Query 008437
Match_columns 565
No_of_seqs 456 out of 2604
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 7.1E-26 1.5E-30 270.1 30.7 280 216-501 13-314 (2102)
2 PLN03200 cellulose synthase-in 99.9 1.8E-25 4E-30 266.6 28.7 282 216-505 446-770 (2102)
3 KOG4224 Armadillo repeat prote 99.9 2.4E-25 5.1E-30 221.5 17.8 279 216-503 126-409 (550)
4 KOG0166 Karyopherin (importin) 99.9 1.7E-24 3.6E-29 229.1 24.3 282 216-502 109-396 (514)
5 KOG4224 Armadillo repeat prote 99.9 8.2E-24 1.8E-28 210.5 19.8 273 217-499 168-446 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 9.1E-22 2E-26 194.5 17.6 277 216-499 114-398 (526)
7 PF04564 U-box: U-box domain; 99.9 4.5E-23 9.9E-28 166.2 5.2 72 69-140 1-72 (73)
8 KOG0166 Karyopherin (importin) 99.9 8.9E-21 1.9E-25 200.9 22.9 278 218-499 68-351 (514)
9 COG5064 SRP1 Karyopherin (impo 99.8 2E-19 4.4E-24 178.0 14.7 276 217-498 72-355 (526)
10 PF05804 KAP: Kinesin-associat 99.8 4.1E-18 8.8E-23 189.8 24.9 270 216-498 290-563 (708)
11 PF05804 KAP: Kinesin-associat 99.8 3.9E-17 8.4E-22 182.0 24.6 275 215-504 122-481 (708)
12 smart00504 Ubox Modified RING 99.7 9.2E-18 2E-22 131.5 5.3 63 72-135 1-63 (63)
13 KOG2122 Beta-catenin-binding p 99.7 2.1E-16 4.6E-21 178.2 15.4 272 233-506 313-608 (2195)
14 KOG1048 Neural adherens juncti 99.7 7.5E-16 1.6E-20 168.3 16.3 281 217-503 234-599 (717)
15 KOG4199 Uncharacterized conser 99.6 6.6E-14 1.4E-18 139.2 23.1 276 216-497 145-442 (461)
16 KOG4199 Uncharacterized conser 99.6 1.2E-13 2.6E-18 137.4 24.1 268 225-499 115-403 (461)
17 KOG1048 Neural adherens juncti 99.6 6.3E-13 1.4E-17 145.6 23.7 281 215-501 274-686 (717)
18 PF04826 Arm_2: Armadillo-like 99.5 5E-12 1.1E-16 126.1 20.1 211 216-437 12-228 (254)
19 PF04826 Arm_2: Armadillo-like 99.4 7.5E-12 1.6E-16 124.8 19.2 195 255-458 8-206 (254)
20 KOG2122 Beta-catenin-binding p 99.4 1.5E-12 3.3E-17 147.7 13.9 225 231-460 365-604 (2195)
21 KOG1222 Kinesin associated pro 99.3 3E-11 6.6E-16 125.0 17.3 258 217-482 305-602 (791)
22 PF10508 Proteasom_PSMB: Prote 99.3 4.2E-10 9.2E-15 123.8 24.4 275 217-499 78-366 (503)
23 cd00020 ARM Armadillo/beta-cat 99.2 1.5E-10 3.3E-15 101.2 11.8 116 340-457 3-120 (120)
24 KOG1222 Kinesin associated pro 99.2 1.5E-10 3.3E-15 119.9 13.1 217 279-507 279-498 (791)
25 cd00020 ARM Armadillo/beta-cat 99.2 5.4E-10 1.2E-14 97.7 14.0 117 381-498 2-119 (120)
26 PF15227 zf-C3HC4_4: zinc fing 99.2 1.7E-11 3.8E-16 87.4 3.0 39 75-113 1-42 (42)
27 KOG4500 Rho/Rac GTPase guanine 99.1 2E-09 4.4E-14 110.5 17.1 278 219-498 90-389 (604)
28 PLN03208 E3 ubiquitin-protein 99.1 7E-11 1.5E-15 110.8 3.8 58 69-126 15-87 (193)
29 TIGR00599 rad18 DNA repair pro 99.1 1.8E-10 3.9E-15 120.5 6.5 72 67-139 21-92 (397)
30 PF10508 Proteasom_PSMB: Prote 99.0 2.2E-07 4.7E-12 102.4 26.2 279 216-500 119-421 (503)
31 KOG4642 Chaperone-dependent E3 98.9 6.5E-10 1.4E-14 106.6 4.9 76 66-141 205-280 (284)
32 PF11789 zf-Nse: Zinc-finger o 98.9 6.4E-10 1.4E-14 84.6 1.5 44 71-114 10-55 (57)
33 KOG4500 Rho/Rac GTPase guanine 98.9 1.1E-07 2.4E-12 98.0 17.4 277 220-498 227-518 (604)
34 PF03224 V-ATPase_H_N: V-ATPas 98.8 6.3E-08 1.4E-12 100.4 15.8 232 259-493 55-308 (312)
35 KOG2042 Ubiquitin fusion degra 98.8 2.9E-09 6.3E-14 120.2 4.6 111 28-139 806-937 (943)
36 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.6E-14 74.4 2.9 38 75-113 1-39 (39)
37 cd00256 VATPase_H VATPase_H, r 98.8 8.4E-07 1.8E-11 94.5 21.4 272 217-497 102-423 (429)
38 PRK09687 putative lyase; Provi 98.7 1.3E-06 2.8E-11 89.0 21.2 232 218-495 25-278 (280)
39 COG5113 UFD2 Ubiquitin fusion 98.7 1.4E-08 3.1E-13 108.1 6.0 104 35-139 797-921 (929)
40 KOG0168 Putative ubiquitin fus 98.7 1E-06 2.2E-11 97.3 19.2 256 217-481 168-437 (1051)
41 PF03224 V-ATPase_H_N: V-ATPas 98.7 3.1E-07 6.7E-12 95.2 14.5 220 219-447 61-304 (312)
42 PF13445 zf-RING_UBOX: RING-ty 98.7 9.7E-09 2.1E-13 73.3 2.1 36 75-111 1-43 (43)
43 KOG0946 ER-Golgi vesicle-tethe 98.6 5.6E-06 1.2E-10 91.1 22.4 259 216-481 22-326 (970)
44 KOG0287 Postreplication repair 98.6 1.6E-08 3.6E-13 100.4 2.6 67 71-138 22-88 (442)
45 PF00097 zf-C3HC4: Zinc finger 98.6 4.1E-08 9E-13 69.7 3.2 39 75-113 1-41 (41)
46 KOG0823 Predicted E3 ubiquitin 98.5 5.3E-08 1.1E-12 93.1 3.0 57 70-126 45-103 (230)
47 PF14835 zf-RING_6: zf-RING of 98.5 4E-08 8.7E-13 75.0 1.4 58 72-132 7-65 (65)
48 PRK13800 putative oxidoreducta 98.5 2.5E-05 5.5E-10 92.1 24.3 225 217-497 622-865 (897)
49 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.4E-07 3E-12 70.1 3.2 47 71-118 1-48 (50)
50 PHA02929 N1R/p28-like protein; 98.4 1.6E-07 3.4E-12 92.1 4.0 49 69-118 171-227 (238)
51 PRK09687 putative lyase; Provi 98.4 7.7E-06 1.7E-10 83.3 16.4 192 260-495 24-217 (280)
52 KOG2160 Armadillo/beta-catenin 98.4 2.5E-05 5.4E-10 80.0 19.3 182 229-415 95-282 (342)
53 KOG2177 Predicted E3 ubiquitin 98.4 2E-07 4.3E-12 95.3 3.5 70 69-141 10-79 (386)
54 COG5432 RAD18 RING-finger-cont 98.4 2E-07 4.2E-12 91.0 3.1 67 71-138 24-90 (391)
55 KOG0168 Putative ubiquitin fus 98.3 7.4E-06 1.6E-10 90.8 14.5 158 342-504 209-369 (1051)
56 KOG2160 Armadillo/beta-catenin 98.3 1.3E-05 2.8E-10 82.0 15.3 182 275-457 95-282 (342)
57 cd00162 RING RING-finger (Real 98.3 5.9E-07 1.3E-11 64.3 3.7 44 74-117 1-45 (45)
58 PRK13800 putative oxidoreducta 98.3 5E-05 1.1E-09 89.7 21.8 227 216-496 652-896 (897)
59 KOG4646 Uncharacterized conser 98.3 3.7E-06 8.1E-11 74.3 9.0 152 343-495 15-166 (173)
60 cd00256 VATPase_H VATPase_H, r 98.3 5.1E-05 1.1E-09 81.0 18.9 224 217-446 54-297 (429)
61 PF13639 zf-RING_2: Ring finge 98.2 4.3E-07 9.4E-12 65.5 1.8 40 74-114 2-44 (44)
62 KOG3678 SARM protein (with ste 98.2 2.8E-05 6E-10 81.3 15.2 266 216-503 180-456 (832)
63 KOG2973 Uncharacterized conser 98.2 0.00058 1.3E-08 68.5 22.4 268 218-499 5-315 (353)
64 smart00184 RING Ring finger. E 98.2 1.6E-06 3.5E-11 59.8 3.3 39 75-113 1-39 (39)
65 KOG4646 Uncharacterized conser 98.2 1.6E-05 3.5E-10 70.3 9.9 129 306-436 17-149 (173)
66 KOG0317 Predicted E3 ubiquitin 98.1 2.2E-06 4.7E-11 84.6 3.7 56 66-122 232-288 (293)
67 KOG0289 mRNA splicing factor [ 98.1 4.5E-06 9.8E-11 86.1 6.0 52 73-125 1-53 (506)
68 KOG0320 Predicted E3 ubiquitin 98.1 1.6E-06 3.5E-11 79.5 2.4 53 71-124 130-184 (187)
69 TIGR00570 cdk7 CDK-activating 98.0 5.7E-06 1.2E-10 83.6 5.8 63 71-133 2-73 (309)
70 COG5222 Uncharacterized conser 98.0 6.3E-06 1.4E-10 80.9 5.0 67 73-139 275-343 (427)
71 PF01602 Adaptin_N: Adaptin N 98.0 0.00022 4.8E-09 79.0 17.5 137 345-500 232-370 (526)
72 PF01602 Adaptin_N: Adaptin N 98.0 0.00034 7.4E-09 77.5 18.5 248 217-497 115-404 (526)
73 PHA02926 zinc finger-like prot 97.9 6.5E-06 1.4E-10 78.3 3.3 56 68-125 166-235 (242)
74 KOG1293 Proteins containing ar 97.9 9.7E-05 2.1E-09 80.4 12.3 128 340-468 415-544 (678)
75 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0019 4.2E-08 67.4 21.0 274 216-497 65-436 (442)
76 KOG0311 Predicted E3 ubiquitin 97.9 2.2E-06 4.7E-11 86.5 -0.4 69 67-135 38-108 (381)
77 KOG1293 Proteins containing ar 97.9 0.0002 4.4E-09 78.0 14.0 203 296-500 316-534 (678)
78 PF05536 Neurochondrin: Neuroc 97.9 0.00023 5.1E-09 79.0 14.6 152 307-460 7-171 (543)
79 KOG2171 Karyopherin (importin) 97.8 0.002 4.4E-08 74.5 22.1 155 345-504 349-509 (1075)
80 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0004 8.6E-09 77.0 15.6 212 261-480 24-264 (970)
81 PF14634 zf-RING_5: zinc-RING 97.8 1.8E-05 3.8E-10 57.1 2.9 41 74-115 1-44 (44)
82 PF05536 Neurochondrin: Neuroc 97.8 0.0012 2.6E-08 73.5 18.0 235 260-500 6-262 (543)
83 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0079 1.7E-07 63.7 23.1 272 220-500 29-365 (371)
84 KOG4159 Predicted E3 ubiquitin 97.7 2.4E-05 5.2E-10 82.4 3.9 72 66-138 78-154 (398)
85 KOG0297 TNF receptor-associate 97.7 2.3E-05 4.9E-10 83.5 3.6 69 69-138 18-88 (391)
86 COG5574 PEX10 RING-finger-cont 97.7 3.1E-05 6.8E-10 75.6 3.3 55 66-120 208-264 (271)
87 PF00514 Arm: Armadillo/beta-c 97.6 5.1E-05 1.1E-09 53.7 3.1 40 376-415 2-41 (41)
88 PF14664 RICTOR_N: Rapamycin-i 97.6 0.0061 1.3E-07 64.6 19.6 253 240-502 6-272 (371)
89 PTZ00429 beta-adaptin; Provisi 97.6 0.02 4.3E-07 65.9 24.5 257 216-500 68-327 (746)
90 KOG2660 Locus-specific chromos 97.6 4.1E-05 8.8E-10 77.1 2.6 66 69-135 12-82 (331)
91 KOG2164 Predicted E3 ubiquitin 97.5 5.2E-05 1.1E-09 80.4 3.2 70 72-141 186-263 (513)
92 PF00514 Arm: Armadillo/beta-c 97.5 0.0001 2.2E-09 52.2 3.4 40 248-291 1-40 (41)
93 PF12678 zf-rbx1: RING-H2 zinc 97.5 9.4E-05 2E-09 59.5 3.6 39 75-114 22-73 (73)
94 KOG2973 Uncharacterized conser 97.5 0.0023 5E-08 64.4 13.6 206 262-476 6-224 (353)
95 KOG0978 E3 ubiquitin ligase in 97.4 4.8E-05 1.1E-09 84.4 1.6 54 71-124 642-695 (698)
96 KOG1789 Endocytosis protein RM 97.4 0.0082 1.8E-07 68.6 18.4 241 235-481 1743-2141(2235)
97 KOG2734 Uncharacterized conser 97.4 0.048 1E-06 57.5 22.6 241 216-459 125-402 (536)
98 PTZ00429 beta-adaptin; Provisi 97.3 0.039 8.4E-07 63.5 23.6 249 218-498 34-284 (746)
99 KOG2171 Karyopherin (importin) 97.3 0.0036 7.9E-08 72.5 14.9 228 220-457 352-594 (1075)
100 PF10165 Ric8: Guanine nucleot 97.3 0.02 4.3E-07 62.4 20.0 263 237-500 1-338 (446)
101 TIGR02270 conserved hypothetic 97.3 0.03 6.6E-07 60.1 20.8 221 217-501 55-298 (410)
102 KOG2734 Uncharacterized conser 97.2 0.028 6.1E-07 59.2 18.7 235 237-478 104-369 (536)
103 COG5369 Uncharacterized conser 97.2 0.002 4.2E-08 69.0 10.0 195 284-479 410-617 (743)
104 KOG3678 SARM protein (with ste 97.2 0.0042 9E-08 65.4 12.2 171 298-472 173-350 (832)
105 KOG2759 Vacuolar H+-ATPase V1 97.1 0.028 6E-07 59.0 17.7 171 218-394 116-298 (442)
106 PF10165 Ric8: Guanine nucleot 97.1 0.028 6.1E-07 61.2 18.9 240 229-470 44-348 (446)
107 PF12348 CLASP_N: CLASP N term 97.1 0.0036 7.8E-08 61.6 10.6 182 229-421 19-212 (228)
108 KOG0212 Uncharacterized conser 96.9 0.026 5.7E-07 61.0 15.0 229 217-457 209-444 (675)
109 PF13646 HEAT_2: HEAT repeats; 96.8 0.0019 4.1E-08 53.2 5.1 86 346-453 1-88 (88)
110 smart00185 ARM Armadillo/beta- 96.8 0.0015 3.3E-08 45.5 3.8 39 335-374 3-41 (41)
111 smart00185 ARM Armadillo/beta- 96.8 0.0023 4.9E-08 44.6 4.3 40 376-415 2-41 (41)
112 COG5369 Uncharacterized conser 96.7 0.0096 2.1E-07 63.9 10.3 258 236-498 408-740 (743)
113 KOG2023 Nuclear transport rece 96.7 0.041 8.8E-07 60.6 15.0 275 215-504 127-468 (885)
114 KOG1789 Endocytosis protein RM 96.6 0.68 1.5E-05 53.8 24.2 138 361-501 1741-1885(2235)
115 KOG1813 Predicted E3 ubiquitin 96.6 0.0011 2.4E-08 65.9 2.4 65 65-133 236-300 (313)
116 KOG2879 Predicted E3 ubiquitin 96.6 0.0031 6.8E-08 62.0 5.4 50 69-118 236-287 (298)
117 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0018 3.8E-08 65.4 3.5 64 70-135 111-182 (260)
118 KOG0824 Predicted E3 ubiquitin 96.6 0.0011 2.4E-08 66.0 1.9 48 74-121 9-56 (324)
119 KOG4628 Predicted E3 ubiquitin 96.5 0.002 4.4E-08 66.4 3.7 46 73-118 230-278 (348)
120 KOG3036 Protein involved in ce 96.5 0.089 1.9E-06 51.6 14.5 178 320-498 96-290 (293)
121 PF12861 zf-Apc11: Anaphase-pr 96.5 0.0024 5.2E-08 52.2 3.3 46 73-118 33-82 (85)
122 PF12348 CLASP_N: CLASP N term 96.5 0.016 3.5E-07 56.9 9.9 152 344-501 53-208 (228)
123 PF11841 DUF3361: Domain of un 96.5 0.048 1E-06 50.4 12.1 121 340-460 7-134 (160)
124 KOG4413 26S proteasome regulat 96.5 0.11 2.4E-06 52.8 15.5 248 230-482 184-464 (524)
125 PF09759 Atx10homo_assoc: Spin 96.5 0.0091 2E-07 51.0 6.7 68 234-303 3-70 (102)
126 KOG0802 E3 ubiquitin ligase [P 96.4 0.0012 2.6E-08 73.6 1.5 46 71-117 290-340 (543)
127 KOG1002 Nucleotide excision re 96.3 0.0017 3.8E-08 68.8 1.7 50 71-120 535-588 (791)
128 KOG1242 Protein containing ada 96.3 0.27 5.9E-06 54.0 18.2 218 217-457 97-324 (569)
129 KOG1824 TATA-binding protein-i 96.2 0.28 6E-06 56.3 18.3 273 216-504 6-291 (1233)
130 COG5152 Uncharacterized conser 96.2 0.0024 5.3E-08 59.6 1.9 44 73-117 197-240 (259)
131 KOG1059 Vesicle coat complex A 96.2 0.52 1.1E-05 52.7 19.6 212 217-460 182-404 (877)
132 KOG1517 Guanine nucleotide bin 96.1 0.17 3.6E-06 58.6 16.2 238 215-460 471-735 (1387)
133 KOG3039 Uncharacterized conser 96.1 0.0039 8.4E-08 60.3 3.0 54 71-125 220-277 (303)
134 PF13646 HEAT_2: HEAT repeats; 96.1 0.011 2.4E-07 48.5 5.4 85 388-494 1-87 (88)
135 KOG1059 Vesicle coat complex A 96.1 0.21 4.5E-06 55.8 16.3 218 216-459 144-367 (877)
136 KOG3039 Uncharacterized conser 96.1 0.0039 8.5E-08 60.2 2.8 36 69-104 40-75 (303)
137 PF09759 Atx10homo_assoc: Spin 96.0 0.03 6.5E-07 47.9 7.7 65 403-468 3-70 (102)
138 PF11841 DUF3361: Domain of un 96.0 0.09 1.9E-06 48.6 11.3 117 380-498 5-130 (160)
139 KOG1242 Protein containing ada 96.0 0.44 9.6E-06 52.4 18.3 229 255-501 209-447 (569)
140 KOG4413 26S proteasome regulat 96.0 0.68 1.5E-05 47.4 18.0 240 224-470 90-345 (524)
141 KOG0826 Predicted E3 ubiquitin 96.0 0.0031 6.7E-08 63.5 1.6 55 63-118 291-346 (357)
142 KOG4151 Myosin assembly protei 96.0 0.12 2.5E-06 58.4 13.9 244 243-497 488-739 (748)
143 COG1413 FOG: HEAT repeat [Ener 96.0 0.36 7.7E-06 50.3 17.1 154 259-459 43-211 (335)
144 KOG2979 Protein involved in DN 95.9 0.0061 1.3E-07 59.7 3.4 62 72-133 176-243 (262)
145 TIGR02270 conserved hypothetic 95.9 0.24 5.2E-06 53.3 15.6 116 307-455 88-205 (410)
146 KOG1517 Guanine nucleotide bin 95.9 0.22 4.7E-06 57.7 15.5 218 280-497 484-730 (1387)
147 COG5243 HRD1 HRD ubiquitin lig 95.8 0.0065 1.4E-07 62.1 3.0 46 71-117 286-344 (491)
148 COG1413 FOG: HEAT repeat [Ener 95.8 1.3 2.7E-05 46.2 20.3 164 216-415 74-242 (335)
149 KOG4367 Predicted Zn-finger pr 95.7 0.0038 8.2E-08 64.7 1.0 35 70-104 2-36 (699)
150 PF04063 DUF383: Domain of unk 95.6 0.067 1.5E-06 51.3 8.9 145 359-504 9-184 (192)
151 COG5540 RING-finger-containing 95.2 0.014 3.1E-07 58.2 3.2 47 73-119 324-373 (374)
152 COG5240 SEC21 Vesicle coat com 95.2 1.8 3.9E-05 47.5 18.9 57 440-499 499-555 (898)
153 PF02891 zf-MIZ: MIZ/SP-RING z 95.2 0.019 4E-07 42.5 3.0 45 72-116 2-50 (50)
154 KOG0212 Uncharacterized conser 95.2 1.3 2.8E-05 48.5 17.6 276 215-500 123-407 (675)
155 KOG1062 Vesicle coat complex A 95.1 0.85 1.8E-05 51.7 16.7 139 346-496 315-467 (866)
156 KOG3113 Uncharacterized conser 94.9 0.019 4.2E-07 55.8 2.9 51 70-123 109-163 (293)
157 PF13513 HEAT_EZ: HEAT-like re 94.9 0.036 7.7E-07 41.5 3.8 55 359-413 1-55 (55)
158 KOG3036 Protein involved in ce 94.9 4.2 9.1E-05 40.3 18.7 233 217-457 27-291 (293)
159 KOG1241 Karyopherin (importin) 94.6 2 4.4E-05 48.6 17.8 281 213-504 360-673 (859)
160 COG5231 VMA13 Vacuolar H+-ATPa 94.6 0.4 8.6E-06 48.9 11.4 222 276-498 162-427 (432)
161 PF04078 Rcd1: Cell differenti 94.6 0.52 1.1E-05 47.0 12.2 220 276-498 8-261 (262)
162 KOG0213 Splicing factor 3b, su 94.5 0.2 4.2E-06 56.1 9.8 148 345-495 800-950 (1172)
163 PF13764 E3_UbLigase_R4: E3 ub 94.5 3.3 7.3E-05 48.1 19.9 221 254-478 112-384 (802)
164 KOG2817 Predicted E3 ubiquitin 94.4 0.026 5.7E-07 58.6 2.8 43 72-114 334-381 (394)
165 PF06371 Drf_GBD: Diaphanous G 94.2 0.14 3E-06 48.6 7.1 78 379-456 100-186 (187)
166 PF11698 V-ATPase_H_C: V-ATPas 94.1 0.14 2.9E-06 45.1 6.2 77 211-291 38-114 (119)
167 PF07814 WAPL: Wings apart-lik 94.0 0.91 2E-05 48.1 13.4 242 216-470 21-312 (361)
168 KOG2023 Nuclear transport rece 94.0 0.42 9.2E-06 53.0 10.8 168 258-435 127-306 (885)
169 PF13513 HEAT_EZ: HEAT-like re 93.8 0.12 2.6E-06 38.6 4.7 55 442-497 1-55 (55)
170 PF08569 Mo25: Mo25-like; Int 93.7 1.3 2.9E-05 46.2 13.8 200 255-459 72-285 (335)
171 KOG2999 Regulator of Rac1, req 93.7 0.67 1.5E-05 50.4 11.5 152 345-498 84-241 (713)
172 PF04078 Rcd1: Cell differenti 93.5 2 4.3E-05 43.0 13.7 194 230-425 8-228 (262)
173 KOG2611 Neurochondrin/leucine- 93.3 4.3 9.2E-05 43.8 16.5 175 277-454 25-222 (698)
174 KOG2259 Uncharacterized conser 93.3 1.1 2.4E-05 49.8 12.5 219 218-459 236-476 (823)
175 PF11793 FANCL_C: FANCL C-term 93.1 0.027 5.8E-07 44.9 0.1 47 72-118 2-66 (70)
176 KOG1078 Vesicle coat complex C 93.0 5.3 0.00011 45.5 17.5 70 258-332 240-311 (865)
177 KOG1734 Predicted RING-contain 93.0 0.022 4.8E-07 55.9 -0.7 53 71-123 223-286 (328)
178 KOG1241 Karyopherin (importin) 93.0 2.2 4.7E-05 48.3 14.4 275 216-504 129-440 (859)
179 KOG2259 Uncharacterized conser 92.9 0.71 1.5E-05 51.3 10.4 211 221-458 203-440 (823)
180 COG5096 Vesicle coat complex, 92.8 2.8 6.1E-05 48.1 15.5 68 345-415 128-195 (757)
181 KOG0883 Cyclophilin type, U bo 92.8 0.077 1.7E-06 54.8 2.9 56 68-125 37-92 (518)
182 PF12460 MMS19_C: RNAPII trans 92.8 6.1 0.00013 42.6 17.7 193 216-417 189-396 (415)
183 KOG0804 Cytoplasmic Zn-finger 92.7 0.055 1.2E-06 56.9 1.7 43 72-117 175-221 (493)
184 KOG1645 RING-finger-containing 92.7 0.062 1.3E-06 55.9 1.9 60 73-132 5-70 (463)
185 KOG1061 Vesicle coat complex A 92.7 1.1 2.4E-05 50.6 11.7 240 216-483 49-293 (734)
186 PF04063 DUF383: Domain of unk 92.3 0.46 9.9E-06 45.7 7.3 83 344-426 52-143 (192)
187 KOG1061 Vesicle coat complex A 92.3 2 4.4E-05 48.6 13.2 70 217-294 122-191 (734)
188 PF12031 DUF3518: Domain of un 92.3 0.42 9.2E-06 47.0 7.0 87 401-487 139-233 (257)
189 KOG1077 Vesicle coat complex A 92.2 17 0.00037 41.2 19.7 70 429-501 330-400 (938)
190 KOG1248 Uncharacterized conser 92.2 3.6 7.7E-05 48.8 15.4 212 275-497 666-896 (1176)
191 COG5181 HSH155 U2 snRNP splice 92.1 0.29 6.2E-06 53.8 6.2 151 345-498 605-758 (975)
192 KOG1062 Vesicle coat complex A 92.0 17 0.00037 41.7 19.8 253 223-498 114-414 (866)
193 COG5627 MMS21 DNA repair prote 91.9 0.15 3.2E-06 49.3 3.4 60 72-131 189-252 (275)
194 COG5231 VMA13 Vacuolar H+-ATPa 91.7 4.1 9E-05 41.8 13.3 221 230-456 162-427 (432)
195 KOG3800 Predicted E3 ubiquitin 91.6 0.12 2.6E-06 51.7 2.5 46 74-119 2-52 (300)
196 PF12755 Vac14_Fab1_bd: Vacuol 91.6 0.71 1.5E-05 39.2 6.9 68 428-498 27-96 (97)
197 KOG1077 Vesicle coat complex A 91.5 20 0.00043 40.7 19.2 79 376-459 321-400 (938)
198 PF12031 DUF3518: Domain of un 90.9 0.56 1.2E-05 46.1 6.2 81 360-440 139-228 (257)
199 smart00744 RINGv The RING-vari 90.8 0.28 6E-06 36.1 3.1 40 75-114 2-49 (49)
200 PF12755 Vac14_Fab1_bd: Vacuol 90.8 0.9 1.9E-05 38.6 6.7 91 362-455 3-94 (97)
201 PF08045 CDC14: Cell division 90.7 1.2 2.5E-05 44.8 8.4 84 233-319 107-190 (257)
202 KOG1943 Beta-tubulin folding c 90.6 19 0.00042 42.6 19.0 247 216-491 341-603 (1133)
203 COG5109 Uncharacterized conser 90.2 0.18 3.8E-06 50.8 2.2 43 72-114 336-383 (396)
204 COG5096 Vesicle coat complex, 90.1 5 0.00011 46.1 13.8 67 429-498 128-194 (757)
205 KOG1824 TATA-binding protein-i 89.9 7.8 0.00017 45.1 14.8 223 217-460 48-289 (1233)
206 KOG1058 Vesicle coat complex C 89.7 6.9 0.00015 44.5 14.0 212 230-460 219-466 (948)
207 KOG2137 Protein kinase [Signal 89.6 4.7 0.0001 45.5 12.8 177 306-490 350-528 (700)
208 COG5209 RCD1 Uncharacterized p 89.6 3.1 6.7E-05 40.6 9.9 177 321-498 118-311 (315)
209 PF05004 IFRD: Interferon-rela 89.6 12 0.00027 38.7 15.4 189 216-413 43-255 (309)
210 KOG0825 PHD Zn-finger protein 89.0 0.095 2.1E-06 58.5 -0.8 46 73-119 124-172 (1134)
211 PF05004 IFRD: Interferon-rela 88.8 8.3 0.00018 39.9 13.4 156 345-503 87-261 (309)
212 KOG1060 Vesicle coat complex A 88.5 22 0.00047 40.9 16.8 207 219-457 38-246 (968)
213 KOG4692 Predicted E3 ubiquitin 88.5 0.31 6.7E-06 49.8 2.5 47 71-118 421-467 (489)
214 KOG2611 Neurochondrin/leucine- 88.3 29 0.00063 37.7 16.8 187 221-413 16-223 (698)
215 KOG0827 Predicted E3 ubiquitin 88.3 0.28 6E-06 50.9 2.1 46 71-118 3-56 (465)
216 KOG2999 Regulator of Rac1, req 88.3 14 0.0003 40.7 14.6 150 310-459 88-244 (713)
217 KOG4464 Signaling protein RIC- 88.2 22 0.00047 37.9 15.6 161 215-376 44-233 (532)
218 COG5181 HSH155 U2 snRNP splice 87.9 8.6 0.00019 42.8 13.0 147 217-374 605-759 (975)
219 PF14668 RICTOR_V: Rapamycin-i 87.9 1.5 3.3E-05 35.1 5.6 65 362-426 4-69 (73)
220 PF14447 Prok-RING_4: Prokaryo 87.9 0.32 7E-06 36.4 1.6 46 73-121 8-53 (55)
221 KOG4172 Predicted E3 ubiquitin 87.6 0.16 3.5E-06 37.6 -0.1 44 74-117 9-53 (62)
222 PF14570 zf-RING_4: RING/Ubox 87.6 0.43 9.3E-06 34.9 2.1 42 75-117 1-47 (48)
223 KOG1001 Helicase-like transcri 87.5 0.12 2.7E-06 58.7 -1.1 46 73-119 455-501 (674)
224 PF13764 E3_UbLigase_R4: E3 ub 87.4 6.4 0.00014 45.9 12.5 130 339-468 112-269 (802)
225 COG5215 KAP95 Karyopherin (imp 87.3 21 0.00045 39.6 15.3 244 230-494 18-287 (858)
226 KOG4535 HEAT and armadillo rep 87.2 1 2.2E-05 48.4 5.3 102 358-459 497-605 (728)
227 KOG0213 Splicing factor 3b, su 86.9 12 0.00026 42.6 13.4 146 218-374 801-954 (1172)
228 KOG1039 Predicted E3 ubiquitin 86.8 0.42 9.1E-06 49.8 2.4 48 71-118 160-221 (344)
229 PF05918 API5: Apoptosis inhib 86.7 17 0.00037 40.6 14.8 132 216-371 23-159 (556)
230 COG5209 RCD1 Uncharacterized p 86.7 20 0.00044 35.1 13.4 200 219-423 50-276 (315)
231 KOG2274 Predicted importin 9 [ 86.5 20 0.00043 41.7 15.2 155 343-500 529-690 (1005)
232 PF12717 Cnd1: non-SMC mitotic 86.3 4.1 8.9E-05 38.4 8.7 93 399-501 1-94 (178)
