCC
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPS 514 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~ 514 (565)
|.+. .+..++.++...++..+|++.+++ +...+|++......++.++..++. ..-..+.++..|+
T Consensus 167 p~~~--------~~l~layL~~~~~~~~~AL~~~ek-ll~~~P~n~e~~~~~~~~l~~~~~--~~~a~~l~~~~p~ 231 (822)
T PRK14574 167 PTVQ--------NYMTLSYLNRATDRNYDALQASSE-AVRLAPTSEEVLKNHLEILQRNRI--VEPALRLAKENPN 231 (822)
T ss_pred cchH--------HHHHHHHHHHhcchHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHhCcc
Confidence 3211 112234444556777678888888 555778877543322211111110 3344456666674
No 105
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.32 E-value=5.2e-06 Score=90.91 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=117.3
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
..|..+...+++++|+..|++|+.+ +|.-+.++.+||.+|...|+++||..++++|+++..-..-. ..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~----~~ 321 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA----SH 321 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc----Ch
Confidence 5899999999999999999999973 46668899999999999999999999999999875110001 11
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC----CCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE----PEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS 512 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~----P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~ 512 (565)
+.....+..++.++...+++++|+.+++++..... ++++.. .....++|..+ .+.+++|+++.
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~----a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL----AKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH----HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 12223466789999999999999999999554433 222211 22234666665 78889988875
Q ss_pred CC--------cHHHH----------HhhhhhhHHHhhhhhhhh---hhh---hhhhccchhHHHHHHH
Q 008435 513 PS--------IINLL----------TVSNIIDIIYVNCYELKK---KRF---ASCFFGFSVLYVMLVA 556 (565)
Q Consensus 513 P~--------~~~~l----------~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~ 556 (565)
-. ....+ +..+++.++++.+.+..+ .-+ ...|-||+.+|.-+|.
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 32 11111 122223344444444332 222 3457888888887663
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.31 E-value=2.5e-06 Score=90.42 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=78.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+.++..++.+|..+...|++++|+..+++|++++|+++.+|+.+|.++...|++++|+.+|++++++ +
T Consensus 26 ~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~ 100 (356)
T PLN03088 26 TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL-----A 100 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----C
Confidence 45556667788999999999999999999999999999999999999999999999999999999999999764 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHc
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQ 462 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~ 462 (565)
|+++ .++.+++.|....
T Consensus 101 P~~~-------~~~~~l~~~~~kl 117 (356)
T PLN03088 101 PGDS-------RFTKLIKECDEKI 117 (356)
T ss_pred CCCH-------HHHHHHHHHHHHH
Confidence 6654 2455566665444
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=1.2e-05 Score=73.98 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+...+..+......++.+++...+++.++.+|+. ..+.+.+|.++...|++++|++.|+++++. .| ++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~----d~ 81 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----AP----DP 81 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CC----CH
Confidence 4567778888888999999999999999999999 778899999999999999999999999753 12 22
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.....+...++.++..+|++++|+..++.
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33345788899999999999999999977
No 108
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=5.7e-05 Score=81.55 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
...+...|..+.+.|++++|..+++++.+..|++. .+....+.++.+.|++++|.+.+++.++. +|+++
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~----- 187 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK----- 187 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 44455667777888888888888888888888875 46666688888888888888888888543 45543
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.++..++.++...|++++|++.+++.
T Consensus 188 --~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 188 --EVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666888888888888888888883
No 109
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=1.1e-05 Score=73.44 Aligned_cols=91 Identities=26% Similarity=0.349 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
...++.+++..|...++.|++++|++.|+......|.. ..|...+|.+|+..|++++|+..+++-|++ +|++
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h 80 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH 80 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence 35689999999999999999999999999999999875 679999999999999999999999999765 5876
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCC
Q 008435 442 PEAIDLLIVASQWSGVACIRQEK 464 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~ 464 (565)
+. .+ .+++..|.++..+.+
T Consensus 81 p~-vd---Ya~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 81 PN-VD---YAYYMRGLSYYEQDE 99 (142)
T ss_pred CC-cc---HHHHHHHHHHHHHhh
Confidence 62 22 468889999888765
No 110
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.29 E-value=2.8e-06 Score=86.37 Aligned_cols=102 Identities=21% Similarity=0.095 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
++-++|..++.+|+|+||++||.+++..+|.|+..+.+.+..|.+..+|+.|+.-.+.|+.++ .....
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------------~~Y~K 166 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------------KLYVK 166 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------------HHHHH
Confidence 456789999999999999999999999999999999999999999999999999999998653 33446
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
||-..|.+...+|+..||.+-+|+ +++++|++-.
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~-vL~LEP~~~E 200 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCET-VLALEPKNIE 200 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHH-HHhhCcccHH
Confidence 788899999999999999999999 7779998654
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=1.2e-05 Score=84.26 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL 408 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~ 408 (565)
+..+..|..+...|++++|.+.++++++.+|++..++..
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 334445555555556666666666666555555554443
No 112
>PRK11906 transcriptional regulator; Provisional
Probab=98.27 E-value=5.8e-06 Score=88.20 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCCCCHHHHHHHHHHHHHC---C------CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 363 SVENLTPKELIALSVKFLSK---G------DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~---g------~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
..++..+..++.+|..+... | +..+|.++.++|+++||+|+.|+..+|.+....++++.|...|+||+.
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~-- 366 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI-- 366 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--
Confidence 45556688888888877653 2 344689999999999999999999999999999999999999999954
Q ss_pred hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
++|+.+ .+++..|..+...|+.++|++++++ +.+++|....
T Consensus 367 ---L~Pn~A-------~~~~~~~~~~~~~G~~~~a~~~i~~-alrLsP~~~~ 407 (458)
T PRK11906 367 ---HSTDIA-------SLYYYRALVHFHNEKIEEARICIDK-SLQLEPRRRK 407 (458)
T ss_pred ---cCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HhccCchhhH
Confidence 467654 4788899999999999999999999 7788887653
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.27 E-value=9.1e-06 Score=76.42 Aligned_cols=119 Identities=19% Similarity=0.101 Sum_probs=75.9
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhh--hhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLL---EEAVEYLECAISKL--FLAGHPTEPEAIDLLIVASQWSGVACI 460 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~---~eA~~~~~rAl~l~--~l~~~P~~~~~~~~~~~a~~~lG~a~~ 460 (565)
+.|.+.++.....||.|+++++.-|.++..+.++ .|+.+.++.|+++. .+..+|+.. .+++.+|++|.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h-------dAlw~lGnA~t 80 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH-------DALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH-------HHHHHHHHHHH
Confidence 4678889999999999999999999998877544 55666666666654 244566533 46778899885
Q ss_pred Hc----CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhh
Q 008435 461 RQ----EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFATSPSIINLLTVSNIIDIIYVNCYELK 536 (565)
Q Consensus 461 ~~----g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~ 536 (565)
.+ .+..+|.++|++ +. ++|++|+..+|++..+.+.++-.....+.+.+..
T Consensus 81 s~A~l~~d~~~A~~~F~k-A~-------------------------~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~ 134 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEK-AT-------------------------EYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIH 134 (186)
T ss_dssp HHHHH---HHHHHHHHHH-HH-------------------------HHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHH-HH-------------------------HHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHH
Confidence 53 344556666666 22 4467777777777777776665555555444443
Q ss_pred h
Q 008435 537 K 537 (565)
Q Consensus 537 ~ 537 (565)
+
T Consensus 135 ~ 135 (186)
T PF06552_consen 135 K 135 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.26 E-value=7.1e-06 Score=77.65 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (565)
Q Consensus 399 dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~ 478 (565)
++..+.+++.+|..+...|++++|+++|+++++.. |+.. ....++..+|.++...|++++|++++++ +..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~ 100 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPN----DRSYILYNMGIIYASNGEHDKALEYYHQ-ALE 100 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccc----hHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence 45678889999999999999999999999997642 2211 1124678899999999999999999999 666
Q ss_pred cCCCCchh
Q 008435 479 KEPEEPKS 486 (565)
Q Consensus 479 l~P~~~~~ 486 (565)
..|+++..
T Consensus 101 ~~p~~~~~ 108 (172)
T PRK02603 101 LNPKQPSA 108 (172)
T ss_pred hCcccHHH
Confidence 77777643
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=4.8e-05 Score=77.64 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=115.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
-..+..++.+-..+|..|..++..|+-.-|+.-+.+.|++.|++..|....|.++..+|++++|+.-|.+.+.. +
T Consensus 62 HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~-----~ 136 (504)
T KOG0624|consen 62 HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH-----E 136 (504)
T ss_pred HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc-----C
Confidence 34566667777889999999999999999999999999999999999999999999999999999999999654 3
Q ss_pred CCChhhh--------------------------------h---HH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 439 PTEPEAI--------------------------------D---LL-------IVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 439 P~~~~~~--------------------------------~---~~-------~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
|.+.... + .. ..-+...+.||...|+...||.-++. +
T Consensus 137 ~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~-a 215 (504)
T KOG0624|consen 137 PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ-A 215 (504)
T ss_pred CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH-H
Confidence 3211000 0 00 00123367788899999999999988 5
Q ss_pred hccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435 477 NLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL 518 (565)
Q Consensus 477 ~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~ 518 (565)
..+..++..........++.+|... ....+..+++||+++.+
T Consensus 216 skLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 216 SKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 5566566654333333444455444 78889999999997653
No 116
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.24 E-value=2.1e-05 Score=84.93 Aligned_cols=184 Identities=8% Similarity=-0.078 Sum_probs=120.8
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh---------
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------- 442 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~--------- 442 (565)
....+..+.+.|++++|...+++.++.+|+++.++..+|.++.+.|++++|++.+++..+.. ..++.+.
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEI 233 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 44458889999999999999999999999999999999999999999999999999887541 0011000
Q ss_pred -------------------h-hhh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH-
Q 008435 443 -------------------E-AID---LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA- 498 (565)
Q Consensus 443 -------------------~-~~~---~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La- 498 (565)
+ .+. .....+..++..+...|++++|.+.+++ +....|++.............+.
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~-~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFD-GLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHH-HHhhCCCcccchhHHHHHhhhcCC
Confidence 0 000 0123456688899999999999999999 66677877632100111111110
Q ss_pred ---HHHHHHHHHHHhcCCCcH--HHHHhhhh-------hhHHHhhhhh--hh---hhhhhhhhccchhHHHHHHHHHhh
Q 008435 499 ---RYVANITFLIFATSPSII--NLLTVSNI-------IDIIYVNCYE--LK---KKRFASCFFGFSVLYVMLVAMLKL 560 (565)
Q Consensus 499 ---~~l~~~l~~Al~l~P~~~--~~l~~~~~-------~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~ 560 (565)
....+.++++++.+|+.. .++..... .+.+.+ +.+ .. .+..+. +..+|.++..+|+-.+-
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~-~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD-AFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH-HHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 111788899999999888 54433222 222211 222 11 122333 55888888887765443
No 117
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.24 E-value=1.5e-06 Score=68.63 Aligned_cols=54 Identities=39% Similarity=0.607 Sum_probs=49.9
Q ss_pred HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+++.|++++|+..|+++++.+|++.++++.+|.++.+.|++++|.+.+++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999653
No 118
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.23 E-value=4.3e-05 Score=86.78 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=108.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435 359 QLKISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l 435 (565)
.|.+..+|.+...++.+|...+... .+..+..++.+|-..+|+|+.+...|+.-++..|+|+.+...++.|+...
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-- 300 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-- 300 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--
Confidence 4555566677888888888776544 56678999999999999999999999999999999999999999886531
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITF 506 (565)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~ 506 (565)
.......+.+||+|.+|..+|+|++|..+|.+ +...+|++. ...++.+|+.+ ..+++
T Consensus 301 -------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~-s~k~~~d~~------~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 301 -------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYME-SLKADNDNF------VLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred -------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH-HHccCCCCc------cccccchhHHHHHhchHHHHHHHHH
Confidence 11223345788999999999999999999988 555565551 12233555554 78899
Q ss_pred HHHhcCCCcHHHH
Q 008435 507 LIFATSPSIINLL 519 (565)
Q Consensus 507 ~Al~l~P~~~~~l 519 (565)
+.+..+|+.-+.+
T Consensus 367 kv~k~~p~~~etm 379 (1018)
T KOG2002|consen 367 KVLKQLPNNYETM 379 (1018)
T ss_pred HHHHhCcchHHHH
Confidence 9999999876544
No 119
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.22 E-value=1.6e-05 Score=85.55 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=96.1
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh----------
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE---------- 443 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~---------- 443 (565)
..+..+...|++++|++.++++++.+|+++.++..++.+|.+.|++++|++.+.+..+.. ..++.+..
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--VGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence 458888999999999999999999999999999999999999999999998888776432 00110000
Q ss_pred ----------------------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH
Q 008435 444 ----------------------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV 501 (565)
Q Consensus 444 ----------------------~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l 501 (565)
.......++..++..+...|+.++|.+.+++ +...+ .|+.....| +.+..+...
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~-~l~~~-~~~~l~~l~--~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD-GLKRQ-YDERLVLLI--PRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcC-CCHHHHHHH--hhccCCChH
Confidence 0000112455678889999999999999999 44333 344221111 100111111
Q ss_pred --HHHHHHHHhcCCCcHHHH
Q 008435 502 --ANITFLIFATSPSIINLL 519 (565)
Q Consensus 502 --~~~l~~Al~l~P~~~~~l 519 (565)
.+.+++.++.+|+..+.+
T Consensus 312 ~al~~~e~~lk~~P~~~~l~ 331 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLW 331 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHH
Confidence 677888888888876644
No 120
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=2.1e-05 Score=68.34 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
+++++.+|..+...|++++|++.|+++++. +|+++ ....+++.+|.++...|++++|+..|++ +...+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLA-VVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHH-HHHHCCC
Confidence 468899999999999999999999999754 34322 1124678899999999999999999999 6667777
Q ss_pred CchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435 483 EPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL 518 (565)
Q Consensus 483 ~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~ 518 (565)
++... .++..+|..+ .++++++++..|+....
T Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 72 SPKAP----DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred CCccc----HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 64221 1222344333 78888888888886654
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8.8e-06 Score=87.21 Aligned_cols=107 Identities=22% Similarity=0.183 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++++-+.|...++.|+++.|+.+|..|+.+||.|.--|-+...+|...|+|++|++-..+.+++ +|+ +
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-----~p~---w---- 69 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-----NPD---W---- 69 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-----CCc---h----
Confidence 4567789999999999999999999999999999999999999999999999999999999764 343 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
..+|...|.++.-+|+|++|+..|++ .+..+|.+.....
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~-GL~~d~~n~~L~~ 108 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSE-GLEKDPSNKQLKT 108 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHH-HhhcCCchHHHHH
Confidence 24677799999999999999999999 6668888875433
No 122
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=8.9e-06 Score=82.40 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++.+..++..+.+-++.+.|+..+.+.++..|.++.-+..++.++...++.++|.++|++++++ +|.+.|
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-----~~~nvE----- 325 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-----HPINVE----- 325 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-----CCccce-----
Confidence 6778888999999999999999999999999999999999999999999999999999999553 465443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----HHHHHHHHhcC--CCc-HHHHHh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----ANITFLIFATS--PSI-INLLTV 521 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----~~~l~~Al~l~--P~~-~~~l~~ 521 (565)
+..-+|.-|+.-|+.|-|..+|+| +....-.+|+. +...+++++.... ...+++|+..- |+. .+.|=+
T Consensus 326 --aiAcia~~yfY~~~PE~AlryYRR-iLqmG~~speL--f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 326 --AIACIAVGYFYDNNPEMALRYYRR-ILQMGAQSPEL--FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred --eeeeeeeccccCCChHHHHHHHHH-HHHhcCCChHH--HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 233467778899999999999999 55565566643 2222333222111 67888888754 332 234422
Q ss_pred h----------hhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHhhhhc
Q 008435 522 S----------NIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRSI 563 (565)
Q Consensus 522 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (565)
+ +.+..++..+.. -+..+.++|.||||+-...|+.+.-||.
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~-~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALT-SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhc-cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 2 222233333322 2366999999999999999988877764
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.17 E-value=3.8e-05 Score=82.63 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=77.5
Q ss_pred HHHHHHH-HHHHHHCCCCCchHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 369 PKELIAL-SVKFLSKGDKERPIPLLQLALNKEPDNINAL-ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 369 ~~~l~~l-A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~-~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
+..++.+ +....+.|++++|..++++|.+.+|++..+. ...+.++...|++++|++.++++++ .+|+++
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~---- 187 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE-----VAPRHP---- 187 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCCH----
Confidence 4444555 5555899999999999999999999996544 4459999999999999999999954 356655
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.++..++.+|...|++++|++.++++
T Consensus 188 ---~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 188 ---EVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35667899999999999999888873
No 124
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.17 E-value=8.7e-06 Score=90.29 Aligned_cols=133 Identities=18% Similarity=0.042 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
......|..+...++.++|.-++.+|-..+|..+..|+..|.++..+|+++||.++|.-|+ ..||++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-----~ldP~hv------- 718 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL-----ALDPDHV------- 718 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-----hcCCCCc-------
Confidence 3445566667778888889999999999999999999999999999999999999999994 4567654
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc
Q 008435 450 VASQWSGVACIRQEKWEEGIA--HLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI 515 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~--~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~ 515 (565)
.....+|.++.+.|+..-|.. .+.. +.+.+|.+++.|.+....+-.+|+.. .++|..+++++++.
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~d-alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSD-ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 123447888888888777766 7877 77789999976443333333444444 78889888887754
No 125
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.4e-05 Score=83.16 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++..+--+..+...+++++|+.+-+++|+.||++.+++...|.++.+.|+.++|+-+|+.|..+. |.+
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-----p~r------ 367 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-----PYR------ 367 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-----hhh------
Confidence 466677888888999999999999999999999999999999999999999999999999996542 322
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH-HHH----------HHHHHHHHhcCCCcH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA-RYV----------ANITFLIFATSPSII 516 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La-~~l----------~~~l~~Al~l~P~~~ 516 (565)
.+.|.++-.+|...|++.||...-.. +...-|++++.. ..+| .+. .++++++++++|.+.
T Consensus 368 -L~~Y~GL~hsYLA~~~~kEA~~~An~-~~~~~~~sA~~L-------tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 368 -LEIYRGLFHSYLAQKRFKEANALANW-TIRLFQNSARSL-------TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred -HHHHHHHHHHHHhhchHHHHHHHHHH-HHHHhhcchhhh-------hhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 24567777889999999999988877 444555665432 2333 111 688999999999987
Q ss_pred HHHHhhh
Q 008435 517 NLLTVSN 523 (565)
Q Consensus 517 ~~l~~~~ 523 (565)
.+.....
T Consensus 439 ~AV~~~A 445 (564)
T KOG1174|consen 439 PAVNLIA 445 (564)
T ss_pred HHHHHHH
Confidence 6554443
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=8.6e-06 Score=66.28 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
|+-+.++..+|.+|...|++++|+++|++++++. -...+ +......++.++|.++..+|++++|+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3446789999999999999999999999998763 11111 122234578899999999999999999999943
No 127
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.15 E-value=7.6e-06 Score=87.20 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=61.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+|+++.+|+++|.+|...|++++|+.+|++|+++ +|++++. ..+|+++|.+|..+|++++|+++|+++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA----~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEA----QAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999764 5764411 13589999999999999999999999444
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.14 E-value=1.2e-05 Score=91.19 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=45.0
Q ss_pred HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~ 460 (565)
+.+.+++|+++|.++|+.||.|..|-..+|.++...|++.+|.+.|.++.+.. .....+|.++|.||.
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~------------~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT------------SDFEDVWLNLAHCYV 691 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH------------hhCCceeeeHHHHHH
Confidence 34455556666666666666666666666666666666666666666553321 001123445555555
Q ss_pred HcCCHHHHHHHHHHH
Q 008435 461 RQEKWEEGIAHLERI 475 (565)
Q Consensus 461 ~~g~~~eAi~~lera 475 (565)
.+|+|-.|++.|+..
T Consensus 692 e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555553
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.14 E-value=1.2e-05 Score=89.19 Aligned_cols=112 Identities=11% Similarity=-0.049 Sum_probs=87.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCC--------CCCchHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 360 LKISVENLTPKELIALSVKFLSKG--------DKERPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g--------~~~eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
+.+..+|.++..+..++..+.... +.+++.+..++++. .+|.++.+|..+|..+...|++++|..++++|
T Consensus 367 ~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA 446 (517)
T PRK10153 367 EILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA 446 (517)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455555666777777776664432 22345566666666 38999999999999999999999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+++ +|. ..+|..+|.++...|++++|++.|++ +.+++|.+|.
T Consensus 447 l~L-----~ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~-A~~L~P~~pt 488 (517)
T PRK10153 447 IDL-----EMS--------WLNYVLLGKVYELKGDNRLAADAYST-AFNLRPGENT 488 (517)
T ss_pred HHc-----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCch
Confidence 764 332 24788899999999999999999999 7889999985
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.14 E-value=4.6e-06 Score=66.85 Aligned_cols=57 Identities=30% Similarity=0.394 Sum_probs=54.1
Q ss_pred HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
...+.+.+++++|+..++++++.+|+++.+|..+|.++...|++++|.+.++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999765
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.4e-05 Score=79.06 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH---cCCH
Q 008435 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR---QEKW 465 (565)
Q Consensus 389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~---~g~~ 465 (565)
+.-++.-|+.||+|++-|..||.+|+..|+++.|...|++|+++ .|+++ ..+..+|.++.. ...-
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~-------~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNP-------EILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHhcCCccc
Confidence 45566779999999999999999999999999999999999765 46655 234446666543 3446
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435 466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI 524 (565)
Q Consensus 466 ~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~ 524 (565)
.++.+.|++ +..++|.|......+......-++.- +..++..++..|....-..-+++
T Consensus 210 a~a~~ll~~-al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 210 AKARALLRQ-ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHH-HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 789999999 77799998865332211111111111 77888999998876554444443
No 132
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=3.5e-05 Score=61.84 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+++.+|.++...|++++|++.++++++. .|.+. .++..+|.++...|++++|++.+++ +....|.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEK-ALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCcch
Confidence 6789999999999999999999999653 34322 4577899999999999999999999 655777776
Q ss_pred hhhhhhhhHHHHHHHHH--HHHHHHHHhcCC
Q 008435 485 KSKAHYYDGLVVLARYV--ANITFLIFATSP 513 (565)
Q Consensus 485 ~~~~~~~~~~~~La~~l--~~~l~~Al~l~P 513 (565)
.........+...+... .+.++++++.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 43222211221222211 556666666665
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=7.4e-05 Score=70.27 Aligned_cols=95 Identities=11% Similarity=-0.031 Sum_probs=74.2
Q ss_pred CCCCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435 382 KGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~ 459 (565)
.+++..+.+.+.+.++.++.+ +.+|+.+|.++...|++++|+.+|++|+.+. |+. .....++.++|.++
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~----~~~~~~~~~lg~~~ 82 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDP----YDRSYILYNIGLIH 82 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccc----hhhHHHHHHHHHHH
Confidence 345667777776666777766 7778999999999999999999999997642 221 11224788999999
Q ss_pred HHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 460 IRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 460 ~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
...|++++|++.+++ +...+|.+...
T Consensus 83 ~~~g~~~eA~~~~~~-Al~~~~~~~~~ 108 (168)
T CHL00033 83 TSNGEHTKALEYYFQ-ALERNPFLPQA 108 (168)
T ss_pred HHcCCHHHHHHHHHH-HHHhCcCcHHH
Confidence 999999999999999 66677777644
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.5e-05 Score=83.10 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------------ALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~------------A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+..+.+.++..|..++-.++.+.|+.+|+++|.+||++-. .+-.-|+-.++.|++.+|.++|..||.
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~- 277 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN- 277 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc-
Confidence 3456888999999999999999999999999999999854 577788889999999999999999965
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHh
Q 008435 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFA 510 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~ 510 (565)
.+|++. .....-|.+.+.+..++|+..||+.-.+. +..++|..-+.......+...+...- ++.++++++
T Consensus 278 ----idP~n~---~~naklY~nra~v~~rLgrl~eaisdc~~-Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 278 ----IDPSNK---KTNAKLYGNRALVNIRLGRLREAISDCNE-ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ----CCcccc---chhHHHHHHhHhhhcccCCchhhhhhhhh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457643 22334577788889999999999999999 55566554433222222222222222 677888887
Q ss_pred cCCC
Q 008435 511 TSPS 514 (565)
Q Consensus 511 l~P~ 514 (565)
..-+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 7654
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=4.2e-05 Score=88.51 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=99.6
Q ss_pred chhhhcCCCCCCC---HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 356 PAKQLKISVENLT---PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 356 ~~~~~~~~~~~~~---~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.++..|....|.+ .+++.+++..+...+++++|+..++.+++..|+...+|+.+|.++.+.+++++|.-. +++..
T Consensus 15 ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 15 EEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 3455565555554 467788888888999999999999999999999999999999999999999888776 66543
Q ss_pred hhhcCCCCChhhhhH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhh
Q 008435 433 LFLAGHPTEPEAIDL----------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY 490 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~----------~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~ 490 (565)
. ..+. +...... ...|++.+|.||.++|+.++|.+.|++ +...+|+|+.+..+|
T Consensus 93 ~--~~~~-~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer-~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 93 F--SQNL-KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER-LVKADRDNPEIVKKL 156 (906)
T ss_pred c--cccc-chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH-HHhcCcccHHHHHHH
Confidence 2 1111 0111111 124888999999999999999999999 777899999766544
No 136
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00011 Score=76.79 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=113.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL------- 433 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~------- 433 (565)
.|+.++-+.+.+...|..+.+.|+.++|+-.|+.|..+.|..-+.|-.|=.+|...|++.||....+.+++..
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 4555666788999999999999999999999999999999999999999999999999999999888887653
Q ss_pred hhc------CCCCChhhh-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH
Q 008435 434 FLA------GHPTEPEAI-----------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496 (565)
Q Consensus 434 ~l~------~~P~~~~~~-----------~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~ 496 (565)
.+. .+|.--+.. +....|...++..+...|++++++..+++ .....|++. .+. -
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~-~L~~~~D~~-LH~-------~ 476 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK-HLIIFPDVN-LHN-------H 476 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH-HHhhccccH-HHH-------H
Confidence 011 112100000 01112445578888999999999999999 443444432 122 3
Q ss_pred HHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435 497 LARYV---------ANITFLIFATSPSIINLLTVSN 523 (565)
Q Consensus 497 La~~l---------~~~l~~Al~l~P~~~~~l~~~~ 523 (565)
||+++ .++|..|+++||+....+++..
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34333 7899999999999887665553
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.04 E-value=4.5e-05 Score=86.65 Aligned_cols=165 Identities=10% Similarity=-0.053 Sum_probs=102.6
Q ss_pred CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh----------------
Q 008435 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI---------------- 445 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~---------------- 445 (565)
+++.+.|...|-+++++|++.+.+|..||.+|..--+...|..+|++|-+ +|+.+++..
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-----LDatdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-----LDATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchhhhhHHHHHHHhhccccHHHH
Confidence 34566666666777777777777777777776666666667777777633 333322110
Q ss_pred -------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HH
Q 008435 446 -------------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------AN 503 (565)
Q Consensus 446 -------------~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~ 503 (565)
..-...|..+|..|.+.+++..|+.+|+. +.+.+|.|-..+. .+|..| .+
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-ALR~dPkD~n~W~-------gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-ALRTDPKDYNLWL-------GLGEAYPESGRYSHALK 617 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-HhcCCchhHHHHH-------HHHHHHHhcCceehHHH
Confidence 00011344588899999999999999998 7778888765433 666666 78
Q ss_pred HHHHHHhcCCCcHH-----H--HHhhhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435 504 ITFLIFATSPSIIN-----L--LTVSNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 504 ~l~~Al~l~P~~~~-----~--l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
.+.+|..++|...- + .....+...+++...... +.-+.-+-.|++.++.|.....-
T Consensus 618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~ 682 (1238)
T KOG1127|consen 618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSA 682 (1238)
T ss_pred hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999997432 1 122233434444332221 22255677788888877655443
No 138
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.02 E-value=5.1e-06 Score=56.94 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008435 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424 (565)
Q Consensus 391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~ 424 (565)
+|++||+++|+|+.+|+.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4799999999999999999999999999999963
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.00 E-value=9.7e-05 Score=74.95 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435 400 PDNINALILMGQTQ-LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (565)
Q Consensus 400 P~~a~A~~~LG~~~-~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~ 478 (565)
..+...+|..|..+ ...|++++|+..|++.++. .|++. ....+++|+|.+|+..|++++|+..|++ +..
