Query 008435
Match_columns 565
No_of_seqs 377 out of 2563
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 03:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.7 8.6E-16 2.9E-20 148.4 14.1 173 366-559 2-203 (217)
2 4gco_A Protein STI-1; structur 99.6 2.1E-15 7.3E-20 133.6 12.6 112 363-487 7-118 (126)
3 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-14 3.7E-19 135.3 15.8 171 368-551 4-183 (184)
4 4gyw_A UDP-N-acetylglucosamine 99.6 5.9E-15 2E-19 168.1 16.3 136 366-521 6-150 (723)
5 2h6f_A Protein farnesyltransfe 99.6 3.5E-15 1.2E-19 157.7 12.5 181 361-555 89-288 (382)
6 4i17_A Hypothetical protein; T 99.6 3.5E-14 1.2E-18 136.6 17.4 143 366-521 4-158 (228)
7 2pl2_A Hypothetical conserved 99.6 3E-14 1E-18 137.5 15.5 150 359-522 29-191 (217)
8 2h6f_A Protein farnesyltransfe 99.6 2.5E-14 8.6E-19 151.2 15.6 184 359-555 121-323 (382)
9 3gyz_A Chaperone protein IPGC; 99.6 1.3E-14 4.3E-19 133.4 11.4 112 360-484 27-138 (151)
10 3urz_A Uncharacterized protein 99.5 2.2E-13 7.5E-18 130.5 16.2 108 368-488 3-126 (208)
11 4abn_A Tetratricopeptide repea 99.5 2E-13 6.8E-18 147.9 17.6 180 366-559 99-310 (474)
12 2vgx_A Chaperone SYCD; alterna 99.5 1.4E-13 4.9E-18 125.1 13.4 116 358-486 10-125 (148)
13 4ga2_A E3 SUMO-protein ligase 99.5 1.8E-14 6.1E-19 131.2 7.1 126 375-520 3-138 (150)
14 4i17_A Hypothetical protein; T 99.5 3.3E-13 1.1E-17 129.7 16.4 114 367-486 40-155 (228)
15 1w3b_A UDP-N-acetylglucosamine 99.5 1.6E-13 5.5E-18 142.4 14.8 171 365-555 199-387 (388)
16 2xcb_A PCRH, regulatory protei 99.5 1.8E-13 6.1E-18 122.7 12.8 113 361-486 10-122 (142)
17 3qky_A Outer membrane assembly 99.5 1.4E-12 4.9E-17 128.3 19.3 188 364-561 10-252 (261)
18 3u4t_A TPR repeat-containing p 99.5 1.4E-13 4.9E-18 134.8 10.4 171 368-556 2-191 (272)
19 4gyw_A UDP-N-acetylglucosamine 99.5 2.8E-13 9.5E-18 154.3 14.2 137 359-515 33-178 (723)
20 4gcn_A Protein STI-1; structur 99.5 4.1E-13 1.4E-17 118.7 12.3 108 369-482 8-115 (127)
21 4ga2_A E3 SUMO-protein ligase 99.4 1.9E-13 6.6E-18 124.3 9.9 115 359-486 21-136 (150)
22 4eqf_A PEX5-related protein; a 99.4 5.5E-13 1.9E-17 137.0 14.2 101 369-482 65-165 (365)
23 1w3b_A UDP-N-acetylglucosamine 99.4 1.2E-12 4E-17 135.9 16.2 62 369-430 101-162 (388)
24 3upv_A Heat shock protein STI1 99.4 6.1E-13 2.1E-17 115.9 11.2 100 368-480 3-102 (126)
25 1hxi_A PEX5, peroxisome target 99.4 7.1E-13 2.4E-17 116.2 11.0 101 371-484 19-119 (121)
26 2y4t_A DNAJ homolog subfamily 99.4 2.6E-12 8.7E-17 135.3 17.4 188 359-559 16-229 (450)
27 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-12 5.4E-17 120.5 13.9 137 361-517 31-176 (184)
28 2q7f_A YRRB protein; TPR, prot 99.4 6.6E-13 2.3E-17 127.3 11.7 104 368-484 22-125 (243)
29 1fch_A Peroxisomal targeting s 99.4 2.7E-12 9.1E-17 131.2 16.8 183 364-559 93-348 (368)
30 3uq3_A Heat shock protein STI1 99.4 1.5E-12 5.2E-17 125.5 13.6 181 368-559 4-225 (258)
31 1fch_A Peroxisomal targeting s 99.4 4.7E-12 1.6E-16 129.4 17.5 105 369-486 64-168 (368)
32 2ho1_A Type 4 fimbrial biogene 99.4 6E-12 2.1E-16 121.9 17.3 171 369-559 37-227 (252)
33 3sz7_A HSC70 cochaperone (SGT) 99.4 2.8E-12 9.6E-17 117.3 13.7 108 366-486 8-115 (164)
34 4eqf_A PEX5-related protein; a 99.4 2.6E-12 8.8E-17 132.0 14.7 180 365-557 95-343 (365)
35 3ieg_A DNAJ homolog subfamily 99.4 3.2E-12 1.1E-16 129.0 15.1 179 368-559 2-206 (359)
36 4gco_A Protein STI-1; structur 99.4 1.6E-12 5.6E-17 114.9 11.3 110 394-523 4-122 (126)
37 1xnf_A Lipoprotein NLPI; TPR, 99.4 8.1E-12 2.8E-16 122.0 16.6 178 368-559 42-233 (275)
38 2q7f_A YRRB protein; TPR, prot 99.4 1E-11 3.6E-16 118.8 16.8 171 362-553 50-239 (243)
39 3hym_B Cell division cycle pro 99.4 5.3E-12 1.8E-16 126.3 15.1 108 365-485 86-194 (330)
40 2hr2_A Hypothetical protein; a 99.4 1.3E-12 4.5E-17 120.6 9.3 115 368-486 10-138 (159)
41 3u4t_A TPR repeat-containing p 99.4 5.3E-12 1.8E-16 123.5 14.1 174 366-560 34-240 (272)
42 2lni_A Stress-induced-phosphop 99.4 6.8E-12 2.3E-16 108.5 13.3 109 365-486 12-120 (133)
43 2vq2_A PILW, putative fimbrial 99.4 8E-12 2.7E-16 117.8 14.8 173 368-558 7-199 (225)
44 2pzi_A Probable serine/threoni 99.4 7.5E-13 2.6E-17 149.9 8.8 139 363-522 427-574 (681)
45 3hym_B Cell division cycle pro 99.4 7.4E-12 2.5E-16 125.2 15.1 180 359-551 115-314 (330)
46 2pzi_A Probable serine/threoni 99.4 3E-12 1E-16 145.0 13.5 166 367-555 392-582 (681)
47 3gyz_A Chaperone protein IPGC; 99.3 2.7E-12 9.4E-17 117.7 10.2 114 390-516 23-138 (151)
48 2c2l_A CHIP, carboxy terminus 99.3 6.1E-12 2.1E-16 126.5 13.4 105 367-484 2-106 (281)
49 4abn_A Tetratricopeptide repea 99.3 2.6E-12 8.8E-17 139.1 11.2 163 359-542 127-325 (474)
50 3cv0_A Peroxisome targeting si 99.3 2.6E-11 8.8E-16 121.1 17.7 183 366-561 52-306 (327)
51 1a17_A Serine/threonine protei 99.3 2.6E-11 8.8E-16 109.2 14.9 107 368-487 12-118 (166)
52 3q49_B STIP1 homology and U bo 99.3 1.5E-11 5.1E-16 107.8 12.3 105 365-482 5-109 (137)
53 2vgx_A Chaperone SYCD; alterna 99.3 4.3E-12 1.5E-16 115.2 8.9 119 387-518 5-125 (148)
54 3fp2_A TPR repeat-containing p 99.3 5.8E-11 2E-15 127.6 19.1 94 368-473 24-117 (537)
55 3cv0_A Peroxisome targeting si 99.3 2.1E-11 7.2E-16 121.7 14.4 106 368-486 20-125 (327)
56 3qou_A Protein YBBN; thioredox 99.3 6.7E-12 2.3E-16 126.5 10.8 143 367-522 115-261 (287)
57 2vsy_A XCC0866; transferase, g 99.3 1.9E-11 6.4E-16 134.7 14.7 144 361-517 15-163 (568)
58 3ieg_A DNAJ homolog subfamily 99.3 1.5E-10 5.1E-15 116.7 20.2 183 366-558 151-357 (359)
59 1elw_A TPR1-domain of HOP; HOP 99.3 5.8E-11 2E-15 99.9 14.5 106 368-486 3-108 (118)
60 4g1t_A Interferon-induced prot 99.3 3.5E-11 1.2E-15 127.8 15.8 183 369-557 51-263 (472)
61 4g1t_A Interferon-induced prot 99.3 3.5E-11 1.2E-15 127.7 15.6 177 365-559 243-448 (472)
62 2dba_A Smooth muscle cell asso 99.3 4.3E-11 1.5E-15 105.5 13.5 113 361-486 20-135 (148)
63 3as5_A MAMA; tetratricopeptide 99.3 6.6E-11 2.3E-15 107.5 14.6 104 368-484 41-144 (186)
64 2vyi_A SGTA protein; chaperone 99.3 6E-11 2.1E-15 101.5 13.5 107 367-486 10-116 (131)
65 3rkv_A Putative peptidylprolyl 99.3 2.4E-11 8.1E-16 110.8 11.4 104 368-484 10-131 (162)
66 3fp2_A TPR repeat-containing p 99.3 1.2E-11 3.9E-16 133.2 10.8 176 369-558 276-479 (537)
67 2y4t_A DNAJ homolog subfamily 99.3 2E-10 6.7E-15 120.8 19.8 182 367-557 175-379 (450)
68 2yhc_A BAMD, UPF0169 lipoprote 99.3 9.2E-11 3.2E-15 113.2 15.9 110 367-486 2-132 (225)
69 2kck_A TPR repeat; tetratricop 99.2 2.3E-11 7.8E-16 101.6 9.8 105 367-484 4-111 (112)
70 2ho1_A Type 4 fimbrial biogene 99.2 2.5E-10 8.6E-15 110.3 18.5 135 368-520 70-213 (252)
71 2fo7_A Synthetic consensus TPR 99.2 7.5E-11 2.6E-15 101.0 13.1 125 370-514 2-135 (136)
72 1qqe_A Vesicular transport pro 99.2 6.1E-11 2.1E-15 119.4 14.4 142 369-517 77-234 (292)
73 3as5_A MAMA; tetratricopeptide 99.2 8.5E-11 2.9E-15 106.8 14.0 131 369-519 8-147 (186)
74 3qky_A Outer membrane assembly 99.2 1.6E-10 5.6E-15 113.4 17.0 148 369-522 52-235 (261)
75 2xev_A YBGF; tetratricopeptide 99.2 3.1E-11 1.1E-15 104.6 10.5 107 370-486 3-112 (129)
76 1p5q_A FKBP52, FK506-binding p 99.2 1.1E-10 3.6E-15 120.7 16.1 110 366-488 144-268 (336)
77 2e2e_A Formate-dependent nitri 99.2 7.4E-11 2.5E-15 108.7 13.0 116 380-515 21-148 (177)
78 2xpi_A Anaphase-promoting comp 99.2 1.1E-10 3.7E-15 127.7 16.5 179 366-557 370-566 (597)
79 1elr_A TPR2A-domain of HOP; HO 99.2 1.3E-10 4.6E-15 99.5 13.8 107 369-481 4-110 (131)
80 2ond_A Cleavage stimulation fa 99.2 8.7E-11 3E-15 119.0 14.5 189 358-560 39-260 (308)
81 2xcb_A PCRH, regulatory protei 99.2 2.2E-11 7.5E-16 108.9 8.4 116 390-518 5-122 (142)
82 3uq3_A Heat shock protein STI1 99.2 8.7E-11 3E-15 113.0 13.3 135 369-523 79-254 (258)
83 2fbn_A 70 kDa peptidylprolyl i 99.2 1.5E-10 5.1E-15 109.1 14.4 105 369-486 38-158 (198)
84 2vq2_A PILW, putative fimbrial 99.2 2.9E-10 1E-14 106.9 16.3 141 368-519 41-185 (225)
85 3mkr_A Coatomer subunit epsilo 99.2 1.4E-10 4.9E-15 117.2 14.9 143 367-522 128-275 (291)
86 3k9i_A BH0479 protein; putativ 99.2 2.5E-11 8.5E-16 104.8 7.7 93 381-486 2-97 (117)
87 1na0_A Designed protein CTPR3; 99.2 2.6E-10 8.9E-15 96.6 14.1 105 369-486 9-113 (125)
88 1ouv_A Conserved hypothetical 99.2 2.1E-10 7.1E-15 113.1 14.6 94 367-476 4-105 (273)
89 3urz_A Uncharacterized protein 99.2 7.1E-11 2.4E-15 112.9 10.7 125 375-515 60-190 (208)
90 3mkr_A Coatomer subunit epsilo 99.2 2.3E-10 7.9E-15 115.7 15.1 167 369-555 65-248 (291)
91 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.9E-10 6.4E-15 108.6 13.5 131 369-515 6-154 (213)
92 1p5q_A FKBP52, FK506-binding p 99.2 3.2E-11 1.1E-15 124.6 8.8 158 381-544 125-292 (336)
93 2xpi_A Anaphase-promoting comp 99.2 2.2E-10 7.6E-15 125.1 15.9 178 369-559 339-534 (597)
94 2r5s_A Uncharacterized protein 99.2 3.1E-11 1.1E-15 111.9 6.5 132 370-515 7-141 (176)
95 2vsy_A XCC0866; transferase, g 99.1 2.2E-10 7.5E-15 126.1 14.1 118 382-519 2-128 (568)
96 3nf1_A KLC 1, kinesin light ch 99.1 4E-10 1.4E-14 111.5 14.3 135 368-511 26-182 (311)
97 2gw1_A Mitochondrial precursor 99.1 2.7E-10 9.2E-15 121.3 13.9 108 364-484 299-406 (514)
98 1zu2_A Mitochondrial import re 99.1 1.5E-10 5.3E-15 106.6 10.3 91 380-483 13-124 (158)
99 2if4_A ATFKBP42; FKBP-like, al 99.1 5.9E-11 2E-15 122.8 8.4 136 368-516 178-333 (338)
100 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 3.3E-10 1.1E-14 122.1 14.4 109 367-488 266-389 (457)
101 2e2e_A Formate-dependent nitri 99.1 3E-10 1E-14 104.6 11.6 114 359-485 34-150 (177)
102 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 6.6E-11 2.3E-15 127.5 7.9 162 381-548 246-417 (457)
103 4gcn_A Protein STI-1; structur 99.1 3.7E-10 1.3E-14 99.5 11.1 102 401-515 6-116 (127)
104 1wao_1 Serine/threonine protei 99.1 4.9E-11 1.7E-15 129.4 5.7 133 370-515 7-154 (477)
105 1hh8_A P67PHOX, NCF-2, neutrop 99.1 8.4E-10 2.9E-14 104.1 13.1 110 368-484 36-155 (213)
106 2ond_A Cleavage stimulation fa 99.1 8.3E-10 2.8E-14 111.7 13.9 164 386-562 33-224 (308)
107 2l6j_A TPR repeat-containing p 99.1 8.7E-11 3E-15 98.7 5.3 101 368-474 3-103 (111)
108 3edt_B KLC 2, kinesin light ch 99.1 2.6E-10 8.9E-15 110.8 9.4 137 367-511 41-198 (283)
109 2gw1_A Mitochondrial precursor 99.1 1.7E-09 5.7E-14 115.2 16.2 150 366-522 335-489 (514)
110 1qqe_A Vesicular transport pro 99.1 5.7E-10 1.9E-14 112.3 11.8 147 369-523 117-281 (292)
111 2fbn_A 70 kDa peptidylprolyl i 99.1 3.7E-10 1.3E-14 106.4 9.7 169 378-553 13-192 (198)
112 4a1s_A PINS, partner of inscut 99.1 7.3E-10 2.5E-14 115.1 12.6 104 368-477 47-154 (411)
113 1ihg_A Cyclophilin 40; ppiase 99.1 7.1E-10 2.4E-14 116.4 12.4 105 369-486 223-343 (370)
114 3sf4_A G-protein-signaling mod 99.0 1.1E-09 3.9E-14 112.5 13.4 107 368-481 8-118 (406)
115 3ro2_A PINS homolog, G-protein 99.0 1.7E-09 6E-14 107.2 13.8 103 368-476 4-110 (338)
116 1ouv_A Conserved hypothetical 99.0 3.9E-09 1.3E-13 103.9 16.0 160 368-553 37-230 (273)
117 3upv_A Heat shock protein STI1 99.0 1.5E-09 5E-14 94.2 11.1 112 400-524 1-120 (126)
118 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.1E-09 1.4E-13 101.5 14.9 138 368-515 40-217 (225)
119 3ulq_A Response regulator aspa 99.0 2.8E-09 9.6E-14 110.6 14.3 132 372-510 106-252 (383)
120 3ulq_A Response regulator aspa 99.0 1E-09 3.4E-14 114.0 10.5 181 368-559 142-357 (383)
121 3rkv_A Putative peptidylprolyl 99.0 3.1E-09 1E-13 96.7 12.4 142 402-544 10-160 (162)
122 2r5s_A Uncharacterized protein 99.0 1.4E-09 4.9E-14 100.6 10.2 112 359-484 30-142 (176)
123 2kat_A Uncharacterized protein 99.0 4E-09 1.4E-13 90.1 12.2 85 386-483 2-86 (115)
124 1xnf_A Lipoprotein NLPI; TPR, 99.0 6.4E-09 2.2E-13 101.1 15.3 170 367-559 75-264 (275)
125 3qou_A Protein YBBN; thioredox 99.0 1.3E-09 4.4E-14 109.7 9.7 112 360-484 142-253 (287)
126 2fo7_A Synthetic consensus TPR 99.0 5.6E-09 1.9E-13 89.1 12.1 102 368-482 34-135 (136)
127 3sz7_A HSC70 cochaperone (SGT) 98.9 4.3E-09 1.5E-13 95.9 10.9 107 398-517 6-114 (164)
128 1hxi_A PEX5, peroxisome target 98.9 1.1E-08 3.9E-13 89.1 12.4 101 404-517 18-120 (121)
129 2hr2_A Hypothetical protein; a 98.9 2.3E-09 7.8E-14 98.9 8.2 115 402-525 10-145 (159)
130 3rjv_A Putative SEL1 repeat pr 98.9 7.1E-09 2.4E-13 99.3 11.7 122 367-511 16-158 (212)
131 3q15_A PSP28, response regulat 98.9 4.5E-09 1.6E-13 109.1 11.1 134 370-510 102-250 (378)
132 2ifu_A Gamma-SNAP; membrane fu 98.9 8.4E-09 2.9E-13 104.4 12.1 138 369-516 76-228 (307)
133 4f3v_A ESX-1 secretion system 98.9 3.2E-09 1.1E-13 107.1 8.8 137 370-523 103-248 (282)
134 3ro3_A PINS homolog, G-protein 98.9 7E-09 2.4E-13 91.5 10.1 103 369-477 9-117 (164)
135 3q15_A PSP28, response regulat 98.9 5.4E-09 1.8E-13 108.5 10.8 177 368-559 140-354 (378)
136 4a1s_A PINS, partner of inscut 98.9 4E-09 1.4E-13 109.5 9.1 184 368-559 125-361 (411)
137 3q49_B STIP1 homology and U bo 98.9 1.3E-08 4.6E-13 88.7 11.1 98 397-514 3-109 (137)
138 1na3_A Designed protein CTPR2; 98.8 1.5E-08 5.1E-13 81.8 10.2 84 368-463 8-91 (91)
139 1a17_A Serine/threonine protei 98.8 1.5E-08 5.2E-13 90.8 10.7 100 366-475 44-143 (166)
140 2dba_A Smooth muscle cell asso 98.8 3.8E-08 1.3E-12 86.3 13.0 120 396-525 21-142 (148)
141 3nf1_A KLC 1, kinesin light ch 98.8 1.8E-08 6.2E-13 99.4 11.9 138 368-513 68-226 (311)
142 3gw4_A Uncharacterized protein 98.8 1.4E-08 4.7E-13 94.4 10.3 104 368-476 25-134 (203)
143 3sf4_A G-protein-signaling mod 98.8 8E-09 2.7E-13 106.1 9.6 183 369-559 87-325 (406)
144 3dra_A Protein farnesyltransfe 98.8 3.1E-08 1.1E-12 101.3 13.6 179 368-559 66-276 (306)
145 3ma5_A Tetratricopeptide repea 98.8 1.3E-08 4.4E-13 85.5 8.8 68 365-432 3-70 (100)
146 2kc7_A BFR218_protein; tetratr 98.8 5.2E-09 1.8E-13 86.6 6.0 92 372-484 3-95 (99)
147 2qfc_A PLCR protein; TPR, HTH, 98.8 3.5E-08 1.2E-12 98.8 12.5 102 371-477 117-224 (293)
148 2lni_A Stress-induced-phosphop 98.8 2.9E-08 1E-12 85.2 10.4 101 398-518 11-120 (133)
149 3edt_B KLC 2, kinesin light ch 98.8 6.5E-08 2.2E-12 93.7 14.0 124 380-511 12-156 (283)
150 1ihg_A Cyclophilin 40; ppiase 98.8 7.7E-08 2.6E-12 100.8 15.2 140 403-543 223-368 (370)
151 3ma5_A Tetratricopeptide repea 98.8 1.7E-08 5.8E-13 84.7 7.8 74 398-484 2-75 (100)
152 1elw_A TPR1-domain of HOP; HOP 98.7 9.8E-08 3.3E-12 79.7 12.5 110 402-524 3-114 (118)
153 1dce_A Protein (RAB geranylger 98.7 1E-07 3.4E-12 105.7 15.9 168 375-555 34-240 (567)
154 1dce_A Protein (RAB geranylger 98.7 1.1E-07 3.7E-12 105.4 16.1 147 362-521 56-231 (567)
155 3dra_A Protein farnesyltransfe 98.7 1.6E-07 5.6E-12 95.9 16.2 171 372-555 35-234 (306)
156 1na0_A Designed protein CTPR3; 98.7 1.3E-07 4.5E-12 79.6 13.0 104 398-521 3-116 (125)
157 2kck_A TPR repeat; tetratricop 98.7 1.4E-08 4.7E-13 84.4 6.7 104 398-514 1-109 (112)
158 3ro2_A PINS homolog, G-protein 98.7 2.1E-08 7.2E-13 99.3 9.2 138 369-514 43-215 (338)
159 2vyi_A SGTA protein; chaperone 98.7 6.1E-08 2.1E-12 82.4 11.0 105 396-520 5-118 (131)
160 3u3w_A Transcriptional activat 98.7 3.2E-08 1.1E-12 99.1 10.6 102 373-480 119-226 (293)
161 1wao_1 Serine/threonine protei 98.7 9.3E-09 3.2E-13 111.4 6.6 113 359-484 30-155 (477)
162 2ooe_A Cleavage stimulation fa 98.7 1.2E-07 4.3E-12 103.0 15.0 151 358-522 261-431 (530)
163 2qfc_A PLCR protein; TPR, HTH, 98.7 2.2E-07 7.5E-12 93.0 14.9 134 369-511 75-225 (293)
164 1hz4_A MALT regulatory protein 98.7 1.8E-07 6.2E-12 96.1 14.5 139 369-514 14-167 (373)
165 2kat_A Uncharacterized protein 98.7 6.6E-08 2.3E-12 82.4 9.4 73 360-432 10-82 (115)
166 3u3w_A Transcriptional activat 98.7 1.8E-07 6.2E-12 93.6 14.1 123 370-501 76-206 (293)
167 2ooe_A Cleavage stimulation fa 98.7 1.2E-07 4.3E-12 103.0 13.8 143 359-514 310-457 (530)
168 2ifu_A Gamma-SNAP; membrane fu 98.7 7.7E-08 2.6E-12 97.3 11.3 109 369-486 116-230 (307)
169 2xm6_A Protein corresponding t 98.7 3.6E-07 1.2E-11 98.3 17.3 61 368-430 38-106 (490)
170 2xev_A YBGF; tetratricopeptide 98.7 1.5E-07 5E-12 81.0 10.9 108 404-525 3-119 (129)
171 3e4b_A ALGK; tetratricopeptide 98.6 1.2E-07 4.2E-12 101.6 12.6 156 369-552 176-365 (452)
172 3k9i_A BH0479 protein; putativ 98.6 4.8E-08 1.7E-12 83.9 7.5 68 366-433 24-91 (117)
173 1elr_A TPR2A-domain of HOP; HO 98.6 2.5E-07 8.7E-12 78.7 12.0 110 400-523 1-119 (131)
174 2xm6_A Protein corresponding t 98.6 5.7E-07 2E-11 96.7 17.1 62 368-431 74-143 (490)
175 1zu2_A Mitochondrial import re 98.6 3.1E-08 1.1E-12 91.2 5.6 75 358-432 25-120 (158)
176 3dss_A Geranylgeranyl transfer 98.6 1.7E-06 5.8E-11 89.2 19.1 122 385-519 90-230 (331)
177 1hz4_A MALT regulatory protein 98.6 5.3E-07 1.8E-11 92.6 15.3 101 369-476 93-201 (373)
178 3ly7_A Transcriptional activat 98.6 4E-07 1.4E-11 94.7 14.1 143 359-517 186-345 (372)
179 3ro3_A PINS homolog, G-protein 98.6 2.1E-07 7.3E-12 81.7 10.0 102 369-476 49-156 (164)
180 3bee_A Putative YFRE protein; 98.6 3E-07 1E-11 76.9 10.0 67 365-431 2-71 (93)
181 3rjv_A Putative SEL1 repeat pr 98.5 3.7E-07 1.3E-11 87.2 11.4 103 368-485 49-163 (212)
182 2if4_A ATFKBP42; FKBP-like, al 98.5 8.4E-08 2.9E-12 98.9 7.3 102 371-485 232-334 (338)
183 2c2l_A CHIP, carboxy terminus 98.5 2.6E-07 8.9E-12 92.5 10.6 103 400-515 1-105 (281)
184 1na3_A Designed protein CTPR2; 98.5 3.5E-07 1.2E-11 73.5 9.4 73 401-486 7-79 (91)
185 3n71_A Histone lysine methyltr 98.5 3.4E-07 1.2E-11 99.6 12.1 113 370-486 310-434 (490)
186 3dss_A Geranylgeranyl transfer 98.5 1.5E-06 5E-11 89.7 16.2 144 365-522 104-278 (331)
187 2l6j_A TPR repeat-containing p 98.5 6.1E-07 2.1E-11 74.8 10.6 70 402-484 3-72 (111)
188 3gw4_A Uncharacterized protein 98.5 3.9E-07 1.4E-11 84.4 10.0 102 369-476 66-174 (203)
189 3q7a_A Farnesyltransferase alp 98.5 5.5E-06 1.9E-10 85.9 19.3 162 381-555 66-256 (349)
190 4f3v_A ESX-1 secretion system 98.4 2.9E-07 9.9E-12 92.7 7.9 105 371-486 137-243 (282)
191 3q7a_A Farnesyltransferase alp 98.4 1.3E-06 4.5E-11 90.6 12.0 142 366-520 85-246 (349)
192 3e4b_A ALGK; tetratricopeptide 98.3 3E-06 1E-10 90.7 13.5 157 368-553 140-330 (452)
193 3qww_A SET and MYND domain-con 98.3 1.8E-06 6.1E-11 92.4 10.9 108 374-485 303-422 (433)
194 3qwp_A SET and MYND domain-con 98.3 2.7E-06 9.2E-11 90.9 11.5 112 370-485 288-411 (429)
195 3bee_A Putative YFRE protein; 98.3 3.5E-06 1.2E-10 70.3 9.5 74 399-485 2-78 (93)
196 2kc7_A BFR218_protein; tetratr 98.3 1.5E-06 5.3E-11 71.4 7.0 90 406-514 3-93 (99)
197 4b4t_Q 26S proteasome regulato 98.2 5.7E-06 2E-10 86.3 12.0 143 369-513 4-206 (434)
198 1klx_A Cysteine rich protein B 98.2 3.3E-06 1.1E-10 75.3 8.5 87 375-477 31-125 (138)
199 2v5f_A Prolyl 4-hydroxylase su 98.2 7E-06 2.4E-10 69.5 9.2 72 366-442 2-80 (104)
200 3u64_A Protein TP_0956; tetrat 98.1 1.8E-05 6.1E-10 79.5 11.4 105 368-485 151-276 (301)
201 1pc2_A Mitochondria fission pr 98.0 2.6E-05 8.8E-10 71.0 10.8 89 387-486 16-107 (152)
202 2v5f_A Prolyl 4-hydroxylase su 98.0 1.4E-05 4.9E-10 67.5 8.6 79 402-486 4-82 (104)
203 3n71_A Histone lysine methyltr 98.0 1.8E-05 6.3E-10 85.9 10.0 103 369-475 351-461 (490)
204 1xi4_A Clathrin heavy chain; a 97.9 8.5E-05 2.9E-09 88.3 15.1 104 363-474 1099-1220(1630)
205 1klx_A Cysteine rich protein B 97.9 3E-05 1E-09 69.0 8.8 77 383-477 9-89 (138)
206 3mv2_B Coatomer subunit epsilo 97.9 9E-05 3.1E-09 75.5 12.3 136 369-522 136-293 (310)
207 3mv2_B Coatomer subunit epsilo 97.8 0.00017 5.8E-09 73.4 14.1 106 368-482 99-210 (310)
208 1xi4_A Clathrin heavy chain; a 97.7 0.00037 1.3E-08 82.9 16.5 88 367-474 1132-1246(1630)
209 1pc2_A Mitochondria fission pr 97.6 8.5E-05 2.9E-09 67.6 6.5 79 359-442 22-105 (152)
210 3ly7_A Transcriptional activat 97.5 0.00012 4.2E-09 76.0 7.8 110 361-484 225-344 (372)
211 3ffl_A Anaphase-promoting comp 97.5 0.00026 8.9E-09 65.0 8.2 105 370-474 21-147 (167)
212 4e6h_A MRNA 3'-END-processing 97.4 0.0037 1.3E-07 70.4 18.4 155 358-519 332-507 (679)
213 3u64_A Protein TP_0956; tetrat 97.3 0.00085 2.9E-08 67.3 10.6 113 392-515 140-273 (301)
214 1b89_A Protein (clathrin heavy 97.3 0.00059 2E-08 72.7 9.6 51 371-429 124-174 (449)
215 4e6h_A MRNA 3'-END-processing 97.3 0.00066 2.2E-08 76.5 10.0 169 366-546 375-573 (679)
216 4b4t_Q 26S proteasome regulato 97.2 0.00057 2E-08 70.9 8.5 103 369-476 135-243 (434)
217 3qww_A SET and MYND domain-con 97.1 0.00071 2.4E-08 72.2 7.3 74 369-442 340-421 (433)
218 1nzn_A CGI-135 protein, fissio 97.1 0.0027 9.3E-08 55.7 9.6 91 385-486 17-110 (126)
219 3qwp_A SET and MYND domain-con 97.0 0.0014 4.8E-08 69.8 8.3 89 369-461 329-425 (429)
220 1b89_A Protein (clathrin heavy 96.8 0.0094 3.2E-07 63.4 13.3 91 371-483 150-240 (449)
221 1nzn_A CGI-135 protein, fissio 95.6 0.013 4.3E-07 51.5 5.1 74 365-443 31-109 (126)
222 3mkq_B Coatomer subunit alpha; 94.8 0.22 7.4E-06 46.2 11.2 99 367-477 6-116 (177)
223 1y8m_A FIS1; mitochondria, unk 94.8 0.43 1.5E-05 42.5 12.4 96 365-486 15-113 (144)
224 3o48_A Mitochondria fission 1 94.5 0.12 4E-06 45.6 8.0 75 364-443 35-113 (134)
225 4h7y_A Dual specificity protei 94.4 0.17 5.9E-06 45.6 8.9 114 396-523 6-135 (161)
226 3o48_A Mitochondria fission 1 94.1 0.26 8.9E-06 43.4 9.4 96 365-486 16-114 (134)
227 2ff4_A Probable regulatory pro 94.0 0.82 2.8E-05 47.5 14.8 94 370-475 116-231 (388)
228 4b4t_R RPN7, 26S proteasome re 94.0 0.51 1.7E-05 49.8 13.4 101 371-477 133-236 (429)
229 1y8m_A FIS1; mitochondria, unk 93.6 0.23 7.8E-06 44.3 8.2 73 366-443 36-112 (144)
230 4g26_A Pentatricopeptide repea 93.3 0.36 1.2E-05 52.1 11.0 97 368-475 104-201 (501)
231 2uy1_A Cleavage stimulation fa 92.9 1.3 4.3E-05 47.6 14.5 122 388-519 198-357 (493)
232 2uy1_A Cleavage stimulation fa 92.9 0.47 1.6E-05 50.9 11.1 113 359-486 203-356 (493)
233 4h7y_A Dual specificity protei 92.7 0.44 1.5E-05 42.9 8.6 106 365-484 9-128 (161)
234 3ffl_A Anaphase-promoting comp 91.8 0.35 1.2E-05 44.2 7.0 61 369-429 63-148 (167)
235 1zbp_A Hypothetical protein VP 91.3 1.2 4E-05 43.9 10.7 56 377-432 5-60 (273)
236 4gns_B Protein CSD3, chitin bi 91.0 0.26 8.7E-06 55.9 6.4 61 369-429 337-397 (754)
237 2ff4_A Probable regulatory pro 90.7 0.49 1.7E-05 49.2 7.8 62 371-432 173-234 (388)
238 1ya0_A SMG-7 transcript varian 90.4 0.37 1.3E-05 52.0 6.7 60 372-431 155-214 (497)
239 3mkq_A Coatomer beta'-subunit; 88.7 1.5 5.2E-05 48.8 10.5 91 379-474 662-761 (814)
240 3mkq_A Coatomer beta'-subunit; 88.5 1.1 3.8E-05 50.0 9.2 102 355-474 667-774 (814)
241 4g26_A Pentatricopeptide repea 86.5 9.5 0.00033 40.8 14.8 82 385-477 86-168 (501)
242 3kae_A CDC27, possible protein 85.3 7.4 0.00025 35.7 10.8 93 373-474 37-139 (242)
243 3txn_A 26S proteasome regulato 83.7 4.2 0.00014 42.3 9.9 99 373-476 103-208 (394)
244 4gns_B Protein CSD3, chitin bi 82.6 2.6 8.9E-05 47.7 8.2 76 387-474 303-396 (754)
245 1qsa_A Protein (soluble lytic 82.1 3.6 0.00012 45.4 9.1 83 382-477 265-347 (618)
246 1ya0_A SMG-7 transcript varian 79.6 5.5 0.00019 42.8 9.2 65 405-481 154-218 (497)
247 3spa_A Mtrpol, DNA-directed RN 71.2 13 0.00043 43.5 9.6 96 371-477 129-229 (1134)
248 4b4t_P 26S proteasome regulato 71.0 29 0.00099 36.4 12.0 101 371-476 139-245 (445)
249 3mkq_B Coatomer subunit alpha; 70.1 64 0.0022 29.4 12.5 55 402-477 7-61 (177)
250 3kae_A CDC27, possible protein 67.0 78 0.0027 29.1 12.5 65 368-432 61-143 (242)
251 2ijq_A Hypothetical protein; s 65.7 14 0.00047 33.4 6.9 67 367-433 30-105 (161)
252 4gq2_M Nucleoporin NUP120; bet 65.0 50 0.0017 38.2 13.3 106 374-485 815-933 (950)
253 4b4t_S RPN3, 26S proteasome re 64.6 44 0.0015 35.9 11.7 58 372-431 234-298 (523)
254 4fhn_B Nucleoporin NUP120; pro 64.5 13 0.00044 44.1 8.4 101 367-474 840-963 (1139)
255 3o10_A Sacsin; all-helical dom 64.5 23 0.0008 31.0 8.1 15 417-431 4-18 (141)
256 4b4t_S RPN3, 26S proteasome re 63.8 18 0.00063 38.8 8.6 114 363-484 175-304 (523)
257 3txn_A 26S proteasome regulato 58.1 95 0.0033 32.0 12.6 63 407-475 103-165 (394)
258 2w2u_A Hypothetical P60 katani 57.5 8 0.00027 30.9 3.4 20 414-433 30-49 (83)
259 2v6y_A AAA family ATPase, P60 57.1 8.1 0.00028 30.8 3.4 32 387-433 10-41 (83)
260 4fhn_B Nucleoporin NUP120; pro 52.6 1.1E+02 0.0038 36.0 13.6 105 375-484 818-934 (1139)
261 3t5x_A PCI domain-containing p 52.2 65 0.0022 29.9 9.4 32 452-484 17-48 (203)
262 1qsa_A Protein (soluble lytic 52.2 14 0.00049 40.7 5.5 100 377-476 293-408 (618)
263 1zbp_A Hypothetical protein VP 51.6 28 0.00096 34.1 6.8 60 413-485 7-66 (273)
264 1wy6_A Hypothetical protein ST 49.2 41 0.0014 29.8 6.7 61 371-431 92-153 (172)
265 3ax2_A Mitochondrial import re 48.5 12 0.00042 29.1 3.0 32 452-484 20-51 (73)
266 3lpz_A GET4 (YOR164C homolog); 47.9 1.6E+02 0.0054 29.7 11.9 26 401-426 134-159 (336)
267 2cfu_A SDSA1; SDS-hydrolase, l 46.7 17 0.00057 40.4 4.9 52 368-419 448-499 (658)
268 3re2_A Predicted protein; meni 45.8 76 0.0026 32.4 8.9 65 368-432 254-325 (472)
269 3ax2_A Mitochondrial import re 45.1 26 0.00088 27.3 4.3 29 373-401 21-49 (73)
270 1om2_A Protein (mitochondrial 45.1 27 0.00091 28.6 4.6 44 438-482 9-52 (95)
271 4a5x_A MITD1, MIT domain-conta 43.1 7.4 0.00025 31.3 1.0 20 414-433 27-46 (86)
272 4b4t_R RPN7, 26S proteasome re 42.9 43 0.0015 34.8 7.2 66 402-476 130-195 (429)
273 4a5x_A MITD1, MIT domain-conta 42.8 30 0.001 27.7 4.6 32 366-397 13-44 (86)
274 1wfd_A Hypothetical protein 15 42.7 18 0.00063 29.3 3.4 32 387-433 14-45 (93)
275 2yhe_A SEC-alkyl sulfatase; hy 47.8 5.5 0.00019 44.4 0.0 54 369-422 461-514 (668)
276 2w2u_A Hypothetical P60 katani 41.0 18 0.00061 28.8 3.0 30 369-398 19-48 (83)
277 2crb_A Nuclear receptor bindin 40.5 43 0.0015 27.2 5.1 29 403-431 15-43 (97)
278 2v6y_A AAA family ATPase, P60 40.2 19 0.00064 28.6 3.0 30 369-398 11-40 (83)
279 4gq4_A Menin; tumor suppressor 37.0 1.2E+02 0.0041 31.6 8.9 65 368-432 261-332 (489)
280 2crb_A Nuclear receptor bindin 36.4 24 0.00081 28.8 2.9 29 369-397 15-43 (97)
281 3spa_A Mtrpol, DNA-directed RN 34.9 2.3E+02 0.0078 33.2 11.9 67 403-477 127-193 (1134)
282 2rpa_A Katanin P60 ATPase-cont 34.6 26 0.00088 27.6 2.9 24 409-432 18-41 (78)
283 3u84_A Menin; MLL, JUND, ledgf 34.2 1.4E+02 0.0049 31.0 8.9 64 369-432 277-347 (550)
284 2wpv_A GET4, UPF0363 protein Y 32.7 1.8E+02 0.0062 28.9 9.5 23 451-473 136-158 (312)
285 4b4t_P 26S proteasome regulato 32.4 4.3E+02 0.015 27.2 13.0 65 405-475 139-203 (445)
286 3lpz_A GET4 (YOR164C homolog); 32.1 2.2E+02 0.0075 28.6 10.1 21 452-472 139-159 (336)
287 2v6x_A Vacuolar protein sortin 29.3 35 0.0012 26.9 3.0 32 387-433 12-43 (85)
288 1wfd_A Hypothetical protein 15 29.1 35 0.0012 27.6 3.0 30 369-398 15-44 (93)
289 1pyv_A ATP synthase beta chain 28.5 41 0.0014 23.2 2.6 17 1-17 1-17 (54)
290 3t5v_B Nuclear mRNA export pro 28.0 1.6E+02 0.0055 30.9 8.6 147 407-564 180-342 (455)
291 2cwy_A Hypothetical protein TT 27.2 81 0.0028 25.5 4.8 59 373-433 5-69 (94)
292 1om2_A Protein (mitochondrial 26.9 27 0.00093 28.6 1.8 27 373-399 24-50 (95)
293 2cpt_A SKD1 protein, vacuolar 25.9 36 0.0012 28.9 2.5 32 387-433 17-48 (117)
294 3re2_A Predicted protein; meni 24.4 2.8E+02 0.0096 28.4 9.0 70 401-477 253-324 (472)
295 2rpa_A Katanin P60 ATPase-cont 22.1 78 0.0027 24.8 3.6 30 369-398 12-41 (78)
296 3t5x_A PCI domain-containing p 22.0 96 0.0033 28.7 5.0 30 403-432 14-43 (203)
297 4a1g_A Mitotic checkpoint seri 21.9 2.8E+02 0.0097 24.4 7.7 48 385-432 81-130 (152)
298 1z65_A PRPLP, prion-like prote 21.9 54 0.0018 20.6 2.0 15 118-133 5-19 (30)
299 2cpt_A SKD1 protein, vacuolar 20.8 3.5E+02 0.012 22.6 7.8 31 368-398 17-47 (117)
300 4gq4_A Menin; tumor suppressor 20.7 3.5E+02 0.012 28.2 9.0 70 401-477 260-331 (489)
301 2v6x_A Vacuolar protein sortin 20.2 1.5E+02 0.0051 23.1 5.1 29 369-397 13-41 (85)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=8.6e-16 Score=148.39 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=135.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
|.+++.++.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|+++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~--- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYL--- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---
Confidence 3467789999999999999999999999999999999999999999999999999999999999765 46544
Q ss_pred hHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435 446 DLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANIT 505 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~-----------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l 505 (565)
.++..+|.++..+ |++++|++.|++ +..++|+++.... .+|..+ ++++
T Consensus 74 ----~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~P~~~~~~~-------~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 74 ----GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD-AERVNPRYAPLHL-------QRGLVYALLGERDKAEASL 141 (217)
T ss_dssp ----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH-HHHhCcccHHHHH-------HHHHHHHHcCChHHHHHHH
Confidence 4678899999999 999999999999 6778999886533 444444 8999
Q ss_pred HHHHhcCCCcHHHHH-------hhhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHHHh
Q 008435 506 FLIFATSPSIINLLT-------VSNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 506 ~~Al~l~P~~~~~l~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+++++++ +...++. ..++.++..+.+..+ ..+.++++|.++|.+|..+|+-.+
T Consensus 142 ~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 142 KQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 9999999 7665443 333444444333332 235688999999999998887544
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.63 E-value=2.1e-15 Score=133.57 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=100.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
..+|..++.+..+|..+++.|++++|+..|++|++.+|+++.+|+.+|.++...|++++|++.|++|+++ +|++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 81 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFI 81 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhh
Confidence 3344457889999999999999999999999999999999999999999999999999999999999775 46544
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~ 487 (565)
.+++.+|.++..+|++++|++.|++ +..++|+++...