233 PF12460 MMS19_C: RNAPII trans 86.2 21 0.00046 38.5 15.3 130 345-478 272-414 (415)
234 COG5240 SEC21 Vesicle coat com 86.2 26 0.00056 38.9 15.3 219 265-500 266-537 (898)
235 KOG3161 Predicted E3 ubiquitin 86.2 0.37 8E-06 52.9 1.7 61 71-135 10-79 (861)
236 PF08045 CDC14: Cell division 86.1 8.3 0.00018 38.7 11.0 97 401-498 106-206 (257)
237 PF08569 Mo25: Mo25-like; Int 86.0 33 0.00073 35.9 16.0 161 339-503 71-242 (335)
238 PF02985 HEAT: HEAT repeat; I 85.3 1.3 2.8E-05 28.9 3.4 28 346-374 2-29 (31)
239 KOG4653 Uncharacterized conser 84.6 41 0.00089 39.1 16.5 230 216-498 727-963 (982)
240 PF02985 HEAT: HEAT repeat; I 84.3 1.9 4.1E-05 28.1 3.8 28 430-457 2-29 (31)
241 COG5215 KAP95 Karyopherin (imp 84.1 71 0.0015 35.7 17.4 147 216-374 321-479 (858)
242 KOG4151 Myosin assembly protei 84.1 2.9 6.2E-05 47.6 7.4 156 233-393 558-719 (748)
243 KOG1058 Vesicle coat complex C 84.1 19 0.0004 41.2 13.4 182 217-416 135-347 (948)
244 PF11698 V-ATPase_H_C: V-ATPas 83.8 2.8 6E-05 37.0 5.7 71 428-498 43-114 (119)
245 COG5219 Uncharacterized conser 83.6 0.5 1.1E-05 54.1 1.3 44 74-117 1471-1522(1525)
246 KOG1785 Tyrosine kinase negati 83.6 0.5 1.1E-05 49.1 1.1 45 74-118 371-416 (563)
247 PF12717 Cnd1: non-SMC mitotic 83.5 13 0.00028 35.0 10.8 93 358-458 1-93 (178)
248 KOG0828 Predicted E3 ubiquitin 83.4 0.62 1.3E-05 49.8 1.8 51 69-119 568-635 (636)
249 KOG0396 Uncharacterized conser 83.4 0.55 1.2E-05 48.6 1.3 49 72-120 330-381 (389)
250 PF08324 PUL: PUL domain; Int 83.0 7.4 0.00016 39.1 9.5 134 358-493 123-268 (268)
251 PF06025 DUF913: Domain of Unk 82.2 25 0.00054 37.6 13.4 93 305-397 106-207 (379)
252 KOG1240 Protein kinase contain 81.7 24 0.00053 42.3 13.7 108 345-457 618-725 (1431)
253 KOG1248 Uncharacterized conser 81.7 12 0.00025 44.7 11.2 182 221-415 702-898 (1176)
254 PF04641 Rtf2: Rtf2 RING-finge 81.3 1.6 3.4E-05 44.1 3.8 36 71-106 33-69 (260)
255 KOG1788 Uncharacterized conser 81.3 39 0.00086 40.1 14.7 229 216-458 720-983 (2799)
256 COG5098 Chromosome condensatio 81.2 3.9 8.5E-05 45.9 6.9 149 344-497 240-413 (1128)
257 PF05918 API5: Apoptosis inhib 80.9 8.2 0.00018 43.0 9.3 120 358-495 35-158 (556)
258 PRK14707 hypothetical protein; 80.3 1.4E+02 0.003 38.6 19.6 236 215-457 372-614 (2710)
259 KOG0567 HEAT repeat-containing 80.2 70 0.0015 32.3 15.9 200 255-499 63-280 (289)
260 KOG0301 Phospholipase A2-activ 80.2 27 0.00059 39.3 12.8 159 222-393 550-723 (745)
261 PF14500 MMS19_N: Dos2-interac 80.0 56 0.0012 33.0 14.4 209 224-457 7-237 (262)
262 COG5194 APC11 Component of SCF 79.7 1.3 2.8E-05 35.7 2.0 43 74-117 33-80 (88)
263 KOG1493 Anaphase-promoting com 79.5 0.75 1.6E-05 36.7 0.6 47 72-118 31-81 (84)
264 COG5175 MOT2 Transcriptional r 78.9 1.2 2.6E-05 45.3 2.0 50 71-121 14-67 (480)
265 KOG0211 Protein phosphatase 2A 78.8 39 0.00084 39.3 14.2 221 217-452 237-461 (759)
266 PF06371 Drf_GBD: Diaphanous G 77.9 5.6 0.00012 37.5 6.2 76 422-498 102-186 (187)
267 PF08324 PUL: PUL domain; Int 77.6 7 0.00015 39.3 7.2 172 217-391 64-249 (268)
268 KOG1788 Uncharacterized conser 77.5 57 0.0012 38.9 14.5 252 239-501 664-984 (2799)
269 KOG1820 Microtubule-associated 77.0 71 0.0015 37.5 15.7 182 219-415 256-443 (815)
270 KOG0915 Uncharacterized conser 76.9 1.5E+02 0.0033 36.9 18.4 264 221-498 961-1264(1702)
271 KOG2930 SCF ubiquitin ligase, 76.8 1.6 3.6E-05 36.8 1.9 27 89-116 80-106 (114)
272 KOG1967 DNA repair/transcripti 76.6 19 0.00041 42.0 10.6 182 307-493 817-1018(1030)
273 KOG1571 Predicted E3 ubiquitin 76.5 1.7 3.7E-05 45.0 2.3 48 66-117 299-346 (355)
274 PF03002 Somatostatin: Somatos 76.4 1.1 2.5E-05 25.3 0.6 14 545-559 3-16 (18)
275 PF11701 UNC45-central: Myosin 75.9 9.7 0.00021 35.2 7.0 99 216-318 42-141 (157)
276 cd03561 VHS VHS domain family; 75.7 14 0.0003 33.1 7.8 75 216-292 37-112 (133)
277 KOG4464 Signaling protein RIC- 75.7 33 0.00072 36.6 11.3 105 230-334 110-233 (532)
278 PF14225 MOR2-PAG1_C: Cell mor 75.4 20 0.00044 36.2 9.6 67 344-415 188-254 (262)
279 cd03569 VHS_Hrs_Vps27p VHS dom 75.2 10 0.00022 34.6 6.8 72 216-291 41-113 (142)
280 KOG1240 Protein kinase contain 75.0 30 0.00066 41.6 11.9 261 229-504 435-730 (1431)
281 KOG3665 ZYG-1-like serine/thre 72.8 37 0.0008 39.3 12.1 192 286-496 494-694 (699)
282 KOG4362 Transcriptional regula 72.5 1.3 2.9E-05 49.8 0.4 64 72-135 21-86 (684)
283 PF06416 DUF1076: Protein of u 72.4 4.2 9.2E-05 35.0 3.3 55 65-120 33-93 (113)
284 PF11701 UNC45-central: Myosin 72.1 13 0.00029 34.3 6.9 143 346-494 5-154 (157)
285 PF12530 DUF3730: Protein of u 71.7 73 0.0016 31.4 12.6 137 346-498 2-150 (234)
286 PF14668 RICTOR_V: Rapamycin-i 71.6 18 0.00039 29.0 6.6 66 403-470 4-70 (73)
287 KOG1243 Protein kinase [Genera 69.7 47 0.001 37.7 11.5 254 221-497 259-513 (690)
288 KOG2025 Chromosome condensatio 69.3 2E+02 0.0043 33.2 16.0 126 260-393 82-214 (892)
289 cd03568 VHS_STAM VHS domain fa 68.7 23 0.00049 32.4 7.5 75 428-502 37-113 (144)
290 PRK14707 hypothetical protein; 68.3 3.7E+02 0.0081 35.1 19.2 274 216-498 205-487 (2710)
291 PF05290 Baculo_IE-1: Baculovi 68.2 5.1 0.00011 35.7 3.0 49 71-119 79-133 (140)
292 PF12719 Cnd3: Nuclear condens 68.1 1.5E+02 0.0032 30.4 16.2 175 275-459 39-235 (298)
293 KOG3665 ZYG-1-like serine/thre 68.0 84 0.0018 36.4 13.6 167 240-410 494-692 (699)
294 cd03561 VHS VHS domain family; 68.0 27 0.0006 31.2 7.9 75 429-503 38-116 (133)
295 KOG4185 Predicted E3 ubiquitin 67.9 4.5 9.7E-05 41.5 3.1 51 85-135 22-77 (296)
296 PF10363 DUF2435: Protein of u 67.8 15 0.00033 30.8 5.7 70 216-292 3-72 (92)
297 KOG0414 Chromosome condensatio 67.5 32 0.00069 41.3 9.9 139 345-498 920-1063(1251)
298 smart00288 VHS Domain present 67.4 18 0.00039 32.4 6.6 73 216-291 37-110 (133)
299 KOG0567 HEAT repeat-containing 66.9 1.5E+02 0.0032 30.0 14.4 93 343-457 186-280 (289)
300 PF14353 CpXC: CpXC protein 66.7 3.5 7.5E-05 36.7 1.8 47 72-118 1-49 (128)
301 PF06025 DUF913: Domain of Unk 65.8 98 0.0021 33.1 12.8 126 343-469 105-244 (379)
302 KOG0414 Chromosome condensatio 65.8 96 0.0021 37.5 13.3 107 388-499 314-428 (1251)
303 PF10272 Tmpp129: Putative tra 65.7 4.5 9.8E-05 42.5 2.6 36 87-122 303-355 (358)
304 KOG1967 DNA repair/transcripti 64.7 53 0.0012 38.5 10.8 145 305-452 867-1019(1030)
305 KOG2025 Chromosome condensatio 64.3 1.1E+02 0.0024 35.0 12.9 107 219-336 88-194 (892)
306 cd03568 VHS_STAM VHS domain fa 64.3 26 0.00057 31.9 7.1 72 216-291 37-109 (144)
307 smart00638 LPD_N Lipoprotein N 64.2 2E+02 0.0044 32.3 15.7 139 306-460 358-512 (574)
308 PF05605 zf-Di19: Drought indu 63.9 17 0.00038 27.0 4.9 38 71-115 1-39 (54)
309 KOG3002 Zn finger protein [Gen 63.8 6.6 0.00014 40.4 3.3 60 69-135 45-105 (299)
310 cd03569 VHS_Hrs_Vps27p VHS dom 63.5 36 0.00077 31.0 7.7 74 428-501 41-116 (142)
311 PF14446 Prok-RING_1: Prokaryo 63.4 5.7 0.00012 29.8 2.0 27 72-98 5-35 (54)
312 PLN02189 cellulose synthase 63.4 5.9 0.00013 46.9 3.2 46 73-118 35-87 (1040)
313 KOG0915 Uncharacterized conser 63.3 2.4E+02 0.0052 35.3 16.1 262 216-500 817-1111(1702)
314 KOG2032 Uncharacterized conser 63.2 36 0.00079 37.1 8.7 114 343-457 253-371 (533)
315 PF11707 Npa1: Ribosome 60S bi 62.6 2E+02 0.0043 30.0 19.8 180 219-417 30-239 (330)
316 PF00790 VHS: VHS domain; Int 61.8 24 0.00052 31.8 6.4 73 216-291 42-117 (140)
317 PLN02195 cellulose synthase A 61.6 6.4 0.00014 46.3 3.1 45 74-118 8-59 (977)
318 PF10363 DUF2435: Protein of u 61.3 18 0.00039 30.3 5.0 69 390-460 7-75 (92)
319 KOG0298 DEAD box-containing he 60.8 2.7 5.8E-05 50.2 -0.1 44 70-114 1151-1195(1394)
320 PF08167 RIX1: rRNA processing 60.6 31 0.00067 32.1 7.0 109 387-498 26-142 (165)
321 cd03572 ENTH_epsin_related ENT 60.2 58 0.0013 28.9 8.2 71 429-499 39-119 (122)
322 KOG0825 PHD Zn-finger protein 60.1 10 0.00023 43.1 4.2 42 64-105 88-136 (1134)
323 KOG1820 Microtubule-associated 59.7 1.2E+02 0.0027 35.6 12.9 145 343-494 293-438 (815)
324 PF11865 DUF3385: Domain of un 59.3 63 0.0014 30.0 8.8 143 344-495 10-153 (160)
325 KOG1943 Beta-tubulin folding c 59.1 1E+02 0.0022 36.8 12.0 145 344-498 341-499 (1133)
326 PF12719 Cnd3: Nuclear condens 58.6 1.1E+02 0.0024 31.3 11.4 106 386-496 26-140 (298)
327 COG3813 Uncharacterized protei 58.5 9.7 0.00021 30.1 2.6 36 89-127 26-61 (84)
328 KOG0211 Protein phosphatase 2A 57.5 1.6E+02 0.0035 34.4 13.3 264 217-503 83-349 (759)
329 KOG2956 CLIP-associating prote 56.8 3E+02 0.0065 30.2 14.4 168 277-457 301-477 (516)
330 KOG1814 Predicted E3 ubiquitin 56.4 12 0.00026 39.6 3.7 59 71-133 183-251 (445)
331 PF07191 zinc-ribbons_6: zinc- 56.2 1.5 3.1E-05 34.7 -2.3 41 72-118 1-41 (70)
332 KOG2114 Vacuolar assembly/sort 56.2 8.6 0.00019 44.2 2.8 41 71-115 839-880 (933)
333 cd03567 VHS_GGA VHS domain fam 56.0 53 0.0012 29.8 7.5 73 428-500 38-117 (139)
334 cd03567 VHS_GGA VHS domain fam 55.7 50 0.0011 30.0 7.2 75 216-291 38-115 (139)
335 PLN02436 cellulose synthase A 55.6 9.7 0.00021 45.3 3.2 46 73-118 37-89 (1094)
336 smart00531 TFIIE Transcription 55.0 6.2 0.00014 36.1 1.3 38 70-119 97-135 (147)
337 KOG4739 Uncharacterized protei 54.9 5.2 0.00011 39.3 0.8 40 83-125 15-55 (233)
338 PF01347 Vitellogenin_N: Lipop 54.7 1.8E+02 0.0039 32.9 13.4 92 343-453 485-585 (618)
339 KOG1991 Nuclear transport rece 54.6 1.3E+02 0.0029 35.6 11.9 134 323-460 391-535 (1010)
340 PF12530 DUF3730: Protein of u 54.4 2.2E+02 0.0049 28.0 16.5 127 275-415 13-151 (234)
341 PF14726 RTTN_N: Rotatin, an a 53.6 98 0.0021 26.3 8.2 75 421-496 23-97 (98)
342 KOG1020 Sister chromatid cohes 53.5 95 0.0021 38.5 10.7 106 344-460 816-924 (1692)
343 KOG4265 Predicted E3 ubiquitin 53.3 9.4 0.0002 39.7 2.3 47 72-119 290-337 (349)
344 cd00350 rubredoxin_like Rubred 53.0 10 0.00022 25.2 1.7 11 106-116 16-26 (33)
345 KOG2956 CLIP-associating prote 52.8 1.9E+02 0.004 31.7 11.8 144 345-498 330-476 (516)
346 smart00288 VHS Domain present 52.0 67 0.0015 28.7 7.5 72 429-500 38-112 (133)
347 PF11707 Npa1: Ribosome 60S bi 51.7 3E+02 0.0065 28.6 15.9 162 217-380 57-243 (330)
348 KOG1940 Zn-finger protein [Gen 51.5 11 0.00024 38.1 2.5 43 72-115 158-204 (276)
349 KOG4275 Predicted E3 ubiquitin 51.3 3.3 7.2E-05 41.6 -1.2 39 71-116 299-340 (350)
350 PF08167 RIX1: rRNA processing 51.2 82 0.0018 29.3 8.2 106 218-329 27-140 (165)
351 PLN02638 cellulose synthase A 51.0 11 0.00024 44.9 2.7 45 74-118 19-70 (1079)
352 COG5220 TFB3 Cdk activating ki 50.8 4.4 9.6E-05 39.5 -0.4 45 71-115 9-61 (314)
353 KOG1812 Predicted E3 ubiquitin 50.6 15 0.00032 39.4 3.4 69 72-141 146-228 (384)
354 KOG4535 HEAT and armadillo rep 50.6 20 0.00044 38.9 4.3 149 344-495 433-599 (728)
355 KOG4653 Uncharacterized conser 50.1 75 0.0016 37.1 8.8 168 321-499 745-918 (982)
356 COG2176 PolC DNA polymerase II 49.8 14 0.00031 44.2 3.3 40 68-119 910-951 (1444)
357 PF10367 Vps39_2: Vacuolar sor 49.7 6.6 0.00014 33.3 0.5 33 68-100 74-108 (109)
358 KOG0301 Phospholipase A2-activ 48.1 4.8E+02 0.01 29.9 16.4 144 345-496 590-744 (745)
359 PRK11088 rrmA 23S rRNA methylt 47.9 9.4 0.0002 38.6 1.4 26 72-97 2-30 (272)
360 PF12726 SEN1_N: SEN1 N termin 47.6 1.3E+02 0.0029 34.9 11.0 121 347-469 444-567 (727)
361 PLN02915 cellulose synthase A 47.1 14 0.0003 44.0 2.7 46 73-118 16-68 (1044)
362 PF11865 DUF3385: Domain of un 47.0 1.2E+02 0.0026 28.0 8.6 141 217-372 11-155 (160)
363 PF00790 VHS: VHS domain; Int 45.7 61 0.0013 29.2 6.2 73 429-501 43-120 (140)
364 COG5218 YCG1 Chromosome conden 44.9 3.2E+02 0.0069 30.9 12.2 71 385-456 90-160 (885)
365 PF04821 TIMELESS: Timeless pr 44.7 3.4E+02 0.0075 27.3 12.3 148 252-417 33-210 (266)
366 PF14726 RTTN_N: Rotatin, an a 43.6 70 0.0015 27.2 5.8 69 384-453 28-96 (98)
367 KOG0314 Predicted E3 ubiquitin 42.6 12 0.00026 40.4 1.3 69 67-137 214-286 (448)
368 COG1592 Rubrerythrin [Energy p 42.5 17 0.00036 34.0 2.0 25 72-116 134-158 (166)
369 PF12231 Rif1_N: Rap1-interact 42.0 4.5E+02 0.0097 27.9 15.4 135 276-414 59-203 (372)
370 COG5098 Chromosome condensatio 41.7 81 0.0017 36.0 7.3 105 346-457 301-415 (1128)
371 KOG1060 Vesicle coat complex A 41.6 6.2E+02 0.013 29.7 14.2 198 263-493 39-240 (968)
372 PF07814 WAPL: Wings apart-lik 41.6 97 0.0021 32.8 7.9 93 345-438 22-116 (361)
373 COG4530 Uncharacterized protei 41.0 23 0.00049 30.5 2.4 31 70-100 7-42 (129)
374 cd00730 rubredoxin Rubredoxin; 40.8 11 0.00023 27.9 0.4 15 66-80 28-42 (50)
375 PF12830 Nipped-B_C: Sister ch 40.3 2.8E+02 0.006 26.3 10.1 116 345-466 9-131 (187)
376 cd00197 VHS_ENTH_ANTH VHS, ENT 40.1 1.2E+02 0.0027 25.9 7.1 74 216-290 37-113 (115)
377 KOG3268 Predicted E3 ubiquitin 39.0 22 0.00048 33.2 2.2 32 87-118 187-228 (234)
378 COG5218 YCG1 Chromosome conden 39.0 1.9E+02 0.0041 32.6 9.4 109 219-338 94-202 (885)
379 PHA02862 5L protein; Provision 38.1 27 0.00058 31.7 2.5 56 74-136 4-65 (156)
380 KOG2933 Uncharacterized conser 37.8 1.4E+02 0.0031 30.8 7.9 134 345-492 89-227 (334)
381 PF01347 Vitellogenin_N: Lipop 37.6 1.2E+02 0.0025 34.5 8.3 164 306-493 396-583 (618)
382 COG5116 RPN2 26S proteasome re 37.5 1E+02 0.0022 34.4 7.1 98 385-498 550-649 (926)
383 PF05883 Baculo_RING: Baculovi 37.4 29 0.00063 31.2 2.6 43 72-115 26-77 (134)
384 PHA02825 LAP/PHD finger-like p 37.4 41 0.0009 31.1 3.7 47 71-118 7-59 (162)
385 KOG4718 Non-SMC (structural ma 37.2 21 0.00046 34.4 1.8 45 73-118 182-227 (235)
386 PF10915 DUF2709: Protein of u 36.9 28 0.00061 33.0 2.6 36 72-116 87-122 (238)
387 KOG1078 Vesicle coat complex C 36.4 3.8E+02 0.0083 31.3 11.6 139 260-414 392-531 (865)
388 PF00301 Rubredoxin: Rubredoxi 36.3 15 0.00032 26.8 0.5 15 66-80 28-42 (47)
389 KOG1992 Nuclear export recepto 36.2 1.6E+02 0.0035 34.4 8.7 175 259-438 498-705 (960)
390 smart00638 LPD_N Lipoprotein N 36.0 6.6E+02 0.014 28.1 14.5 92 344-453 442-541 (574)
391 KOG2062 26S proteasome regulat 35.7 3.3E+02 0.0072 31.6 10.9 83 275-373 567-652 (929)
392 PF01417 ENTH: ENTH domain; I 35.3 2E+02 0.0043 25.2 7.8 101 394-500 11-122 (125)
393 TIGR00373 conserved hypothetic 35.0 25 0.00053 32.7 1.9 37 69-121 106-142 (158)
394 KOG1451 Oligophrenin-1 and rel 34.7 29 0.00063 38.5 2.6 63 428-498 486-550 (812)
395 PF09889 DUF2116: Uncharacteri 34.0 62 0.0013 24.8 3.6 14 106-119 2-15 (59)
396 PF04499 SAPS: SIT4 phosphatas 33.9 3.5E+02 0.0077 29.8 10.9 112 385-500 20-150 (475)
397 PF08216 CTNNBL: Catenin-beta- 33.4 45 0.00097 28.9 3.1 41 361-401 62-102 (108)
398 cd00197 VHS_ENTH_ANTH VHS, ENT 33.3 2.2E+02 0.0048 24.3 7.6 70 429-498 38-114 (115)
399 PF12906 RINGv: RING-variant d 33.3 40 0.00086 24.4 2.4 29 85-113 13-47 (47)
400 PLN02400 cellulose synthase 33.0 23 0.0005 42.4 1.6 45 74-118 38-89 (1085)
401 PF08389 Xpo1: Exportin 1-like 32.9 2.1E+02 0.0045 25.1 7.7 66 260-327 83-148 (148)
402 KOG2462 C2H2-type Zn-finger pr 32.7 26 0.00056 35.3 1.7 60 70-134 159-237 (279)
403 KOG3899 Uncharacterized conser 32.1 21 0.00046 36.0 1.0 28 94-121 329-368 (381)
404 PRK06266 transcription initiat 31.7 34 0.00073 32.5 2.3 55 70-140 115-170 (178)
405 PF06844 DUF1244: Protein of u 31.6 26 0.00056 27.3 1.2 12 94-105 12-23 (68)
406 PF06676 DUF1178: Protein of u 31.5 22 0.00048 32.6 1.0 23 89-116 9-41 (148)
407 PF14569 zf-UDP: Zinc-binding 31.2 45 0.00098 26.9 2.5 46 74-119 11-63 (80)
408 cd01413 SIR2_Af2 SIR2_Af2: Arc 31.1 72 0.0016 31.2 4.6 58 74-132 104-166 (222)
409 cd03565 VHS_Tom1 VHS domain fa 31.0 2.3E+02 0.0051 25.6 7.6 75 216-291 38-114 (141)
410 PF04869 Uso1_p115_head: Uso1 30.7 2.9E+02 0.0062 28.7 9.1 43 413-456 184-229 (312)
411 PF00096 zf-C2H2: Zinc finger, 30.5 18 0.00038 21.4 0.1 13 73-85 1-13 (23)
412 PRK00420 hypothetical protein; 30.1 31 0.00068 30.1 1.6 10 108-117 41-50 (112)
413 PF06012 DUF908: Domain of Unk 29.8 1.8E+02 0.0039 30.3 7.5 75 361-436 238-324 (329)
414 KOG2062 26S proteasome regulat 29.5 1.7E+02 0.0038 33.7 7.5 96 387-498 555-652 (929)
415 PF11290 DUF3090: Protein of u 29.5 48 0.001 31.1 2.8 17 104-120 151-167 (171)
416 TIGR03847 conserved hypothetic 29.5 48 0.001 31.1 2.8 22 103-124 152-174 (177)
417 KOG0883 Cyclophilin type, U bo 29.0 27 0.00058 36.7 1.2 51 71-121 100-155 (518)
418 PF08506 Cse1: Cse1; InterPro 28.9 7.3E+02 0.016 26.4 13.7 144 342-494 208-370 (370)
419 cd00729 rubredoxin_SM Rubredox 28.1 33 0.00072 23.0 1.1 10 107-116 18-27 (34)
420 PF07800 DUF1644: Protein of u 27.8 28 0.0006 32.2 0.9 20 71-90 1-20 (162)
421 PF06906 DUF1272: Protein of u 27.6 71 0.0015 24.2 2.8 26 91-119 28-53 (57)
422 PF09538 FYDLN_acid: Protein o 27.5 43 0.00094 29.0 2.0 14 107-120 26-39 (108)
423 PF12830 Nipped-B_C: Sister ch 27.2 2.3E+02 0.0051 26.8 7.3 67 429-500 9-75 (187)
424 PF11864 DUF3384: Domain of un 26.6 8.7E+02 0.019 26.5 19.5 238 229-487 41-318 (464)
425 PF11791 Aconitase_B_N: Aconit 26.1 67 0.0015 29.5 3.0 24 430-453 96-119 (154)
426 PF06685 DUF1186: Protein of u 25.7 6.9E+02 0.015 25.0 10.5 72 384-467 71-152 (249)
427 KOG1941 Acetylcholine receptor 25.6 33 0.00071 36.1 1.1 44 71-114 364-412 (518)
428 KOG2274 Predicted importin 9 [ 25.6 1.2E+03 0.026 27.9 19.3 153 258-416 529-690 (1005)
429 PRK05978 hypothetical protein; 25.4 39 0.00084 31.0 1.4 31 73-119 34-64 (148)
430 cd03572 ENTH_epsin_related ENT 25.2 1.9E+02 0.004 25.7 5.6 53 216-269 38-92 (122)
431 PF06012 DUF908: Domain of Unk 25.0 2.8E+02 0.006 28.9 7.9 75 402-477 238-323 (329)
432 KOG1832 HIV-1 Vpr-binding prot 24.8 1.7E+02 0.0036 34.6 6.4 129 276-415 675-824 (1516)
433 PF04499 SAPS: SIT4 phosphatas 24.8 2.6E+02 0.0057 30.8 8.0 76 340-415 58-148 (475)
434 KOG2199 Signal transducing ada 24.4 2.7E+02 0.0058 29.8 7.4 76 428-503 45-122 (462)
435 PF03854 zf-P11: P-11 zinc fin 24.1 29 0.00063 25.3 0.3 31 87-118 16-46 (50)
436 KOG2137 Protein kinase [Signal 23.6 2.3E+02 0.0049 32.6 7.1 130 260-399 386-521 (700)
437 PRK14138 NAD-dependent deacety 23.4 1.3E+02 0.0028 30.0 4.8 62 74-137 110-177 (244)
438 KOG1609 Protein involved in mR 23.1 62 0.0014 33.1 2.7 55 65-119 70-135 (323)
439 PRK01343 zinc-binding protein; 23.1 59 0.0013 24.7 1.8 35 72-106 9-43 (57)
440 cd01408 SIRT1 SIRT1: Eukaryoti 22.9 1.6E+02 0.0034 29.2 5.3 31 89-119 121-152 (235)
441 KOG1020 Sister chromatid cohes 22.9 5E+02 0.011 32.7 10.1 67 386-455 816-882 (1692)
442 PF04423 Rad50_zn_hook: Rad50 22.8 22 0.00048 26.4 -0.6 23 108-136 21-43 (54)
443 PF06685 DUF1186: Protein of u 22.7 5.6E+02 0.012 25.7 9.2 86 303-393 71-160 (249)
444 PF13251 DUF4042: Domain of un 22.6 6.7E+02 0.015 23.8 10.1 135 361-497 2-172 (182)
445 PF02146 SIR2: Sir2 family; I 22.5 1.2E+02 0.0027 28.2 4.4 44 89-133 110-159 (178)
446 PF14663 RasGEF_N_2: Rapamycin 22.3 2E+02 0.0043 25.0 5.2 38 429-467 9-46 (115)
447 PF14666 RICTOR_M: Rapamycin-i 22.2 7.6E+02 0.016 24.3 10.7 146 277-457 78-225 (226)
448 PF14663 RasGEF_N_2: Rapamycin 22.1 1.3E+02 0.0029 26.1 4.1 39 345-384 9-47 (115)
449 KOG1991 Nuclear transport rece 22.1 1.4E+03 0.031 27.5 14.4 118 304-425 409-543 (1010)
450 PF08746 zf-RING-like: RING-li 21.8 95 0.0021 22.0 2.6 25 89-113 18-43 (43)
451 PF13894 zf-C2H2_4: C2H2-type 21.8 33 0.00071 19.9 0.2 12 73-84 1-12 (24)
452 PF08216 CTNNBL: Catenin-beta- 21.7 72 0.0016 27.6 2.3 33 324-356 67-99 (108)
453 cd03565 VHS_Tom1 VHS domain fa 21.7 5.3E+02 0.011 23.2 8.1 73 428-500 38-116 (141)
454 PF06750 DiS_P_DiS: Bacterial 21.6 57 0.0012 27.3 1.6 28 106-140 32-59 (92)
455 PF04388 Hamartin: Hamartin pr 20.9 1.3E+03 0.029 26.6 13.1 133 344-497 4-138 (668)
456 PF10521 DUF2454: Protein of u 20.9 3.5E+02 0.0077 27.4 7.6 74 217-291 120-202 (282)
457 PRK00448 polC DNA polymerase I 20.3 77 0.0017 39.8 3.0 41 67-119 903-945 (1437)
458 COG1675 TFA1 Transcription ini 20.2 76 0.0017 30.0 2.3 53 69-137 110-163 (176)
459 KOG2487 RNA polymerase II tran 20.2 39 0.00086 33.9 0.4 16 71-86 272-287 (314)
460 TIGR01405 polC_Gram_pos DNA po 20.2 78 0.0017 39.1 3.0 41 67-119 678-720 (1213)
461 cd01407 SIR2-fam SIR2 family o 20.0 1.8E+02 0.0038 28.3 5.0 45 74-119 100-145 (218)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=7.1e-26 Score=270.08 Aligned_cols=280 Identities=21% Similarity=0.191 Sum_probs=244.2
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437 216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293 (565)
Q Consensus 216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~ 293 (565)
..+..+++.|.++ .+.+.|..|+..|+.+++.++++|..+++ .|+||.|+.+|.+ ++..+|++|+.+|.+|+.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~- 87 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCK- 87 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhc-
Confidence 5678899999865 25788999999999999999999999996 9999999999987 689999999999999996
Q ss_pred CchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC---CCCchhh-ccCCchHHHHHHhcCCC--CHHHHHHH
Q 008437 294 NNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL---DDAKPII-GSSHAVPFLVELCKGKT--EHQCKLDA 365 (565)
Q Consensus 294 ~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~---~~~k~~I-~~~g~i~~Lv~lL~~~~--~~~~~~~A 365 (565)