T Consensus 139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~-vv~ 208 (263)
T PRK10803 139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDST----YQPNANYWLGQLNYNKGKKDDAAYYFAS-VVK 208 (263)
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence 33567778888876 5679999999999999765 35432 2235899999999999999999999999 555
Q ss_pred cCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435 479 KEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 479 l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l 519 (565)
..|+++.. .+++..+|.++ .+.|++.++..|+...+-
T Consensus 209 ~yP~s~~~----~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 209 NYPKSPKA----ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HCCCCcch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 77887743 33444555544 788888888888866543
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00022 Score=70.40 Aligned_cols=113 Identities=18% Similarity=0.065 Sum_probs=87.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+..++++...+-..-.....+|+.-+|++.+...++..++|.+||..++.+|...|+|+.|.-||++.+ ..+
T Consensus 110 ~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-----l~~ 184 (289)
T KOG3060|consen 110 ESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-----LIQ 184 (289)
T ss_pred HHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-----HcC
Confidence 445555566666666666667788999999999999999999999999999999999999999999999994 457
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhccCCCCc
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g---~~~eAi~~leraa~~l~P~~~ 484 (565)
|.++. -+..+|..++-+| +++-|.++|++ +..++|.+-
T Consensus 185 P~n~l-------~f~rlae~~Yt~gg~eN~~~arkyy~~-alkl~~~~~ 225 (289)
T KOG3060|consen 185 PFNPL-------YFQRLAEVLYTQGGAENLELARKYYER-ALKLNPKNL 225 (289)
T ss_pred CCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhChHhH
Confidence 77652 2333555554444 56779999999 666777554
No 141
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00012 Score=76.76 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l 435 (565)
..-+.|..+++.|++..|...|++|+..=... ..+|.+++.++...++|.+|+++..+++++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 34567888999999999999999998743311 347899999999999999999999999654
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
+|+|. .|+|..|.++..+|+|+.|+..|++ +..++|+|..+..
T Consensus 287 --~~~N~-------KALyRrG~A~l~~~e~~~A~~df~k-a~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 287 --DPNNV-------KALYRRGQALLALGEYDLARDDFQK-ALKLEPSNKAARA 329 (397)
T ss_pred --CCCch-------hHHHHHHHHHHhhccHHHHHHHHHH-HHHhCCCcHHHHH
Confidence 56654 5788899999999999999999999 7779999975543
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=6.7e-05 Score=72.33 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+.-+++.|..+-+.|-.+-|.--|.++|.+.|+-+++++.+|.-+...|+++.|.+.|...++ +||.+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-----LDp~y~------ 133 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-----LDPTYN------ 133 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-----cCCcch------
Confidence 455788888888888888899999999999999999999999999999999999999999955 456532
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++.+.|.++..-|++.-|.+-+.+ --+.+|+||-.
T Consensus 134 -Ya~lNRgi~~YY~gR~~LAq~d~~~-fYQ~D~~DPfR 169 (297)
T COG4785 134 -YAHLNRGIALYYGGRYKLAQDDLLA-FYQDDPNDPFR 169 (297)
T ss_pred -HHHhccceeeeecCchHhhHHHHHH-HHhcCCCChHH
Confidence 4677899999999999999999988 44578999854
No 143
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.92 E-value=0.00013 Score=79.82 Aligned_cols=65 Identities=23% Similarity=0.153 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
++..++.-+...-..++.++|+++++++|+..|++...|..+|+++.+.++.+.|.+.|...+++
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 45667777777777899999999999999999999999999999999999999999999998765
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00012 Score=76.43 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=104.8
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh-----H
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID-----L 447 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~-----~ 447 (565)
+..+..+...|++++|+..--..+++|+.+.++++..|.+++..++.+.|+.+|++++. .+|+..+.-. .
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPK 247 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHH
Confidence 34566677789999999999999999999999999999999999999999999999965 4564221110 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL 518 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~ 518 (565)
....+-.-|+-.++.|++.+|.+.|.. ++..+|++.+..... +.+.+.+. +.--+.++.+||.+..+
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yte-al~idP~n~~~nakl---Y~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTE-ALNIDPSNKKTNAKL---YGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHH-hhcCCccccchhHHH---HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 112444578888999999999999999 777899887653322 22333333 56668899999987654
Q ss_pred H
Q 008435 519 L 519 (565)
Q Consensus 519 l 519 (565)
+
T Consensus 324 l 324 (486)
T KOG0550|consen 324 L 324 (486)
T ss_pred H
Confidence 4
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.00066 Score=72.52 Aligned_cols=167 Identities=16% Similarity=0.043 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
+..+..+.......-+.........+...+|....++|..+..+++.|++++|+..++..++. .|+|+
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~------- 340 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNP------- 340 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCH-------
Confidence 334444444433333333333334444555899999999999999999999999999997543 56654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhH
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDI 527 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~ 527 (565)
......+.++...|+.++|.+.+++ +..+.|+.+.....|.+++...+..- +..+++.+.-+|++...|.-..+..+
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~k-al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKK-ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 1123478999999999999999999 77788888755444444433333332 78888999999998888877766655
Q ss_pred HHhhhhhhhhhhhhhhhccchhH
Q 008435 528 IYVNCYELKKKRFASCFFGFSVL 550 (565)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~ 550 (565)
...+..++... ++|.|+--|..
T Consensus 420 ~~g~~~~a~~A-~AE~~~~~G~~ 441 (484)
T COG4783 420 ELGNRAEALLA-RAEGYALAGRL 441 (484)
T ss_pred HhCchHHHHHH-HHHHHHhCCCH
Confidence 55555554444 56666666654
No 146
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.90 E-value=1.5e-05 Score=64.80 Aligned_cols=64 Identities=27% Similarity=0.369 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+..+..+|..+...|++++|+++|++++++. |+-+.++..+|.++...|++++|+++|++|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668899999999999999999999999752 233779999999999999999999999999764
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.90 E-value=0.00017 Score=83.72 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-.+++.+|..|-+.|+.++|...++++|+.||+|+.+...+|+.|... +.++|++++.+|+..
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999 999999999999764
No 148
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.89 E-value=0.00016 Score=79.11 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
..++..+...++.++|.+.++..++.|..+|++.+.+...|..+...|+-+||.++-+.+++ .|+...
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-----~d~~S~------- 75 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-----NDLKSH------- 75 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-----cCcccc-------
Confidence 46788999999999999999999999999999999999999999999999999999999954 333322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~ 522 (565)
..|..+|..+....+|+||++.|+. |...+|+|-............++..- .+.-.+.++++|+....|-..
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~n-Al~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRN-ALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 3466699999999999999999999 77788888765332211111111111 555567788888876655443
No 149
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.88 E-value=0.00015 Score=80.76 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhhhcCCCCChh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~--~~~rAl~l~~l~~~P~~~~ 443 (565)
+.++..++..|..+..+|+.+||...|..|+.+||+++.....+|.++.+.|+..-|.. ....|++ .||.++
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~- 754 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR-----LDPLNH- 754 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCH-
Confidence 44567789999999999999999999999999999999999999999999998877777 8888854 457655
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
.+|+++|.++..+|+.++|.+.|+- +.++++.+|.
T Consensus 755 ------eaW~~LG~v~k~~Gd~~~Aaecf~a-a~qLe~S~PV 789 (799)
T KOG4162|consen 755 ------EAWYYLGEVFKKLGDSKQAAECFQA-ALQLEESNPV 789 (799)
T ss_pred ------HHHHHHHHHHHHccchHHHHHHHHH-HHhhccCCCc
Confidence 6899999999999999999999998 6678877773
No 150
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.0001 Score=65.78 Aligned_cols=72 Identities=18% Similarity=0.056 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
++++|.+|.++...|+.++|+.+|++|++.. .. .+....++..+|.++..+|++|+|+..+++ .....|+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~----~~~~~~a~i~lastlr~LG~~deA~~~L~~-~~~~~p~ 70 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAG-----LS----GADRRRALIQLASTLRNLGRYDEALALLEE-ALEEFPD 70 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCC
Confidence 3688999999999999999999999997632 21 122235788899999999999999999999 5555677
Q ss_pred Cc
Q 008435 483 EP 484 (565)
Q Consensus 483 ~~ 484 (565)
++
T Consensus 71 ~~ 72 (120)
T PF12688_consen 71 DE 72 (120)
T ss_pred cc
Confidence 43
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=7.9e-05 Score=76.40 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--PDN----INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--P~~----a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+...+..+...+..++.++|+.++++|+++. -++ +.++..+|.+|... |++++|+++|++|++.....+.
T Consensus 74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--- 150 (282)
T PF14938_consen 74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--- 150 (282)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---
Confidence 3344566666677779999999999999863 222 67899999999999 9999999999999876311111
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--CCCC-chhhhhhhh-HHHHHHH--HH--HHHHHHHHhcCC
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK--EPEE-PKSKAHYYD-GLVVLAR--YV--ANITFLIFATSP 513 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l--~P~~-~~~~~~~~~-~~~~La~--~l--~~~l~~Al~l~P 513 (565)
.......+..+|.++.+.|+|++|++.|++++... ++.. .....++.. +++.|.. .. .+.+++....+|
T Consensus 151 ---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 151 ---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred ---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11122356678999999999999999999955421 1111 111122211 1122221 11 677788888888
Q ss_pred CcH
Q 008435 514 SII 516 (565)
Q Consensus 514 ~~~ 516 (565)
++.
T Consensus 228 ~F~ 230 (282)
T PF14938_consen 228 SFA 230 (282)
T ss_dssp TST
T ss_pred CCC
Confidence 764
No 152
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.85 E-value=1.7e-05 Score=57.55 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~ 412 (565)
|+.++.+|..+.+.|++++|++.|+++++.+|+|+++|..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35688999999999999999999999999999999999999863
No 153
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.82 E-value=0.00038 Score=78.77 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=92.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
-|..+|..+..++.+|..+.++|+.+++....-.|-.++|++.+-|..++....++|++++|.-||.|||+. +|.
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~-----~p~ 239 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA-----NPS 239 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCc
Confidence 344456678899999999999999999999999999999999999999999999999999999999999765 465
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
+. .-.+.....|.+.|++.+|.+-|.+ +..++|
T Consensus 240 n~-------~~~~ers~L~~~~G~~~~Am~~f~~-l~~~~p 272 (895)
T KOG2076|consen 240 NW-------ELIYERSSLYQKTGDLKRAMETFLQ-LLQLDP 272 (895)
T ss_pred ch-------HHHHHHHHHHHHhChHHHHHHHHHH-HHhhCC
Confidence 43 1234567889999999999999999 555666
No 154
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00096 Score=68.01 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
|-.|..++-..+.++|+++|...++.||...+++..||.++...|..|.|+..-+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L 95 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTL 95 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 455666667777777777777777777777777777777777777777777655444
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00012 Score=78.23 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++..+.+|..+...++..+|++.++++++.+|+++..+...+..+...++++.|++..++|++.. |.+
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-----P~~------- 267 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-----PSE------- 267 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chh-------
Confidence 44566788888888888999999999999999999999999999999999999999999998753 432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
...|+.|+.+|...|++++|+..++.
T Consensus 268 f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 268 FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 35788999999999999999998887
No 156
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.81 E-value=5.6e-05 Score=60.43 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 409 LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
|..+|.+.+++++|++++++++++ +|+++ ..+...|.++..+|++++|++.|++ +...+|+++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~-~l~~~p~~~~~ 65 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL-----DPDDP-------ELWLQRARCLFQLGRYEEALEDLER-ALELSPDDPDA 65 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh-----Ccccc-------hhhHHHHHHHHHhccHHHHHHHHHH-HHHHCCCcHHH
Confidence 467899999999999999999764 46544 4577799999999999999999999 66788887754
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=6e-05 Score=59.36 Aligned_cols=60 Identities=30% Similarity=0.505 Sum_probs=48.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+...|++++|++.|+++++. +|++. .+++.+|.+|...|++++|.+.+++ +...+|+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~-----~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~-~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR-----NPDNP-------EARLLLAQCYLKQGQYDEAEELLER-LLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-----TTTSH-------HHHHHHHHHHHHTT-HHHHHHHHHC-CHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCHHH
Confidence 35789999999999999765 46544 4677899999999999999999999 7767777653
No 158
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.80 E-value=0.0005 Score=62.73 Aligned_cols=77 Identities=29% Similarity=0.246 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
.+..++.-|.-.++.|+|++|++.|+..... -|. .+....+...+|.+|+..|++++|++.+++ -.+++|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~----g~ya~qAqL~l~yayy~~~~y~~A~a~~~r-FirLhP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPF----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR-FIRLHP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCC----CcccHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCC
Confidence 4778999999999999999999999998543 232 122235788899999999999999999999 677999
Q ss_pred CCchhhh
Q 008435 482 EEPKSKA 488 (565)
Q Consensus 482 ~~~~~~~ 488 (565)
.++.+..
T Consensus 79 ~hp~vdY 85 (142)
T PF13512_consen 79 THPNVDY 85 (142)
T ss_pred CCCCccH
Confidence 9997644
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=97.78 E-value=0.0003 Score=65.65 Aligned_cols=139 Identities=9% Similarity=0.019 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
.+++.+.-...+..|. .++.+..+.++.-+..|..|.-+++.|++++|+..|+-..- .+|.++
T Consensus 9 ~~~~~~~i~~al~~G~------tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~------ 71 (165)
T PRK15331 9 EERVAEMIWDAVSEGA------TLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNP------ 71 (165)
T ss_pred HHHHHHHHHHHHHCCC------CHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcH------
Confidence 3444444444445543 34455678888899999999999999999999999977732 355543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIID 526 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~ 526 (565)
+-+.+||.|+..+|+|++|+..|.. +..++++||....+..+.+..++... .++|+.++. +|.+..+....+..-
T Consensus 72 -~Y~~GLaa~~Q~~k~y~~Ai~~Y~~-A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L 148 (165)
T PRK15331 72 -DYTMGLAAVCQLKKQFQKACDLYAV-AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYL 148 (165)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 2356789999999999999999999 55588899876554444444444333 677887777 677766655544433
Q ss_pred H
Q 008435 527 I 527 (565)
Q Consensus 527 ~ 527 (565)
+
T Consensus 149 ~ 149 (165)
T PRK15331 149 E 149 (165)
T ss_pred H
Confidence 3
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=2e-05 Score=65.27 Aligned_cols=61 Identities=33% Similarity=0.432 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
+...++.+|..+.+.|++++|+..+++ +..+|.+...++.+|.++.+.|+++||+++|++|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 455677789999999999999999999 9999999999999999999999999999999986
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.73 E-value=0.0013 Score=64.18 Aligned_cols=105 Identities=27% Similarity=0.255 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
..+++++..|..+++.|++++|++.|++.+... |.. +....+.+++|.++...|++++|+..+++ .....
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s----~~a~~A~l~la~a~y~~~~y~~A~~~~~~-fi~~y 72 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNS----PYAPQAQLMLAYAYYKQGDYEEAIAAYER-FIKLY 72 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHC
Confidence 357889999999999999999999999997652 432 22345788999999999999999999999 66689
Q ss_pred CCCchhhh-hhhhHHHHHHH---H---H---------HHHHHHHHhcCCCc
Q 008435 481 PEEPKSKA-HYYDGLVVLAR---Y---V---------ANITFLIFATSPSI 515 (565)
Q Consensus 481 P~~~~~~~-~~~~~~~~La~---~---l---------~~~l~~Al~l~P~~ 515 (565)
|+++.... .|..+...... . . ...++..+...|+.
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 99886533 22223222111 1 0 55677777777763
No 162
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.73 E-value=0.00091 Score=66.51 Aligned_cols=109 Identities=22% Similarity=0.257 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
.+..+++++..|...++.|++++|+..|++.....|.+ ..+...++.++++.+++++|+...++-+++ .|.+
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~ 104 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTH 104 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCC
Confidence 35578999999999999999999999999999999876 678999999999999999999999999665 4665
Q ss_pred hhhhhHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhccCCCC
Q 008435 442 PEAIDLLIVASQWSGVACIR--------QEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~--------~g~~~eAi~~leraa~~l~P~~ 483 (565)
+ +.+ .+++..|.++.. +..-.+|+..|+. ....-|+.
T Consensus 105 ~-n~d---Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~-~i~ryPnS 149 (254)
T COG4105 105 P-NAD---YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE-LVQRYPNS 149 (254)
T ss_pred C-Chh---HHHHHHHHHHhccCCccccCHHHHHHHHHHHHH-HHHHCCCC
Confidence 5 222 356677777643 2223456666666 34455554
No 163
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0005 Score=72.43 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=90.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
...+..+.--.+.++..|..+...|+.++|+++|-+.-.+--+++++++.++.+|....+..+|+++|.++.++.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli----- 588 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI----- 588 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----
Confidence 444443333368889999999999999999999999988888999999999999999999999999999996653
Q ss_pred CCChhhhh---------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 439 PTEPEAID---------------------------LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 439 P~~~~~~~---------------------------~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
|+||.-.. -..+...|+|..|....-+++|+.+||+ +....|+..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek-aaliqp~~~k 661 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK-AALIQPNQSK 661 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-HHhcCccHHH
Confidence 44432100 0112345788888888888888888888 4446666543
No 164
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.67 E-value=0.00013 Score=80.78 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+.+....|...++.++++++.++++..++++|-....|+.+|.++.+.++++.|.++|.+.+. ++|++.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt-----L~Pd~~------ 553 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-----LEPDNA------ 553 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-----cCCCch------
Confidence 333444555556678999999999999999999999999999999999999999999999954 456654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhc
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFAT 511 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l 511 (565)
.+|.++..+|.+.|+-.+|...+++ +..-|-++.+.+..|....+-.+..- .+.+.+.+.+
T Consensus 554 -eaWnNls~ayi~~~~k~ra~~~l~E-AlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 554 -EAWNNLSTAYIRLKKKKRAFRKLKE-ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred -hhhhhhhHHHHHHhhhHHHHHHHHH-HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5688888999999999999999988 44455566666665544333333322 4555555544
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.0013 Score=62.38 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~-~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...+.+|..+.+.|++.||..+|++++. +..+++..+..+++..+..+++.+|...+++..+ -+|..- .++
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e-----~~pa~r-~pd-- 161 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME-----YNPAFR-SPD-- 161 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh-----cCCccC-CCC--
Confidence 4567999999999999999999999998 8889999999999999999999999999999843 344321 112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhcCCCcH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFATSPSII 516 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l~P~~~ 516 (565)
.+..+|.++..+|++++|...|+. +..--|. +.....|..-+...|... .+..+.+.+-.|.+.
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~-a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEV-AISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHH-HHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 234478899999999999999999 4434433 233333433333333111 344455555555444
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.57 E-value=0.0021 Score=71.19 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
.+.++.+|..+...|++++|+.++++||+.+|..++.|...|.++-..|++++|.++++.|-++ |.. +...
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~---DRyi- 264 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLA---DRYI- 264 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Chh---hHHH-
Confidence 5778999999999999999999999999999999999999999999999999999999999543 222 2111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
....+..+.+.|+.++|.+.+....
T Consensus 265 ---NsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 265 ---NSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 1224556789999999999998843
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.0023 Score=64.25 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
.++..++..|.-+...|++++|++.|+++++. .|.. +....+.+++|.++.+.|++++|+..+++ .....
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s----~~a~~a~l~la~ayy~~~~y~~A~~~~e~-fi~~~ 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDR-FIRLN 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhC
Confidence 57888999999999999999999999999654 3432 33345678999999999999999999999 67799
Q ss_pred CCCchhhhhhh-hHHHH--HH-----HH-------------H--HHHHHHHHhcCCCc
Q 008435 481 PEEPKSKAHYY-DGLVV--LA-----RY-------------V--ANITFLIFATSPSI 515 (565)
Q Consensus 481 P~~~~~~~~~~-~~~~~--La-----~~-------------l--~~~l~~Al~l~P~~ 515 (565)
|+++.....++ .+... ++ .. . .+.+++.++.-|+.
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 99997654222 22211 11 00 0 46788889998974
No 168
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.54 E-value=8.4e-05 Score=77.46 Aligned_cols=108 Identities=15% Similarity=0.031 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cC
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL-KE 480 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~-l~ 480 (565)
..+++-.||+.|+-.|+|++|+.+-+.=+++. .. ..+......|+.++|+||..+|+++.|+++|++.... .+
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia---~e---fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA---QE---FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHH---HH---hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 35788999999999999999999877765542 00 1122233468899999999999999999999983221 01
Q ss_pred CCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435 481 PEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL 518 (565)
Q Consensus 481 P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~ 518 (565)
=.+...+. +.-+.||..+ .+-+++|+...-.+-.+
T Consensus 268 lg~r~vEA---QscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 268 LGNRTVEA---QSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred hcchhHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11211111 1223566666 66677777765544333
No 169
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.53 E-value=0.00094 Score=68.81 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g--~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.|........++..++.+.|.+.++.+-+.|.++.-.....+++....| ++.+|...|+...+. .+.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----~~~----- 199 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----FGS----- 199 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----S-------
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----cCC-----
Confidence 45666667778899999999999999999999999888888888888877 589999999997321 111
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----------HHHHHHHHhcCCCc
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----------ANITFLIFATSPSI 515 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----------~~~l~~Al~l~P~~ 515 (565)
.......++.|+..+|+++||.+.+++ +...+|+++.... ++..+. .+++.+.-..+|++
T Consensus 200 --t~~~lng~A~~~l~~~~~~eAe~~L~~-al~~~~~~~d~La-------Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 200 --TPKLLNGLAVCHLQLGHYEEAEELLEE-ALEKDPNDPDTLA-------NLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHH-HCCC-CCHHHHHH-------HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred --CHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHhccCCHHHHH-------HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 123456789999999999999999999 6678888875422 333221 56777777788887
Q ss_pred HHHH
Q 008435 516 INLL 519 (565)
Q Consensus 516 ~~~l 519 (565)
.-..
T Consensus 270 ~~~~ 273 (290)
T PF04733_consen 270 PLVK 273 (290)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6443
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.00094 Score=66.94 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
.|..+.-++..|+|++|++.|..-++. -|+. ....+|+||||.+++.+|++++|...|.+ +....|+.++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~-~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFAR-VVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC----cccchhHHHHHHHHHhcccchHHHHHHHH-HHHhCCCCCC
Confidence 788888889999999999999999764 3432 23346899999999999999999999999 5557788876
Q ss_pred hhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHh
Q 008435 486 SKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTV 521 (565)
Q Consensus 486 ~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~ 521 (565)
.- +++.-+|.+. ...|++.++.-|+...+...
T Consensus 214 Ap----dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 214 AP----DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred Ch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 52 3444555544 57788888888887665443
No 171
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00025 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.+++.+-+.|..+....+|+.|+.+|-+||.++|..+.-|.+.+.+|++..+|+.+.+--++|+++ +|+
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-----~~N----- 76 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-----DPN----- 76 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----ChH-----
Confidence 4467788889999999999999999999999999999999999999999999999999999999754 232
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
...+++.+|.+......|++|+..+.++
T Consensus 77 --~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 77 --LVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred --HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 2367899999999999999999999994
No 172
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.47 E-value=0.0011 Score=71.12 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=71.9
Q ss_pred HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC------Ch-------hhhh
Q 008435 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT------EP-------EAID 446 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~------~~-------~~~~ 446 (565)
-++.+..+-+++-++||+++|++++||..|+.- ...-..||+++|+||++......... .. .+..
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 567788888999999999999999999998853 33457899999999987641111110 00 0111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
....+...++.|..++|+.+||++.++. ....+|.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rd-Llke~p~ 291 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRD-LLKEFPN 291 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHH-HHhhCCc
Confidence 2233566799999999999999999999 4445554
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.45 E-value=0.0009 Score=76.46 Aligned_cols=111 Identities=14% Similarity=-0.030 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----GLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-----g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
..+-...........+.++.-++.++++++-+-+..++..+..+... .+.+.|..+|-++++++ +.
T Consensus 420 ~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld-----~~---- 490 (1238)
T KOG1127|consen 420 ITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLD-----VS---- 490 (1238)
T ss_pred HHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-----cc----
Confidence 44444455556667788888888888888888777776666665433 35788999999997652 32
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~ 493 (565)
+..++..+|.+|+.--+.-.|.+.|++ +-.+++.+........+.
T Consensus 491 ---~apaf~~LG~iYrd~~Dm~RA~kCf~K-AFeLDatdaeaaaa~adt 535 (1238)
T KOG1127|consen 491 ---LAPAFAFLGQIYRDSDDMKRAKKCFDK-AFELDATDAEAAAASADT 535 (1238)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhhhhHHHHHHH
Confidence 224677799999988899999999999 777888887654444333
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0011 Score=63.41 Aligned_cols=99 Identities=22% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-----ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~-----A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
+-..|..++..|+|++|..-|+.||+..|.... .|.+.|.+.+.+++++.|++...+||++ +|.+.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~---- 168 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYE---- 168 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhH----
Confidence 445677777888888888888888888887643 5666777778888888888888888664 34322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
.|....+.+|.+..+|++|++-|++ +...+|..
T Consensus 169 ---kAl~RRAeayek~ek~eealeDyKk-i~E~dPs~ 201 (271)
T KOG4234|consen 169 ---KALERRAEAYEKMEKYEEALEDYKK-ILESDPSR 201 (271)
T ss_pred ---HHHHHHHHHHHhhhhHHHHHHHHHH-HHHhCcch
Confidence 3445567788888888888888888 55455543
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.41 E-value=0.0012 Score=72.57 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh----
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA---- 444 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~---- 444 (565)
.+.+-..|..+...|+.++|..+.+.+++.|+.+.-.|+.+|.++....+|+||+.||+.|+.. +|+|.+.
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN~qilrDl 115 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDNLQILRDL 115 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCcHHHHHHH
Confidence 3445556666666666666766667777766666667777776666666677777777666443 2332210
Q ss_pred -----------------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 445 -----------------------IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 445 -----------------------~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
.+.....|...++++...|++..|.+.++......
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00111135557778889999999999888744433
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.00081 Score=70.31 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
-.++...|..+++.|+.+..+.+|+.|++.--++. -+|-.||+.|+..++|++|+++-..=+.+..+.++.- -
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-G-- 93 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-G-- 93 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-c--
Confidence 45677889999999999999999999999998874 4788999999999999999997665543321222211 0
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---hccCCCCchhhhhhhhHHHHHHHHH
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIG---NLKEPEEPKSKAHYYDGLVVLARYV 501 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa---~~l~P~~~~~~~~~~~~~~~La~~l 501 (565)
+ ..+..++|+.+...|.|+||+...+|.+ .+++..-. -..+++++|.+|
T Consensus 94 -E--AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~-----e~RAlYNlgnvY 145 (639)
T KOG1130|consen 94 -E--AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL-----ESRALYNLGNVY 145 (639)
T ss_pred -c--ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh-----hhHHHhhhhhhh
Confidence 0 1234569999999999999998877622 22322211 234555777666
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.00068 Score=69.51 Aligned_cols=105 Identities=17% Similarity=0.060 Sum_probs=72.6
Q ss_pred CHHHHHH-HHHHHHHCCCCCchHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 368 TPKELIA-LSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 368 ~~~~l~~-lA~~l~~~g~~~eAi~~l~~AL~~dP------~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
++-++|. -|..+...|++++|..+|.+|.+..- .-+.++...|.++... ++++|+++|++|+++....+++
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~- 110 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF- 110 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH-
Confidence 3444555 45556678999999999999966431 2256777777777666 9999999999998864112222
Q ss_pred ChhhhhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcc
Q 008435 441 EPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLK 479 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l 479 (565)
......+..+|.+|... |++++|+++|++++...