T Consensus 82 -------~a~~~lg~~~~~~~~~~~A~~~~~~-al~l~P~~~~a~ 118 (126)
T 4gco_A 82 -------KGYIRKAACLVAMREWSKAQRAYED-ALQVDPSNEEAR 118 (126)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred -------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence 4788999999999999999999999 777999998653
No 3
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.1e-14 Score=135.27 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+..|+++++.||+++.+++.+|.++...|++++|++.+++++.. +|+++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~----- 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSA----- 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhH-----
Confidence 57789999999999999999999999999999999999999999999999999999999999764 34433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHh----
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTV---- 521 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~---- 521 (565)
.++..+|.++...+++++|++.+++ +...+|+++.........+..++..- +++++++++++|+...++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~a~~~~~~-a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 74 --EAYYILGSANFMIDEKQAAIDALQR-AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3567789999999999999999999 66788888754332211111112111 78999999999987765433
Q ss_pred ---hhhhhHHHhhhhhhhhhhhhhhhccchhHH
Q 008435 522 ---SNIIDIIYVNCYELKKKRFASCFFGFSVLY 551 (565)
Q Consensus 522 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (565)
.++.+++.+.+..+.+..=.++.++||+++
T Consensus 151 ~~~~g~~~~A~~~~~~al~~~p~~a~~~lali~ 183 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEKEEKKAKYELALVP 183 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTHHHHHHCSCCSC
T ss_pred HHHCCCHHHHHHHHHHHHhCCccCHHHHHHhhC
Confidence 233334444333333332235667777654
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=5.9e-15 Score=168.12 Aligned_cols=136 Identities=18% Similarity=0.106 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
|.+++.+..+|..+.+.|++++|+.+|++|++++|+++.+|+++|.+|.+.|++++|+++|++|+++ +|+++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~--- 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA--- 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---
Confidence 4468899999999999999999999999999999999999999999999999999999999999775 46654
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSII 516 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~ 516 (565)
.+++++|.++..+|++++|++.|++ +..++|+++.... ++|..+ +++|+++++++|++.
T Consensus 78 ----~a~~nLg~~l~~~g~~~~A~~~~~k-Al~l~P~~~~a~~-------~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 78 ----DAYSNMGNTLKEMQDVQGALQCYTR-AIQINPAFADAHS-------NLASIHKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 5788999999999999999999999 6778999876533 455444 899999999999987
Q ss_pred HHHHh
Q 008435 517 NLLTV 521 (565)
Q Consensus 517 ~~l~~ 521 (565)
+++.+
T Consensus 146 ~a~~~ 150 (723)
T 4gyw_A 146 DAYCN 150 (723)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76544
No 5
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=3.5e-15 Score=157.74 Aligned_cols=181 Identities=8% Similarity=-0.025 Sum_probs=123.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcCCC
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~~eA~~~~~rAl~l~~l~~~P 439 (565)
.+...+.+++.+..+|..+...|++++|+..++++|+++|++..+|+.+|.++...|+ +++|+++|++|+++ +|
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P 163 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QP 163 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CT
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CC
Confidence 3344444577788888888889999999999999999999999999999999999996 99999999999765 46
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHH
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIIN 517 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~ 517 (565)
+++ .+|+++|.++..+|++++|++.|++ +..++|++...+.+...++..++..- +++++++++++|++..
T Consensus 164 ~~~-------~a~~~~g~~~~~~g~~~eAl~~~~k-al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 164 KNY-------QVWHHRRVLVEWLRDPSQELEFIAD-ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp TCH-------HHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred CCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 544 4677788888888888888888888 66678887754332111111111111 7788888888887766
Q ss_pred HHHhhhhh--------hHH--------HhhhhhhhhhhhhhhhccchhHHHHHH
Q 008435 518 LLTVSNII--------DII--------YVNCYELKKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 518 ~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (565)
+|...... ++. ++.+.. ....++++|+++|.+|...+
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~-l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-LVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHccC
Confidence 55332211 111 122222 23457778888877776644
No 6
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=3.5e-14 Score=136.60 Aligned_cols=143 Identities=15% Similarity=0.020 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
+.+++.++..|..+...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+++|+++++. +|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~--- 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNL--- 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSH---
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----Ccch---
Confidence 45789999999999999999999999999999999 99999999999999999999999999999764 3542
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC-
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS- 514 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~- 514 (565)
..++..+|.++..+|++++|++.|++ +...+|+++.....+...+..+|..+ +++++++++++|+
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 76 ----ANAYIGKSAAYRDMKNNQEYIATLTE-GIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK 150 (228)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 24688899999999999999999999 67789998865444445555666655 7788888888887
Q ss_pred -cHHHHHh
Q 008435 515 -IINLLTV 521 (565)
Q Consensus 515 -~~~~l~~ 521 (565)
...++..
T Consensus 151 ~~~~~~~~ 158 (228)
T 4i17_A 151 WKTDALYS 158 (228)
T ss_dssp HHHHHHHH
T ss_pred ccHHHHHH
Confidence 6555433
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=3e-14 Score=137.52 Aligned_cols=150 Identities=14% Similarity=0.153 Sum_probs=122.5
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----------GLLEEAVEYLE 427 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-----------g~~~eA~~~~~ 427 (565)
.+.+...|.+++.++.+|..+.+.|++++|+..++++++++|+++.+++.+|.++... |++++|++.|+
T Consensus 29 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 29 ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108 (217)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence 4456667778999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHH
Q 008435 428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANIT 505 (565)
Q Consensus 428 rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l 505 (565)
+++++ +|+++ .++..+|.++..+|++++|++.|++ +..++ +++.........+...+..- ++.+
T Consensus 109 ~al~~-----~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 109 DAERV-----NPRYA-------PLHLQRGLVYALLGERDKAEASLKQ-ALALE-DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHh-----CcccH-------HHHHHHHHHHHHcCChHHHHHHHHH-HHhcc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99765 46544 4678899999999999999999999 55566 66654332222222222222 8999
Q ss_pred HHHHhcCCCcHHHHHhh
Q 008435 506 FLIFATSPSIINLLTVS 522 (565)
Q Consensus 506 ~~Al~l~P~~~~~l~~~ 522 (565)
+++++.+|+...++...
T Consensus 175 ~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 175 AKALEQAPKDLDLRVRY 191 (217)
T ss_dssp HHHHHHSTTCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHH
Confidence 99999999988776554
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2.5e-14 Score=151.17 Aligned_cols=184 Identities=8% Similarity=0.010 Sum_probs=144.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCC-CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~-~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
.+.+...+.++..++.+|..+...|+ +++|+..|++|++++|+++.+|+.+|.++...|++++|+++|++|+++
T Consensus 121 ~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----- 195 (382)
T 2h6f_A 121 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ----- 195 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 34445556678999999999999997 999999999999999999999999999999999999999999999765
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHH-----H---HHHHHHHH
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARY-----V---ANITFLIF 509 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~-----l---~~~l~~Al 509 (565)
+|++. .+|+++|.++..+|++++|++.|++ +..++|+++..+.+....+..+... . ++++++++
T Consensus 196 dP~~~-------~a~~~lg~~~~~~g~~~eAl~~~~~-al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 196 DAKNY-------HAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp CTTCH-------HHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred CccCH-------HHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 56654 5788999999999999999999999 7779999987644332222221110 0 37899999
Q ss_pred hcCCCcHHHHHhhh---------hhhHHHhhhhhh-hhhhhhhhhccchhHHHHHH
Q 008435 510 ATSPSIINLLTVSN---------IIDIIYVNCYEL-KKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 510 ~l~P~~~~~l~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 555 (565)
+++|++..++.... +.+++.+.+.++ .......++..+|.+|..++
T Consensus 268 ~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 268 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 99999887664421 233444444333 33557788999999999875
No 9
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.56 E-value=1.3e-14 Score=133.41 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=100.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
+.+...|.+++.++.+|..+.+.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+++|++|+++ +|
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P 101 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GK 101 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CC
Confidence 4455556678899999999999999999999999999999999999999999999999999999999999765 57
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+++ .+++++|.++..+|++++|++.|++ +..++|+.+
T Consensus 102 ~~~-------~~~~~lg~~~~~lg~~~eA~~~~~~-al~l~~~~~ 138 (151)
T 3gyz_A 102 NDY-------TPVFHTGQCQLRLKAPLKAKECFEL-VIQHSNDEK 138 (151)
T ss_dssp SCC-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHH
T ss_pred CCc-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCHH
Confidence 655 4688999999999999999999999 666777755
No 10
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=2.2e-13 Score=130.51 Aligned_cols=108 Identities=7% Similarity=0.096 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~----------------LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+++.++..|..+...|++++|+.+|+++++.+|+++.+|+. +|.++...|++++|+++|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999 99999999999999999999976
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 432 l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
+ +|+++ .++..+|.++...|++++|++.|++ +..++|+++....
T Consensus 83 ~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~P~~~~a~~ 126 (208)
T 3urz_A 83 K-----APNNV-------DCLEACAEMQVCRGQEKDALRMYEK-ILQLEADNLAANI 126 (208)
T ss_dssp H-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHHHHH
T ss_pred H-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHH
Confidence 5 46554 4688899999999999999999999 7779999986543
No 11
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=2e-13 Score=147.89 Aligned_cols=180 Identities=12% Similarity=0.006 Sum_probs=143.2
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 366 NLTPKELIALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~-~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
+.++..++.+|..+...|++ ++|+.+|++|++++|+++.+|+.+|.+|...|++++|+++|++|+++ +|+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---- 169 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN---- 169 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC----
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC----
Confidence 34688999999999999999 99999999999999999999999999999999999999999999653 343
Q ss_pred hhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH--------HHHH--HHHH
Q 008435 445 IDLLIVASQWSGVACIRQ---------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL--------ARYV--ANIT 505 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~---------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L--------a~~l--~~~l 505 (565)
..++.++|.++..+ |++++|++.|++ +..++|+++..+..+...+..+ +... +++|
T Consensus 170 ----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 170 ----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL-AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp ----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 14688899999999 999999999999 6778999987655444444444 4344 8999
Q ss_pred HHHHhcCC---CcHHHHHh-------hhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHHHh
Q 008435 506 FLIFATSP---SIINLLTV-------SNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 506 ~~Al~l~P---~~~~~l~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+++++++| +...++.. .++.+++.+.+.++ ..+.+.+++.++|.+|..++...+
T Consensus 245 ~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 76654433 23333443333322 235588999999999999986543
No 12
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=1.4e-13 Score=125.12 Aligned_cols=116 Identities=12% Similarity=0.073 Sum_probs=103.2
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
+.+.+...+.+++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 84 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----- 84 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 445566666678899999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
+|+++ .+++++|.++..+|++++|++.|++ +..++|+++..
T Consensus 85 ~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEP-------RFPFHAAECLLQXGELAEAESGLFL-AQELIANXPEF 125 (148)
T ss_dssp STTCT-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTCGGG
T ss_pred CCCCc-------hHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCCcc
Confidence 46654 4678899999999999999999999 66788888754
No 13
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.50 E-value=1.8e-14 Score=131.23 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=73.6
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~ 454 (565)
+|..+..+|+.++|+..+++++..+|+++.+++.+|.+|...|++++|+++|++++++ +|+++ .++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~-------~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDP-------KAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHH
Confidence 3444455566666666666666666666666666666666666666666666666543 34433 35566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HH-HHHHHHhcCCCcHHHHH
Q 008435 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------AN-ITFLIFATSPSIINLLT 520 (565)
Q Consensus 455 lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~-~l~~Al~l~P~~~~~l~ 520 (565)
+|.++...|++++|+..|++ +..++|+++.... .+|..+ ++ +++++++++|++..++.
T Consensus 71 lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~-------~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRR-SVELNPTQKDLVL-------KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHH-HHHhCCCCHHHHH-------HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 66666666666666666666 4456666654322 333333 22 34666666666655543
No 14
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=3.3e-13 Score=129.73 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.+...++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|++++++ +|+++....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 114 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEK 114 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHH
Confidence 456788889999999999999999999999999999999999999999999999999999999765 466553333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC--Cchh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--EPKS 486 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~--~~~~ 486 (565)
....++..+|.++...|++++|++.|++ +...+|+ ++..
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~ 155 (228)
T 4i17_A 115 LYAIYYLKEGQKFQQAGNIEKAEENYKH-ATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HTTSSCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhccHHHHHHHHHH-HHhcCCCcccHHH
Confidence 3345788899999999999999999999 6667777 5543
No 15
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=1.6e-13 Score=142.45 Aligned_cols=171 Identities=14% Similarity=0.061 Sum_probs=135.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.+.+++.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++. +|+++
T Consensus 199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-- 271 (388)
T 1w3b_A 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP-- 271 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH--
Confidence 34467889999999999999999999999999999999999999999999999999999999999654 46544
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI 515 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~ 515 (565)
.++..+|.++...|++++|++.|++ +...+|.++.... .++..+ .+.++++++.+|+.
T Consensus 272 -----~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 272 -----DAYCNLANALKEKGSVAEAEDCYNT-ALRLCPTHADSLN-------NLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp -----HHHHHHHHHHHHHSCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3577899999999999999999999 6668888875432 444444 78999999999997
Q ss_pred HHHHHh-------hhhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435 516 INLLTV-------SNIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 516 ~~~l~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 555 (565)
...+.. .++.++..+.+.++ ..+.+.++|+++|.+|.+++
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 654432 23333333333222 23559999999999987754
No 16
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=1.8e-13 Score=122.74 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=100.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
.+...+.+.+.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++ +|+
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~ 84 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----DIN 84 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence 344445567889999999999999999999999999999999999999999999999999999999999765 466
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
++ .+++++|.++...|++++|++.|++ +..++|+++..
T Consensus 85 ~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~ 122 (142)
T 2xcb_A 85 EP-------RFPFHAAECHLQLGDLDGAESGFYS-ARALAAAQPAH 122 (142)
T ss_dssp CT-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTCGGG
T ss_pred Cc-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCcch
Confidence 54 3578899999999999999999999 66688888754
No 17
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.48 E-value=1.4e-12 Score=128.28 Aligned_cols=188 Identities=13% Similarity=0.052 Sum_probs=137.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
..+.+++.++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.++...|++++|++.|+++++. +|+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p~ 84 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQI 84 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CCC
Confidence 345679999999999999999999999999999999999 999999999999999999999999999765 354
Q ss_pred ChhhhhHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhccCCCCchhhhhh----------hhHHHHHHHHH-
Q 008435 441 EPEAIDLLIVASQWSGVACIR--------QEKWEEGIAHLERIGNLKEPEEPKSKAHY----------YDGLVVLARYV- 501 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~--------~g~~~eAi~~leraa~~l~P~~~~~~~~~----------~~~~~~La~~l- 501 (565)
++. ...+++.+|.++.. .|++++|++.|++ +...+|+++...... ......+|..+
T Consensus 85 ~~~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 85 DPR----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL-FIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp CTT----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH-HHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH-HHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 23578899999999 9999999999999 666889887543211 00013455554
Q ss_pred --------HHHHHHHHhcCCC---cHHHHHhh-----------------hhhhHHHhhhhhhhh-----hhhhhhhccch
Q 008435 502 --------ANITFLIFATSPS---IINLLTVS-----------------NIIDIIYVNCYELKK-----KRFASCFFGFS 548 (565)
Q Consensus 502 --------~~~l~~Al~l~P~---~~~~l~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 548 (565)
++.++++++.+|+ ..+++... ++.+++...+..+.+ ....+++..++
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 8899999999998 33332222 222223222222221 22345677788
Q ss_pred hHHHHHHHHHhhh
Q 008435 549 VLYVMLVAMLKLR 561 (565)
Q Consensus 549 ~~~~~~~~~~~~~ 561 (565)
.++..++...+-.
T Consensus 240 ~~~~~~~~~~~~~ 252 (261)
T 3qky_A 240 RARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHhhhhh
Confidence 8888777765543
No 18
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.4e-13 Score=134.75 Aligned_cols=171 Identities=8% Similarity=-0.020 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++.++..|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. |.++ +.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~---~~ 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK------VNAT---KA 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCTT---TC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------cCch---hH
Confidence 56778999999999999999999999999999999999999999999999999999999999642 3222 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL 518 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~ 518 (565)
...++..+|.++...|++++|+++|++ +...+|.++.... .+|..+ +++++++++.+|+....
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQA-AVDRDTTRLDMYG-------QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCTHHHH-------HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcCcccHHHHH-------HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 234577899999999999999999999 6668888875433 444444 78899999999987765
Q ss_pred HHhhh-------hhhHH---HhhhhhhhhhhhhhhhccchhHHHHHHH
Q 008435 519 LTVSN-------IIDII---YVNCYELKKKRFASCFFGFSVLYVMLVA 556 (565)
Q Consensus 519 l~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (565)
+.... +.+++ ++...+.. +.+.++|.++|.+|..+++
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCc
Confidence 54433 12222 22233332 3467888899999887764
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=2.8e-13 Score=154.34 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=118.2
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+.+++.++.+|..+.+.|++++|+..|++|++++|+++++|+.+|.++...|++++|+++|++|+++ +
T Consensus 33 ~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~ 107 (723)
T 4gyw_A 33 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N 107 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 44555566689999999999999999999999999999999999999999999999999999999999999775 4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIF 509 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al 509 (565)
|+++ .++.++|.+|..+|++++|++.|++ +..++|+++.... ++|..+ .+.+++++
T Consensus 108 P~~~-------~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~l~P~~~~a~~-------~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 108 PAFA-------DAHSNLASIHKDSGNIPEAIASYRT-ALKLKPDFPDAYC-------NLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHH-------HHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHh-------hhhhHHHhcccHHHHHHHHHHHH
Confidence 6554 4788999999999999999999999 7779999886533 555554 78888888
Q ss_pred hcCCCc
Q 008435 510 ATSPSI 515 (565)
Q Consensus 510 ~l~P~~ 515 (565)
++.|+.
T Consensus 173 ~l~~~~ 178 (723)
T 4gyw_A 173 SIVADQ 178 (723)
T ss_dssp HHHHHH
T ss_pred HhChhH
Confidence 876653
No 20
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=4.1e-13 Score=118.69 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+..+.++|..+...|++++|+.+|++|++++|+++.+|..+|.+|...|++++|++.|++|+++. |++.......
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cccchhhHHH
Confidence 55677899999999999999999999999999999999999999999999999999999998764 3322222333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
..++..+|.++..+|++++|+++|++ +...+|+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~k-al~~~~~ 115 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHR-SLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcC
Confidence 45788999999999999999999999 5545553
No 21
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.45 E-value=1.9e-13 Score=124.32 Aligned_cols=115 Identities=11% Similarity=0.041 Sum_probs=99.2
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
...+...+.++..++.+|..+.+.|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+.+|++++++ +
T Consensus 21 ~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~ 95 (150)
T 4ga2_A 21 QGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----N 95 (150)
T ss_dssp HHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----C
Confidence 34444445556678899999999999999999999999999999999999999999999999999999999765 4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHhhccCCCCchh
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH-LERIGNLKEPEEPKS 486 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~-leraa~~l~P~~~~~ 486 (565)
|+++ .+++++|.++...|++++|.+. +++ +..++|+++..
T Consensus 96 p~~~-------~~~~~la~~~~~~~~~~~aa~~~~~~-al~l~P~~~~~ 136 (150)
T 4ga2_A 96 PTQK-------DLVLKIAELLCKNDVTDGRAKYWVER-AAKLFPGSPAV 136 (150)
T ss_dssp TTCH-------HHHHHHHHHHHHHCSSSSHHHHHHHH-HHHHSTTCHHH
T ss_pred CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHH-HHHhCcCCHHH
Confidence 6654 4688899999999999887765 588 77799999864
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=5.5e-13 Score=137.02 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+..++.+|..+...|++++|+.+|+++++.+|+++.+|+.+|.++...|++++|+++|++++++ +|++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~------ 133 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNNL------ 133 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH------
Confidence 3346667777777777777777777777777777777777777777777777777777777543 23322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
.++..+|.++..+|++++|++.|++ +...+|+
T Consensus 134 -~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~ 165 (365)
T 4eqf_A 134 -KALMALAVSYTNTSHQQDACEALKN-WIKQNPK 165 (365)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCHH
T ss_pred -HHHHHHHHHHHccccHHHHHHHHHH-HHHhCcc
Confidence 3455566666666666666666666 3334443
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=1.2e-12 Score=135.87 Aligned_cols=62 Identities=27% Similarity=0.245 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
++.+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|++++
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555543
No 24
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.1e-13 Score=115.91 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++ +|+++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 72 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFV----- 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcH-----
Confidence 47789999999999999999999999999999999999999999999999999999999999765 45543
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
.+++.+|.++..+|++++|++.|++ +..++
T Consensus 73 --~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~ 102 (126)
T 3upv_A 73 --RAYIRKATAQIAVKEYASALETLDA-ARTKD 102 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred --HHHHHHHHHHHHHhCHHHHHHHHHH-HHHhC
Confidence 4688899999999999999999999 66677
No 25
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.42 E-value=7.1e-13 Score=116.25 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.++.+|..+.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++|+++ +|+++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~-------~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-------A 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------H
Confidence 47899999999999999999999999999999999999999999999999999999999765 46544 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+++.+|.++...|++++|++.|++ +...+|+++
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~-al~~~P~~~ 119 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRA-WLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCCC
Confidence 678899999999999999999999 666888765
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=2.6e-12 Score=135.28 Aligned_cols=188 Identities=16% Similarity=0.102 Sum_probs=138.4
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
...+...+.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|+++++. +
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 90 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----K 90 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence 34555566678999999999999999999999999999999999999999999999999999999999999765 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc---hhhhhhhhH-----HHHHHHHH---------
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP---KSKAHYYDG-----LVVLARYV--------- 501 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~---~~~~~~~~~-----~~~La~~l--------- 501 (565)
|++. .++..+|.++..+|++++|++.|++ +...+|+++ .....+... ...+|..+
T Consensus 91 p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 91 MDFT-------AARLQRGHLLLKQGKLDEAEDDFKK-VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5433 4678899999999999999999999 666888776 432211111 12223333
Q ss_pred HHHHHHHHhcCCCcHHHH-------HhhhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435 502 ANITFLIFATSPSIINLL-------TVSNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 502 ~~~l~~Al~l~P~~~~~l-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+++++++++.+|+...++ ...++.+++.+.+.++. .+...++|.++|.+|...++..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 789999999999876544 23333334433333322 23468899999999988775443
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.6e-12 Score=120.48 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=117.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
.+...|.+++.++.+|..+...|++++|+..+++++..+|+++.++..+|.++...+++++|.+.++++++. +|.
T Consensus 31 al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~ 105 (184)
T 3vtx_A 31 VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTV 105 (184)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc
Confidence 344455678999999999999999999999999999999999999999999999999999999999999765 354
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT 511 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l 511 (565)
+. .++..+|.++..+|++++|++.|++ +...+|+++.... .+|.++ ++++++++++
T Consensus 106 ~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~-------~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 106 YA-------DAYYKLGLVYDSMGEHDKAIEAYEK-TISIKPGFIRAYQ-------SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp CH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ch-------HHHHHHHHHHHHhCCchhHHHHHHH-HHHhcchhhhHHH-------HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 43 4577899999999999999999999 6678999876533 444444 8999999999
Q ss_pred CCCcHH
Q 008435 512 SPSIIN 517 (565)
Q Consensus 512 ~P~~~~ 517 (565)
+|+...
T Consensus 171 ~p~~a~ 176 (184)
T 3vtx_A 171 EEKKAK 176 (184)
T ss_dssp THHHHH
T ss_pred CccCHH
Confidence 997654
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=6.6e-13 Score=127.27 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.+..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 91 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-----DSSAA----- 91 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcch-----
Confidence 34444555555555555555555555555555555555555555555555555555555555432 12211
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.++..+|.++...|++++|++.+++ +...+|+++
T Consensus 92 --~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~ 125 (243)
T 2q7f_A 92 --TAYYGAGNVYVVKEMYKEAKDMFEK-ALRAGMENG 125 (243)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHTCCSH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCCH
Confidence 2334445555555555555555555 333444443
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.42 E-value=2.7e-12 Score=131.20 Aligned_cols=183 Identities=13% Similarity=0.057 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..+.++..++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+..
T Consensus 93 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 167 (368)
T 1fch_A 93 QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAH 167 (368)
T ss_dssp SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGG
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHH
Confidence 345578889999999999999999999999999999999999999999999999999999999999764 333221
Q ss_pred hhh------------------------------------------H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 444 AID------------------------------------------L--LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 444 ~~~------------------------------------------~--~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
... . ...++..+|.++...|++++|++.|++ +...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~ 246 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-ALSV 246 (368)
T ss_dssp GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHh
Confidence 110 0 124677899999999999999999999 6667
Q ss_pred CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHH---hhhhhhhhhh-
Q 008435 480 EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIY---VNCYELKKKR- 539 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~---~~~~~~~~~~- 539 (565)
+|+++.... .+|..+ +++++++++++|+...++... ++.+++. +.+.+..+..
T Consensus 247 ~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 247 RPNDYLLWN-------KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp CTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred CcCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 888775432 444444 789999999999876544322 2222332 3333333321
Q ss_pred ---------hhhhhccchhHHHHHHHHHh
Q 008435 540 ---------FASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 540 ---------~~~~~~~~~~~~~~~~~~~~ 559 (565)
..++|.++|.+|..+|+..+
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHh
Confidence 27899999999999886443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.5e-12 Score=125.47 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=133.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.++.+..+|..+...|++++|+.+++++++.+ +++.+++.+|.++...|++++|+++|+++++.. |++..+...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-----REMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----cccccchHH
Confidence 36789999999999999999999999999999 999999999999999999999999999998763 221111112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----------------------CchhhhhhhhHHHHHHHHH---
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE-----------------------EPKSKAHYYDGLVVLARYV--- 501 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~-----------------------~~~~~~~~~~~~~~La~~l--- 501 (565)
...++..+|.++...|++++|++.|++ +...+|. +|. ....+..+|..+
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKKAEAEAYVNPE----KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc----hHHHHHHHHHHHHHh
Confidence 245788899999999999999999999 5554442 221 112333455444
Q ss_pred ------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHHHh
Q 008435 502 ------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 502 ------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
.++++++++.+|+...++... ++.+++...+... ..+...++|.++|.+|...++..+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 789999999999876544222 2333333332222 224578899999999988776443
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.40 E-value=4.7e-12 Score=129.38 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++. +|++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~------ 132 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------ 132 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-----CCCCH------
Confidence 4457899999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++..+|.++...|++++|++.+++ +...+|++...
T Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~ 168 (368)
T 1fch_A 133 -TALMALAVSFTNESLQRQACEILRD-WLRYTPAYAHL 168 (368)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTSTTTGGG
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCcHHH
Confidence 4677899999999999999999999 66677877654
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=6e-12 Score=121.85 Aligned_cols=171 Identities=13% Similarity=0.018 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++.++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRNA------ 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH------
Confidence 6778999999999999999999999999999999999999999999999999999999999765 34432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--cCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNL--KEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIIN 517 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~--l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~ 517 (565)
.++..+|.++...|++++|++++++ +.. .+|.++. .+..+|..+ .++++++++.+|+...
T Consensus 106 -~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 106 -RVLNNYGGFLYEQKRYEEAYQRLLE-ASQDTLYPERSR-------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-HTTCTTCTTHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHH-HHhCccCcccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 4577899999999999999999999 554 3333332 223444443 7899999999998765
Q ss_pred HHHhh-------hhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435 518 LLTVS-------NIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 518 ~l~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
++... ++.+++.+.+.+.. .....++|..++.+|...++..+
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 44322 23333333222221 13466788888888887765544
No 33
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.39 E-value=2.8e-12 Score=117.30 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
..+++.++.+|..+...|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+++|++++++ +|++.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--- 79 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYS--- 79 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---
Confidence 3457889999999999999999999999999999999999999999999999999999999999765 45543
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.+++++|.++..+|++++|+++|++ +..++|+++..
T Consensus 80 ----~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~ 115 (164)
T 3sz7_A 80 ----KAWSRLGLARFDMADYKGAKEAYEK-GIEAEGNGGSD 115 (164)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHSSSCCH
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCchHH
Confidence 4688899999999999999999999 67788998863
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.39 E-value=2.6e-12 Score=131.96 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=131.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF---------- 434 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~---------- 434 (565)
.+.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+++|++++++.-
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 174 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence 3456888999999999999999999999999999999999999999999999999999999999987520
Q ss_pred -----------------------------hcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 435 -----------------------------LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 435 -----------------------------l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+..+|... ...++..+|.++...|++++|++.|++ +...+|+++.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~ 248 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-----DPDLQTGLGVLFHLSGEFNRAIDAFNA-ALTVRPEDYS 248 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHH
Confidence 00011100 123577789999999999999999999 6667888765
Q ss_pred hhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHH---Hhhhhhhhhh--------
Q 008435 486 SKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDII---YVNCYELKKK-------- 538 (565)
Q Consensus 486 ~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~---~~~~~~~~~~-------- 538 (565)
... .+|..+ +++++++++.+|+...++... ++.+++ ++.+.+..+.
T Consensus 249 ~~~-------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 321 (365)
T 4eqf_A 249 LWN-------RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP 321 (365)
T ss_dssp HHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------
T ss_pred HHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccc
Confidence 433 444443 788999999999876544322 222222 2333333322
Q ss_pred ---hhhhhhccchhHHHHHHHH
Q 008435 539 ---RFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 539 ---~~~~~~~~~~~~~~~~~~~ 557 (565)
...++|.++|.+|..++..
T Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 322 HPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp -----CHHHHHHHHHHHHHTCH
T ss_pred hhhhHHHHHHHHHHHHHHcCcH
Confidence 1367888888888877643
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.39 E-value=3.2e-12 Score=129.05 Aligned_cols=179 Identities=18% Similarity=0.139 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++. +|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFT----- 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcc-----
Confidence 57789999999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC---CCchhhhhhh-----hHHHHHHHHH---------HHHHHHHHh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP---EEPKSKAHYY-----DGLVVLARYV---------ANITFLIFA 510 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P---~~~~~~~~~~-----~~~~~La~~l---------~~~l~~Al~ 510 (565)
.++..+|.++...|++++|++.|++ +...+| +++.....+. .....+|..+ ++.++++++
T Consensus 72 --~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 72 --AARLQRGHLLLKQGKLDEAEDDFKK-VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHcCChHHHHHHHHH-HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678899999999999999999999 666777 5554322110 0011113333 789999999
Q ss_pred cCCCcHHHHHhh-------hhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435 511 TSPSIINLLTVS-------NIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 511 l~P~~~~~l~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
.+|+...++... ++.+++.+.+.+.. .+...++|.++|.+|...++..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 999876654332 33333333332222 24578899999999998876544
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.39 E-value=1.6e-12 Score=114.86 Aligned_cols=110 Identities=10% Similarity=0.019 Sum_probs=92.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435 394 LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473 (565)
Q Consensus 394 ~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~le 473 (565)
++..+||+.++++..+|..+++.|++++|+++|++|+++ +|.++ .++.++|.++..+|++++|++.|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~ 71 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENA-------ILYSNRAACLTKLMEFQRALDDCD 71 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHhhHHHhhccHHHHHHHHH
Confidence 456799999999999999999999999999999999765 46544 468889999999999999999999
Q ss_pred HHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435 474 RIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSN 523 (565)
Q Consensus 474 raa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~ 523 (565)
+ +..++|+++.... .+|.++ +++|+++++++|++.+++....
T Consensus 72 ~-al~~~p~~~~a~~-------~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 72 T-CIRLDSKFIKGYI-------RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp H-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred H-HHHhhhhhhHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 9 6778999876533 444444 8999999999999998876654
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=8.1e-12 Score=121.97 Aligned_cols=178 Identities=15% Similarity=0.058 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~----- 111 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN----- 111 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----Ccccc-----
Confidence 47788999999999999999999999999999999999999999999999999999999999765 35443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh---
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS--- 522 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~--- 522 (565)
.++..+|.++...|++++|++.|++ +...+|+++....... .....+..- .+.+++++..+|+....+...
T Consensus 112 --~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 1xnf_A 112 --YAHLNRGIALYYGGRDKLAQDDLLA-FYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187 (275)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4678899999999999999999999 6668888874322111 111111111 778888888888643222111
Q ss_pred ---hhhhHHHhhhhh---hhh---hhhhhhhccchhHHHHHHHHHh
Q 008435 523 ---NIIDIIYVNCYE---LKK---KRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 523 ---~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
...++..+.+.. ..+ .+..++|.++|.+|...++..+
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 111122222222 111 2347889999999988776544
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=1e-11 Score=118.85 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=127.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+...+.+++.++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.+
T Consensus 50 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~ 124 (243)
T 2q7f_A 50 IEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMEN 124 (243)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCS
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCC
Confidence 33445568899999999999999999999999999999999999999999999999999999999999765 3443
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS 512 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~ 512 (565)
. .++..+|.++...|++++|++.+++ +...+|+++.... .+|..+ .++++++++.+
T Consensus 125 ~-------~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 125 G-------DLFYMLGTVLVKLEQPKLALPYLQR-AVELNENDTEARF-------QFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp H-------HHHHHHHHHHHHTSCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred H-------HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3 3577799999999999999999999 6667888775432 334333 78999999999
Q ss_pred CCcHHHHHhhh-------hhhHHH---hhhhhhhhhhhhhhhccchhHHHH
Q 008435 513 PSIINLLTVSN-------IIDIIY---VNCYELKKKRFASCFFGFSVLYVM 553 (565)
Q Consensus 513 P~~~~~l~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 553 (565)
|+....+.... +.+++. +.+.+.. +...+++.+++.+...
T Consensus 190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGHH 239 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHhh
Confidence 98766543322 222222 2222222 3366666666665543
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.37 E-value=5.3e-12 Score=126.29 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 365 ENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
.+.++..++.+|..+...| ++++|+.+++++++.+|+++.+|..+|.++...|++++|+++|+++++. +|.+.
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~- 159 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-----MKGCH- 159 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCS-
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----ccccH-
Confidence 3344556666666666666 6666666666666666666666666666666666666666666666543 23221
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
.++..+|.++...|++++|++.+++ +...+|+++.
T Consensus 160 ------~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~ 194 (330)
T 3hym_B 160 ------LPMLYIGLEYGLTNNSKLAERFFSQ-ALSIAPEDPF 194 (330)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHH
T ss_pred ------HHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCChH
Confidence 2344466666666666666666666 4445555543
No 40
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.36 E-value=1.3e-12 Score=120.63 Aligned_cols=115 Identities=11% Similarity=-0.000 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhh--
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NIN-----ALILMGQTQLQKGLLEEAVEYLECAISKL-- 433 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~-------~a~-----A~~~LG~~~~~~g~~~eA~~~~~rAl~l~-- 433 (565)
.++.+...|..+...|++++|+..|++||+++|+ +.. +|.++|.++...|++++|+++|++||++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3678899999999999999999999999999999 544 99999999999999999999999998761
Q ss_pred hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 434 ~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
....+|++. .....++++.|.++..+|+++||++.|++ +..++|+|...
T Consensus 90 ~~e~~pd~~---~A~~~~~~~rG~aL~~lgr~eEAl~~y~k-Alel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEG---KLWISAVYSRALALDGLGRGAEAMPEFKK-VVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCCSC
T ss_pred cccCCCchH---HHHHHHHHhHHHHHHHCCCHHHHHHHHHH-HHhcCCCcHHH
Confidence 112245432 11112339999999999999999999999 77789988754
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=5.3e-12 Score=123.51 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+.+++.++.+|..+...|++++|+..++++++ .|++ +.++..+|.++...|++++|+++|+++++. +|.+
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 107 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-----DTTR 107 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----Cccc
Confidence 33456788999999999999999999999999 4443 556999999999999999999999999765 3544
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH-HHH--------HHHHHHHHhcC
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA-RYV--------ANITFLIFATS 512 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La-~~l--------~~~l~~Al~l~ 512 (565)
. .++..+|.++...|++++|++.|++ +...+|.++.... .+| ..+ .+.++++++.+
T Consensus 108 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 108 L-------DMYGQIGSYFYNKGNFPLAIQYMEK-QIRPTTTDPKVFY-------ELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp T-------HHHHHHHHHHHHTTCHHHHHHHHGG-GCCSSCCCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred H-------HHHHHHHHHHHHccCHHHHHHHHHH-HhhcCCCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 3677899999999999999999999 6667888875422 444 333 78999999999
Q ss_pred CCcHHHHHhhh-------h------hhHHHhhhhhhh-------hhhhhhhhccchhHHHHHHHHHhh
Q 008435 513 PSIINLLTVSN-------I------IDIIYVNCYELK-------KKRFASCFFGFSVLYVMLVAMLKL 560 (565)
Q Consensus 513 P~~~~~l~~~~-------~------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 560 (565)
|+....+.... + .-..++.+.+.. +....++|..+|.+|...++..+-
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99765432221 1 112233333322 222568999999999988765543
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.36 E-value=6.8e-12 Score=108.45 Aligned_cols=109 Identities=10% Similarity=0.028 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.+.++..++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++. +|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-- 84 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFI-- 84 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCch--
Confidence 35568899999999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.+++.+|.++...|++++|+++|++ +...+|++...
T Consensus 85 -----~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~ 120 (133)
T 2lni_A 85 -----KGYTRKAAALEAMKDYTKAMDVYQK-ALDLDSSCKEA 120 (133)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCGGGTHH
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCchHH
Confidence 4678899999999999999999999 66677777644
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=8e-12 Score=117.77 Aligned_cols=173 Identities=12% Similarity=0.029 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 76 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSA----- 76 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh-----
Confidence 46778889999999999999999999999999999999999999999999999999999999764 34432
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHH
Q 008435 448 LIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIIN 517 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~ 517 (565)
.++..+|.++... |++++|++.+++ +.. .|.++... ..+..+|..+ .++++++++.+|+...
T Consensus 77 --~~~~~l~~~~~~~~~~~~~A~~~~~~-~~~-~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 148 (225)
T 2vq2_A 77 --EINNNYGWFLCGRLNRPAESMAYFDK-ALA-DPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148 (225)
T ss_dssp --HHHHHHHHHHHTTTCCHHHHHHHHHH-HHT-STTCSCHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHH-HHc-CcCCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch
Confidence 3567789999999 999999999999 444 44444221 1223444444 7888999999998655
Q ss_pred HHHhh-------hhhhHHH---hhhhhhhhhhhhhhhccchhHHHHHHHHH
Q 008435 518 LLTVS-------NIIDIIY---VNCYELKKKRFASCFFGFSVLYVMLVAML 558 (565)
Q Consensus 518 ~l~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (565)
++... ++.+++. +...+..+....++|..++.+|...++..
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 43222 2222222 22222222146667766666666655443
No 44
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=7.5e-13 Score=149.90 Aligned_cols=139 Identities=12% Similarity=-0.050 Sum_probs=119.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
...+.+++.++.+|..+.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++|+++ +|+++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~ 501 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGEL 501 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCS
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh
Confidence 4456678899999999999999999999999999999999999999999999999999999999999765 46654
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSP 513 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P 513 (565)
.+++++|.++..+|++++ +++|++ +..++|+++.... ++|..+ +++|+++++++|
T Consensus 502 -------~~~~~lg~~~~~~g~~~~-~~~~~~-al~~~P~~~~a~~-------~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 502 -------APKLALAATAELAGNTDE-HKFYQT-VWSTNDGVISAAF-------GLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp -------HHHHHHHHHHHHHTCCCT-TCHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred -------HHHHHHHHHHHHcCChHH-HHHHHH-HHHhCCchHHHHH-------HHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 467889999999999999 999999 6778999886533 444444 789999999999
Q ss_pred CcHHHHHhh
Q 008435 514 SIINLLTVS 522 (565)
Q Consensus 514 ~~~~~l~~~ 522 (565)
++..++...
T Consensus 566 ~~~~a~~~~ 574 (681)
T 2pzi_A 566 HFTTARLTS 574 (681)
T ss_dssp THHHHHHHH
T ss_pred ccHHHHHHH
Confidence 988766443
No 45
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.35 E-value=7.4e-12 Score=125.22 Aligned_cols=180 Identities=10% Similarity=0.034 Sum_probs=131.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+.++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +
T Consensus 115 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~ 189 (330)
T 3hym_B 115 SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----A 189 (330)
T ss_dssp HHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C
T ss_pred HHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----C
Confidence 44455556678889999999999999999999999999999999999999999999999999999999999643 4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh--hhhhhhHHHHHHHHH---------HHHHHH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS--KAHYYDGLVVLARYV---------ANITFL 507 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~--~~~~~~~~~~La~~l---------~~~l~~ 507 (565)
|.++ .++..+|.++...|++++|++.+++ +....|..... .......+..+|..+ .+++++
T Consensus 190 ~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 190 PEDP-------FVMHEVGVVAFQNGEWKTAEKWFLD-ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCh-------HHHHHHHHHHHHcccHHHHHHHHHH-HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5543 4677899999999999999999999 44343211100 001112333555554 789999
Q ss_pred HHhcCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHH
Q 008435 508 IFATSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLY 551 (565)
Q Consensus 508 Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 551 (565)
+++.+|+...++... ++.+++.+.+..+ ..+...+++..+|.+|
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 999999866544333 2222333222222 2244778888888877
No 46
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=3e-12 Score=145.01 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLAL--------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL--------~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.++...+..| ...|++++|++.+++++ +.+|+++++++.+|.++...|++++|++.|+++++..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----- 463 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----- 463 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----
Confidence 3455555555 78899999999999999 9999999999999999999999999999999998753
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--------HHHHHHHHh
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--------ANITFLIFA 510 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--------~~~l~~Al~ 510 (565)
|+++ .+++++|.++..+|++++|++.|++ +..++|+++.... ++|.++ +++|+++++
T Consensus 464 p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~P~~~~~~~-------~lg~~~~~~g~~~~~~~~~~al~ 528 (681)
T 2pzi_A 464 GWRW-------RLVWYRAVAELLTGDYDSATKHFTE-VLDTFPGELAPKL-------ALAATAELAGNTDEHKFYQTVWS 528 (681)
T ss_dssp CCCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCSHHHH-------HHHHHHHHHTCCCTTCHHHHHHH
T ss_pred cchH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHH-------HHHHHHHHcCChHHHHHHHHHHH
Confidence 6544 4788899999999999999999999 7779999986533 445444 568999999
Q ss_pred cCCCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435 511 TSPSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 511 l~P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 555 (565)
++|++..++... ++.+++.+.+.++ ....+.++|+++|.+|...+
T Consensus 529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 999987655333 3333443333332 23569999999999986533
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.34 E-value=2.7e-12 Score=117.69 Aligned_cols=114 Identities=11% Similarity=-0.045 Sum_probs=93.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHH
Q 008435 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (565)
Q Consensus 390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi 469 (565)
..++++++++|+++++++.+|.++.+.|++++|+++|++++++ +|+++ .+|+++|.++..+|++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~-------~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV-------DYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHHccHHHHH
Confidence 3467789999999999999999999999999999999999765 56655 46888999999999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH
Q 008435 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII 516 (565)
Q Consensus 470 ~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~ 516 (565)
+.|++ +..++|+++........++..++..- +++|+++++++|+..
T Consensus 91 ~~~~~-al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAV-AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHH-HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHH-HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999 77799999976442222222222222 899999999999865
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.34 E-value=6.1e-12 Score=126.55 Aligned_cols=105 Identities=16% Similarity=0.110 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.+++.++.+|..+...|++++|+..|++|++.+|+++.+++.+|.++...|++++|++.|++|++ .+|++.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~---- 72 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSV---- 72 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SCTTCH----
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCCH----
Confidence 46889999999999999999999999999999999999999999999999999999999999954 456554
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.+++.+|.++..+|++++|++.|++ +..++|+++
T Consensus 73 ---~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~ 106 (281)
T 2c2l_A 73 ---KAHFFLGQCQLEMESYDEAIANLQR-AYSLAKEQR 106 (281)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTT
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccch
Confidence 4688899999999999999999999 666777765
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=2.6e-12 Score=139.13 Aligned_cols=163 Identities=12% Similarity=0.026 Sum_probs=128.7
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECA 429 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~---------g~~~eA~~~~~rA 429 (565)
.+.+...+.+++.++.+|..+...|++++|+.+|++|++++|+ ..++..+|.++... |++++|+++|++|
T Consensus 127 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 127 SKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 3444455667999999999999999999999999999999999 79999999999999 9999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhccCC---CCchhhhhhhhHHHHHH
Q 008435 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEP---EEPKSKAHYYDGLVVLA 498 (565)
Q Consensus 430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~--------g~~~eAi~~leraa~~l~P---~~~~~~~~~~~~~~~La 498 (565)
+++ +|+++ .+++++|.++..+ |++++|+++|++ +..++| +++.... .+|
T Consensus 206 l~~-----~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~-------~lg 265 (474)
T 4abn_A 206 VQM-----DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ-AEKVDRKASSNPDLHL-------NRA 265 (474)
T ss_dssp HHH-----CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHCGGGGGCHHHHH-------HHH
T ss_pred HHh-----CCCCH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHH-HHHhCCCcccCHHHHH-------HHH
Confidence 765 46544 4688899999999 999999999999 666788 6665432 455
Q ss_pred HHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHHhhhhhhhhhhhhh
Q 008435 499 RYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIYVNCYELKKKRFAS 542 (565)
Q Consensus 499 ~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~ 542 (565)
..+ .++++++++++|++..++... ++.+++++.+....++|..+
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~~~l~~ 325 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQS 325 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHH
Confidence 444 899999999999988655444 33334444444444454443
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.34 E-value=2.6e-11 Score=121.08 Aligned_cols=183 Identities=12% Similarity=0.056 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++.. |.+....
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~ 126 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQYEQLG 126 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTTTC-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHH
Confidence 33677888999999999999999999999999999999999999999999999999999999997642 2111000
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 446 ------------------------------------------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 446 ------------------------------------------~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
+....++..+|.++...|++++|++.+++ +...+|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~ 205 (327)
T 3cv0_A 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-AVELRPDD 205 (327)
T ss_dssp -------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCc
Confidence 00123567799999999999999999999 66678887
Q ss_pred chhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhh-------hhhhHHH---hhhhhhhhhh-----
Q 008435 484 PKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVS-------NIIDIIY---VNCYELKKKR----- 539 (565)
Q Consensus 484 ~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~---~~~~~~~~~~----- 539 (565)
+.... .+|..+ .++++++++.+|+....+... ++.+++. +.+.+..+..
T Consensus 206 ~~~~~-------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 206 AQLWN-------KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 75432 344333 789999999999876544322 2222232 2333332221
Q ss_pred ------hhhhhccchhHHHHHHHHHhhh
Q 008435 540 ------FASCFFGFSVLYVMLVAMLKLR 561 (565)
Q Consensus 540 ------~~~~~~~~~~~~~~~~~~~~~~ 561 (565)
..++|.++|.+|..+++.-+-.
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 6889999999999988665543
No 51
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=2.6e-11 Score=109.17 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.++.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI----- 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-----
Confidence 36778999999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~ 487 (565)
.+++.+|.++...|++++|+++|++ +...+|+++...
T Consensus 82 --~~~~~~a~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~ 118 (166)
T 1a17_A 82 --KGYYRRAASNMALGKFRAALRDYET-VVKVKPHDKDAK 118 (166)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCCCHHHH
Confidence 4678899999999999999999999 666888887543
No 52
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=1.5e-11 Score=107.79 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.+.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|+++
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~-- 77 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV-- 77 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhH--
Confidence 45578999999999999999999999999999999999999999999999999999999999999765 35443
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
.+++.+|.++...|++++|++.|++ +...+|+
T Consensus 78 -----~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~p~ 109 (137)
T 3q49_B 78 -----KAHFFLGQCQLEMESYDEAIANLQR-AYSLAKE 109 (137)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHH-HHHHChh
Confidence 4688899999999999999999999 5556666
No 53
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.30 E-value=4.3e-12 Score=115.23 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=93.5
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHH
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE 466 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~ 466 (565)
.+-..|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.++ .+++++|.++..+|+++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS-------RFFLGLGACRQAMGQYD 72 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH-------HHHHHHHHHHHHHhhHH
Confidence 3345789999999999999999999999999999999999999765 46544 46788999999999999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435 467 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL 518 (565)
Q Consensus 467 eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~ 518 (565)
+|++.|++ +..++|+++........++..++..- +++|+++++++|+..+.
T Consensus 73 ~A~~~~~~-al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 73 LAIHSYSY-GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHH-HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHH-HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999 67789999865332222222222222 78999999998875443
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.30 E-value=5.8e-11 Score=127.64 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|+++++. +|++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI-----KPDHS----- 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCchH-----
Confidence 36778999999999999999999999999999999999999999999999999999999999765 45543
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLE 473 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~le 473 (565)
.++..+|.++...|++++|++.|+
T Consensus 94 --~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 94 --KALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457778888888888888888774
No 55
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.30 E-value=2.1e-11 Score=121.72 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI----- 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCH-----
Confidence 34568999999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++..+|.++...|++++|++.+++ +...+|.+...
T Consensus 90 --~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~ 125 (327)
T 3cv0_A 90 --AVHAALAVSHTNEHNANAALASLRA-WLLSQPQYEQL 125 (327)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTSTTTTTC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCccHHH
Confidence 4577899999999999999999999 55677776643
No 56
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=6.7e-12 Score=126.54 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.+++.++.+|..+.+.|++++|+..|+++++.+|+++++++.+|.++.+.|++++|++.|+++++. +|+ .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~-~---- 184 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQD-T---- 184 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCS-H----
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcc-h----
Confidence 357889999999999999999999999999999999999999999999999999999999999543 342 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc--HHHHHhh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI--INLLTVS 522 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~--~~~l~~~ 522 (565)
...+...+..+...++.++|++.|++ +...+|+++.....+...+...+..- ++.|+++++.+|++ ..++...
T Consensus 185 --~~~~~~~~~~l~~~~~~~~a~~~l~~-al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 185 --RYQGLVAQIELLXQAADTPEIQQLQQ-QVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp --HHHHHHHHHHHHHHHTSCHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred --HHHHHHHHHHHHhhcccCccHHHHHH-HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 12345577778899999999999999 67789999865432222222222211 88999999999988 4444443
No 57
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=1.9e-11 Score=134.66 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=116.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
.+...+.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|+
T Consensus 15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~ 89 (568)
T 2vsy_A 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APE 89 (568)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCC
Confidence 344456678999999999999999999999999999999999999999999999999999999999999765 455
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HHHH--HHHHHHHHhcCCCc
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---ARYV--ANITFLIFATSPSI 515 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~~l--~~~l~~Al~l~P~~ 515 (565)
++ .+++++|.++..+|++++|+++|++ +...+|+++.....+...+..+ +... .+.++++++.+|+.
T Consensus 90 ~~-------~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 90 HP-------GIALWLGHALEDAGQAEAAAAAYTR-AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp CH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred CH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 43 4678899999999999999999999 6678999886544333333333 3222 78899999999985
Q ss_pred HH
Q 008435 516 IN 517 (565)
Q Consensus 516 ~~ 517 (565)
..
T Consensus 162 ~~ 163 (568)
T 2vsy_A 162 VE 163 (568)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.29 E-value=1.5e-10 Score=116.69 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.+++.+..+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|++.|+++++. +|++....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~ 225 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCF 225 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999765 45544211
Q ss_pred hHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435 446 DLL-----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT 511 (565)
Q Consensus 446 ~~~-----~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l 511 (565)
... ......+|.++...|++++|++.+++ +...+|+++.. ....+..+|..+ .++++++++.
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTEPSVAEY---TVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCSSHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCchHH---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 111 01234568899999999999999999 66678887643 223344555555 8999999999
Q ss_pred CCCcHHHHHhh-------hhhhHHHhhh---hhhhhhhhhhhhccchhHHHHHHHHH
Q 008435 512 SPSIINLLTVS-------NIIDIIYVNC---YELKKKRFASCFFGFSVLYVMLVAML 558 (565)
Q Consensus 512 ~P~~~~~l~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (565)
+|+...++... ++.+++.+.+ .+.. +...+++.+++.++..+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHhc
Confidence 99876654332 2333333322 3232 447778888888888877554
No 59
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.29 E-value=5.8e-11 Score=99.89 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
.++.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++++++++. +|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG----- 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccH-----
Confidence 36778999999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++..+|.++...|++++|++.+++ +...+|+++..
T Consensus 73 --~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~ 108 (118)
T 1elw_A 73 --KGYSRKAAALEFLNRFEEAKRTYEE-GLKHEANNPQL 108 (118)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHHH
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHH-HHHcCCCCHHH
Confidence 4677899999999999999999999 66788888754
No 60
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=3.5e-11 Score=127.76 Aligned_cols=183 Identities=13% Similarity=0.011 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK---------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~---------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
+..+..+|..+...|++++|+.+|++|+++ +|+.+.+|.++|.+|...|++++|+.+|++++++..-..++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445667999999999999999999999986 78899999999999999999999999999998764111222
Q ss_pred CChhhhhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----HHHHHHHHhcC
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQ--EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----ANITFLIFATS 512 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~--g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----~~~l~~Al~l~ 512 (565)
...+. ..++...|.++... +++++|++.|++ +..++|+++.....+......++..- ++.++++++++
T Consensus 131 ~~~~~----~~~~~~~g~~~~~~~~~~y~~A~~~~~k-al~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 YRIES----PELDCEEGWTRLKCGGNQNERAKVCFEK-ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCCC----HHHHHHHHHHHHHHCTTHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cchhh----HHHHHHHHHHHHHHccccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 21111 13466677777654 579999999999 77789999865433322222222211 78899999999
Q ss_pred CCcHHHHHhhh--------------hhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHH
Q 008435 513 PSIINLLTVSN--------------IIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 513 P~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
|+...++.... +....++...+. .+...+++.++|.+|...++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCch
Confidence 98765443221 111222222222 233566677777776665543
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=3.5e-11 Score=127.73 Aligned_cols=177 Identities=13% Similarity=0.021 Sum_probs=127.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHH
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-------------------GLLEEAVEY 425 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-------------------g~~~eA~~~ 425 (565)
.+.++..+..+|..+...|++++|+..+++|++.+|+++.+++.+|.+|... +.+++|+++
T Consensus 243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456777888888888888888888888888888888888888888887543 235677777
Q ss_pred HHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH----
Q 008435 426 LECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---- 501 (565)
Q Consensus 426 ~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---- 501 (565)
|+++++. +|.+. .++..+|.++...|++++|++.|++ +...+|.+..... ....+|...
T Consensus 323 ~~~a~~~-----~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~k-aL~~~~~~~~~~~----~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 323 LKKADEA-----NDNLF-------RVCSILASLHALADQYEEAEYYFQK-EFSKELTPVAKQL----LHLRYGNFQLYQM 385 (472)
T ss_dssp HHHHHHH-----CTTTC-------CCHHHHHHHHHHTTCHHHHHHHHHH-HHHSCCCHHHHHH----HHHHHHHHHHHTS
T ss_pred HHHHhhc-----CCchh-------hhhhhHHHHHHHhccHHHHHHHHHH-HHhcCCCChHHHH----HHHHHHHHHHHHC
Confidence 7777554 34432 2466799999999999999999999 5556665543211 112333222
Q ss_pred ------HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHh
Q 008435 502 ------ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 502 ------~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+++|+++++++|+.....+..+....+++...+.. ++.+++|.+||.+|...|+..+
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 78999999999998776665555545544444433 4589999999999999987543
No 62
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.3e-11 Score=105.53 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=99.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008435 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
.....+.+++.++.+|..+...|++++|+.+|+++++.+|++ ..+++.+|.++...|++++|+++|+++++.
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 94 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----- 94 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 344445679999999999999999999999999999999998 999999999999999999999999999765
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
+|+++ .+++.+|.++...|++++|+++|++ +...+|+++..
T Consensus 95 ~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~ 135 (148)
T 2dba_A 95 DGGDV-------KALYRRSQALEKLGRLDQAVLDLQR-CVSLEPKNKVF 135 (148)
T ss_dssp TSCCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCSSCHHH
T ss_pred CccCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCcHHH
Confidence 35433 4678899999999999999999999 66688888754
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=6.6e-11 Score=107.51 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 110 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINF----- 110 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhH-----
Confidence 35556666666666666666666666666666666666666666666666666666666666543 23222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.++..+|.++...|++++|++.+++ +...+|.++
T Consensus 111 --~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~ 144 (186)
T 3as5_A 111 --NVRFRLGVALDNLGRFDEAIDSFKI-ALGLRPNEG 144 (186)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCH
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHH-HHhcCccch
Confidence 2345566666666666666666666 444555554
No 64
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.26 E-value=6e-11 Score=101.51 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. +|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---- 80 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYS---- 80 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCH----
Confidence 356788999999999999999999999999999999999999999999999999999999999764 35433
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.+++.+|.++...|++++|++.+++ +...+|+++..
T Consensus 81 ---~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~ 116 (131)
T 2vyi_A 81 ---KAYGRMGLALSSLNKHVEAVAYYKK-ALELDPDNETY 116 (131)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHH
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCccchHH
Confidence 4678899999999999999999999 66688887754
No 65
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.26 E-value=2.4e-11 Score=110.82 Aligned_cols=104 Identities=22% Similarity=0.152 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK------------------EPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------------------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
.++.+..+|..++..|++++|+..|++|++. +|.++.+|+.+|.++...|++++|+.++++|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3677899999999999999999999999999 8888899999999999999999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+++ +|+++ .+++.+|.++..+|++++|+..|++ +..++|+++
T Consensus 90 l~~-----~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~-al~l~p~~~ 131 (162)
T 3rkv_A 90 LKR-----EETNE-------KALFRRAKARIAAWKLDEAEEDLKL-LLRNHPAAA 131 (162)
T ss_dssp HHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCGGGH
T ss_pred Hhc-----CCcch-------HHHHHHHHHHHHHhcHHHHHHHHHH-HHhcCCCCH
Confidence 765 46544 5788999999999999999999999 666888876
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.26 E-value=1.2e-11 Score=133.17 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+..++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++. +|++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 344 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----NPENV------ 344 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCS------
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH------
Confidence 5667777888888888888888888888888888888888888888888888888888888654 34433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH----------
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII---------- 516 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~---------- 516 (565)
.++..+|.++...|++++|++.+++ +...+|+++.....+...+...+..- .++++++++.+|+..
T Consensus 345 -~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 345 -YPYIQLACLLYKQGKFTESEAFFNE-TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 3466678888888888888888888 55567777654332211111111111 677777777766432
Q ss_pred ---HHHHhh----------hhhhHHHh---hhhhhhhhhhhhhhccchhHHHHHHHHH
Q 008435 517 ---NLLTVS----------NIIDIIYV---NCYELKKKRFASCFFGFSVLYVMLVAML 558 (565)
Q Consensus 517 ---~~l~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (565)
.++... ++.+++.. .+.+.. +...++|.++|.+|...|+..
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 122222 33333332 222222 346677888888887766543
No 67
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.25 E-value=2e-10 Score=120.79 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.++..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++. +|++.....
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 249 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFA 249 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHH
Confidence 367889999999999999999999999999999999999999999999999999999999999764 455432111
Q ss_pred HH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435 447 LL-----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS 512 (565)
Q Consensus 447 ~~-----~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~ 512 (565)
.. ......+|.++...|++++|++.|++ +...+|+++... ...+..+|..+ +++++++++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTEPSIAEYT---VRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCSSHHHH---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCcchHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 00 01123459999999999999999999 666888876421 22344555555 78999999999
Q ss_pred CCcHHHHHhh-------hhhhHHHhhhhhh--hhhhhhhhhccchhHHHHHHHH
Q 008435 513 PSIINLLTVS-------NIIDIIYVNCYEL--KKKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 513 P~~~~~l~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 557 (565)
|+...++... ++.+++.+.+..+ ..+...++|.++|.++..+...
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 9876654332 2333333322222 2234677888888777666543
No 68
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=9.2e-11 Score=113.25 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
++++.++.+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|++.|+++++. +|+++.
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~ 76 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 76 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCc
Confidence 468899999999999999999999999999999987 479999999999999999999999999765 465442
Q ss_pred hhhHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHhhccCCCCchh
Q 008435 444 AIDLLIVASQWSGVACIR------------------QEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~------------------~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
...+++.+|.++.. .|++++|+..|++ +....|+++..
T Consensus 77 ----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~P~~~~a 132 (225)
T 2yhc_A 77 ----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK-LVRGYPNSQYT 132 (225)
T ss_dssp ----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH-HHTTCTTCTTH
T ss_pred ----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH-HHHHCcCChhH
Confidence 12467888888876 6799999999999 66788988754
No 69
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.25 E-value=2.3e-11 Score=101.63 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC--Chhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EPEA 444 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~--~~~~ 444 (565)
.+++.++.+|..+...|++++|+.+++++++.+|++..+++.+|.++...|++++|+++|+++++. +|. +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~-- 76 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNK-- 76 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCH--
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchH--
Confidence 346678899999999999999999999999999999999999999999999999999999999764 454 33
Q ss_pred hhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCCCCc
Q 008435 445 IDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l~P~~~ 484 (565)
.++..+|.++... |++++|++++++ +...+|.++
T Consensus 77 -----~~~~~l~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~ 111 (112)
T 2kck_A 77 -----DVWAAKADALRYIEGKEVEAEIAEAR-AKLEHHHHH 111 (112)
T ss_dssp -----HHHHHHHHHHTTCSSCSHHHHHHHHH-HGGGCCCCC
T ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHHHH-HhhcccCCC
Confidence 4678899999999 999999999999 666777654
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=2.5e-10 Score=110.31 Aligned_cols=135 Identities=16% Similarity=0.074 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++ .+.++ .