+++++..|+..|+||+|+.+|++++ .+++|+++|++|+.+ ++++..| ...|+||+|+.+|+++. +..+++.|
T Consensus 88 ~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~A 167 (2102)
T PLN03200 88 EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL 167 (2102)
T ss_pred CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHH
Confidence 5889999999999999999999875 468899999999987 4456454 46899999999999872 22345777
Q ss_pred HHHHHHhccCCCChHH-HHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcC-CH
Q 008437 366 LHALYNLSTIPSNIPN-LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTG-EL 442 (565)
Q Consensus 366 l~aL~nLs~~~~nk~~-iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~-s~ 442 (565)
+.+|+|||.+.+++.. ++++|+|+.|+.++.++++..++.|+.+|.+++.+ ++.+..+++. |+|+.|+++|.++ ++
T Consensus 168 v~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIea-GaVP~LV~LL~sg~~~ 246 (2102)
T PLN03200 168 TGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDA-GAVKQLLKLLGQGNEV 246 (2102)
T ss_pred HHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHccCCCh
Confidence 8999999999998865 58999999999999889999999999999998875 6688889886 9999999999875 56
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCC---------hhHHHHHHHHHHHHHhhc
Q 008437 443 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS---------TRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 443 ~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s---------~~~k~~A~~lL~~L~~~r 501 (565)
.+|++|+++|.+||.++.+++..+.+.|+||.|+.++...+ ...++.|.++|.++.+..
T Consensus 247 ~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999877543 345899999999988643
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=266.61 Aligned_cols=282 Identities=21% Similarity=0.225 Sum_probs=244.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
++++.|+.+|.++ +...|..|++.|+++++.+++++..+++.|+||.|+++|.+ ++..+|++|+++|.||+.+.+
T Consensus 446 ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 446 EGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcH
Confidence 5789999999998 89999999999999999898999999999999999999987 688999999999999997544
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc------------------------------------
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK------------------------------------ 337 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k------------------------------------ 337 (565)
.++..+.++|+|++|+++|++++. ++.|+++|.+|+...+..
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 445555578999999999998854 567999999986432211
Q ss_pred -hh-hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 338 -PI-IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 338 -~~-I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
.. +...|+++.|+++|+++ +...++.|+++|.|++... +++..++.+|+|++|+.++..++..+++.++++|.||+
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 11 11358999999999999 8999999999999999754 67888999999999999999999999999999999999
Q ss_pred c--CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437 415 A--SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 492 (565)
Q Consensus 415 ~--~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~ 492 (565)
. .++++..++.. |+|+.|+++|...+..+.+.|+.+|.+|+...+ .+..+.++|+|+.|+.++.+|+++.|+.|+.
T Consensus 680 ~~~~~~q~~~~v~~-GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~ 757 (2102)
T PLN03200 680 RSIKENRKVSYAAE-DAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAAR 757 (2102)
T ss_pred hCCCHHHHHHHHHc-CCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHH
Confidence 6 34455667775 999999999999999999999999999999887 4667778899999999999999999999999
Q ss_pred HHHHHHhhcccCC
Q 008437 493 LLMLFREQRQRDH 505 (565)
Q Consensus 493 lL~~L~~~r~~~~ 505 (565)
+|..|...++-++
T Consensus 758 AL~~L~~~~~~~~ 770 (2102)
T PLN03200 758 ALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHHHhCCChhH
Confidence 9999887766554
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-25 Score=221.49 Aligned_cols=279 Identities=20% Similarity=0.258 Sum_probs=250.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.|+..|+..+... ..++|+.+++.|.+|+.. +++|..++..|++.+|.++-++ .|..+|.+|..+|.|+. +..
T Consensus 126 ~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmT-hs~ 198 (550)
T KOG4224|consen 126 LGLDLLILQMMTD-GVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMT-HSR 198 (550)
T ss_pred cChHHHHHHhcCC-CcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhh-hhh
Confidence 3555666555544 689999999999999976 6799999999999999996665 78899999999999998 578
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCC--chHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSH--AVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g--~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
+||+.++.+|++|.|+.++++++. +..++.++.|++.+..++..+.+.+ .++.||.+++++ ++.++-.|.-||.|
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhh
Confidence 999999999999999999999854 6779999999999999999998876 999999999999 89999999999999
Q ss_pred hccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC-CHHHHHHHHH
Q 008437 372 LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVS 450 (565)
Q Consensus 372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-s~~~~e~Av~ 450 (565)
|+++.+....++++|.+|.+++|+.++.....-..++.+.|++.++-+..-|++. |++..||.+|+.+ +++.|-+|+.
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~da-gfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADA-GFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecc-cchhHHHHHHhcCCchhhhhhHHH
Confidence 9999999999999999999999988887778888899999999999888888886 9999999999975 5569999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
+|++|+..++..+..+.+.|+||+|..|+.++.-.++..-...+..|.-....
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 99999998888889999999999999999999999999988888888755443
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=229.11 Aligned_cols=282 Identities=18% Similarity=0.220 Sum_probs=250.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
..++.+|..|....++..|.+|+++|.+++.++.+.-..++++|++|.|+.+|.+ .+..+++.|+++|.|++.+..
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCCh
Confidence 4578999999876579999999999999999999999999999999999999998 789999999999999998888
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
..|..+.+.|++++|..++.... ...+++|+|.||+....-...+.. ..++|.|..+|.+. |+++..+|++||.+
T Consensus 185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 185 DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSY 263 (514)
T ss_pred HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 88999999999999999998765 356799999999987543333333 57899999999999 99999999999999
Q ss_pred hccC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHH
Q 008437 372 LSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAV 449 (565)
Q Consensus 372 Ls~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av 449 (565)
|+.. .+....++++|+++.|+++|...+..++--|+.++.|++.+.+.....+-..|+++.|..+|.. .....++.|+
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence 9954 4567777899999999999988888888999999999999888888776667999999999985 4556899999
Q ss_pred HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 502 (565)
Q Consensus 450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~ 502 (565)
+++.||+.++.+..+.++++|++|.|+.++..+..++|..|++++.++.-...
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999998875443
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.2e-24 Score=210.55 Aligned_cols=273 Identities=21% Similarity=0.273 Sum_probs=244.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
++..+.+ |....+..+|..|..+|.+++ +..++|+.++.+|++|.||.+|++ .|..+|..+..++.|++. +..
T Consensus 168 aL~pltr-LakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaV-d~~ 240 (550)
T KOG4224|consen 168 ALEPLTR-LAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAV-DRR 240 (550)
T ss_pred chhhhHh-hcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhh-hHH
Confidence 3445555 665558999999999999998 677899999999999999999998 799999999999999997 688
Q ss_pred hhHHHHhcC--chHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 297 NKELMLAAG--VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 297 nk~~i~~~G--~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
+|+.++++| .++.|+.++++++.+ -.|.-+|.||+...++...|.+.|.+|.||++|+++ ..........+|.|+
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrni 319 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNI 319 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhc
Confidence 999999988 999999999998764 448889999999999999999999999999999988 666777788999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
+.++-|-..++++|.+.+|++++.-+ +.+++-.|..+|+||+. .+.++..|.+. |+|+.|.+++.++.-.+|+.--+
T Consensus 320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhcCChhHHHHHHH
Confidence 99999999999999999999988665 45689999999999998 66788888886 99999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
++..|+-++. .+..+.+.|.+|.|+.+..+.+.+++.+|+.+|-+|..
T Consensus 399 c~a~Lal~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 399 CIAQLALNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHhccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 9988887665 57788999999999999999999999999999999884
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.88 E-value=9.1e-22 Score=194.54 Aligned_cols=277 Identities=18% Similarity=0.192 Sum_probs=242.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.-++.+|++|.+....-.|.+|+++|.++++...+-...++++|++|.++++|.+ .+..++++++|+|.|++-+++
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~ 189 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSE 189 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCch
Confidence 3468899999655466779999999999999888778888999999999999998 678899999999999997777
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH----HHHHHHHHHHhcCCCC---CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDD---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~----~~~A~aaL~nLs~~~~---~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
..|..+.+.|++++|+.+|.+... ..++.++|.||+.... .-..| +.++|.|.+|+-+. ++++..+|+||
T Consensus 190 ~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~-D~evlvDA~WA 266 (526)
T COG5064 190 GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR-DPEVLVDACWA 266 (526)
T ss_pred hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc-CHHHHHHHHHH
Confidence 789999999999999999986532 3669999999986532 22222 46899999999998 99999999999
Q ss_pred HHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437 369 LYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 447 (565)
Q Consensus 369 L~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~ 447 (565)
|..|+..+. -...+++.|+.+.|+++|.+.+..++.-++..+.|+....+.+..++-..|++..+..+|.+....++..
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKE 346 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhh
Confidence 999997664 5556778999999999988888889999999999999988888877666799999999999888899999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
|++++.||..++.+..+.+++..++|.|+.++....-++|..|.+++.+...
T Consensus 347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred hheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999888663
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=4.5e-23 Score=166.18 Aligned_cols=72 Identities=47% Similarity=0.815 Sum_probs=63.6
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 140 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 140 (565)
+|++|+||||+++|.|||++++||||||.+|++|+..++.+||.|+++++..+|+||..||..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999888999999999999999999999999999999884
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8.9e-21 Score=200.94 Aligned_cols=278 Identities=20% Similarity=0.198 Sum_probs=239.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
....+..+.+. +.+.|..+...+|.+...... ....+...|.|+.||.+|... .++.+|..|+++|.|+|.+..+
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchh
Confidence 56778888887 888899999999999754332 233444569999999999853 5689999999999999988888
Q ss_pred hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
....++++|++|.++.+|.+++ .++.|+++|.|++.+ ...|..+...|++++|+.++.........+++.|+|.|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 8999999999999999999885 468899999999988 6788888899999999999988733468899999999999
Q ss_pred cCCCChHHHH-HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 374 TIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 374 ~~~~nk~~iv-~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
....--..+. -..++|.|..++.+.|..+...|+++|.+|+..+..+..++-..|+++.|+++|...++.++-.|+.++
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 8775433333 367899999999999999999999999999988777777766679999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCcHHHHHHhhh-cCChhHHHHHHHHHHHHHh
Q 008437 453 FLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~ 499 (565)
.||..++....+.++..|++|.|..|+. +..+..|+.|.++|.++..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999998877 5667789999999999774
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.81 E-value=2e-19 Score=178.02 Aligned_cols=276 Identities=17% Similarity=0.169 Sum_probs=234.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.++.+.+.|-+. +.+.|..|+...|.+.+. ..--...+.++|.+|.++.|+... .....|-.|+|+|.|++.+..
T Consensus 72 elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCcc
Confidence 468888889887 899999999999988644 333566788999999999999542 456688999999999997665
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYN 371 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~n 371 (565)
...+.++++|++|.++.+|.+++ .++.++++|.|++.+ +..|..+...|++++|+.+|.+. .+....+++.|+|.|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 56677789999999999999874 478899999999988 56788888899999999999865 345788999999999
Q ss_pred hccCC---CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437 372 LSTIP---SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 448 (565)
Q Consensus 372 Ls~~~---~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A 448 (565)
||... .+-..+- -++|.|.+|+...++.+.-.|+++|..|+..+..+..++-..|....|+++|.+.+..++..|
T Consensus 228 lcRGknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 228 LCRGKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred hhCCCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 99643 2443333 368889998888899999999999999999887666655556999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
++...||..++....+.++..|+++.+..|+.+..+++|..|.+.+.++.
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 99999999988878889999999999999999998999999999888765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=4.1e-18 Score=189.76 Aligned_cols=270 Identities=19% Similarity=0.235 Sum_probs=225.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..|++.|.+. +.+....++..|++|+- ..+++..|.+.|+|+.|++++.+ .+..++..++.+|+||+. ++
T Consensus 290 ~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSf-d~ 362 (708)
T PF05804_consen 290 GIVSLLVKCLDRE-NEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSF-DP 362 (708)
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCc-CH
Confidence 4678889999887 89999999999999984 55699999999999999999987 678899999999999995 78
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
++|..|++.|++|.|+.+|..++.+..+.++|.+||..+++|..+...+++|.|+++|-++.+.++...++.++.|||.+
T Consensus 363 ~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 363 ELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 89999999999999999999888788899999999999999999998999999999887664667778899999999999
Q ss_pred CCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHH
Q 008437 376 PSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLF 453 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~ 453 (565)
..|...+.+.|+++.|++ .++..++. .+.+++|++.++..-..... +.|..|+.++.. .++...-.++++|.
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 999999999999999999 55544433 56899999998843333332 578888888876 46778889999999
Q ss_pred HhhcCChHHHHHHHhCCcHHHHHHhhhcCC--hhHHHHHHHHHHHHH
Q 008437 454 LLCNGNEKCCQMVLQEGVIPALVSISVNGS--TRGRDKAQRLLMLFR 498 (565)
Q Consensus 454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s--~~~k~~A~~lL~~L~ 498 (565)
||...+..+.+.+.+.+++|.|..++..|. +...-.++.++..+.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 999877777777778899999998776652 334444444444433
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=3.9e-17 Score=181.99 Aligned_cols=275 Identities=23% Similarity=0.259 Sum_probs=216.5
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhccc-cc-------------------
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESA-VC------------------- 273 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~-~~------------------- 273 (565)
.+.+...++.|-. +...+.++...|..|++ +++|-..+.+ .-++.+|.+.|... ..
T Consensus 122 ~~~~d~yiE~lYe--~~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~ 198 (708)
T PF05804_consen 122 INDLDEYIELLYE--DIPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS 198 (708)
T ss_pred HHHHHHHHHHHhc--ccHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence 3566777888874 35667788888888885 4556555555 55667777777431 00
Q ss_pred ----------------------------------------CC---------------------CHHHHHHHHHHHHHhhc
Q 008437 274 ----------------------------------------ER---------------------NSYAQEIGAMALFNLAV 292 (565)
Q Consensus 274 ----------------------------------------s~---------------------~~~~q~~A~~aL~nLa~ 292 (565)
.. ...+...++..|+||+
T Consensus 199 ~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLA- 277 (708)
T PF05804_consen 199 QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLA- 277 (708)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00 0122345566899999
Q ss_pred cCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 293 NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
.+.+++..|++.|+++.|+++|++++. ...++.+|..||...+||..|++.|+|+.|++++.++ +......++++|+
T Consensus 278 ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 278 EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLF 356 (708)
T ss_pred cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 478899999999999999999998754 3458899999999999999999999999999999998 8899999999999
Q ss_pred HhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHH
Q 008437 371 NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAV 449 (565)
Q Consensus 371 nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av 449 (565)
|||.+.++|..+++.|+||.|+.++.++ ..+..|+.+|.+|+..+++|..+..+ ++++.|+++|.. .++.+...++
T Consensus 357 NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~~eli 433 (708)
T PF05804_consen 357 NLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENSEEEVQLELI 433 (708)
T ss_pred HhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCCCccccHHHH
Confidence 9999999999999999999999988654 45578999999999999999988887 899999998766 4555666788
Q ss_pred HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 504 (565)
Q Consensus 450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~ 504 (565)
+++.||+.+.. +.+.+.+.|+++.|+.......+ ..+|+++|...+++
T Consensus 434 aL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D------~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 434 ALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD------PLLLKLIRNISQHD 481 (708)
T ss_pred HHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc------HHHHHHHHHHHhcC
Confidence 88889998775 67888888999999987655443 33455555555554
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.71 E-value=9.2e-18 Score=131.51 Aligned_cols=63 Identities=57% Similarity=0.919 Sum_probs=60.4
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 135 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 135 (565)
+|.||||+++|+|||+++|||+|||.||++|+.+ +.+||.|+++++..+++||..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 77899999999999999999999999998
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=2.1e-16 Score=178.23 Aligned_cols=272 Identities=17% Similarity=0.161 Sum_probs=224.9
Q ss_pred HHH-HHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc--c------CCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 008437 233 QKC-NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV--C------ERNSYAQEIGAMALFNLAVNNNRNKELMLA 303 (565)
Q Consensus 233 ~q~-~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~--~------s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~ 303 (565)
-|. .|+..|-.+. .++++|..|-+.|++.++-.||.-.+ + ...-.++..|.++|-||.+++..||..+..