T Consensus 111 -----~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 111 -----SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -----HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22234577799999998 99999999999966543
No 178
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.35 E-value=0.0031 Score=64.68 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
.-..|+-|+.+|+|+||++||.+++. .+|.++ ..+.+.+.+|.+++++..|..-.+. +..++..+.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~Np-------V~~~NRA~AYlk~K~FA~AE~DC~~-AiaLd~~Y~K 166 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNP-------VYHINRALAYLKQKSFAQAEEDCEA-AIALDKLYVK 166 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCc-------cchhhHHHHHHHHHHHHHHHHhHHH-HHHhhHHHHH
Confidence 46789999999999999999999964 457665 2355688999999999999999888 5545544433
Q ss_pred hhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHH
Q 008435 486 SKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDII 528 (565)
Q Consensus 486 ~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~ 528 (565)
+......+.-.||... .+-++.++++.|+..++.+...+...+
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL 211 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence 3222222333344333 677899999999988887777665543
No 179
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.32 E-value=0.002 Score=71.73 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
-+......|...|+..+|....++-++ .|+++..|-.+|.+.....-|++|.+.....- ..
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s------------------ar 486 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS------------------AR 486 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh------------------HH
Confidence 344555667778899999999999888 77788888888887665555555555444431 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
|...+|....+.++|+++..++++ ..++||-.... ||..+..++...- .++|.+.+.++|++.+.|.+..-.
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~-sl~~nplq~~~--wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLER-SLEINPLQLGT--WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHH-HhhcCccchhH--HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 444556656667888888888887 66677776644 3333322222111 677788888888887777666443
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.26 E-value=0.0045 Score=68.24 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
...-+..+|..+.+.++.+.|...|.+-++..|+++..|..|+.+-...|+.-.|...++++
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 44445555555555555555555555555555555555555554444444444444444444
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.011 Score=58.89 Aligned_cols=139 Identities=11% Similarity=0.064 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
..+-.+..++..|.|.-..+.+.+.++.| |.++...-.||.+.++.|+.+.|..+|++.-+.. -.++ ......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~-----~~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLD-----GLQGKI 252 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhh-----ccchhH
Confidence 34556667778899999999999999999 6788889999999999999999999999773211 0000 111223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
.++-+.+.+|..++++.+|...+.+ ..+.+|.++..-..-...+..++..- ++.++.+++..|...
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~-i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTE-ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhh-ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4566677888999999999999999 67788888865443333344444444 788899999999754
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.23 E-value=0.0003 Score=75.06 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++++=.+|...+..++++.|+..|-+||++||+++..+...+..+...+++..|+.-+.+||+. +|. .
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-----dP~-------~ 71 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-----DPT-------Y 71 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-----Cch-------h
Confidence 4556677888899999999999999999999999999999999999999999999999999764 232 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~ 514 (565)
..+|+..|.++...+++-+|...|++ ...+.|+++.....+.+ .... .+-+++++...++
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~-~~~l~Pnd~~~~r~~~E-----c~~~vs~~~fe~ai~~~~~ 133 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEK-VKKLAPNDPDATRKIDE-----CNKIVSEEKFEKAILTPEG 133 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHH-hhhcCcCcHHHHHHHHH-----HHHHHHHHhhhhcccCCcc
Confidence 35788899999999999999999999 66799999875442211 1112 5567777766553
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0056 Score=58.71 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+-.-|+-++..|+|++|..-|.+|++.. |.-.+. .-..-|.+.|.|...++.++.|++...+ +..++|.+-+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~c-----p~~~~e--~rsIly~Nraaa~iKl~k~e~aI~dcsK-aiel~pty~k 169 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESC-----PSTSTE--ERSILYSNRAAALIKLRKWESAIEDCSK-AIELNPTYEK 169 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhC-----ccccHH--HHHHHHhhhHHHHHHhhhHHHHHHHHHh-hHhcCchhHH
Confidence 3456888899999999999999998753 321211 1112366789999999999999999999 7778887665
Q ss_pred hhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhh
Q 008435 486 SKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKK 538 (565)
Q Consensus 486 ~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~ 538 (565)
+......++-.+-..- ++-|++.++.+|...++...+.+........-+.+|.
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4332222222221111 7889999999999999998888877666655555553
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.018 Score=54.69 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=87.8
Q ss_pred HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008435 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (565)
Q Consensus 376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~l 455 (565)
+....++=|.+++..-..+.++..|.... .+.||....+.|++.||..+|+++++-. -.+|+ .....+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~----fA~d~-------a~lLgl 130 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGI----FAHDA-------AMLLGL 130 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCCH-------HHHHHH
Confidence 34445556777777777888888887644 6889999999999999999999995421 11221 235567
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI 515 (565)
Q Consensus 456 G~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~ 515 (565)
+.+.+..+++.+|...+|+ .-+-+|..-.... ...++..+ +..++.++..-|+.
T Consensus 131 A~Aqfa~~~~A~a~~tLe~-l~e~~pa~r~pd~-----~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLED-LMEYNPAFRSPDG-----HLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHhhccHHHHHHHHHH-HhhcCCccCCCCc-----hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 8889999999999999999 5556665433222 22444444 67888999988874
No 185
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.017 Score=63.19 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=95.8
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------------
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL------------------- 433 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~------------------- 433 (565)
++.|..+++.++.|+|+..++ -.|+.+.......|++.+++|+|++|.+.|+..++-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 7788888899999999999999999999999986542
Q ss_pred ---hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----hhccCCCCch---hhhhhhhHHHHHHHHH--
Q 008435 434 ---FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI----GNLKEPEEPK---SKAHYYDGLVVLARYV-- 501 (565)
Q Consensus 434 ---~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera----a~~l~P~~~~---~~~~~~~~~~~La~~l-- 501 (565)
.+...|..+ +....-+|+.+.++...|+|.+|++.++++ -..++-+|.. .........+.++.++
T Consensus 160 ~~~~~q~v~~v~---e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 QVQLLQSVPEVP---EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hHHHHHhccCCC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 011112211 112235778999999999999999999994 0222222221 1111222233344333
Q ss_pred -------HHHHHHHHhcCCCcHH
Q 008435 502 -------ANITFLIFATSPSIIN 517 (565)
Q Consensus 502 -------~~~l~~Al~l~P~~~~ 517 (565)
.+.|...++.+|....
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCch
Confidence 4557788888876543
No 186
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.06 E-value=0.0044 Score=63.84 Aligned_cols=101 Identities=23% Similarity=0.177 Sum_probs=76.8
Q ss_pred HHHHHHHHHHCC--CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 372 LIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 372 l~~lA~~l~~~g--~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
.+..|+..+..| ++.+|.-.|+..-+..+.++..+..++.+++.+|+++||++.+++|+ ..+|+++
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al-----~~~~~~~------- 235 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL-----EKDPNDP------- 235 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC-----CC-CCHH-------
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HhccCCH-------
Confidence 344455555444 69999999999988889999999999999999999999999999994 4456543
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHhhccCCCCch
Q 008435 450 VASQWSGVACIRQEKW-EEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~-~eAi~~leraa~~l~P~~~~ 485 (565)
.+..++..+...+|+. +++.+++++ +...+|++|.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~q-L~~~~p~h~~ 271 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQ-LKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHH-CHHHTTTSHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHH-HHHhCCCChH
Confidence 3566788999999998 667778888 7777888774
No 187
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.013 Score=57.87 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhcCCCCChhhhhHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLIV---ASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---~l~~~P~~~~~~~~~~~---a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
..++..-|+-++..|+|+||...|+.||..+ .+...|.+++....... -+.+...|+...|+|-|++++-.. .
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se-i 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE-I 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH-H
Confidence 3455667777888888999988888887664 35667877765543321 356788999999999999999999 6
Q ss_pred hccCCCCchhhhhhhhHHHHHHHHH-----HHHHHHHHhcCCCcHHHHH
Q 008435 477 NLKEPEEPKSKAHYYDGLVVLARYV-----ANITFLIFATSPSIINLLT 520 (565)
Q Consensus 477 ~~l~P~~~~~~~~~~~~~~~La~~l-----~~~l~~Al~l~P~~~~~l~ 520 (565)
....|.+.++ +|-.+- +-+.+. .+-+.++++++|..+....
T Consensus 257 L~~~~~nvKA--~frRak-Ahaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 257 LRHHPGNVKA--YFRRAK-AHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HhcCCchHHH--HHHHHH-HHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 6677777654 222221 111111 6778999999999876543
No 188
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.97 E-value=0.00083 Score=45.15 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+++|+.+|.++...|++++|+++|++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777777777777777777777777554
No 189
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.95 E-value=0.021 Score=61.25 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=76.6
Q ss_pred HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~ 459 (565)
...+++++|+..+++..+.+|+ +...++.++...++..+|++...++++. +|.+. + .+...+..+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~---~----LL~~Qa~fL 244 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDS---E----LLNLQAEFL 244 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCH---H----HHHHHHHHH
Confidence 4468999999999999999986 6678999999999999999999999753 45543 2 233467788
Q ss_pred HHcCCHHHHHHHHHHHhhccCCCCchhhhh
Q 008435 460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489 (565)
Q Consensus 460 ~~~g~~~eAi~~leraa~~l~P~~~~~~~~ 489 (565)
...|+++.|++..++ +....|.+-..+..
T Consensus 245 l~k~~~~lAL~iAk~-av~lsP~~f~~W~~ 273 (395)
T PF09295_consen 245 LSKKKYELALEIAKK-AVELSPSEFETWYQ 273 (395)
T ss_pred HhcCCHHHHHHHHHH-HHHhCchhHHHHHH
Confidence 999999999999999 67788988766543
No 190
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.93 E-value=0.00068 Score=45.85 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+++|+.+|.++...|++++|+++|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 456777777777777777777777777654
No 191
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.90 E-value=0.0023 Score=42.95 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN 402 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~ 402 (565)
|+.++.+|..+...|++++|+.+++++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5678999999999999999999999999999986
No 192
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.011 Score=59.84 Aligned_cols=100 Identities=26% Similarity=0.286 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HHh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA---------------ISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA---------------l~l 432 (565)
..++-+..+....+.|++.+|...|+.+++.+|++.++...++.+|...|+.++|...+... +++
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 35667788889999999999999999999999999999999999999999998887776541 111
Q ss_pred h--------------hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 433 L--------------FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 433 ~--------------~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
. .+..+|+|. .+.+.++..+...|+.++|.+++-.
T Consensus 213 l~qaa~~~~~~~l~~~~aadPdd~-------~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADPDDV-------EAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 012222222 3566789999999999999999877
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.85 E-value=0.0024 Score=46.10 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+++|+.+|.+|.+.|++++|++.|+++++. +|+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL-----DPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCH
Confidence 468999999999999999999999999765 57665
No 194
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.84 E-value=0.064 Score=56.35 Aligned_cols=179 Identities=14% Similarity=0.024 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL------------ 433 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~------------ 433 (565)
+.+.......+..++..||++.|.....++++..|.++++.-..-++|.+.|+|.+......+.-+..
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999998888776664332
Q ss_pred -----hh--cCCCCChhh-------hhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHH
Q 008435 434 -----FL--AGHPTEPEA-------IDLL----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 495 (565)
Q Consensus 434 -----~l--~~~P~~~~~-------~~~~----~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~ 495 (565)
.+ ..++++.+. .+.. +.....++.-+.++|++++|.+..+++.. .+ -|+. ++
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~-~D~~--------L~ 299 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQ-WDPR--------LC 299 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hc-cChh--------HH
Confidence 00 011111100 0000 00112245556899999999999998443 11 1221 11
Q ss_pred HHHHHH--------HHHHHHHHhcCCCcHHHH----------HhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHH
Q 008435 496 VLARYV--------ANITFLIFATSPSIINLL----------TVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVA 556 (565)
Q Consensus 496 ~La~~l--------~~~l~~Al~l~P~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (565)
.+...+ ++.+++.++.+|+...++ +.+.++.+.++.... .+.=++.|.-+|.++..+|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence 222222 677788888888766433 222223233332222 23335556666666666554
No 195
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.83 E-value=0.0021 Score=43.40 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN 402 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~ 402 (565)
++.++.+|..+...|++++|+..|++|+++||+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.81 E-value=0.0012 Score=62.28 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHHHC----------CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHH
Q 008435 364 VENLTPKELIALSVKFLSK----------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-----------LEEA 422 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~----------g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-----------~~eA 422 (565)
.+|.|++.++.=|.++++. .-+++|+.-|++||.++|+..+|++.+|.+|...+. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567788888777777654 245678999999999999999999999999997753 4555
Q ss_pred HHHHHHHHH
Q 008435 423 VEYLECAIS 431 (565)
Q Consensus 423 ~~~~~rAl~ 431 (565)
.++|++|++
T Consensus 100 ~~~FqkAv~ 108 (186)
T PF06552_consen 100 TEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 556666643
No 197
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.80 E-value=0.036 Score=66.68 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
...+..+...+.+.|++++|+..|++..+.. | |...|..+-..+.+.|++++|.+.|++..+.. ....|+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD------ 578 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDPD------ 578 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCc------
Confidence 3344444445555555555555555554422 2 24445555555555555555555555553210 000111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
...+..+-.+|.+.|++++|.+.|++
T Consensus 579 --~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 579 --HITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11233344556666666666666666
No 198
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.052 Score=53.38 Aligned_cols=142 Identities=14% Similarity=0.087 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHH------HHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA------LILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A------~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
++-..|..|...+++++.++|+.++++++++.-+-.+. +..+|.+|... .++++|+.+|++|-+- ..++-
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~--yk~ee- 148 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY--YKGEE- 148 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH--Hcchh-
Confidence 34455667777788889999999999999988765443 44888888866 8999999999999543 22211
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh----hhhhhhH-HHHHHHH--H--HHHHHHHHhc
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS----KAHYYDG-LVVLARY--V--ANITFLIFAT 511 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~----~~~~~~~-~~~La~~--l--~~~l~~Al~l 511 (565)
.....+..+...+..-..+|+|.+|+..|++++. -.-+++.. +.++..+ +.-++.. . ...+++-..+
T Consensus 149 ---s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~-~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 149 ---SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR-SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 1112222344455556789999999999999553 22223321 1222221 1112111 1 5677777889
Q ss_pred CCCcH
Q 008435 512 SPSII 516 (565)
Q Consensus 512 ~P~~~ 516 (565)
+|.+.
T Consensus 225 dP~F~ 229 (288)
T KOG1586|consen 225 DPAFT 229 (288)
T ss_pred CCccc
Confidence 99865
No 199
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.70 E-value=0.03 Score=67.38 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
...+..+...+.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555556677777777777777777766 45666777777777777777777777777644
No 200
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.68 E-value=0.02 Score=60.07 Aligned_cols=82 Identities=23% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~ 461 (565)
-++.+.=++..++.+...|+++..+..||+++.+.+.|.+|.++++.|++. .|.. ..+.++|.++.+
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s~--------~~~~~la~~~~~ 373 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-----RPSA--------SDYAELADALDQ 373 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCCh--------hhHHHHHHHHHH
Confidence 445555667777778888999999999999999999999999999999654 2321 235568999999
Q ss_pred cCCHHHHHHHHHHHh
Q 008435 462 QEKWEEGIAHLERIG 476 (565)
Q Consensus 462 ~g~~~eAi~~leraa 476 (565)
+|+.++|.+.++++.
T Consensus 374 ~g~~~~A~~~r~e~L 388 (400)
T COG3071 374 LGEPEEAEQVRREAL 388 (400)
T ss_pred cCChHHHHHHHHHHH
Confidence 999999999998844
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.019 Score=59.41 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=74.8
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------h-hhcCCCCChhhhhH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK------L-FLAGHPTEPEAIDL 447 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l------~-~l~~~P~~~~~~~~ 447 (565)
.|..++..|+|++|...|+-+.+.|--+++.+..|+.+++..|.|.||....++|-+- + ++...-+|.+..-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 4666778999999999999999999999999999999999999999999988887211 0 01000011100000
Q ss_pred H-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 448 L-------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 448 ~-------~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+ .+-...++.+++..-.|.||++.|++ ....+|+.-
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr-vL~dn~ey~ 185 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR-VLQDNPEYI 185 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcChhhh
Confidence 0 00122356667777889999999999 555565543
No 202
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.012 Score=60.85 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=69.6
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~l 455 (565)
..++.+.|++.|+.+++-.+..+...- ....++|.+++..|+|++|++.|+-+.+.. ++ + .+...++
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~------~--~el~vnL 97 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DA------P--AELGVNL 97 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC----CC------C--cccchhH
Confidence 346789999999999999998776654 778899999999999999999998884321 11 1 1235668
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 008435 456 GVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 456 G~a~~~~g~~~eAi~~ler 474 (565)
+.|++.+|+|.||...-++
T Consensus 98 Acc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998887
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.64 E-value=0.058 Score=53.88 Aligned_cols=103 Identities=25% Similarity=0.274 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
-..+.-|+.-|....+.|++++|++.|++..+. .|..+ ....+...++.++++.+++++|+...++ -..+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~----~~~qa~l~l~yA~Yk~~~y~~A~~~~dr-Fi~l 100 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSP----YSEQAQLDLAYAYYKNGEYDLALAYIDR-FIRL 100 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc----ccHHHHHHHHHHHHhcccHHHHHHHHHH-HHHh
Confidence 345778899999999999999999999999543 35432 2234667789999999999999999999 7779
Q ss_pred CCCCchhhhhhhhHHHHHHHHH---------------HHHHHHHHhcCCC
Q 008435 480 EPEEPKSKAHYYDGLVVLARYV---------------ANITFLIFATSPS 514 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~~~La~~l---------------~~~l~~Al~l~P~ 514 (565)
.|.++.....++. ..+.... ...++..++.-|+
T Consensus 101 yP~~~n~dY~~Yl--kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 101 YPTHPNADYAYYL--KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred CCCCCChhHHHHH--HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 9999976443321 1222222 5677788888887
No 204
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.60 E-value=0.0049 Score=62.45 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
......|......|+.++|..+|+.|+.++|++++++..+|+.....++.-+|-.+|-+|+..
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 334566777788999999999999999999999999999999999999999999999999543
No 205
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.58 E-value=0.047 Score=48.16 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=76.3
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD------------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~------------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
.+-.|...++.|.+++|..-+++|.+.... |+-.|..|+..+...|+|+|++...++|+.--...++-
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345567778899999999999999885432 46789999999999999999999999997542222332
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+.. .....+.+.+..+.++...|+.+||+..|+.+..
T Consensus 92 ~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222 2233445778889999999999999999998443
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.02 Score=63.02 Aligned_cols=88 Identities=27% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~ 461 (565)
..+.++|.+.++...+..|+.+-.++..|.++...|+.++|++.|++++... .+........++-+|.++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--------SEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------hhHHhHHHHHHHHHHHHHHH
Confidence 3455678888999999999999999999999999999999999999986321 11122222356679999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 008435 462 QEKWEEGIAHLERIGN 477 (565)
Q Consensus 462 ~g~~~eAi~~leraa~ 477 (565)
+.+|++|.+++.++..
T Consensus 318 ~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLK 333 (468)
T ss_pred HchHHHHHHHHHHHHh
Confidence 9999999999999433
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.51 E-value=0.022 Score=52.00 Aligned_cols=93 Identities=27% Similarity=0.271 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD----------------------NINALILMGQTQLQKGLLEEAVEYLEC 428 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~----------------------~a~A~~~LG~~~~~~g~~~eA~~~~~r 428 (565)
.++..|......|+.++++..+++++.+..+ ...+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4455666677788888888888888886633 244677788888899999999999999
Q ss_pred HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 429 Al~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
++.. +|.+. .++..+-.+|...|+..+|+++|++.
T Consensus 88 ~l~~-----dP~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 88 ALAL-----DPYDE-------EAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHH-----STT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhc-----CCCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9765 45433 35777889999999999999999993
No 208
>PLN03077 Protein ECB2; Provisional
Probab=96.40 E-value=0.029 Score=66.46 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=63.7
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~ 454 (565)
+-..+.+.|+.++|...|++. +.|...|..+...|.+.|+.++|++.|++..+. ...|+.. .+..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~--------T~~~ 594 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEV--------TFIS 594 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCcc--------cHHH
Confidence 345677788999998888876 667888999999999999999999999987542 1234322 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008435 455 SGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 455 lG~a~~~~g~~~eAi~~lera 475 (565)
+-.++.+.|+.++|.++|+++
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHH
Confidence 445678888888888888884
No 209
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.34 E-value=0.051 Score=64.55 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
+.....|..+...|++++|...++++++..+.. ..++..+|.++...|++++|..+++++++.. .... .
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~---~~~g---~ 526 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA---RQHD---V 526 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hhhc---c
Confidence 344557778889999999999999999865543 2467889999999999999999999997653 0100 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
......++.++|.++..+|++++|.++++++.
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11222356778999999999999999999843
No 210
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.31 E-value=0.015 Score=67.15 Aligned_cols=93 Identities=18% Similarity=0.052 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...+..+...+.+.|+.++|...|++..+ .|...|..|...|.+.|+.++|++.|++..+.. ..|+
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---~~Pd-------- 425 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---VAPN-------- 425 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCC--------
Confidence 34455677778888999999999988754 356788899999999999999999999875431 2232
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
...+..+-.++.+.|+.++|.+.|+.+
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 123444666778888888888888874
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.05 Score=55.19 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-------
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT------- 440 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~------- 440 (565)
+++.+...|..+++.|++++|++-|+.|++..--++..-+.++.++++.|+++.|+++....|+.. +...|.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCcccee
Confidence 688889999999999999999999999999999999999999999999999999999999998875 333331
Q ss_pred ---Chh--------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 441 ---EPE--------AIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 441 ---~~~--------~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
|.. .......+...-+.++++.|+++.|.+.+..
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 000 0111223444456678999999999998765
No 212
>PLN03077 Protein ECB2; Provisional
Probab=96.28 E-value=0.06 Score=63.81 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.|...+..+...+...|+.++|+.+|++..+ ..|+...... +=..+.+.|+.++|.++|++..+.. ...|+
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-ll~a~~~~g~v~ea~~~f~~M~~~~--gi~P~---- 624 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS-LLCACSRSGMVTQGLEYFHSMEEKY--SITPN---- 624 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH-HHHHHhhcChHHHHHHHHHHHHHHh--CCCCc----
Confidence 3556677777888999999999999999887 4577666444 4456889999999999999986331 11221
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhcCCCcH
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFATSPSII 516 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l~P~~~ 516 (565)
...|..+..++.+.|+++||.+.+++. . ..|+. ..+. +++.-.... ....++.++++|+..
T Consensus 625 ----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~-~~pd~-~~~~----aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 625 ----LKHYACVVDLLGRAGKLTEAYNFINKM-P-ITPDP-AVWG----ALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHHHC-C-CCCCH-HHHH----HHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 134566888999999999999999993 2 34442 2211 211111111 556788889999854
No 213
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.026 Score=54.00 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
..+++|-.+.+.+++++|+..++.++..-.+. .-+-..||.+..+.|++|+|+..+....+ ...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------------~~w 157 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------------ESW 157 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------------ccH
Confidence 45678888999999999999999999755443 55778999999999999999998877621 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
........|.++...|+-++|++.|++ +...+
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~k-Al~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEK-ALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHH-HHHcc
Confidence 222234489999999999999999999 54444
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.25 E-value=0.0051 Score=42.01 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHH
Q 008435 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIA 470 (565)
Q Consensus 425 ~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~ 470 (565)
+|+|||++ +|+++ .+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~-----~P~n~-------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA-------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH-------HHHHHHHHHHHHCcCHHhhcC
Confidence 47889765 57765 579999999999999999974
No 215
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.24 E-value=0.034 Score=64.25 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
+...+......+.+.|++++|...++..++.. +.+...+..|...|.+.|+.++|.+.|++..+ |+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d------ 390 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------KN------ 390 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------CC------
Confidence 34556666777788888888888888888876 66778888888888888998888888887721 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
...|..+..+|.+.|+.++|++.|+++.
T Consensus 391 --~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 391 --LISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred --eeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1246668889999999999999999944
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.018 Score=52.58 Aligned_cols=64 Identities=30% Similarity=0.325 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.....++..+...|++++|+..+++++..||.+-.+|..+-.+|...|+..+|++.|++..+..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3455667778889999999999999999999999999999999999999999999999996654
No 217
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0093 Score=58.64 Aligned_cols=77 Identities=22% Similarity=0.156 Sum_probs=71.0
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.|.++|-..|+.+.-+...|..+++.++++.+..-.++|++++|+.+.+++.+|....+...+++|+..++||.++.
T Consensus 32 ~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 32 CYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 45778888888888888999999999999999999999999999999999999999999999999999999997763
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.21 E-value=0.055 Score=56.27 Aligned_cols=103 Identities=12% Similarity=0.038 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
+....|.+++..+.++++++.|++|+...-++ -.++..||.++.+..++++|+.+..+|.++- -...-+|. .
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~-~ 201 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDW-S 201 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCch-h
Confidence 34458888999999999999999999976655 3478899999999999999999999997763 11111111 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.-.-..+.+.+++++..+|+...|.++.+++
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 1122346788999999999999999999983
No 219
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.18 E-value=0.081 Score=62.85 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
....+|..+...|++++|...++++++..... ..++..+|.++...|++++|.++++++++...-.+.+.
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~---- 568 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ---- 568 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc----
Confidence 34567888889999999999999999754321 35677889999999999999999999987531111110
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.......+..+|.++...|++++|.+.++++..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 011112345678889999999999999999433
No 220
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.17 E-value=0.0099 Score=40.98 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+|..||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999998754
No 221
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.029 Score=55.41 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHh--------hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALN--------KEPDN----------INALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~--------~dP~~----------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
..+-+.|..++..|++.||...|+.|+. ..|.+ ...+.++.+++...|+|=|++++....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999998853 34554 45678899999999999999999999965
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 432 l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
. +|++. .|++..|.++..-=+.+||.+-|.+ +.+++|.
T Consensus 259 ~-----~~~nv-------KA~frRakAhaa~Wn~~eA~~D~~~-vL~ldps 296 (329)
T KOG0545|consen 259 H-----HPGNV-------KAYFRRAKAHAAVWNEAEAKADLQK-VLELDPS 296 (329)
T ss_pred c-----CCchH-------HHHHHHHHHHHhhcCHHHHHHHHHH-HHhcChh
Confidence 3 34433 5788899999999999999999999 5556554
No 222
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.08 Score=58.15 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEY 425 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~ 425 (565)
.++++..-..+...|++++|+....+.+...|++..|.+.-=.++.+.++|++|+..
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ 68 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL 68 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH
Confidence 355555556666667777777777777777777777666666666666666666643
No 223
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.06 E-value=0.085 Score=60.39 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=77.0
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHH
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG 456 (565)
......+++.+|.....+.++..|+-..|...-|.++.+.|+.+||..+++.. .. ..++| + .....+-
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~----~~~~D----~---~tLq~l~ 84 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL-YG----LKGTD----D---LTLQFLQ 84 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-cc----CCCCc----h---HHHHHHH
Confidence 44567788889999999999999999999999999999999999999776554 11 12221 1 2344577
Q ss_pred HHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH
Q 008435 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496 (565)
Q Consensus 457 ~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~ 496 (565)
.+|.++|++|+|...|++ +...+|. -+...+++.+++.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~-~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYER-ANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHhhhhHHHHHHHH-HHhhCCc-HHHHHHHHHHHHH
Confidence 889999999999999999 6667777 3333444444433
No 224
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.04 E-value=0.0068 Score=62.42 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~ 452 (565)
-.+|...+..|.+++|+++|.+|+.++|..+..|...|.++..++++..|+.-+..|+++ +|+.. .-|
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----n~Dsa-------~~y 185 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----NPDSA-------KGY 185 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-----Ccccc-------ccc
Confidence 345667788999999999999999999999999999999999999999999999999664 45433 124
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 453 QWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 453 ~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
-+.|.++..+|++++|...++.+..
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHh
Confidence 4578999999999999999999544
No 225
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.96 E-value=0.21 Score=48.78 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
++..|.-|+.+--+|.-+...|+++.|.+.|+..+++||.+-.|+.+.|..++.-|++.-|.+-+.+- ...||+|
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f-----YQ~D~~D 166 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF-----YQDDPND 166 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH-----HhcCCCC
Confidence 33345568888899999999999999999999999999999999999999999999999998888776 3446665
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
| + + ..|+=.. ...-+..+|...+.+=+.