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~----~ 139 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYP----E 139 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCT----T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCc----c
Confidence 4678899999999999999999999999999999999999999999999999999999999953 11112 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL 518 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~ 518 (565)
...++..+|.++...|++++|++++++ +...+|.++.... .++..+ .++++++++.+|+....
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEK-SLRLNRNQPSVAL-------EMADLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcccHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 124677899999999999999999999 6667888765432 344333 78999999999987765
Q ss_pred HH
Q 008435 519 LT 520 (565)
Q Consensus 519 l~ 520 (565)
+.
T Consensus 212 ~~ 213 (252)
T 2ho1_A 212 LL 213 (252)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=7.5e-11 Score=100.97 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
+.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------- 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA------- 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCch-------
Confidence 457788999999999999999999999999999999999999999999999999999999764 34332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS 514 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~ 514 (565)
.++..+|.++...|++++|++.+++ +...+|.++.... .++..+ .++++++++.+|+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPRSAEAWY-------NLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCChHHHH-------HHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 3567799999999999999999999 5557777764322 344433 6777888877775
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=6.1e-11 Score=119.44 Aligned_cols=142 Identities=11% Similarity=-0.020 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+..+..+|..+...|++++|+.+|++|++++|+. +.++..+|.+|... |++++|+++|++|+++. |.+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~-----~~~ 151 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY-----AQD 151 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----HHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-----HhC
Confidence 5678899999999999999999999999998865 67999999999996 99999999999998764 211
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcC
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATS 512 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~ 512 (565)
. .......++.++|.++..+|++++|+++|++ +...+|+++.........+..+|.++ +++++++++++
T Consensus 152 ~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 152 Q-SVALSNKCFIKCADLKALDGQYIEASDIYSK-LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred C-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 1112234678899999999999999999999 66677777643211112333445444 78999999999
Q ss_pred CCcHH
Q 008435 513 PSIIN 517 (565)
Q Consensus 513 P~~~~ 517 (565)
|++..
T Consensus 230 p~~~~ 234 (292)
T 1qqe_A 230 PNFAD 234 (292)
T ss_dssp -----
T ss_pred CCCCC
Confidence 98765
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=8.5e-11 Score=106.77 Aligned_cols=131 Identities=11% Similarity=0.188 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++. +|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNV------ 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH------
Confidence 5667889999999999999999999999999999999999999999999999999999999764 34432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l 519 (565)
.++..+|.++...|++++|++++++ +...+|.++.... .+|..+ .++++++++.+|+....+
T Consensus 77 -~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 147 (186)
T 3as5_A 77 -KVATVLGLTYVQVQKYDLAVPLLIK-VAEANPINFNVRF-------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH 147 (186)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCcHhHHHHH-------HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHH
Confidence 4577899999999999999999999 6667888765432 333333 788899999988876544
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=1.6e-10 Score=113.44 Aligned_cols=148 Identities=14% Similarity=0.046 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhhhhcC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQ--------KGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---a~A~~~LG~~~~~--------~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
++.++.+|..+...|++++|+..|+++++.+|++ ..+++.+|.++.. .|++++|++.|+++++.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----- 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----- 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----
Confidence 7889999999999999999999999999998854 7899999999999 99999999999999765
Q ss_pred CCCChhhhhH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh-hhhhhh--HHHHH-------
Q 008435 438 HPTEPEAIDL----------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYD--GLVVL------- 497 (565)
Q Consensus 438 ~P~~~~~~~~----------~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~-~~~~~~--~~~~L------- 497 (565)
+|++...... ....++.+|.+|...|++++|+..|++ +...+|+++.. ..++.. ++..+
T Consensus 127 ~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 127 YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA-VFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 4654321111 011237899999999999999999999 66678886532 122222 22222
Q ss_pred ---HHHH--HHHHHHHHhcCCCcHHHHHhh
Q 008435 498 ---ARYV--ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 498 ---a~~l--~~~l~~Al~l~P~~~~~l~~~ 522 (565)
+..- ++.++++++.+|+...+....
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 2222 788999999999986554443
No 75
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.24 E-value=3.1e-11 Score=104.62 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
+.++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+++|+++++. +|++..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~--- 74 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK--- 74 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc---
Confidence 3578999999999999999999999999999998 89999999999999999999999999765 354421
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
...+++++|.++..+|++++|++.|++ +....|+++..
T Consensus 75 -~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~ 112 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQ-VATQYPGSDAA 112 (129)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTSHHH
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCChHH
Confidence 124688899999999999999999999 66678887643
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=1.1e-10 Score=120.67 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
+.++..+..+|..+...|++++|+.+|++|++++|++ +.+|+.+|.++...|++++|+++|++|+
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999 7999999999999999999999999997
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
++ +|+++ .+++++|.++..+|++++|++.|++ +..++|+++....
T Consensus 224 ~~-----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~P~~~~a~~ 268 (336)
T 1p5q_A 224 EL-----DSNNE-------KGLSRRGEAHLAVNDFELARADFQK-VLQLYPNNKAAKT 268 (336)
T ss_dssp HH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSSCHHHHH
T ss_pred Hh-----CCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCCHHHHH
Confidence 65 46543 4788999999999999999999999 7778999886543
No 77
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.23 E-value=7.4e-11 Score=108.69 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=64.9
Q ss_pred HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH-
Q 008435 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA- 458 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a- 458 (565)
...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+++|+++++.. |+++ .++..+|.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~-------~~~~~la~~l 88 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENA-------ELYAALATVL 88 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCH-------HHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH-------HHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666665442 3322 244556666
Q ss_pred HHHcCCH--HHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435 459 CIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI 515 (565)
Q Consensus 459 ~~~~g~~--~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~ 515 (565)
+...|++ ++|++.+++ +...+|+++.... .+|..+ .++++++++.+|+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDK-ALALDSNEITALM-------LLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHTTTCCCHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHhcCCcchHHHHHHHHH-HHHhCCCcHHHHH-------HHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 5566666 666666666 4445665553322 223222 55666666666653
No 78
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.23 E-value=1.1e-10 Score=127.67 Aligned_cols=179 Identities=8% Similarity=-0.043 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.++..+..+|..+...|++++|+..|+++++.+|++..+|..+|.++.+.|++++|++.|+++++. +|++.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--- 441 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-----FQGTH--- 441 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TTTCS---
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch---
Confidence 3457778888888888888888888888888888888888888888888888888888888888653 34332
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhc------CCCc-H
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFAT------SPSI-I 516 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l------~P~~-~ 516 (565)
.++..+|.+|.+.|++++|++.|++ +...+|.++.........+...+... .+.++++++. +|+. .
T Consensus 442 ----~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 442 ----LPYLFLGMQHMQLGNILLANEYLQS-SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 3455677777777777777777777 45566666643221111111111111 5667777766 5542 2
Q ss_pred HHH-------HhhhhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHHHH
Q 008435 517 NLL-------TVSNIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLVAM 557 (565)
Q Consensus 517 ~~l-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 557 (565)
..+ ...++.+++.+.+.++. .+..+++|..+|.+|...|+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 222 22223333322222221 133566777777777766543
No 79
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.23 E-value=1.3e-10 Score=99.52 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
++.++.+|..+...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+++|+++++.. |.+.......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-----cccchhHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999998763 2211111122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
..+++.+|.++...|++++|+++|++ +...+|
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~ 110 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNK-SLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCC
Confidence 45788899999999999999999999 555666
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=8.7e-11 Score=118.98 Aligned_cols=189 Identities=10% Similarity=-0.003 Sum_probs=135.0
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHH-------CCCC-------CchHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435 358 KQLKISVENLTPKELIALSVKFLS-------KGDK-------ERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEA 422 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~-------~g~~-------~eAi~~l~~AL~-~dP~~a~A~~~LG~~~~~~g~~~eA 422 (565)
+.+.+...+.+++.++..|..+.. .|+. ++|+..|++|++ ++|++..+|..+|.++...|++++|
T Consensus 39 ~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A 118 (308)
T 2ond_A 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 118 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 345555567789999999988763 5887 899999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH---HH
Q 008435 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL---AR 499 (565)
Q Consensus 423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L---a~ 499 (565)
.+.|+++++ .+|.+++ .++..+|.++.+.|++++|++.|++ +...+|.+... +...+.... +.
T Consensus 119 ~~~~~~al~-----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~--~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 119 HSIYNRLLA-----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHV--YVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHHHT-----SSSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHH-HHTSTTCCTHH--HHHHHHHHHHTSCC
T ss_pred HHHHHHHHh-----ccccCcc------HHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCCHHH--HHHHHHHHHHHcCC
Confidence 999999964 3565441 2577789999999999999999999 66677776543 222222111 11
Q ss_pred HH--HHHHHHHHhcCCCcHHHHHhh-------hhhhHHH---hhhhhh--hh-hhhhhhhccchhHHHHHHHHHhh
Q 008435 500 YV--ANITFLIFATSPSIINLLTVS-------NIIDIIY---VNCYEL--KK-KRFASCFFGFSVLYVMLVAMLKL 560 (565)
Q Consensus 500 ~l--~~~l~~Al~l~P~~~~~l~~~-------~~~~~~~---~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 560 (565)
.- .+.|+++++.+|+...++... ++.+++. +.+.+. .+ ....+.|.+++..+...|+..+.
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 11 789999999999877665333 2222332 333332 12 24667888888777776654433
No 81
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.21 E-value=2.2e-11 Score=108.94 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=89.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHH
Q 008435 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (565)
Q Consensus 390 ~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi 469 (565)
..|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|+++ .+++.+|.++...|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA-------RYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHHhhHHHHH
Confidence 5788899999999999999999999999999999999999765 46544 46788999999999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHH
Q 008435 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINL 518 (565)
Q Consensus 470 ~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~ 518 (565)
+.|++ +..++|+++........++..++..- .++++++++++|+..+.
T Consensus 73 ~~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 73 QSYSY-GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHH-HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHH-HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 99999 67789999865432222222222222 78999999998865543
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=8.7e-11 Score=113.01 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN--------------------------KEPDNINALILMGQTQLQKGLLEEA 422 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--------------------------~dP~~a~A~~~LG~~~~~~g~~~eA 422 (565)
+..++.+|..+...|++++|+..++++++ .+|+++.++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 56788999999999999999999999999 7888899999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV- 501 (565)
Q Consensus 423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l- 501 (565)
+++|+++++. +|.++ .++..+|.++...|++++|++.+++ +...+|+++.... .+|..+
T Consensus 159 ~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~-------~l~~~~~ 218 (258)
T 3uq3_A 159 VKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNK-AIEKDPNFVRAYI-------RKATAQI 218 (258)
T ss_dssp HHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHH
T ss_pred HHHHHHHHhc-----CcccH-------HHHHHHHHHHHHhCCHHHHHHHHHH-HHHhCHHHHHHHH-------HHHHHHH
Confidence 9999999765 34433 4677899999999999999999999 6668888775433 444443
Q ss_pred --------HHHHHHHHhcC------CCcHHHHHhhh
Q 008435 502 --------ANITFLIFATS------PSIINLLTVSN 523 (565)
Q Consensus 502 --------~~~l~~Al~l~------P~~~~~l~~~~ 523 (565)
.++++++++++ |+..+++....
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 78889999998 77666655543
No 83
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.21 E-value=1.5e-10 Score=109.09 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----------------NALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----------------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
++.+..+|..+...|++++|+.+|+++++.+|+++ .+++.+|.++...|++++|+++|+++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999997 99999999999999999999999999765
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
+|++. .+++.+|.++..+|++++|+++|++ +..++|+++..
T Consensus 118 -----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~ 158 (198)
T 2fbn_A 118 -----DKNNV-------KALYKLGVANMYFGFLEEAKENLYK-AASLNPNNLDI 158 (198)
T ss_dssp -----STTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCHHH
T ss_pred -----CcccH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHH
Confidence 35443 4688899999999999999999999 66688887754
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.21 E-value=2.9e-10 Score=106.90 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
++..++.+|..+...|++++|+..++++++.+|++..++..+|.++... |++++|+++|+++++ .|.++.
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~--- 111 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPT--- 111 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSC---
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcc---
Confidence 4678899999999999999999999999999999999999999999999 999999999999964 222221
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCC-CcHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSP-SIINLL 519 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P-~~~~~l 519 (565)
...++..+|.++...|++++|++.+++ +...+|+++.........+...+... .+.++++++.+| +....+
T Consensus 112 -~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 185 (225)
T 2vq2_A 112 -PYIANLNKGICSAKQGQFGLAEAYLKR-SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185 (225)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 124677899999999999999999999 66678887654332222222222211 788999999999 776654
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.20 E-value=1.4e-10 Score=117.20 Aligned_cols=143 Identities=10% Similarity=-0.010 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~--~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.+++.+..+|..+.+.|++++|+..++++++.+|++.......|.+ +...|++++|++.|+++++. +|+++
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~-- 200 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTL-- 200 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCH--
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcH--
Confidence 3578899999999999999999999999999999998666655543 33458999999999999764 45543
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---HHHHHHHHhcCCCcHHHHHh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---ANITFLIFATSPSIINLLTV 521 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---~~~l~~Al~l~P~~~~~l~~ 521 (565)
.++..+|.++..+|++++|++.|++ +...+|+++.....+...+..+|... .++++++++++|++..+..-
T Consensus 201 -----~~~~~la~~~~~~g~~~eA~~~l~~-al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 201 -----LLLNGQAACHMAQGRWEAAEGVLQE-ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4678899999999999999999999 67789999876432211111111111 47889999999998877654
Q ss_pred h
Q 008435 522 S 522 (565)
Q Consensus 522 ~ 522 (565)
.
T Consensus 275 ~ 275 (291)
T 3mkr_A 275 R 275 (291)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.20 E-value=2.5e-11 Score=104.85 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=79.3
Q ss_pred HCCCCCchHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008435 381 SKGDKERPIPLLQLALNK---EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~---dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~ 457 (565)
..|++++|+.+|+++++. +|+++.+++.+|.++...|++++|+++|+++++. +|+++ .+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQ-------ALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCch-------HHHHHHHH
Confidence 468999999999999999 7999999999999999999999999999999765 46543 46788999
Q ss_pred HHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 458 a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
++...|++++|++.+++ +...+|+++..
T Consensus 70 ~~~~~g~~~~A~~~~~~-al~~~p~~~~~ 97 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLK-IIAETSDDETI 97 (117)
T ss_dssp HHHHHTCHHHHHHHHHH-HHHHHCCCHHH
T ss_pred HHHHcCCHHHHHHHHHH-HHHhCCCcHHH
Confidence 99999999999999999 66688888754
No 87
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.20 E-value=2.6e-10 Score=96.64 Aligned_cols=105 Identities=24% Similarity=0.380 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+..++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+.+|+++++. +|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA------ 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH------
Confidence 6788999999999999999999999999999999999999999999999999999999999764 34432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.++..+|.++...|++++|+.++++ +...+|+++..
T Consensus 78 -~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~ 113 (125)
T 1na0_A 78 -EAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPNNAEA 113 (125)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCcHHH
Confidence 3567799999999999999999999 66688888754
No 88
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=2.1e-10 Score=113.14 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
.+++.++.+|..+...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+++|+++++.. +
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~- 73 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------Y- 73 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C-
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------C-
Confidence 3567777788888888888888888888877 7777888888888887 788888888888876431 1
Q ss_pred hhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 008435 443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIG 476 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa 476 (565)
..+++.+|.++.. .|++++|+++|++++
T Consensus 74 ------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 74 ------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp ------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 1345667777776 777777777777733
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=7.1e-11 Score=112.89 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=96.4
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~ 454 (565)
+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+++|++++++ +|+++ .++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~ 127 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNL-------AANIF 127 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999765 56654 46888
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHhhccCCCCchhhhhhhhHHHH--HHHHH--HHHHHHHHhcCCCc
Q 008435 455 SGVACIRQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV--LARYV--ANITFLIFATSPSI 515 (565)
Q Consensus 455 lG~a~~~~g~--~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~--La~~l--~~~l~~Al~l~P~~ 515 (565)
+|.+|...|+ .+++...+++ +. +|. +....+|..+... ++..- +++|+++++++|+.
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKK-LS--SPT-KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCC-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH-Hh--CCC-chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 9999877765 4556777777 33 332 2222334333332 22222 89999999999985
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.18 E-value=2.3e-10 Score=115.70 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
...+..++..+...|+.++|+..+++.++. +|+++.+++.+|.++.+.|++++|+++|++. .+.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~----------~~~---- 130 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG----------DSL---- 130 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC----------CSH----
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC----------CCH----
Confidence 344455566666666677777777776664 4777777777777777777777777766551 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH----HHH--HHHHHHHHhcCCCcHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA----RYV--ANITFLIFATSPSIINLLT 520 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La----~~l--~~~l~~Al~l~P~~~~~l~ 520 (565)
.++..+|.++..+|++++|++.|++ +...+|++... .+..++..+. ..- .+.++++++.+|+...++.
T Consensus 131 ---~~~~~l~~~~~~~g~~~~A~~~l~~-~~~~~p~~~~~--~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 131 ---ECMAMTVQILLKLDRLDLARKELKK-MQDQDEDATLT--QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHH-HHhhCcCcHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 2455566777777777777777777 44455554321 1122222221 111 5666777777776554332
Q ss_pred -------hhhhhhHHHhhhhh--hhhhhhhhhhccchhHHHHHH
Q 008435 521 -------VSNIIDIIYVNCYE--LKKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 521 -------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 555 (565)
..++.+++.+.+.+ ...+.++++++++|+++..+|
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 22233333222222 112446667777777766655
No 91
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=1.9e-10 Score=108.62 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+..++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+++|+++++. +|+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~------ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA------ 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch------
Confidence 4457788888889999999999999885 44 7889999999999999999999999999764 34433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh---------hhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS---------KAHYYDGLVVLARYV---------ANITFLIFA 510 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~---------~~~~~~~~~~La~~l---------~~~l~~Al~ 510 (565)
.+++.+|.++...|++++|++.|++ +....|++... ......++..+|..+ .++++++++
T Consensus 72 -~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 72 -VAYFQRGMLYYQTEKYDLAIKDLKE-ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHcccHHHHHHHHHH-HHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677889999999999999999998 55567765510 001112334555554 788889999
Q ss_pred cCCCc
Q 008435 511 TSPSI 515 (565)
Q Consensus 511 l~P~~ 515 (565)
++|+.
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98875
No 92
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.18 E-value=3.2e-11 Score=124.63 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=116.7
Q ss_pred HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--------hhhhHHHHHH
Q 008435 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS 452 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~--------~~~~~~~~a~ 452 (565)
..+++++|+..++++++.+|+++.+++.+|.++...|++++|+++|++|+++. |.+. +..+....++
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-----EYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-----hccccCChHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999998753 4431 0111223578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHh
Q 008435 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYV 530 (565)
Q Consensus 453 ~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~ 530 (565)
.++|.++..+|++++|+++|++ +..++|+++........++..++..- +++|+++++++|+...++...........
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNK-ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 67789998755332221221222111 88999999999999887776655544444
Q ss_pred hhhhhhhhhhhhhh
Q 008435 531 NCYELKKKRFASCF 544 (565)
Q Consensus 531 ~~~~~~~~~~~~~~ 544 (565)
.+.++.++.|.+++
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444455555544
No 93
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.18 E-value=2.2e-10 Score=125.14 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
...+..++..+...|++++|+..++++++.+|+++.+++.+|.+|...|++++|+++|+++++. +|.+.
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~------ 407 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-----DPQFG------ 407 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH------
Confidence 4445666677777777777777777778888888899999999999999999999999998654 34433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHH------
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLT------ 520 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~------ 520 (565)
.++..+|.++.+.|++++|++.|++ +...+|+++.........+...+... .+.++++++.+|+....+.
T Consensus 408 -~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 -PAWIGFAHSFAIEGEHDQAISAYTT-AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485 (597)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3577899999999999999999999 55678877754332222222222222 7899999999998665442
Q ss_pred -hhhhhhHHHh---hhhhh------hhhhhhhhhccchhHHHHHHHHHh
Q 008435 521 -VSNIIDIIYV---NCYEL------KKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 521 -~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
..++.+++.+ ...+. .+..+.++|.++|.+|...|+..+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 2233333333 33322 222357899999999988776443
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=3.1e-11 Score=111.91 Aligned_cols=132 Identities=11% Similarity=0.096 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++. +| ++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~~------ 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DNS------ 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-ChH------
Confidence 457899999999999999999999999999999999999999999999999999999999543 34 331
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc
Q 008435 450 VASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI 515 (565)
Q Consensus 450 ~a~~~lG~a-~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~ 515 (565)
.+..++.+ +...++..+|++.+++ +...+|+++.....+...+...|..- +++++++++.+|+.
T Consensus 75 -~~~~~~~~~~~~~~~~~~a~~~~~~-al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 75 -YKSLIAKLELHQQAAESPELKRLEQ-ELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 12223322 2333445568999999 66789998865432222222222211 78899999999875
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=2.2e-10 Score=126.05 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=83.1
Q ss_pred CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~ 461 (565)
.|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++ .+|++. .++..+|.++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~-------~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-----LHPGHP-------EAVARLGRVRWT 69 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TSTTCH-------HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-------HHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999965 356543 467889999999
Q ss_pred cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHH
Q 008435 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLL 519 (565)
Q Consensus 462 ~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l 519 (565)
+|++++|+++|++ +...+|+++.... .+|..+ .++++++++++|+...++
T Consensus 70 ~g~~~~A~~~~~~-al~~~p~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 70 QQRHAEAAVLLQQ-ASDAAPEHPGIAL-------WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp TTCHHHHHHHHHH-HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHH-HHhcCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999 6668898875433 444444 889999999999876544
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=4e-10 Score=111.51 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
.+..++.+|..+...|++++|+.+++++++. +|..+.++..+|.++...|++++|+++|+++++...-...+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999994 78889999999999999999999999999998763000001
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC-----CCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE-----PEEPKSKAHYYDGLVVLARYV---------ANIT 505 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~-----P~~~~~~~~~~~~~~~La~~l---------~~~l 505 (565)
+ .+....++..+|.++...|++++|+++++++.. .. ++++. ....+..+|..+ ++++
T Consensus 106 ~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 106 D----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREKVLGKDHPD----VAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp T----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C----ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHhcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 123345788899999999999999999999443 32 23332 223445666655 7888
Q ss_pred HHHHhc
Q 008435 506 FLIFAT 511 (565)
Q Consensus 506 ~~Al~l 511 (565)
+++++.
T Consensus 177 ~~a~~~ 182 (311)
T 3nf1_A 177 QRALEI 182 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.7e-10 Score=121.32 Aligned_cols=108 Identities=9% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..+.+++.+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.++
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~- 372 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----FPEAP- 372 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----STTCS-
T ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cccCH-
Confidence 334445556666666666666666666666666666666666666666666666666666666666543 23322
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.++..+|.++...|++++|++.+++ +...+|+++
T Consensus 373 ------~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~~~~~ 406 (514)
T 2gw1_A 373 ------EVPNFFAEILTDKNDFDKALKQYDL-AIELENKLD 406 (514)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTSS
T ss_pred ------HHHHHHHHHHHHCCCHHHHHHHHHH-HHHhhhccc
Confidence 2355566666666666666666666 444555544
No 98
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=1.5e-10 Score=106.58 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=72.7
Q ss_pred HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~----------~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
.+.+++++|++.++++++++|+++++|+.+|.++...+++ ++|+..|++||++ +|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~------- 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD------- 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcH-------
Confidence 3456678999999999999999999999999999999875 5999999999775 56654
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHhhccCCCC
Q 008435 450 VASQWSGVACIRQE-----------KWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 450 ~a~~~lG~a~~~~g-----------~~~eAi~~leraa~~l~P~~ 483 (565)
.+++++|.+|..+| ++++|+++|++ +..++|++
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k-Al~l~P~~ 124 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ-AVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHCTTC
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH-HHHhCCCC
Confidence 57889999998875 56666666666 44455554
No 99
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=5.9e-11 Score=122.76 Aligned_cols=136 Identities=9% Similarity=0.048 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-----------------~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
.+..+..+|..+...|++++|+.+|++|++.+|++. .+|+++|.++...|++++|+++|++|+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356688899999999999999999999999999988 499999999999999999999999997
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---HHHHHH
Q 008435 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---ANITFL 507 (565)
Q Consensus 431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---~~~l~~ 507 (565)
++ +|++. .+++++|.+|..+|++++|++.|++ +..++|+++.....+........... .+.|++
T Consensus 258 ~~-----~p~~~-------~a~~~lg~a~~~~g~~~~A~~~l~~-al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 258 TE-----EEKNP-------KALFRRGKAKAELGQMDSARDDFRK-AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HH-----CTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHH-TTC--------------------------------
T ss_pred Hh-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 45543 5788999999999999999999999 77789988765332211100001111 567788
Q ss_pred HHhcCCCcH
Q 008435 508 IFATSPSII 516 (565)
Q Consensus 508 Al~l~P~~~ 516 (565)
++..+|+..
T Consensus 325 ~l~~~p~~~ 333 (338)
T 2if4_A 325 IFKGKDEGG 333 (338)
T ss_dssp ---------
T ss_pred hhCCCCCCC
Confidence 888888654
No 100
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.13 E-value=3.3e-10 Score=122.10 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~---------------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
..+..+..+|..+...|++++|+..|++|++++|++ ..+|+++|.+|...|++++|+++|++|++
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346778999999999999999999999999999999 79999999999999999999999999976
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhh
Q 008435 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (565)
Q Consensus 432 l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~ 488 (565)
+ +|+++ .+++++|.+|..+|++++|+..|++ +..++|+++....
T Consensus 346 ~-----~p~~~-------~a~~~~g~a~~~~g~~~~A~~~~~~-al~l~P~~~~a~~ 389 (457)
T 1kt0_A 346 L-----DSANE-------KGLYRRGEAQLLMNEFESAKGDFEK-VLEVNPQNKAARL 389 (457)
T ss_dssp H-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTC----CHHH
T ss_pred c-----CCccH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHH
Confidence 5 45543 5788999999999999999999999 7779999886544
No 101
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.12 E-value=3e-10 Score=104.58 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=100.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhhhh
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT-QLQKGLL--EEAVEYLECAISKLFL 435 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~-~~~~g~~--~eA~~~~~rAl~l~~l 435 (565)
.+.+...+.++..++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+ +...|++ ++|+++|+++++.
T Consensus 34 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence 344445566789999999999999999999999999999999999999999999 8899999 9999999999765
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+|++. .+++.+|.++...|++++|+.+|++ +...+|+++.
T Consensus 111 --~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~ 150 (177)
T 2e2e_A 111 --DSNEI-------TALMLLASDAFMQANYAQAIELWQK-VMDLNSPRIN 150 (177)
T ss_dssp --CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCTTSC
T ss_pred --CCCcH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHhhCCCCcc
Confidence 45543 4678899999999999999999999 6668888764
No 102
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.11 E-value=6.6e-11 Score=127.55 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=117.4
Q ss_pred HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--------hhhhHHHHHH
Q 008435 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS 452 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~--------~~~~~~~~a~ 452 (565)
..+++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++|+++. |.+. +..+....++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998764 4331 0111223578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHh
Q 008435 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYV 530 (565)
Q Consensus 453 ~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~ 530 (565)
+++|.||.++|++++|+.+|++ +..++|+++........++..++..- +++|+++++++|++..++...........
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDK-ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 67789998755332222222222111 89999999999999888877776666666
Q ss_pred hhhhhhhhhhhhhhccch
Q 008435 531 NCYELKKKRFASCFFGFS 548 (565)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~ 548 (565)
.+.++.+++|.+++-.+.
T Consensus 400 ~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 400 EHNERDRRIYANMFKKFA 417 (457)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 666677777777765443
No 103
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.11 E-value=3.7e-10 Score=99.53 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
+.+.++..+|.+++..|++++|+++|++|+++ +|+++ .++.++|.+|..+|++++|++.+++ +..++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~-------~~~~nlg~~~~~~~~~~~A~~~~~~-al~~~ 72 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI-------TFYNNKAAVYFEEKKFAECVQFCEK-AVEVG 72 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHhHHHHHHHhhhHHHHHHHHHH-HHHhC
Confidence 45678899999999999999999999999875 46554 4688899999999999999999999 66677
Q ss_pred CCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc
Q 008435 481 PEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI 515 (565)
Q Consensus 481 P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~ 515 (565)
|+++........++..+|..+ +++|+++++.+|+.
T Consensus 73 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 776654444445666777766 78999999988864
No 104
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.09 E-value=4.9e-11 Score=129.43 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
+.++.+|..+...|++++|+++|++|++.+|+++.+|+.+|.++.+.|++++|+++|++|+++ +|+++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~------- 74 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI------- 74 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH-------
Confidence 345567778889999999999999999999999999999999999999999999999999654 56544
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhH--HHHHHHHH--HHHHH-----------HHHhcCCC
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG--LVVLARYV--ANITF-----------LIFATSPS 514 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~--~~~La~~l--~~~l~-----------~Al~l~P~ 514 (565)
.+++++|.+|..+|++++|++.|++ +..++|+++.....+..+ +...+... ++.++ ++++++|+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYET-VVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 4688899999999999999999999 666899888654433222 11111111 66677 77777776
Q ss_pred c
Q 008435 515 I 515 (565)
Q Consensus 515 ~ 515 (565)
+
T Consensus 154 ~ 154 (477)
T 1wao_1 154 Y 154 (477)
T ss_dssp C
T ss_pred c
Confidence 4
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=8.4e-10 Score=104.08 Aligned_cols=110 Identities=10% Similarity=0.085 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh-----
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----- 442 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~----- 442 (565)
++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. .|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~ 110 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-----LRGNQLIDYK 110 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCSEEECG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCccHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999764 34322
Q ss_pred -----hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 443 -----EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 443 -----~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
..+ ....+++++|.++...|++++|++.|++ +...+|++.
T Consensus 111 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~ 155 (213)
T 1hh8_A 111 ILGLQFKL-FACEVLYNIAFMYAKKEEWKKAEEQLAL-ATSMKSEPR 155 (213)
T ss_dssp GGTBCCEE-EHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCSGG
T ss_pred HhccccCc-cchHHHHHHHHHHHHccCHHHHHHHHHH-HHHcCcccc
Confidence 011 1235788899999999999999999999 666888764
No 106
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=8.3e-10 Score=111.72 Aligned_cols=164 Identities=13% Similarity=-0.041 Sum_probs=117.2
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQ-------KGLL-------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~-------~g~~-------~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a 451 (565)
++|+..|++|++.+|+++++|+.+|.++.. .|++ ++|.+.|++|++. .+|++. .+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----~~p~~~-------~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----LLKKNM-------LL 101 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----TTTTCH-------HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----hCcccH-------HH
Confidence 578899999999999999999999999874 5886 9999999999652 245443 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch-hhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhh------
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVS------ 522 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~-~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~------ 522 (565)
|..+|.++...|++++|++.|++ +...+|.++. .+..+.......+..- .+.|+++++.+|....++-..
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNR-LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77899999999999999999999 6668888875 4333322222222222 789999999999765433211
Q ss_pred --h---hhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHhhhh
Q 008435 523 --N---IIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLKLRS 562 (565)
Q Consensus 523 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (565)
+ +...+++...+.. +..+++|.++|..+...|+..+.|.
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 2223333333333 3478889999988887776655544
No 107
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.07 E-value=8.7e-11 Score=98.75 Aligned_cols=101 Identities=7% Similarity=0.021 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++ .+|++. +...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----YTSTAE-HVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCSSTT-SHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcc-HHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999964 456642 1222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
...+++.+|.++...|++++|++.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 345788899999999999998887766
No 108
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=2.6e-10 Score=110.82 Aligned_cols=137 Identities=17% Similarity=0.058 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
..+..+..+|..+...|++++|+.+++++++. +|..+.++..+|.++...|++++|+++|+++++...-...
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 34677899999999999999999999999987 5778999999999999999999999999999876311111
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----cCCCCchhhhhhhhHHHHHHHHH---------HHHH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL----KEPEEPKSKAHYYDGLVVLARYV---------ANIT 505 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~----l~P~~~~~~~~~~~~~~~La~~l---------~~~l 505 (565)
+++ +....++..+|.++...|++++|+++++++... ..++++.. ...+..+|..+ .+++
T Consensus 121 ~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 121 KFH----PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV----AKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp TTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 221 233457888999999999999999999994432 12333321 23344556555 6788
Q ss_pred HHHHhc
Q 008435 506 FLIFAT 511 (565)
Q Consensus 506 ~~Al~l 511 (565)
+++++.
T Consensus 193 ~~~l~~ 198 (283)
T 3edt_B 193 KEILTR 198 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
No 109
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.7e-09 Score=115.17 Aligned_cols=150 Identities=13% Similarity=0.013 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.++..++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++.. |+++..
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~- 408 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-----NKLDGI- 408 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTSSSC-
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-----hccchH-
Confidence 33456666677777777777777777777777777777777777777777777777777777775542 221100
Q ss_pred hHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHH
Q 008435 446 DLLIVASQWSGVACIR---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLT 520 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~---~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~ 520 (565)
.....++..+|.++.. .|++++|++.+++ +...+|+++.........+...+..- .++++++++++|+..+.+.
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEK-ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 0001245667777777 7777777777777 44456665543221111111111111 5667777777777666554
Q ss_pred hh
Q 008435 521 VS 522 (565)
Q Consensus 521 ~~ 522 (565)
..
T Consensus 488 ~~ 489 (514)
T 2gw1_A 488 AI 489 (514)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=5.7e-10 Score=112.28 Aligned_cols=147 Identities=14% Similarity=0.032 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHC-CCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 369 PKELIALSVKFLSK-GDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 369 ~~~l~~lA~~l~~~-g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+..+..+|..+... |++++|+.+|++|++++|++ ..++..+|.++...|++++|+++|+++++. +|++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~ 191 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-----SMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TSSC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----HhcC
Confidence 45678999999996 99999999999999999865 678999999999999999999999999764 3443
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----------HHHHHHHHh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-----------ANITFLIFA 510 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-----------~~~l~~Al~ 510 (565)
.........++.++|.++..+|++++|+.+|++ +..++|.++..... ..+..++..+ ++.|++++.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~--~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE-GQSEDPNFADSRES--NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG-GGCC---------H--HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCCCcHHH--HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 211111223577899999999999999999999 77788887653221 1122222222 455666666
Q ss_pred cCCCcHHHHHhhh
Q 008435 511 TSPSIINLLTVSN 523 (565)
Q Consensus 511 l~P~~~~~l~~~~ 523 (565)
++|....++..+.
T Consensus 269 l~~~~~~~~~~~k 281 (292)
T 1qqe_A 269 LDKWKITILNKIK 281 (292)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 7776665555443
No 111
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.06 E-value=3.7e-10 Score=106.37 Aligned_cols=169 Identities=9% Similarity=-0.010 Sum_probs=106.4
Q ss_pred HHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh---------hhHH
Q 008435 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA---------IDLL 448 (565)
Q Consensus 378 ~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~---------~~~~ 448 (565)
.....|++++|...++...+..++.+..+..+|..+...|++++|+++|+++++. .|.++.. ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-----FIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HhcccccchhhHHHHHHHHH
Confidence 3455788888888888888888899999999999999999999999999999764 3433310 0111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIID 526 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~ 526 (565)
..++.++|.++...|++++|+.++++ +...+|+++........++..++... .++++++++++|+...++.......