T Consensus 313 H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 6777777776 67899999999999999999875221 1 113458899999999999998889998886
Q ss_pred c-CchHHHHHHhcCCc--HHHHHHHHHHHhcCCC-C-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCC
Q 008437 304 A-GVIPLLEKMISNSN--SHGAATALYLNLSFLD-D-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPS 377 (565)
Q Consensus 304 ~-G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~-~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~ 377 (565)
. |.++.||..|.+.. .....+.+|.||+... . .|..+.+.|-+..|+..--........+..+.|||||+. +.+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 4 89999999998763 3455888999999873 3 467777789999888764333256788999999999996 558
Q ss_pred ChHHHHH-cCchHHHhhccC-C---CChHHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437 378 NIPNLLS-AGIISGLQSLAV-P---GDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 448 (565)
Q Consensus 378 nk~~iv~-~G~v~~Lv~Ll~-~---~~~~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A 448 (565)
||..|.. .|++..||.+|. + ....+.+.+-+||.|.+. ++..|..+.++ .++..|++.|.+.+-.+.-++
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeecc
Confidence 9999998 699999999653 3 356788999999999765 67777777777 999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccCCC
Q 008437 449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHP 506 (565)
Q Consensus 449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~~~ 506 (565)
+++||||..++.+..+++.+.|+|+.|..|+.+.....-+-++..|++|-.+|.-.+.
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq~ 608 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQA 608 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhhh
Confidence 9999999999999999999999999999999999999999999999998888855543
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.67 E-value=7.5e-16 Score=168.32 Aligned_cols=281 Identities=20% Similarity=0.157 Sum_probs=223.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++..+.+|.+. ++.+|..|+..|..++..+.+.+..+.+.|+|+.||.+|.+ .+.++|.+|+++|+||...+..
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCC
Confidence 457889999987 99999999999999999999999999999999999999998 7899999999999999876655
Q ss_pred --hhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC---------C----C
Q 008437 297 --NKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---------T----E 358 (565)
Q Consensus 297 --nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~---------~----~ 358 (565)
||..|.+.++|+.++++|+.. +.++..+++|+||+..|..|..|.. .+++.|.+-+-.. . +
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCccccccc
Confidence 999999999999999999852 5678899999999999888887763 4566666544211 0 2
Q ss_pred HHHHHHHHHHHHHhcc-CCCChHHHHH-cCchHHHhhccC------CCChHHHHHHHHHHHHHhcCcc------------
Q 008437 359 HQCKLDALHALYNLST-IPSNIPNLLS-AGIISGLQSLAV------PGDPMWTEKSLAVLLNLAASAA------------ 418 (565)
Q Consensus 359 ~~~~~~Al~aL~nLs~-~~~nk~~iv~-~G~v~~Lv~Ll~------~~~~~~~e~al~~L~nLa~~~~------------ 418 (565)
..+..++..+|.|+++ ..+.|.++.+ .|.|..|+..+. ..+...+|+|+.+|.||+-.-+
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 4577899999999998 6678888887 699999998553 2466778999999999985221
Q ss_pred ---------c-----------HHHH---------------------hcCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhh
Q 008437 419 ---------G-----------KEEM---------------------NSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLC 456 (565)
Q Consensus 419 ---------~-----------r~~i---------------------~~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc 456 (565)
+ ...+ .-++.+|..-..+|. ...+.+.|.++++|-||+
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 0 0000 011123333344443 357889999999999999
Q ss_pred cCCh----HHHHHH-HhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437 457 NGNE----KCCQMV-LQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 457 ~~~~----~~~~~v-~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
.... ..+..+ .++.+.|.|++|+.++++.+.+.++.+|++|+.....
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 7652 335555 7889999999999999999999999999999865433
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=6.6e-14 Score=139.18 Aligned_cols=276 Identities=14% Similarity=0.116 Sum_probs=221.7
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
++...+|..|... ++.++-.-.+..++.-+-.++.+|..+++.++++.+.+.|... +...+.+.+.++++.|...
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~d- 220 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTD- 220 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCC-
Confidence 4566667777542 3667788888889988888999999999999999999888763 2335667788899998754
Q ss_pred chh----------hHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCH--
Q 008437 295 NRN----------KELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH-- 359 (565)
Q Consensus 295 ~~n----------k~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~-- 359 (565)
++. .+.|+..|++..|++.|+.+ +.-..+..+|..|+..++....|.++|++..|++++.+..+.
T Consensus 221 DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~ 300 (461)
T KOG4199|consen 221 DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGN 300 (461)
T ss_pred CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhH
Confidence 433 34677788999999999764 344668889999999999999999999999999999874233
Q ss_pred -HHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc--CCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHH
Q 008437 360 -QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA--VPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLAT 435 (565)
Q Consensus 360 -~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll--~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~ 435 (565)
...+.++..|..|+.++++|..+|+.|+.+.++.++ ...++.+.+.+++++.-||. .++.-..+++. |+-...++
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~-G~a~~avq 379 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA-GAADLAVQ 379 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc-chHHHHHH
Confidence 355889999999999999999999999999999953 34689999999999999997 55666677775 77777788
Q ss_pred Hhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 436 VLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 436 lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
-|+. ....+|.+|++.+.||..++.+++..++..| +..|+.......+.....|..+||-|
T Consensus 380 AmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 380 AMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 8875 4567899999999999999988888888877 67777766666666777777788764
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.2e-13 Score=137.37 Aligned_cols=268 Identities=13% Similarity=0.129 Sum_probs=222.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008437 225 LNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 304 (565)
Q Consensus 225 L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~ 304 (565)
|.+..+...-.+++.+|..+....++ +.+..+...++.+|.... .+.++-..++..+..-+..++.||..+++.
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~ 188 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMEL 188 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34444677788999999999866554 556667889999997633 456666777777888787889999999999
Q ss_pred CchHHHHHHhcC-Cc--HHHHHHHHHHHhcCCCCCc----------hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 305 GVIPLLEKMISN-SN--SHGAATALYLNLSFLDDAK----------PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 305 G~i~~Lv~lL~s-~~--~~~~A~aaL~nLs~~~~~k----------~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
++++++...|.. +. +...+.+++.-|...++.| ..|...|++..|++.|.-+.++.....++.+|..
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 999999988764 33 3456888999988888765 3445567889999999988889999999999999
Q ss_pred hccCCCChHHHHHcCchHHHhhccCC-C---ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc--CCHHHH
Q 008437 372 LSTIPSNIPNLLSAGIISGLQSLAVP-G---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQ 445 (565)
Q Consensus 372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~-~---~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~ 445 (565)
|+..++.+..+++.|++..|++++.+ + ...+.+.++.+|..|+.++..+..|++. |+.+.++.++.. .+|.+.
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi 347 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPLVI 347 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChHHH
Confidence 99999999999999999999997755 2 3456688999999999999999999997 999999999865 789999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc--CChhHHHHHHHHHHHHHh
Q 008437 446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~ 499 (565)
+.++.++..||-++++....+++.|+-...+.-+.. -...++++|..++|++..
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887777765554 245678999999999873
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.55 E-value=6.3e-13 Score=145.64 Aligned_cols=281 Identities=18% Similarity=0.119 Sum_probs=214.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh-
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA- 291 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa- 291 (565)
..+|+.||.+|.+. ..++|..|+.+||+|.-+... ++..|.+.++|+.|+++|... .|.++++....+|+||+
T Consensus 274 lggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 274 LGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSS 349 (717)
T ss_pred hccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccc
Confidence 47899999999998 999999999999999876554 999999999999999999853 34555555555555554
Q ss_pred -----------------------------------------------------ccCchhhHHHHhc-CchHHHHHHhcC-
Q 008437 292 -----------------------------------------------------VNNNRNKELMLAA-GVIPLLEKMISN- 316 (565)
Q Consensus 292 -----------------------------------------------------~~~~~nk~~i~~~-G~i~~Lv~lL~s- 316 (565)
...++.|+.|.+. |.|..|+.++++
T Consensus 350 ~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 350 NDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 3233456677765 789999888863
Q ss_pred -------CcHHHHHHHHHHHhcCCCC------C--------------------------chh------------------
Q 008437 317 -------SNSHGAATALYLNLSFLDD------A--------------------------KPI------------------ 339 (565)
Q Consensus 317 -------~~~~~~A~aaL~nLs~~~~------~--------------------------k~~------------------ 339 (565)
....++++.+|.||+..-+ . +..
T Consensus 430 i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pk 509 (717)
T KOG1048|consen 430 IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPK 509 (717)
T ss_pred HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCC
Confidence 1246889999999985411 0 000
Q ss_pred ----hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC-----ChHHH-HHcCchHHHhhccCCCChHHHHHHHHH
Q 008437 340 ----IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-----NIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAV 409 (565)
Q Consensus 340 ----I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~-----nk~~i-v~~G~v~~Lv~Ll~~~~~~~~e~al~~ 409 (565)
+....+|..=..+|....+..+.++++.||-||+.... .+..+ ....+.+.|++|+..++..+...++.+
T Consensus 510 G~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~ 589 (717)
T KOG1048|consen 510 GSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGA 589 (717)
T ss_pred CceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHH
Confidence 00011222222334333367799999999999986432 44444 567899999999999999999999999
Q ss_pred HHHHhcCcccHHHHhcCCCCHHHHHHHhhcC------CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-C
Q 008437 410 LLNLAASAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-G 482 (565)
Q Consensus 410 L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~ 482 (565)
|.||+.+..++..|.. ++++.|++.|..+ +.+..-.++.+|++|...+..+...+.+.+++++|+.|..+ -
T Consensus 590 LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 590 LRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred HhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC
Confidence 9999999999999984 7999999999763 25677788889999999888888999999999999988776 4
Q ss_pred ChhHHHHHHHHHHHHHhhc
Q 008437 483 STRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 483 s~~~k~~A~~lL~~L~~~r 501 (565)
+++.-+.|..+|..|-.++
T Consensus 668 S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 668 SPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6688899999988876553
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=5e-12 Score=126.13 Aligned_cols=211 Identities=21% Similarity=0.185 Sum_probs=172.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..|+..|....++.+|..|+.++.+.+ ..+.++..+.+.|+++.+..+|.+ +++.+++.|+.+|.|++. +.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCC-Ch
Confidence 567899999997769999999999999987 466899999999999999999988 789999999999999995 67
Q ss_pred hhhHHHHhcCchHHHHHHhcCC----cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNS----NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~----~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
+|...|-. .++.+++.+.+. ..+..+..+|.||+..+++...+. ..++.|+.+|.+| +..++..++++|.|
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G-~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG-SEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 78887643 466666655443 234568899999999988888885 4799999999999 89999999999999
Q ss_pred hccCCCChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhcCcccHHHH-hcCCCCHHHHHHHh
Q 008437 372 LSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLATVL 437 (565)
Q Consensus 372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~~~~~r~~i-~~~~g~v~~Lv~lL 437 (565)
||.++.+...++.++++..++.|+... +..+...++.+..||..+-...... .....--..|..++
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~ 228 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLF 228 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHH
Confidence 999999999999999999999988664 6778899999999997754333222 21223445555444
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.43 E-value=7.5e-12 Score=124.84 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=168.1
Q ss_pred hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcC
Q 008437 255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 332 (565)
Q Consensus 255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~ 332 (565)
+.+++.++.|+.+|... .|+.+|+.|..+|.|.+. .+.++..|.+.|+++.+..+|..++. ++.|+.+|.||+.
T Consensus 8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 45677889999999863 689999999999999985 68999999999999999999998754 5779999999999
Q ss_pred CCCCchhhccCCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437 333 LDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 411 (565)
Q Consensus 333 ~~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~ 411 (565)
..+++..|-. .++.+.+.+.+. .+..++..++++|.||+..++.+..+. +.++.++.|+..++..++..++.+|.
T Consensus 84 ~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 84 NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999988853 577777655443 367889999999999998888877765 47999999988899999999999999
Q ss_pred HHhcCcccHHHHhcCCCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhcC
Q 008437 412 NLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-s~~~~e~Av~~L~~Lc~~ 458 (565)
||+.++.....++.. .++..++.++... +......++.+..+|..+
T Consensus 160 nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 160 NLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999998999886 8999999999874 677789999999999753
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.41 E-value=1.5e-12 Score=147.74 Aligned_cols=225 Identities=19% Similarity=0.118 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCchH
Q 008437 231 LGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN-KELMLAAGVIP 308 (565)
Q Consensus 231 ~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n-k~~i~~~G~i~ 308 (565)
...|..|..+|.+|+-.+..++..+.. .|+++.||..|.+ ...+++..-+.+|+||+..-+.| |+.+.+.|-+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 356888999999999988889998886 9999999999987 34567777778999999876666 45555678888
Q ss_pred HHHHHh-cC--CcHHHHHHHHHHHhcCC-CCCchhhcc-CCchHHHHHHhcCC---CCHHHHHHHHHHHHHhcc----CC
Q 008437 309 LLEKMI-SN--SNSHGAATALYLNLSFL-DDAKPIIGS-SHAVPFLVELCKGK---TEHQCKLDALHALYNLST----IP 376 (565)
Q Consensus 309 ~Lv~lL-~s--~~~~~~A~aaL~nLs~~-~~~k~~I~~-~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~----~~ 376 (565)
.|+..- .. ..+....+.+|+||+.+ .+||..|.+ .|++.+||.+|.-. ....+.+.|-++|.|.++ ++
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E 520 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE 520 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence 887754 32 24567789999999998 799999987 69999999999743 145678999999999874 55
Q ss_pred CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 377 SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 377 ~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
+.|..+.+.+++..|++.|++....++-+++++||||+. +++.++.+.++ |+|+.|..++.+.+..+-+-++.+|.||
T Consensus 521 ~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~-gAv~mLrnLIhSKhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 521 DYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD-GAVPMLRNLIHSKHKMIAMGSAAALRNL 599 (2195)
T ss_pred hHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc-ccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 677888889999999999999888889999999999987 67788888887 9999999999999999999999999998
Q ss_pred hcCCh
Q 008437 456 CNGNE 460 (565)
Q Consensus 456 c~~~~ 460 (565)
-.+.+
T Consensus 600 ln~RP 604 (2195)
T KOG2122|consen 600 LNFRP 604 (2195)
T ss_pred hcCCc
Confidence 77653
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3e-11 Score=125.01 Aligned_cols=258 Identities=19% Similarity=0.240 Sum_probs=197.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..||+.|... +.+.-.-.+..|..|+-. .+++..|.+.|.|+.|+++... .++.++...++.|+||+. +..
T Consensus 305 iV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSF-D~g 377 (791)
T KOG1222|consen 305 IVAMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSF-DSG 377 (791)
T ss_pred HHHHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccc-ccc
Confidence 456677888776 677777777888888744 4699999999999999999977 788999999999999996 678
Q ss_pred hhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC
Q 008437 297 NKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 376 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~ 376 (565)
++..|+..|.+|.|+.+|.+......|+..|+.+|++++.|.++.-..+|+.|.+.+-++.+.++-.+.+..-.|||.+.
T Consensus 378 lr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 378 LRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred ccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999999998877788999999999999999999888999999998877645544444443345777776
Q ss_pred CChHHHHHcCchHHHhh-ccC-------------------------------------CCChHHHHHHHHHHHHHhcCcc
Q 008437 377 SNIPNLLSAGIISGLQS-LAV-------------------------------------PGDPMWTEKSLAVLLNLAASAA 418 (565)
Q Consensus 377 ~nk~~iv~~G~v~~Lv~-Ll~-------------------------------------~~~~~~~e~al~~L~nLa~~~~ 418 (565)
.|...+++..++..|++ .++ +.+....-.|+++|+||...+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 66665555444443333 111 1234455689999999999999
Q ss_pred cHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC
Q 008437 419 GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG 482 (565)
Q Consensus 419 ~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~ 482 (565)
..+.|+.....||.+-..|..+ .....-..+-.+..+++ +..+...+..+|+|+.|+.|+..+
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhh
Confidence 9999999889999999888764 23334444444444444 444666777889999999887654
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=4.2e-10 Score=123.78 Aligned_cols=275 Identities=17% Similarity=0.182 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
....+...|.+. ++.+|.-+++.|+.++.+++.....+.+.+.++.++..|.+ ++..+...|+.+|.+|+. ++.
T Consensus 78 ~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~-~~~ 151 (503)
T PF10508_consen 78 YQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLAS-HPE 151 (503)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhC-Cch
Confidence 345566778876 89999999999999998777777778889999999999988 789999999999999996 455
Q ss_pred hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.-..++..+.+..|..++..++ .+-.+..++.+++.. ++....+..+|.++.+++.|+++ |.-++.+|+.+|..|+
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La 230 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELA 230 (503)
T ss_pred hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHH
Confidence 6667888888999999998743 356688888888765 56667777789999999999997 9999999999999999
Q ss_pred cCCCChHHHHHcCchHHHhhccCCC--Ch----HHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPG--DP----MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 447 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~--~~----~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~ 447 (565)
..+.+...+.+.|+++.|+.++.+. ++ -..--.+....+++... ....+...+..+..|.+++.+.++..+..
T Consensus 231 ~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~-~~~v~~~~p~~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 231 ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS-PQEVLELYPAFLERLFSMLESQDPTIREV 309 (503)
T ss_pred cChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 9889999999999999999966432 22 12223446666777742 22222233456666777778889999999
Q ss_pred HHHHHHHhhcCChHHHHHHHh-CCcHHHH----HHhhhcCChhHHHHHHHHHHHHHh
Q 008437 448 AVSCLFLLCNGNEKCCQMVLQ-EGVIPAL----VSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 448 Av~~L~~Lc~~~~~~~~~v~~-~G~v~~L----v~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
|+.+|..||...++....... .+.+... .....++....|.++...|..+-.
T Consensus 310 A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999999877754444233 3444444 345666788889888888888743
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.20 E-value=1.5e-10 Score=101.22 Aligned_cols=116 Identities=28% Similarity=0.267 Sum_probs=104.1
Q ss_pred hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc
Q 008437 340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 418 (565)
Q Consensus 340 I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~ 418 (565)
+.+.|+++.|+++|.++ +...+..|+.+|.+++.. ++.+..+++.|+++.|++++.+.+..++..++++|.||+....
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 45679999999999998 899999999999999987 6788899999999999998888899999999999999999775
Q ss_pred cH-HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 419 GK-EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 419 ~r-~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
.. ..+.. .|+++.|+++|...+...++.|+++|.+||.
T Consensus 82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 44 44555 4999999999999999999999999999984
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.5e-10 Score=119.86 Aligned_cols=217 Identities=20% Similarity=0.242 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC
Q 008437 279 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 356 (565)
Q Consensus 279 ~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~ 356 (565)
+...|+..|+||+. +-.....|+.-..+..||+.|+..+. .......|..||..++||..+++.|.++.|++++...
T Consensus 279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 44667788999984 45556677788899999999987653 3446777888999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHH
Q 008437 357 TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 436 (565)
Q Consensus 357 ~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~l 436 (565)
+++.++..+..|+|||.+..++.++|..|.+|.|+.++.+.... .-|+.+|..++..+..+..+.-+ .+|+.|.+.
T Consensus 358 -h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk~ 433 (791)
T KOG1222|consen 358 -HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYT-DCIKLLMKD 433 (791)
T ss_pred -CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999988765443 56899999999887777766665 899999998
Q ss_pred hhcCCHHHHHHHH-HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccCCCC
Q 008437 437 LDTGELIEQEQAV-SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPP 507 (565)
Q Consensus 437 L~~~s~~~~e~Av-~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~~~~ 507 (565)
+..+.......++ +.-.|||.+.. +.+.+.+..++..|++.... -+-..+++.+|...|++.+.
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k------~~D~lLmK~vRniSqHeg~t 498 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIK------SRDLLLMKVVRNISQHEGAT 498 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhc------ccchHHHHHHHHhhhccchH
Confidence 7765444333443 34467887665 46666676677888765432 33345677777777777654
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=5.4e-10 Score=97.71 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=108.0
Q ss_pred HHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 381 NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 381 ~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
.+++.|+++.|++++.+++..+++.++.+|.+++.. ++.+..++.. |+++.|+++|.+.++.+++.|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467899999999988888899999999999999997 7788888875 99999999999999999999999999999988
Q ss_pred hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 460 EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 460 ~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
+.....+.+.|+++.|+.++..++..+++.|..+|.+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 777888889999999999999999999999999999875
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.16 E-value=1.7e-11 Score=87.35 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=31.2
Q ss_pred ccccccccCCceecCCCcccchHHHHHHHhcCC---CCCCCC
Q 008437 75 CPISLQLMYDPVIIASGQTYERICIEKWLSDGH---STCPKT 113 (565)
Q Consensus 75 CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~---~~cP~t 113 (565)
||||+++|+|||+++|||+||+.||++|+.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 469976
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.12 E-value=2e-09 Score=110.55 Aligned_cols=278 Identities=12% Similarity=0.085 Sum_probs=211.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCC---HHHHHHHHHHHHHhhccCc
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERN---SYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~---~~~q~~A~~aL~nLa~~~~ 295 (565)
..|.+...+. +.++-.+..++|.+++..+.++|..+.+.|+-..++++|..-+...+ .+....+...|.|-...++
T Consensus 90 e~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 90 ELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 3444444554 78888999999999999999999999999998888888875443333 3556667788999888888
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc----HHHHHHHHHHHhcC-CCC-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN----SHGAATALYLNLSF-LDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~----~~~~A~aaL~nLs~-~~~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
+.+.++++.|+++.|..++.=+. -.+...+..+||.. ..+ .+....+......|+++|.+...++..+-...+|
T Consensus 169 ~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil 248 (604)
T KOG4500|consen 169 ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL 248 (604)
T ss_pred HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence 88999999999999999886442 23445555555433 222 2344445677788999998776777888899999
Q ss_pred HHhccCCCChHHHHHcCchHHHhhccCC-CC-------hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCC
Q 008437 370 YNLSTIPSNIPNLLSAGIISGLQSLAVP-GD-------PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 441 (565)
Q Consensus 370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~-------~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s 441 (565)
...+.++..+..+++.|.+.-+++++.. .+ ...-..+......|...++.-..+...+.++..++..+++.+
T Consensus 249 a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d 328 (604)
T KOG4500|consen 249 AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDD 328 (604)
T ss_pred HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCc
Confidence 9999999999999999999999997754 22 222334444555555566666677776558889999999888
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh-----cCChhHHHHHHHHHHHHH
Q 008437 442 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-----NGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 442 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-----~~s~~~k~~A~~lL~~L~ 498 (565)
...+-.++-++.|+++++. .+..+++.|.+.+|++++. .|+-+.+..+..+||+|.
T Consensus 329 ~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 329 SNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 8899999999999999987 4666788899999987543 367777888888888876
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=7e-11 Score=110.76 Aligned_cols=58 Identities=28% Similarity=0.614 Sum_probs=51.6
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccH
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD---------------GHSTCPKTQQKLPHLCLTPNY 126 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~---------------~~~~cP~t~~~l~~~~l~pn~ 126 (565)
..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4578999999999999999999999999999999852 246799999999999999985
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.8e-10 Score=120.53 Aligned_cols=72 Identities=24% Similarity=0.459 Sum_probs=64.7
Q ss_pred CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437 67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
..+...|.||||.++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|.++|+.|....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 345678999999999999999999999999999999986 458999999998778999999999999997644
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.96 E-value=2.2e-07 Score=102.43 Aligned_cols=279 Identities=15% Similarity=0.133 Sum_probs=206.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..++..|.+. +.++...|+..|..+++.. .....+...+.+..|..++.. .+..++.....++.+++..++
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCH
Confidence 4567788889887 9999999999999999754 455567788889999999976 467788889999999987778
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-CCH---H-HHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEH---Q-CKLDALHA 368 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-~~~---~-~~~~Al~a 368 (565)
+....+.+.|.++.++..|++.+. +.+|+.+|..|+..+.+...+.+.|+++.|+.++... .++ . ..-..+..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 888888889999999999998764 6779999999999988999999999999999999754 123 1 12223355
Q ss_pred HHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH-hcCCCCHHHHHHH----hhcCCHH
Q 008437 369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLATV----LDTGELI 443 (565)
Q Consensus 369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i-~~~~g~v~~Lv~l----L~~~s~~ 443 (565)
..+++...+....-.--..+..|.+++.+.+...+..|+.+|..++...+|+..+ ..+++.+..+++. ..++...
T Consensus 273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 5666664332222111234445555667788999999999999999999999999 5554454444444 4456778
Q ss_pred HHHHHHHHHHHhhcCChH----H----HHHH---HhCCcHH-HHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 444 EQEQAVSCLFLLCNGNEK----C----CQMV---LQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 444 ~~e~Av~~L~~Lc~~~~~----~----~~~v---~~~G~v~-~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
.+-.++.+|.+|-...+. . .... ...+-.. .|+.++...=+.+|-.|-.+|+.|..+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 999999999998432221 1 1111 1123333 556777777789999999999998754
No 31
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.5e-10 Score=106.63 Aligned_cols=76 Identities=36% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 141 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 141 (565)
..++|+.++|-|+.++|+|||+.++|.||+|..|++++..-....|+|+.+|+...++||..|+..|..|...|..