T Consensus 167 P-----f-R-~LWLYl~-E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 167 P-----F-R-SLWLYLN-EQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred h-----H-H-HHHHHHH-HhhCCHHHHHHHHHHHHH
Confidence 5 1 1 1222222 344466777765544244
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.94 E-value=0.17 Score=46.30 Aligned_cols=137 Identities=23% Similarity=0.247 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ-TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~-~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
....+...+......+++++++..+++++..++++.......+. ++...|++++|...|++++.. +|. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~----~~ 164 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-----DPE----LN 164 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC----cc
Confidence 45667778888888888999999999999988888777777777 899999999999999999542 221 00
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~-~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~ 514 (565)
.........+..+...+++++|+..+++ +....+. ...........+...+... ...+.+++...|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEK-ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHH-HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 1112334455557888899999999999 5445545 2222111111111111011 6777888888886
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.085 Score=54.40 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH-HHH
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL-IVA 451 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~-~~a 451 (565)
-..|.-+.+.|-|++|++..++|+++||.+.-+.+.++-++...|+++|+.+..++--. +-...+.. ..-
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted---------~Wr~s~mlasHN 249 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED---------DWRQSWMLASHN 249 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc---------chhhhhHHHhhh
Confidence 34556678899999999999999999999999999999999999999999998877611 11111111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HhhccCCCCchhhhhhh
Q 008435 452 SQWSGVACIRQEKWEEGIAHLER-IGNLKEPEEPKSKAHYY 491 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~ler-aa~~l~P~~~~~~~~~~ 491 (565)
|..-+.++.+.++|+.|.+.|++ +..+++.+|......|.
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~a~~~~l 290 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAVARDVYL 290 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHHHHHHhhccchhhhhhhh
Confidence 33467788889999999999997 34566767775544444
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.81 E-value=0.021 Score=38.27 Aligned_cols=30 Identities=37% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+++|+.+|.++...|++++|+++|++++++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999875
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.77 E-value=0.11 Score=53.17 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=80.2
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
++.......+.+..++|...|++|++..+-+...|...|.+.... ++.+.|...|+++++.. |.+. +
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~---~---- 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDP---D---- 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-H---H----
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCH---H----
Confidence 444444455556688999999999977777899999999997775 55555999999998763 3322 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------HHHHHHHHhcCCCcHH
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------ANITFLIFATSPSIIN 517 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------~~~l~~Al~l~P~~~~ 517 (565)
.+......+...|+.+.|...||++...+ |.+.... ...+.++..-..+ .+..+++.+.-|+...
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-~~~~~~~-~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSL-PKEKQSK-KIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTS-SCHHHCH-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-CchhHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 12223355678999999999999955543 3333101 1122222222222 4556666666666433
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.72 E-value=0.052 Score=56.44 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
+.+..++.......++.+++.+-+..+.+-..+ ..++..+|..+.-.+.+++++++|++|++..+...||
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~----- 158 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA----- 158 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----
Confidence 455566666666667778888777777754333 3678889999999999999999999998753111111
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~ 478 (565)
-.-..++..+|..+.+..|+++|.-+..+++..
T Consensus 159 -~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 159 -MLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred -eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 111236777999999999999999999995553
No 231
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.63 E-value=0.1 Score=58.07 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=89.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.|...|+.++-++..|..+-..|++++|...++.|-.+|+.|-.....-+..+.+.|+.++|++....-.+.. .+
T Consensus 218 d~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~---~~ 294 (517)
T PF12569_consen 218 DKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED---VD 294 (517)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC---CC
Confidence 357888888999999999999999999999999999999999999999999999999999999999887763211 01
Q ss_pred CCChhhhhHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 008435 439 PTEPEAIDLLIVASQ--WSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 439 P~~~~~~~~~~~a~~--~lG~a~~~~g~~~eAi~~leraa 476 (565)
|.. +.....-.|+ --|.+|.++|++..|+..|..+.
T Consensus 295 ~~~--~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 295 PLS--NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred ccc--CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 210 1111111333 27889999999999999988743
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.60 E-value=0.062 Score=59.19 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~----~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
|.++--++..|..+..+|+.++|++.|++++....+ ..-.++.+|.++..+++|++|.++|.+..+..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------- 335 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------- 335 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------
Confidence 346888999999999999999999999999853333 24578999999999999999999999996531
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKW-------EEGIAHLERIG 476 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~-------~eAi~~leraa 476 (565)
.+....-.|..|.|+...|+. ++|.+.|+++-
T Consensus 336 ---~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 336 ---KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred ---ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 122222245588899999999 88999988843
No 233
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.59 E-value=0.0099 Score=39.90 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN 402 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~ 402 (565)
+.++.+|..+...|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568899999999999999999999999999964
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.49 E-value=0.46 Score=43.36 Aligned_cols=134 Identities=26% Similarity=0.319 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
........+..+...+++.++...+..++. ..+.....+...|..+...+++++|++.+++++.. ++.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--- 129 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-----DPDPD--- 129 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-----CCCcc---
Confidence 355677888889999999999999999998 89999999999999999999999999999999643 22211
Q ss_pred hHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhccCCC-CchhhhhhhhHHH--HHHHHH--HHHHHHHHhcCCC
Q 008435 446 DLLIVASQWSGV-ACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLV--VLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 446 ~~~~~a~~~lG~-a~~~~g~~~eAi~~leraa~~l~P~-~~~~~~~~~~~~~--~La~~l--~~~l~~Al~l~P~ 514 (565)
......+. ++...|++++|...++++ ...+|. .......+..... ..+... ...+.+++...+.
T Consensus 130 ----~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 130 ----LAEALLALGALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 11223444 899999999999999995 435553 1111111111100 000111 7788888888888
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.42 Score=47.52 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHH-HHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435 364 VENLTPKELIAL-SVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (565)
Q Consensus 364 ~~~~~~~~l~~l-A~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~ 436 (565)
++...+...+++ +..+...+++++|..++++|.+-.-+| +.++-..|.+.....++.|+.++|+||..+-.-.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334444445555 455566789999999999999655444 4566667777778889999999999997653123
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
|.|+-+ ..+....|.+ .+..+.++|++.|++++...
T Consensus 105 GspdtA------AmaleKAak~-lenv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 105 GSPDTA------AMALEKAAKA-LENVKPDDALQLYQRALAVV 140 (308)
T ss_pred CCcchH------HHHHHHHHHH-hhcCCHHHHHHHHHHHHHHH
Confidence 444311 1222222332 46677888888888855433
No 236
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.26 E-value=0.19 Score=42.37 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=39.1
Q ss_pred hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.+..++++++.+|+|.++.+.+|..+...|++++|++.+-++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999864
No 237
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.37 Score=48.45 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------HHHHHHHHhcCCCcHH
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------ANITFLIFATSPSIIN 517 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------~~~l~~Al~l~P~~~~ 517 (565)
..+.+.|+..+|+++||...++. +...++++|...... +.++... .+.+.+....+|++.-
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~e-aL~kd~~dpetL~Nl----iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEE-ALDKDAKDPETLANL----IVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHH-HHhccCCCHHHHHHH----HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 44578899999999999999999 666778887643311 1122211 6777777788887653
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.62 Score=48.25 Aligned_cols=103 Identities=10% Similarity=0.047 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~ 453 (565)
..+..+..+|++-+|-...++.|+..|.+--++-.--.++..+|+.+.-...++|++-.- ++ +.+-....+.
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-------n~-dlp~~sYv~G 179 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-------NA-DLPCYSYVHG 179 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-------CC-CCcHHHHHHH
Confidence 445566778899999999999999999999999988899999999988888999985320 22 2233333455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 454 ~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
.++.++.+.|-|++|.+.-++ +.++||.|.-
T Consensus 180 myaFgL~E~g~y~dAEk~A~r-alqiN~~D~W 210 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADR-ALQINRFDCW 210 (491)
T ss_pred HHHhhHHHhccchhHHHHHHh-hccCCCcchH
Confidence 577888999999999999999 7778888763
No 239
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.05 E-value=0.16 Score=47.37 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
..+.+.....+..++.+++..+++..-.+.|+.++.-..-|.++..+|+|.+|+..++.+.+. .|..+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~~p------- 78 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APGFP------- 78 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCh-------
Confidence 346677777788999999999999999999999999999999999999999999999998432 22222
Q ss_pred HHHHHHHHHHHHcCCHH
Q 008435 450 VASQWSGVACIRQEKWE 466 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~ 466 (565)
.+...++.|+..+|+.+
T Consensus 79 ~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 79 YAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHHcCChH
Confidence 23344778888888743
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04 E-value=1.1 Score=43.05 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~---A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+...|+......+.+.. +.....++....++.... +-..++..+...|++++|+..++.++.. |. +.
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~------t~---De 122 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ------TK---DE 122 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------ch---hH
Confidence 44567777777776666 888888888998877754 4456778888999999999999999642 32 33
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch-hhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~-~~~~~~~~~~~La~~l--~~~l~~Al~l~P~ 514 (565)
.....+...++.+...+|++|+|...++. .. ++.... ......+.++..|..- +..|++++..+++
T Consensus 123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t-~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 123 NLKALAALRLARVQLQQKKADAALKTLDT-IK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 44445677899999999999999999987 32 222111 1111122333333222 7888999888644
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.93 E-value=0.45 Score=42.93 Aligned_cols=65 Identities=23% Similarity=0.174 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
+-.-|......|+.++|++.|.+++.+. |..+ .+|.+.+.++.-+|+.++|++-++++...-+|.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~-----P~ra-------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA-----PERA-------SAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc-----ccch-------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 3456888889999999999999997653 5433 367789999999999999999999965554544
No 242
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.85 E-value=0.65 Score=55.83 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=99.6
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a 451 (565)
+..+.-.|...+++++|.++|++.++..-+....|...|..++++.+-++|.+.+.||++.+ |.. +.. ..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-----Pk~-eHv----~~ 1602 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-----PKQ-EHV----EF 1602 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-----chh-hhH----HH
Confidence 44556667778899999999999999999999999999999999999999999999997654 431 111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCC
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPS 514 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~ 514 (565)
.-..++..++.|+.+.++..|+- .....|...+.|.-|.+.-+..+..- +..|+|++.++=.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEg-ll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEG-LLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHH-HHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 23356778999999999999999 66677777766655544333222211 7889999987743
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.58 E-value=0.025 Score=37.36 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+|++.+|.++...|++++|++.|++.++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3566677777777777777777776654
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.45 E-value=0.049 Score=35.90 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
+++++|.++...|++++|++.|++ +....|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~-~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQR-LIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-HHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH-HHHHCcC
Confidence 578899999999999999999999 5545554
No 245
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.34 E-value=0.23 Score=50.85 Aligned_cols=108 Identities=18% Similarity=0.062 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHH-CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 367 LTPKELIALSVKFLS-KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~-~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
.+-+.+...|..... .++.+.|...|+++++..|++...|......+...|+.+.|...|+++++.. |.+. .
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~-~- 105 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEK-Q- 105 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHH-H-
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----Cchh-H-
Confidence 355677888888777 4555559999999999999999999999999999999999999999996542 2111 0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
....|......-...|+.+...+..+| +....|++.
T Consensus 106 --~~~iw~~~i~fE~~~Gdl~~v~~v~~R-~~~~~~~~~ 141 (280)
T PF05843_consen 106 --SKKIWKKFIEFESKYGDLESVRKVEKR-AEELFPEDN 141 (280)
T ss_dssp --CHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHTTTS-
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhhh
Confidence 111233344455778999999999999 555666654
No 246
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.04 E-value=1.8 Score=46.13 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=72.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------hcC---CCC---------ChhhhhHHHHHH
Q 008435 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF------LAG---HPT---------EPEAIDLLIVAS 452 (565)
Q Consensus 391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~------l~~---~P~---------~~~~~~~~~~a~ 452 (565)
.+-..|+.+|.+++++..++.++.++|+.+.|.+..+||+-... ... ++. ..++. .+..+.
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR-~fflal 106 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR-QFFLAL 106 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch-HHHHHH
Confidence 34455799999999999999999999999999999999965430 100 111 11111 223456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCC-Cchhhhhhhh
Q 008435 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYD 492 (565)
Q Consensus 453 ~~lG~a~~~~g~~~eAi~~leraa~~l~P~-~~~~~~~~~~ 492 (565)
+.....+.+.|.+..|.++.+= +..++|. ||-......+
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~Kl-LlsLdp~~DP~g~ll~ID 146 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKL-LLSLDPDEDPLGVLLFID 146 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHH-HHhcCCCCCcchhHHHHH
Confidence 6677788999999999999877 7779998 8865443333
No 247
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.95 E-value=0.33 Score=39.76 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT---QLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~---~~~~g~~~eA~~~~~rAl~l 432 (565)
+....+.|..++...+.++|+..++++|+..++..+-+..+|.+ |...|++.+.+++.-+=+++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998888888876 56778888888776655443
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.80 E-value=1.2 Score=47.47 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHH---CCCCCchHHHHHH-HHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLS---KGDKERPIPLLQL-ALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECAI 430 (565)
Q Consensus 369 ~~~l~~lA~~l~~---~g~~~eAi~~l~~-AL~~dP~~a~A~~~LG~~~~~~---------g~~~eA~~~~~rAl 430 (565)
....++.|.++.+ .|+.++|+..+.+ ....++.+++.+..+|.+|-.. ...++|+++|+++-
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 4556777888888 8999999999999 5567788999999999998643 24689999999994
No 249
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.80 E-value=0.14 Score=35.48 Aligned_cols=31 Identities=32% Similarity=0.300 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+.++..+|.+|...|++++|+++++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678999999999999999999999998763
No 250
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.75 E-value=0.13 Score=38.87 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~ 412 (565)
-+|.+|..+...|++++|..+.+.+|+.+|+|..|......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467889999999999999999999999999998887665544
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.58 E-value=0.058 Score=37.07 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=25.3
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHH--hhCCCCH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLAL--NKEPDNI 403 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL--~~dP~~a 403 (565)
+..+|..+.+.|++++|+.+|+++| ..+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 6789999999999999999999954 5666553
No 252
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.57 E-value=1.2 Score=47.11 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~--~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
.+-..+..+...+-.|++++|.+.|+..+. ||.-- -....|.. ..+.|..+.|..|.++|-++. |+-+
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~A-----p~l~--- 188 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKA-----PQLP--- 188 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-----cCCc---
Confidence 344556677788889999999999986653 55432 22222222 346789999999999995542 3321
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--hhccCCCCchhhhhhhhHHHHHHHHH--------HHHHHHHHhcCCCc
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERI--GNLKEPEEPKSKAHYYDGLVVLARYV--------ANITFLIFATSPSI 515 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~lera--a~~l~P~~~~~~~~~~~~~~~La~~l--------~~~l~~Al~l~P~~ 515 (565)
.+....-...+..|++|.|++..+.. ....+++..+... .-.+...+..+ .+...+++++.|++
T Consensus 189 ----WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r--AvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl 262 (531)
T COG3898 189 ----WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR--AVLLTAKAMSLLDADPASARDDALEANKLAPDL 262 (531)
T ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc
Confidence 22223344568999999999998862 2233433332111 00111111111 67778888999986
Q ss_pred HH
Q 008435 516 IN 517 (565)
Q Consensus 516 ~~ 517 (565)
..
T Consensus 263 vP 264 (531)
T COG3898 263 VP 264 (531)
T ss_pred ch
Confidence 53
No 253
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.51 E-value=0.78 Score=51.68 Aligned_cols=122 Identities=19% Similarity=0.102 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHC-----CCCCchHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLSK-----GDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKG-----LLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~-----g~~~eAi~~l~~AL~-----~dP~~a~A~~~LG~~~~~~g-----~~~eA~~~~~rAl~l 432 (565)
+....+.+|..+... +|.++|+.+++.+.+ ..-.++.+.+.+|.+|.+.. +.+.|..+|.+|.+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 455566777776543 588899999999977 22237779999999999854 678899999999543
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--------
Q 008435 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------- 501 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g---~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------- 501 (565)
++| .+.+.+|.++.... +..+|.++|..++.. .+ .++.+.++.++
T Consensus 323 ----g~~----------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---G~-------~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 323 ----GNP----------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---GH-------ILAIYRLALCYELGLGVER 378 (552)
T ss_pred ----CCc----------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---CC-------hHHHHHHHHHHHhCCCcCC
Confidence 222 35677899987655 578999999996552 12 23344555555
Q ss_pred -----HHHHHHHHhcCC
Q 008435 502 -----ANITFLIFATSP 513 (565)
Q Consensus 502 -----~~~l~~Al~l~P 513 (565)
..+++++.+.++
T Consensus 379 ~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN 395 (552)
T ss_pred CHHHHHHHHHHHHHccC
Confidence 788999998884
No 254
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.47 E-value=0.41 Score=44.13 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.+.+.....+..++.+++..++...--+-|+.++....-|.++...|+|+||+..++...+. .+. ...
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-----~~~-------~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS-----AGA-------PPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-----CCC-------chH
Confidence 35566666677999999999999999999999999999999999999999999999998431 111 112
Q ss_pred HHHHHHHHHHHcCCHH
Q 008435 451 ASQWSGVACIRQEKWE 466 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~ 466 (565)
+...++.|+.-+||.+
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 3344777888888743
No 255
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=1.1 Score=45.21 Aligned_cols=105 Identities=22% Similarity=0.147 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 370 KELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 370 ~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
..+.++|..+.. .+++.+|.-.|+..-++.|-.+.....++.+.+.+|+|+||...++.|+.. +++++
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d~~dp--- 241 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----DAKDP--- 241 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----cCCCH---
Confidence 345556666543 357889999999999999999999999999999999999999999999653 45443
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++.++-.+-..+|.-+++.+-+-.-.....|+++-+
T Consensus 242 ----etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 242 ----ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred ----HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 3455677777888988887775443266667777644
No 256
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.36 Score=49.20 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=67.1
Q ss_pred HHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (565)
Q Consensus 378 ~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~ 457 (565)
.+....++++|++++.--.+.+|.+--++..||.+|+...+|.+|.++|++.-.+ .|... .-.+.-+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-----~P~~~-------qYrlY~AQ 86 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-----HPELE-------QYRLYQAQ 86 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ChHHH-------HHHHHHHH
Confidence 3477889999999999999999999999999999999999999999999998432 23211 11233456
Q ss_pred HHHHcCCHHHHHHHHHH
Q 008435 458 ACIRQEKWEEGIAHLER 474 (565)
Q Consensus 458 a~~~~g~~~eAi~~ler 474 (565)
.+++.+.+.+|+.....
T Consensus 87 SLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFL 103 (459)
T ss_pred HHHHhcccHHHHHHHHH
Confidence 67777888888777665
No 257
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.73 Score=46.33 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHH----hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLAL----NKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL----~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+.-.-.+|....+-||.+.|..++++.- .+| -++..++-+++.++.-.+++.+|...|.+.+.. ||.++
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~~ 286 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRNA 286 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCch
Confidence 4456678888999999999999999443 233 345667788888888999999999999999643 45444
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYVANITFLIFA 510 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l~~~l~~Al~ 510 (565)
.+..+-+.|+...|+..+|++.++. +....|...... ...+++...++-+|-++.+
T Consensus 287 -------~a~NnKALcllYlg~l~DAiK~~e~-~~~~~P~~~l~e----s~~~nL~tmyEL~Ys~~~~ 342 (366)
T KOG2796|consen 287 -------VANNNKALCLLYLGKLKDALKQLEA-MVQQDPRHYLHE----SVLFNLTTMYELEYSRSMQ 342 (366)
T ss_pred -------hhhchHHHHHHHHHHHHHHHHHHHH-HhccCCccchhh----hHHHHHHHHHHHHhhhhhh
Confidence 2344577899999999999999999 665666654321 1233455544333444333
No 258
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.03 E-value=1.7 Score=52.57 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=69.0
Q ss_pred CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh---------------------
Q 008435 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--------------------- 443 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~--------------------- 443 (565)
..+..+-|++.+.-+||++-.|...=.-+.+.++.++|.+.++||+... |+++.+
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3344555666666666666666666555666666666666666665431 222110
Q ss_pred ----------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhc
Q 008435 444 ----------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFAT 511 (565)
Q Consensus 444 ----------~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l 511 (565)
..+. ..+|..|.-+|...+++++|.++|+..+...- +....|..|.+.+...-... .+.+++|++-
T Consensus 1516 l~kVFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 0010 02345577788888999999999988665322 44444443333222211111 5677788877
Q ss_pred CCC
Q 008435 512 SPS 514 (565)
Q Consensus 512 ~P~ 514 (565)
=|.
T Consensus 1594 lPk 1596 (1710)
T KOG1070|consen 1594 LPK 1596 (1710)
T ss_pred cch
Confidence 776
No 259
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.97 E-value=0.11 Score=50.90 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=51.8
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
....+.++.+.|.++|.+|+++.|+....|+.+|....+.|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34567889999999999999999999999999999999999999999999999665
No 260
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.81 E-value=0.089 Score=32.99 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.+++.+|.++...|++++|+.+|+++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4567777777777777777777777754
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.74 E-value=1.1 Score=42.64 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
..+..+|..+.+-|+.++|++.|.++.+..-.. .+.+..+=.+....++++....+.++|-... ....+ .+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~---~~~~d---~~ 110 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI---EKGGD---WE 110 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---hccch---HH
Confidence 446789999999999999999999988865432 5677778888889999999999999995542 11221 12
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
..+.....-|..+..+++|.+|.+.|-.
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 2222344578888999999999999977
No 262
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.44 E-value=0.22 Score=31.02 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
++..+|.++...|++++|+..+++ +...+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~-~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEK-ALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH-HHccCCC
Confidence 467799999999999999999999 5545554
No 263
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.30 E-value=2.6 Score=43.76 Aligned_cols=101 Identities=11% Similarity=0.165 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hc--------CCC
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF--LA--------GHP 439 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~--l~--------~~P 439 (565)
++..+.| -++.+..+-++....||++||+++.||..|+.- ...-..+|+..+++|++... +. +..
T Consensus 188 ~eIMQ~A---WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 188 DEIMQKA---WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHH---HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc
Confidence 3445554 456677778899999999999999999998864 33457889999999877531 00 000
Q ss_pred CChh---hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 440 TEPE---AIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 440 ~~~~---~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.|.. +........-.++.|..++|+..||++.++.+
T Consensus 263 ~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 263 HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0110 11111112334888999999999999999983
No 264
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.99 E-value=1.2 Score=43.82 Aligned_cols=92 Identities=17% Similarity=0.085 Sum_probs=58.2
Q ss_pred CCCCchHHHHHHHHh----hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----hcCCCCChhhhhHHHHH
Q 008435 383 GDKERPIPLLQLALN----KEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLF----LAGHPTEPEAIDLLIVA 451 (565)
Q Consensus 383 g~~~eAi~~l~~AL~----~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~----l~~~P~~~~~~~~~~~a 451 (565)
..+++|++.|.-|+- ...++ +..+..+|++|...|+.++...++++|++.-. -...|....+ ....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~---~~~l 167 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD---EATL 167 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch---HHHH
Confidence 345566666665543 22222 67788999999999986555555555544320 1122222111 1235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+.+|..+.+.|++++|+.+|.++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 67799999999999999999999544
No 265
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.76 Score=47.58 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
++.+-+.|..++..++|..|+..|.+.|...-.| +..|.+.+-+....|+|..|+.-..+|+. .+|++.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~-----~~P~h~-- 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK-----LKPTHL-- 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-----cCcchh--
Confidence 6677889999999999999999999999966544 56788899999999999999999999954 456544
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.+++.-+.|+..++++++|..+.+.
T Consensus 154 -----Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 154 -----KAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred -----hhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 4566677899999999999999988
No 266
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.90 E-value=0.15 Score=52.80 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=61.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
|...+.++.-+...|.+++..++...|++-+..|++++|+.+.-|-..|+....+|+|++|...++.|.++
T Consensus 141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 33334455566677888999999999999999999999999999999999999999999999999999664
No 267
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.65 E-value=6.8 Score=45.54 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
|.........|..+.+.|+.++|..+++..-...++|-..+-.+-.+|...|+.++|..+|++++.. +|. .
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-----~P~-e--- 110 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-----YPS-E--- 110 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----CCc-H---
Confidence 3356778888999999999999999998888888999999999999999999999999999999654 343 1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIA 470 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~ 470 (565)
+-.+.+=.+|.+-++|.+=.+
T Consensus 111 ----ell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 111 ----ELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 112234456666666655333
No 268
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.52 E-value=0.31 Score=52.67 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHH-HhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-h-hh-
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLA-LNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAISK-L-FL- 435 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~A-L~~dP~--------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l-~-~l- 435 (565)
++..++..+...+..|++.+|.+++... +...|. .--+|.+||.++++.|.|.-+..+|.+|++- . .+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5667888888999999999999887654 445555 2346789999999999999999999999851 1 11
Q ss_pred ---cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 436 ---AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 436 ---~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
.+.|...-......+..|+.|..|...|+.-+|.+.|.++.. ..-.+|..|.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~-vfh~nPrlWL 373 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH-VFHRNPRLWL 373 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH-HHhcCcHHHH
Confidence 111110001111234688999999999999999999999443 4445665433
No 269
>PRK10941 hypothetical protein; Provisional
Probab=91.36 E-value=0.68 Score=47.20 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=54.7
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.+=..+.+.+++++|+++.++.+..+|+++.-+-..|.+|.+.|.+..|..-++.-++..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 455567889999999999999999999999999999999999999999999999997653
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.33 E-value=12 Score=35.62 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
+-|..|..+.+.++.++|+..|...-.-.-++ .-|....|-+..+.|+-++|+.+|..+-
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 46688888999999999999998876655444 4577888999999999999999999883
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.16 E-value=2.9 Score=39.07 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
..++..+..+-.+.++.++++..+... . .+.|+.++ ....-|..+...|++++|+..|+. +....|.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~AL-r----vLRP~~~e-------~~~~~~~l~i~r~~w~dA~rlLr~-l~~~~~~ 76 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDAL-R----VLRPEFPE-------LDLFDGWLHIVRGDWDDALRLLRE-LEERAPG 76 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH-H----HhCCCchH-------HHHHHHHHHHHhCCHHHHHHHHHH-HhccCCC
Confidence 456677777888889999999888655 2 34576542 233468889999999999999999 6666777
Q ss_pred CchhhhhhhhHHHHHHHHH-HHHHHHHHhcCCC
Q 008435 483 EPKSKAHYYDGLVVLARYV-ANITFLIFATSPS 514 (565)
Q Consensus 483 ~~~~~~~~~~~~~~La~~l-~~~l~~Al~l~P~ 514 (565)
.+-.+..+..++..++... ..+..++++..++
T Consensus 77 ~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPSWRRYADEVLESGAD 109 (160)
T ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Confidence 7654442222222222111 6677777777654
No 272
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.89 E-value=12 Score=40.83 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=83.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH---HHcCCHHH
Q 008435 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC---IRQEKWEE 467 (565)
Q Consensus 391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~---~~~g~~~e 467 (565)
.|++-++.+|.|.++|+..=.+-...|+.++-.+.|+|||..- |...+....-...|.|+--++ ...++.+.
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-----pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-----PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5788899999999999999999999999999999999997531 221112222223556655554 56888999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh
Q 008435 468 GIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 468 Ai~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~ 522 (565)
+.+.|+. +..+-|+..- -+...++..+.+. .+.+..|+..-|..+.+.+-+
T Consensus 385 tr~vyq~-~l~lIPHkkF---tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI 444 (677)
T KOG1915|consen 385 TRQVYQA-CLDLIPHKKF---TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHH-HHhhcCcccc---hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence 9999988 5557676432 2223333444333 667777777888765544433
No 273
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.82 E-value=0.69 Score=50.47 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++-..+.|...+..+....|+..|.++++..|+....+.+.+.++++.++..++..+++-.... +.+|| ..
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~A--lrln~-------s~ 444 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVA--LRLNP-------SI 444 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhh--ccCCh-------HH
Confidence 4444555555555567778999999999999999999999999999998777666666554322 22232 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
..+|++++.++.+++++.||++.... +...+|.|.