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASK-VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 25788899999999999999999999 66688888754332222222222222 7899999999999998887776665
Q ss_pred HHHhhhhhhhhhhhhhhhccchhHHHH
Q 008435 527 IIYVNCYELKKKRFASCFFGFSVLYVM 553 (565)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (565)
.......+..++ .-+.+++.|.+|-+
T Consensus 167 ~~~~~~~~~~~~-~~~~~f~~~~~~~~ 192 (198)
T 2fbn_A 167 NKLKEARKKDKL-TFGGMFDKGPLYEE 192 (198)
T ss_dssp HHHHHHHC-------------------
T ss_pred HHHHHHHHHHHH-HHHHHhcccchhhc
Confidence 554444444444 44556888888754
No 112
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.06 E-value=7.3e-10 Score=115.11 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a----~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
....++.+|..+...|++++|+.+|+++++.+|++. .+++.+|.++...|++++|+++|++++++. -.. .
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-~---- 120 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-KSM-N---- 120 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHT-T----
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc-c----
Confidence 467788999999999999999999999999999997 689999999999999999999999998763 000 0
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+.+....++..+|.++...|++++|+++++++..
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233345788899999999999999999999443
No 113
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=7.1e-10 Score=116.35 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN----------------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~----------------~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+..+..+|..+...|++++|+..|++|++ .+|.++.+|+.+|.++...|++++|+++|++|++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE- 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-
Confidence 35578899999999999999999999999 8999999999999999999999999999999964
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 433 ~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.+|+++ .+++.+|.+|..+|++++|++.|++ +..++|+++..
T Consensus 302 ----~~p~~~-------~a~~~lg~~~~~~g~~~eA~~~l~~-Al~l~P~~~~~ 343 (370)
T 1ihg_A 302 ----IDPSNT-------KALYRRAQGWQGLKEYDQALADLKK-AQEIAPEDKAI 343 (370)
T ss_dssp ----TCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred ----hCchhH-------HHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHH
Confidence 356544 5788899999999999999999999 66788888754
No 114
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.04 E-value=1.1e-09 Score=112.49 Aligned_cols=107 Identities=14% Similarity=0.039 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
....++.+|..+...|++++|+.+|+++++.+|++ +.++..+|.++...|++++|+++|++++++.. .. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~--~--- 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-TI--G--- 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HT--T---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hc--c---
Confidence 57788999999999999999999999999999999 57899999999999999999999999987630 00 0
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
+.+....++..+|.++...|++++|++++++ +....|
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~ 118 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQR-HLDISR 118 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHH
Confidence 1223345788899999999999999999999 443433
No 115
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.03 E-value=1.7e-09 Score=107.16 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
+...++..|..+...|++++|+.+++++++.+|++ +.++..+|.++...|++++|+++++++++...-. +
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~---- 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G---- 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c----
Confidence 45678899999999999999999999999999999 5789999999999999999999999998763000 0
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
+.+....++..+|.++...|++++|+++++++.
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 122334578889999999999999999999943
No 116
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=3.9e-09 Score=103.90 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 368 ~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
++..++.+|..+.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+++|++|++..
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------ 108 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------ 108 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------
Confidence 46778889999988 899999999999998885 88999999999999 999999999999996531
Q ss_pred CChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------------H
Q 008435 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------------A 502 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------------~ 502 (565)
+ ..++..+|.+|.. .|++++|+++|++++. .+ ++.. ++ .+|..+ .
T Consensus 109 -~-------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~--~~~a--~~-----~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 109 -Y-------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN--DGDG--CT-----ILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp -C-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT--CHHH--HH-----HHHHHHHHTSSSCCCHHHHH
T ss_pred -C-------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC--cHHH--HH-----HHHHHHHcCCCCCCCHHHHH
Confidence 1 2467788999988 8999999999999444 33 2222 12 333222 6
Q ss_pred HHHHHHHhcCCCcH-----HHHHh----hhhhhHHHhhhhhhhhhhhhhhhccchhHHHH
Q 008435 503 NITFLIFATSPSII-----NLLTV----SNIIDIIYVNCYELKKKRFASCFFGFSVLYVM 553 (565)
Q Consensus 503 ~~l~~Al~l~P~~~-----~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (565)
++++++++.++... .+... ..+.+.+.+.+..+.+...+++++++|.+|..
T Consensus 171 ~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 171 ASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 78888888754211 12222 33344444444444455567888888888875
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.5e-09 Score=94.23 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
|..++++..+|..+...|++++|+++|++++++ +|+++ .++.++|.++..+|++++|++.+++ +..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-al~~ 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNK-AIEK 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHH-HHHh
Confidence 556889999999999999999999999999765 45543 4688899999999999999999999 6778
Q ss_pred CCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcC------CCcHHHHHhhhh
Q 008435 480 EPEEPKSKAHYYDGLVVLARYV--ANITFLIFATS------PSIINLLTVSNI 524 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~------P~~~~~l~~~~~ 524 (565)
+|+++.........+..++..- .++++++++++ |+...++....+
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 9998755332211211122111 78999999999 777777666544
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=4.1e-09 Score=101.54 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQ------------------KGLLEEAVEYL 426 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~---A~~~LG~~~~~------------------~g~~~eA~~~~ 426 (565)
.++.++.+|..+...|++++|+..|+++++.+|++.. +++.+|.++.. .|++++|+..|
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 3578999999999999999999999999999999975 89999999986 57899999999
Q ss_pred HHHHHhhhhcCCCCChhhhhHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH
Q 008435 427 ECAISKLFLAGHPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496 (565)
Q Consensus 427 ~rAl~l~~l~~~P~~~~~~~~~----------~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~ 496 (565)
+++++ ..|+++...... ......+|.++...|++++|+..|++ +....|+++.. .+++..
T Consensus 120 ~~~l~-----~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l~~~p~~~~~----~~a~~~ 189 (225)
T 2yhc_A 120 SKLVR-----GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG-MLRDYPDTQAT----RDALPL 189 (225)
T ss_dssp HHHHT-----TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTSHHH----HHHHHH
T ss_pred HHHHH-----HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHCcCCCcc----HHHHHH
Confidence 99964 457654222111 11235689999999999999999999 66688887632 233445
Q ss_pred HHHHH---------HHHHHHHHhcCCCc
Q 008435 497 LARYV---------ANITFLIFATSPSI 515 (565)
Q Consensus 497 La~~l---------~~~l~~Al~l~P~~ 515 (565)
+|.++ ++.++++....|+.
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 56555 67777777777764
No 119
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.00 E-value=2.8e-09 Score=110.63 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
++.+|..+...|++++|+.++++|+++ ++..+.+++.+|.++...|++++|+++|++|+++. ...++ ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~---~~ 180 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY--KEHEA---YN 180 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTCST---TH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCcc---ch
Confidence 445999999999999999999999997 33467999999999999999999999999998763 11111 12
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFA 510 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~ 510 (565)
.....++.++|.++..+|++++|+++|++ +....+.... ......++.++|.++ +++++++++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQK-AYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22334677788888888888888888888 4333332221 112233445666555 677777777
No 120
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=1e-09 Score=114.01 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~-------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
.+..++.+|..+...|++++|+.++++|++..++ .+.++..+|.++...|++++|+++|++|+++. +.
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~ 216 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-----EA 216 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HH
Confidence 3677899999999999999999999999998443 46799999999999999999999999998763 11
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC--CC-chhhhhhhhHHHHHHHHH---------HHHHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP--EE-PKSKAHYYDGLVVLARYV---------ANITFLI 508 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P--~~-~~~~~~~~~~~~~La~~l---------~~~l~~A 508 (565)
.. +......++.++|.+|..+|++++|+++++++.. ... .+ + ....++..+|..+ .++++++
T Consensus 217 ~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 217 EK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA-VFEESNILP----SLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCGG----GHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhccch----hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 1223345788999999999999999999999443 211 11 1 1233445666665 7888998
Q ss_pred HhcCC-----CcHHHHH---h----hhh---hhHHHhhhhh-hhhhhhhhhhccchhHHHHHHHHHh
Q 008435 509 FATSP-----SIINLLT---V----SNI---IDIIYVNCYE-LKKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 509 l~l~P-----~~~~~l~---~----~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+++.+ .....+. . .++ ...+++...+ .......+++.++|.+|...|+-.|
T Consensus 291 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 357 (383)
T 3ulq_A 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQK 357 (383)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 88743 2221111 1 011 1111111111 1123456788899999988876544
No 121
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.99 E-value=3.1e-09 Score=96.65 Aligned_cols=142 Identities=14% Similarity=0.074 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---hcCCCCChhh---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLF---LAGHPTEPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~---l~~~P~~~~~---~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.+..+..+|..+...|++++|+++|++|++... ...+|.+++. .+....++.++|.++..+|++++|+..+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~- 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE- 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 467889999999999999999999999987630 1123333211 222335788999999999999999999999
Q ss_pred hhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcH-HHHHhhhhhhHHHhhhhhhhhhhhhhhh
Q 008435 476 GNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSII-NLLTVSNIIDIIYVNCYELKKKRFASCF 544 (565)
Q Consensus 476 a~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (565)
+..++|+++........++..++... +++++++++++|+.. .+...............+..++.|.+.|
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 160 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC------
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66789998865332222222222222 899999999999998 6666666665555555555555555443
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=1.4e-09 Score=100.56 Aligned_cols=112 Identities=14% Similarity=-0.026 Sum_probs=91.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhcC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAG 437 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~-~~g~~~eA~~~~~rAl~l~~l~~ 437 (565)
.+.+...|.+++.++.+|..+...|++++|+..++++++.+| ++..+..+|.+.. ..++..+|+++|+++++.
T Consensus 30 ~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----- 103 (176)
T 2r5s_A 30 QTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA----- 103 (176)
T ss_dssp HTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----
Confidence 344555566789999999999999999999999999999999 9888887776643 334455689999999765
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+|+++ .+++.+|.++...|++++|++.|++ +...+|+..
T Consensus 104 ~P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p~~~ 142 (176)
T 2r5s_A 104 NPDNF-------ELACELAVQYNQVGRDEEALELLWN-ILKVNLGAQ 142 (176)
T ss_dssp STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTTT
T ss_pred CCCCH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHHhCcccC
Confidence 46544 4678899999999999999999999 666787754
No 123
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.98 E-value=4e-09 Score=90.12 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=74.5
Q ss_pred CchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCH
Q 008435 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465 (565)
Q Consensus 386 ~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~ 465 (565)
++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++. +|.+. .+++.+|.++...|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYS-------VAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHcCCH
Confidence 68999999999999999999999999999999999999999999765 35433 4678899999999999
Q ss_pred HHHHHHHHHHhhccCCCC
Q 008435 466 EEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 466 ~eAi~~leraa~~l~P~~ 483 (565)
++|++.|++ +...+|++
T Consensus 70 ~~A~~~~~~-al~~~~~~ 86 (115)
T 2kat_A 70 AGARQAWES-GLAAAQSR 86 (115)
T ss_dssp HHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHH-HHHhcccc
Confidence 999999999 55455543
No 124
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.98 E-value=6.4e-09 Score=101.15 Aligned_cols=170 Identities=12% Similarity=0.049 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.++..+..+|..+...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+++|+++++. +|++.
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~---- 145 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP---- 145 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh----
Confidence 357789999999999999999999999999999999999999999999999999999999999765 35433
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCc--
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSI-- 515 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~-- 515 (565)
....+++. +...|++++|+..+++ +....|.+... + .++..+ .+.++++++.+|+.
T Consensus 146 ---~~~~~~~~-~~~~~~~~~A~~~~~~-~~~~~~~~~~~---~-----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 146 ---FRSLWLYL-AEQKLDEKQAKEVLKQ-HFEKSDKEQWG---W-----NIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp ---HHHHHHHH-HHHHHCHHHHHHHHHH-HHHHSCCCSTH---H-----HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred ---HHHHHHHH-HHHhcCHHHHHHHHHH-HHhcCCcchHH---H-----HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 12223333 3667999999999998 44456665432 1 112222 56677777766643
Q ss_pred --HHHH-------HhhhhhhHHHhhhhhhhhhhhhhhhccchhHHHHHHHHHh
Q 008435 516 --INLL-------TVSNIIDIIYVNCYELKKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 516 --~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
...+ ...++.+++.+.+.... ...++-+...|.++..++...+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~l~~~~~ 264 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAV-ANNVHNFVEHRYALLELSLLGQ 264 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHh
Confidence 1211 22222223322222222 2234455666777777776554
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.3e-09 Score=109.70 Aligned_cols=112 Identities=10% Similarity=0.051 Sum_probs=97.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
+.+...|.+++.++.+|..+.+.|++++|+..++++++.+|++...+...+..+...++.++|++.|+++++. +|
T Consensus 142 ~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-----~P 216 (287)
T 3qou_A 142 DAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-----NP 216 (287)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----CT
T ss_pred HHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-----CC
Confidence 3444455678999999999999999999999999999999988888888888899999999999999999765 46
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+++ .+++.+|.++...|++++|++.|++ +...+|++.
T Consensus 217 ~~~-------~~~~~la~~l~~~g~~~~A~~~l~~-~l~~~p~~~ 253 (287)
T 3qou_A 217 EDA-------ALATQLALQLHQVGRNEEALELLFG-HLRXDLTAA 253 (287)
T ss_dssp TCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTGG
T ss_pred ccH-------HHHHHHHHHHHHcccHHHHHHHHHH-HHhcccccc
Confidence 554 4688899999999999999999999 667888873
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=5.6e-09 Score=89.06 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++. +|.+.
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 103 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA----- 103 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-----
Confidence 46778889999999999999999999999999999999999999999999999999999999764 34332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
.++..+|.++...|++++|+.++++ +...+|+
T Consensus 104 --~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~ 135 (136)
T 2fo7_A 104 --EAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPR 135 (136)
T ss_dssp --HHHHHHHHHHHTTTCHHHHHHHHHH-HHHHSTT
T ss_pred --HHHHHHHHHHHHHccHHHHHHHHHH-HHccCCC
Confidence 3567799999999999999999999 5555554
No 127
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.93 E-value=4.3e-09 Score=95.88 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=83.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.++.++.+++.+|.++...|++++|+++|++++++ +|+++ .+++++|.++..+|++++|+++|++ +.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~-al 72 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANP-------IYLSNRAAAYSASGQHEKAAEDAEL-AT 72 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HH
Confidence 46778999999999999999999999999999765 35543 4688899999999999999999999 66
Q ss_pred ccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHH
Q 008435 478 LKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIIN 517 (565)
Q Consensus 478 ~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~ 517 (565)
.++|+++.....+...+..++... +++++++++++|+...
T Consensus 73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 789998755332222222222111 8999999999998765
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.91 E-value=1.1e-08 Score=89.14 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
..++.+|..+.+.|++++|+..|+++++. +|+++ .+++.+|.++...|++++|++.|++ +..++|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~P~~ 84 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENEKDGLAIIALNH-ARMLDPKD 84 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTC
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCC
Confidence 34789999999999999999999999765 46544 4788899999999999999999999 77799999
Q ss_pred chhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHH
Q 008435 484 PKSKAHYYDGLVVLARYV--ANITFLIFATSPSIIN 517 (565)
Q Consensus 484 ~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~ 517 (565)
+.........+...+..- +++++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 865443333333333333 7899999999998654
No 129
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.91 E-value=2.3e-09 Score=98.91 Aligned_cols=115 Identities=12% Similarity=-0.021 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh-----hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~-----~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
.+..+...|..+...|++++|+++|++|+++. |+++. ..+....+|.++|.++..+|++++|++.+++ +
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-----p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k-A 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-----HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK-A 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH-H
Confidence 46778999999999999999999999998764 54210 1112234799999999999999999999999 6
Q ss_pred hcc-------CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 477 NLK-------EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 477 ~~l-------~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
..+ +|+++..+ ..++++.|..+ +++|+++++++|+.....++.++.
T Consensus 84 L~l~n~~~e~~pd~~~A~---~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLW---ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHHHHHHCCTTSTHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred HHhhhccccCCCchHHHH---HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 668 99887553 11223555554 899999999999887776666554
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=7.1e-09 Score=99.33 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g----~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
-+++.++.+|..+...+++++|+.+|++|++. +++.+++.||.+|.. + ++++|+++|++|++. .+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-------g~- 84 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-------GS- 84 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-------TC-
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-------CC-
Confidence 47899999999999999999999999999875 799999999999998 6 899999999999642 11
Q ss_pred hhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------------HHHH
Q 008435 443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------------ANIT 505 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------------~~~l 505 (565)
..+++++|.+|.. .+++++|+++|++++. ..|.+. ...+...+|..+ .+++
T Consensus 85 ------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 85 ------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDA-----AVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp ------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHH-----HHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcc-----hHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 2467889999987 8999999999999444 444210 112333555444 6777
Q ss_pred HHHHhc
Q 008435 506 FLIFAT 511 (565)
Q Consensus 506 ~~Al~l 511 (565)
+++++.
T Consensus 153 ~~A~~~ 158 (212)
T 3rjv_A 153 KGSSSL 158 (212)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 777776
No 131
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=4.5e-09 Score=109.08 Aligned_cols=134 Identities=9% Similarity=-0.047 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..++..|..+...|++++|+.++++|+++. +..+.+++.+|.++...|++++|++++++|++.. ...++
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~~--- 176 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY--QNHPL--- 176 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSTT---
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--HhCCC---
Confidence 346778999999999999999999999873 3468899999999999999999999999998763 11111
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHh
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFA 510 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~ 510 (565)
.......++.++|.++..+|++++|+++|+++.. ..+.... ......++.++|.++ +++++++++
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE-LAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122345788899999999999999999999443 3221111 112234555667665 566777776
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=8.4e-09 Score=104.45 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+..+..+|..+...|++++|+.+|++|+++.++ .+.++..+|.+|.. |++++|+++|++|+++. +...
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-----~~~~ 149 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-----ENEE 149 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-----HhCC
Confidence 456778899999999999999999999998543 26789999999999 99999999999998764 1100
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSP 513 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P 513 (565)
.......++.++|.++..+|++++|+++|++ +..+.|++.... .....+..++.++ .+++++++ ++|
T Consensus 150 -~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 150 -RLRQAAELIGKASRLLVRQQKFDEAAASLQK-EKSMYKEMENYP-TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred -ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHcCChh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 1122235788899999999999999999999 554544433210 1111233333333 78999999 999
Q ss_pred CcH
Q 008435 514 SII 516 (565)
Q Consensus 514 ~~~ 516 (565)
++.
T Consensus 226 ~~~ 228 (307)
T 2ifu_A 226 GFS 228 (307)
T ss_dssp TST
T ss_pred CCC
Confidence 754
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.88 E-value=3.2e-09 Score=107.05 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~ 449 (565)
+..+..|..+...|++++|.+.|+.++..+|++. +++.+|.++.+.|+|++|+.+|+++++. | ++....
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~----d~~~~~ 171 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P----DKFLAG 171 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S----CHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C----CcccHH
Confidence 4457789999999999999999999999999999 9999999999999999999999988431 1 111123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHH
Q 008435 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLT 520 (565)
Q Consensus 450 ~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~ 520 (565)
.+++++|.++..+|++++|+.+|+++.. .|.+|.. +.++.+.+|.++ .+.|+++++.+|+ ..+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~--g~~~P~~---~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND--SPAGEAC---ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--STTTTTT---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc--CCCCccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 4789999999999999999999999443 2322321 122333444444 7899999999999 77665
Q ss_pred hhh
Q 008435 521 VSN 523 (565)
Q Consensus 521 ~~~ 523 (565)
...
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 134
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.88 E-value=7e-09 Score=91.48 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+..+..+|..+...|++++|+.+++++++..++.. .++..+|.++...|++++|+++|+++++.. . +..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~-~~~-- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--R-QLK-- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-HTT--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-HhC--
Confidence 45678999999999999999999999999876532 589999999999999999999999998763 0 001
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+......++.++|.++...|++++|+++++++..
T Consensus 84 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 84 -DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1222345688899999999999999999999443
No 135
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.88 E-value=5.4e-09 Score=108.54 Aligned_cols=177 Identities=8% Similarity=-0.022 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~-------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
.++.++.+|..+...|++++|+.++++|++..++ .+.++..+|.++...|++++|+++|++|+++. . ...
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~-~~~ 216 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA--M-DIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-HTT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--H-HcC
Confidence 3677899999999999999999999999987543 36789999999999999999999999998763 0 001
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----cCCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL-----KEPEEPKSKAHYYDGLVVLARYV---------ANITF 506 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~-----l~P~~~~~~~~~~~~~~~La~~l---------~~~l~ 506 (565)
+......++.++|.++..+|++++|++++++ +.. .+|.. ..++..+|..+ .++++
T Consensus 217 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~-al~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 217 ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQK-AAKVSREKVPDLL-------PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHCGGGH-------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHhhCChhH-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1223345788999999999999999999999 443 22222 33445666665 78999
Q ss_pred HHHhcCC-----CcHHHHHhh-------hhhhHHHhhhhhh-----hhhhhhhhhccchhHHHHHHHHHh
Q 008435 507 LIFATSP-----SIINLLTVS-------NIIDIIYVNCYEL-----KKKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 507 ~Al~l~P-----~~~~~l~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+++++.+ .+....... .+. ..+..+.+. ......+++..+|.+|...++..+
T Consensus 286 ~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~-~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 354 (378)
T 3q15_A 286 EGLDHITARSHKFYKELFLFLQAVYKETVDE-RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354 (378)
T ss_dssp HHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHH
Confidence 9999844 332211111 110 111222111 123456678888888888776443
No 136
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.86 E-value=4e-09 Score=109.52 Aligned_cols=184 Identities=14% Similarity=0.005 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGL-----------------LEEAVE 424 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~-----------------~~eA~~ 424 (565)
.+..+..+|..+...|++++|+.+++++++. +|..+.++..+|.++...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3567889999999999999999999999998 77889999999999999999 999999
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---
Q 008435 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--- 501 (565)
Q Consensus 425 ~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--- 501 (565)
+|++++++..-.. +......++..+|.++...|++++|++++++ +....++.... ......+..+|..+
T Consensus 205 ~~~~al~~~~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~-~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 205 FYQENLKLMRDLG------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQE-RLRIAREFGDR-AAERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHhcCCc-HHHHHHHHHHHHHHHHC
Confidence 9999987530000 1122335788899999999999999999999 44444432221 11223455666665
Q ss_pred ------HHHHHHHHhcCCCc------HH-------HHHhhhhhhHHH---hhhhhhhh-----hhhhhhhccchhHHHHH
Q 008435 502 ------ANITFLIFATSPSI------IN-------LLTVSNIIDIIY---VNCYELKK-----KRFASCFFGFSVLYVML 554 (565)
Q Consensus 502 ------~~~l~~Al~l~P~~------~~-------~l~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~ 554 (565)
.++++++++..|+. .. +....++.+++. +.+.+..+ ....++|.++|.+|..+
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 78888888877642 11 122222222222 22222222 22355899999999887
Q ss_pred HHHHh
Q 008435 555 VAMLK 559 (565)
Q Consensus 555 ~~~~~ 559 (565)
|+-.+
T Consensus 357 g~~~~ 361 (411)
T 4a1s_A 357 GGHER 361 (411)
T ss_dssp TCHHH
T ss_pred ccHHH
Confidence 76543
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.86 E-value=1.3e-08 Score=88.67 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=80.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 397 NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 397 ~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
..+|.++.+++.+|.++...|++++|+++|+++++. +|+++ .++..+|.++..+|++++|+..+++ +
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-a 69 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRR-A 69 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcH-------HHHHHHHHHHHHhcCHHHHHHHHHH-H
Confidence 467899999999999999999999999999999765 35433 4688899999999999999999999 6
Q ss_pred hccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCC
Q 008435 477 NLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPS 514 (565)
Q Consensus 477 ~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~ 514 (565)
...+|+++.... .+|.++ .++++++++++|+
T Consensus 70 l~~~p~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 70 LELDGQSVKAHF-------FLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 668898875433 444443 7889999998887
No 138
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.85 E-value=1.5e-08 Score=81.76 Aligned_cols=84 Identities=27% Similarity=0.398 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
++..++.+|..+...|++++|+.+++++++.+|++..+++.+|.++...|++++|+++|++++++ +|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~----- 77 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA----- 77 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCH-----
Confidence 46778999999999999999999999999999999999999999999999999999999999765 45543
Q ss_pred HHHHHHHHHHHHHHcC
Q 008435 448 LIVASQWSGVACIRQE 463 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g 463 (565)
.++..+|.++..+|
T Consensus 78 --~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 --EAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHhcC
Confidence 35677888887654
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1.5e-08 Score=90.77 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+.++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. +|.+..
T Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-- 116 (166)
T 1a17_A 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-- 116 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH--
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH--
Confidence 3457889999999999999999999999999999999999999999999999999999999999765 354431
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.......+..+...|++++|++.+++.
T Consensus 117 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 117 ---AKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 112234555588899999999999983
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=3.8e-08 Score=86.32 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=90.5
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 396 L~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
...+|+++..++.+|..+...|++++|+++|+++++. +|++. ....++.++|.++...|++++|++.+++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~- 90 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQ----DQAVLHRNRAACHLKLEDYDKAETEASK- 90 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccch----HHHHHHHHHHHHHHHHccHHHHHHHHHH-
Confidence 4567999999999999999999999999999999643 45321 1235688899999999999999999999
Q ss_pred hhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 476 GNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 476 a~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
+...+|+++.........+..++... .++++++++++|+...++....+.
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 66688888654332222222222211 789999999999998877665543
No 141
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=1.8e-08 Score=99.45 Aligned_cols=138 Identities=17% Similarity=0.086 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
.+..+..+|..+...|++++|+.+++++++. +|....++..+|.++...|++++|+++|+++++...-...+
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 3567889999999999999999999999987 57789999999999999999999999999998753000001
Q ss_pred CChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----CCCCchhhhhhhhHHHHHHHHH---------HHHHH
Q 008435 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK----EPEEPKSKAHYYDGLVVLARYV---------ANITF 506 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l----~P~~~~~~~~~~~~~~~La~~l---------~~~l~ 506 (565)
+ .+....++..+|.++...|++++|+++++++.... .++++. ....+..+|..+ .++++
T Consensus 148 ~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 148 D----HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN----VAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp T----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH----HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12334568889999999999999999999944321 122332 123344555554 77888
Q ss_pred HHHhcCC
Q 008435 507 LIFATSP 513 (565)
Q Consensus 507 ~Al~l~P 513 (565)
++++..|
T Consensus 220 ~al~~~~ 226 (311)
T 3nf1_A 220 EILTRAH 226 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887543
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=1.4e-08 Score=94.42 Aligned_cols=104 Identities=11% Similarity=-0.002 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~------~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
.+..+..+|..+...|++++|+.+++++++ .+|..+.++..+|.++...|++++|+++|+++++.. ...+++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL--ASLPED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCcc
Confidence 477889999999999999999999999999 667788999999999999999999999999998763 111211
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
......++.++|.++...|++++|+++++++.
T Consensus 103 ---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 103 ---PLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11234568889999999999999999999944
No 143
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.82 E-value=8e-09 Score=106.13 Aligned_cols=183 Identities=14% Similarity=0.043 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--------------------HHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGL--------------------LEEA 422 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~--------------------~~eA 422 (565)
+..+..+|..+...|++++|+.+++++++..|+. +.++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 5678899999999999999999999999988764 6699999999999999 9999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV- 501 (565)
Q Consensus 423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l- 501 (565)
+++|++++++. -. .. +......++..+|.++...|++++|++++++ +....+..+... .....+..+|..+
T Consensus 167 ~~~~~~al~~~-~~-~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~-~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 167 VDFYEENLSLV-TA-LG----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKA-AERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHH-HH-TT----CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH-HHHHHHHTTCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hh-cc----CcHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhcCCcH-HHHHHHHHHHHHHH
Confidence 99999998763 11 01 1223345678899999999999999999999 443444333211 1223445566555
Q ss_pred --------HHHHHHHHhcCCCc------HH-------HHHhhhhhhHHH---hhhhhhhh-----hhhhhhhccchhHHH
Q 008435 502 --------ANITFLIFATSPSI------IN-------LLTVSNIIDIIY---VNCYELKK-----KRFASCFFGFSVLYV 552 (565)
Q Consensus 502 --------~~~l~~Al~l~P~~------~~-------~l~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~ 552 (565)
.+++++++++.|+. .. +....++.+++. +.+.+..+ .....+|.++|.+|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 78888888776643 11 112222222222 22222222 122668889999998
Q ss_pred HHHHHHh
Q 008435 553 MLVAMLK 559 (565)
Q Consensus 553 ~~~~~~~ 559 (565)
..|+-.+
T Consensus 319 ~~g~~~~ 325 (406)
T 3sf4_A 319 ALGNHDQ 325 (406)
T ss_dssp HHTCHHH
T ss_pred HcCCHHH
Confidence 8876443
No 144
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=3.1e-08 Score=101.29 Aligned_cols=179 Identities=7% Similarity=-0.081 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHCC--CCCchHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhhcCC
Q 008435 368 TPKELIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQ----LQK---GLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g--~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~----~~~---g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
+......++..+...| ++++++.+++++|..+|++..+|+..+.++ ... +++++++++++++++. +
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-----~ 140 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-----D 140 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-----C
Confidence 3444555666666666 666777777777777777777777777776 555 5666777777777543 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH-----HH---HHHHHHH
Q 008435 439 PTEPEAIDLLIVASQWSGVACIRQEKWE--EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR-----YV---ANITFLI 508 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a~~~~g~~~--eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~-----~l---~~~l~~A 508 (565)
|++. .++.+.+.+....|+++ ++++.+++ +...+|.|-.++.+....+..++. .+ .++++++
T Consensus 141 pkny-------~aW~~R~~vl~~l~~~~~~~EL~~~~~-~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a 212 (306)
T 3dra_A 141 PKNH-------HVWSYRKWLVDTFDLHNDAKELSFVDK-VIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK 212 (306)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCTTCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH
T ss_pred CCCH-------HHHHHHHHHHHHhcccChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence 5443 47888999999999998 99999999 666888888665433222222332 12 7899999
Q ss_pred HhcCCCcHHHHHh-------hhhhhHHH----hhhhhhh--hhhhhhhhccchhHHHHHHHHHh
Q 008435 509 FATSPSIINLLTV-------SNIIDIIY----VNCYELK--KKRFASCFFGFSVLYVMLVAMLK 559 (565)
Q Consensus 509 l~l~P~~~~~l~~-------~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
+..+|++..+|.. .++..+.+ +.+.+.. .++-..|+..++.+|.+.++.-|
T Consensus 213 I~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 213 IVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 9999998776632 22222211 2222221 24566777788888876654433
No 145
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=1.3e-08 Score=85.51 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.+.++..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+++|++++++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35578999999999999999999999999999999999999999999999999999999999999875
No 146
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=5.2e-09 Score=86.65 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=77.0
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~-A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.+.+|..+...|++++|+..++++++.+|+++. +++.+|.++...|++++|+++|++++++ +|++. .
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~ 70 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSP-------A 70 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST-------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcH-------H
Confidence 467899999999999999999999999999999 9999999999999999999999999765 46544 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
++.+ +.+++|+..|++ +...+|+++
T Consensus 71 ~~~~--------~~~~~a~~~~~~-~~~~~p~~~ 95 (99)
T 2kc7_A 71 LQAR--------KMVMDILNFYNK-DMYNQLEHH 95 (99)
T ss_dssp HHHH--------HHHHHHHHHHCC-TTHHHHCCS
T ss_pred HHHH--------HHHHHHHHHHHH-HhccCcccc
Confidence 1211 678888999988 555666655
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=3.5e-08 Score=98.80 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
.++..|..+...|++++|+.++++|++..++. +.+++.+|.+|...|++++|+++|++|++.. ...|++.
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~--~~~~~~~-- 192 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL--EALHDNE-- 192 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCCH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcCccc--
Confidence 35668888889999999999999999876655 7799999999999999999999999998652 1223221
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.....+++++|.+|..+|++++|+++++++..
T Consensus 193 -~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 193 -EFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11225788999999999999999999999443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-08 Score=85.20 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=77.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
..|.++.+++.+|.++...|++++|+++|+++++. +|++. .++..+|.++...|++++|++.+++ +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-a~ 77 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDA-------KLYSNRAACYTKLLEFQLALKDCEE-CI 77 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCH-------HHHHHHHHHHTTTTCHHHHHHHHHH-HH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHhccHHHHHHHHHH-HH
Confidence 45788999999999999999999999999999643 45443 4678899999999999999999999 66
Q ss_pred ccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHH
Q 008435 478 LKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINL 518 (565)
Q Consensus 478 ~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~ 518 (565)
..+|.++.... .+|..+ .++++++++.+|+...+
T Consensus 78 ~~~~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 78 QLEPTFIKGYT-------RKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120 (133)
T ss_dssp HHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH
T ss_pred HhCCCchHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHH
Confidence 67888765422 344333 56666666666655443
No 149
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.78 E-value=6.5e-08 Score=93.68 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=91.9
Q ss_pred HHCCCCCchHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008435 380 LSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (565)
Q Consensus 380 ~~~g~~~eAi~~l~~AL~~--------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a 451 (565)
...|+.++|+.++++|++. +|..+.++..+|.++...|++++|+++|+++++...-...++ .+....+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~ 87 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD----HPAVAAT 87 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT----CHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc----chHHHHH
Confidence 4578999999999999983 477899999999999999999999999999987631111111 2233457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcc----CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLK----EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT 511 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l----~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l 511 (565)
+..+|.++...|++++|+++|+++.... .++++.. ...+..+|..+ .++++++++.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV----AKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999944321 2333422 23445666665 7788888887
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.76 E-value=7.7e-08 Score=100.76 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc---CCCCC-hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLA---GHPTE-PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~---~~P~~-~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~ 478 (565)
+..+..+|..+...|++++|+++|++|++...-. .+..+ .+..+....++.++|.++..+|++++|++++++ +..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~-al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE-ALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH-HHH
Confidence 4568999999999999999999999998742000 00000 001123345788999999999999999999999 667
Q ss_pred cCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhh
Q 008435 479 KEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNIIDIIYVNCYELKKKRFASC 543 (565)
Q Consensus 479 l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 543 (565)
++|+++.....+..++..++... +++++++++++|+...++............+.+..++.|.+.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~km 368 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKM 368 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888755332222222222111 889999999999999888877776666565555555555443
No 151
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.75 E-value=1.7e-08 Score=84.74 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=61.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.+|+++.+++.+|.++...|++++|+++|++++++ +|+++ .+++.+|.++...|++++|++.|++ +.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~-al 68 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYV-------GTYYHLGKLYERLDRTDDAIDTYAQ-GI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-------HHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHH-HH
Confidence 58999999999999999999999999999999765 46544 4688899999999999999999999 55
Q ss_pred ccCCCCc
Q 008435 478 LKEPEEP 484 (565)
Q Consensus 478 ~l~P~~~ 484 (565)
.+.|.++
T Consensus 69 ~l~~~~~ 75 (100)
T 3ma5_A 69 EVAREEG 75 (100)
T ss_dssp HHHHHHS
T ss_pred hhhhcCC
Confidence 4554433
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=9.8e-08 Score=79.72 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
.+.+++.+|..+...|++++|+++|+++++. +|.++ .++..+|.++...|++++|++.+++ +...+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCK-TVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHhhccHHHHHHHHHH-HHHhCc
Confidence 4688999999999999999999999999764 35433 4677899999999999999999999 666788
Q ss_pred CCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCcHHHHHhhhh
Q 008435 482 EEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSIINLLTVSNI 524 (565)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~~~~l~~~~~ 524 (565)
.++.....+...+...+..- .++++++++.+|+...++....+
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 87754332211211111111 78899999999998877665543
No 153
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=1e-07 Score=105.65 Aligned_cols=168 Identities=11% Similarity=-0.037 Sum_probs=123.9
Q ss_pred HHHHHHHCCCCC-chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 375 LSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 375 lA~~l~~~g~~~-eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~----------~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
......+.|+++ +|++.++++++.+|++..+|+..|.++...|+ +++|++.++++++. +|++.