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 4568999999999999999999999999999999999998677899999999999999999999999999998864
No 32
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.87 E-value=6.4e-10 Score=84.57 Aligned_cols=44 Identities=36% Similarity=0.745 Sum_probs=31.5
Q ss_pred CcccccccccccCCceec-CCCcccchHHHHHHHh-cCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPKTQ 114 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~-~~~~~cP~t~ 114 (565)
-.|.||||+..|+|||+. .|||+|||++|.+|+. .+...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999985 7999999999999994 3456799954
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-07 Score=98.02 Aligned_cols=277 Identities=16% Similarity=0.093 Sum_probs=198.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-cC--CCH-HHHHHHHHHHHHhhccCc
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-CE--RNS-YAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-~s--~~~-~~q~~A~~aL~nLa~~~~ 295 (565)
.+++.|.+.-.++.+.-..+.+...+ +++..+..+++.|.++-++.++..-. .+ .+. ..-..++....-|..+ +
T Consensus 227 ~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG-D 304 (604)
T KOG4500|consen 227 MLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG-D 304 (604)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-c
Confidence 34444443323334433445555555 78889999999999999999997621 11 111 1122233322223333 3
Q ss_pred hhhHHHHhcC-chHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC----CCHHHHHHHHHH
Q 008437 296 RNKELMLAAG-VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALHA 368 (565)
Q Consensus 296 ~nk~~i~~~G-~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~----~~~~~~~~Al~a 368 (565)
+.-..+...+ .+..++.-+++.+.. ..++-++.|++..+++...+++.|.+..|+.+|... .+.+.+.+++.|
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 3433344444 788888888887654 346667889999999999999999999999999641 277899999999
Q ss_pred HHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc-cHHHHhcCCCCHHHHHHHhhcCCHH-HHH
Q 008437 369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELI-EQE 446 (565)
Q Consensus 369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~-~~e 446 (565)
|+||...-.||..++.+|+++.++..++...+.++..-+++|+.+....+ ...++..++..+..|++.-.+.+-. +.-
T Consensus 385 LRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g 464 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAG 464 (604)
T ss_pred HHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence 99999999999999999999999998888888999999999999988766 5557777777778888877664433 566
Q ss_pred HHHHHHHHhhcCCh--HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 447 QAVSCLFLLCNGNE--KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 447 ~Av~~L~~Lc~~~~--~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
...+.|..+-+++. .....+-+.|+|..++.......-..+..|.-+|-.+.
T Consensus 465 ESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 465 ESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred hhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 67777777777743 34455567788998888877777777777776666555
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.84 E-value=6.3e-08 Score=100.36 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=161.6
Q ss_pred CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc------CchHHHHHHhcCCcH--HHHHHHHHHHh
Q 008437 259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA------GVIPLLEKMISNSNS--HGAATALYLNL 330 (565)
Q Consensus 259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~------G~i~~Lv~lL~s~~~--~~~A~aaL~nL 330 (565)
+....++.+|... +.+.++.+..+..+-.+...++.....+... ....++++++.+++. ...|+.+|..|
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3456667777653 2467788888888888875555444444441 257888888887764 45577788887
Q ss_pred cCCCCCchhhccCCchHHHHHHhcCCC---CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc-------CCCCh
Q 008437 331 SFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA-------VPGDP 400 (565)
Q Consensus 331 s~~~~~k~~I~~~g~i~~Lv~lL~~~~---~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll-------~~~~~ 400 (565)
......+..-...+.++.++++|.+.. +.+.+..|+.+|.+|...++.|..+.+.|+++.|+.++ ...+.
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 766554444333567788888887631 34566889999999999999999999999999999976 22456
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCcHHHHHHh
Q 008437 401 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSI 478 (565)
Q Consensus 401 ~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~v~~Lv~L 478 (565)
.++..++-+||.|+..++....+..+ +.|+.|++++.. ..+++..-++++|.|+...+.. ....|+..|+.+.|-.|
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 77899999999999999999999987 699999999986 5788999999999999987763 67888888888887766
Q ss_pred hhc--CChhHHHHHHHH
Q 008437 479 SVN--GSTRGRDKAQRL 493 (565)
Q Consensus 479 ~~~--~s~~~k~~A~~l 493 (565)
... .++...+--..+
T Consensus 292 ~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HSS--SSHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHH
Confidence 665 567666554444
No 35
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.9e-09 Score=120.19 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=91.9
Q ss_pred ccccccCCCCCCchhhHHHHHhhhccCCCCCC--------------------CCCCCCCCCCCCcccccccccccCCcee
Q 008437 28 IQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPN--------------------NRRSGQMPLPPEELRCPISLQLMYDPVI 87 (565)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~p~~f~CpI~~~~m~dPV~ 87 (565)
...-+-..||+|+.+.|..+.+.++....++. ...+++.+++|++|..||+..+|+|||+
T Consensus 806 F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~ 885 (943)
T KOG2042|consen 806 FVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVV 885 (943)
T ss_pred HHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCCCcc
Confidence 33444556999999999999887744433321 1113457789999999999999999999
Q ss_pred cC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437 88 IA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 88 ~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
+| +|+|-||+.|++++.. ..+.|.|+++|+.+.++||..|+.-|+.|..++
T Consensus 886 LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 886 LPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 98 9999999999999985 678999999999999999999999999997754
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.79 E-value=3.5e-09 Score=74.42 Aligned_cols=38 Identities=39% Similarity=0.929 Sum_probs=33.4
Q ss_pred ccccccccCCc-eecCCCcccchHHHHHHHhcCCCCCCCC
Q 008437 75 CPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKT 113 (565)
Q Consensus 75 CpI~~~~m~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~t 113 (565)
||||.+.+.|| |+++|||+||+.||++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 7889986
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.77 E-value=8.4e-07 Score=94.46 Aligned_cols=272 Identities=17% Similarity=0.090 Sum_probs=193.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHH----HHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVV----ALLRFLESAVCERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~----~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~ 292 (565)
-+..++..|... +.-++..|+..|..++..+..... ....+ .|...|.+. .+...+..|+.+|..|..
T Consensus 102 ~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~~~----~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~ 173 (429)
T cd00256 102 TWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAKME----GSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLR 173 (429)
T ss_pred chHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccccc----hhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhC
Confidence 456777888776 888999999999999865443211 11333 334444432 246677888889988875
Q ss_pred cCchhhHHHHhcCchHHHHHHhcCCc----HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 293 NNNRNKELMLAAGVIPLLEKMISNSN----SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~----~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
.++.|..+.+.++++.|+.+|+... ..-.++-+++.||..++....+...+.|+.|+++++......+.+-++.+
T Consensus 174 -~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~ 252 (429)
T cd00256 174 -VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAI 252 (429)
T ss_pred -CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5789999999999999999998633 23448888899998877666666679999999999987677889999999
Q ss_pred HHHhccCC-------CChHHHHHcCchHHHhhccCC--CChHHHHHHH-------HHHHHHhcCc---------------
Q 008437 369 LYNLSTIP-------SNIPNLLSAGIISGLQSLAVP--GDPMWTEKSL-------AVLLNLAASA--------------- 417 (565)
Q Consensus 369 L~nLs~~~-------~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al-------~~L~nLa~~~--------------- 417 (565)
|.||.... .....|++.|+++.|-.|... .|+.+.+..- ..+..|++.+
T Consensus 253 l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp 332 (429)
T cd00256 253 FRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP 332 (429)
T ss_pred HHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC
Confidence 99998743 234567777776655555433 3554443222 2223333322
Q ss_pred ---------ccHHHHhcCC-CCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhH
Q 008437 418 ---------AGKEEMNSTP-GLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRG 486 (565)
Q Consensus 418 ---------~~r~~i~~~~-g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~ 486 (565)
+|...+-+.. ..+..|+++|.. .++....-|+-=+..++++-+.-+..+.+-|+=..++.|+.+.++++
T Consensus 333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V 412 (429)
T cd00256 333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV 412 (429)
T ss_pred CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence 3444444332 256788899864 56777777777888889877766777778898888899999999999
Q ss_pred HHHHHHHHHHH
Q 008437 487 RDKAQRLLMLF 497 (565)
Q Consensus 487 k~~A~~lL~~L 497 (565)
|..|-..++.|
T Consensus 413 r~eAL~avQkl 423 (429)
T cd00256 413 RYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999888875
No 38
>PRK09687 putative lyase; Provisional
Probab=98.75 E-value=1.3e-06 Score=89.01 Aligned_cols=232 Identities=14% Similarity=0.106 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
+..|+..|.+. +..+|..|+..|..+- ...+++.+..++.+ .++.++..|+++|..|.. .+..
T Consensus 25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~-~~~~ 87 (280)
T PRK09687 25 DDELFRLLDDH-NSLKRISSIRVLQLRG-----------GQDVFRLAIELCSS----KNPIERDIGADILSQLGM-AKRC 87 (280)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC-Cccc
Confidence 35667777665 7778877777776553 13345666666655 567777777777777642 1111
Q ss_pred hHHHHhcCchHHHHHHh-cCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 298 KELMLAAGVIPLLEKMI-SNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL-~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
...+++.|..++ ..++ .+..|+.+|.++...... ....+++.|..++.+. +..++..|+.+|..+.
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~- 156 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDK-STNVRFAVAFALSVIN- 156 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCC-CHHHHHHHHHHHhccC-
Confidence 123456666653 3332 244566666655321110 0112334444444444 5555555555553331
Q ss_pred CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437 375 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 454 (565)
Q Consensus 375 ~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~ 454 (565)
...+++.|+.++.+.+..++..|+.+|..+... .+..++.|+.+|.+.+..++..|+..|..
T Consensus 157 ---------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 157 ---------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ---------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 112455555555555555555555555554211 11333444444444444555555444432
Q ss_pred hhcCC-----------hHHHHH-------HHhCCcHHHHHHhhh-cCChhHHHHHHHHHH
Q 008437 455 LCNGN-----------EKCCQM-------VLQEGVIPALVSISV-NGSTRGRDKAQRLLM 495 (565)
Q Consensus 455 Lc~~~-----------~~~~~~-------v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~ 495 (565)
+-... +..+.. +-..-++|.|..++. +.+.+++.+|.+.|.
T Consensus 219 ~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 219 RKDKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred cCChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 11100 000000 001135777777765 678888888877765
No 39
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-08 Score=108.06 Aligned_cols=104 Identities=22% Similarity=0.221 Sum_probs=87.7
Q ss_pred CCCCCchhhHHHHHhhhccCCCCC--------------------CCCCCCCCCCCCCcccccccccccCCceecC-CCcc
Q 008437 35 GVHNGNEHAFDRQLSKLCSFNFRP--------------------NNRRSGQMPLPPEELRCPISLQLMYDPVIIA-SGQT 93 (565)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~p~~f~CpI~~~~m~dPV~~~-~g~t 93 (565)
.+|+|.-+.|.++.+.+..-..+. ..-.++++.++|++|+.|++..+|+|||+++ +|.|
T Consensus 797 D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~ 876 (929)
T COG5113 797 DKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRIT 876 (929)
T ss_pred ccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhhCchhhhcccCCeeccccccc
Confidence 389999999999986654444331 1112567899999999999999999999997 8999
Q ss_pred cchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437 94 YERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 94 y~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
.||+.|..++-. ..|.|..+.||+.++++||-.||.-|-.|....
T Consensus 877 IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 877 IDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred ccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 999999999985 678999999999999999999999999886543
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1e-06 Score=97.35 Aligned_cols=256 Identities=15% Similarity=0.116 Sum_probs=192.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.+..|+.-|....++..|.+|+.+|..... .+++.-..+--.-++|.|+.+|+.. .+.+++..|+++|.+|+---+
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhcc
Confidence 567888888876688889999999988754 3444444444577899999999875 578999999999999987678
Q ss_pred hhhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
+....+++.++||.|+.-|..- +..|++..+|..++.. .. .+|...|+|-..+..|+== +..+++.|+.+..|.
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~-~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HP-KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANC 321 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-cc-HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8889999999999999887653 4567888888888754 23 3455689998888887644 566899999999999
Q ss_pred ccC--CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcC----CH
Q 008437 373 STI--PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTG----EL 442 (565)
Q Consensus 373 s~~--~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~----s~ 442 (565)
|.. .+.=..++ .++|.|..+|...+....+.++-.+..++. .++--.++..+ |.|....++|... +.
T Consensus 322 Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVTPTILSN 398 (1051)
T ss_pred HhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcCcccccc
Confidence 953 23333333 378999998887788888888888887776 23344466666 8999999998653 23
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc
Q 008437 443 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN 481 (565)
Q Consensus 443 ~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~ 481 (565)
...--.++.|..+|++++-....++..++...|..++..
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 344556777788888877667777788888887766544
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.68 E-value=3.1e-07 Score=95.23 Aligned_cols=220 Identities=22% Similarity=0.176 Sum_probs=159.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc------cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA------NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~------~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~ 292 (565)
..++..+ + .+.+.....+..|..+..+++.....+.. ...+.++++++.+ +|..++..|+..|..|..
T Consensus 61 l~lL~~~-~-~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 61 LNLLNKL-S-SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc-c-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence 3455555 2 37888889999999999888766666554 1267888888876 689999999999999975
Q ss_pred cCchhhHHHHhcCchHHHHHHhcCCc------HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHh------cCCCCHH
Q 008437 293 NNNRNKELMLAAGVIPLLEKMISNSN------SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC------KGKTEHQ 360 (565)
Q Consensus 293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~------~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL------~~~~~~~ 360 (565)
..+.. ..-...+.++.++..|.+-. ....|+.+|.+|...+++|..+.+.++++.|+.+| .+..+.+
T Consensus 135 ~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 43322 22222567788888887531 12558899999999999999999999999999999 3344678
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCC-CChHHHHHHHHHHHHHhcCcc--cHHHHhcCCCCHHHHHHHh
Q 008437 361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA--GKEEMNSTPGLVSGLATVL 437 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~~~~~e~al~~L~nLa~~~~--~r~~i~~~~g~v~~Lv~lL 437 (565)
.+-.++-+|+-|+.+++....+...+.|+.|+++++. ....+..-++++|.||..... ....|+.+ +++ .+++.|
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~-~~l-~~l~~L 291 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC-GLL-KTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-cHH-HHHHHH
Confidence 8999999999999999999999999999999996644 567889999999999999777 78888875 444 445555
Q ss_pred hc---CCHHHHHH
Q 008437 438 DT---GELIEQEQ 447 (565)
Q Consensus 438 ~~---~s~~~~e~ 447 (565)
.. ++++..+.
T Consensus 292 ~~rk~~Dedl~ed 304 (312)
T PF03224_consen 292 SERKWSDEDLTED 304 (312)
T ss_dssp HSS--SSHHHHHH
T ss_pred hcCCCCCHHHHHH
Confidence 43 46665553
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.67 E-value=9.7e-09 Score=73.26 Aligned_cols=36 Identities=25% Similarity=0.752 Sum_probs=23.4
Q ss_pred ccccccccCC----ceecCCCcccchHHHHHHHhcC---CCCCC
Q 008437 75 CPISLQLMYD----PVIIASGQTYERICIEKWLSDG---HSTCP 111 (565)
Q Consensus 75 CpI~~~~m~d----PV~~~~g~ty~r~~I~~~~~~~---~~~cP 111 (565)
||||.+ |.+ ||+++|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 45577
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=5.6e-06 Score=91.14 Aligned_cols=259 Identities=16% Similarity=0.197 Sum_probs=189.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
|.|+.|+.++.+..-.+.|+.|+..|+.+++ .+|..++..| +++|+..|... ..|+++-..++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCc
Confidence 6889999999887567999999999999996 5788887776 89999999873 3688999999999999976543
Q ss_pred ------hhh----------HHHH-hcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhcc-CCchHHHHHHh
Q 008437 296 ------RNK----------ELML-AAGVIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGS-SHAVPFLVELC 353 (565)
Q Consensus 296 ------~nk----------~~i~-~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~-~g~i~~Lv~lL 353 (565)
..+ ..++ ..+-|..|+..+..-+ .+-.++-.+.+|-.. .+.+.++.. +-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 112 2233 3478888888887654 345577777775433 456666655 68999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhccCCCChHHHHH-cCchHHHhhccCC-C---ChHHHHHHHHHHHHHhcCcccHHHHhcCCC
Q 008437 354 KGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVP-G---DPMWTEKSLAVLLNLAASAAGKEEMNSTPG 428 (565)
Q Consensus 354 ~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~-~---~~~~~e~al~~L~nLa~~~~~r~~i~~~~g 428 (565)
++. ...++..|+-.|..|+.+..+..++|. .++...|+.++.. | ...+.+.|+.+|-||-.....-..+...++
T Consensus 176 ~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 176 RDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred hhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 987 777999999999999998888888876 7899999997744 2 346789999999999986554444444459
Q ss_pred CHHHHHHHhhc---CCH----HH------HHHHHHHHHHhhcCC------hHHHHHHHhCCcHHHHHHhhhc
Q 008437 429 LVSGLATVLDT---GEL----IE------QEQAVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVN 481 (565)
Q Consensus 429 ~v~~Lv~lL~~---~s~----~~------~e~Av~~L~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~ 481 (565)
.|+.|.++|.. ++. +. --.|+.++..|...+ ..+.+++.+.+++..|..++..
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH 326 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence 99999998864 332 11 112333444444322 1233566678889998765444
No 44
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.61 E-value=1.6e-08 Score=100.41 Aligned_cols=67 Identities=25% Similarity=0.446 Sum_probs=62.2
Q ss_pred CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437 71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 138 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 138 (565)
+-++|-||.+.|+-||+++||||||--||.+++.. ++.||.|..++....|+-|..|..+|+.+-..
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 45899999999999999999999999999999986 88999999999999999999999999998554
No 45
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.58 E-value=4.1e-08 Score=69.68 Aligned_cols=39 Identities=41% Similarity=1.010 Sum_probs=36.3
Q ss_pred ccccccccCCce-ecCCCcccchHHHHHHHh-cCCCCCCCC
Q 008437 75 CPISLQLMYDPV-IIASGQTYERICIEKWLS-DGHSTCPKT 113 (565)
Q Consensus 75 CpI~~~~m~dPV-~~~~g~ty~r~~I~~~~~-~~~~~cP~t 113 (565)
||||.+.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 667789986
No 46
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.3e-08 Score=93.12 Aligned_cols=57 Identities=26% Similarity=0.577 Sum_probs=51.7
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccH
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCLTPNY 126 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l~pn~ 126 (565)
-..|.|-||++.-+|||++.|||-||=.||-+|+.- +...||+|+..++.+.++|-+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 368999999999999999999999999999999973 456689999999999999965
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.49 E-value=4e-08 Score=74.95 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=33.8
Q ss_pred cccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437 72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 132 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i 132 (565)
-++|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|..|-...++.-|..|..+|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 47899999999999965 79999999999887653 399999998889999999999887
No 48
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.46 E-value=2.5e-05 Score=92.14 Aligned_cols=225 Identities=18% Similarity=0.164 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..|+..|.+. ++.+|..|+..|..+. ..++++.|+..|.+ .+..++..|+.+|..+....+
T Consensus 622 ~~~~L~~~L~D~-d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~- 684 (897)
T PRK13800 622 SVAELAPYLADP-DPGVRRTAVAVLTETT-----------PPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLP- 684 (897)
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccC-
Confidence 456788888887 9999999999988764 24568888888876 678888888888877632101
Q ss_pred hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-----------CCC--c----hhhccCCchHHHHHHhcCCC
Q 008437 297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-----------DDA--K----PIIGSSHAVPFLVELCKGKT 357 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-----------~~~--k----~~I~~~g~i~~Lv~lL~~~~ 357 (565)
..+.|...|.+.+. +..|+.+|..+... ++. + ..++..+..+.|..+|.+.
T Consensus 685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~- 754 (897)
T PRK13800 685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDE- 754 (897)
T ss_pred ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-
Confidence 12344455554432 22233333322100 000 0 0001111223333444443
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL 437 (565)
++.++..++.+|..+... +...++.|+.++.+.++.++..|+..|..+...+ ..+..|+..|
T Consensus 755 ~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL 816 (897)
T PRK13800 755 NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAAL 816 (897)
T ss_pred CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHh
Confidence 444444444444443221 1123556666666666677777777666653311 1223344455
Q ss_pred hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
.+.++.++..|+.+|..+.. .-+++.|+.++.+.+..+|..|...|..+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 55555555555555544321 12235566666666666666666666554
No 49
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.45 E-value=1.4e-07 Score=70.13 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=41.1
Q ss_pred CcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
+++.|+||++-+.|+++++|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46889999999999999999999 99999999998 5788999998864
No 50
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.43 E-value=1.6e-07 Score=92.15 Aligned_cols=49 Identities=20% Similarity=0.600 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCc--------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 69 PPEELRCPISLQLMYDP--------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dP--------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
...+..||||++.+.+| |+++|||+||+.||.+|+.. +.+||.|++++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 35678999999987764 56689999999999999985 789999998875
No 51
>PRK09687 putative lyase; Provisional
Probab=98.42 E-value=7.7e-06 Score=83.32 Aligned_cols=192 Identities=16% Similarity=0.046 Sum_probs=137.5
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK 337 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k 337 (565)
-++.|+.+|.+ .+..++..|+.+|..+. + ..+++.+..++.+++. +..|+.+|..|-..+..
T Consensus 24 ~~~~L~~~L~d----~d~~vR~~A~~aL~~~~--~---------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 24 NDDELFRLLDD----HNSLKRISSIRVLQLRG--G---------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred cHHHHHHHHhC----CCHHHHHHHHHHHHhcC--c---------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence 47788888877 78889999999998764 1 3457788888887754 56688888776432211
Q ss_pred hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437 338 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 338 ~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~ 417 (565)
...+++.|..++.++.++.++..|+.+|.+++....+. ..-+++.|..++.+.+..++..++.+|..+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 22467888888444338999999999999997543222 11245556676777788999999999965432
Q ss_pred ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~ 495 (565)
..+++.|+.+|.+.++.++..|+.+|..+...++ .+++.|+.++.+.+..+|..|...|.
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3578999999999999999999999998843332 33555666666666667666666664
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.5e-05 Score=79.96 Aligned_cols=182 Identities=21% Similarity=0.179 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 308 (565)
Q Consensus 229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~ 308 (565)
.+.+.+..|+..|..++ ++-++-..+...|++..|+.+|.+ .+..+++.|+++|...+.+|+.....+++.|+++
T Consensus 95 ~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred CCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 37899999999999999 566788899999999999999988 7899999999999999988899999999999999
Q ss_pred HHHHHhcCCc---HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCC-ChHHH
Q 008437 309 LLEKMISNSN---SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS-NIPNL 382 (565)
Q Consensus 309 ~Lv~lL~s~~---~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~-nk~~i 382 (565)
.|+.+|.+.. .+..|..++.+|-.+ ......+-..++...|..+|.++ .+...+..|+-.|..|...+. ....+
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999998653 245577777776555 34455555567799999999985 378889999999999886543 44444
Q ss_pred HHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 383 LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 383 v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
-..|....++.+....+..+.+.++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 445555556666666666777777776665555
No 53
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2e-07 Score=95.32 Aligned_cols=70 Identities=27% Similarity=0.569 Sum_probs=61.0
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 141 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 141 (565)
..+++.||||++.|++|++++|||+|||.||+.++. +...||.|+. .. ..+.+|..+..+++.....+..
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999998 6678999986 32 2778999999999998876654
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.37 E-value=2e-07 Score=91.04 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=60.9
Q ss_pred CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437 71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 138 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 138 (565)
.-++|-||...++-|++++||||||--||.+++.. ++.||+|+.+....-|.-+..++..++.+...
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 35799999999999999999999999999999986 89999999998888888999999999888654
No 55
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=7.4e-06 Score=90.80 Aligned_cols=158 Identities=19% Similarity=0.171 Sum_probs=131.5
Q ss_pred cCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCccc
Q 008437 342 SSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAG 419 (565)
Q Consensus 342 ~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~ 419 (565)
-.-.+|.||.||+.+.+.+.+..|++||++|+. .+.....+|+.++||.|++ |+.=....+.|.++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 356889999999998889999999999999994 7788999999999999999 776677888999999999998843
Q ss_pred HHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 420 r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
-.+|+.. |++...+.+|+--+..+|..|+++..|.|..=. +.-..++ .++|.|..|+...+.+.-+.+...+..+.
T Consensus 287 ~~AiL~A-G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQA-GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 2466665 999999999998889999999999999997321 1223333 35899999999999999999888888887
Q ss_pred hhcccC
Q 008437 499 EQRQRD 504 (565)
Q Consensus 499 ~~r~~~ 504 (565)
+.-++.
T Consensus 364 d~f~h~ 369 (1051)
T KOG0168|consen 364 DGFQHG 369 (1051)
T ss_pred HhcccC
Confidence 765554
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.3e-05 Score=82.01 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=149.3
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHH
Q 008437 275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVE 351 (565)
Q Consensus 275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~ 351 (565)
.+.+-++.|+.-|..+. ++-+|-.-+...|+..+++..|.+++. ++.|+.+|...+.+ +..+..+.+.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 46777888888888886 567788889999999999999988754 67799999987765 677888899999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHHHhcCcccHHHHhcCCC
Q 008437 352 LCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKEEMNSTPG 428 (565)
Q Consensus 352 lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g 428 (565)
+|.+..+..++..|+.|++.|-.+. .....+...++...|...+.+ .+..++.+++..|..|.........++..-+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 9997756778899999999998765 467777888899999997766 6788899999999999885544444555447
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
....+..+....+....|+|+.++..+..
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 77777888888889999999998877554
No 57
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.31 E-value=5.9e-07 Score=64.30 Aligned_cols=44 Identities=39% Similarity=0.973 Sum_probs=39.2
Q ss_pred cccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 74 RCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
.||||++.+.+|+.+. |||.|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999776 9999999999999998778899998653
No 58
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.31 E-value=5e-05 Score=89.65 Aligned_cols=227 Identities=18% Similarity=0.092 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.|+..|.+. +..+|..|+..|..+....+ ..+.|...|.+ .++.++..|+.+|..+...+.
T Consensus 652 ~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~~~~ 716 (897)
T PRK13800 652 GFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP----------PAPALRDHLGS----PDPVVRAAALDVLRALRAGDA 716 (897)
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC----------chHHHHHHhcC----CCHHHHHHHHHHHHhhccCCH
Confidence 3457788888776 99999999999988752111 12455566655 566677777666655421100
Q ss_pred ------------hhhHHHH----hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC
Q 008437 296 ------------RNKELML----AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT 357 (565)
Q Consensus 296 ------------~nk~~i~----~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~ 357 (565)
..|...+ ..+..+.|..+|..++. +..++.+|..+... ....++.|..++.+.