T Consensus 445 ~kah~~la~aL~el~r~~eal~~~~a-lq~~~Ptd~ 479 (758)
T KOG1310|consen 445 QKAHFRLARALNELTRYLEALSCHWA-LQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhHHH-HhhcCchhh
Confidence 46899999999999999999998877 777777544
No 274
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.77 E-value=0.29 Score=31.07 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLEC 428 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~r 428 (565)
.+++.+|.++...|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5778899999999999999988764
No 275
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.76 E-value=1.8 Score=36.57 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHCCCCCchHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 378 KFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 378 ~l~~~g~~~eAi~~l~~AL~~dP~---------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
...+.|++.+|++.+.+..+.... ...+...+|.++...|++++|++.+++|+++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457789999998888888764332 25678899999999999999999999998863
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.69 E-value=9.3 Score=39.58 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC--C---
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH--P--- 439 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP----~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~--P--- 439 (565)
...+...+......|+++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..++.. +..+ +
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhccccccH
Confidence 55678888889999999999999999998663 257888999999999999999999999988722 1111 0
Q ss_pred ----------------C--ChhhhhHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhccCCCCch
Q 008435 440 ----------------T--EPEAIDLLIVASQWSGVACIRQ------EKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 440 ----------------~--~~~~~~~~~~a~~~lG~a~~~~------g~~~eAi~~leraa~~l~P~~~~ 485 (565)
. +.........++..+|.-.... ++.+++.+.|++ +...+|...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~k 293 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLDPSWEK 293 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhChhHHH
Confidence 0 1111122234566677777677 889999999999 5556666554
No 277
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.68 E-value=8.7 Score=41.83 Aligned_cols=152 Identities=14% Similarity=0.039 Sum_probs=98.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHH----------HcCCHHHHHHHHHHHH
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL----------QKGLLEEAVEYLECAI 430 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~----------~~g~~~eA~~~~~rAl 430 (565)
.++..+.|-+..+..-......|+.++-...|++|+.--|-..+-.+..-++|. ...+.+.+.+.|+.++
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555666666555667799999999999999988876554444433333 3468899999999998
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHH
Q 008435 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLI 508 (565)
Q Consensus 431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~A 508 (565)
++. |+. .-.+...|...+.-..++.+...|.+.+-. +.-.+|.+..... |.+.-+.|..+- ...|++-
T Consensus 394 ~lI-----PHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~-AIG~cPK~KlFk~-YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 394 DLI-----PHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGN-AIGKCPKDKLFKG-YIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred hhc-----Ccc---cchHHHHHHHHHHHHHHHcccHHHHHHHHH-HhccCCchhHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 764 431 122223344455555788889999999998 6667887764332 222222333333 7888999
Q ss_pred HhcCCCcHHHHHhh
Q 008435 509 FATSPSIINLLTVS 522 (565)
Q Consensus 509 l~l~P~~~~~l~~~ 522 (565)
++.+|..-..|...
T Consensus 464 le~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 464 LEFSPENCYAWSKY 477 (677)
T ss_pred HhcChHhhHHHHHH
Confidence 99999755444333
No 278
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.66 E-value=3.4 Score=45.91 Aligned_cols=155 Identities=13% Similarity=-0.014 Sum_probs=98.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHH
Q 008435 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEG 468 (565)
Q Consensus 389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eA 468 (565)
-.++-.+++..|.+...|..-+.....+|+.-+|.+||.+|+-.. +|. .++. +...+|.++.+.|...+|
T Consensus 199 ~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~----~~h-~kdi-----~lLSlaTiL~RaG~sadA 268 (886)
T KOG4507|consen 199 GHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFS----SRH-NKDI-----ALLSLATVLHRAGFSADA 268 (886)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC----Ccc-cccc-----hhhhHHHHHHHcccccch
Confidence 345567888999999888888888888999999999999996431 222 2222 345588999999999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhhh--HHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435 469 IAHLERIGNLKEPEEPKSKAHYYD--GLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCF 544 (565)
Q Consensus 469 i~~leraa~~l~P~~~~~~~~~~~--~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (565)
--.+.. |....|..... +|.. ++..++..- ..+|..+.+.+|.+...-++.... -.|.+...+.-++-|
T Consensus 269 ~iILhA-A~~dA~~~t~n--~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~----ISC~~~L~~kleKq~ 341 (886)
T KOG4507|consen 269 AVILHA-ALDDADFFTSN--YYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHA----ISCQQKLEQKLEKQH 341 (886)
T ss_pred hheeeh-hccCCcccccc--ceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 887755 55333333322 2211 111222111 778889999999887766663322 223332223345556
Q ss_pred ccchhHHHHHHHHHhh
Q 008435 545 FGFSVLYVMLVAMLKL 560 (565)
Q Consensus 545 ~~~~~~~~~~~~~~~~ 560 (565)
.++-..+.++-.-||+
T Consensus 342 ~~l~~~~nE~keFqk~ 357 (886)
T KOG4507|consen 342 RSLQRTLNELKEFQKQ 357 (886)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666667777666665
No 279
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.48 E-value=1.4 Score=38.55 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHh
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGL-----------LEEAVEYLECAISK 432 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---~A~~~LG~~~~~~g~-----------~~eA~~~~~rAl~l 432 (565)
+|..++++|++-+|++..+..+...+++. ..+..-|.++.+... .-.|+++|.+++.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 57788999999999999999999999887 667777888765542 14567777777543
No 280
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.39 E-value=0.52 Score=35.68 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++.++.++.++|+|++|..+.++ +...+|++.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~-lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDA-LLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH-HHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHH-HHhhCCCcHHH
Confidence 357799999999999999999999 77799998764
No 281
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.34 E-value=0.2 Score=54.11 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=68.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
|-..|..++..+.-+-..+.+++..+++..|+.-+.+|++.||....+|+..|.+.+..+++.+|...|++...+
T Consensus 27 ysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l----- 101 (476)
T KOG0376|consen 27 YSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL----- 101 (476)
T ss_pred HHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc-----
Confidence 344566666666666778888999999999999999999999999999999999999999999999999999543
Q ss_pred CCCCh
Q 008435 438 HPTEP 442 (565)
Q Consensus 438 ~P~~~ 442 (565)
.|+++
T Consensus 102 ~Pnd~ 106 (476)
T KOG0376|consen 102 APNDP 106 (476)
T ss_pred CcCcH
Confidence 46654
No 282
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.34 E-value=0.7 Score=51.01 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCCCCchHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435 382 KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~ 460 (565)
.|+...|++++++|+...|.. ......|+++...-|-.-+|-..+.+++.++ -.++ ..++.+|.++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-----~sep-------l~~~~~g~~~l 687 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-----SSEP-------LTFLSLGNAYL 687 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-----ccCc-------hHHHhcchhHH
Confidence 578889999999999999965 3457899999999999999999999997653 1111 34677999999
Q ss_pred HcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 461 RQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 461 ~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
.+.+.+.|+++|++ +..++|+++....
T Consensus 688 ~l~~i~~a~~~~~~-a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 688 ALKNISGALEAFRQ-ALKLTTKCPECEN 714 (886)
T ss_pred HHhhhHHHHHHHHH-HHhcCCCChhhHH
Confidence 99999999999999 6678999887654
No 283
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=3.6 Score=42.76 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
.+.-|-.-|+-|+...+|..|+++|.++|+.. .. +++....-|.+.+.|....|+|-.|+.-..+ +...+|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c~------D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~-al~~~P 150 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--CA------DPDLNAVLYTNRAAAQLYLGNYRSALNDCSA-ALKLKP 150 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--CC------CccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 35667778999999999999999999998753 22 2333334577899999999999999999999 777899
Q ss_pred CCchhhh
Q 008435 482 EEPKSKA 488 (565)
Q Consensus 482 ~~~~~~~ 488 (565)
.+.+...
T Consensus 151 ~h~Ka~~ 157 (390)
T KOG0551|consen 151 THLKAYI 157 (390)
T ss_pred chhhhhh
Confidence 8886543
No 284
>PRK10941 hypothetical protein; Provisional
Probab=90.13 E-value=1.3 Score=45.15 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
+-..++=.+|.+.+++++|+.+.++.+.+ +|+++.. +--.|.+|.++|.+..|..-++. ....+|++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~e-------~RDRGll~~qL~c~~~A~~DL~~-fl~~~P~d 248 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPYE-------IRDRGLIYAQLDCEHVALSDLSY-FVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHHH-------HHHHHHHHHHcCCcHHHHHHHHH-HHHhCCCc
Confidence 34566778899999999999999999654 5776521 22279999999999999999999 66689999
Q ss_pred chh
Q 008435 484 PKS 486 (565)
Q Consensus 484 ~~~ 486 (565)
|..
T Consensus 249 p~a 251 (269)
T PRK10941 249 PIS 251 (269)
T ss_pred hhH
Confidence 965
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.10 E-value=6 Score=35.24 Aligned_cols=71 Identities=20% Similarity=0.124 Sum_probs=44.6
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh-HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 403 INALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID-LLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 403 a~A~~~LG~~--~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~-~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
+.+|..|+.. ..+.|-|++|.+.+++|.+.. -..-|.+.=+.+ .....|.+|.-++..+|+|++++..-++
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~s-rtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~ 80 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVS-RTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH-TTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-ccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3456666655 446689999999999997753 111122211111 1223567788899999999999888777
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.00 E-value=4.5 Score=44.27 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~--~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
...-..+|..+-+.|+.+||++.++..++.+|. +-.++++|-.++...++++|+...+.|-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 455567888889999999999999999998876 5779999999999999999998888775
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.62 E-value=7.5 Score=37.00 Aligned_cols=65 Identities=18% Similarity=0.011 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
-.++..+|..|.+.|+.++|+++|.++.+.. .........++.+-.+....|+++....+.+++-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC---------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4688999999999999999999999985421 1112223345555667788999999999999943
No 288
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=12 Score=37.41 Aligned_cols=112 Identities=15% Similarity=0.063 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHC-CCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 371 ELIALSVKFLSK-GDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 371 ~l~~lA~~l~~~-g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
-....|..+... .++++|+.+|++|-+-..+. -..+...+....+.|+|.+|++.|++...-. + .++-
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-~-~n~L--- 189 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-L-DNNL--- 189 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cchH---
Confidence 345566666554 78899999999998755443 3356667777888999999999999986431 1 1110
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
.-...-.-.+..|.|+.-..+.-.+...+++ ...++|.....+.
T Consensus 190 LKys~KdyflkAgLChl~~~D~v~a~~ALek-y~~~dP~F~dsRE 233 (288)
T KOG1586|consen 190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEK-YQELDPAFTDSRE 233 (288)
T ss_pred HHhHHHHHHHHHHHHhHhcccHHHHHHHHHH-HHhcCCcccccHH
Confidence 0000001134478888888888888889999 7778998876544
No 289
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=5.2 Score=44.50 Aligned_cols=105 Identities=21% Similarity=0.118 Sum_probs=79.0
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhhhcCCCCChhhhhHHHHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC-AISKLFLAGHPTEPEAIDLLIVASQ 453 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~r-Al~l~~l~~~P~~~~~~~~~~~a~~ 453 (565)
+...+...++...+.-.++.++..||+++.++.+||......|....+...+.. +.. ..|++.+....... ++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~-~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW-----LSPDNAEFLGHLIR-FY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCcchHHHHhhHHH-HH
Confidence 355556677888899999999999999999999999999988877666655555 532 34555433333333 33
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 454 ~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.+|.....+|+.+++...+++ +..+.|.+++.
T Consensus 147 ~~~~~~~~l~~~~~~~~~l~~-~~d~~p~~~~~ 178 (620)
T COG3914 147 QLGRYLKLLGRTAEAELALER-AVDLLPKYPRV 178 (620)
T ss_pred HHHHHHHHhccHHHHHHHHHH-HHHhhhhhhhh
Confidence 378888999999999999999 66788888754
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=4.1 Score=41.74 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 392 l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+++.+..||+|.++-+.++..+...|+.++|.+++-..++.
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45557789999999999999999999999999998887654
No 291
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.31 E-value=0.82 Score=38.53 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=50.4
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~--a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
..++...+.|.+..+.+|..+...|++++|++.+-.+++.|+++ ..+.-.|=.++...|.-+.-...|+|-
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34555667789999999999999999999999999999999887 555555555666666555555555554
No 292
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.94 E-value=0.9 Score=45.76 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
|+.+|++|+.+.|++...|+.||.++...|+.=+|+-+|-|++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999996
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.93 E-value=1.6 Score=44.57 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
...+.+++..+...|+++.++..+++.+..||.+-.+|..+=..|.+.|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999999999999998553
No 294
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.77 E-value=13 Score=43.47 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
|.-....|+.+....++++|..++.++...-|. .+++....|.+....|++++|++..+.+++.. |
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L-----~ 489 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL-----P 489 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----c
Confidence 555678899999999999999999988775544 35677788999999999999999999998764 2
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+. . ..-..+...+|.+..-.|++++|..+.++ +.
T Consensus 490 ~~~-~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~-a~ 524 (894)
T COG2909 490 EAA-Y-RSRIVALSVLGEAAHIRGELTQALALMQQ-AE 524 (894)
T ss_pred ccc-c-hhhhhhhhhhhHHHHHhchHHHHHHHHHH-HH
Confidence 211 0 11122456689999999999999999988 54
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.46 E-value=7.5 Score=39.64 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=69.2
Q ss_pred HHCCCCCchHHHHHHHHhh----CCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhh-c-CCCCChhhhhHH
Q 008435 380 LSKGDKERPIPLLQLALNK----EPDN----INALILMGQTQLQKG-LLEEAVEYLECAISKLFL-A-GHPTEPEAIDLL 448 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~----dP~~----a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~~l-~-~~P~~~~~~~~~ 448 (565)
..+||.+.|..++.|+-.. +|+. ++.+|+.|.-....+ ++++|..++++|.+.... . .+...++..+..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 5689999999999988554 4554 567888888889999 999999999999886311 0 111112122233
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHhhccCCCCch
Q 008435 449 IVASQWSGVACIRQEKWEE---GIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~e---Ai~~leraa~~l~P~~~~ 485 (565)
...+..++.+|...+.++. |...++. +....|+.+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~-l~~e~~~~~~ 122 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRL-LESEYGNKPE 122 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHhCCCCcH
Confidence 3356678888888777554 4555545 4444555554
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.38 E-value=9.5 Score=38.74 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHC----CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSK----GDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~----g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
+.....++..+... ++..+|..+|+ ...+.+++.+.+.||.+|.. ..+..+|..+|++|.+. +++.
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----g~~~ 146 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----GNVE 146 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----CChh
Confidence 35666777776653 35677899998 56677899999999999987 45899999999999653 2221
Q ss_pred ChhhhhHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------------
Q 008435 441 EPEAIDLLIVASQWSGVACIRQ-----E--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------------ 501 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~-----g--~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------------ 501 (565)
. ..+.+.+|.+|..- - +..+|...|++++... ++ ++...+|..+
T Consensus 147 a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~-------~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 147 A-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NP-------DAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred H-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CH-------HHHHHHHHHHHcCCCCCcCHHH
Confidence 0 12355577766553 2 2347999999966543 22 2223555444
Q ss_pred -HHHHHHHHhcCC
Q 008435 502 -ANITFLIFATSP 513 (565)
Q Consensus 502 -~~~l~~Al~l~P 513 (565)
..+|+++.+...
T Consensus 210 A~~wy~~Aa~~g~ 222 (292)
T COG0790 210 AFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHCCC
Confidence 678888887765
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.37 E-value=33 Score=36.70 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=87.8
Q ss_pred HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---------------------hhcCC
Q 008435 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL---------------------FLAGH 438 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---------------------~l~~~ 438 (565)
...|+.+.|+.+-++|-++.|.-..++...=.-..+.|+|+.|++..+...+.. .++-+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 457999999999999999999999999888888899999999999987664432 11223
Q ss_pred CCChhhhhH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-HHHHHHHH
Q 008435 439 PTEPEAIDL--------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-ANITFLIF 509 (565)
Q Consensus 439 P~~~~~~~~--------~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-~~~l~~Al 509 (565)
|....+... +.-+-...+.++++.|+.-++-..+|.+-. .+|+ |.....|..+...-...- .+-.++..
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-AEPH-PDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-cCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 322111100 011223356788999999999999999544 4444 322222211110000000 56667777
Q ss_pred hcCCCcHHH
Q 008435 510 ATSPSIINL 518 (565)
Q Consensus 510 ~l~P~~~~~ 518 (565)
.+.|++.+-
T Consensus 323 slk~nnaes 331 (531)
T COG3898 323 SLKPNNAES 331 (531)
T ss_pred hcCccchHH
Confidence 788887763
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=4.5 Score=40.44 Aligned_cols=146 Identities=10% Similarity=0.032 Sum_probs=84.5
Q ss_pred hcccchhhhHHhhhhhHHHHHHHHHhcCHHHHhHhCCCCCCCCCCCCCCccccccccCCCCchhhhcCCCCCCCHHHHHH
Q 008435 295 GYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIA 374 (565)
Q Consensus 295 ~~~~Pagl~lYW~~s~~~sl~Q~~~l~~~~~rk~l~ip~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 374 (565)
...+=++-.+|-=.++.|-..|..=-..-.++|.. +-.|.| .....+.-.++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~------------~~yEnn----------------rslfhAAKayE 75 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKAS------------KGYENN----------------RSLFHAAKAYE 75 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHH------------HHHHhc----------------ccHHHHHHHHH
Confidence 34667788888888887777665322222222221 011122 12233444455
Q ss_pred HHHHH-HHCCCCCchHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 375 LSVKF-LSKGDKERPIPLLQLALNKEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 375 lA~~l-~~~g~~~eAi~~l~~AL~~dP~-----~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++..+ .+...+.|+..++++|..+.-. -+-.-...+-=.....++++|++.|++++++. ..+-.+-..
T Consensus 76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv--e~~dr~~ma---- 149 (308)
T KOG1585|consen 76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV--EEDDRDQMA---- 149 (308)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hccchHHHH----
Confidence 55444 4567888899999998876532 22222222223456678999999999998763 111110001
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
..-+...+..+.+.++++||-..+.+
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 11233467788999999999998887
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.04 E-value=4.6 Score=41.07 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCC-HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhh
Q 008435 366 NLTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQK----G---LLEEAVEYLECAISKL 433 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~-a~A~~~LG~~~~~~----g---~~~eA~~~~~rAl~l~ 433 (565)
.-.+...+.+|..+.. ..|..+|..+|++|.+..-.. ..+.+.+|..|..- + +...|...|++|-...
T Consensus 106 ~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 3457788889988876 348889999999999885555 46689999998874 2 2347999999984321
Q ss_pred hhcCCCCChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhc
Q 008435 434 FLAGHPTEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNL 478 (565)
Q Consensus 434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~ 478 (565)
...+.+.+|.+|.. ..++++|..+|++++..
T Consensus 186 --------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 186 --------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred --------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 12456778888755 44889999999996663
No 300
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.85 E-value=1.5 Score=43.23 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCCC-------chHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKE-------RPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~-------eAi~~l~~AL~~dP~------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+..+..+|+.+-..|+.+ +|...|++|++.+.. .....+.+|.++.+.|+++||..+|.+++.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 556778888888888744 456666666654432 368999999999999999999999999975
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.33 E-value=0.98 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.066 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
++..+|.++..+|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 466799999999999999998864
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.29 E-value=1.3 Score=30.48 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
++.++|.+|..+|++++|.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 46679999999999999999999944
No 303
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=19 Score=39.40 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHCC--CCCchHHHHHHHHhhCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKG--DKERPIPLLQLALNKEPDN---INALILMGQTQL-QKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g--~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~-~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
++.+..+|..+...| +..+++++++......|.+ ++.+..||.+++ ...+++.|..++++|..+. ..-|...
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~--~~ip~fy 84 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLIS--KSIPSFY 84 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--cccccHH
Confidence 456777787777778 8889999999999988876 677888998865 5678999999999997653 2223321
Q ss_pred hhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCCc
Q 008435 443 EAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~P~~~ 484 (565)
+....++-.++.+|.... .++.|...+++ +.++....|
T Consensus 85 ---dvKf~a~SlLa~lh~~~~~s~~~~KalLrk-aielsq~~p 123 (629)
T KOG2300|consen 85 ---DVKFQAASLLAHLHHQLAQSFPPAKALLRK-AIELSQSVP 123 (629)
T ss_pred ---hhhhHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHhcCCc
Confidence 223345666888887777 78999999999 655666666
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.00 E-value=2.3 Score=43.65 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 459 ~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
..+.|+.|+|...|+. +..+.|.+|+... .+|.+. -++|-+|+.++|.+.+++..-.+-
T Consensus 126 ~~~~Gk~ekA~~lfeH-AlalaP~~p~~L~-------e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEH-ALALAPTNPQILI-------EMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHH-HHhcCCCCHHHHH-------HHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3688999999999999 7779999997543 445444 578999999999998887555443
No 305
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.91 E-value=23 Score=40.11 Aligned_cols=132 Identities=11% Similarity=0.050 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD------------------NINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~------------------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
+..+|+-|...+...+++.|..++++|...-.+ +...|...+......|-++.-...|++.+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456778888888888999999999988764322 34567778888888888888888999998
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC--CCchhhhhhhhHHHH-HHHH-H---HH
Q 008435 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP--EEPKSKAHYYDGLVV-LARY-V---AN 503 (565)
Q Consensus 431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P--~~~~~~~~~~~~~~~-La~~-l---~~ 503 (565)
++. -.. +....+.|..+.+..-+++|.+.||| ...+.+ .--+.+.-|...++. +|.. + ..
T Consensus 505 dLr----------iaT--Pqii~NyAmfLEeh~yfeesFk~YEr-gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 505 DLR----------IAT--PQIIINYAMFLEEHKYFEESFKAYER-GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHh----------cCC--HHHHHHHHHHHHhhHHHHHHHHHHHc-CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 753 111 12234566777888889999999999 433332 222222222221111 0000 0 67
Q ss_pred HHHHHHhcCC
Q 008435 504 ITFLIFATSP 513 (565)
Q Consensus 504 ~l~~Al~l~P 513 (565)
.|++|++.-|
T Consensus 572 LFEqaL~~Cp 581 (835)
T KOG2047|consen 572 LFEQALDGCP 581 (835)
T ss_pred HHHHHHhcCC
Confidence 7788888766
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.08 E-value=4.6 Score=36.75 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 403 INALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 403 a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
....++++.++.... +..+.+..++..++. ..|.. ..+-.|.++..+++.|+|++|+.+.+. ..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~----~~~~~------rRe~lyYLAvg~yRlkeY~~s~~yvd~-ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS----AHPER------RRECLYYLAVGHYRLKEYSKSLRYVDA-LLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh----cCccc------chhhhhhhHHHHHHHhhHHHHHHHHHH-HHhh
Confidence 445566777766554 457788888888531 22221 123456799999999999999999998 6778
Q ss_pred CCCCchh
Q 008435 480 EPEEPKS 486 (565)
Q Consensus 480 ~P~~~~~ 486 (565)
+|++.++
T Consensus 101 e~~n~Qa 107 (149)
T KOG3364|consen 101 EPNNRQA 107 (149)
T ss_pred CCCcHHH
Confidence 8888754
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.95 E-value=8.9 Score=44.36 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=53.3
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~ 453 (565)
.-|....+.|..++|..+|++.-+.| .|-.+|...|.|+||.+..+.- +.-.+...|+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~--------------DRiHLr~Tyy 862 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETK--------------DRIHLRNTYY 862 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhc--------------cceehhhhHH
Confidence 44455566677777777777665543 4556667777777776654332 2223345678
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 008435 454 WSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 454 ~lG~a~~~~g~~~eAi~~ler 474 (565)
+.+.-+...++.+.|+++||+
T Consensus 863 ~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHh
Confidence 888888899999999999999
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.75 E-value=3.7 Score=47.30 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHH----------HhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLA----------LNKEPD----------NINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~A----------L~~dP~----------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
.+++.|..+...+|.+.|+.+|+++ |..+|. +...|-+-|+.....|+.|.|+.+|+.|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4788888888889999999999865 666665 45567788999999999999999999993
Q ss_pred Hhhh------hcCCCCChhhh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 431 SKLF------LAGHPTEPEAI---DLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 431 ~l~~------l~~~P~~~~~~---~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.--. ..++-+.+... .....|-|.+|.-|...|+..+|+..|.|
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3210 12222111000 01112677899999999999999999988
No 309
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.74 E-value=9.8 Score=38.79 Aligned_cols=84 Identities=21% Similarity=0.191 Sum_probs=56.4
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccC------CCCchh
Q 008435 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKE------PEEPKS 486 (565)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~------P~~~~~ 486 (565)
..+|+.+.|..+|.|+-... ...+|+ .........|+.|......+ ++++|..+++++...++ ...+..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~---~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPD---MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcH---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 47899999999999994432 133333 33455567899999999999 99999999999555421 223333
Q ss_pred hhhhhhHHHHHHHHH
Q 008435 487 KAHYYDGLVVLARYV 501 (565)
Q Consensus 487 ~~~~~~~~~~La~~l 501 (565)
.......+..++..+
T Consensus 80 ~elr~~iL~~La~~~ 94 (278)
T PF08631_consen 80 SELRLSILRLLANAY 94 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555566555
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.68 E-value=13 Score=34.44 Aligned_cols=97 Identities=16% Similarity=0.064 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
++...-.+....++.+++...+... . .+.|+.++ . ...-|..+...|+++||+..|++ .....+..|
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdAL-r----vLrP~~~e-~------d~~dg~l~i~rg~w~eA~rvlr~-l~~~~~~~p 78 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDAL-R----VLRPNLKE-L------DMFDGWLLIARGNYDEAARILRE-LLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-H----HhCCCccc-c------chhHHHHHHHcCCHHHHHHHHHh-hhccCCCch
Confidence 3444445555688999998877655 2 34576552 2 22368889999999999999999 554444444
Q ss_pred hhhhhhhhHHHHHHHHH-HHHHHHHHhcCCC
Q 008435 485 KSKAHYYDGLVVLARYV-ANITFLIFATSPS 514 (565)
Q Consensus 485 ~~~~~~~~~~~~La~~l-~~~l~~Al~l~P~ 514 (565)
-.+..+...+..++..- ..+..++++.+++
T Consensus 79 ~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~ 109 (153)
T TIGR02561 79 YGKALLALCLNAKGDAEWHVHADEVLARDAD 109 (153)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Confidence 33332211221222111 6666666666443
No 311
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.18 E-value=22 Score=40.24 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh---
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--- 443 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~--- 443 (565)
-.+..|..+-..|+.+.|...|++|...+=.. +..|..-|..-.+..+++.|....++|... |..+.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v------P~~~~~~~ 462 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV------PTNPELEY 462 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC------CCchhhhh
Confidence 36788989999999999999999999976443 678888888888999999999999999642 33211
Q ss_pred --hhh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435 444 --AID-------LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANIT 505 (565)
Q Consensus 444 --~~~-------~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l 505 (565)
+.. .....|..++......|-++.-...|+++.. +-=..|+... +.|.++ .+.|
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid-LriaTPqii~-------NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID-LRIATPQIII-------NYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCHHHHH-------HHHHHHHhhHHHHHHHHHH
Confidence 000 0112344566777888899999999999443 3324444322 444444 4556
Q ss_pred HHHHhcC--CCcHHHH-------------HhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435 506 FLIFATS--PSIINLL-------------TVSNIIDIIYVNCYELKKKRFASCF 544 (565)
Q Consensus 506 ~~Al~l~--P~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (565)
++-+.+- |..-++| ...|++.++++.|.+.-+.-|++-.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6666655 3444444 2235666777766664444444433
No 312
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.42 E-value=8 Score=41.25 Aligned_cols=110 Identities=20% Similarity=0.107 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHH---------CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hhhh
Q 008435 365 ENLTPKELIALSVKFLS---------KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI-SKLF 434 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~---------~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl-~l~~ 434 (565)
++.+++.++..|..+-. ....++|+..|+++.+.+|+. ..=.+++.++...|+..+...-.++.. .+..
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSS 291 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 34568888888887643 124678999999999999655 444667777777776544443344432 2211
Q ss_pred hcCCCCChh-hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 435 LAGHPTEPE-AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 435 l~~~P~~~~-~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+.+.-...+ ..+. ..+..++.+..-.|++++|+++++++..
T Consensus 292 llg~kg~~~~~~dY--Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 292 LLGRKGSLEKMQDY--WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHhhccccccccH--HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 111111110 1111 1223366777889999999999999444
No 313
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.38 E-value=26 Score=38.98 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=65.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.+++...|.|.+.++.+-..+..+ .+++....|++.+...|..+++|..-..-.....+|+.-+..|.|.+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 567888888999998887666555 9999999999999999999999999999999999999999999999764
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.28 E-value=3.9 Score=44.15 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
...+.|.=++..|+|.++.-+-.-..+++| +++++-.+|.+.+...+|+||.+++...