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y- 107 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY- 107 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCH-
Confidence 334455667666 57999999999999999999999999999998 99999999999764 57655
Q ss_pred hhhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---HHHHHHHHhcCCCcHHH
Q 008435 444 AIDLLIVASQWSGVACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---ANITFLIFATSPSIINL 518 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g--~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---~~~l~~Al~l~P~~~~~ 518 (565)
.+|++.+.++.+.| ++++|++.+++ +...+|++..++.+....+..++..+ .++++++++.+|++..+
T Consensus 108 ------~aW~hR~w~l~~l~~~~~~~el~~~~k-~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 108 ------GTWHHRCWLLSRLPEPNWARELELCAR-FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp ------HHHHHHHHHHHTCSSCCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred ------HHHHHHHHHHHHcccccHHHHHHHHHH-HHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 57888999999999 77999999999 66689998866443222222222111 78999999999997766
Q ss_pred HHhh---------------------hhhhHHHhhhhhhh--hhhhhhhhccchhHHHHHH
Q 008435 519 LTVS---------------------NIIDIIYVNCYELK--KKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 519 l~~~---------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 555 (565)
|... +..++.++.+.++. ++..+++|+.+|-++...+
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 5332 22233333333322 3568999999998876543
No 154
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=1.1e-07 Score=105.40 Aligned_cols=147 Identities=8% Similarity=-0.078 Sum_probs=118.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC----------CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 008435 362 ISVENLTPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECA 429 (565)
Q Consensus 362 ~~~~~~~~~~l~~lA~~l~~~g~----------~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g--~~~eA~~~~~rA 429 (565)
+...+.+...+..++..+...|+ +++|++.++++++.+|++..+|+..|.++.+.| ++++|+++++++
T Consensus 56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~ 135 (567)
T 1dce_A 56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 33344457777788888877777 899999999999999999999999999999999 779999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH-----------
Q 008435 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL----------- 497 (565)
Q Consensus 430 l~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L----------- 497 (565)
+++ +|++. .||.+.|.+....| .++++++++++ +...+|.|..++.+....+..+
T Consensus 136 l~~-----d~~N~-------~aW~~R~~~l~~l~~~~~~el~~~~~-~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 136 LEA-----DERNF-------HCWDYRRFVAAQAAVAPAEELAFTDS-LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHH-----CTTCH-------HHHHHHHHHHHHTCCCHHHHHHHHHT-TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred Hhh-----ccccc-------cHHHHHHHHHHHcCCChHHHHHHHHH-HHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 765 45543 57888999999999 99999999999 7779999987654433333332
Q ss_pred --HHHH---HHHHHHHHhcCCCcHHHHHh
Q 008435 498 --ARYV---ANITFLIFATSPSIINLLTV 521 (565)
Q Consensus 498 --a~~l---~~~l~~Al~l~P~~~~~l~~ 521 (565)
...+ .+++++|+..+|++..+|..
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 0122 78999999999998877654
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=1.6e-07 Score=95.91 Aligned_cols=171 Identities=9% Similarity=-0.050 Sum_probs=125.4
Q ss_pred HHHHHHHHHHCCCCC-chHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 372 LIALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 372 l~~lA~~l~~~g~~~-eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g--~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
.........+.|.+. +|+.+++++|.++|++..+|+..|.++...| +++++++++++++.. +|++.
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y------ 103 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNY------ 103 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCC------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccH------
Confidence 344455556677665 7999999999999999999999999999999 999999999999764 57665
Q ss_pred HHHHHHHHHHH----HHc---CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH----HHHHHHHHHHhcCCCcHH
Q 008435 449 IVASQWSGVAC----IRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR----YVANITFLIFATSPSIIN 517 (565)
Q Consensus 449 ~~a~~~lG~a~----~~~---g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~----~l~~~l~~Al~l~P~~~~ 517 (565)
.++...+.++ ... ++++++++.+++ +...+|++..++.+....+..++. ...++++++++.||.+-.
T Consensus 104 -~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~-~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 104 -QIWNYRQLIIGQIMELNNNDFDPYREFDILEA-MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp -HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred -HHHHHHHHHHHHHHHhccccCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 4677778877 666 899999999999 666899998664433222222221 117889999999998776
Q ss_pred HHH-------hhhh------hhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435 518 LLT-------VSNI------IDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 518 ~l~-------~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 555 (565)
+|. ..++ .++.++.+.++ ...+..+||..+|-++..++
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 663 2222 23333333332 34668899999999887765
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=1.3e-07 Score=79.60 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=77.0
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 398 KEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 398 ~dP~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
.+|.+ +.+++.+|.++...|++++|+++|+++++. +|.+. .++..+|.++...|++++|+..+++ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-~ 69 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQK-A 69 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHH-H
Confidence 46766 899999999999999999999999999764 34332 3577899999999999999999999 5
Q ss_pred hccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHh
Q 008435 477 NLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTV 521 (565)
Q Consensus 477 ~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~ 521 (565)
...+|.++.... .++..+ .++++++++.+|+...++..
T Consensus 70 ~~~~~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (125)
T 1na0_A 70 LELDPNNAEAWY-------NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116 (125)
T ss_dssp HHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhCCccHHHHH-------HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 567887764322 344333 66777777777776655443
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=1.4e-08 Score=84.39 Aligned_cols=104 Identities=19% Similarity=0.109 Sum_probs=77.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 398 ~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
++|+++.+++.+|.++...|++++|+++|+++++. +|.+. .++..+|.++...|++++|++.+++ +.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~-a~ 67 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEES-------KYWLMKGKALYNLERYEEAVDCYNY-VI 67 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHH-HH
Confidence 47999999999999999999999999999999765 35433 3577899999999999999999999 66
Q ss_pred ccCCC--CchhhhhhhhHHHHH-HHHH--HHHHHHHHhcCCC
Q 008435 478 LKEPE--EPKSKAHYYDGLVVL-ARYV--ANITFLIFATSPS 514 (565)
Q Consensus 478 ~l~P~--~~~~~~~~~~~~~~L-a~~l--~~~l~~Al~l~P~ 514 (565)
..+|+ ++.........+..+ +... .+++++++..+|+
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 67888 664432221121122 2111 5667777776665
No 158
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.73 E-value=2.1e-08 Score=99.28 Aligned_cols=138 Identities=11% Similarity=-0.066 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
...+..+|..+...|++++|+.+++++++. +|..+.++..+|.++...|++++|+++|+++++.. +...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 117 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-----RELN 117 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-----HHhc
Confidence 456789999999999999999999999988 66778999999999999999999999999998764 1100
Q ss_pred hhhhHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435 443 EAIDLLIVASQWSGVACIRQEK--------------------WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV- 501 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~--------------------~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l- 501 (565)
+......++..+|.++...|+ +++|+++++++.. ..+.... .......+..+|..+
T Consensus 118 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~-~~~~~~~-~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 118 -DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS-LVTALGD-RAAQGRAFGNLGNTHY 194 (338)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH-HHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHhcCC-HHHHHHHHHHHHHHHH
Confidence 112234478889999999999 9999999998433 2111000 011222344555544
Q ss_pred --------HHHHHHHHhcCCC
Q 008435 502 --------ANITFLIFATSPS 514 (565)
Q Consensus 502 --------~~~l~~Al~l~P~ 514 (565)
.++++++++..+.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHh
Confidence 6778888876543
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=6.1e-08 Score=82.43 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 396 L~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.+.+|+++.+++.+|.++...|++++|+++|+++++. +|+++ .++..+|.++...|++++|++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~- 71 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANA-------VYFCNRAAAYSKLGNYAGAVQDCER- 71 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhhchHHHHHHHHH-
Confidence 4567888999999999999999999999999999764 34432 4677899999999999999999999
Q ss_pred hhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHH
Q 008435 476 GNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLT 520 (565)
Q Consensus 476 a~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~ 520 (565)
+...+|+++.... .+|..+ .++++++++.+|+...++.
T Consensus 72 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (131)
T 2vyi_A 72 AICIDPAYSKAYG-------RMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118 (131)
T ss_dssp HHHHCTTCHHHHH-------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHhcCccCHHHHH-------HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHH
Confidence 6667888764422 444333 6777888887777655443
No 160
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.2e-08 Score=99.09 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=81.3
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
..+|..+...|++++|+.++++|++..++. ..++..+|.+|...|++++|+++|++|++.. ...+. +..
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~--~~~~~---~~~ 193 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL--EALHD---NEE 193 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSSC---CHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhccc---chh
Confidence 357888888889999999999999965443 4589999999999999999999999998753 11111 222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
....+++++|.+|..+|++++|++++++ +....
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~-al~~~ 226 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNK-AIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence 3345789999999999999999999999 44343
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.72 E-value=9.3e-09 Score=111.41 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=91.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+.+...+.++..+..+|..+.+.|++++|+..+++|++++|+++.+++.+|.+|...|++++|+++|++|+++ +
T Consensus 30 ~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~ 104 (477)
T 1wao_1 30 SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----K 104 (477)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----S
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 34445566679999999999999999999999999999999999999999999999999999999999999765 4
Q ss_pred CCChhhhhHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhhccCCCCc
Q 008435 439 PTEPEAIDLLIVASQWSGVA--CIRQEKWEEGIAHLE-----------RIGNLKEPEEP 484 (565)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~a--~~~~g~~~eAi~~le-----------raa~~l~P~~~ 484 (565)
|++. .++.+++.+ +..+|++++|++.++ + +...+|++.
T Consensus 105 p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-al~~~~~~~ 155 (477)
T 1wao_1 105 PHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE-SMTIEDEYS 155 (477)
T ss_dssp TTCT-------THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS-SCCCCTTCC
T ss_pred CCCH-------HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh-hcccccccc
Confidence 6544 245567777 888999999999999 6 555666554
No 162
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.70 E-value=1.2e-07 Score=102.97 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=116.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHH-------CCCCC-------chHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435 358 KQLKISVENLTPKELIALSVKFLS-------KGDKE-------RPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEA 422 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~-------~g~~~-------eAi~~l~~AL~-~dP~~a~A~~~LG~~~~~~g~~~eA 422 (565)
+.+.+...+.+++.++..|..+.+ .|+.+ +|+..|++|++ .+|++..+|..+|.++...|++++|
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 455566667789999999988876 79987 99999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHH---HHH
Q 008435 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV---LAR 499 (565)
Q Consensus 423 ~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~---La~ 499 (565)
.+.|+++++. +|.++ ..+|..+|.++.+.|++++|++.|++ +....|.+... +...++.. .+.
T Consensus 341 ~~~~~~al~~-----~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~-Al~~~~~~~~~--~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 341 HSIYNRLLAI-----EDIDP------TLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHV--YVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHHHHHS-----SSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCTHH--HHHHHHHHHHHTCC
T ss_pred HHHHHHHhCc-----cccCc------hHHHHHHHHHHHHhcCHHHHHHHHHH-HHhccCCchHH--HHHHHHHHHHHcCC
Confidence 9999999754 45432 13577788899999999999999999 55566654432 22222221 111
Q ss_pred HH--HHHHHHHHhcCCCcHHHHHhh
Q 008435 500 YV--ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 500 ~l--~~~l~~Al~l~P~~~~~l~~~ 522 (565)
.- .+.|+++++.+|+...++...
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~ 431 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHH
Confidence 11 788999999999987766443
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=2.2e-07 Score=92.95 Aligned_cols=134 Identities=10% Similarity=-0.054 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
...+..++..+...|++++|+..++++++..+... ..++.+|.++...|++++|+++|++|++.. +...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~ 149 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-----LTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-----CCSS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----hcCC
Confidence 34567888889999999999999999999988765 457789999999999999999999997532 2111
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--ccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhc
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN--LKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFAT 511 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~--~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l 511 (565)
+......++.++|.+|..+|++++|+++|+++.. ...|++.... ..++.++|..+ .+++++++++
T Consensus 150 -~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~---~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 150 -DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD---VKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch---HHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1222345788999999999999999999999442 3344443211 13455666655 5555666554
No 164
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.68 E-value=1.8e-07 Score=96.12 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-----~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
.+....+|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|+++++++++.. +...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HhcC-
Confidence 35567788899999999999999999999988663 378899999999999999999999998763 1100
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh-hhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYDGLVVLARYV---------ANITFLIFATSP 513 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~-~~~~~~~~~~La~~l---------~~~l~~Al~l~P 513 (565)
+......++.++|.++..+|++++|+++++++.. ..+..... .......+..+|..+ .++++++++..|
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 1112234577899999999999999999999443 32211000 001112233455444 788899988877
Q ss_pred C
Q 008435 514 S 514 (565)
Q Consensus 514 ~ 514 (565)
.
T Consensus 167 ~ 167 (373)
T 1hz4_A 167 S 167 (373)
T ss_dssp T
T ss_pred c
Confidence 5
No 165
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.68 E-value=6.6e-08 Score=82.39 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=67.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 360 ~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+.+...+.++..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++++++
T Consensus 10 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556678999999999999999999999999999999999999999999999999999999999999875
No 166
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=1.8e-07 Score=93.59 Aligned_cols=123 Identities=11% Similarity=-0.036 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~------A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~ 443 (565)
..+...+..+...|++++|+..++++++..+.+.. .+..+|.++...|++++|+++|++|++.. +...
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-----~~~~- 149 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-----LTGI- 149 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC-----CCCS-
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh-----cccc-
Confidence 34556688889999999999999999998887766 34468999999999999999999997642 2111
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--CCCCchhhhhhhhHHHHHHHHH
Q 008435 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK--EPEEPKSKAHYYDGLVVLARYV 501 (565)
Q Consensus 444 ~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l--~P~~~~~~~~~~~~~~~La~~l 501 (565)
+......++.++|.+|..+|++++|+++|+++.... .|.+. ......+.++|..+
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE---EFDVKVRYNHAKAL 206 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch---hHHHHHHHHHHHHH
Confidence 112223468889999999999999999999954311 11222 12334555677665
No 167
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.67 E-value=1.2e-07 Score=102.97 Aligned_cols=143 Identities=13% Similarity=-0.043 Sum_probs=107.0
Q ss_pred hhcCC-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008435 359 QLKIS-VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (565)
Q Consensus 359 ~~~~~-~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~ 436 (565)
.+.+. ..+.++..++..|..+...|++++|+..|+++++.+|+++ .+|..+|.++.+.|++++|.+.|++|++.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Confidence 34443 3455788899999999999999999999999999999996 69999999999999999999999999643
Q ss_pred CCCCChhhhhHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCC
Q 008435 437 GHPTEPEAIDLLIVASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSP 513 (565)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~a-~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P 513 (565)
.|... ..+...+.. +...|++++|++.|++ +...+|+++..+..|.+....+|..- ...|++++..+|
T Consensus 386 -~~~~~-------~~~~~~a~~~~~~~~~~~~A~~~~e~-al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 386 -ARTRH-------HVYVTAALMEYYCSKDKSVAFKIFEL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp -TTCCT-------HHHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred -cCCch-------HHHHHHHHHHHHHcCChhHHHHHHHH-HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 23221 122233333 4469999999999999 66688988866543333222222222 789999999865
Q ss_pred C
Q 008435 514 S 514 (565)
Q Consensus 514 ~ 514 (565)
.
T Consensus 457 ~ 457 (530)
T 2ooe_A 457 L 457 (530)
T ss_dssp S
T ss_pred C
Confidence 4
No 168
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=7.7e-08 Score=97.28 Aligned_cols=109 Identities=10% Similarity=-0.017 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+..+..+|..+.. |++++|+.+|++|+++.|+. +.++..+|.++...|++++|+++|++++++. +.+.
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 189 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-----KEME 189 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHcC
Confidence 4567889999988 99999999999999998765 7899999999999999999999999998763 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.......++..+|.++..+|++++|+.+|++ +. .+|.+...
T Consensus 190 -~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~-al-~~p~~~~~ 230 (307)
T 2ifu_A 190 -NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE-SY-SIPGFSGS 230 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HT-TSTTSTTS
T ss_pred -ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH-Hh-CCCCCCCC
Confidence 1112223677799999999999999999999 56 88887643
No 169
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.67 E-value=3.6e-07 Score=98.25 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAI 430 (565)
Q Consensus 368 ~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl 430 (565)
+++.++.+|..+.. .+++++|+.+|+++++. +++.+++.||.+|.. .+++++|+++|++|+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 44555555555555 55555555555555544 455555555555555 555555555555554
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=1.5e-07 Score=81.04 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 404 ~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
++++.+|.++...|++++|++.|+++++. +|+++ ....+++++|.++...|++++|++.|++ +...+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~-~~~~~p~~ 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRD-LVSRYPTH 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHCCCC
Confidence 46789999999999999999999999765 35433 1124678899999999999999999999 66688887
Q ss_pred chhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhhhh
Q 008435 484 PKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSNII 525 (565)
Q Consensus 484 ~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~~~ 525 (565)
+.. ..++..+|.++ .++++++++.+|+.........+.
T Consensus 73 ~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 73 DKA----AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp TTH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 421 12233455444 789999999999987765544443
No 171
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.65 E-value=1.2e-07 Score=101.57 Aligned_cols=156 Identities=9% Similarity=0.010 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCC---CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 369 PKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQK----GLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~----g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+..++.+|..+...| ++++|+.+|+++.+.+|.++.+++.+|.+|... +++++|+++|+++. |.+
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--------~g~ 247 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--------PGY 247 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--------GGS
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--------CCC
Confidence 447888888888888 888999999999999999999889999998655 68899999999983 222
Q ss_pred hhhhhHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-------------HHHH
Q 008435 442 PEAIDLLIVASQWSGVA-C--IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV-------------ANIT 505 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a-~--~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l-------------~~~l 505 (565)
+ .+++++|.+ + ...|++++|+++|++++. ..++.. ...+|..+ .++|
T Consensus 248 ~-------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g~~~A-------~~~Lg~~y~~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 248 P-------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---ADQPRA-------ELLLGKLYYEGKWVPADAKAAEAHF 310 (452)
T ss_dssp T-------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---TTCHHH-------HHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred H-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---CCCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 2 467778887 4 468889999999988543 234432 22444443 6778
Q ss_pred HHHHhcCCCcHHHHHhhh-----------hhhHHHhhhhhhhhhhhhhhhccchhHHH
Q 008435 506 FLIFATSPSIINLLTVSN-----------IIDIIYVNCYELKKKRFASCFFGFSVLYV 552 (565)
Q Consensus 506 ~~Al~l~P~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (565)
+++. |++..+..... +....+..+..+.+.-+++|+++||..|.
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 8877 65554432221 22234444455666678888999998886
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=4.8e-08 Score=83.87 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+.++..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44578899999999999999999999999999999999999999999999999999999999997753
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=2.5e-07 Score=78.67 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
|+.+.+++.+|.++...|++++|+++|+++++. +|.++ .++..+|.++...|++++|+.++++ +...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-~~~~ 67 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEK-AIEV 67 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHhccHHHHHHHHHH-HHhh
Confidence 345788999999999999999999999999765 34432 4677899999999999999999999 5556
Q ss_pred CCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435 480 EPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSN 523 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~ 523 (565)
+|+++........++..+|..+ .++++++++.+|+ ........
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~ 119 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ 119 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 6654222111123444555555 7888999998885 44444443
No 174
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.63 E-value=5.7e-07 Score=96.70 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHH----CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAIS 431 (565)
Q Consensus 368 ~~~~l~~lA~~l~~----~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~ 431 (565)
+++.++.+|..+.. .+++++|+.+|++|.+. +++.+++.||.+|.. .+++++|+++|++|++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45666677776666 66677777777776654 466777777777766 6677777777777644
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.61 E-value=3.1e-08 Score=91.19 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=67.8
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHCCCCC----------chHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------
Q 008435 358 KQLKISVENLTPKELIALSVKFLSKGDKE----------RPIPLLQLALNKEPDNINALILMGQTQLQKG---------- 417 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~----------eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---------- 417 (565)
+.+.+...|.+++.++..|..+.+.++++ +|+..|++||++||+++++|+.+|.+|...|
T Consensus 25 ~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~ 104 (158)
T 1zu2_A 25 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 104 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhh
Confidence 35666777889999999999999988765 9999999999999999999999999999875
Q ss_pred -CHHHHHHHHHHHHHh
Q 008435 418 -LLEEAVEYLECAISK 432 (565)
Q Consensus 418 -~~~eA~~~~~rAl~l 432 (565)
++++|+++|++|+++
T Consensus 105 g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 899999999999775
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=1.7e-06 Score=89.21 Aligned_cols=122 Identities=10% Similarity=-0.046 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc
Q 008435 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~--~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~ 462 (565)
+++++.++++++..+|++..+|+..+.++...|+ +++++++++++++. +|++. .+|.+.+.+....
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy-------~AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNF-------HCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHh
Confidence 5678888888888888888888888888888884 78888888888654 45543 4677788888888
Q ss_pred CC-HHHHHHHHHHHhhccCCCCchhhhhhhhHHHHH--------------HHHH--HHHHHHHHhcCCCcHHHH
Q 008435 463 EK-WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL--------------ARYV--ANITFLIFATSPSIINLL 519 (565)
Q Consensus 463 g~-~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~L--------------a~~l--~~~l~~Al~l~P~~~~~l 519 (565)
|+ ++++++++++ +...+|.|..++.+....+..+ +... .+++++++..+|++..+|
T Consensus 158 ~~~~~eel~~~~~-~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 158 AVAPAEELAFTDS-LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp TCCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 87 5888888888 5567888876654433333333 1111 788888888888877665
No 177
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.60 E-value=5.3e-07 Score=92.61 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE--------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d--------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
...++.+|..+...|++++|+.+++++++.. |....++..+|.++...|++++|+++++++++.. +.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~ 167 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-----SS 167 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hc
Confidence 3457789999999999999999999999975 4567788999999999999999999999998753 21
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
.. ... ...++..+|.++...|++++|.++++++.
T Consensus 168 ~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 168 YQ-PQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp SC-GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cC-cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 111 22467789999999999999999999944
No 178
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.59 E-value=4e-07 Score=94.74 Aligned_cols=143 Identities=18% Similarity=0.142 Sum_probs=100.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAIS 431 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g----~~~eA~~~~~rAl~ 431 (565)
..+..|.+.++.++|.+|..++..++ .++|+.+|++|+++||+++.+|..++.+|.... ......+..+++++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 34557778899999999999987654 578999999999999999999999999986322 11222233333332
Q ss_pred hh-hhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------
Q 008435 432 KL-FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV--------- 501 (565)
Q Consensus 432 l~-~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l--------- 501 (565)
.. .+..+|.++ .++..++..+...|++++|+.++++ +..++|. . . ++..+|..+
T Consensus 266 a~~a~~~~~~~a-------~~~~alal~~l~~gd~d~A~~~l~r-Al~Ln~s-~--~-----a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 266 NIVTLPELNNLS-------IIYQIKAVSALVKGKTDESYQAINT-GIDLEMS-W--L-----NYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp HHHTCGGGTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCC-H--H-----HHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccCCcCH-------HHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCC-H--H-----HHHHHHHHHHHCCCHHHH
Confidence 11 122334333 4566678888888999999999999 6667753 2 1 122444433
Q ss_pred HHHHHHHHhcCCCcHH
Q 008435 502 ANITFLIFATSPSIIN 517 (565)
Q Consensus 502 ~~~l~~Al~l~P~~~~ 517 (565)
++.|++|+.++|....
T Consensus 330 ~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 330 ADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHhcCCCcCh
Confidence 8999999999998764
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=2.1e-07 Score=81.74 Aligned_cols=102 Identities=13% Similarity=-0.024 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
...+..+|..+...|++++|+.+++++++..++. ..++..+|.++...|++++|+++++++++.. -. ..
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--~~-- 123 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QE--LK-- 123 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH--TT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HH--cc--
Confidence 4568889999999999999999999999987664 7899999999999999999999999998763 00 00
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
+......++..+|.++...|++++|+++++++.
T Consensus 124 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 124 -DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 122334567889999999999999999999943
No 180
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.56 E-value=3e-07 Score=76.94 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHCCC---CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 365 ENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~---~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
.+.+++.+...|..++..++ .++|..++++||+.||+++++++.+|..+++.|+|++|+++|+++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35679999999999976554 78999999999999999999999999999999999999999999954
No 181
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=3.7e-07 Score=87.21 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHCC----CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 368 TPKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g----~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
+++.++.+|..+.. + ++++|+.+|++|+ +++++.+++.||.+|.. .+++++|+++|++|++. ++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~ 120 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE 120 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC
Confidence 57889999999887 6 8999999999995 56899999999999998 88999999999999542 12
Q ss_pred CChhhhhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCch
Q 008435 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~a~~~----~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
. +....+++++|.+|.. .+++++|+++|++++. . |.++.
T Consensus 121 ~-----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~-~~~~~ 163 (212)
T 3rjv_A 121 S-----DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-L-SRTGY 163 (212)
T ss_dssp S-----HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-T-SCTTH
T ss_pred C-----cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-c-CCCHH
Confidence 1 1223578899999999 8999999999999554 3 44553
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.54 E-value=8.4e-08 Score=98.93 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.++.+|..+...|++++|+.+++++++.+|+++.+|+.+|.+|...|++++|+++|+++++ .+|++. .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-----l~p~~~-------~ 299 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-----YAPDDK-------A 299 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCH-------H
Confidence 6789999999999999999999999999999999999999999999999999999999954 345543 3
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 451 ASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 451 a~~~lG~a-~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
++..++.+ ....++.+++.+.|++ +...+|+++.
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~-~l~~~p~~~~ 334 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKG-IFKGKDEGGA 334 (338)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCCCC
Confidence 45567776 4567788899999999 6667777653
No 183
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=2.6e-07 Score=92.46 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 008435 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (565)
Q Consensus 400 P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l 479 (565)
|+++.+++.+|..+...|++++|+++|++|++. +|+++ .++.++|.++..+|++++|++.+++ +..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~-al~~ 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRR-ALEL 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HTTS
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHH-HHHh
Confidence 678999999999999999999999999999765 46543 4678899999999999999999999 6778
Q ss_pred CCCCchhhhhhhhHHHHHHHHH--HHHHHHHHhcCCCc
Q 008435 480 EPEEPKSKAHYYDGLVVLARYV--ANITFLIFATSPSI 515 (565)
Q Consensus 480 ~P~~~~~~~~~~~~~~~La~~l--~~~l~~Al~l~P~~ 515 (565)
+|+++........++..++..- ++.++++++++|+.
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9988754332211221122111 78899999999854
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.53 E-value=3.5e-07 Score=73.50 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~ 480 (565)
+++.+++.+|.++...|++++|+++|+++++. +|.++ .++..+|.++...|++++|++++++ +...+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~ 73 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQK-ALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHH-HHhcC
Confidence 56899999999999999999999999999765 35433 4678899999999999999999999 66688
Q ss_pred CCCchh
Q 008435 481 PEEPKS 486 (565)
Q Consensus 481 P~~~~~ 486 (565)
|+++..
T Consensus 74 p~~~~~ 79 (91)
T 1na3_A 74 PNNAEA 79 (91)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 888754
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.53 E-value=3.4e-07 Score=99.57 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
....+.+..+..+|++++|+.+++++|++ .|++ +..+.+||.+|..+|+|++|+.+|+++++.......|+.
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556677788899999999999999984 3455 678999999999999999999999999887533444543
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----ccCCCCchh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN----LKEPEEPKS 486 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~----~l~P~~~~~ 486 (565)
+ .....+.++|.+|..+|++++|+.+|+++.. .+.|++|..
T Consensus 390 p----~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 390 A----QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 3 2335688899999999999999999999543 356777754
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=1.5e-06 Score=89.68 Aligned_cols=144 Identities=8% Similarity=0.009 Sum_probs=115.4
Q ss_pred CCCCHHHHHHHHHHHHHCCC--CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKGD--KERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~--~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~-~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
.+.+.......+..+...|+ +++++.+++++++.||.|..||...+.+....|+ +++++++++++++. +|.|
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-----~p~N 178 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----NFSN 178 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CSCC
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----CCCC
Confidence 45678889999999988884 7899999999999999999999999999999998 69999999999875 4655
Q ss_pred hhhhhHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHH---------
Q 008435 442 PEAIDLLIVASQWSGVACIRQ--------------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA--------- 498 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~--------------g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La--------- 498 (565)
. .|+.+.+.++... +.++++++++++ +...+|+|...+. |..+++.-+
T Consensus 179 ~-------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~-ai~~~P~d~SaW~-Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 179 Y-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN-AFFTDPNDQSAWF-YHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp H-------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH-HHHHSTTCHHHHH-HHHHHHHSSSCGGGCCHH
T ss_pred H-------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH-HHHhCCCCHHHHH-HHHHHHHhccCccccchH
Confidence 4 4677788887776 568999999999 6779999997654 233332222
Q ss_pred --HHH---HHHHHHHHhcCCCcHHHHHhh
Q 008435 499 --RYV---ANITFLIFATSPSIINLLTVS 522 (565)
Q Consensus 499 --~~l---~~~l~~Al~l~P~~~~~l~~~ 522 (565)
..+ +++++++++++|+.+-++...
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 223 899999999999987655444
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=6.1e-07 Score=74.76 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
++++++.+|.++...|++++|+++|+++++. +|.++ .+++++|.++..+|++++|++.+++ +..++|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNP-------VGYSNKAMALIKLGEYTQAIQMCQQ-GLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-HHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCC
Confidence 5789999999999999999999999999765 45543 4688899999999999999999999 667888
Q ss_pred CCc
Q 008435 482 EEP 484 (565)
Q Consensus 482 ~~~ 484 (565)
++.
T Consensus 70 ~~~ 72 (111)
T 2l6j_A 70 TAE 72 (111)
T ss_dssp STT
T ss_pred Ccc
Confidence 874
No 188
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=3.9e-07 Score=84.37 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK---EP----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~---dP----~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
+..++.+|..+...|++++|+.+++++++. .+ ..+.++..+|.++...|++++|+++++++++.. ....
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~- 141 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA---QQAD- 141 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---Hhcc-
Confidence 567889999999999999999999999998 44 346789999999999999999999999998753 0011
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
+......++.++|.++...|++++|+++++++.
T Consensus 142 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 142 --DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 112223457889999999999999999999944
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=5.5e-06 Score=85.89 Aligned_cols=162 Identities=7% Similarity=-0.077 Sum_probs=118.6
Q ss_pred HCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (565)
Q Consensus 381 ~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g-~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~ 459 (565)
..+..++|+++++++|.+||++..+|+..|.++...| .++++++.+++++. .+|++. .++...+.++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-----~nPKny-------~aW~hR~wlL 133 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-----QNLKSY-------QVWHHRLLLL 133 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----TTCCCH-------HHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----hCCCcH-------HHHHHHHHHH
Confidence 3445568999999999999999999999999999999 59999999999964 467765 4788889999
Q ss_pred HHc-C-CHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH----------HHHHHHHHHHhcCCCcHHHHHhh-----
Q 008435 460 IRQ-E-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR----------YVANITFLIFATSPSIINLLTVS----- 522 (565)
Q Consensus 460 ~~~-g-~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~----------~l~~~l~~Al~l~P~~~~~l~~~----- 522 (565)
... + +++++++.+++ +...+|++..++.+....+..++. ...++++++++.||++-.+|..-
T Consensus 134 ~~l~~~~~~~EL~~~~k-~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHG-SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHH-HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 887 8 99999999999 667899988665433222222332 11788999999999877665322
Q ss_pred --hh-------hhHHHhhhhhh--hhhhhhhhhccchhHHHHHH
Q 008435 523 --NI-------IDIIYVNCYEL--KKKRFASCFFGFSVLYVMLV 555 (565)
Q Consensus 523 --~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 555 (565)
.+ .++.++.+.++ ......+||..+.-++...+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 11 22333333222 23557889988777766544
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.9e-07 Score=92.72 Aligned_cols=105 Identities=19% Similarity=0.042 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~-a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
..+.+|..+++.|++++|+.+|++++... |.+ ..+++.+|.++...|++++|+.+|+++++ + |.++ ...
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g-~~~P---~~~ 207 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----S-PAGE---ACA 207 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----S-TTTT---TTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----C-CCCc---ccc
Confidence 78999999999999999999999887753 322 46999999999999999999999999952 1 2111 112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
..+++++|.++.++|+.+||++.|++ +...+|+ +..
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~-a~a~~P~-~~~ 243 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEW-LQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSCC-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCc-HHH
Confidence 35788899999999999999999999 6668888 543
No 191
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=1.3e-06 Score=90.60 Aligned_cols=142 Identities=6% Similarity=-0.131 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 366 NLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQK-G-LLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g-~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~-g-~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+.+.......+..+...| ++++++.+++++|..+|++..+|+..+.++... + +++++++++++++ ..+|++.
T Consensus 85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L-----~~dpkNy 159 (349)
T 3q7a_A 85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL-----LPDPKNY 159 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT-----SSCTTCH
T ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-----HhCCCCH
Confidence 445666777888888888 599999999999999999999999999999998 8 8999999999994 4567655
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhccCCCCchhhhhhhhHHHHHHH------HH---HHHH
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWE--------EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAR------YV---ANIT 505 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~--------eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~------~l---~~~l 505 (565)
.++...+.+..+.|+++ ++++.+++ +...+|.|..++.+....+..++. .+ .+++
T Consensus 160 -------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k-~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~ 231 (349)
T 3q7a_A 160 -------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE-MLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI 231 (349)
T ss_dssp -------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhccccccchhhHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 57888889988888888 99999999 666899988665433222222322 12 8899
Q ss_pred HHHHhcCCCcHHHHH
Q 008435 506 FLIFATSPSIINLLT 520 (565)
Q Consensus 506 ~~Al~l~P~~~~~l~ 520 (565)
++++..+|++..+|.
T Consensus 232 ~~aI~~~P~n~SaW~ 246 (349)
T 3q7a_A 232 LKSIHLIPHNVSAWN 246 (349)
T ss_dssp HHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCHHHHH
Confidence 999999999877663
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.34 E-value=3e-06 Score=90.72 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHH----HHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCC
Q 008435 368 TPKELIALSVKFLSKGDKERPIPL----LQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~----l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
+++..+.+|..+...+.+++++.. ++.+...+|. +++.||.+|...| ++++|+++|+++++. ++.