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~- 787 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP- 787 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-
Confidence 0000000 01112333344433321 23334344333210 123478999999988
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL 437 (565)
++.++..|+.+|.++-... .++..|+..+.+.+..++..|+.+|..+.. ...++.|+.+|
T Consensus 788 d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L 847 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEAL 847 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHh
Confidence 8999999999998884321 123557777788889999999999987642 35779999999
Q ss_pred hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHH
Q 008437 438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 496 (565)
Q Consensus 438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~ 496 (565)
.+.+..++..|+.+|..+- .++ .+.+.|..++.+.+..+|..|..+|..
T Consensus 848 ~D~~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cCCCHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999998862 222 236677788889999999999998863
No 59
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.29 E-value=3.7e-06 Score=74.26 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=125.5
Q ss_pred CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
.+.+..||.-..+..+.++++....-|.|.+.++-|-..+.+..+++..+.-+...+..+.+..++.|+|||....+.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 45677788777776689999999999999999999999999999999999977788899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437 423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~ 495 (565)
|++. ++++.++..+.+.....--.|+.+|..||..+...+..+....++..+.....+.+.+.+--|...|.
T Consensus 95 I~ea-~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 95 IREA-LGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHh-cCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9986 99999999998877888889999999999988766777777776666655444444444444444443
No 60
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.27 E-value=5.1e-05 Score=81.02 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=158.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-----cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-----~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
.+..++..|+.....++....+.-+..+...++..-..+.+ .....+++.+|.+ +|.-++..|+..|..|.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHH
Confidence 45667788877657788888888888888776654444444 3567788888875 67788999999888886
Q ss_pred ccCchhhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC-CHHHHHHHHH
Q 008437 292 VNNNRNKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT-EHQCKLDALH 367 (565)
Q Consensus 292 ~~~~~nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~-~~~~~~~Al~ 367 (565)
.....+.......-.+..|...|+++ .....++..|..|...+++|..+.+.++++.|+.+|+... +.+.+=.++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 43322211110011233455556543 2345578889899999999999988889999999998753 5688999999
Q ss_pred HHHHhccCCCChHHHHHcCchHHHhhccCC-CChHHHHHHHHHHHHHhcCcc-------cHHHHhcCCCCHHHHHHHhhc
Q 008437 368 ALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA-------GKEEMNSTPGLVSGLATVLDT 439 (565)
Q Consensus 368 aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~~~~~e~al~~L~nLa~~~~-------~r~~i~~~~g~v~~Lv~lL~~ 439 (565)
+|+-|+.+++....+.+.|.|+.|+++++. ....+..-++++|.||..... ....|+.. | ++.++..|..
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~-l~~~l~~L~~ 287 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-K-VLKTLQSLEQ 287 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-C-hHHHHHHHhc
Confidence 999999988877777778999999997654 467888999999999998542 23455653 4 4555565543
Q ss_pred ---CCHHHHH
Q 008437 440 ---GELIEQE 446 (565)
Q Consensus 440 ---~s~~~~e 446 (565)
++++..+
T Consensus 288 rk~~DedL~e 297 (429)
T cd00256 288 RKYDDEDLTD 297 (429)
T ss_pred CCCCcHHHHH
Confidence 4555444
No 61
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.25 E-value=4.3e-07 Score=65.50 Aligned_cols=40 Identities=33% Similarity=0.855 Sum_probs=33.7
Q ss_pred cccccccccC---CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 008437 74 RCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQ 114 (565)
Q Consensus 74 ~CpI~~~~m~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~ 114 (565)
.||||++-|. +++.++|||.|.+.||.+|+.. +.+||+|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999884 5667899999999999999987 56999984
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.23 E-value=2.8e-05 Score=81.27 Aligned_cols=266 Identities=16% Similarity=0.154 Sum_probs=182.3
Q ss_pred hHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437 216 ERYQDFLNVLNEGENL--GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~--~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~ 293 (565)
+++..|++++... +. .++.+|.+.|..+.. .+||..++..| +..++.+-+. ...++.+...+.+|.++-++
T Consensus 180 ~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 180 GGLDLLLRMFQAP-NLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKH 252 (832)
T ss_pred chHHHHHHHHhCC-chhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhh
Confidence 4567788888876 54 458899999998863 46888888766 5555554433 15678888889999999988
Q ss_pred CchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 294 NNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 294 ~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
+++....++++|++..++--.+..+. -.+++-+|.|.+.+ .+.+..|.+..+-+-|+-|-.+. +.-.+-.|+-|.
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHH
Confidence 88889999999999998887776543 46688888887765 45677777777777777777777 778899999999
Q ss_pred HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437 370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449 (565)
Q Consensus 370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av 449 (565)
+-|+.+.+.-..+.+.|-+..+-.++..-++..- +. +....+-...+.-+..|+-+|++ ......++
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------AR-D~hd~aQG~~~d~LqRLvPlLdS--~R~EAq~i 398 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------AR-DAHDYAQGRGPDDLQRLVPLLDS--NRLEAQCI 398 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hh-hhhhhhccCChHHHHHhhhhhhc--chhhhhhh
Confidence 9999988877666666644322224433333211 11 11112223334567788888873 44445566
Q ss_pred HHHHHhhcCC----hHH-HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437 450 SCLFLLCNGN----EKC-CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 450 ~~L~~Lc~~~----~~~-~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
++.+ +|... ... ...+-+-|+|+.|-.+..+.+...-.-|..+|..+-+.-+.
T Consensus 399 ~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~ 456 (832)
T KOG3678|consen 399 GAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPY 456 (832)
T ss_pred HHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccCh
Confidence 6654 34321 112 23344559999999998888887778888999988765433
No 63
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00058 Score=68.51 Aligned_cols=268 Identities=16% Similarity=0.177 Sum_probs=182.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
...++.+|.+. ++.+|..|+..+-.++.. ..+..... .-.++.|.+++... ++ -+.|+.+|.|++. +..
T Consensus 5 l~elv~ll~~~-sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~----~~--~~~a~~alVnlsq-~~~ 74 (353)
T KOG2973|consen 5 LVELVELLHSL-SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL----DP--AEPAATALVNLSQ-KEE 74 (353)
T ss_pred HHHHHHHhccC-ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc----cc--ccHHHHHHHHHHh-hHH
Confidence 45788889887 899999999999888765 34444332 55678888888762 22 5678899999985 677
Q ss_pred hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhcc-------CCchHHHHHHhcCCCCH-HHHHHHH
Q 008437 297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGS-------SHAVPFLVELCKGKTEH-QCKLDAL 366 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~-------~g~i~~Lv~lL~~~~~~-~~~~~Al 366 (565)
.++.++.. .+..++.++-.+. -....+.+|.||+..++....+.. .|.+...+...+.+.+. .-...-+
T Consensus 75 l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 75 LRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA 153 (353)
T ss_pred HHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence 78888777 7888888887662 245578889999988765433321 34444444555544221 2345567
Q ss_pred HHHHHhccCCCChHHHHHcCchH--HHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHH--------
Q 008437 367 HALYNLSTIPSNIPNLLSAGIIS--GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV-------- 436 (565)
Q Consensus 367 ~aL~nLs~~~~nk~~iv~~G~v~--~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~l-------- 436 (565)
-++.||+.....|..+.+...++ .|+.+-..++.--+.-.+++|.|.|........++.. .+..|..+
T Consensus 154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e--~~~lLp~iLlPlagpe 231 (353)
T KOG2973|consen 154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE--SINLLPAILLPLAGPE 231 (353)
T ss_pred HHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcc--hHHHHHHHHhhcCCcc
Confidence 77889999888888887755332 2333333233333456789999999887777776652 23333332
Q ss_pred ----------------hh-----cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHH
Q 008437 437 ----------------LD-----TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLL 494 (565)
Q Consensus 437 ----------------L~-----~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL 494 (565)
|. ..++.++..-+.+|..||....+ ++.+..-|+.|.|-.+-.. .++..++..-.+.
T Consensus 232 e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 232 ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 22 13578888999999999986654 7778888999988887666 4667777777777
Q ss_pred HHHHh
Q 008437 495 MLFRE 499 (565)
Q Consensus 495 ~~L~~ 499 (565)
.+|-+
T Consensus 311 q~Lv~ 315 (353)
T KOG2973|consen 311 QMLVR 315 (353)
T ss_pred HHHHh
Confidence 77664
No 64
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.17 E-value=1.6e-06 Score=59.75 Aligned_cols=39 Identities=49% Similarity=1.107 Sum_probs=36.1
Q ss_pred ccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCC
Q 008437 75 CPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKT 113 (565)
Q Consensus 75 CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t 113 (565)
||||++...+|++++|||.|+..||..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789976
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.15 E-value=1.6e-05 Score=70.34 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=104.6
Q ss_pred chHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHH
Q 008437 306 VIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNL 382 (565)
Q Consensus 306 ~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~i 382 (565)
.+..||.=.... +.++...+-|.|.+.++.|-..+.+..+++..|.-|.+. +....+.++..|+|||.+..|+..|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHHH
Confidence 355555544433 456778899999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHH
Q 008437 383 LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATV 436 (565)
Q Consensus 383 v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~l 436 (565)
++++++|.++..+.+....+.-.++..|..|+... ..|..+.. +.++..+.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHH
Confidence 99999999999887888888889999999998854 34555554 2444443333
No 66
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.2e-06 Score=84.57 Aligned_cols=56 Identities=21% Similarity=0.523 Sum_probs=48.5
Q ss_pred CCCCC-CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437 66 MPLPP-EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 122 (565)
Q Consensus 66 ~~~~p-~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 122 (565)
.+.+| ..+.|-||++-+.||--++|||.||=.||..|..+ ..-||.|++.+.+..+
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 44455 56999999999999999999999999999999987 5569999998877654
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.09 E-value=4.5e-06 Score=86.11 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=47.8
Q ss_pred ccccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 73 LRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
+.|.|++++-++||+.+ +||.|||+.|++++.+ +.+||+|+++|+.++|+|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 57999999999999987 9999999999999997 6789999999999888773
No 68
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-06 Score=79.51 Aligned_cols=53 Identities=25% Similarity=0.559 Sum_probs=44.2
Q ss_pred CcccccccccccCCc--eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 008437 71 EELRCPISLQLMYDP--VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 124 (565)
Q Consensus 71 ~~f~CpI~~~~m~dP--V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 124 (565)
.-|.||||++-+..= |.+.|||.||+.||...+.. ...||.|++.+++.++.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 349999999887664 45789999999999999986 457999999888777654
No 69
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=5.7e-06 Score=83.60 Aligned_cols=63 Identities=19% Similarity=0.395 Sum_probs=47.3
Q ss_pred Cccccccccc-ccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC----CcccHHHHHHHH
Q 008437 71 EELRCPISLQ-LMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC----LTPNYCVKGLIA 133 (565)
Q Consensus 71 ~~f~CpI~~~-~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~----l~pn~~l~~~i~ 133 (565)
++..||+|+. ....|= +.+|||+||++||..+|..|...||.|+.++.... +.++..+.+.|.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 4678999996 344552 23699999999999999888889999999987755 455555544443
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.01 E-value=6.3e-06 Score=80.95 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=58.5
Q ss_pred ccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCC-CCCCCCCcccHHHHHHHHHHHHHc
Q 008437 73 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQ-KLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~-~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
+.||+|+.|+++||-+ +|||+||.+||+..|.+....||.|.. .+-.+.|.|++..+..|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999966 799999999999999888899999954 344567999999999999987743
No 71
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.98 E-value=0.00022 Score=79.03 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=62.2
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 424 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~ 424 (565)
.++.+..+|++. ++.+.-.|+.++..+..... .-..+++.|+.++.+.+..++..++..|..++... ...+.
T Consensus 232 ~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~ 303 (526)
T PF01602_consen 232 IIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF 303 (526)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG
T ss_pred HHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh
Confidence 334444444433 34444444444444433222 22345555555555555556666666666665533 22222
Q ss_pred cCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHHHHHHHhh
Q 008437 425 STPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 425 ~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+ ....+..+. +.+..++..++.+|..++... +... +++.|...+ ..++...++.+...+..+...
T Consensus 304 -~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 304 -N---QSLILFFLLYDDDPSIRKKALDLLYKLANES--NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp -T---HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred -h---hhhhhheecCCCChhHHHHHHHHHhhccccc--chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 1 222233333 455566666666666666422 2222 344555444 333555666666655555533
No 72
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.96 E-value=0.00034 Score=77.50 Aligned_cols=248 Identities=14% Similarity=0.130 Sum_probs=154.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.+...|.+. ++.+|.+|+..+..+.+.+++. +... .++.|.++|.+ .++.++..|+.+|..+ ..+++
T Consensus 115 l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 115 LIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD----KDPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp HHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHH-HCTHH
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC----CcchhHHHHHHHHHHH-ccCcc
Confidence 345566777776 8999999999999998776542 2223 68899999976 6789999999988888 22222
Q ss_pred hhHH--------HH---hcC---chHHHHHHhcC---Cc--HH--HH-------------------HHHHHHHhcCCCCC
Q 008437 297 NKEL--------ML---AAG---VIPLLEKMISN---SN--SH--GA-------------------ATALYLNLSFLDDA 336 (565)
Q Consensus 297 nk~~--------i~---~~G---~i~~Lv~lL~s---~~--~~--~~-------------------A~aaL~nLs~~~~~ 336 (565)
.-.. +. ... +.-.++++|.. .. .. .. ++.++..+...
T Consensus 185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~--- 261 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS--- 261 (526)
T ss_dssp HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---
T ss_pred hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---
Confidence 2000 00 000 11122222221 00 01 00 11112212111
Q ss_pred chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc
Q 008437 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 337 k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
.. ....+++.|+++|.+. ++..+-.++.+|..++... ...+. .....+. +..+.+..++..++.+|..++.
T Consensus 262 ~~--~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 262 PE--LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HH--HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hH--HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 11 1235789999999977 8889999999999998765 33444 2233333 4457889999999999999997
Q ss_pred CcccHHHHhcCCCCHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437 416 SAAGKEEMNSTPGLVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494 (565)
Q Consensus 416 ~~~~r~~i~~~~g~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL 494 (565)
+.+...+ +..|.+.+ ...++..++.++..+..+|...+... +-.+..|+.++..+.+.+...+...+
T Consensus 334 -~~n~~~I------l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~-----~~~v~~l~~ll~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 334 -ESNVKEI------LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA-----EWYVDTLLKLLEISGDYVSNEIINVI 401 (526)
T ss_dssp -HHHHHHH------HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH-----HHHHHHHHHHHHCTGGGCHCHHHHHH
T ss_pred -ccchhhH------HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH-----HHHHHHHHHhhhhccccccchHHHHH
Confidence 5555554 45688888 44588899999999999886443211 12478888988876666665555555
Q ss_pred HHH
Q 008437 495 MLF 497 (565)
Q Consensus 495 ~~L 497 (565)
..+
T Consensus 402 ~~l 404 (526)
T PF01602_consen 402 RDL 404 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 73
>PHA02926 zinc finger-like protein; Provisional
Probab=97.92 E-value=6.5e-06 Score=78.35 Aligned_cols=56 Identities=18% Similarity=0.462 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCC---------ceecCCCcccchHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 008437 68 LPPEELRCPISLQLMYD---------PVIIASGQTYERICIEKWLSDG-----HSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~d---------PV~~~~g~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pn 125 (565)
...++..|+||++...+ ++..+|||+||..||.+|.... ..+||.|++.+. .++|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 45667899999988654 4677899999999999999742 356999998875 34554
No 74
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.91 E-value=9.7e-05 Score=80.43 Aligned_cols=128 Identities=20% Similarity=0.134 Sum_probs=103.4
Q ss_pred hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc
Q 008437 340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 418 (565)
Q Consensus 340 I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~ 418 (565)
.....++.+||++|..+ +..++..++++|+||.. ...-|..+++.|+|+.|..++.+.+..++..++++|+++....+
T Consensus 415 ~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 44467899999999888 88999999999999996 55679999999999999998888899999999999999998665
Q ss_pred cHHHHh-cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q 008437 419 GKEEMN-STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ 468 (565)
Q Consensus 419 ~r~~i~-~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~ 468 (565)
...... ...=.-..|+.+..+.+..++|.|...|.||..+..+....+++
T Consensus 494 e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 494 EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 444332 11123455677778889999999999999999886554444443
No 75
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.90 E-value=0.0019 Score=67.37 Aligned_cols=274 Identities=16% Similarity=0.138 Sum_probs=181.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-------cCCHHHHHHHhcccccCCCHHHHHHHHHHHH
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-------NGFVVALLRFLESAVCERNSYAQEIGAMALF 288 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-------~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~ 288 (565)
+.+..++..|+.....+...-++..+..+..++. .|..+.. .-..+..+.+|.. .+.-+.+.+..+|.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r----~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR-SRVDLFHDYAHKLKRTEWLSFLNLLNR----QDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHhhhccchHHHHHHHhc----CChHHHHHHHHHHH
Confidence 4556677777665445556666666766665543 3333221 2235667788866 67777887888888
Q ss_pred HhhccCchhhHHHHhcC-chHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHh-cCCCCHHHHH
Q 008437 289 NLAVNNNRNKELMLAAG-VIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC-KGKTEHQCKL 363 (565)
Q Consensus 289 nLa~~~~~nk~~i~~~G-~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~ 363 (565)
.++..... +....+-. ....|...|.++ +....|+.+|..+...+++|..+....++..|+..| .+..+.+.+=
T Consensus 140 ~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQY 218 (442)
T KOG2759|consen 140 KLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQY 218 (442)
T ss_pred HHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHH
Confidence 87754221 11111111 134455556553 345668889999999999999999988899999998 3334788999
Q ss_pred HHHHHHHHhccCCCChHHHHHcCchHHHhhccCC-CChHHHHHHHHHHHHHhcCcc-------cHHHHhcCCCCHHHHHH
Q 008437 364 DALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA-------GKEEMNSTPGLVSGLAT 435 (565)
Q Consensus 364 ~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~-~~~~~~e~al~~L~nLa~~~~-------~r~~i~~~~g~v~~Lv~ 435 (565)
..+-+++-|+.++.....+...+.|+.|++++++ ....+..-+++++.|+..... ....|+.. .++.-++
T Consensus 219 qsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~--~v~k~l~ 296 (442)
T KOG2759|consen 219 QSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC--KVLKTLQ 296 (442)
T ss_pred HHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc--CchHHHH
Confidence 9999999999999888888888999999998765 356778889999999998763 33344442 3333333
Q ss_pred Hhhc---CCHHH---------------------------------------------HHH----------HHHHHHHh--
Q 008437 436 VLDT---GELIE---------------------------------------------QEQ----------AVSCLFLL-- 455 (565)
Q Consensus 436 lL~~---~s~~~---------------------------------------------~e~----------Av~~L~~L-- 455 (565)
.|.. +++.. +|+ -+.+|..|
T Consensus 297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe 376 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLE 376 (442)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHh
Confidence 3322 11100 111 12233222
Q ss_pred ------------------hcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 456 ------------------CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 456 ------------------c~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
-+..++-+..+.+-|+=..++.|+...++++|-.|..+++.|
T Consensus 377 ~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 377 TSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred cCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 223344466677789999999999999999999999888775
No 76
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.2e-06 Score=86.48 Aligned_cols=69 Identities=25% Similarity=0.373 Sum_probs=57.4
Q ss_pred CCCCCcccccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 008437 67 PLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASW 135 (565)
Q Consensus 67 ~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~i~~~ 135 (565)
..+-.+|.||||+.+++--+++. |+|.||+.||.+-+..|+..||.|++.+.. ..|.++...-.+|.+.
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 34556899999999999999875 999999999999999999999999998754 5677666666666554
No 77
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.87 E-value=0.0002 Score=77.98 Aligned_cols=203 Identities=14% Similarity=0.061 Sum_probs=140.2
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc------HHHHHHHHHHHhc--CCC-----CCchhhccCCchHHHHHHhcCCCCHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN------SHGAATALYLNLS--FLD-----DAKPIIGSSHAVPFLVELCKGKTEHQCK 362 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~------~~~~A~aaL~nLs--~~~-----~~k~~I~~~g~i~~Lv~lL~~~~~~~~~ 362 (565)
.+.....+...++.++++|..+. .+..+..+=.++. ... +++..+-+.-....+..+.... +....
T Consensus 316 klq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~ 394 (678)
T KOG1293|consen 316 KLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFV 394 (678)
T ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHH
Confidence 34555556678888888886432 1111222111121 111 1223333333334444444455 67788
Q ss_pred HHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcC
Q 008437 363 LDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTG 440 (565)
Q Consensus 363 ~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~ 440 (565)
.+|+..+.+++..- .-+.-+-+..++.+|++++.+++..+...++++|.||.. ...-+..+++. |+|..|.+++.+-
T Consensus 395 aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s~~~~~ 473 (678)
T KOG1293|consen 395 AAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILESMLTDP 473 (678)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHHHhcCC
Confidence 88888888876421 112224456789999998888888999999999999998 46678888886 9999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcH-HHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 441 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI-PALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 441 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v-~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
++..+..++++|+++..++.+..+...-..+- ..|+.+..+.+..+++.+-.+||+|.-.
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999998876555444444433 3467899999999999999999998744
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=97.85 E-value=0.00023 Score=78.99 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=112.2
Q ss_pred hHHHHHHhcCCcHHHH--HHHHHHHhcCCCC----CchhhccCCchHHHHHHhcCCC------CHHHHHHHHHHHHHhcc
Q 008437 307 IPLLEKMISNSNSHGA--ATALYLNLSFLDD----AKPIIGSSHAVPFLVELCKGKT------EHQCKLDALHALYNLST 374 (565)
Q Consensus 307 i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~----~k~~I~~~g~i~~Lv~lL~~~~------~~~~~~~Al~aL~nLs~ 374 (565)
+...+.+|++.+..+. +...+..+...++ .+..|.++=+..+|-+||+++. ....+.-|+.+|..+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5556677776643333 3334444444332 2334666656799999999841 34677889999999999
Q ss_pred CCCChHHHHHcCchHHHhhccCCCC-hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 375 IPSNIPNLLSAGIISGLQSLAVPGD-PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 375 ~~~nk~~iv~~G~v~~Lv~Ll~~~~-~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
.++....=--.+-||.|++++...+ ..+...|+.+|..++.+++|+..+++. |+|+.|++++.+ .+...|.|+.+|.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 7764432222358999999655444 489999999999999999999999997 999999999987 7778999999999
Q ss_pred HhhcCCh
Q 008437 454 LLCNGNE 460 (565)
Q Consensus 454 ~Lc~~~~ 460 (565)
+++....
T Consensus 165 ~Lls~~~ 171 (543)
T PF05536_consen 165 NLLSRLG 171 (543)
T ss_pred HHHHhcc
Confidence 9987544
No 79
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.002 Score=74.47 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=109.3
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH---cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS---AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~---~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~ 421 (565)
.++.+-.+|.+. +..-+++|+.||..++.. +...+. ..+++.++..+.++++.++..|+.++..++.+=.--.
T Consensus 349 ~~~~l~~~l~S~-~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 349 LFEALEAMLQST-EWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 344555667788 888999999999888642 222222 2466666667888999999999999999998422111
Q ss_pred HHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHH-HHHHHhCCcHH-HHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 422 EMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKC-CQMVLQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~-~~~v~~~G~v~-~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
.-.-+.-.++.|+..+++ .+++++.+|+.+|.++.....+. ..-.+ .+++. .|..|..++++.+++.|+..|-...
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 112233677889998886 68899999999999987655421 11111 24555 4556888899999999999999888
Q ss_pred hhcccC
Q 008437 499 EQRQRD 504 (565)
Q Consensus 499 ~~r~~~ 504 (565)
..-+..
T Consensus 504 ~AA~~~ 509 (1075)
T KOG2171|consen 504 DAAQEK 509 (1075)
T ss_pred HHHhhh
Confidence 776555
No 80
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0004 Score=77.02 Aligned_cols=212 Identities=17% Similarity=0.117 Sum_probs=164.5
Q ss_pred HHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC----cHHHHHHHHHHHhcCCCC-
Q 008437 261 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS----NSHGAATALYLNLSFLDD- 335 (565)
Q Consensus 261 i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~----~~~~~A~aaL~nLs~~~~- 335 (565)
|+.|+.-+.++ .=.+-++.|+..|..++. ..|..+. +-|+++|+..|... +....+.-+++++..+++
T Consensus 24 I~kLcDRvess---TL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 24 IEKLCDRVESS---TLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HHHHHHHHhhc---cchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 44455444442 335668889999999874 4666654 45688999999764 234568888888877653
Q ss_pred ------Cc----------hh-hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC--ChHHHHH-cCchHHHhhcc
Q 008437 336 ------AK----------PI-IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS--NIPNLLS-AGIISGLQSLA 395 (565)
Q Consensus 336 ------~k----------~~-I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~-~G~v~~Lv~Ll 395 (565)
.+ .+ |-..+.|..|+..+... |..++..|+..|.+|-.+.. .+..+.. --+|..|+.++
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 22 12 22357889999999988 88999999999999876554 4555544 57899999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC----CHHHHHHHHHHHHHhhcCChHHHHHHHhCCc
Q 008437 396 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG----ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 471 (565)
Q Consensus 396 ~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~----s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 471 (565)
.+....++..++-.|..|.........++.-+.+...|..++... ..-+-+.|+..|.+|-+++..+...+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 888888999999999999999988999888778999999999862 3468999999999999998888899999999
Q ss_pred HHHHHHhhh
Q 008437 472 IPALVSISV 480 (565)
Q Consensus 472 v~~Lv~L~~ 480 (565)
||.|..|+.