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345667778899999999999999999999 9999999999999999999999999877
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.00 E-value=5.8 Score=44.73 Aligned_cols=93 Identities=19% Similarity=0.113 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHCC-----CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 371 ELIALSVKFLSKG-----DKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 371 ~l~~lA~~l~~~g-----~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
..+.+|..+.+.. +.+.|..++.+|-+.+ ++++.+.+|.++..-. +...|.++|.+|....
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--------- 358 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--------- 358 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---------
Confidence 5667888887754 5566999999887765 5567789999988665 5789999999995321
Q ss_pred hhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcc
Q 008435 443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l 479 (565)
...+.++++.||.. .-+.++|..++++++..-
T Consensus 359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 12467788888754 357899999999976643
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.96 E-value=24 Score=36.88 Aligned_cols=74 Identities=16% Similarity=0.027 Sum_probs=53.5
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCC------------CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKG------------DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL 426 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g------------~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~ 426 (565)
.+++...|-|.+..+++....-..- -.+..+..|++||+.+|++...+..+=.+..+..+.++..+-+
T Consensus 9 ~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555556666776666654433221 1345688999999999999998888777777887888888899
Q ss_pred HHHHHh
Q 008435 427 ECAISK 432 (565)
Q Consensus 427 ~rAl~l 432 (565)
++++..
T Consensus 89 e~~l~~ 94 (321)
T PF08424_consen 89 EELLFK 94 (321)
T ss_pred HHHHHH
Confidence 999654
No 317
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.58 E-value=16 Score=40.07 Aligned_cols=93 Identities=24% Similarity=0.308 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHH
Q 008435 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEG 468 (565)
Q Consensus 389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eA 468 (565)
...|++|+...++|...|...-..-.+.+.+.+-...|.+++.. +|+++ +....+..| -+...-+.+.|
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-----Hp~~~---dLWI~aA~w---efe~n~ni~sa 159 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-----HPNNP---DLWIYAAKW---EFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCc---hhHHhhhhh---HHhhccchHHH
Confidence 45677777777777777776665555556677777777777543 45544 221111111 12333337777
Q ss_pred HHHHHHHhhccCCCCchhhhhhhhH
Q 008435 469 IAHLERIGNLKEPEEPKSKAHYYDG 493 (565)
Q Consensus 469 i~~leraa~~l~P~~~~~~~~~~~~ 493 (565)
.+.|.+ ..+.+|+.|..+..|++-
T Consensus 160 Ralflr-gLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 160 RALFLR-GLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHHH-HhhcCCCChHHHHHHHHH
Confidence 777777 667777777665555443
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.46 E-value=8.9 Score=32.23 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
..+.|++.+|.+.+.+..+.. ..-.+.........+..+++..+...|++++|++.+++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~---~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYA---KQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHH---hhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 457899999999999986542 1111110011234567789999999999999999999943
No 319
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.44 E-value=18 Score=39.52 Aligned_cols=160 Identities=17% Similarity=0.142 Sum_probs=97.7
Q ss_pred ccchhhhHHhhhh-hHHHHHHHHHhcCHHHHhHhCCCCCCCCCCCCCCccccccccCCCCchhhhcCCCCCCCHHHHHH-
Q 008435 297 YIPQGSLVYWVTN-SSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIA- 374 (565)
Q Consensus 297 ~~Pagl~lYW~~s-~~~sl~Q~~~l~~~~~rk~l~ip~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~- 374 (565)
--|+...+-|+.. .+..++|-...++-.+..++..-.+..-.+=.+ +-...+..+.+|-- ++--..+.+
T Consensus 258 gsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q--~eklkq~d~~sril-------sm~km~~LE~ 328 (629)
T KOG2300|consen 258 GSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ--TEKLKQADLMSRIL-------SMFKMILLEH 328 (629)
T ss_pred CCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH--HhhcccccchhHHH-------HHHHHHHHHH
Confidence 3588889999998 999999998888765555543322210000000 00000111111100 000111122
Q ss_pred HHHHHHHCCCCCchHHHHHHHHh---hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 375 LSVKFLSKGDKERPIPLLQLALN---KEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~---~dP~-------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.+..-+-.|++.+|+.....+.+ ..|. .+..++.+|.--..-+.+++|+.+|..|+++. +.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t---------~~ 399 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT---------ES 399 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh---------hH
Confidence 22223458999999988887766 4455 45678888888788889999999999998763 12
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.+.......+++..|.+.|+-+.-.+.++.
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~ 429 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDL 429 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHh
Confidence 333334556799999999998877777666
No 320
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.37 E-value=2.5 Score=29.63 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
++|..||.+-...++|++|++-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998763
No 321
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=81.27 E-value=22 Score=39.83 Aligned_cols=124 Identities=17% Similarity=0.043 Sum_probs=84.9
Q ss_pred CCCCchHHHHHHHHhhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008435 383 GDKERPIPLLQLALNKEPDNINALILM--GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (565)
Q Consensus 383 g~~~eAi~~l~~AL~~dP~~a~A~~~L--G~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~ 460 (565)
|...-++..+..-+..+|.+.+.+... ...+...+..+.+.-..+.++.. ||.++ .++.++|.+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~-----~~~~~-------~~~~~L~~ale 112 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV-----NPENC-------PAVQNLAAALE 112 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc-----Ccccc-------hHHHHHHHHHH
Confidence 333447777777788999998875444 66777778888888888888543 45443 35667888888
Q ss_pred HcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435 461 RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 461 ~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l 519 (565)
..|....+...+...+....|++.....+....+- +++.. ...+++++.+.|.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 113 LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 88888888777777678888888865443322211 33222 677788888888876543
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.87 E-value=21 Score=37.34 Aligned_cols=92 Identities=20% Similarity=0.098 Sum_probs=63.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHH
Q 008435 389 IPLLQLALNKEPDNINALILMGQTQLQKGL------------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (565)
Q Consensus 389 i~~l~~AL~~dP~~a~A~~~LG~~~~~~g~------------~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG 456 (565)
..-|++.++.+|+|.++|..+.......-. .+.-+..|+||++. +|++. .+ +..+-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~----~L---~l~~l 72 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSE----RL---LLGYL 72 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCH----HH---HHHHH
Confidence 356889999999999999999988765533 35567778888653 56433 11 11122
Q ss_pred HHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH
Q 008435 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493 (565)
Q Consensus 457 ~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~ 493 (565)
.+..+..+-++..+-+++ +...+|+++..+..|.+.
T Consensus 73 ~~~~~~~~~~~l~~~we~-~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 73 EEGEKVWDSEKLAKKWEE-LLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHhCCHHHHHHHHHH-HHHHCCCChHHHHHHHHH
Confidence 344566788888888999 566788888776655443
No 323
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.46 E-value=2.3 Score=29.41 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 008435 404 NALILMGQTQLQKGLLEEAVEYL 426 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~ 426 (565)
+.++.+|..+.+.|++++|++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHH
Confidence 44566666666666666666663
No 324
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.24 E-value=3.9 Score=44.54 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=70.0
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH-HHHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL-LIVASQ 453 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~-~~~a~~ 453 (565)
....+++..+..-+..-.+.+....-+.+.+.+..++.++..|++..|.+.+... .+ ...|..-.-+.. .-..+.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni---~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NI---HKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-cc---ccccCccccchhhhheeec
Confidence 3344567777777888888888888899999999999999999999998877654 10 011110000011 112456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Q 008435 454 WSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 454 ~lG~a~~~~g~~~eAi~~leraa 476 (565)
++|.++++.|.|..+..+|.++.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHH
Confidence 79999999999999999999944
No 325
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.27 E-value=3.1 Score=38.14 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL 419 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~ 419 (565)
.++.....|...+..|++.-|..+.+.++..||+|.++....+.++.+.|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999999999999999988887743
No 326
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.13 E-value=3.1 Score=41.17 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 411 QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 411 ~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+...+.++.+.|.+.|.+|+++. |+. ..-|+.+|....+.|+++.|.+.|++ ..+++|+|..
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-----p~w-------~~gwfR~g~~~ekag~~daAa~a~~~-~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-----PEW-------AAGWFRLGEYTEKAGEFDAAAAAYEE-VLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-----chh-------hhhhhhcchhhhhcccHHHHHHHHHH-HHcCCccccc
Confidence 34557789999999999997642 321 13477899999999999999999999 6678888764
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.15 E-value=5.2 Score=40.99 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=47.0
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-+..+...|.+.+|+.+.++++.+||-+-..|..+=.++...|+--+|..+|++--+.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 4555677888888888888888888888888888888888888888888888876433
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.00 E-value=27 Score=38.20 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
-+.+..+-.......|+...|-..+..+|+..|+++.-....+.+....|+|+.|.....-+-... ...+
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~------ 357 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----GTTD------ 357 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCc------
Confidence 445555555666889999999999999999999999999999999999999999887775552211 0000
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.+..-+-.....+|++++|...-+-
T Consensus 358 --~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 358 --STLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred --hHHHHHHHhhhchhhHHHHHHHHHH
Confidence 0111233345667777777776655
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.79 E-value=12 Score=30.78 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.-+..-|.=++...+.++|+..+++|++.. ++ .+.-..+..++..+|+..|+|.+.+++--+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TD----REDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666778889999999999998763 22 112234677788899999999999886544
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.53 E-value=16 Score=41.02 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc-CC--CCChh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA-GH--PTEPE 443 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~-~~--P~~~~ 443 (565)
.|++..++++ ++.|+++.|.++ ..+.++..=|-.||.+....|++..|.+++.+|-....|. +. -.+.+
T Consensus 638 ~D~d~rFela---l~lgrl~iA~~l-----a~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 638 TDPDQRFELA---LKLGRLDIAFDL-----AVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE 709 (794)
T ss_pred CChhhhhhhh---hhcCcHHHHHHH-----HHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh
Confidence 3566777776 678898888774 4556788889999999999999999999999995442110 00 01111
Q ss_pred hhhHH-----HHHHHHHH-HHHHHcCCHHHHHHHHHHHhh
Q 008435 444 AIDLL-----IVASQWSG-VACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 444 ~~~~~-----~~a~~~lG-~a~~~~g~~~eAi~~leraa~ 477 (565)
....+ ..-..+++ .+|...|+++++.+.+.+ ..
T Consensus 710 ~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~-t~ 748 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS-TQ 748 (794)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh-cC
Confidence 00000 00112222 478899999999999988 44
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.15 E-value=46 Score=31.85 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPD--N--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~--~--a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
-..++.|....++|+..+|+..|..+-...|- - --|...-+.++...|-|++-....+..- -.++|-
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa----~d~n~m----- 165 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA----GDGNPM----- 165 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc----CCCChh-----
Confidence 35677888899999999999999988765542 1 3456777888889999988666554431 122221
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
-..+...||.+-.+.|++++|..+|++++.
T Consensus 166 --R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 --RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred --HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 112455699999999999999999999554
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.23 E-value=11 Score=41.32 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
|++..+++| ++.|+.+.|.+ +...-++..-|-.||.....+|+++-|+++|+++
T Consensus 320 D~~~rFeLA---l~lg~L~~A~~-----~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 320 DPDHRFELA---LQLGNLDIALE-----IAKELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp -HHHHHHHH---HHCT-HHHHHH-----HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred ChHHHhHHH---HhcCCHHHHHH-----HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 566777776 67788777766 3445568889999999999999999999999988
No 333
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.13 E-value=4.2 Score=41.24 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
..+.+.++++.|....++.+.++|+++.-+--.|.+|.+.|-+.-|++-++..++..
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 346778999999999999999999999999999999999999999999999987653
No 334
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.84 E-value=52 Score=39.36 Aligned_cols=133 Identities=21% Similarity=0.171 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
=+.+..|..+|.+..+.|...+|++.|-|| .||. .|...-.+..+.|.||+-+.++.- +...
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps----------~y~eVi~~a~~~~~~edLv~yL~M-aRkk 1162 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPS----------NYLEVIDVASRTGKYEDLVKYLLM-ARKK 1162 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcH----------HHHHHHHHHHhcCcHHHHHHHHHH-HHHh
Confidence 356889999999999999999999999999 1221 233344567899999999999876 4322
Q ss_pred CCCCchhhhhhhhHHHHHHHHH-HHHHHHHHhcCCCcHHHHHhhhhhhHHHhh-hhhhhhhh--hhhhhccchhHHHHHH
Q 008435 480 EPEEPKSKAHYYDGLVVLARYV-ANITFLIFATSPSIINLLTVSNIIDIIYVN-CYELKKKR--FASCFFGFSVLYVMLV 555 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~~~La~~l-~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 555 (565)
-+.|...... ..+++..- ...++.- -..|+.+.+..- .|.+++. .|+++|-= +.+-|.-|.+-++-||
T Consensus 1163 -~~E~~id~eL---i~AyAkt~rl~elE~f-i~gpN~A~i~~v---Gdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1163 -VREPYIDSEL---IFAYAKTNRLTELEEF-IAGPNVANIQQV---GDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred -hcCccchHHH---HHHHHHhchHHHHHHH-hcCCCchhHHHH---hHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1223222111 11222211 3333332 244666554221 2344443 36666632 2333555555556555
Q ss_pred HHH
Q 008435 556 AML 558 (565)
Q Consensus 556 ~~~ 558 (565)
+-|
T Consensus 1235 eyQ 1237 (1666)
T KOG0985|consen 1235 EYQ 1237 (1666)
T ss_pred HHH
Confidence 543
No 335
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.47 E-value=5.5 Score=42.89 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=75.4
Q ss_pred HhhhhhHHHHHHHHHhcCHHHHhHhCCCCCCCCCCCCCCccccccccCCCCchhhhcCCCCCCCHHHHHHHHHHHHHCCC
Q 008435 305 YWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGD 384 (565)
Q Consensus 305 YW~~s~~~sl~Q~~~l~~~~~rk~l~ip~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~lA~~l~~~g~ 384 (565)
.|-+.+++.++|+++-++......-.......|...+.+.. .+|.+ +. +.--.++.+...+.-.||
T Consensus 72 ~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g--------~~~l~-~~-----LGYFSligLlRvh~LLGD 137 (404)
T PF10255_consen 72 VWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYG--------SSPLY-KM-----LGYFSLIGLLRVHCLLGD 137 (404)
T ss_pred cccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccc--------cccHH-HH-----hhHHHHHHHHHHHHhccC
Confidence 58888889999988887765554443333333333222221 11111 00 112345677788889999
Q ss_pred CCchHHHHHHH-------Hh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 385 KERPIPLLQLA-------LN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 385 ~~eAi~~l~~A-------L~-~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
|..|++.++.. .. .-+-+...+|..|.+|+..++|.+|+..|...+.-
T Consensus 138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987643 11 23446788999999999999999999999998643
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.11 E-value=31 Score=34.48 Aligned_cols=83 Identities=19% Similarity=0.061 Sum_probs=56.6
Q ss_pred CchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435 386 ERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~ 459 (565)
...++++++|.+...+. ......+|..|+..|++++|++.|+++...- . .+ ............+..|+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y--r---~e-gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSY--R---RE-GWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--H---hC-CcHHHHHHHHHHHHHHH
Confidence 34577777777654432 4456789999999999999999999995431 0 00 02223333455678899
Q ss_pred HHcCCHHHHHHHHHH
Q 008435 460 IRQEKWEEGIAHLER 474 (565)
Q Consensus 460 ~~~g~~~eAi~~ler 474 (565)
.+.|+.++.+..--+
T Consensus 229 ~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLE 243 (247)
T ss_pred HHhCCHHHHHHHHHH
Confidence 999999988876544
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.86 E-value=9.6 Score=37.05 Aligned_cols=56 Identities=27% Similarity=0.212 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVE 424 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~----~a~A~~~LG~~~~~~g~~~eA~~ 424 (565)
+++-.+.+|.-+ .+.|.++|+.++.++|++.+. |++.+..|+.++..+|++++|--
T Consensus 140 t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 140 TAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 577777887544 588999999999999997655 49999999999999999998853
No 338
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.59 E-value=63 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=29.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 396 L~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
.+.-|++.+.+-.+|..+...|.-++|.++|-|-
T Consensus 845 a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 845 ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 4445999999999999999999999999988664
No 339
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=54 Score=33.36 Aligned_cols=142 Identities=15% Similarity=0.038 Sum_probs=84.4
Q ss_pred HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh--------------hhcCCCCChh--
Q 008435 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKL--------------FLAGHPTEPE-- 443 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~--------------~l~~~P~~~~-- 443 (565)
...+-++|+++.+.+|.++|.|..+|...-.++...+ +..+=++++.+.++-. .+.++|..-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 4557778999999999999999999999888888776 4566677777776542 1222332100
Q ss_pred -------hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH-H-----HHHH--HHHHHHH
Q 008435 444 -------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV-L-----ARYV--ANITFLI 508 (565)
Q Consensus 444 -------~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~-L-----a~~l--~~~l~~A 508 (565)
++.....|+...-.++...+.++.-+++-.++++...-++. ++.+.+-.+.. . +... ..+..+.
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS-AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS-AWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc-hhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 00111124555556666667777777766664332222221 12111000000 0 1111 6788888
Q ss_pred HhcCCCcHHHHHhhh
Q 008435 509 FATSPSIINLLTVSN 523 (565)
Q Consensus 509 l~l~P~~~~~l~~~~ 523 (565)
+.+.|++..+|.-..
T Consensus 214 I~~vP~NeSaWnYL~ 228 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLK 228 (318)
T ss_pred HHhCCCCccHHHHHH
Confidence 889999998888874
No 340
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.46 E-value=44 Score=35.58 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=72.1
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------------C------------CCC---HHHHHH
Q 008435 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNK--------------E------------PDN---INALIL 408 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------------d------------P~~---a~A~~~ 408 (565)
-..-+...|-..+.+++.+..+..+|+.+.|-+++++||-. + +.| -.+.+.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 34444556777899999999999999999999999998531 1 122 335666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 409 LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~-~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
....+.++|-+..|.++.+-. +.+||. ||- -+.+.+-....+.++|+--++.++.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlL-----lsLdp~~DP~------g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLL-----LSLDPDEDPL------GVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHH-----HhcCCCCCcc------hhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 677788999999999987666 445676 441 1233333444566666666665555
No 341
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=72.05 E-value=28 Score=30.55 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=42.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCchh-hhhhhhHHH--HHHHHH-------------HHHHHHHHhcCCCcHHHH
Q 008435 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYDGLV--VLARYV-------------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 456 G~a~~~~g~~~eAi~~leraa~~l~P~~~~~-~~~~~~~~~--~La~~l-------------~~~l~~Al~l~P~~~~~l 519 (565)
+.-+...|++-+|++..|. .....+++... ..+..+|.+ .++... ++++.++..+.|.-+..+
T Consensus 3 A~~~~~rGnhiKAL~iied-~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIED-LISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHHccCHHHHHHHHHH-HHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 3456788999999999998 44455555432 223333332 233222 789999999999886655
Q ss_pred Hhhhh
Q 008435 520 TVSNI 524 (565)
Q Consensus 520 ~~~~~ 524 (565)
-+...
T Consensus 82 ~~la~ 86 (111)
T PF04781_consen 82 FELAS 86 (111)
T ss_pred HHHHH
Confidence 55443
No 342
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.30 E-value=1.8e+02 Score=32.77 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=92.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC-------------CChhhhhHHHHHHHHHHHHHHHc
Q 008435 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP-------------TEPEAIDLLIVASQWSGVACIRQ 462 (565)
Q Consensus 396 L~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P-------------~~~~~~~~~~~a~~~lG~a~~~~ 462 (565)
|.-.|.+.+.+..++.+...+|+.+-|.+..+|++=...-...| ..+++. .+..+.+..-..+.+.
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR-~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENR-QFYLALFRYMQSLAQR 355 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhH-HHHHHHHHHHHHHHhc
Confidence 44558999999999999999999988888888885321001111 111111 1122333344456789
Q ss_pred CCHHHHHHHHHHHhhccCCC-CchhhhhhhhHHHHHHHHH---HHHHHHH-----HhcCCCcHH--HHHhhhhhhHHHhh
Q 008435 463 EKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLARYV---ANITFLI-----FATSPSIIN--LLTVSNIIDIIYVN 531 (565)
Q Consensus 463 g~~~eAi~~leraa~~l~P~-~~~~~~~~~~~~~~La~~l---~~~l~~A-----l~l~P~~~~--~l~~~~~~~~~~~~ 531 (565)
|.+.-|.++.+- +..++|. ||-.-....+.+...+.-| ++.++.. +..-|++.- +++...-..+.-+.
T Consensus 356 GC~rTA~E~cKl-llsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 356 GCWRTALEWCKL-LLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDD 434 (665)
T ss_pred CChHHHHHHHHH-HhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhh
Confidence 999999999877 7779998 8866554555544444444 3333332 334465431 22111100000001
Q ss_pred hhhhhhhhhhhhhccchhHHHHHHHHHhhh
Q 008435 532 CYELKKKRFASCFFGFSVLYVMLVAMLKLR 561 (565)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (565)
...+... +..|..-+..|..+|.+-+-++
T Consensus 435 rqsa~~~-l~qAl~~~P~vl~eLld~~~l~ 463 (665)
T KOG2422|consen 435 RQSALNA-LLQALKHHPLVLSELLDELLLG 463 (665)
T ss_pred HHHHHHH-HHHHHHhCcHHHHHHHHhccCC
Confidence 1111112 5567777777888888766554
No 343
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.09 E-value=6.4 Score=25.10 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCCchHHHHHHHHhhCCCCHHHHHHHHHH
Q 008435 383 GDKERPIPLLQLALNKEPDNINALILMGQT 412 (565)
Q Consensus 383 g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~ 412 (565)
|+.++|...|++++...|++...|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467789999999999999999999887654
No 344
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.12 E-value=10 Score=26.18 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHhhccCCC
Q 008435 452 SQWSGVACIRQEKWEEGIAHLE--RIGNLKEPE 482 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~le--raa~~l~P~ 482 (565)
++.+|..+..+|++++|++.|+ - +..+++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~-l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAF-LCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH-HHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-HHHhccc
Confidence 5568889999999999999954 5 4445544
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=69.78 E-value=36 Score=40.76 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQK----G---LLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~----g---~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
.-..+++..+.|++|+..|++.-.-.|+- -+|.+..|.....+ | .+++|+.-|++.- +.|..|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~- 552 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH------GGVGAP- 552 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc------CCCCCc-
Confidence 33455778889999999999999999875 56888889887654 2 4677777777662 122222
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.-|.+-+.+|.++|+++|-++.|+- +...-|++|..
T Consensus 553 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 588 (932)
T PRK13184 553 ------LEYLGKALVYQRLGEYNEEIKSLLL-ALKRYSQHPEI 588 (932)
T ss_pred ------hHHHhHHHHHHHhhhHHHHHHHHHH-HHHhcCCCCcc
Confidence 2355567789999999999999999 66677888853
No 346
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=68.54 E-value=17 Score=36.90 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
..++=..+.+.++++.|..+.++.+. .+|.++.+.. -.|.+|.++|.+.-|++.++. ..+..|+++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~-----l~P~dp~eir-------DrGliY~ql~c~~vAl~dl~~-~~~~~P~~~~ 250 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLD-----LNPEDPYEIR-------DRGLIYAQLGCYHVALEDLSY-FVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHh-----hCCCChhhcc-------CcHHHHHhcCCchhhHHHHHH-HHHhCCCchH
Confidence 34455668889999999999999954 4676653221 268999999999999999999 6668889885
Q ss_pred h
Q 008435 486 S 486 (565)
Q Consensus 486 ~ 486 (565)
.
T Consensus 251 a 251 (269)
T COG2912 251 A 251 (269)
T ss_pred H
Confidence 4
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.48 E-value=78 Score=35.60 Aligned_cols=98 Identities=15% Similarity=0.016 Sum_probs=73.2
Q ss_pred HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008435 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (565)
Q Consensus 376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~l 455 (565)
..-....|+++...-.|++++.--..+.+.|..........|+.+-|...+.++.+.. -++.+ ..+..-
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~----~k~~~-------~i~L~~ 372 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH----VKKTP-------IIHLLE 372 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc----CCCCc-------HHHHHH
Confidence 3334568999999999999999999999999999999999999999998888886542 11111 123334
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 456 G~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+.....+|+++.|..+|++...+. |..-.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~ 401 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY-PGLVE 401 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC-Cchhh
Confidence 455677889999999999955544 66443
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.05 E-value=19 Score=38.85 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC--hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE--PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~--~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+...|-+++.-.|+|..|++..+-. ++ +... ..-+.-....+|..|.+|..+++|.+|+..|...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl-----~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DL-----NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Cc-----ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788899999999887655 11 1110 001112223688899999999999999999998543
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=67.21 E-value=64 Score=33.27 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=51.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
........|...+.+....|+++.|..++.++... ++..... ...+.+..+..+...|+.++|+..+++...
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-----~~~~~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQL-----NPSSESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-----CCcccCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36677889999999999999999999999998432 2111000 112333456778899999999999988544
No 350
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=66.78 E-value=4.9 Score=29.37 Aligned_cols=17 Identities=41% Similarity=0.387 Sum_probs=10.3
Q ss_pred ChhHHHHHHHhhhcccc
Q 008435 1 MATAKLLLLQLRRCSYY 17 (565)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (565)
||++|+|-+.||=++++
T Consensus 1 MASRR~lSSlLRSssrr 17 (49)
T PF11421_consen 1 MASRRLLSSLLRSSSRR 17 (49)
T ss_dssp ---SHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHhcc
Confidence 89999887777766554
No 351
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=66.64 E-value=22 Score=38.29 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=43.9
Q ss_pred HHcCCHHHHHHHHHHHHHhh---hhcCCCCChhhhhHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435 414 LQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLIV---ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (565)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~l~---~l~~~P~~~~~~~~~~~---a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~ 487 (565)
+++++|..|..-|+.|+++. ....+|..+...+.... .--.+..||.+.++.+-|+.+--| ...+||.++..+
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr-sI~lnP~~frnH 265 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR-SINLNPSYFRNH 265 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh-hhhcCcchhhHH
Confidence 34444444444444444432 13344544332222222 223488899999999999999999 667899888654
Q ss_pred h
Q 008435 488 A 488 (565)
Q Consensus 488 ~ 488 (565)
.
T Consensus 266 L 266 (569)
T PF15015_consen 266 L 266 (569)
T ss_pred H
Confidence 3
No 352
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.31 E-value=6.7 Score=31.94 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.++|+.++++|+..| ..|++++|+++|..|++..
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHHH
Confidence 346777777776554 6789999999999998764
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.50 E-value=23 Score=39.97 Aligned_cols=66 Identities=5% Similarity=0.125 Sum_probs=34.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+++..+|..++++|+..+.-. |+|..+.+ +....-.+..||..+.+.|.|.+++++ +++.+|+.+-
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i-----~~D~~~~~-FaK~qR~l~~CYL~L~QLD~A~E~~~E-AE~~d~~~~l 429 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDI-----ISDNYSDR-FAKIQRALQVCYLKLEQLDNAVEVYQE-AEEVDRQSPL 429 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cchhhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHHH-HHhhccccHH
Confidence 445556666666666664321 32221111 122333456666666666666666666 5555555543
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.53 E-value=45 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=50.9
Q ss_pred HHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 376 A~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
...+++.+..++|+...+.-++.+|.++...+.+=+++.-.|+|++|...++-+-.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 456788899999999999999999999999999999999999999999888777443
No 355
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.23 E-value=9.6 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=22.7
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.|+.+.++|++.| ..|++++|+.+|..|++..
T Consensus 5 ~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHHHH
Confidence 3555566665554 6788999999998887653
No 356
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.88 E-value=44 Score=30.58 Aligned_cols=73 Identities=11% Similarity=0.231 Sum_probs=57.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGD---KERPIPLLQLALN-KEPDN-INALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~-~dP~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.++..-...+.+..+.+|+.+....+ ..+.+.+++..++ ..|.. -+-.|.|+.-+++.++|++|+.+.+..++
T Consensus 22 ~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 22 LRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444446678889999999987664 4468999999997 55643 56788899999999999999999988854
No 357
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.84 E-value=26 Score=35.52 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=50.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 008435 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE-EAVEYLECAIS 431 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~-eA~~~~~rAl~ 431 (565)
-++.|.+-+...+-.....++ ..+..+-++++.+.++.+|+|...|+..-.+....|++. .=++..++++.