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----g~~ 211 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR-----GTV 211 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----TCS
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----CCH
Confidence 466788999999998877766555 5555555555 9999999999999 999999999999654 233
Q ss_pred ChhhhhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH------------HHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQ----EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV------------ANI 504 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~----g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l------------~~~ 504 (565)
++ ..++++|.+|... +++++|+++|++++ |.++.... .+|..+ .++
T Consensus 212 ~a-------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~-------~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 212 TA-------QRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV-------SLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp CH-------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH-------HHHHHHHHSGGGCCHHHHHHH
T ss_pred HH-------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH-------HHHHHHHhCCCCCCHHHHHHH
Confidence 22 2357799999665 79999999999954 67765422 445441 789
Q ss_pred HHHHHhcCCCcHHHHHhhh-----------hhhHHHhhhhhhhhhhhhhhhccchhHHHH
Q 008435 505 TFLIFATSPSIINLLTVSN-----------IIDIIYVNCYELKKKRFASCFFGFSVLYVM 553 (565)
Q Consensus 505 l~~Al~l~P~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (565)
|+++.+.+ +..++.... +....+..+..+. ..+++|+++||++|..
T Consensus 274 ~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 274 LDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHC
Confidence 99988765 333222111 2233444444455 7799999999999875
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.32 E-value=1.8e-06 Score=92.41 Aligned_cols=108 Identities=13% Similarity=-0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+........|++++|+.+++++|++ .|+| +..+.+||.+|..+|+|++|+++|+++++.......|+.+
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--- 379 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL--- 379 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH---
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh---
Confidence 3344444568999999999999984 4666 5678999999999999999999999998875333444433
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----ccCCCCch
Q 008435 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGN----LKEPEEPK 485 (565)
Q Consensus 446 ~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~----~l~P~~~~ 485 (565)
.....+.++|.+|..+|+++||+.+|+++.. .+.|++|.
T Consensus 380 -~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 380 -NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred -HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 2234688899999999999999999999443 23555553
No 194
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.29 E-value=2.7e-06 Score=90.92 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
.+.+.....+..+|++++|+..++++++. .|+| +..+.++|.+|..+|+|++|+++++++++.......|+.
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 45556666777899999999999999974 4555 678999999999999999999999999887533334443
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----ccCCCCch
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN----LKEPEEPK 485 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~----~l~P~~~~ 485 (565)
+ .....+.++|.+|..+|++++|+.+|+++.. .+.|++|.
T Consensus 368 p----~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 368 P----VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred h----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 3 2334688899999999999999999999443 24566654
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.28 E-value=3.5e-06 Score=70.35 Aligned_cols=74 Identities=14% Similarity=-0.010 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 399 EPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 399 dP~~a~A~~~LG~~~~~~g~---~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
+|++++++..+|.+++..++ .++|..++++|+++ +|+++ .+...+|..+++.|+|++|+.++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~-------rA~~~lg~~~~~~g~y~~Ai~~w~~- 68 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNE-------AALSLIANDHFISFRFQEAIDTWVL- 68 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 79999999999999987766 69999999999764 57665 5677899999999999999999999
Q ss_pred hhccCCCCch
Q 008435 476 GNLKEPEEPK 485 (565)
Q Consensus 476 a~~l~P~~~~ 485 (565)
+...+|.++.
T Consensus 69 ~l~~~p~~~~ 78 (93)
T 3bee_A 69 LLDSNDPNLD 78 (93)
T ss_dssp HHTCCCTTCC
T ss_pred HHhhCCCCcc
Confidence 5667777553
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.26 E-value=1.5e-06 Score=71.39 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV-ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 406 ~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~-a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.+..|.++...|++++|++.|+++++. +|+++ . +++.+|.++...|++++|+++|++ +..++|+++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT-----EPVGK-------DEAYYLMGNAYRKLGDWQKALNNYQS-AIELNPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTH-------HHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcH
Confidence 367899999999999999999999765 45543 3 678899999999999999999999 667899988
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhcCCC
Q 008435 485 KSKAHYYDGLVVLARYVANITFLIFATSPS 514 (565)
Q Consensus 485 ~~~~~~~~~~~~La~~l~~~l~~Al~l~P~ 514 (565)
....+ . .++.. .++++++...+|+
T Consensus 70 ~~~~~---~--~~~~a-~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 70 ALQAR---K--MVMDI-LNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHH---H--HHHHH-HHHHCCTTHHHHC
T ss_pred HHHHH---H--HHHHH-HHHHHHHhccCcc
Confidence 64311 0 11111 4556666666654
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=5.7e-06 Score=86.26 Aligned_cols=143 Identities=10% Similarity=0.111 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a-----------------~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
|...++.|..+...|++++|++.|+++++.+|+.. .++..+|.+|...|++++|+++|+++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44578899999999999999999999999998864 4689999999999999999999999877
Q ss_pred hh-----------------hhcCCCCChhh-hh----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 432 KL-----------------FLAGHPTEPEA-ID----------------LLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 432 l~-----------------~l~~~P~~~~~-~~----------------~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.. .+...+++.+. .. .....+..+|.++...|++++|++.++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 53 01111221110 00 0012456799999999999999999998543
Q ss_pred ccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCC
Q 008435 478 LKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSP 513 (565)
Q Consensus 478 ~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P 513 (565)
.....+.. ......+..++..+ ..++++++...+
T Consensus 164 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 164 EFKKLDDK--PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTSSCS--THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccc--hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 32222211 12234445556555 567777776543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=3.3e-06 Score=75.29 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=74.8
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~----~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
+|..+...+..++|+.+|++|.+. +++.+++.||.+|.. .+++++|+++|++|.+.. + ..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~-------~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------D-------QD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C-------HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-------C-------HH
Confidence 888887778888899999999987 899999999999998 889999999999996531 1 24
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 008435 451 ASQWSGVACIR----QEKWEEGIAHLERIGN 477 (565)
Q Consensus 451 a~~~lG~a~~~----~g~~~eAi~~leraa~ 477 (565)
+.+++|.+|.. .+++++|+++|++++.
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 67889999999 8999999999999555
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=7e-06 Score=69.47 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-------P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~ 438 (565)
.+++++++.+|..++..|++++|+..|++|++.. +..+.++..+|.++.+.|++++|+.++++|+++ +
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~ 76 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----D 76 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C
Confidence 4689999999999999999999999999999963 456899999999999999999999999999764 5
Q ss_pred CCCh
Q 008435 439 PTEP 442 (565)
Q Consensus 439 P~~~ 442 (565)
|++.
T Consensus 77 P~~~ 80 (104)
T 2v5f_A 77 PEHQ 80 (104)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 7654
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.07 E-value=1.8e-05 Score=79.49 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHH-----CCCC------CchHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLS-----KGDK------ERPIPLLQLALNKEPD--NINALILMGQTQLQK-----GLLEEAVEYLECA 429 (565)
Q Consensus 368 ~~~~l~~lA~~l~~-----~g~~------~eAi~~l~~AL~~dP~--~a~A~~~LG~~~~~~-----g~~~eA~~~~~rA 429 (565)
+++.++=.|..... .|++ .+|...+++|+++||+ +..+|..+|.+|.+. |+.++|.++|+||
T Consensus 151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 56777666665533 2433 4689999999999999 677999999999996 9999999999999
Q ss_pred HHhhhhcCCCCC-hhhhhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhccCCCC-ch
Q 008435 430 ISKLFLAGHPTE-PEAIDLLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEE-PK 485 (565)
Q Consensus 430 l~l~~l~~~P~~-~~~~~~~~~a~~~lG~a~~~-~g~~~eAi~~leraa~~l~P~~-~~ 485 (565)
+++ +|+. . .+++..|..++. .|++++|.+++++ +...+|+. |.
T Consensus 231 L~L-----nP~~~i-------d~~v~YA~~l~~~~gd~~~a~~~L~k-AL~a~p~~~P~ 276 (301)
T 3u64_A 231 TRY-----CSAHDP-------DHHITYADALCIPLNNRAGFDEALDR-ALAIDPESVPH 276 (301)
T ss_dssp HHH-----CCTTCS-------HHHHHHHHHTTTTTTCHHHHHHHHHH-HHHCCGGGCSS
T ss_pred HHh-----CCCCCc-------hHHHHHHHHHHHhcCCHHHHHHHHHH-HHcCCCCCCCC
Confidence 775 4642 3 345667888877 5999999999999 66677664 53
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=2.6e-05 Score=71.04 Aligned_cols=89 Identities=10% Similarity=0.033 Sum_probs=74.3
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g---~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g 463 (565)
.+.+.|++.++.++.+.++.+.+|.++.+.+ +.++|+..++..++. + .++.....+|++|.+++++|
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~-----~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----G-----SKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----S-----CHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-----CccchHHHHHHHHHHHHHcc
Confidence 4567788888999999999999999999988 667999999999753 1 02233467899999999999
Q ss_pred CHHHHHHHHHHHhhccCCCCchh
Q 008435 464 KWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 464 ~~~eAi~~leraa~~l~P~~~~~ 486 (565)
+|++|+.++++ +.+.+|++.+.
T Consensus 86 ~Y~~A~~y~~~-lL~ieP~n~QA 107 (152)
T 1pc2_A 86 EYEKALKYVRG-LLQTEPQNNQA 107 (152)
T ss_dssp CHHHHHHHHHH-HHHHCTTCHHH
T ss_pred CHHHHHHHHHH-HHhcCCCCHHH
Confidence 99999999999 77789988754
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.03 E-value=1.4e-05 Score=67.51 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
+++-++.+|..++..|+|++|+.+|++|++.. ..++. . ......++..+|.++.++|++++|+.++++ +..++|
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~--~~~~~-~--~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~-al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQL--DEGEI-S--TIDKVSVLDYLSYAVYQQGDLDKALLLTKK-LLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCC-C--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhh--hccCC-C--cccHHHHHHHHHHHHHHccCHHHHHHHHHH-HHhcCC
Confidence 46678999999999999999999999998763 11110 0 111234678899999999999999999999 667899
Q ss_pred CCchh
Q 008435 482 EEPKS 486 (565)
Q Consensus 482 ~~~~~ 486 (565)
+++..
T Consensus 78 ~~~~~ 82 (104)
T 2v5f_A 78 EHQRA 82 (104)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 98754
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=1.8e-05 Score=85.86 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
+..+..+|..+..+|++++|+.+++++|+. -|++ +..+++||.+|..+|++++|+.+|++|+++......|+
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 566788999999999999999999999974 3555 66899999999999999999999999998864445565
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
.+. .......++.++..+|++++|...|+++
T Consensus 431 Hp~----~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 431 HPI----TKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp SHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 2234567999999999999999999983
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.92 E-value=8.5e-05 Score=88.32 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC---
Q 008435 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP--- 439 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P--- 439 (565)
.....+++.++++|.++...|++++|+..|.+| +++.+|..+|.++.+.|++++|+++|+.|.+.. .++
T Consensus 1099 Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Id 1170 (1630)
T 1xi4_A 1099 AERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVE 1170 (1630)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cccccc
Confidence 333456889999999999999999999999887 999999999999999999999999999986542 111
Q ss_pred ----------CChhhhhHH-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 440 ----------TEPEAIDLL-----IVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 440 ----------~~~~~~~~~-----~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
+..+....+ ...+..+|..+...|+|++|+.+|++
T Consensus 1171 t~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 000000000 11355688888888888888888888
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=3e-05 Score=68.96 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=64.6
Q ss_pred CCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH-
Q 008435 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR- 461 (565)
Q Consensus 383 g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~- 461 (565)
+++++|+.+|+++.+.+.. .+. +|.+|...+..++|+++|++|.+.. + ..+.+++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~-------~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACELN-------S-------GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------C-------HHHHHHHHHHHHcC
Confidence 3678899999999998744 444 9999999999999999999996531 1 2478889999999
Q ss_pred ---cCCHHHHHHHHHHHhh
Q 008435 462 ---QEKWEEGIAHLERIGN 477 (565)
Q Consensus 462 ---~g~~~eAi~~leraa~ 477 (565)
.+++++|+++|++++.
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHc
Confidence 8999999999999665
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.86 E-value=9e-05 Score=75.46 Aligned_cols=136 Identities=11% Similarity=-0.010 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC------CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP------~~a~A~~~LG~~~~~~g--~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
.+.....+..++..|+.++|.+.+++..+.+| +.......-|++....| ++++|...|+++.+. .|+
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----~p~ 210 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----FPT 210 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----SCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----CCC
Confidence 44444555555555555555555555555555 22222222243344444 555555555554211 111
Q ss_pred ChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----------CCCCchhhhhhhhHHHHHHHHH----HHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK----------EPEEPKSKAHYYDGLVVLARYV----ANITF 506 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l----------~P~~~~~~~~~~~~~~~La~~l----~~~l~ 506 (565)
......+ +. ++.++|++++|.+.+++ +..+ +|+|+..... .+.++... .++++
T Consensus 211 -----~~~~~lL--ln-~~~~~g~~~eAe~~L~~-l~~~~p~~~~k~~~~p~~~~~LaN----~i~l~~~lgk~a~~l~~ 277 (310)
T 3mv2_B 211 -----WKTQLGL--LN-LHLQQRNIAEAQGIVEL-LLSDYYSVEQKENAVLYKPTFLAN----QITLALMQGLDTEDLTN 277 (310)
T ss_dssp -----HHHHHHH--HH-HHHHHTCHHHHHHHHHH-HHSHHHHTTTCHHHHSSHHHHHHH----HHHHHHHTTCTTHHHHH
T ss_pred -----cccHHHH--HH-HHHHcCCHHHHHHHHHH-HHHhcccccccccCCCCCHHHHHH----HHHHHHHhChHHHHHHH
Confidence 0000112 22 89999999999999987 5544 3666643211 11122222 78999
Q ss_pred HHHhcCCCcHHHHHhh
Q 008435 507 LIFATSPSIINLLTVS 522 (565)
Q Consensus 507 ~Al~l~P~~~~~l~~~ 522 (565)
++.+.+|++.-+..-.
T Consensus 278 qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 278 QLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHTTCCCHHHHHHH
T ss_pred HHHHhCCCChHHHHHH
Confidence 9999999987665443
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.85 E-value=0.00017 Score=73.43 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP--~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~ 445 (565)
+...++.+|.++...|++++|++.+++.+..+| ++.+++..+++++...|+.++|.+.+++..+. +|+.. ..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~-~~ 172 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTV-SG 172 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHH-HH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Ccccc-cc
Confidence 466678999999999999999999999999997 99999999999999999999999999988543 22000 00
Q ss_pred hHHHHHHHHHHH--HHHHcC--CHHHHHHHHHHHhhccCCC
Q 008435 446 DLLIVASQWSGV--ACIRQE--KWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 446 ~~~~~a~~~lG~--a~~~~g--~~~eAi~~leraa~~l~P~ 482 (565)
+. .....++. +....| ++++|...|++ +....|+
T Consensus 173 ~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~E-l~~~~p~ 210 (310)
T 3mv2_B 173 DN--EMILNLAESYIKFATNKETATSNFYYYEE-LSQTFPT 210 (310)
T ss_dssp HH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHH-HHTTSCS
T ss_pred ch--HHHHHHHHHHHHHHhCCccHHHHHHHHHH-HHHhCCC
Confidence 01 12233433 355555 99999999999 4544444
No 208
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.75 E-value=0.00037 Score=82.95 Aligned_cols=88 Identities=11% Similarity=0.145 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---------------------------CHHHHHHHHHHHHHcCCH
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------------------NINALILMGQTQLQKGLL 419 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---------------------------~a~A~~~LG~~~~~~g~~ 419 (565)
.+++.+.+.|..+.+.|++++|+++|+.|.+.+++ +...+..+|..+...|++
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 57888999999999999999999999998876644 223456677777777777
Q ss_pred HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 420 EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 420 ~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
++|+.+|.+| ..|..+|.++.++|++++|++.+++
T Consensus 1212 eeA~~~Y~kA--------------------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------------------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHHhh--------------------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777776 1255699999999999999999999
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=8.5e-05 Score=67.60 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=68.4
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCC---CCCchHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 359 QLKISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKE-P-DNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g---~~~eAi~~l~~AL~~d-P-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.......+.+.+..++.|+.+.+.+ +.++++.+++..++.+ | ++.+++|.||..+++.|+|++|.++++++++.
T Consensus 22 ~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i- 100 (152)
T 1pc2_A 22 QSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT- 100 (152)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred HHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Confidence 3344445568999999999999988 6679999999999999 8 67999999999999999999999999999765
Q ss_pred hhcCCCCCh
Q 008435 434 FLAGHPTEP 442 (565)
Q Consensus 434 ~l~~~P~~~ 442 (565)
+|++.
T Consensus 101 ----eP~n~ 105 (152)
T 1pc2_A 101 ----EPQNN 105 (152)
T ss_dssp ----CTTCH
T ss_pred ----CCCCH
Confidence 57665
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.55 E-value=0.00012 Score=76.00 Aligned_cols=110 Identities=9% Similarity=0.001 Sum_probs=80.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHH---CCCCC-chHHHHH------HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 361 KISVENLTPKELIALSVKFLS---KGDKE-RPIPLLQ------LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 361 ~~~~~~~~~~~l~~lA~~l~~---~g~~~-eAi~~l~------~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
.+..+|..+..+..++..+.. .+... .....++ .++..+|+++.++..+|..+...|++++|+.+++||+
T Consensus 225 Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl 304 (372)
T 3ly7_A 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI 304 (372)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444445567777666666542 22111 1112222 2346789999999999999999999999999999998
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
++ +|. ..++..+|.++...|++++|+++|++ +.+++|.++
T Consensus 305 ~L-----n~s--------~~a~~llG~~~~~~G~~~eA~e~~~~-AlrL~P~~~ 344 (372)
T 3ly7_A 305 DL-----EMS--------WLNYVLLGKVYEMKGMNREAADAYLT-AFNLRPGAN 344 (372)
T ss_dssp HH-----CCC--------HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSCSHH
T ss_pred hc-----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCcC
Confidence 75 232 13567799999999999999999999 778999876
No 211
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.49 E-value=0.00026 Score=65.00 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-cCCC
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---------NALILMGQTQLQKGLLEEAVEYLECAISKLFL-AGHP 439 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a---------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l-~~~P 439 (565)
..+++....++..|.|+.|+.+...++....++. ++++.+|++++..|+|.+|+..|++|+..... ..++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4578889999999999999999999777654443 48999999999999999999999999877411 1111
Q ss_pred C----------Chh--hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 440 T----------EPE--AIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 440 ~----------~~~--~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
. .+. +.....+..|.++.||..+|++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 0 000 0011124678899999999999999999998
No 212
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.42 E-value=0.0037 Score=70.38 Aligned_cols=155 Identities=13% Similarity=0.031 Sum_probs=103.7
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHCCCCCchH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 008435 358 KQLKISVENLTPKELIALSVKFLSKGDKERPI-PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF-- 434 (565)
Q Consensus 358 ~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi-~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~-- 434 (565)
|.+.+..-+.+++.++..|.-+...|+.++|. ..|++|+...|++...|...+.+....|++++|.+.|+++++...
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44556666778888888888888899999997 999999999999999999999999999999999999999986420
Q ss_pred h----cCCCCChhhh----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-----
Q 008435 435 L----AGHPTEPEAI----DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV----- 501 (565)
Q Consensus 435 l----~~~P~~~~~~----~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l----- 501 (565)
. ...|.+.+.. .....+|........+.|+.++|.+.|+++.....+...... +..+...
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly-------i~~A~lE~~~~~ 484 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY-------LENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH-------HHHHHHHHTTTS
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH-------HHHHHHHHHhCC
Confidence 0 0012110000 011123444555666778888888888884332121222211 1111111
Q ss_pred -----HHHHHHHHhcCCCcHHHH
Q 008435 502 -----ANITFLIFATSPSIINLL 519 (565)
Q Consensus 502 -----~~~l~~Al~l~P~~~~~l 519 (565)
.+.|+++++..|+...+|
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHH
Confidence 567777777777766655
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.35 E-value=0.00085 Score=67.33 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=81.5
Q ss_pred HHHH-HhhCCCCHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008435 392 LQLA-LNKEPDNINALILMGQTQLQ---K--GL------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (565)
Q Consensus 392 l~~A-L~~dP~~a~A~~~LG~~~~~---~--g~------~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~ 459 (565)
+.++ -+.+|++++++++.|.+... . |. .++|...++||+++ ||+. ..-.+|..+|..|
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-----DP~~-----~~GsA~~~LG~lY 209 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-----WPSY-----QEGAVWNVLTKFY 209 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----CTTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-----CCCc-----ccCHHHHHHHHHH
Confidence 3444 44789999999999998753 2 32 48899999999876 3431 1124788899999
Q ss_pred HHc-----CCHHHHHHHHHHHhhccCCCC-chhhhhhhhHHHHH-HHHH--HHHHHHHHhcCCCc
Q 008435 460 IRQ-----EKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVL-ARYV--ANITFLIFATSPSI 515 (565)
Q Consensus 460 ~~~-----g~~~eAi~~leraa~~l~P~~-~~~~~~~~~~~~~L-a~~l--~~~l~~Al~l~P~~ 515 (565)
... |+.++|.++|+| +..++|+. ......|.+.++.. +..- .++++++++.+|..
T Consensus 210 ~~vPp~~gGd~ekA~~~fer-AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEH-LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHH-HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HhCCCccCCCHHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 884 999999999999 77899975 76655554433321 2111 78999999998873
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.31 E-value=0.00059 Score=72.68 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
.+...|..+...|++++|..+|.++ ..|..+|.++.+.|++++|+++|++|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 6778888899999999999999977 47888999999999999999999988
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.28 E-value=0.00066 Score=76.53 Aligned_cols=169 Identities=9% Similarity=-0.047 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----------CCC-----------CHHHHHHHHHHHHHcCCHHHHH
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNK-----------EPD-----------NINALILMGQTQLQKGLLEEAV 423 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----------dP~-----------~a~A~~~LG~~~~~~g~~~eA~ 423 (565)
|.+..-.+..+......|+.++|...|++++.. .|. +..+|...+.+..+.|..++|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 445666677788888899999999999999985 253 4568999999988999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH-
Q 008435 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV- 501 (565)
Q Consensus 424 ~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~-g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~l- 501 (565)
..|++|++.. |. ... ..+...+....+. ++.+.|.+.|++ +....|+++..+..|.+-....+..-
T Consensus 455 ~vf~~A~~~~-----~~---~~~---~lyi~~A~lE~~~~~d~e~Ar~ife~-~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 455 KIFGKCRRLK-----KL---VTP---DIYLENAYIEYHISKDTKTACKVLEL-GLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHHHHTG-----GG---SCT---HHHHHHHHHHHTTTSCCHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhc-----CC---CCh---HHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 9999997531 10 001 1233344444454 459999999999 55578888866544444333333222
Q ss_pred -HHHHHHHHhcCCC---cHHHHHhhhhhhHHHhhhh--hhhhhhhhhhhcc
Q 008435 502 -ANITFLIFATSPS---IINLLTVSNIIDIIYVNCY--ELKKKRFASCFFG 546 (565)
Q Consensus 502 -~~~l~~Al~l~P~---~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 546 (565)
...|++++...|+ ...+|....+.....+... ....+|+.++++.
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7899999999883 5566666555443333221 2233455555543
No 216
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00057 Score=70.89 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~------dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~ 442 (565)
+.....+|..+...|++++|+.++++++.. .+..++++..+|.+|...|++++|..+|++++... ...++
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~-- 210 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA--NSIYC-- 210 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCC--
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh--hcCCC--
Confidence 556788999999999999999999999875 45568899999999999999999999999997753 11111
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
........+..+|..+...|++++|..+|.++.
T Consensus 211 -~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 211 -PTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp -CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 112223456678999999999999999998843
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.00071 Score=72.17 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
+..+..+|..+..+|++++|+.+++++|+. -|++ +..+++||.+|..+|+++||+.+|+||+++......|+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778999999999999999999999974 3455 66799999999999999999999999998763344554
Q ss_pred Ch
Q 008435 441 EP 442 (565)
Q Consensus 441 ~~ 442 (565)
.+
T Consensus 420 Hp 421 (433)
T 3qww_A 420 HP 421 (433)
T ss_dssp CH
T ss_pred Ch
Confidence 44
No 218
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.06 E-value=0.0027 Score=55.73 Aligned_cols=91 Identities=10% Similarity=0.022 Sum_probs=73.1
Q ss_pred CCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE---AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~e---A~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~ 461 (565)
...+...|++++..++.+.++-+.+|+++....+..+ ++..++..++. + .+.......|.+|..+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~-----~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----G-----SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----S-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-----CcchHHHHHHHHHHHHHH
Confidence 3456788888899999999999999999999887766 88888877421 1 122334578889999999
Q ss_pred cCCHHHHHHHHHHHhhccCCCCchh
Q 008435 462 QEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 462 ~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
.|+|++|+.+++. +...+|++.++
T Consensus 87 lg~Y~~A~~~~~~-lL~~eP~n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRG-LLQTEPQNNQA 110 (126)
T ss_dssp TTCHHHHHHHHHH-HHHHCTTCHHH
T ss_pred hhhHHHHHHHHHH-HHHhCCCCHHH
Confidence 9999999999999 77799998764
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0014 Score=69.79 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~-----dP~~---a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~ 440 (565)
+..+..+|..+..+|++++|+.+++++|+. -|++ +..+++||.+|..+|++++|+.+|++|+++......|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 556778999999999999999999999974 3555 56799999999999999999999999998864445555
Q ss_pred ChhhhhHHHHHHHHHHHHHHH
Q 008435 441 EPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 441 ~~~~~~~~~~a~~~lG~a~~~ 461 (565)
.+ .......+++.+...
T Consensus 409 Hp----~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 409 HS----LIEDLILLLEECDAN 425 (429)
T ss_dssp SH----HHHHHHHHHHHHHHH
T ss_pred Ch----HHHHHHHHHHHHHHH
Confidence 44 222334456555543
No 220
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.84 E-value=0.0094 Score=63.43 Aligned_cols=91 Identities=13% Similarity=-0.037 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~ 450 (565)
.+..+|..+...|++++|++.+++| +++..|-..+.+....|++++|..+..+.+ .+ + +.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~---a---d~--- 209 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VH---A---DE--- 209 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TC---H---HH---
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hC---H---hh---
Confidence 4668899999999999999999999 689999999999999999999977776531 11 2 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~ 483 (565)
...+...|.+.|++++|+.++++ +..+++.+
T Consensus 210 -l~~lv~~Yek~G~~eEai~lLe~-aL~le~ah 240 (449)
T 1b89_A 210 -LEELINYYQDRGYFEELITMLEA-ALGLERAH 240 (449)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHH-HTTSTTCC
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHH-HhCCcHHH
Confidence 11266789999999999999999 55566444
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.62 E-value=0.013 Score=51.47 Aligned_cols=74 Identities=12% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCc---hHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 365 ENLTPKELIALSVKFLSKGDKER---PIPLLQLALNKE-P-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~e---Ai~~l~~AL~~d-P-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
.+.+.+..+..|+.+....+.++ ++.+++..+..+ | +.-+.+|.||..+++.|+|++|..+.+..++. +|
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-----eP 105 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EP 105 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CC
Confidence 45678999999999998876665 999999999988 6 67899999999999999999999999999765 57
Q ss_pred CChh
Q 008435 440 TEPE 443 (565)
Q Consensus 440 ~~~~ 443 (565)
++.+
T Consensus 106 ~n~Q 109 (126)
T 1nzn_A 106 QNNQ 109 (126)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 7654
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.22 Score=46.19 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----h-hcCCCC
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-----F-LAGHPT 440 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~-----~-l~~~P~ 440 (565)
.|++.-+.+| ++.|+++.|.+..+.. ++..-|..||......|+++-|+++|+++=... + ..++-
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~- 76 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDV- 76 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCH-
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCH-
Confidence 4788888887 8899999999987765 789999999999999999999999999982211 0 01110
Q ss_pred ChhhhhHHH-HH-----HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 441 EPEAIDLLI-VA-----SQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 441 ~~~~~~~~~-~a-----~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
+...... .+ +.....++..+|+++++++.|.+ ..
T Consensus 77 --e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~-~~ 116 (177)
T 3mkq_B 77 --NKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE-GG 116 (177)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-TT
T ss_pred --HHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH-CC
Confidence 0000000 00 11234567788999999999887 44
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.75 E-value=0.43 Score=42.48 Aligned_cols=96 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL---EEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~---~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
++++++++-.+-..+..++. +.-..++.+.+|+++....+. .+++..++..++. +|.+
T Consensus 15 ~~l~~eeL~~lr~qY~~E~~--------------~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~ 75 (144)
T 1y8m_A 15 EPLYPQQLEILRQQVVSEGG--------------PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESR 75 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTS--------------TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCST
T ss_pred CCCCHHHHHHHHHHHHHhcc--------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cccc
Confidence 45677777666655554411 246788889999999888755 5678888777542 3322
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
..+-.|.++..++++|+|++|..+.+. +.+.+|+|.++
T Consensus 76 ------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~-lL~~eP~n~QA 113 (144)
T 1y8m_A 76 ------RRECLYYLTIGCYKLGEYSMAKRYVDT-LFEHERNNKQV 113 (144)
T ss_dssp ------HHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHTCCCCHHH
T ss_pred ------hhHHHHHHHHHHHHhhhHHHHHHHHHH-HHhcCCCcHHH
Confidence 224577899999999999999999999 77789998754
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.51 E-value=0.12 Score=45.60 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC---CchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008435 364 VENLTPKELIALSVKFLSKGDK---ERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (565)
Q Consensus 364 ~~~~~~~~l~~lA~~l~~~g~~---~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P 439 (565)
....++...++.|+.+....+. .+++.+++..++.+| ..-+.+|.||..+++.|+|++|..+.++.+ ..+|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL-----~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF-----EHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----TTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----hhCC
Confidence 4556899999999999987644 469999999999999 458899999999999999999999999994 4567
Q ss_pred CChh
Q 008435 440 TEPE 443 (565)
Q Consensus 440 ~~~~ 443 (565)
++.+
T Consensus 110 ~N~Q 113 (134)
T 3o48_A 110 NNKQ 113 (134)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 7664
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.35 E-value=0.17 Score=45.57 Aligned_cols=114 Identities=7% Similarity=-0.023 Sum_probs=74.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH-HHHHcCCHHHH
Q 008435 396 LNKEPDNINALILMGQTQLQKGLL------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV-ACIRQEKWEEG 468 (565)
Q Consensus 396 L~~dP~~a~A~~~LG~~~~~~g~~------~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~-a~~~~g~~~eA 468 (565)
+-.+|+|++.|...-......|+. ++-.+.|+||++.. -|. . ....-..++.|+-. .+...++.++|
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~----Pp~-k-~~~wrrYI~LWIrYA~~~ei~D~d~a 79 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL----PPD-K-YGQNESFARIQVRFAELKAIQEPDDA 79 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS----CGG-G-GTTCHHHHHHHHHHHHHHHHHCGGGC
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC----Ccc-c-cccHHHHHHHHHHHHHHHHhcCHHHH
Confidence 357899999999999999999999 88999999998753 221 1 11111123333222 23566999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhhhHHHHHHHHH---------HHHHHHHHhcCCCcHHHHHhhh
Q 008435 469 IAHLERIGNLKEPEEPKSKAHYYDGLVVLARYV---------ANITFLIFATSPSIINLLTVSN 523 (565)
Q Consensus 469 i~~leraa~~l~P~~~~~~~~~~~~~~~La~~l---------~~~l~~Al~l~P~~~~~l~~~~ 523 (565)
.+.|+.+.. .....++. ++..|.+. .+.+.+|+.+.|.-.+.+...-
T Consensus 80 R~vy~~a~~-~hKkFAKi-------wi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 80 RDYFQMARA-NCKKFAFV-------HISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHHHHHHH-HCTTBHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHHHH-HhHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 999999434 44444333 23444444 7889999999998777665543
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.09 E-value=0.26 Score=43.36 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhcCCCCC
Q 008435 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL---EEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~---~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
++.+++++-.+-..+.++ + .+--.+.+-+.+|+++....+. .+++..++..++. +|
T Consensus 16 ~~~~~eeL~~l~~qy~~E-------------~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~-- 74 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSE-------------G-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AE-- 74 (134)
T ss_dssp CCCCHHHHHHHHHHHHHT-------------T-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CG--
T ss_pred CCCCHHHHHHHHHHHHHH-------------h-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cc--
Confidence 456677775554444332 1 2233567888888888888754 5678888777542 22
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchh
Q 008435 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (565)
Q Consensus 442 ~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~ 486 (565)
....+-++.+++.+.++|+|++|+.+.+. +...+|+|.++
T Consensus 75 ----~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~-lL~~eP~N~QA 114 (134)
T 3o48_A 75 ----SRRRECLYYLTIGCYKLGEYSMAKRYVDT-LFEHERNNKQV 114 (134)
T ss_dssp ----GGHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHTTCTTCHHH
T ss_pred ----chhHHHHHHHHHHHHHhhhHHHHHHHHHH-HHhhCCCCHHH
Confidence 12234678899999999999999999999 77789998754
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.98 E-value=0.82 Score=47.51 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008435 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN----------------------INALILMGQTQLQKGLLEEAVEYLE 427 (565)
Q Consensus 370 ~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~----------------------a~A~~~LG~~~~~~g~~~eA~~~~~ 427 (565)
+.++..|......|+.++|...+++|+.+..+. ..+...++..+...|++++|+..++
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344556666667889999999999999876332 1244456777888999999999999
Q ss_pred HHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 428 rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
+++.. +|-+. .++..+-.++...|+..+|++.|++.
T Consensus 196 ~~~~~-----~P~~E-------~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 196 ALTFE-----HPYRE-------PLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHH-----STTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHh-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99654 35432 35666788999999999999999983
No 228
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.51 Score=49.79 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~---~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~ 447 (565)
....+|..+.+.|++++|.++|.++...... -.+.+...-.++...+++..+..++++|-... ... .++ +.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~--~~~-~d~---~~ 206 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI--EKG-GDW---ER 206 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTC-CCT---HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--hcC-CCH---HH
Confidence 4678999999999999999999999885433 37788888889999999999999999996542 111 112 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 448 LIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 448 ~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
........|.++...++|.+|..+|-.+..