T Consensus 256 i~rL~klL~ 264 (970)
T KOG0946|consen 256 IPRLLKLLS 264 (970)
T ss_pred HHHHHhhcC
Confidence 999986544
No 81
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.79 E-value=1.8e-05 Score=57.10 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=35.1
Q ss_pred ccccccccc---CCceecCCCcccchHHHHHHHhcCCCCCCCCCC
Q 008437 74 RCPISLQLM---YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQ 115 (565)
Q Consensus 74 ~CpI~~~~m---~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~ 115 (565)
.||||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999888 457789999999999999999 45678999974
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=97.75 E-value=0.0012 Score=73.48 Aligned_cols=235 Identities=15% Similarity=0.171 Sum_probs=152.0
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch---hhHHHHhcCchHHHHHHhcCCc------H---HHHHHHHH
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR---NKELMLAAGVIPLLEKMISNSN------S---HGAATALY 327 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~---nk~~i~~~G~i~~Lv~lL~s~~------~---~~~A~aaL 327 (565)
.++..+.+|+. .+.+-+-.|+..+.++...++. .++.+.++=+...|-++|+++. . ...|+++|
T Consensus 6 ~l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 6 SLEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 35566778877 3444456667777777654442 2445777766899999998732 1 23488888
Q ss_pred HHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHH
Q 008437 328 LNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSL 407 (565)
Q Consensus 328 ~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al 407 (565)
..++..++....-.-.+-||.|++++.+..+......|+.+|..++..++.+..+++.|+|+.|.+++.+ .....+.|+
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 8888866543221113689999999988834489999999999999999999999999999999996554 455679999
Q ss_pred HHHHHHhcCcccHHHHhcCCC----CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHH-HHHHHhC----CcHHHHHHh
Q 008437 408 AVLLNLAASAAGKEEMNSTPG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC-CQMVLQE----GVIPALVSI 478 (565)
Q Consensus 408 ~~L~nLa~~~~~r~~i~~~~g----~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~-~~~v~~~----G~v~~Lv~L 478 (565)
.+|.+++.... ...+-++.. .+..|.+.+.......+=..+..|..+-...+.. ....... .+...|..+
T Consensus 161 ~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 99999988543 222222222 3344444444444455556677776665544210 1111222 233444555
Q ss_pred hhc-CChhHHHHHHHHHHHHHhh
Q 008437 479 SVN-GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 479 ~~~-~s~~~k~~A~~lL~~L~~~ 500 (565)
+.+ -++..|..|..+...|-+.
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 554 4677777777777666654
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.73 E-value=0.0079 Score=63.73 Aligned_cols=272 Identities=15% Similarity=0.123 Sum_probs=188.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~ 299 (565)
.+..++-+. +.+++..+.+.+|.+.. +++.-..+.+.+.--.++.-|.... .+..-+++|+..++.+..- .....
T Consensus 29 ~i~~~lL~~-~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~-~~~~~ 103 (371)
T PF14664_consen 29 RIQCMLLSD-SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEI-KKGPK 103 (371)
T ss_pred HHHHHHCCC-cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHh-cCCcc
Confidence 333355555 68999999999999985 4556667777776666777776532 3455678899888887532 11222
Q ss_pred HHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC
Q 008437 300 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 377 (565)
Q Consensus 300 ~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~ 377 (565)
-+..|++..|+.+....+. +..|.++|..|+..+ -..+...|++..|++.+-++ ..+..+..+.++..+-..+.
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcc
Confidence 2355789999999987654 456888998887653 34566789999999999887 66688889999999999888
Q ss_pred ChHHHHHcCchHHHhh-ccCC------CCh--HHHHHHHHHHHHHhcCcccHHHHhcCC-CCHHHHHHHhhcCCHHHHHH
Q 008437 378 NIPNLLSAGIISGLQS-LAVP------GDP--MWTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGLATVLDTGELIEQEQ 447 (565)
Q Consensus 378 nk~~iv~~G~v~~Lv~-Ll~~------~~~--~~~e~al~~L~nLa~~~~~r~~i~~~~-g~v~~Lv~lL~~~s~~~~e~ 447 (565)
.|..+...--++.++. +.+. ++. .....+..++..+-.+..|--.+...+ .++..|+..|...++.+++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 8887766444555555 3322 122 233455555555556566666555443 68889999998888888888
Q ss_pred HHHHHHHhhcCC-----------------hH-----------------------------------HHHHHHhCCcHHHH
Q 008437 448 AVSCLFLLCNGN-----------------EK-----------------------------------CCQMVLQEGVIPAL 475 (565)
Q Consensus 448 Av~~L~~Lc~~~-----------------~~-----------------------------------~~~~v~~~G~v~~L 475 (565)
.+.+|..+-+-. .. ....+.+.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 888887653210 00 01234577999999
Q ss_pred HHhhhcC-ChhHHHHHHHHHHHHHhh
Q 008437 476 VSISVNG-STRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 476 v~L~~~~-s~~~k~~A~~lL~~L~~~ 500 (565)
+.+..+. ++....||.-+|..+-..
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL~l 365 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELLHL 365 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 9988887 889999999999875433
No 84
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.4e-05 Score=82.45 Aligned_cols=72 Identities=22% Similarity=0.440 Sum_probs=60.0
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHHH
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-----LCLTPNYCVKGLIASWCEM 138 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-----~~l~pn~~l~~~i~~~~~~ 138 (565)
...++.+|.|-||..++.+||+++|||+||+.||++.++. ...||.|+.++.. ....+|+.++.+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456899999999999999999999999999999998874 6779999988764 1234577788888888664
No 85
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.71 E-value=2.3e-05 Score=83.52 Aligned_cols=69 Identities=26% Similarity=0.454 Sum_probs=58.1
Q ss_pred CCCcccccccccccCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP-NYCVKGLIASWCEM 138 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-n~~l~~~i~~~~~~ 138 (565)
+.+++.||+|..++.||+. +.|||.||+.||..|+.. +..||.|.+.+......| ...+++++..|-..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 5678999999999999998 499999999999999998 889999988877666555 45677788777443
No 86
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=3.1e-05 Score=75.55 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=47.3
Q ss_pred CCCCC-CcccccccccccCCceecCCCcccchHHHHH-HHhcCCCCCCCCCCCCCCC
Q 008437 66 MPLPP-EELRCPISLQLMYDPVIIASGQTYERICIEK-WLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 66 ~~~~p-~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~-~~~~~~~~cP~t~~~l~~~ 120 (565)
.+.+| .+|.|+||.+.|.+|+-++|||.||=.||-. |-.+....||.|++...+.
T Consensus 208 ~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 208 LPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred CCcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 45566 6899999999999999999999999999999 8777667799998865443
No 87
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.61 E-value=5.1e-05 Score=53.67 Aligned_cols=40 Identities=38% Similarity=0.375 Sum_probs=37.2
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
++++..++++|+|+.|++++.+.+..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999984
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.58 E-value=0.0061 Score=64.58 Aligned_cols=253 Identities=14% Similarity=0.078 Sum_probs=170.2
Q ss_pred HHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC--
Q 008437 240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-- 317 (565)
Q Consensus 240 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-- 317 (565)
.|-.+.+..++.+..+.-.-..+.+..++-+ ++.+++-.|.++++.+. .+.+.-..+.+.+.--.++..|...
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCC
Confidence 3444445555555555544455566554444 35788899999999986 4677778888888777788888654
Q ss_pred --cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc
Q 008437 318 --NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA 395 (565)
Q Consensus 318 --~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll 395 (565)
..+++|...+..+.........+ ..|.+..||.+..+. +...+..|+.+|+.|+..+ -..++++|++..|++.+
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~-~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN--PELVAECGGIRVLLRAL 156 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHH
Confidence 24667888887765443332222 357889999999987 7889999999999998743 34567899999999944
Q ss_pred CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC-------CH--HHHHHHHHHHHHhhcCChHHHHHH
Q 008437 396 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-------EL--IEQEQAVSCLFLLCNGNEKCCQMV 466 (565)
Q Consensus 396 ~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-------s~--~~~e~Av~~L~~Lc~~~~~~~~~v 466 (565)
-++...+.+.++.++..+-.++..|.-+... --+..|+.-+... +. .--..+..++..+-+...+..-..
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 4465568899999999999999999877653 3355555444322 11 123344444444444443332222
Q ss_pred HhC-CcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437 467 LQE-GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 502 (565)
Q Consensus 467 ~~~-G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~ 502 (565)
... .++..|+..+.-.++++|+....+|--+-+.++
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 232 578889988888888888888777777554433
No 89
>PTZ00429 beta-adaptin; Provisional
Probab=97.55 E-value=0.02 Score=65.87 Aligned_cols=257 Identities=12% Similarity=0.036 Sum_probs=163.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
..+..+++.+.+. +.+.|.-.--.|.++++.+++.- .+ ++..|.+=|.+ .++.++-.|+++|.++-. +
T Consensus 68 ~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pela-lL----aINtl~KDl~d----~Np~IRaLALRtLs~Ir~--~ 135 (746)
T PTZ00429 68 YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKA-LL----AVNTFLQDTTN----SSPVVRALAVRTMMCIRV--S 135 (746)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHH-HH----HHHHHHHHcCC----CCHHHHHHHHHHHHcCCc--H
Confidence 4667778877776 88888777777777776554422 11 14445554444 789999999888887742 2
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
..-.. .++.+.+.|...+. +..|+-++..+-.. ....+...|.++.|.++|.+. ++.+..+|+.+|+.+.
T Consensus 136 ~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~--~pelv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 136 SVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHD--DMQLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CcccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 22222 34556666765543 56666666666432 223455568999999999888 9999999999999998
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
....... -...+.+..|+..+.+.++-.+-..+.+|.... +....... ..+..+...|.+.++.+.-.|+.++.
T Consensus 208 ~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~~---~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 208 DYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESAE---TLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred HhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6544332 223456677777666556666666666665432 22222221 35667777788888999999999998
Q ss_pred HhhcCC-hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 454 LLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 454 ~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
.+.... ......+. ..+.+.|+.|+ ++++.+|--+..-|..+...
T Consensus 282 ~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 282 NLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHH
Confidence 887643 22111111 12335566664 56677877777666666543
No 90
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.55 E-value=4.1e-05 Score=77.07 Aligned_cols=66 Identities=15% Similarity=0.358 Sum_probs=54.4
Q ss_pred CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIASW 135 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~~ 135 (565)
+-....|++|..+|.|+-|+ .|=|||||.||-++|.. ..+||.|+-.+... .+.++.+|+.++...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 34578899999999999976 49999999999999998 78999998666443 467788888877553
No 91
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=5.2e-05 Score=80.44 Aligned_cols=70 Identities=24% Similarity=0.422 Sum_probs=57.2
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCCCCccc----HHHHHHHHHHHHHcCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPHLCLTPN----YCVKGLIASWCEMNGV 141 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~~l~pn----~~l~~~i~~~~~~~~~ 141 (565)
+..||||++-..=|+.+.|||.||=.||.++|.. +...||.|+..+...+|.|- ..-+..++..+..||+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 7899999999999999999999999999998874 35679999988887666554 3345557777888873
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.51 E-value=0.0001 Score=52.16 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=36.8
Q ss_pred CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 248 DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 248 ~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+++++..+++.|+++.|+.+|.+ .+..+++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 35788899999999999999997 78999999999999997
No 93
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.50 E-value=9.4e-05 Score=59.48 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=32.0
Q ss_pred ccccccccCCc-------------eecCCCcccchHHHHHHHhcCCCCCCCCC
Q 008437 75 CPISLQLMYDP-------------VIIASGQTYERICIEKWLSDGHSTCPKTQ 114 (565)
Q Consensus 75 CpI~~~~m~dP-------------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~ 114 (565)
|+||++-|.|| +...|||.|-..||++|+.. +.+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 23479999999999999986 55999985
No 94
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0023 Score=64.36 Aligned_cols=206 Identities=15% Similarity=0.162 Sum_probs=138.3
Q ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhh
Q 008437 262 VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPII 340 (565)
Q Consensus 262 ~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I 340 (565)
..|+.||.+ .++.++..|+..|.+|+.. ..+..... ...++.|..++......+.|+.+|.|++.....+..+
T Consensus 6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHS----LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHhcc----CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHH
Confidence 457888877 6789999999999999743 23333322 2468888899877655677999999999998877777
Q ss_pred ccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--c----CchHHHhh-ccCCCCh--HHHHHHHHHHH
Q 008437 341 GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--A----GIISGLQS-LAVPGDP--MWTEKSLAVLL 411 (565)
Q Consensus 341 ~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~----G~v~~Lv~-Ll~~~~~--~~~e~al~~L~ 411 (565)
.+. .+..|+.++-+. .....+.++.+|.||+..++....+.. . .++..|+. ....+.. .-....+-++.
T Consensus 80 l~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 665 778888888776 445677899999999998875555432 1 34444444 4433211 22366788999
Q ss_pred HHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhC--CcHHHHH
Q 008437 412 NLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQE--GVIPALV 476 (565)
Q Consensus 412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--G~v~~Lv 476 (565)
||+....+|.-+....-++...+.-+.. ++..-+...+++|.|.|.... ....++.+ .+.|.|+
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iL 224 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAIL 224 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHH
Confidence 9999999999887653222222222223 344456778889999888765 34444444 3455543
No 95
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=4.8e-05 Score=84.43 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=49.4
Q ss_pred CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 008437 71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 124 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 124 (565)
.-+.||+|..=.+|-|++-|||-||-.||+.-+...+..||.|+..|...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 347999999999999999999999999999999877899999999998877765
No 96
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0082 Score=68.58 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhccCccchhhhhc----cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHH
Q 008437 235 CNIVEQIRLLLKDDEEARVFTGA----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 310 (565)
Q Consensus 235 ~~Al~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~L 310 (565)
.-++.+|+++.+.+++.-..++. -|..+.+..+|... .++.+|..|+..+..+. .+.+.-.-|++.|++..|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHH
Confidence 35789999999999877666654 46777777777653 56789999998887776 467777888888999999
Q ss_pred HHHhcCC-cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc----------------
Q 008437 311 EKMISNS-NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS---------------- 373 (565)
Q Consensus 311 v~lL~s~-~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs---------------- 373 (565)
..+|.+- +.++.+.-+|+.|+...+.-..-.+.|++..+..++-..++++.+..|+..|..|.
T Consensus 1819 L~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1819 LTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 9998764 55666777777777665443333344544444433322212222222222111111
Q ss_pred --------------------------------------------------------------------------------
Q 008437 374 -------------------------------------------------------------------------------- 373 (565)
Q Consensus 374 -------------------------------------------------------------------------------- 373 (565)
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence
Q ss_pred -------------------------------------------------------c-CCCChHHHHHcCchHHHhhccCC
Q 008437 374 -------------------------------------------------------T-IPSNIPNLLSAGIISGLQSLAVP 397 (565)
Q Consensus 374 -------------------------------------------------------~-~~~nk~~iv~~G~v~~Lv~Ll~~ 397 (565)
. ++.-...+-..|-+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 1 11111111123555555553322
Q ss_pred CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHH
Q 008437 398 GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALV 476 (565)
Q Consensus 398 ~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv 476 (565)
.+..+-..|+.+|..|+.+.-...+|... .++..++..|... +..-..|+.+|-.+-... .+....++..|.||.|+
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen~~C~~AMA~l-~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQFCCDAMAQL-PCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhccHHHHHHhcc-ccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH
Confidence 22333467999999999998888888876 6777788887653 233347888887776544 35667778889999999
Q ss_pred Hhhhc
Q 008437 477 SISVN 481 (565)
Q Consensus 477 ~L~~~ 481 (565)
.|+..
T Consensus 2137 ~LLd~ 2141 (2235)
T KOG1789|consen 2137 QLLDS 2141 (2235)
T ss_pred HHhcc
Confidence 88764
No 97
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.048 Score=57.47 Aligned_cols=241 Identities=14% Similarity=0.109 Sum_probs=170.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----cc----chhhhhccCCHHHHHHHhcccccC--CCHHHHHHHH
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-----EE----ARVFTGANGFVVALLRFLESAVCE--RNSYAQEIGA 284 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-----~~----~r~~i~~~G~i~~Lv~lL~s~~~s--~~~~~q~~A~ 284 (565)
.+++.|+.+|.+. +.++-...+..|..|+..+ .+ ....+++.++++.|++-+..-..+ +......+++
T Consensus 125 n~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 5788999999987 8999999999999998653 11 234567788889998887652111 1223445667
Q ss_pred HHHHHhhccCchhhHHHHhcCchHHHHHHhcCC---c-HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhc----C
Q 008437 285 MALFNLAVNNNRNKELMLAAGVIPLLEKMISNS---N-SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK----G 355 (565)
Q Consensus 285 ~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~---~-~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~----~ 355 (565)
..+-|+..-.+.....+++.|.+..|..-+... + ....|..+|.-+-.+ ++++..++.-.+|..|++-|. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 778888766777788888888777766644332 1 234466677665444 568888888888888887663 1
Q ss_pred C----CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc---cHHHHhcCCC
Q 008437 356 K----TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA---GKEEMNSTPG 428 (565)
Q Consensus 356 ~----~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~---~r~~i~~~~g 428 (565)
+ ...+..++-..+|+.+-..++|+.+++...+++...-+++. ....+..++.+|-....+++ +...+++. +
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~-l 361 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI-L 361 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH-H
Confidence 1 13467888899999999999999999998888766655554 34456779999999888776 45566765 6
Q ss_pred CHHHHHHHhh---------c-CCHHHHHHHHHHHHHhhcCC
Q 008437 429 LVSGLATVLD---------T-GELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 429 ~v~~Lv~lL~---------~-~s~~~~e~Av~~L~~Lc~~~ 459 (565)
|+..+..+.. . .-....|+.+.+|+.+-++.
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 7777666643 1 23456788888888876643
No 98
>PTZ00429 beta-adaptin; Provisional
Probab=97.35 E-value=0.039 Score=63.52 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=154.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
+..+-..|.+. +...+.+|++.|-.+...+.+. .-+.+.+++++.+ .|.+.+......|.+++..+++.
T Consensus 34 ~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 34 GAELQNDLNGT-DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHH
Confidence 34566777776 7777788887665554333222 2245566777766 68888888888888887533322
Q ss_pred hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 298 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
-.. ++..|.+=|.+++. +..|+.+|.++-.. ..+ .-.++++.+.|.+. ++-+++.|+.++..|-..
T Consensus 103 alL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~----~i~--e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 103 ALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS----SVL--EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH----HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Confidence 111 24556666665554 34455555443211 111 12456677778777 899999999999999654
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
.. ..+.+.|.++.|.+++.+.++.++..|+.+|..+......+-.+. + ..+..|+..|..-+++.|-..+.+|...
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~-~-~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS-N-EWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH-H-HHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 33 234567888999999999999999999999999986543332222 2 4566777777777888888777776442
Q ss_pred hcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 456 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 456 c~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
.-.+.... ..++..+...+.+.++.+.-.|.+++-.+.
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 21111111 133444444444555656555555555443
No 99
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0036 Score=72.47 Aligned_cols=228 Identities=13% Similarity=0.123 Sum_probs=138.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
.+-.+|.+. +|..|..|+.+|..++.+..+.-. .. ..+++.++..|.+ +++.+|-.|+.++..++.+-..--
T Consensus 352 ~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~--~~l~~Il~~Vl~~l~D----phprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 352 ALEAMLQST-EWKERHAALLALSVIAEGCSDVMI--GNLPKILPIVLNGLND----PHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHH--HHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHhhhhhhcHHH
Confidence 344566776 999999999999999865543221 12 4455555566655 789999999999999985322222
Q ss_pred HHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q 008437 299 ELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELC-KGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 299 ~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nL 372 (565)
..-.+.-+++.|+..+++... ..+|++++.|++..-. +..|.- .+.+..++.+| .++ .+.+++.++.+|...
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASV 502 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHH
Confidence 333344578899999987632 3558888888875422 333332 35555444444 455 899999999999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCC-ChH---HHHHHHHHHHHHhcCcccHHHHhcCC-CCHHHHHHH---hhcCCHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPG-DPM---WTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGLATV---LDTGELIE 444 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~---~~e~al~~L~nLa~~~~~r~~i~~~~-g~v~~Lv~l---L~~~s~~~ 444 (565)
+...+.+-.=.-.-.+|.|..++... +.. ++-+.+..+..++. .-|++.+.... .++..+..+ ....+...
T Consensus 503 A~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~dd~~ 581 (1075)
T KOG2171|consen 503 ADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDDDDPL 581 (1075)
T ss_pred HHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhhcccc
Confidence 86444332222234677777755443 233 33333334333332 45666665431 233333333 12234556
Q ss_pred HHHHHHHHHHhhc
Q 008437 445 QEQAVSCLFLLCN 457 (565)
Q Consensus 445 ~e~Av~~L~~Lc~ 457 (565)
++.-+..-.++|+
T Consensus 582 ~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 582 RSYMIAFWARMCR 594 (1075)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777776
No 100
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.32 E-value=0.02 Score=62.38 Aligned_cols=263 Identities=16% Similarity=0.145 Sum_probs=168.0
Q ss_pred HHHHHHHHhccCccchhhhhccCCHHHHHHHhc------ccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHH
Q 008437 237 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLE------SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 310 (565)
Q Consensus 237 Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~L 310 (565)
|+.+||.+.+ +..+...+....++..|+++-. ......+..+...|+.+|.|+-..++..|..+++.|..+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3567777774 4456666666666777776651 11233578899999999999988888889999999999999
Q ss_pred HHHhcCC-----cH--HHHHHHHHHHhcCC-CCCchhhcc-CCchHHHHHHhcC--------C--------CCHHHHHHH
Q 008437 311 EKMISNS-----NS--HGAATALYLNLSFL-DDAKPIIGS-SHAVPFLVELCKG--------K--------TEHQCKLDA 365 (565)
Q Consensus 311 v~lL~s~-----~~--~~~A~aaL~nLs~~-~~~k~~I~~-~g~i~~Lv~lL~~--------~--------~~~~~~~~A 365 (565)
+..|+.. .. .-....+|+.++.. .+.+..+.+ .+++..|+..|.. . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999865 11 23377788877654 455555544 5777777776531 0 144567889
Q ss_pred HHHHHHhccCCCChHHHHHcCchHHHhhccC---------CCChHHHHHHHHHHHHHhcCc-cc-------HHHH---hc
Q 008437 366 LHALYNLSTIPSNIPNLLSAGIISGLQSLAV---------PGDPMWTEKSLAVLLNLAASA-AG-------KEEM---NS 425 (565)
Q Consensus 366 l~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~---------~~~~~~~e~al~~L~nLa~~~-~~-------r~~i---~~ 425 (565)
+++|+|+.........--..+.++.|+.++. .........++.+|.|+-... .. ...+ ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 9999999765443322223445555555321 123345567778888773211 00 0000 12
Q ss_pred CCCCHHHHHHHhhc----CC----HHHHHHHHHHHHHhhcCChHHHHHHHhC----------------CcHHHHHHhhhc
Q 008437 426 TPGLVSGLATVLDT----GE----LIEQEQAVSCLFLLCNGNEKCCQMVLQE----------------GVIPALVSISVN 481 (565)
Q Consensus 426 ~~g~v~~Lv~lL~~----~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~----------------G~v~~Lv~L~~~ 481 (565)
....+..|+.+|+. .. ...-..-+.+|..+|..+...++.+... .+-..|+.|+.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 22467778888764 11 1334455667777887766555555431 344568889888
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 008437 482 GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 482 ~s~~~k~~A~~lL~~L~~~ 500 (565)
..+.+|+.++.+|..|.+.
T Consensus 320 ~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CCchHHHHHHHHHHHHHhh
Confidence 8899999999999988753
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.30 E-value=0.03 Score=60.07 Aligned_cols=221 Identities=16% Similarity=0.056 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..++..|....+.++...++..+... ++ ..++..|+..|.+ .+..++..++.+|..+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~d----~~~~vr~aaa~ALg~i~----- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQA----GPEGLCAGIQAALGWLG----- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhcC----CCHHHHHHHHHHHhcCC-----
Confidence 4455666664433555554444333211 11 1126677777765 45556666666665431
Q ss_pred hhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 297 NKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
..+..+.|+.+|.+.+.... ++.++.. ......+.|+.+|++. ++.++..|+.+|..|-.