T Consensus 70 i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 70 IRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 345566666666654444333 234667788889999999999999999988888888877 66666667754
No 358
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.41 E-value=26 Score=39.60 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+...|..+.+.++|..+++.|+..+..-|.| +...-.|..+|....+.|.|.++++.|-+. +|.++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-----d~~~~--- 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-----DRQSP--- 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-----ccccH---
Confidence 5677888899999999999999999877654 567778899999999999999999999432 23322
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
......-.+....|.-++|+....+
T Consensus 429 ----l~q~~~~~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 429 ----LCQLLMLQSFLAEDKSEEALTCLQK 453 (872)
T ss_pred ----HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1122233455667778888887776
No 359
>COG1422 Predicted membrane protein [Function unknown]
Probab=63.21 E-value=18 Score=34.90 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 008435 123 WTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRLPPPFPP 164 (565)
Q Consensus 123 ~~aIil~ti~vRl~l-lPl~i~~~~~~~k~~~l~P~l~~i~~~ 164 (565)
-++|.++++++=+.+ ++ -+-.-...||+++|.++++.|++
T Consensus 47 ~lvilV~avi~gl~~~i~--~~~liD~ekm~~~qk~m~efq~e 87 (201)
T COG1422 47 HLVILVAAVITGLYITIL--QKLLIDQEKMKELQKMMKEFQKE 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHH
Confidence 345555555544432 21 11122445555555555555543
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=62.99 E-value=51 Score=33.83 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+..++..++..+...|+++.+++.+++.+.. +|.+. .+|..+-.+|...|+...|+..|+++..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-----dp~~E-------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL-----DPYDE-------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----Cccch-------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 46778999999999999999999999999654 45432 2466677899999999999999999443
No 361
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.95 E-value=14 Score=30.05 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLAL 396 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL 396 (565)
+..+...|+.+-..|++++|+.+|+.++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445555666666666665555555443
No 362
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.36 E-value=41 Score=38.74 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCC
Q 008435 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~ 464 (565)
.++|...++++... ..+.+.+...-.+....++++.+..++... |.+. ......+||+|.++...|+
T Consensus 295 ~~~a~~w~~~~~~~-~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L---------~~~~---~~~~rw~YW~aRa~~~~g~ 361 (644)
T PRK11619 295 TDEQAKWRDDVIMR-SQSTSLLERRVRMALGTGDRRGLNTWLARL---------PMEA---KEKDEWRYWQADLLLEQGR 361 (644)
T ss_pred CHHHHHHHHhcccc-cCCcHHHHHHHHHHHHccCHHHHHHHHHhc---------CHhh---ccCHhhHHHHHHHHHHcCC
Confidence 55666666654432 233344444445556788887777766664 2111 1123578999999888999
Q ss_pred HHHHHHHHHHHh
Q 008435 465 WEEGIAHLERIG 476 (565)
Q Consensus 465 ~~eAi~~leraa 476 (565)
.++|..+|++++
T Consensus 362 ~~~A~~~~~~~a 373 (644)
T PRK11619 362 KAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHh
Confidence 999999999843
No 363
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.28 E-value=31 Score=35.83 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=56.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHH
Q 008435 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIA 470 (565)
Q Consensus 391 ~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~ 470 (565)
.|.++-...|+|+..|.....-....|-+.+-...|.+++. .+|.+. +.+. +.-..-+...++.+.+..
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~-----khP~nv-dlWI-----~~c~~e~~~~ani~s~Ra 163 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT-----KHPLNV-DLWI-----YCCAFELFEIANIESSRA 163 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCc-eeee-----eeccchhhhhccHHHHHH
Confidence 34555666777777777777666677777777777777744 346544 1110 001122466777888888
Q ss_pred HHHHHhhccCCCCchhhhhhhh
Q 008435 471 HLERIGNLKEPEEPKSKAHYYD 492 (565)
Q Consensus 471 ~leraa~~l~P~~~~~~~~~~~ 492 (565)
.|.+ ..+.||+.|..+..|..
T Consensus 164 ~f~~-glR~N~~~p~iw~eyfr 184 (435)
T COG5191 164 MFLK-GLRMNSRSPRIWIEYFR 184 (435)
T ss_pred HHHh-hhccCCCCchHHHHHHH
Confidence 8888 67788888876665543
No 364
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=60.71 E-value=1.5e+02 Score=32.49 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCC-CCchHHHHHHHHhhCCCCHHHHH
Q 008435 371 ELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALI 407 (565)
Q Consensus 371 ~l~~lA~~l~~~g~-~~eAi~~l~~AL~~dP~~a~A~~ 407 (565)
-++.-|..+-+.|. -++|+++++.+++..|.|.+.-.
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n 418 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN 418 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH
Confidence 34556677777777 77799999999999999985533
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.65 E-value=24 Score=34.40 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=51.2
Q ss_pred CchHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC
Q 008435 386 ERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP--~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g 463 (565)
++|.+.|-++ +-.| ++++..+.||-.|. ..+.++|+..+.+++++. ++++ ......+..|+.++..+|
T Consensus 123 ~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~----~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 123 QEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDD----NFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCC----CCCHHHHHHHHHHHHHhc
Confidence 4455544433 2222 57889999998877 557899999999998763 2221 112245667999999999
Q ss_pred CHHHHHH
Q 008435 464 KWEEGIA 470 (565)
Q Consensus 464 ~~~eAi~ 470 (565)
++++|--
T Consensus 193 ~~e~AYi 199 (203)
T PF11207_consen 193 NYEQAYI 199 (203)
T ss_pred chhhhhh
Confidence 9998853
No 366
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.26 E-value=18 Score=29.44 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
...+.-+-..|+++||+.+|+.|++.+
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 334444558899999999999999875
No 367
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.21 E-value=1.3e+02 Score=32.48 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=87.8
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC--hhhhh
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE--PEAID 446 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~--~~~~~ 446 (565)
+-.+|..+..-|+.+.|+++|-++-...-+ -...+.++=.+-...|+|..-..+-.+|.+- |+. -....
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st------~~~~~~~~q~ 226 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST------PDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC------chhhhhHHHh
Confidence 456777888899999999999986554433 2556667777777888888777777777431 100 00001
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch----hhhhhhhHHHHHHHHH----------HHHHHHHHhcC
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK----SKAHYYDGLVVLARYV----------ANITFLIFATS 512 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~----~~~~~~~~~~~La~~l----------~~~l~~Al~l~ 512 (565)
.........|.+...+++|..|..+|-. +.-..-+.+. .....+.++.+++.+- -+.|+..+++.
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~-~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~ 305 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLL-AEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELE 305 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHh-CCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcC
Confidence 1112456688888999999999999877 3311111111 0112233444554322 45677888888
Q ss_pred CCcHHHHHhh
Q 008435 513 PSIINLLTVS 522 (565)
Q Consensus 513 P~~~~~l~~~ 522 (565)
|...+++...
T Consensus 306 Pqlr~il~~f 315 (466)
T KOG0686|consen 306 PQLREILFKF 315 (466)
T ss_pred hHHHHHHHHH
Confidence 9887665443
No 368
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.90 E-value=2e+02 Score=34.89 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.++.+-++|.+.++.|...+|++-|-+| +|+..|...-.+..+.|+|++=+.++.-|-+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5778889999999999999999988654 67778888888899999999999999888554
No 369
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=58.04 E-value=8.9 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+.+..+|...+..+++++|+.-|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999985
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.91 E-value=66 Score=36.71 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC--------------------------CHHHHHHHHHHHHHcCCHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD--------------------------NINALILMGQTQLQKGLLEEA 422 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~--------------------------~a~A~~~LG~~~~~~g~~~eA 422 (565)
+-.++..|...+..+..++|.++++++++.=-+ ....++..+....-.+++.+|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 334455567777788888999999888762111 012356667777788999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473 (565)
Q Consensus 423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~le 473 (565)
....+.+.+.. ...|... ........++..|..+...|+.++|..+|.
T Consensus 381 ~~~l~~~~~~~--~~~~~~~-~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLC--QRSPSKL-YESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHH--hcCccch-hhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99998885532 1112110 112234568889999999999999999998
No 371
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.28 E-value=26 Score=30.34 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL 418 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~ 418 (565)
.......|...+..||+.+|++.+.++-+..++..-.+..-++....+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 55678999999999999999999999977766666666666777776664
No 372
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.28 E-value=89 Score=32.69 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
....|+.+|...++|..|...+.-. . +...+... +.+....-+..+|..|...++..+|..+..|+.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I-~---~~tg~~~~-d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGI-P---LDTGQKAY-DVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc-C---cccchhhh-hhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4467889999999999998877544 2 22222211 222222345668999999999999999999944
No 373
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.11 E-value=16 Score=29.86 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008435 413 QLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.-..|++++|+.+|.+||+..
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 347788888888888887654
No 374
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=55.67 E-value=1.6e+02 Score=26.59 Aligned_cols=106 Identities=13% Similarity=0.063 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHh---hcc
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI---VASQWSGVACIRQEKWEEGIAHLERIG---NLK 479 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~---~a~~~lG~a~~~~g~~~eAi~~leraa---~~l 479 (565)
+..+|....+.+++-.++-+|++|+++..-....++.+..+... ..-.+++..+..+|+-+=.+++++-+. ..+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999987641111122222222221 134568888999999999999987632 346
Q ss_pred CCCCchhhhhhhhHH-HHHHHHHHHHHHHHHhcCCCc
Q 008435 480 EPEEPKSKAHYYDGL-VVLARYVANITFLIFATSPSI 515 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~-~~La~~l~~~l~~Al~l~P~~ 515 (565)
-|+-|...- +++ ..+|-+ ...+-.-++.+|+-
T Consensus 84 iPQCp~~~C---~afi~sLGCC-k~ALl~F~KRHPNP 116 (140)
T PF10952_consen 84 IPQCPNTEC---EAFIDSLGCC-KKALLDFMKRHPNP 116 (140)
T ss_pred ccCCCCcch---HHHHHhhhcc-HHHHHHHHHhCCCH
Confidence 677664322 111 123322 34444555666654
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=54.97 E-value=17 Score=40.09 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=54.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 361 KISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
.+...+...+-++..|.+++..+ +.-.|+.-...|+++||-...||+.|+.++.+.+++.||+++...+
T Consensus 400 a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 400 AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 33344445677777888877654 4555777778999999999999999999999999999999987655
No 376
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.95 E-value=56 Score=39.97 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh-------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN-------KE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~-------~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
+..+..++..+...|++++|+..-++|.- .| |+...++.+++......++...|...+.++..+..+.-.|+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 44567788889999999999998887754 33 56788999999999999999999999999987754444443
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.|.- .....+++..+...++++.|+.+++.+
T Consensus 1053 hP~~----a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1053 HPPT----ALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred CCch----hhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3311 122345777788889999999999993
No 377
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.69 E-value=98 Score=35.65 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.|+.++|..+.....+++|.++|.+
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666666655
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.14 E-value=75 Score=32.48 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 416 KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 416 ~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
..++++|+..|++++++ .+. ..+.-..|.-..-.+++++|+|+|-.+.|+++
T Consensus 40 e~~p~~Al~sF~kVlel-----EgE---KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLEL-----EGE---KGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred ccCHHHHHHHHHHHHhc-----ccc---cchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34789999999999764 232 22333345555667889999999999998883
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.89 E-value=93 Score=32.21 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=63.2
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHH----HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 357 AKQLKISVENLTPKELIALSVKFL----SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~lA~~l~----~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
|..|.++.-|++.+++-++-..+- ...++.=|..-=+++-.+ +.......+..|...|.+.||+++-++++.+
T Consensus 232 s~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~l---y~kllgkva~~yle~g~~neAi~l~qr~ltl 308 (361)
T COG3947 232 SLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL---YMKLLGKVARAYLEAGKPNEAIQLHQRALTL 308 (361)
T ss_pred HHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH---HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Confidence 557777777777766655544331 111111111111111111 1223445666788999999999999999654
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+|-+. ..+..+-..+...|+--+|+++|++.+.
T Consensus 309 -----dpL~e-------~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 309 -----DPLSE-------QDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred -----Chhhh-------HHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34222 2344566788999999999999999554
No 380
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.78 E-value=78 Score=35.26 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=54.5
Q ss_pred CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Q 008435 399 EPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK-WEEGIAHLERIG 476 (565)
Q Consensus 399 dP~~a~-A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~-~~eAi~~leraa 476 (565)
|+++.- -+..+|.++...|+.+.|..+|..+++.. . .... +....+.|+|-+|..+..+|. ..||++++++ |
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~-~~~~---d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~k-A 517 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-S-KRTE---DLWAVPFALYELALLYWDLGGGLKEARALLLK-A 517 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-H-hhcc---ccccccHHHHHHHHHHHhcccChHHHHHHHHH-H
Confidence 444433 45678999999999999999999997542 1 1111 223334588999999999988 9999999999 6
Q ss_pred h
Q 008435 477 N 477 (565)
Q Consensus 477 ~ 477 (565)
.
T Consensus 518 r 518 (546)
T KOG3783|consen 518 R 518 (546)
T ss_pred H
Confidence 6
No 381
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=52.55 E-value=3.3e+02 Score=32.14 Aligned_cols=170 Identities=17% Similarity=0.160 Sum_probs=95.8
Q ss_pred ccchhhhHHhhhhh---------HHHHHHHHHhcC-HHHHhHhCCCCCCCCCCCCCCccccccccCCCCchhhhcCCCCC
Q 008435 297 YIPQGSLVYWVTNS---------SFSIVQQLALKH-PASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVEN 366 (565)
Q Consensus 297 ~~Pagl~lYW~~s~---------~~sl~Q~~~l~~-~~~rk~l~ip~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 366 (565)
--|.|+..||+.-. +...+=..++.. ..+-.+|| +.++.....+..++.-+ ++.
T Consensus 555 d~~~al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~~~f~~iLG---~i~~dG~r~~G~l~~f~------------~~~- 618 (835)
T KOG2168|consen 555 DTRVALQYYYLLRLNKDPQGSNLFLKCVCELVLETEEEFDLILG---KIKPDGSREPGLLDEFL------------PLI- 618 (835)
T ss_pred cchhhhheeeeecccCChhHHHHHHHHHHHHHHhccccHHHHhc---ccCCCCCCCcchHhhhc------------cch-
Confidence 35778888887422 444555566666 66888899 77777777666666321 111
Q ss_pred CCH-HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 367 LTP-KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 367 ~~~-~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
.+. .-.++-|......|++++|+.+|+.|=+.|---..+.-.|+.+....+ ...|.....-+..... +.-++.++
T Consensus 619 ~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~-y~~~~~~~ 697 (835)
T KOG2168|consen 619 EDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDI-YESNKGDS 697 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHH-HHhccCcc
Confidence 122 234556667778899999999998776665555556666666655442 2233333332222111 23334333
Q ss_pred hhhhHHH-HHHHHHH--HHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 443 EAIDLLI-VASQWSG--VACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 443 ~~~~~~~-~a~~~lG--~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+...... .....+. .=++..|++++|...++. .. +-|.++.
T Consensus 698 ~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~-l~-LiP~~~~ 741 (835)
T KOG2168|consen 698 AKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEH-LD-LIPLDPL 741 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-Hh-ccCCChh
Confidence 2211110 0111111 124789999999999998 44 4566553
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.53 E-value=1.3e+02 Score=34.27 Aligned_cols=104 Identities=17% Similarity=0.031 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKE---P------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d---P------~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
..++.++...+-.+++.+|...++.+.+.. | -.+..++..|..+...|+.+.|+.+|.+......-...+.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~ 441 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRK 441 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccC
Confidence 445677888888999999998888777653 2 2488999999999999999999999984431100000122
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHH----HHHHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEE----GIAHLER 474 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~e----Ai~~ler 474 (565)
.. ..+....+..++..++...+.-++ +.+.+++
T Consensus 442 ~~-~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~ 478 (608)
T PF10345_consen 442 SK-FRELYILAALNLAIILQYESSRDDSESELNELLEQ 478 (608)
T ss_pred Cc-chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHh
Confidence 12 334444566677777766665444 5555554
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.84 E-value=2.4e+02 Score=30.27 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN--ALILM--GQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~--A~~~L--G~~~~~~g~~~eA~~~~~rAl~ 431 (565)
....++..++..++|..|...++...+.-|.+.. .+..+ |+-+-..-++++|.+++++...
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4457888899999999999999999986444433 44444 4444577789999999998765
No 384
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.70 E-value=60 Score=35.22 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHH-----------HhhCCCCHHHHHHHHHHHHHcCCH---HHHH-------HHHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLA-----------LNKEPDNINALILMGQTQLQKGLL---EEAV-------EYLEC 428 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~A-----------L~~dP~~a~A~~~LG~~~~~~g~~---~eA~-------~~~~r 428 (565)
--+++.|.+++...+|++|+.++-.| |+.--+++-.....-++|+...+. ++|. ..|.+
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 45788899999999999998877554 444455565566666778777643 3444 33433
Q ss_pred HHHhh----hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 429 AISKL----FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 429 Al~l~----~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
+--.. +....+..|+ .....+-+..-|+..+++|+.++|.++++.+
T Consensus 244 syGenl~Rl~~lKg~~spE-raL~lRL~LLQGV~~yHqg~~deAye~le~a 293 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPE-RALILRLELLQGVVAYHQGQRDEAYEALESA 293 (568)
T ss_pred hhhhhhHhhhhccCCCChh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32111 0111122232 2222234556799999999999999999984
No 385
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=51.53 E-value=45 Score=31.19 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHHHHHHH
Q 008435 119 GFPWWTIIVSSTVALRIA 136 (565)
Q Consensus 119 GlpW~~aIil~ti~vRl~ 136 (565)
-+|..++|++++++.-++
T Consensus 12 ~~P~~i~v~~~~~~~~~~ 29 (168)
T PF01956_consen 12 LLPITIVVFLIAILRGLI 29 (168)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 357777777777776555
No 386
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=51.29 E-value=17 Score=41.14 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=34.5
Q ss_pred hhhHHhhhhhHHHHHHHHHhc------CHHHHhHhCCCCCCCCCCCCCCcccccccc
Q 008435 301 GSLVYWVTNSSFSIVQQLALK------HPASRTMLGLPDKVVPAAARKPEEIDTLET 351 (565)
Q Consensus 301 gl~lYW~~s~~~sl~Q~~~l~------~~~~rk~l~ip~~~~~~~~~~~~~~~~~~~ 351 (565)
|+=+| .---.|-.+|.++-. +.-+||........+.|.+|.+|.++.|+.
T Consensus 664 AlEmy-TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~ 719 (1081)
T KOG1538|consen 664 ALEMY-TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEH 719 (1081)
T ss_pred HHHHH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccch
Confidence 34444 455678889988753 334677777766777777778999998753
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.13 E-value=1.4e+02 Score=26.27 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=49.7
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~ 453 (565)
+.|..--..-..+||....+-.-..+-..--+.......++.+|+|++|+ ..... -. .++. -.
T Consensus 11 ElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-------~~---~pdL----~p 73 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLPQC-------HC---YPDL----EP 73 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHHTT-------S-----GGG----HH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hhccc-------CC---CccH----HH
Confidence 44444444556677766665544444433334455566788999999982 22210 00 1221 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 454 WSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 454 ~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
|++.|-.+.|-.+++..++.|.+.
T Consensus 74 ~~AL~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 74 WAALCAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHhhccHHHHHHHHHHHHh
Confidence 467788999999999999998555
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.32 E-value=23 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008435 413 QLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.-..|++++|+.+|.+|++..
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 347788999999999987654
No 389
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.03 E-value=19 Score=29.30 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+.++...|..+-..|++++|+.+|+.+++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567888999999999999999999999875
No 390
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=47.46 E-value=95 Score=38.08 Aligned_cols=111 Identities=12% Similarity=-0.049 Sum_probs=80.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCchHH------HHH-HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008435 362 ISVENLTPKELIALSVKFLSKGDKERPIP------LLQ-LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~------~l~-~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~ 434 (565)
..|..-++++..+.+.....+|.+.+|.+ ++. .--.+.|+.+..+-.++.++.+.|+.++|+..-++|.-..
T Consensus 925 s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~- 1003 (1236)
T KOG1839|consen 925 SSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS- 1003 (1236)
T ss_pred CCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeee-
Confidence 33444567788899988888888887777 555 4455778999999999999999999999999998885332
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 435 l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
....-.+.+.....+.+++...+..++...|...+.++.
T Consensus 1004 ---eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1004 ---ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred ---chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 110011122223456778888888888888988888844
No 391
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.31 E-value=23 Score=28.75 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=23.5
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
++|+.++++|++. -..|++++|..+|..+++..
T Consensus 4 ~~Ai~lv~~Av~~---------------D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 4 EKAIALVVQAVKK---------------DQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHHH
Confidence 4566666666544 36788999999999987653
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.19 E-value=41 Score=32.07 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=37.1
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+.++..++.++..| ++..+..++.++..+|+.+||.+..+++..
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777778 788899999999999999999999999954
No 393
>PF12854 PPR_1: PPR repeat
Probab=46.94 E-value=36 Score=22.79 Aligned_cols=24 Identities=4% Similarity=-0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.|.-+-..+++.|+.++|.+.|++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344567789999999999999987
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.86 E-value=1.4e+02 Score=35.33 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
++..-..|......|+.++|+++.+.+++.=|.+ .-++..+|.+..-+|++++|..+-+++.+.. +..+
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a------~~~~ 531 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA------RQHD 531 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH------HHcc
Confidence 4555677888899999999999999999988876 5578899999999999999999999986542 0000
Q ss_pred hhhHHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 008435 444 AIDLLIVASQWSGVACIRQEK--WEEGIAHLER 474 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~--~~eAi~~ler 474 (565)
.......+......++..+|+ +++....+..
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111111234445667788883 4444444444
No 395
>PF12854 PPR_1: PPR repeat
Probab=46.59 E-value=42 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLEC 428 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~r 428 (565)
|...|..+=..+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344566666667777777777777654
No 396
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=46.57 E-value=39 Score=22.59 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=20.8
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHH
Q 008435 403 INALILMG--QTQLQKG-----LLEEAVEYLECAIS 431 (565)
Q Consensus 403 a~A~~~LG--~~~~~~g-----~~~eA~~~~~rAl~ 431 (565)
++|.+.+| .++..-. +.++|.++|++|.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 46788899 5444332 47999999999954
No 397
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=45.83 E-value=18 Score=29.43 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=24.5
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.+|+.++++|++.| ..|++++|..+|..+++..
T Consensus 4 ~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 4 EQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHH
Confidence 35666777776655 4489999999999998764
No 398
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.68 E-value=77 Score=35.05 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISK 432 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~~eA~~~~~rAl~l 432 (565)
|-|..-+..-..-..+.+.+.+--..|.+++...|++++.|..-+.-.+..+. .+.|...+.++++.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 33444444333222334458888899999999999999999998888777665 88889999999654
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.59 E-value=26 Score=25.42 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCCCchHHHHHHHH
Q 008435 374 ALSVKFLSKGDKERPIPLLQLAL 396 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL 396 (565)
.+|.+|.+.|+.+.|...+++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.55 E-value=2.5e+02 Score=29.68 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
--.|+.+..++|+..||++.++...+. .| .-.....+.++-.++.+..-|.+....+-+.-....|..+.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke-----~p-----l~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~ 347 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKE-----FP-----LLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAA 347 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhh-----cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHH
Confidence 346888899999999999999877431 11 11112345666666767666776666665521222333332
Q ss_pred hhhhhhhHHHHHHHH------------------H---HHHHHHHHhcCCCcHHHHHhh
Q 008435 486 SKAHYYDGLVVLARY------------------V---ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 486 ~~~~~~~~~~~La~~------------------l---~~~l~~Al~l~P~~~~~l~~~ 522 (565)
. -|..++. .++. . ++.+.+|++.||....++-+.
T Consensus 348 i--cYTaALL-K~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 348 I--CYTAALL-KTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred H--HHHHHHH-HHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 1 1211111 1111 0 788999999999987765443
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.86 E-value=62 Score=32.74 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLEC 428 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~r 428 (565)
++++.|..+|..+.+.|++.+|..||-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4566777777777777777777777643
No 402
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.67 E-value=23 Score=28.89 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
+.+++..|..+-..|++++|+.+|.++|+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55677788888888888888887777665
No 403
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.66 E-value=41 Score=24.33 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.+.|+..|...|+.+.|.+.+++.++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999964
No 404
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.57 E-value=56 Score=25.58 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
...|.-.-..|++++|+++|.+|++.+
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 334444557899999999999998754
No 405
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=43.31 E-value=27 Score=27.98 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008435 413 QLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.-..|++++|+.+|..|++..
T Consensus 16 ~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 16 EDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 345689999999999998764
No 406
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=60 Score=33.75 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=7.7
Q ss_pred HHHHcCCHHHHHHHHHH
Q 008435 458 ACIRQEKWEEGIAHLER 474 (565)
Q Consensus 458 a~~~~g~~~eAi~~ler 474 (565)
+...+.+-++-.++++.
T Consensus 61 ~~EYLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 61 FTEYLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444443
No 407
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.53 E-value=3.3e+02 Score=35.96 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=72.7
Q ss_pred CCchHHHHHHHHh---hC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435 385 KERPIPLLQLALN---KE----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (565)
Q Consensus 385 ~~eAi~~l~~AL~---~d----P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~ 457 (565)
..+-+-.+++++. .+ ..-++.|...|++....|+++.|-.+.-.|.+.. .+.++.-.+.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------------~~~i~~E~AK 1710 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------------LPEIVLERAK 1710 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------------cchHHHHHHH
Confidence 4455555565533 23 3448899999999999999999988888884321 1234445677
Q ss_pred HHHHcCCHHHHHHHHHHHhhccCCCC-------chhhhhh--hhHHHHHHHHH-----------HHHHHHHHhcCCC
Q 008435 458 ACIRQEKWEEGIAHLERIGNLKEPEE-------PKSKAHY--YDGLVVLARYV-----------ANITFLIFATSPS 514 (565)
Q Consensus 458 a~~~~g~~~eAi~~leraa~~l~P~~-------~~~~~~~--~~~~~~La~~l-----------~~~l~~Al~l~P~ 514 (565)
.+-.+|+-..|+..+++.....-|+. |...... ..+.+.++... .++|..+.+.+|.
T Consensus 1711 ~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1711 LLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 78899999999999999443333331 1211111 11222222222 7888999999884
No 408
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=42.45 E-value=26 Score=27.51 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
+..+...|...-+.|++++|+.+|+++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567778888888888888887777665
No 409
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=41.40 E-value=59 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEA 422 (565)
Q Consensus 390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA 422 (565)
..|.+||..+|++..++...+.-+...|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 457889999999999999999999999998765
No 410
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=41.25 E-value=43 Score=21.84 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008435 404 NALILMGQTQLQK----GLLEEAVEYLECAIS 431 (565)
Q Consensus 404 ~A~~~LG~~~~~~----g~~~eA~~~~~rAl~ 431 (565)
.+.+.||..|..- .+.++|..+|++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 5678888887643 378999999999843
No 411
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.47 E-value=56 Score=34.61 Aligned_cols=46 Identities=28% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 384 ~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
..-+|+.+++.++..+|.|......+-.+|...|-.+.|.+.|++.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4457899999999999999999999999999999999999999765
No 412
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.33 E-value=1.2e+02 Score=34.07 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHH--CCCCCchHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLS--KGDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~--~g~~~eAi~~l~~AL~-----~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-|.++..+|...-- ..+-..++.+|++|+. .+-.+...|..+|..+++.+++.||+.++..|-..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777765543 3345668999999987 45667889999999999999999999999998654
No 413
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=39.24 E-value=1.4e+02 Score=27.57 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCC
Q 008435 437 GHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~P~~ 483 (565)
.+|.|.+..+.+..-...+|..+...| +.++|..+|-+ +....|+-
T Consensus 78 p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~n-Al~Vc~qP 124 (148)
T TIGR00985 78 PDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYN-ALKVYPQP 124 (148)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHHhCCCH
Confidence 345555544444444556999999999 99999999999 55566653
No 414
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.09 E-value=25 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+..++.+|...-..|++++|+.+|.+|++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 566788888888899999999999999985
No 415
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=38.72 E-value=59 Score=35.18 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=52.5
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
-.+...|+..++.+-|+.+..+.|.++|.+..-|..-+-+.....+|.||...+--|.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778999999999999999999999999999999999999999999988776664
No 416
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=38.65 E-value=71 Score=31.83 Aligned_cols=49 Identities=20% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 422 A~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
|+.+|.+|+.+. |.+. .+|..+|.++...|+.=+|+-+|-|+.....|-
T Consensus 1 A~~~Y~~A~~l~-----P~~G-------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf 49 (278)
T PF10373_consen 1 AERYYRKAIRLL-----PSNG-------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF 49 (278)
T ss_dssp HHHHHHHHHHH------TTBS-------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--
T ss_pred CHHHHHHHHHhC-----CCCC-------CcccchhhhhccccchHHHHHHHHHHHhcCCCc
Confidence 789999997764 5433 457789999999999999999999965554444
No 417
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.55 E-value=57 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=17.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008435 413 QLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+...|+.++|+.+|+++++.+
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred hhhcCCHHHHHHHHHHHHHHH
Confidence 345689999999999998764
No 418
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.25 E-value=1.8e+02 Score=33.82 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=65.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHH----HHHHHHcC-CHHHHHHHHHHHHHhhh
Q 008435 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM----GQTQLQKG-LLEEAVEYLECAISKLF 434 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~L----G~~~~~~g-~~~eA~~~~~rAl~l~~ 434 (565)
.++......++..+.+|..+...|++++|-++|-.|++++..|..-.... -.-..+.| ++++|.+.|-+--.-..