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 223344567888899999999999988433
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.60 E-value=0.23 Score=44.30 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHCCCC---CchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008435 366 NLTPKELIALSVKFLSKGDK---ERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~---~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~ 441 (565)
..+++..++.|+.+....+. .+++.+++..+..+| +.-+.+|.||..+++.|+|++|..+.+..++ .+|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~-----~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE-----HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCc
Confidence 56899999999999987644 479999999999999 5678999999999999999999999999955 46876
Q ss_pred hh
Q 008435 442 PE 443 (565)
Q Consensus 442 ~~ 443 (565)
.+
T Consensus 111 ~Q 112 (144)
T 1y8m_A 111 KQ 112 (144)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.35 E-value=0.36 Score=52.09 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d-P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
|...+..+...+.+.|+.++|..+|++..+.. .-+...|..+=..|.+.|+.++|.+.|++-.+.. ..|+
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G---~~Pd------ 174 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE---VVPE------ 174 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CCCC------
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCC------
Confidence 45567777788899999999999999988753 2367788888889999999999999999986532 2232
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 447 LLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
...|..+-.+|.+.|+.++|.+.|+++
T Consensus 175 --~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 175 --EPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 123555777899999999999999994
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.92 E-value=1.3 Score=47.58 Aligned_cols=122 Identities=11% Similarity=-0.087 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh-----------------------
Q 008435 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----------------------- 444 (565)
Q Consensus 388 Ai~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~----------------------- 444 (565)
....|++++...|.++..|+..+..+...|+.++|.+.|++|+.. |.+..-
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l~~~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFLSLYYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 467888888888888888888888888888888888888888642 432100
Q ss_pred ----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCchhhhhhhhHHHHHHHH--H---HHHHHHHH
Q 008435 445 ----------IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLARY--V---ANITFLIF 509 (565)
Q Consensus 445 ----------~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~~~~~~~~~~~~La~~--l---~~~l~~Al 509 (565)
.......|...+....+.|+.++|.+.|++ +. .|.. ....+...+....... . .+.+++++
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~-A~--~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE-LG--NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HT--TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-hh--CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 000011233334444567889999999999 42 3331 1112111111111100 0 67788899
Q ss_pred hcCCCcHHHH
Q 008435 510 ATSPSIINLL 519 (565)
Q Consensus 510 ~l~P~~~~~l 519 (565)
+.-|+..+++
T Consensus 348 ~~~~~~~~~~ 357 (493)
T 2uy1_A 348 LKHPDSTLLK 357 (493)
T ss_dssp HHCTTCHHHH
T ss_pred HHCCCCHHHH
Confidence 8888866554
No 232
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.90 E-value=0.47 Score=50.94 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=74.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHH--------------------------
Q 008435 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT-------------------------- 412 (565)
Q Consensus 359 ~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~-------------------------- 412 (565)
.+.+..-+.+++.++..+.-+.+.|+.++|...|++|+.. |++...|...+..
T Consensus 203 e~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 203 NYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------C
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 3444444566888888888888999999999999999999 9987666554443
Q ss_pred --------------HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhh
Q 008435 413 --------------QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGN 477 (565)
Q Consensus 413 --------------~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g-~~~eAi~~leraa~ 477 (565)
..+.+..++|...|++| . .|. . . ...+...+......| +.+.|.+.|++ +.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~------~~~-~---~--~~v~i~~A~lE~~~~~d~~~ar~ife~-al 347 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-G------NEG-V---G--PHVFIYCAFIEYYATGSRATPYNIFSS-GL 347 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T------TSC-C---C--HHHHHHHHHHHHHHHCCSHHHHHHHHH-HH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h------CCC-C---C--hHHHHHHHHHHHHHCCChHHHHHHHHH-HH
Confidence 11244567777777777 2 121 1 0 112322333333344 69999999999 54
Q ss_pred ccCCCCchh
Q 008435 478 LKEPEEPKS 486 (565)
Q Consensus 478 ~l~P~~~~~ 486 (565)
...|+++..
T Consensus 348 ~~~~~~~~~ 356 (493)
T 2uy1_A 348 LKHPDSTLL 356 (493)
T ss_dssp HHCTTCHHH
T ss_pred HHCCCCHHH
Confidence 456777754
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.67 E-value=0.44 Score=42.92 Aligned_cols=106 Identities=10% Similarity=0.063 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCC------CchHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008435 365 ENLTPKELIALSVKFLSKGDK------ERPIPLLQLALNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAI 430 (565)
Q Consensus 365 ~~~~~~~l~~lA~~l~~~g~~------~eAi~~l~~AL~~dP~--------~a~A~~~LG~~~~~~g~~~eA~~~~~rAl 430 (565)
.+.|++.+......+...|+. ++-++.|++|+..-|- ++..|...+.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 456788888888888878988 7888999999997765 46667777755 46689999999999997
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 431 ~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+.. .+ +...|...+.-..++|+.++|++.+.+ +.-..|.+.
T Consensus 88 ~~h-----Kk-------FAKiwi~~AqFEiRqgnl~kARkILg~-AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANC-----KK-------FAFVHISFAQFELSQGNVKKSKQLLQK-AVERGAVPL 128 (161)
T ss_dssp HHC-----TT-------BHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCBCH
T ss_pred HHh-----HH-------HHHHHHHHHHHHHHcccHHHHHHHHHH-HhccCCCcH
Confidence 631 11 123444455556889999999999999 665777654
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.75 E-value=0.35 Score=44.19 Aligned_cols=61 Identities=10% Similarity=0.119 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhC------C-------------------CCHHHHHHHHHHHHHcCCHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE------P-------------------DNINALILMGQTQLQKGLLEEAV 423 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~d------P-------------------~~a~A~~~LG~~~~~~g~~~eA~ 423 (565)
.+.++..|..++.+|+|.+|...|++||+.. + .+.+..|.++.||...+++++|+
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 4567889999999999999999999997632 1 22378899999999999999999
Q ss_pred HHHHHH
Q 008435 424 EYLECA 429 (565)
Q Consensus 424 ~~~~rA 429 (565)
..++..
T Consensus 143 ~~Le~I 148 (167)
T 3ffl_A 143 AILDGI 148 (167)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 998876
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.33 E-value=1.2 Score=43.94 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=51.9
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
..+++.|+.++|+..++..++.+|.|+.....+-+++.-.|+|+.|.+.++-+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999888665
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.00 E-value=0.26 Score=55.86 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
..-+..++.-+..+|+++-|+.+.++|+..-|.+...|+.|+.+|...|+|+.|+-.+.-.
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3467788988999999999999999999999999999999999999999999998766544
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.68 E-value=0.49 Score=49.24 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
....++..+...|++++|+..+++++..||-+-.+|..+=.++.+.|+..+|++.|++.-+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456677788999999999999999999999999999999999999999999999998654
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.37 E-value=0.37 Score=52.00 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+..+|....-...++.|..+|++|+.++|++..+|+.||.++...|+.-+|+-+|.|++.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 345676666677889999999999999999999999999999999999999999999964
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.74 E-value=1.5 Score=48.82 Aligned_cols=91 Identities=18% Similarity=0.051 Sum_probs=57.8
Q ss_pred HHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhcCCCCChhhhhHHHH-H---
Q 008435 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLIV-A--- 451 (565)
Q Consensus 379 l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~---~l~~~P~~~~~~~~~~~-a--- 451 (565)
.++.|++++|.+.. ..-++...|..+|..+.+.|+++.|+++|.++=... .+.....+.+....... +
T Consensus 662 ~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 36778999888864 445788999999999999999999999999862111 01000111111100000 0
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHH
Q 008435 452 --SQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 452 --~~~lG~a~~~~g~~~eAi~~ler 474 (565)
+.....++...|++++|++.|.+
T Consensus 737 ~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCHHHHHHHHHH
Confidence 11133467778999999998888
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.54 E-value=1.1 Score=49.99 Aligned_cols=102 Identities=13% Similarity=-0.029 Sum_probs=61.2
Q ss_pred CchhhhcCCCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008435 355 SPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (565)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~ 434 (565)
....+.++.....++..+-.+|..+++.|+++.|+.+|.++-. . -.+..++...|+.+...+..+.+...
T Consensus 667 ~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~---~~l~~l~~~~~~~~~~~~~~~~a~~~-- 736 (814)
T 3mkq_A 667 QLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----L---ESLFLLHSSFNNKEGLVTLAKDAETT-- 736 (814)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----H---HHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----h---hhhHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 3333445555555677788889999999999999999998732 2 24455555566666555544444221
Q ss_pred hcCCCCChhhhhHHHHHHH------HHHHHHHHcCCHHHHHHHHHH
Q 008435 435 LAGHPTEPEAIDLLIVASQ------WSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 435 l~~~P~~~~~~~~~~~a~~------~lG~a~~~~g~~~eAi~~ler 474 (565)
++. .....++. ..-.+|.+.+++++|+..-++
T Consensus 737 --~~~------~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 737 --GKF------NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp --TCH------HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --Cch------HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH
Confidence 000 00001111 133468889999999987665
No 241
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=86.55 E-value=9.5 Score=40.76 Aligned_cols=82 Identities=9% Similarity=-0.027 Sum_probs=62.0
Q ss_pred CCchHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcC
Q 008435 385 KERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (565)
Q Consensus 385 ~~eAi~~l~~AL~~dP-~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g 463 (565)
.++|.+.|++..+..- -|...|..+-..+.+.|++++|.+.|++..+.. ..|+ ...|..+-.+|.+.|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd--------~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPR--------LRSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCC--------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc--------cceehHHHHHHHHCC
Confidence 4568888888776532 267788999999999999999999999985431 2232 123455667889999
Q ss_pred CHHHHHHHHHHHhh
Q 008435 464 KWEEGIAHLERIGN 477 (565)
Q Consensus 464 ~~~eAi~~leraa~ 477 (565)
+.++|.+.|+++..
T Consensus 155 ~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 155 DADKAYEVDAHMVE 168 (501)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999544
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=85.26 E-value=7.4 Score=35.75 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=69.3
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-C---------h
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-E---------P 442 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~-~---------~ 442 (565)
...+..+.-.|.+.+++-++ ..-+-+.+.+--..+|....++..|+.+.+..++-. .+.+|+ | +
T Consensus 37 lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~k-vd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGK-VERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SBCCCCCCHHHHTTSCCT
T ss_pred hhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCcccccccceeeecc
Confidence 45677778888888887654 345678888999999999999999999999997432 334443 1 1
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 443 ~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
++.+. -+..+|..+.+.|+.+||+.++.+
T Consensus 111 ~DkEf---Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 111 GDEEF---FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp TCHHH---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHH---HHHHHHHHHHHhcCHHHhhhHhhh
Confidence 11121 244589999999999999999988
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.74 E-value=4.2 Score=42.31 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP------~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
..+|..++..|++.+|...+++.++.-. .-.+.+..-.++|...+++.++..+|.+|.... -.. +.++ .
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~ai-~~~p---~ 177 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-NAI-YCPP---K 177 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS-CCCH---H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccC-CCCH---H
Confidence 4789999999999999999998887321 226778888899999999999999999996543 011 1111 1
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 008435 447 LLIVASQWSGVACI-RQEKWEEGIAHLERIG 476 (565)
Q Consensus 447 ~~~~a~~~lG~a~~-~~g~~~eAi~~leraa 476 (565)
........-|..+. ..++|.+|...|-++.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12223455788999 8999999999988843
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.62 E-value=2.6 Score=47.67 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=57.5
Q ss_pred chHHHHHHHHhh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008435 387 RPIPLLQLALNK--------EPDNI----------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (565)
Q Consensus 387 eAi~~l~~AL~~--------dP~~a----------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~ 448 (565)
+|+..+.++++. .+.+. ..+..-+..+..+|+++-|+++.++|+... |.+-
T Consensus 303 ~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-----PseF------ 371 (754)
T 4gns_B 303 DMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-----LDSF------ 371 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCH------
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----chhh------
Confidence 467777777642 33332 345555666778999999999999998763 4332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 449 IVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 449 ~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
..|+.|+.+|..+|+|+.|+-.+..
T Consensus 372 -~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 372 -ESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccHHHHHHHHhc
Confidence 5789999999999999999999887
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.10 E-value=3.6 Score=45.44 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=58.2
Q ss_pred CCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008435 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (565)
Q Consensus 382 ~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~ 461 (565)
.+...++...+.+......++ .....++....+.|++++|..+|++. +.+. .....+.||+|.++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l---------~~~~---~~~~r~~YW~~ra~~~ 331 (618)
T 1qsa_A 265 NDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARL---------PMEA---KEKDEWRYWQADLLLE 331 (618)
T ss_dssp TTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHS---------CTTG---GGSHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHc---------cccc---cccHhHHHHHHHHHHH
Confidence 333667788888766544444 34445555566789999999999876 2211 1123578999999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 008435 462 QEKWEEGIAHLERIGN 477 (565)
Q Consensus 462 ~g~~~eAi~~leraa~ 477 (565)
+|+.++|..+|++++.
T Consensus 332 ~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 332 RGREAEAKEILHQLMQ 347 (618)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999998543
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=79.60 E-value=5.5 Score=42.77 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P 481 (565)
.+..||.+....+.++.|..+|++|+.+ +|++. .++..+|......|+.-+|+-+|-|+.....|
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-----~P~~G-------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL-----VPSNG-------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTBS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh-----CCCCC-------chHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999999765 46543 35777999999999999999999995544444
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=71.21 E-value=13 Score=43.54 Aligned_cols=96 Identities=15% Similarity=0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~----dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~ 446 (565)
.+..+-..+++.|+.++|..+|++.-+. -.-|...|..|=..+.+.|+.++|.+.|++-.+.. ..|+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G---~~PD------ 199 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG---LTPD------ 199 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCC------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCc------
Confidence 3555666789999999999999775432 24467788888899999999999999999985432 2332
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 008435 447 LLIVASQWSGVACIRQEKW-EEGIAHLERIGN 477 (565)
Q Consensus 447 ~~~~a~~~lG~a~~~~g~~-~eAi~~leraa~ 477 (565)
...|..+-.++++.|+. ++|.+.|+++..
T Consensus 200 --vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 200 --LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp --HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 12344455678888884 788899988543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.05 E-value=29 Score=36.36 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008435 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (565)
Q Consensus 371 ~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~ 444 (565)
....+|..+.+.|++.+|.+.++.....--.. .+.+..-..++...+++.+|...+.++-... .. .+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~-~~-~~~---~ 213 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT-FK-NPK---Y 213 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-SSC---C
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-cc-cCC---c
Confidence 34578999999999999999999886532111 6788888999999999999999999984321 11 111 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 445 ~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
++....-+...|..+...++|.+|..+|..+.
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12222335568888999999999999998843
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=70.07 E-value=64 Score=29.43 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
|++..+.++ .+.|+++.|.+..+.. +.+ .-|-.+|.....+|+++-|+..|++ +.
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l--------------~~~---~~Wk~Lg~~AL~~gn~~lAe~cy~~-~~ 61 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL--------------NDS---ITWERLIQEALAQGNASLAEMIYQT-QH 61 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH--------------CCH---HHHHHHHHHHHHTTCHHHHHHHHHH-TT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh--------------CCH---HHHHHHHHHHHHcCChHHHHHHHHH-hC
Confidence 444444444 6899999999987665 111 2366799999999999999999999 54
No 250
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=66.97 E-value=78 Score=29.07 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHh--h---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALN--K---------------EPDNIN-ALILMGQTQLQKGLLEEAVEYLECA 429 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~--~---------------dP~~a~-A~~~LG~~~~~~g~~~eA~~~~~rA 429 (565)
+.-..+-.+..+...+++.+|+..++..++ . ||.+-+ .+..+|.+..+.|+.+||+.+|.+.
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 456677788888999999999999999993 2 244444 5678899999999999999999987
Q ss_pred HHh
Q 008435 430 ISK 432 (565)
Q Consensus 430 l~l 432 (565)
-..
T Consensus 141 f~~ 143 (242)
T 3kae_A 141 FGK 143 (242)
T ss_dssp HHH
T ss_pred cCC
Confidence 655
No 251
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.72 E-value=14 Score=33.42 Aligned_cols=67 Identities=4% Similarity=0.028 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCC------HHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INAL---ILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~------a~A~---~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
.+....+..|..++..|++=+|-+.++.+-...++. ..++ ...|..+.+.|+..-|...+++|+..+
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346677899999999999999999999999887665 2222 223445678899999999999998763
No 252
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.97 E-value=50 Score=38.24 Aligned_cols=106 Identities=11% Similarity=-0.007 Sum_probs=67.2
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc-CCCC-Chh-h------
Q 008435 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA-GHPT-EPE-A------ 444 (565)
Q Consensus 374 ~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~-~~P~-~~~-~------ 444 (565)
.+...+...|.++ +.+..+.--|.++-.-|.+|.++...|++++|.++|+||-.- +. .+.. +.. .
T Consensus 815 ~l~~~L~~~~~~~----~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g--l~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 815 ELVEKLFLFKQYN----ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV--LYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHHTTCHH----HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT--TCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHHhcHHH----HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--cccCcccccchhhhhhccC
Confidence 3445555566554 345567788889888999999999999999999999998211 10 0000 000 0
Q ss_pred ----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 445 ----IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 445 ----~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
......-|......+.+.+.++.+++.-+.+.....++|+.
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00011123345666788888888888888755556666554
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.58 E-value=44 Score=35.89 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDN-------INALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 372 l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~-------a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+..+-..|+..+.++.|..+..++. .|.+ ++-+|.+|.++..+++|.+|.+++..|++
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3345566788999999999999985 4432 66788899999999999999999999964
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.47 E-value=13 Score=44.05 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHh---hC--------------------CCCHHHHHHHHHHHHHcCCHHHHH
Q 008435 367 LTPKELIALSVKFLSKGDKERPIPLLQLALN---KE--------------------PDNINALILMGQTQLQKGLLEEAV 423 (565)
Q Consensus 367 ~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~---~d--------------------P~~a~A~~~LG~~~~~~g~~~eA~ 423 (565)
.++...|.+|..++..|++++|..+|++|-. .+ ...+.-|+....++.+.|.++.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566678999999999999999999998732 11 112345677778888999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008435 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (565)
Q Consensus 424 ~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~ler 474 (565)
+..+.||+.. ++++. +....-|..+=..+...|+|++|...+-.
T Consensus 920 ~fa~lAi~~~----~~~~~---~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 920 EFSLLADASK----ETDDE---DLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHC----CSCCH---HHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHhc----cCCCh---hhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9999998642 22222 11112344555678899999999988866
No 255
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=64.46 E-value=23 Score=30.96 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHH
Q 008435 417 GLLEEAVEYLECAIS 431 (565)
Q Consensus 417 g~~~eA~~~~~rAl~ 431 (565)
++.+++..++++|.+
T Consensus 4 ~~~ee~~~wl~~A~~ 18 (141)
T 3o10_A 4 GNPVEARRWLRQARA 18 (141)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 678899999999943
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.82 E-value=18 Score=38.82 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCch----------HHHHHHHHh-----hCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008435 363 SVENLTPKELIALSVKFLSKGDKERP----------IPLLQLALN-----KEPD-NINALILMGQTQLQKGLLEEAVEYL 426 (565)
Q Consensus 363 ~~~~~~~~~l~~lA~~l~~~g~~~eA----------i~~l~~AL~-----~dP~-~a~A~~~LG~~~~~~g~~~eA~~~~ 426 (565)
+.+.+.+..++-.+..+...|+..+. ...+-.+++ .|+. -+..+..+=..|...+.++.|....
T Consensus 175 tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lv 254 (523)
T 4b4t_S 175 SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFI 254 (523)
T ss_dssp ----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHH
Confidence 34455666777666666666665542 222333332 3332 3677888888899999999999999
Q ss_pred HHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 427 ~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
.++. .|...........-+|.+|.++..+++|.+|.+++.. +.+..|.+.
T Consensus 255 sk~~-------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~-A~rkap~~~ 304 (523)
T 4b4t_S 255 SKLE-------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA-AIRKAPHNS 304 (523)
T ss_dssp HHHC-------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HTSSCSCSS
T ss_pred hcCc-------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCcch
Confidence 9982 3432111112223466799999999999999999999 666777654
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.07 E-value=95 Score=31.99 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
..+|.+|...|+|.+|.+.+.+..+-. . .-+ +.....+.+..-...|..+|++.++.+++.++
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~--~-~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLREL--K-KLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--T-TSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH--h-ccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 479999999999999999999997643 1 111 12344456666777899999999999999984
No 258
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=57.45 E-value=8 Score=30.88 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=16.3
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 008435 414 LQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~l~ 433 (565)
-..|++++|+.+|.+|++..
T Consensus 30 D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 57889999999999987653
No 259
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=57.14 E-value=8.1 Score=30.78 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=23.9
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+|+.+.++|++. -..|++++|+.+|..|++..
T Consensus 10 ~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 10 MARKYAILAVKA---------------DKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHHH
Confidence 566666666554 57889999999999997653
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.57 E-value=1.1e+02 Score=36.01 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=66.4
Q ss_pred HHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC--Chhhh-hH----
Q 008435 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EPEAI-DL---- 447 (565)
Q Consensus 375 lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~--~~~~~-~~---- 447 (565)
+...+...+.++-|.. .+..-|.++..-|.+|.++...|++++|.++|++|..-. ...+.. ..... +.
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~-~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-YSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC-TTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-cccchhhhhhcccccccccc
Confidence 3344566666665543 455678888888999999999999999999999983210 000000 00000 00
Q ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 448 -----LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 448 -----~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
...-|+++...+.+.|.++.+++.-+.+.....++++
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~ 934 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 934 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh
Confidence 0112445666778899999999988885555555554
No 261
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=52.21 E-value=65 Score=29.87 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
+|.+|..+...++|.+|.++|.+ |.+..|++.
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~-A~~~~~~~~ 48 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSF-AFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHSCTTC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHH-HHHHCCHhH
Confidence 67799999999999999999999 555677654
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.17 E-value=14 Score=40.66 Aligned_cols=100 Identities=11% Similarity=-0.057 Sum_probs=67.2
Q ss_pred HHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------hhcCCCC-------C
Q 008435 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL--------FLAGHPT-------E 441 (565)
Q Consensus 377 ~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~--------~l~~~P~-------~ 441 (565)
...+..|+++.|..++++.-....+..++.|.+|..+...|+.++|..+|+++.+-. ...+.|. .
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~ 372 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Confidence 345567999999999988766555789999999999999999999999999985421 0111110 0
Q ss_pred hhhhhH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 442 PEAIDL-LIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 442 ~~~~~~-~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
...... ........+..+...|+.++|...+..+.
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~ 408 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV 408 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 000011 11122335566778888888888777733
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=51.63 E-value=28 Score=34.13 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCch
Q 008435 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (565)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~~ 485 (565)
+.+.|+.++|++..+..|+. +|.|... ...+-..++-.|+++.|.+.++- +..++|+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~-----~P~da~~-------R~~LfqLLcv~G~w~RA~~QL~~-~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-----SPKDASL-------RSSFIELLCIDGDFERADEQLMQ-SIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-----CTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHH-HHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHh-----CCcCHHH-------HHHHHHHHHhcCCHHHHHHHHHH-HHHhCchhhH
Confidence 45788999999999999754 5776622 22355678999999999999999 5567777654
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=49.19 E-value=41 Score=29.80 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHHHHHHH-HHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 371 ELIALSVKF-LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 371 ~l~~lA~~l-~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+++.+|... ..+|+.|+=.+.+...+.-++-+++.++.+|.+|.+.|+..+|-+...+|-+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 466677665 4677877777777777777788899999999999999999999999999954
No 265
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.52 E-value=12 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 008435 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~leraa~~l~P~~~ 484 (565)
...+|..+...|++++|..||-+ |....|+-.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~n-Al~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTN-AIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHTCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-HHHHcCCHH
Confidence 34589999999999999999999 555666543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.88 E-value=1.6e+02 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008435 401 DNINALILMGQTQLQKGLLEEAVEYL 426 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~~eA~~~~ 426 (565)
.+++.|..+|..|.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45555666666666666666665555
No 267
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=46.68 E-value=17 Score=40.40 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL 419 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~ 419 (565)
.++.....|...+..|+|.-|..+.+.++..||+|.+|...++.+|.+.|.-
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999999999999999999988743
No 268
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=45.83 E-value=76 Score=32.44 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHC--CCCCchHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLSK--GDKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~--g~~~eAi~~l~~AL~~-----dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-|-.+..+|...-.. .....++.+|.+|+.. +-.+...|..+|..+++.+++.||+.++..|-..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 355666666555443 3444589999999873 4667899999999999999999999999998654
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.08 E-value=26 Score=27.26 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCC
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPD 401 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~ 401 (565)
.++|..+...|++++|..+|-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34555555555555555555555555443
No 270
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=45.08 E-value=27 Score=28.64 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=30.7
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 008435 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (565)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l~P~ 482 (565)
+|+|.+....+..-...+|..+...|++++|+.||-+ |....|+
T Consensus 9 ~~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~n-Al~Vc~q 52 (95)
T 1om2_A 9 DLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTN-AIAVCGQ 52 (95)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHcCC
Confidence 4455544444434445699999999999999999989 5545544
No 271
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=43.05 E-value=7.4 Score=31.30 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=15.3
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 008435 414 LQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~l~ 433 (565)
-..|++++|+.+|..|++..
T Consensus 27 D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 56778888888888887764
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.88 E-value=43 Score=34.79 Aligned_cols=66 Identities=18% Similarity=-0.013 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008435 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (565)
Q Consensus 402 ~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa 476 (565)
-.+++..+|..|...|++++|.++|.++.... ..+. .....+...-.++...+++..+..+++++-
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~~------~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---ISTG------AKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCCC------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChH------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34578899999999999999999999986532 1111 112344455567788999999999999943
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=42.78 E-value=30 Score=27.66 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 366 ~~~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
+..+..+...|...-..|++++|+.+|+.+++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33466777888888888888888888777765
No 274
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.69 E-value=18 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=22.5
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+|+.++++|++. -..|++++|+.+|..|++..
T Consensus 14 ~Ai~lv~~Ave~---------------D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 14 AAVAVLKRAVEL---------------DAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHhCCHHHHHHHHHHHHHHH
Confidence 456666666544 46788888888888887653
No 275
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=47.80 E-value=5.5 Score=44.43 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEA 422 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA 422 (565)
++..++.|...+.+|++.-|..+++.++..||+|.+|...++.+|.+.|.-.|.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 566778889999999999999999999999999999999999999999965544
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=40.98 E-value=18 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+.++...|...-..|++++|+.+|+++++.
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677777777788888888877776653
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=40.55 E-value=43 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAIS 431 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~ 431 (565)
+-.+-..+..+...|+|+||+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455677777788888888888888854
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.21 E-value=19 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+.++...|...-..|++++|+.+|+++++.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 556888899999999999999998887763
No 279
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.97 E-value=1.2e+02 Score=31.59 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHC--CCCCchHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 368 TPKELIALSVKFLSK--GDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~--g~~~eAi~~l~~AL~-----~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
-|.++.++|...-.. .....++.+|++|+. .+-.+...|..+|-.+++.+++.||+.++..|-..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 466777777665433 344568999999988 45667889999999999999999999999998654
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.38 E-value=24 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
+..+-..|..++..|+||+||.+.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777899999999999999999888753
No 281
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=34.92 E-value=2.3e+02 Score=33.24 Aligned_cols=67 Identities=15% Similarity=-0.027 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
-..+..+=..+.+.|+.++|.+.|++--+....-..|+ ...|.-+-..|++.|+.++|.+.|+++..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--------LDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--------HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34577777789999999999999976532210011222 12455577789999999999999999543
No 282
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=34.64 E-value=26 Score=27.64 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=12.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 409 MGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 409 LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
+|+=|...|+|+.|+.+|+.+++.
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHH
Confidence 444444555555555555555444
No 283
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=34.18 E-value=1.4e+02 Score=31.04 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCC--CCCchHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKG--DKERPIPLLQLALN-----KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g--~~~eAi~~l~~AL~-----~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
|..+..+|...-..- ....++.+|.+|+. .+-.+...|..+|..+++.+++.||+.++..|-..
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 555555655443332 33358888988887 34667889999999999999999999999998654
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.73 E-value=1.8e+02 Score=28.86 Aligned_cols=23 Identities=9% Similarity=-0.104 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008435 451 ASQWSGVACIRQEKWEEGIAHLE 473 (565)
Q Consensus 451 a~~~lG~a~~~~g~~~eAi~~le 473 (565)
-|..+|..+.+.|++.+|..||-
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHH
Confidence 36669999999999999999984
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.44 E-value=4.3e+02 Score=27.20 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008435 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (565)
Q Consensus 405 A~~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~lera 475 (565)
....|+.+|...|++.+|.+.+.....- ..+ .. +.......+......|...+++.+|...++++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~E--t~~-~~---~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVE--TYG-SM---EMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCS-SS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--HHh-cc---cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4467999999999999999999887421 111 11 11222334555666788999999999999994
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.14 E-value=2.2e+02 Score=28.60 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 008435 452 SQWSGVACIRQEKWEEGIAHL 472 (565)
Q Consensus 452 ~~~lG~a~~~~g~~~eAi~~l 472 (565)
|..+|..+.+.|++.+|..||
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 556899999999999999998
No 287
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.31 E-value=35 Score=26.90 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=22.8
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+|+.+..+|++. -..|++++|+.+|..|++..
T Consensus 12 ~A~~l~~~Av~~---------------D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 12 KGIELVQKAIDL---------------DTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHH
Confidence 566666666533 46788888888888888764
No 288
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=29.13 E-value=35 Score=27.58 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
+..++..|...-..|++++|+.+|..|++.
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 567888999999999999999988877663
No 289
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=28.47 E-value=41 Score=23.20 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.0
Q ss_pred ChhHHHHHHHhhhcccc
Q 008435 1 MATAKLLLLQLRRCSYY 17 (565)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (565)
||.+|+|-+.||.|..+
T Consensus 1 masrrllasllrqsaqr 17 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQR 17 (54)
T ss_dssp -CCSHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHh
Confidence 89999999999998764
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.01 E-value=1.6e+02 Score=30.90 Aligned_cols=147 Identities=7% Similarity=-0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC--CCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-CCCC
Q 008435 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGH--PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK-EPEE 483 (565)
Q Consensus 407 ~~LG~~~~~~g~~~eA~~~~~rAl~l~~l~~~--P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~~l-~P~~ 483 (565)
..+=.+|.+.|+..-+...++.. .-... +-+.-.......-+|++|..+..+++|.+|.+++.. |.+. .|.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i----~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~-A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNF----QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNE-AFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTH----HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh----ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHH-HHHhcCCcc
Q ss_pred -----chhhhhhhhHHHHHHHHH------HHHHHHH--HhcCCCcHHHHHhhhhhhHHHhhhhhhhhhhhhhhhccchhH
Q 008435 484 -----PKSKAHYYDGLVVLARYV------ANITFLI--FATSPSIINLLTVSNIIDIIYVNCYELKKKRFASCFFGFSVL 550 (565)
Q Consensus 484 -----~~~~~~~~~~~~~La~~l------~~~l~~A--l~l~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (565)
..........+......+ ...+++. -++.|-+.+ +.++-+.|++ ..+.+...+ |++.+.-.|..
T Consensus 255 ~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~-L~~AVr~Gdl-~~F~~~L~~-~~~~f~~~gil 331 (455)
T 3t5v_B 255 LTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSV-LYKHVRYGNI-QGVSLWLRQ-NERHLCARQLL 331 (455)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHH-HHHHHHHTCH-HHHHHHHHH-THHHHHHTTCH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHH-HHHHHHhCCH-HHHHHHHHH-hHHHHHHcCCH
Q ss_pred HHHHHHHHhhhhcc
Q 008435 551 YVMLVAMLKLRSIC 564 (565)
Q Consensus 551 ~~~~~~~~~~~~~~ 564 (565)
|.-+ .|+|.+|
T Consensus 332 y~Ll---erLr~~v 342 (455)
T 3t5v_B 332 IVLL---EKLPMVT 342 (455)
T ss_dssp HHHH---HHHHHHH
T ss_pred HHHH---HHHHHHH
No 291
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.23 E-value=81 Score=25.50 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~dP~~a------~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+..|..++..|++=+|-+.++.+-...|+.- -+....|..+.+.|+. |...+++|+..+
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L 69 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARL 69 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence 5678889999999999999999999886531 1233334445577888 999999998753
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=26.86 E-value=27 Score=28.58 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHhhC
Q 008435 373 IALSVKFLSKGDKERPIPLLQLALNKE 399 (565)
Q Consensus 373 ~~lA~~l~~~g~~~eAi~~l~~AL~~d 399 (565)
.++|..+...|+++.|+.+|-+|+...
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 355666666666666666555555543
No 293
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.86 E-value=36 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=22.8
Q ss_pred chHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008435 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (565)
Q Consensus 387 eAi~~l~~AL~~dP~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l~ 433 (565)
+|+.++++|++. -..|++++|+.+|..|++..
T Consensus 17 kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 17 KAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHHHH
Confidence 556666666533 46688888888888888764
No 294
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.43 E-value=2.8e+02 Score=28.35 Aligned_cols=70 Identities=21% Similarity=0.102 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 401 DNINALILMGQTQLQKGLL--EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~--~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.++-|+.+||.+-...--. ..+++.|.+||.....-- .+.....|..+|-.+++.+++.||+..+-.++.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY-------~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREY-------SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHS-------TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHh-------ccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 4677777777776644322 338889999986530000 000112466688899999999999999988554
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.13 E-value=78 Score=24.84 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
.-+.+.+|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 346678899999999999999999988763
No 296
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.02 E-value=96 Score=28.67 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 403 a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
++-+|.+|.++..+++|.+|.+++.+|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999765
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.90 E-value=2.8e+02 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008435 385 KERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (565)
Q Consensus 385 ~~eAi~~l~~AL~~d--P~~a~A~~~LG~~~~~~g~~~eA~~~~~rAl~l 432 (565)
.+++...|+...... -..+..|..-|..+...|++++|.+.|+++++.
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 355888888887744 567889999999999999999999999999875
No 298
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=21.87 E-value=54 Score=20.63 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=11.2
Q ss_pred cCChHHHHHHHHHHHH
Q 008435 118 TGFPWWTIIVSSTVAL 133 (565)
Q Consensus 118 tGlpW~~aIil~ti~v 133 (565)
.| .||++|+...++-
T Consensus 5 LG-~~wlai~c~LLfs 19 (30)
T 1z65_A 5 LG-TWWVAILCMLLAS 19 (30)
T ss_dssp CS-SHHHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHh
Confidence 56 7999998776653
No 299
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.83 E-value=3.5e+02 Score=22.60 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHhh
Q 008435 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK 398 (565)
Q Consensus 368 ~~~~l~~lA~~l~~~g~~~eAi~~l~~AL~~ 398 (565)
.+..++.+|...-..|++++|+.+|..|++.
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3667888888888899999999998888764
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=20.66 E-value=3.5e+02 Score=28.15 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 008435 401 DNINALILMGQTQLQKGLL--EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (565)
Q Consensus 401 ~~a~A~~~LG~~~~~~g~~--~eA~~~~~rAl~l~~l~~~P~~~~~~~~~~~a~~~lG~a~~~~g~~~eAi~~leraa~ 477 (565)
.++-|+.+||.+-...-.. ..+++.|++||+....- ..+.....|..+|-.+++.+++.+|...+-.++.
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~-------Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTY-------YRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHH-------STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHh-------cccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4566666677665543322 34788999998753000 0011113466789999999999999999998654
No 301
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.20 E-value=1.5e+02 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHh
Q 008435 369 PKELIALSVKFLSKGDKERPIPLLQLALN 397 (565)
Q Consensus 369 ~~~l~~lA~~l~~~g~~~eAi~~l~~AL~ 397 (565)
+..+...|...-..|++++|+.+|..|++
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555444
Done!