T Consensus 986 ari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ 1065 (1636)
T KOG3616|consen 986 ARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAA 1065 (1636)
T ss_pred HHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHH
Confidence 45555666778888999999999999999999999999998775432211 11133555 67888777633200000
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 435 l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
...-. ..-..+....++..-+.-....|++.+|...+-|
T Consensus 1066 aerva-e~h~~~~l~dv~tgqar~aiee~d~~kae~fllr 1104 (1636)
T KOG3616|consen 1066 AERVA-EAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLR 1104 (1636)
T ss_pred HHHHH-HhhChhhhHHHHhhhhhccccccchhhhhhheee
Confidence 00000 0001122223333322333567777777777766
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=1.4e+02 Score=33.29 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhh---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNK---EPD----NINALILMGQTQLQKGL-LEEAVEYLECA 429 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~---dP~----~a~A~~~LG~~~~~~g~-~~eA~~~~~rA 429 (565)
++.+|..+-..|+.+.|..+|+..++. .-+ .+.|+|.+|.++...|. .+||.+++.+|
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKA 517 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 356788999999999999999998843 222 37899999999999998 99999999999
No 420
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=38.08 E-value=1.2e+02 Score=27.85 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH-HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 370 KELIALSVKFL-SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 370 ~~l~~lA~~l~-~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.+++.+|...+ .+|+.|+=.+.++....-+-.+++.+..+|.+|.+.|+..+|-+...+|-+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 35677776654 566666666667766666677899999999999999999999999999954
No 421
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=37.41 E-value=1.3e+02 Score=32.92 Aligned_cols=97 Identities=19% Similarity=0.064 Sum_probs=65.3
Q ss_pred CchhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008435 355 SPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (565)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~ 434 (565)
.-.-+..+..+..+++-+-++|...+.+|+.+-|+.+|+++=+ +..|..+|.-.|+-+.=.+..+.|...
T Consensus 333 ~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~-- 402 (443)
T PF04053_consen 333 NLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER-- 402 (443)
T ss_dssp -HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc--
Confidence 3344555665566788899999999999999999999998754 357888889999875544544445221
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 435 l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+. .. .-.++...|+.++.++.+.+ ..
T Consensus 403 ----------~~~-n~----af~~~~~lgd~~~cv~lL~~-~~ 429 (443)
T PF04053_consen 403 ----------GDI-NI----AFQAALLLGDVEECVDLLIE-TG 429 (443)
T ss_dssp ----------T-H-HH----HHHHHHHHT-HHHHHHHHHH-TT
T ss_pred ----------cCH-HH----HHHHHHHcCCHHHHHHHHHH-cC
Confidence 011 11 22466788999999999888 44
No 422
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=36.79 E-value=2e+02 Score=25.42 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=39.0
Q ss_pred HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427 (565)
Q Consensus 379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~ 427 (565)
+...+.....+.+++..+..++.+...+..+..+|...+ .++.+++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 345678889999999999999999999999999998764 455566655
No 423
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.26 E-value=38 Score=27.24 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
+..++..|...-..|++++|+.+|.+|++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777777788888888887777765
No 424
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=35.96 E-value=3.3e+02 Score=27.25 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
+.+.++.++|+...+.=++ .+|.+..... .+-..++-.|+|++|..-++- +.++.|++.....
T Consensus 11 LL~~~sL~dai~~a~~qVk-----akPtda~~Rh-------flfqLlcvaGdw~kAl~Ql~l-~a~l~p~~t~~a~ 73 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVK-----AKPTDAGGRH-------FLFQLLCVAGDWEKALAQLNL-AATLSPQDTVGAS 73 (273)
T ss_pred HHHhccHHHHHHHHHHHHh-----cCCccccchh-------HHHHHHhhcchHHHHHHHHHH-HhhcCcccchHHH
Confidence 5577888999998877754 3576652221 134568899999999999988 6678888875433
No 425
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.10 E-value=44 Score=26.75 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008435 413 QLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+...|++++|+.+|.+|++..
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 18 ADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 345789999999999998875
No 426
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=33.97 E-value=6.9e+02 Score=27.72 Aligned_cols=176 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL------------ 433 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~------------ 433 (565)
...++.++.-..=+...+|.++|+...+++++..|. .+..++..|....+-++--.+|++.+.-+
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~ 375 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESA 375 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhh
Q ss_pred -hhcCCCCChhhhhHHHHHHHHHHHHHH----------------------------------------HcCCHHHHHHHH
Q 008435 434 -FLAGHPTEPEAIDLLIVASQWSGVACI----------------------------------------RQEKWEEGIAHL 472 (565)
Q Consensus 434 -~l~~~P~~~~~~~~~~~a~~~lG~a~~----------------------------------------~~g~~~eAi~~l 472 (565)
..+++|.............+-+..|+. .+|++.-|-..|
T Consensus 376 s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~if 455 (660)
T COG5107 376 SKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIF 455 (660)
T ss_pred ccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHH
Q ss_pred HHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc--HHHHHhhhhhhHHHhhhhh--hhhhhhhhhhc
Q 008435 473 ERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI--INLLTVSNIIDIIYVNCYE--LKKKRFASCFF 545 (565)
Q Consensus 473 eraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~--~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 545 (565)
+- .....|+++.....|.+-++.++.-- ...++.+++.=.+. .++++..-+.+.-++..-+ ...+||.+.|+
T Consensus 456 el-Gl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 456 EL-GLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HH-HHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
No 427
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=33.60 E-value=52 Score=34.75 Aligned_cols=57 Identities=23% Similarity=0.054 Sum_probs=50.7
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.+...+..+++..|+..-..+++.++....+|+..|+.+....++++|++.++.+..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 455556778899999988889999999999999999999999999999999999943
No 428
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=33.15 E-value=1.3e+02 Score=27.11 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l 435 (565)
.+..+|....+.++.-+++-+|++|+.+--+- +-..++|+..+...|+.+-.++|++-|-++- +
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V-l 81 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV-L 81 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH-H
Confidence 35567888889999999999999998743221 3356889999999999999999998886653 4
Q ss_pred cCCCC
Q 008435 436 AGHPT 440 (565)
Q Consensus 436 ~~~P~ 440 (565)
.+-|.
T Consensus 82 tLiPQ 86 (140)
T PF10952_consen 82 TLIPQ 86 (140)
T ss_pred HhccC
Confidence 44443
No 429
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.91 E-value=99 Score=35.04 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
.+.+..++.+++..|..+..-++.++|-++|++.+..+|+ ++++..++-+.+.|-..+|.+.+++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 35 LPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKKV 100 (578)
T ss_pred CCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 4445567888899999999999999999999999999999 67888899999999888887777643
No 430
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.39 E-value=68 Score=36.54 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
+...+.-+.....+.-|-+.|++.=+. -.+-+++...++|+||-...++-
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhC
Confidence 333343444455556666666554322 12334455667777776655554
No 431
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.06 E-value=3.5e+02 Score=29.38 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK-----EP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
.+.-++-....+...|+..+-...+...+.. |- .-+.....+=..|...+.|+.|...-.+.. -|+.
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-------~pe~ 240 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-------YPEA 240 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-------Cccc
Confidence 3555677777777788877666655554442 11 123344555566777788898888777762 2443
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+... ...+-.|++|.+..-+++|..|.+++-+ +.++.|++.
T Consensus 241 ~snn-e~ARY~yY~GrIkaiqldYssA~~~~~q-a~rkapq~~ 281 (493)
T KOG2581|consen 241 ASNN-EWARYLYYLGRIKAIQLDYSSALEYFLQ-ALRKAPQHA 281 (493)
T ss_pred cccH-HHHHHHHHHhhHHHhhcchhHHHHHHHH-HHHhCcchh
Confidence 3222 2223356799999999999999999999 778888854
No 432
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.88 E-value=46 Score=26.94 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+..++.+|...-..|++++|+.+|.++++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567888999999999999999999988874
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=31.56 E-value=3.4e+02 Score=28.76 Aligned_cols=58 Identities=24% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+.++.++|+++.++.++..-..-.| +.........|.++...|+..++.+.++..-.
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~------~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEP------DAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35568899999999987653111111 11222344577888899999999999988333
No 434
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.81 E-value=46 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
++...|..+-+.|+.++|+.+|+++++
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 334444444444555555555444443
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.68 E-value=1.2e+02 Score=30.36 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAV 423 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~ 423 (565)
.....+++|..+...|++++|+++|+++....... ......+-.++...|+.++.+
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34556789999999999999999999985543321 233334444444444444433
No 436
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.32 E-value=98 Score=34.11 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~ 423 (565)
++...++|.....+|+|.=+.+++++++-.||+|..|....+.++.+.|--.|+.
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 4566789999999999999999999999999999999999999999999665553
No 437
>PF13041 PPR_2: PPR repeat family
Probab=30.11 E-value=93 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
|...|..+=..+.+.|++++|.+.|++-.+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4556777778899999999999999999653
No 438
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.74 E-value=3.9e+02 Score=24.78 Aligned_cols=100 Identities=26% Similarity=0.221 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHh-------hCCCCH--------------------------------HHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALN-------KEPDNI--------------------------------NALILMGQ 411 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~-------~dP~~a--------------------------------~A~~~LG~ 411 (565)
.....|...+..|+.++|...+++|.. .+|... .....-++
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 456788888999999999998888743 333333 45667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL-IVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 412 ~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~-~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
-+...|+.++|.+.++-+-.-. +-... ..+.. .......+..+...|+++||...+..+
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei----~~~~~-~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEI----DITTA-LLPLAQTPAAVKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EE----EEEEE-EEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccc----eeeee-eCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7888999999988887761100 00000 00110 112334677889999999999999883
No 439
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=29.46 E-value=1.2e+02 Score=19.60 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 008435 388 PIPLLQLALNKEPDNINALILMGQTQLQ 415 (565)
Q Consensus 388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~ 415 (565)
.+.+..+++..||+|-.+|...-.+...
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4677889999999999999887766544
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.42 E-value=5.2e+02 Score=31.87 Aligned_cols=30 Identities=10% Similarity=-0.086 Sum_probs=20.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 457 ~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
..+.+.+..|++++.-.+++..+.+++|..
T Consensus 991 rlle~hn~~E~vcQlA~~AIe~l~dd~ps~ 1020 (1480)
T KOG4521|consen 991 RLLEEHNHAEEVCQLAVKAIENLPDDNPSV 1020 (1480)
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcchhH
Confidence 345666777777777777666666676653
No 441
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.20 E-value=1.3e+02 Score=27.43 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=33.2
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+|.+++..+.+..-...+|..+..+|+.+++..++-. +....|+-.
T Consensus 70 d~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~n-Ai~vcgqpa 115 (143)
T KOG4056|consen 70 DPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLAN-AIVVCGQPA 115 (143)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHH-HHhhcCCHH
Confidence 3445555555444455699999999999999999999 665666643
No 442
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=29.04 E-value=60 Score=25.88 Aligned_cols=28 Identities=39% Similarity=0.452 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
..+...|...-..|++++|+.+|..|++
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666667777777777666654
No 443
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.87 E-value=90 Score=19.65 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008435 455 SGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 455 lG~a~~~~g~~~eAi~~lera 475 (565)
+-.+|.+.|++++|.+.|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 456789999999999999984
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.64 E-value=1.2e+02 Score=35.74 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
=++++.|..||.....+|+.+-|+-+|++.
T Consensus 669 ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 669 LDDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred cCcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 467889999999999999999999999988
No 445
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=28.63 E-value=6.9e+02 Score=28.27 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=53.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008435 393 QLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHL 472 (565)
Q Consensus 393 ~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~l 472 (565)
++-++.+|.|..+|+.|=+-+..+ .+++..+.|++-+.. .|..+ .+|-.........++|+.-...|
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-----FP~s~-------r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-----FPSSP-------RAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-----CCCCc-------HHHHHHHHHHHHhhhHHHHHHHH
Confidence 778999999999999998877666 899999999999542 34433 23333444557788888888888
Q ss_pred HHH
Q 008435 473 ERI 475 (565)
Q Consensus 473 era 475 (565)
.|.
T Consensus 77 ~RC 79 (656)
T KOG1914|consen 77 SRC 79 (656)
T ss_pred HHH
Confidence 883
No 446
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.40 E-value=1.3e+02 Score=34.83 Aligned_cols=101 Identities=13% Similarity=-0.015 Sum_probs=64.1
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------hhcCCCC------Ch
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL--------FLAGHPT------EP 442 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~--------~l~~~P~------~~ 442 (565)
...+..++.+.+...+...-...-+..+.+|++|..+...|+.++|..+|+++.... ...+.|. .+
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCC
Confidence 344577888777777776544445688999999999999999999999999984321 0112210 00
Q ss_pred hhh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 443 EAI-DLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 443 ~~~-~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
... .............+...|+..+|...+..+..
T Consensus 400 ~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~ 435 (644)
T PRK11619 400 KPDSALTQGPEMARVRELMYWNMDNTARSEWANLVA 435 (644)
T ss_pred chhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 000 00001223345566788888888888877444
No 447
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=28.25 E-value=1.2e+02 Score=24.04 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 008435 420 EEAVEYLECAI 430 (565)
Q Consensus 420 ~eA~~~~~rAl 430 (565)
++|.+...+|+
T Consensus 6 ~~A~~li~~Av 16 (77)
T smart00745 6 SKAKELISKAL 16 (77)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 448
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.14 E-value=7.6e+02 Score=26.34 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh---h---------------hhcCCC--CChh-
Q 008435 388 PIPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAISK---L---------------FLAGHP--TEPE- 443 (565)
Q Consensus 388 Ai~~l~~AL~~dP~~a~A~---~~LG~~~~~~g~~~eA~~~~~rAl~l---~---------------~l~~~P--~~~~- 443 (565)
+-..|+++++.-|++..+. ..-|.++...|+|.+....+..|=.. . .+..+. .+.+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 4466777777777665543 34688888888887766655444111 0 000000 0010
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
........++.+|.-|.+.++++.|+-.|.|+.
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan 152 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRAN 152 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHH
Confidence 011112356778999999999999999999943
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.14 E-value=2.1e+02 Score=28.59 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHCCCCCchHHHHHHHHhhC
Q 008435 379 FLSKGDKERPIPLLQLALNKE 399 (565)
Q Consensus 379 l~~~g~~~eAi~~l~~AL~~d 399 (565)
++..|+++.|++..+-||+.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcC
Confidence 456789999999999999976
No 450
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=27.88 E-value=77 Score=19.64 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
|..+=..|.+.|++++|.+.|++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5566677889999999999998874
No 451
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.38 E-value=5.5e+02 Score=34.08 Aligned_cols=64 Identities=16% Similarity=-0.008 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
..+-+++.|......|+++.|...+-.|.+.. -++++...|..+-+.|+...|+..+++.+++.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46778889988888999999999999998888 67788999999999999999999999998764
No 452
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=26.30 E-value=9.8e+02 Score=27.01 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-.++++++..+.+. ..++=-...++.++.|=+++..--.|+..|.+ ++-..+..+|.+|+..
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 45788999888888 77788899999999999999998999988877 8889999999999754
No 453
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.20 E-value=1.5e+02 Score=30.96 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-H-----HHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-L-----EEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~-----~eA~~~~~rAl~l 432 (565)
+.++...|...-..++|++|..+|+.|++ |+.++.=|..+++ - ++-.+|++||-++
T Consensus 10 aI~lv~kA~~eD~a~nY~eA~~lY~~ale--------YF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkL 71 (439)
T KOG0739|consen 10 AIDLVKKAIDEDNAKNYEEALRLYQNALE--------YFLHALKYEANNKKAKDSIRAKFTEYLDRAEKL 71 (439)
T ss_pred HHHHHHHHhhhcchhchHHHHHHHHHHHH--------HHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778999999999999987 3666666776665 3 3445777888555
No 454
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=25.43 E-value=62 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+..++..|...-..|++++|..+|+.+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456778888888899999999999988874
No 455
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=25.32 E-value=2.8e+02 Score=33.47 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~------~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-|+.+..|..++++-.-..--+.|.+||. -.|.-+--|...+.+|.+.|+++|=+++|+-|++.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 46677778777664322222244444443 45777888899999999999999999999999775
No 456
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=25.21 E-value=2.5e+02 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.057 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
.+..++.++..+|+.+||..+.++ +..+-|.
T Consensus 146 ~~~~~a~~l~~~G~~~eA~~~~~~-~~~lyP~ 176 (193)
T PF11846_consen 146 VYQRYALALALLGDPEEARQWLAR-ARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCc
Confidence 566789999999999999999999 6666663
No 457
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=25.19 E-value=8.9e+02 Score=27.52 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=59.2
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH-HHHHHHHHHHcCC
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA-SQWSGVACIRQEK 464 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a-~~~lG~a~~~~g~ 464 (565)
+.+...|...|...|..-.-|-..+..-.+.|..+++.+.|+|++.-. | ..... ...+..+....|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p-------~SvdlW~~Y~~f~~n~~~d 129 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----P-------LSVDLWLSYLAFLKNNNGD 129 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----h-------hHHHHHHHHHHHHhccCCC
Confidence 456667778899999999999999999999999999999999997532 2 11111 1224445567788
Q ss_pred HHHHHHHHHHHhh
Q 008435 465 WEEGIAHLERIGN 477 (565)
Q Consensus 465 ~~eAi~~leraa~ 477 (565)
.+.-...|+++..
T Consensus 130 ~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 130 PETLRDLFERAKS 142 (577)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888433
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.37 E-value=69 Score=28.59 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=16.7
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCC
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPD 401 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~ 401 (565)
+++|..++..|++++|..+|-+|+...|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 45566666666666666666666655544
No 459
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.37 E-value=1.1e+02 Score=32.39 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE--------PDNINALILMGQTQLQKGLLEEAVEYL 426 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--------P~~a~A~~~LG~~~~~~g~~~eA~~~~ 426 (565)
..+.++..|..++..+++++|...|..|..+. -++.++++..|..+++.++.+.++-.+
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999999999999998754 346788889998888876665544433
No 460
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=23.13 E-value=91 Score=32.85 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~--dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.+.|+......-.+.++...+...+. =.++-..|...|.++.+.|+.+||-+.|++|+.+
T Consensus 333 LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 333 LNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred ehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 35555555555555666666665554 3456667888999999999999999999999875
No 461
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.62 E-value=3e+02 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
..-|.+....|++++|++...++-+
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4457777899999999999999943
No 462
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=22.42 E-value=7e+02 Score=28.32 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 401 DNINALILMGQTQLQK--GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~--g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.++-|+..||.+-... ..-..+++.|++||.....- ..+.....|..+|-.|++.++|.||+..+-+++.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~-------Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTY-------YNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHH-------CTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHH-------hcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664432 23467899999998653000 0112223567799999999999999999988554
No 463
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=2e+02 Score=30.90 Aligned_cols=147 Identities=17% Similarity=0.078 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccCccccccCCCCCCcchhhHHHHHHHHHHHHHHHHhcccCcCCc
Q 008435 189 SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268 (565)
Q Consensus 189 ~~~~~~lp~liQiPifi~~~~~lr~m~~~~~~~l~~~g~lWf~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~ 268 (565)
++.|.....-.|-+.|...=-+.|.+.....++++.++..|+.+++...-...-.--..++...+.++............
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 33444444456777777777778888777777777777778877664321000000001111111111111111111111
Q ss_pred ccchhhHHHHHHHHHH-HHHHHHHHHhhcccchhhhHHhhhh-hHHHHHHHHHhcCHHHHhHhCCCCCCC
Q 008435 269 ENGLLGLLAKYYKSYL-NLMTLPLFFLGYYIPQGSLVYWVTN-SSFSIVQQLALKHPASRTMLGLPDKVV 336 (565)
Q Consensus 269 ~~~~~~~~~k~~k~~l-~~~~lp~~~~~~~~Pagl~lYW~~s-~~~sl~Q~~~l~~~~~rk~l~ip~~~~ 336 (565)
....+.-+.+. .... ..-..+++..+..++..++.||+.+ -.-..++.....+|.++..++.-..+.
T Consensus 84 ~~~lq~~l~~~-h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~ 152 (372)
T KOG1239|consen 84 VATLQNELERL-HVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDN 152 (372)
T ss_pred hhHHHHHHHHH-HHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccc
Confidence 11111111111 1111 0112445555678899999999999 455566677778888888887755543
No 464
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.19 E-value=1.6e+02 Score=18.54 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 008435 453 QWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 453 ~~lG~a~~~~g~~~eAi~~lera 475 (565)
..+-.++.+.|++++|.+.|++.
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567889999999999999983
No 465
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=7.4e+02 Score=26.93 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 384 ~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~--~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~ 461 (565)
-.++-+.+...+++.+|++..+|+..-.++.+++. +..=+...++++ .+||++-. ..... .+-.+.+...
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L-----~~D~RNfh-~W~YR--RfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKAL-----KQDPRNFH-AWHYR--RFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----hcCccccc-chHHH--HHHHHHHhcc
Confidence 55667888999999999999999999999998884 566777788884 45666441 11111 1223333333
Q ss_pred cCCHHHHHHHHHHHhhccCCCCchh
Q 008435 462 QEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 462 ~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.....+=+++..+++. .|+.|=.+
T Consensus 162 ~~~~~~El~ftt~~I~-~nfSNYsa 185 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLIN-DNFSNYSA 185 (421)
T ss_pred cccchhHHHHHHHHHh-ccchhhhH
Confidence 3345556677777444 35554433
No 466
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=1.2e+03 Score=26.54 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhh---------------------CCCCHHH---HHHHHHHHHHcCCHHH
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNK---------------------EPDNINA---LILMGQTQLQKGLLEE 421 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~---------------------dP~~a~A---~~~LG~~~~~~g~~~e 421 (565)
|...+.+++.|.....+|+.+-|-.+.+++|-. +|.|-.. .+.-=+-+.+.|=+.-
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 555778899999999999999888888877641 1333322 2233334557788899
Q ss_pred HHHHHHHHHHhhhhcCCCC-ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHH
Q 008435 422 AVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARY 500 (565)
Q Consensus 422 A~~~~~rAl~l~~l~~~P~-~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~ 500 (565)
|.++..-. +.++|. ||-..-.....+...+.=|...-++.++-+...+ +. +-|+.+ |. ++++.+
T Consensus 361 A~E~cKll-----lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~-l~-~~PN~~-----yS---~AlA~f 425 (665)
T KOG2422|consen 361 ALEWCKLL-----LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK-LS-QLPNFG-----YS---LALARF 425 (665)
T ss_pred HHHHHHHH-----hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-Hh-hcCCch-----HH---HHHHHH
Confidence 99977665 455675 4422222222222222222222223333333333 21 223332 21 134444
Q ss_pred H------------HHHHHHHHhcCCCc-HHHHHhhhhhhHH
Q 008435 501 V------------ANITFLIFATSPSI-INLLTVSNIIDII 528 (565)
Q Consensus 501 l------------~~~l~~Al~l~P~~-~~~l~~~~~~~~~ 528 (565)
+ ...+.+|+...|.. -++++.+..-+++
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~~da 466 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHPLVLSELLDELLLGDDA 466 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCCchh
Confidence 3 56788999999964 3555555544333
No 467
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=2e+02 Score=26.28 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~ 404 (565)
..++|..++.+|+.+++..++-.||...|+-++
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 357888888888888888888888777665544
No 468
>PHA01081 putative minor coat protein
Probab=21.20 E-value=1.7e+02 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHHHHHHHHH--HHHH
Q 008435 117 FTGFPWWTIIVSSTVALRIAL--LPLI 141 (565)
Q Consensus 117 ~tGlpW~~aIil~ti~vRl~l--lPl~ 141 (565)
..|++=..+||++++++|+.+ .|+.
T Consensus 74 ~iGlgq~lgII~aAI~iRl~LQLIPFv 100 (104)
T PHA01081 74 AIGIPQCLGMIMSAIIVRILLQLVPFT 100 (104)
T ss_pred HcCchhhHHHHHHHHHHHHHHhhccee
Confidence 478889999999999999984 6753
No 469
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.12 E-value=3.7e+02 Score=30.59 Aligned_cols=83 Identities=12% Similarity=0.017 Sum_probs=65.8
Q ss_pred HHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (565)
Q Consensus 378 ~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~ 457 (565)
.+.++...+.+....+.-+.-....+.+.+..+..+-..|+.++|-++|++.++.. |+ ++++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~ 82 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQN-----ND---------EARYEYAR 82 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhC-----Cc---------chHHHHHH
Confidence 34566778888888888888888888999999999999999999999999997652 32 23455666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 008435 458 ACIRQEKWEEGIAHLER 474 (565)
Q Consensus 458 a~~~~g~~~eAi~~ler 474 (565)
-+.+.|-...|...+++
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 83 RLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 77788888888888876
No 470
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=9.2e+02 Score=25.57 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 385 KERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.++-++-++++++..-+| .+|+...|.-|.+.|+.+.|++++++-.+.
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455566666544444 789999999999999999999999887654
No 471
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.03 E-value=2.9e+02 Score=24.55 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=37.4
Q ss_pred chHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 387 RPIPLLQLALN--KEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 387 eAi~~l~~AL~--~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
++...|+.... +--+.+..|..-|..+...|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 78888887766 556789999999999999999999999999874
No 472
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=6.8e+02 Score=29.78 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
.+...|.-++..|++++|...|-+....++|.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 44456666777777777777777644444443
No 473
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=1.3e+02 Score=31.90 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL 418 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~ 418 (565)
.+.-...+++.++..+....++++|++.++.+...+|++......+..+-....+
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 3444567899999999999999999999999999999999887777666544443
No 474
>PRK10316 hypothetical protein; Provisional
Probab=20.15 E-value=7.9e+02 Score=24.10 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=65.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHh---hC-----------CCCH----------------------
Q 008435 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALN---KE-----------PDNI---------------------- 403 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~---~d-----------P~~a---------------------- 403 (565)
++++.+-..+-.-+++++..+..|+.+.|..++.+|-. .+ |+.+
T Consensus 45 ~~lS~dG~~A~~DI~~AR~Alf~G~~~~Ak~ll~~A~~~l~~a~~D~~~f~ka~~~~p~~~d~wlPVd~e~~l~ed~~~t 124 (209)
T PRK10316 45 ERISEQGLYAMRDVQVARLALFHGDPEKAKELTNQASALLSDDSTDWAKFAKPDKKAPVNGDQYIVINASVGISEDYVAT 124 (209)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccHHHHHhccccCCCCCCceEEeCCeEEecccccCC
Confidence 34443333455567888888999999998888766533 22 2211
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 404 ---NALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 404 ---~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
.+-..-++-.++.|+.++|++.++-+ ... ....-|-+.. ..-...+..+...|+|.||-..+++
T Consensus 125 p~K~~Ava~AN~~Lk~Gd~~~A~e~LklA-gvdv~~~~al~PL~qT------~~~V~~A~~ll~~gkyyeA~~aLk~ 194 (209)
T PRK10316 125 PEKEAAIKIANEKMAKGDKKGAMEELRLA-GVGVMENQYLMPLKQT------RNAVADAQKLLDKGKYYEANLALKG 194 (209)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHc-CcchhhHhHhcCchhh------HHHHHHHHHHHhCCChhHHHHHHHh
Confidence 23455677788889999988887665 110 0000111000 0122355677899999999999988
Done!