T Consensus 115 ------~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 115 ------GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHE-DALVRAAALRALGELPR 176 (410)
T ss_pred ------chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc
Confidence 12345666666765543222 2222211 1123456677777666 67777777777766532
Q ss_pred CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh---cC------------------CCCHHHH
Q 008437 375 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN---ST------------------PGLVSGL 433 (565)
Q Consensus 375 ~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~---~~------------------~g~v~~L 433 (565)
..+++.|...+.+.++.++..|+..|..+-. ++....+. .. +..+..|
T Consensus 177 ----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L 245 (410)
T TIGR02270 177 ----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL 245 (410)
T ss_pred ----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence 2345555555666666666666666655432 22111111 00 1223333
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 434 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 434 v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
..++.. +.+++.++.+|..+ ....+++.|+.++.+. ..++.|...++.+.+.+
T Consensus 246 ~~ll~d--~~vr~~a~~AlG~l-----------g~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 246 RELLQA--AATRREALRAVGLV-----------GDVEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred HHHhcC--hhhHHHHHHHHHHc-----------CCcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 333332 12444444444322 2235677777766544 49999999999998854
No 102
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.028 Score=59.16 Aligned_cols=235 Identities=16% Similarity=0.089 Sum_probs=162.4
Q ss_pred HHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC-----ch----hhHHHHhcCch
Q 008437 237 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN-----NR----NKELMLAAGVI 307 (565)
Q Consensus 237 Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~-----~~----nk~~i~~~G~i 307 (565)
.++.+..+| .-++.--.+++.++++.|+.+|.+ ++..+-...+..|..|+-.+ .+ --..+++.+++
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 566777777 567777788999999999999998 67777777788888876211 11 13345667889
Q ss_pred HHHHHHhcCCc--------HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhc-CCCCHHHHHHHHHHHHHhccCCC
Q 008437 308 PLLEKMISNSN--------SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPS 377 (565)
Q Consensus 308 ~~Lv~lL~s~~--------~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~-~~~~~~~~~~Al~aL~nLs~~~~ 377 (565)
++|+.-+..-+ ...++.+++.|+... ++....+++.|.+.-|+.-+. ...-..-+..|..+|.-+-.+.+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 99988875421 134477788887655 556667777777776666333 22123356777888877776554
Q ss_pred -ChHHHHHcCchHHHhh-cc--CCC------ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437 378 -NIPNLLSAGIISGLQS-LA--VPG------DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 447 (565)
Q Consensus 378 -nk~~iv~~G~v~~Lv~-Ll--~~~------~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~ 447 (565)
|+..+-...+|..|++ +. +.. .....++.-..|+.+...+++|+.++.. .++... .++.......+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm-~Lmlr~Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLM-NLMLREKKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHH-HHHHHHHHHhhhh
Confidence 8888888999999999 53 211 3445566777777777889999999985 566554 4443446667888
Q ss_pred HHHHHHHhhcCCh--HHHHHHHhCCcHHHHHHh
Q 008437 448 AVSCLFLLCNGNE--KCCQMVLQEGVIPALVSI 478 (565)
Q Consensus 448 Av~~L~~Lc~~~~--~~~~~v~~~G~v~~Lv~L 478 (565)
|+.+|-.+..+++ .++...++.++...+..+
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 9999988777665 567777777666666543
No 103
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.002 Score=68.97 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=139.7
Q ss_pred HHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHH--HHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHH
Q 008437 284 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG--AATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQ 360 (565)
Q Consensus 284 ~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~--~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~ 360 (565)
+..|..++.+-.--|--+..+.+.++|+.+|+.++... .+...+.|+..- ...+.-+...|.|..|+.++.+. +..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-Dda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhh
Confidence 44455555432333555667788999999999987653 377778887654 45566667789999999999988 778
Q ss_pred HHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc----cHHHHh---cCCCCHH
Q 008437 361 CKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA----GKEEMN---STPGLVS 431 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~----~r~~i~---~~~g~v~ 431 (565)
.+.+..|+|++|-.+.. .+-..+..-++..++.+..+++-.+++.++.+|.|+.-+.. .+.-.. ...-...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 99999999999986543 35567777889999999999999999999999999876321 111111 1101334
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCcHHHHHHhh
Q 008437 432 GLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALVSIS 479 (565)
Q Consensus 432 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~ 479 (565)
.|++.++..+|...+..+-+|.+++..+++.+..+.+ +..+..+..++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 5666677778888888899999998877766666664 44444444443
No 104
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.19 E-value=0.0042 Score=65.44 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=127.9
Q ss_pred hHHHHhcCchHHHHHHhcCCcH----HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 298 KELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~~~----~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
...|...|++..|++++.+++. +..|+.+|..+ ...+|+..+...| +..++.+-+....++.....+.+|-++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHH-HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3456667999999999998853 34466666554 3346677776544 3444444443335778888999999998
Q ss_pred cCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc--CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 374 TIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA--SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 374 ~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~--~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
.+. +.+..++++|++..++--.+..++.+...|+-+|.|++. +.+++..|++. .....|.-+-...++..+-+|+-
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHHHHHHHHHH
Confidence 654 689999999999999987777889999999999999887 55788888886 67777777777778889999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcH
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVI 472 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v 472 (565)
+...|+.+.+ .-..+...|.+
T Consensus 330 AV~vlat~KE-~E~~VrkS~Tl 350 (832)
T KOG3678|consen 330 AVAVLATNKE-VEREVRKSGTL 350 (832)
T ss_pred HHhhhhhhhh-hhHHHhhccch
Confidence 9988888765 45556666543
No 105
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.15 E-value=0.028 Score=58.98 Aligned_cols=171 Identities=16% Similarity=0.103 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccccc-CCCHHHHHHHHHHHHHhhccCch
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-ERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~-s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
...++.+|... +.-....+...|..++..+.. -.+.+......++|..... +.+......|+.+|.-+.. -++
T Consensus 116 ~~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~----~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~e 189 (442)
T KOG2759|consen 116 WLSFLNLLNRQ-DTFIVEMSFRILSKLACFGNC----KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDE 189 (442)
T ss_pred hHHHHHHHhcC-ChHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccc
Confidence 46677888776 777777788888888755431 2222223333333322111 1344555667788888875 578
Q ss_pred hhHHHHhcCchHHHHHHhcCC--cH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 297 NKELMLAAGVIPLLEKMISNS--NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~--~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
.|-.++.++++..|+..|.++ .. +-...-+++.|+..+...+.+...+.|+.|++++++.....+.+-.+.++.||
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999533 22 34477778888888777777766799999999999876778889999999999
Q ss_pred ccCCC-------ChHHHHHcCchHHHhhc
Q 008437 373 STIPS-------NIPNLLSAGIISGLQSL 394 (565)
Q Consensus 373 s~~~~-------nk~~iv~~G~v~~Lv~L 394 (565)
....+ ....++..++.+.+-.|
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 87552 33445555555443334
No 106
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.15 E-value=0.028 Score=61.18 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccC-CCHHHHHHHHHHHHHhhccCchhhHHHHh-cCc
Q 008437 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLA-AGV 306 (565)
Q Consensus 229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s-~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~ 306 (565)
.++++..+|++.|.++.-.++..|..+.+.|..+.|+..|+...+. .+.++.--..++|+-++......+..+++ .++
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 4789999999999999999999999999999999999999875322 25566666777777666555666666665 478
Q ss_pred hHHHHHHhcCC--------c--------HH---HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC--------CCH
Q 008437 307 IPLLEKMISNS--------N--------SH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--------TEH 359 (565)
Q Consensus 307 i~~Lv~lL~s~--------~--------~~---~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--------~~~ 359 (565)
+..|+..|... . .. ..+..+++|+..+......-...+.++.|+.+|..- ...
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 88888877420 0 11 226778899877643322211245566666654311 133
Q ss_pred HHHHHHHHHHHHhccCC-CC-------hHH----HHHcCchHHHhhccCC-----CC---hHHHHHHHHHHHHHhcCc-c
Q 008437 360 QCKLDALHALYNLSTIP-SN-------IPN----LLSAGIISGLQSLAVP-----GD---PMWTEKSLAVLLNLAASA-A 418 (565)
Q Consensus 360 ~~~~~Al~aL~nLs~~~-~n-------k~~----iv~~G~v~~Lv~Ll~~-----~~---~~~~e~al~~L~nLa~~~-~ 418 (565)
....+++.+|.|+-... +. ... -....++..|+.+|+. .. .....-.+.+|.+++... .
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 56788888888883110 00 100 1123456666665532 11 133445677777777753 3
Q ss_pred cHHHHh---------------cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCC
Q 008437 419 GKEEMN---------------STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 470 (565)
Q Consensus 419 ~r~~i~---------------~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 470 (565)
.|..+. .....-..|++++.+..+..+..+...|+.||..+. .+.+..-|
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~--~~~v~~~G 348 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA--SRFVKYVG 348 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH--HHHHHHcC
Confidence 333332 123566779999988779999999999999998775 34444444
No 107
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.10 E-value=0.0036 Score=61.57 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHHhccC--ccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008437 229 ENLGQKCNIVEQIRLLLKDD--EEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 304 (565)
Q Consensus 229 ~~~~~q~~Al~~L~~La~~~--~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~ 304 (565)
.+|+.|.+|+..|+.+...+ ......+.+ ...+..+...+.+ ....+...|+.+|..|+..- .....-.-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l-~~~~~~~~~ 93 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQL-GSHFEPYAD 93 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHH-GGGGHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHH-hHhHHHHHH
Confidence 49999999999999999877 233333322 2445566666654 34567888899888887532 122111123
Q ss_pred CchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCc-hHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC-ChH
Q 008437 305 GVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHA-VPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIP 380 (565)
Q Consensus 305 G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~-i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~-nk~ 380 (565)
..+|.|+..+.++.. ++.|..+|..+...-.. .... ++.+...+.+. ++.++..++..|..+...-. +..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-----~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-----SPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-----HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHh
Confidence 468888888877643 45677777777543220 1223 46666677777 89999999999998875433 222
Q ss_pred HHHH----cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437 381 NLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 381 ~iv~----~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~ 421 (565)
.+-. ..+++.+..++.++++.+++.|-.++..+...-..+.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 2211 3366677778889999999999999999876544333
No 108
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.026 Score=61.01 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=148.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhh-hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFT-GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.+.-|+.+|+.. +.++|.-+-..|..+..+-. +.-.. --...++.|+.-+.+ .++.+|..|+.-|..+-.- .
T Consensus 209 ~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~-s~P~s~d~~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~i-~ 281 (675)
T KOG0212|consen 209 LLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIR-SSPSSMDYDDMINVLVPHLQS----SEPEIQLKALTWIQEFVKI-P 281 (675)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHh-cCccccCcccchhhccccccC----CcHHHHHHHHHHHHHHhcC-C
Confidence 445677888876 77777544444444332210 11111 124456777776665 7899999998877776432 2
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHH---HHHHH---HHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSH---GAATA---LYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~---~~A~a---aL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
.+-....-.|++..+...+...+.. +.|.. .|..+...+..+..|.-...|+.|.+.|.++ ..+++..++.-|
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi 360 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWI 360 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHH
Confidence 2223333457777777777665432 22221 2333333333333332234678888889888 889999999999
Q ss_pred HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437 370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449 (565)
Q Consensus 370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av 449 (565)
..|-....+........+.+.|+.-+.+.+..+...++.+|+++|.++..+.- -.++..|+++......-....+.
T Consensus 361 ~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~----~~fl~sLL~~f~e~~~~l~~Rg~ 436 (675)
T KOG0212|consen 361 ILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL----RKFLLSLLEMFKEDTKLLEVRGN 436 (675)
T ss_pred HHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH----HHHHHHHHHHHhhhhHHHHhhhh
Confidence 99988888887777788999999967777888999999999999998876522 13455566666555556677777
Q ss_pred HHHHHhhc
Q 008437 450 SCLFLLCN 457 (565)
Q Consensus 450 ~~L~~Lc~ 457 (565)
-|+..||.
T Consensus 437 lIIRqlC~ 444 (675)
T KOG0212|consen 437 LIIRQLCL 444 (675)
T ss_pred HHHHHHHH
Confidence 77888875
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.83 E-value=0.0019 Score=53.16 Aligned_cols=86 Identities=24% Similarity=0.340 Sum_probs=68.8
Q ss_pred hHHHHHHh-cCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437 346 VPFLVELC-KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 424 (565)
Q Consensus 346 i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~ 424 (565)
|+.|++.| .++ ++.++..|+.+|..+- ...+++.|++++.+.++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 68999999 555 8999999999998442 2246899999888999999999999999872
Q ss_pred cCCCCHHHHHHHhhcC-CHHHHHHHHHHHH
Q 008437 425 STPGLVSGLATVLDTG-ELIEQEQAVSCLF 453 (565)
Q Consensus 425 ~~~g~v~~Lv~lL~~~-s~~~~e~Av~~L~ 453 (565)
. +.+++.|.+++.+. +..+++.|+.+|.
T Consensus 60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1 35889999998874 5566898988873
No 110
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.83 E-value=0.0015 Score=45.49 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.0
Q ss_pred CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
+++..+.+.|+++.|+++|.++ +.++++.|+++|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 4677888899999999999988 89999999999999973
No 111
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.76 E-value=0.0023 Score=44.61 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=36.1
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
++++..+++.|+++.|++++.+++..+++.++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999988899999999999999973
No 112
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.0096 Score=63.87 Aligned_cols=258 Identities=15% Similarity=0.106 Sum_probs=169.1
Q ss_pred HHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhc
Q 008437 236 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMIS 315 (565)
Q Consensus 236 ~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~ 315 (565)
.++..|..+++.-.-.|.-+....+++.|+++|+. ++..+.--+...+.|+...-..-+..+.+.|.|..|+.++.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 45566666666555577778889999999999987 44444555666788876554556888899999999999998
Q ss_pred CCcH--HHHHHHHHHHhcCCCCC--chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-C---ChHHHHHcC-
Q 008437 316 NSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-S---NIPNLLSAG- 386 (565)
Q Consensus 316 s~~~--~~~A~aaL~nLs~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~---nk~~iv~~G- 386 (565)
+.+. +.+..|+|.++..+.+. |-...+.-++..++.+..++ +-.++...+.+|.|+..+. . .+...+.+.
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p 562 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP 562 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence 7543 56689999999877543 33444556789999999888 8889999999999997522 2 233333322
Q ss_pred ---chHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh-cCCCCHHHHHHHhhc---------CC------------
Q 008437 387 ---IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN-STPGLVSGLATVLDT---------GE------------ 441 (565)
Q Consensus 387 ---~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~-~~~g~v~~Lv~lL~~---------~s------------ 441 (565)
....|++.+...++...+..+-+|.+++.+.++...++ +....+..+-++|.. ++
T Consensus 563 ~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~ 642 (743)
T COG5369 563 RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT 642 (743)
T ss_pred HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence 22334444455566666677888888887776655443 222333333333311 00
Q ss_pred --------------------------------HHHHHHHHHHHHHhhc---------CChHHHHHHHhCCcHHHHHHhhh
Q 008437 442 --------------------------------LIEQEQAVSCLFLLCN---------GNEKCCQMVLQEGVIPALVSISV 480 (565)
Q Consensus 442 --------------------------------~~~~e~Av~~L~~Lc~---------~~~~~~~~v~~~G~v~~Lv~L~~ 480 (565)
.+..-..+++..++.- ...+.++.+.+.|.-..|+.++.
T Consensus 643 ~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~ 722 (743)
T COG5369 643 IVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQA 722 (743)
T ss_pred eecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhc
Confidence 0111112222222221 11244556666788888899999
Q ss_pred cCChhHHHHHHHHHHHHH
Q 008437 481 NGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 481 ~~s~~~k~~A~~lL~~L~ 498 (565)
..++.+++++..+|.+|+
T Consensus 723 ~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 723 KDSLIVREKIGTALENLR 740 (743)
T ss_pred cCcHHHHHHHHHHHHhhh
Confidence 999999999999999876
No 113
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.041 Score=60.62 Aligned_cols=275 Identities=15% Similarity=0.122 Sum_probs=173.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhh--hhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNL 290 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~--i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nL 290 (565)
-+.++.|..+|.+. +...+..|..+|.+++.++.+.-.. .-. .-.+|.+++|.++ .++.++..|+.++-.+
T Consensus 127 pelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 127 PELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQF 201 (885)
T ss_pred hhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC----CChhHHHHHHhhhhhe
Confidence 47888999999887 7778889999999999776543222 111 3357888899888 6889999998877665
Q ss_pred hccCchhhHHHHhcC-chHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437 291 AVNNNRNKELMLAAG-VIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 367 (565)
Q Consensus 291 a~~~~~nk~~i~~~G-~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~ 367 (565)
-. ..+...+..-+ .++.|..+-... +.+.+.+.++..|....-.|..---.++|+.+++.-++. +..+.-.|+.
T Consensus 202 i~--~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACE 278 (885)
T KOG2023|consen 202 II--IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACE 278 (885)
T ss_pred ee--cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHH
Confidence 43 23444444432 344444444332 346676666665543322221111246778888887777 7888899999
Q ss_pred HHHHhccCCCChHHHHH--cCchHHHhh-ccCCC-C--------------------------------------------
Q 008437 368 ALYNLSTIPSNIPNLLS--AGIISGLQS-LAVPG-D-------------------------------------------- 399 (565)
Q Consensus 368 aL~nLs~~~~nk~~iv~--~G~v~~Lv~-Ll~~~-~-------------------------------------------- 399 (565)
....++..+--+..+.. ...||.|+. +..++ +
T Consensus 279 Fwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 279 FWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 99999988744444443 467777776 43211 0
Q ss_pred ----------hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q 008437 400 ----------PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 469 (565)
Q Consensus 400 ----------~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 469 (565)
-.+++.++++|..|+.. -+..++.+ ..|.|-+.|.+..=.++|.++-+|..++.+. .+-+...
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~ 431 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPH 431 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccc
Confidence 12344455555554431 12233322 3444444454555568999999999988643 2223322
Q ss_pred --CcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437 470 --GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 504 (565)
Q Consensus 470 --G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~ 504 (565)
-.||.|+.++.+..+-+|....+.|.....+--.+
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence 36788888998888889988888888877664444
No 114
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.68 Score=53.77 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcc-CCCChHHHHH----cCchHHHhhc-cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHH
Q 008437 361 CKLDALHALYNLST-IPSNIPNLLS----AGIISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 434 (565)
Q Consensus 361 ~~~~Al~aL~nLs~-~~~nk~~iv~----~G~v~~Lv~L-l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv 434 (565)
-.+-++.||.||.. +++-...+-. -|-.+.++.+ -..+++.++..|+.++..+....+....|+.. +++..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHHH
Confidence 45678899999875 4433222221 2666666663 34578889999999999999999999999986 7888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHH-hhhcCChhHHHHHHHHHHHHHhhc
Q 008437 435 TVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 435 ~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~-L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
.+|. +-|..++.++.+|+.|++... .....++.|++--|.+ +..+.++..|..|+.+|..|..++
T Consensus 1820 ~lLH-S~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHh-cChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 8885 578899999999999999876 4555566666666654 566677888899999998887543
No 115
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0011 Score=65.89 Aligned_cols=65 Identities=20% Similarity=0.363 Sum_probs=49.7
Q ss_pred CCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437 65 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIA 133 (565)
Q Consensus 65 ~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~ 133 (565)
+...+| |-|-||++.|.+||++.|||+||-.|-.+.+.. ...|++|++.. +....+...|..+..
T Consensus 236 D~~~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t-~g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 236 DIELLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT-HGSFNVAKELLVSLK 300 (313)
T ss_pred CcccCC--ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc-ccccchHHHHHHHHH
Confidence 334444 889999999999999999999999998888876 46799998865 334445555555443
No 116
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0031 Score=62.02 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCceecC-CCcccchHHHHHHHh-cCCCCCCCCCCCCC
Q 008437 69 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLS-DGHSTCPKTQQKLP 118 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~-~~~~~cP~t~~~l~ 118 (565)
-.....||+|++--..|.++. |||.||.-||..-+. ....+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346788999999999999875 999999999998664 34689999998754
No 117
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.56 E-value=0.0018 Score=65.41 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCcccccccccccCC--c-e-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc----cHHHHHHHHHH
Q 008437 70 PEELRCPISLQLMYD--P-V-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP----NYCVKGLIASW 135 (565)
Q Consensus 70 p~~f~CpI~~~~m~d--P-V-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p----n~~l~~~i~~~ 135 (565)
...|.||||+..|.. + | +.+|||.|...+|++-- ....||+|++++...+++| +..+..+.+.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 567999999999954 2 2 34899999999999883 3557999999999877653 22444444444
No 118
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0011 Score=66.01 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=43.1
Q ss_pred cccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437 74 RCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 121 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 121 (565)
.|+||..-|--||.++|+|.||..||.--...+..+||+|+.++++..
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999877666788999999987643
No 119
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.002 Score=66.40 Aligned_cols=46 Identities=22% Similarity=0.588 Sum_probs=39.7
Q ss_pred ccccccccccCC--ce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYD--PV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~m~d--PV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
+.|-||++-+.+ -| +++|+|.|-..||..|+.+....||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 899999988764 44 78999999999999999987677999998654
No 120
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.51 E-value=0.089 Score=51.62 Aligned_cols=178 Identities=13% Similarity=0.097 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc----CCCCHHHHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhh
Q 008437 320 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQS 393 (565)
Q Consensus 320 ~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~----~~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~ 393 (565)
.-+|.++|.-++++++.|..+.....--.|-.+|. +...+-.+-.++++|..|..+++ ....+...++||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 45688888889999999988887665444445544 33355678899999999987654 6667788999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCC-------CCHHHHHHH-hhcCCHHHHHHHHHHHHHhhcCChHHHHH
Q 008437 394 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTP-------GLVSGLATV-LDTGELIEQEQAVSCLFLLCNGNEKCCQM 465 (565)
Q Consensus 394 Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~-------g~v~~Lv~l-L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~ 465 (565)
+++.|+...+..|+-+|..+-.++.|-.-|..+. ..+..++.- ....+++.-.+++++..+||.+.. .+..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr-ar~a 254 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR-ARAA 254 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH-HHHH
Confidence 9999999888999999998888777666543321 123333333 334799999999999999998775 3433
Q ss_pred HHhC---CcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 466 VLQE---GVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 466 v~~~---G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
+..- +.-..=..+....+..+|..-+.+|.++.
T Consensus 255 L~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 255 LRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 3321 22222233444566677777777777664
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.50 E-value=0.0024 Score=52.24 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=35.3
Q ss_pred ccccccccccCC-ceec-CCCcccchHHHHHHHhc--CCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYD-PVII-ASGQTYERICIEKWLSD--GHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~m~d-PV~~-~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~ 118 (565)
-.||.|...=.| |++. .|||.|-..||.+|+.. .+.+||.|+++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 346666655445 6655 69999999999999985 4678999998754
No 122
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.49 E-value=0.016 Score=56.86 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=95.5
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
..+..++..+.+. ...+.+.|+.+|..|+..-...-.-.-...+|.|++.+.+....+.+.|..+|..++..-..-..+
T Consensus 53 ~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~ 131 (228)
T PF12348_consen 53 QLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI 131 (228)
T ss_dssp ---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH
T ss_pred HhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 3456666666665 566888899999998865444433333458889999887788889999999999998854311111
Q ss_pred hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHH----hCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVL----QEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~----~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
+ +..+...+.+.++.++..++..|..+..........+. -..+++.|..++.+.++.+|+.|..++..|..
T Consensus 132 ~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 132 L-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp H-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 34455566778999999999999887764431111111 13467778889999999999999999999865
Q ss_pred hc
Q 008437 500 QR 501 (565)
Q Consensus 500 ~r 501 (565)
.-
T Consensus 207 ~~ 208 (228)
T PF12348_consen 207 HF 208 (228)
T ss_dssp HH
T ss_pred HC
Confidence 53
No 123
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.49 E-value=0.048 Score=50.39 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=95.4
Q ss_pred hccCCchHHHHHHhcCCCC-----HHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHH
Q 008437 340 IGSSHAVPFLVELCKGKTE-----HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLN 412 (565)
Q Consensus 340 I~~~g~i~~Lv~lL~~~~~-----~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~n 412 (565)
+...+|+..|+++++++.. ......++.++..|-.+.-.-...++.-.|..++..+.. .+..+...|+++|.+
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 3456888999999988832 366777888888887665555566666677777775433 368899999999999
Q ss_pred HhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437 413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 413 La~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
++.+.......+...=-++.|+..|...++..+.+|++.+-.|....+
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 999888877777666789999999999999999999999988876544
No 124
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.11 Score=52.85 Aligned_cols=248 Identities=16% Similarity=0.106 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHH
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL 309 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~ 309 (565)
+.-.|.+.+..|-.+.+-+++.-...-..|.+..|..-|... .|.-+..+.+.....|+. .+..++.+.+.|.|..
T Consensus 184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteLae-teHgreflaQeglIdl 259 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTELAE-TEHGREFLAQEGLIDL 259 (524)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHH
Confidence 444566666767777666666666667789888887777642 566666777777777774 4567888889999999
Q ss_pred HHHHhcCCcH----HHHHHH----HHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCh
Q 008437 310 LEKMISNSNS----HGAATA----LYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI 379 (565)
Q Consensus 310 Lv~lL~s~~~----~~~A~a----aL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk 379 (565)
+.+++...++ .-.++. .+.+++.-+-.-+++.+ .-+|+..++++... |+...+.|..+|.-|-++-+.+
T Consensus 260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGA 338 (524)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchh
Confidence 9999975422 111222 22222222222233333 13566677778777 8999999999999999999988
Q ss_pred HHHHHcCc--hHHHhh-ccCCCChHHHHHHHHHHHHHhcCc--------ccHH------HHhcCC------CCHHHHHHH
Q 008437 380 PNLLSAGI--ISGLQS-LAVPGDPMWTEKSLAVLLNLAASA--------AGKE------EMNSTP------GLVSGLATV 436 (565)
Q Consensus 380 ~~iv~~G~--v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~--------~~r~------~i~~~~------g~v~~Lv~l 436 (565)
..+...|- ...|+. ........-++.++.+|.+++.-- +|+. .+.+.. .-......+
T Consensus 339 dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgi 418 (524)
T KOG4413|consen 339 DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGI 418 (524)
T ss_pred HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence 88888763 455555 554443444677888888888621 2222 111110 112334445
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC
Q 008437 437 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG 482 (565)
Q Consensus 437 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~ 482 (565)
+....++..-.+..++..|+........++..+|.|...++-...-
T Consensus 419 lqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEh 464 (524)
T KOG4413|consen 419 LQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEH 464 (524)
T ss_pred HcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhh
Confidence 5556889999999999999998876666666788887777655543
No 125
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.46 E-value=0.0091 Score=51.03 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 008437 234 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 303 (565)
Q Consensus 234 q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~ 303 (565)
|...++.|.+++..+..+...+.+.|+|+.+++...- +..++-+++.|+.+|+||+..+++|...|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i--D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI--DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC--CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4566888999999999999999999999999987643 4578999999999999999999999888875
No 126
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0012 Score=73.61 Aligned_cols=46 Identities=24% Similarity=0.649 Sum_probs=41.1
Q ss_pred CcccccccccccCC-----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYD-----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 71 ~~f~CpI~~~~m~d-----PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
.+-.|+||.+.|.. |-.++|||.|...|+.+||+. ..+||.|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 36789999999999 678999999999999999997 78999998743
No 127
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.30 E-value=0.0017 Score=68.76 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=43.3
Q ss_pred CcccccccccccCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPHL 120 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~ 120 (565)
.+..|-+|.+.-.||+...|.|+|||.||.++... .+-+||.|..+|+.+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 56889999999999999999999999999888642 357899998888754
No 128
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.27 Score=54.02 Aligned_cols=218 Identities=19% Similarity=0.093 Sum_probs=136.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..++..|... ...+|......|..+..... .....-+.+.+.+++.. .+..-+..|+..+..+.. .-
T Consensus 97 ~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~----~~~~~~~~aa~~~ag~v~--g~ 165 (569)
T KOG1242|consen 97 IIEILLEELDTP-SKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTS----TKIAERAGAAYGLAGLVN--GL 165 (569)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhcc----ccHHHHhhhhHHHHHHHc--Cc
Confidence 456677777776 77888877777777653221 11123346677777775 566677888888888753 33
Q ss_pred hhHHHHhcCchHHHHHHhcCCcH---HHHH-HHHHHHhcCCCCCchhhccCCchHHHHHHhcCC--CCHHHHHHHHHHHH
Q 008437 297 NKELMLAAGVIPLLEKMISNSNS---HGAA-TALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--TEHQCKLDALHALY 370 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~---~~~A-~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--~~~~~~~~Al~aL~ 370 (565)
.-..+.+.+.+..|...+..... ++.+ .+...+.... ....+...++.|..+|.+- ....++..|..+..
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L----g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k 241 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL----GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAK 241 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc----CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHH
Confidence 55666677888888888876432 3311 1111111111 1223456677777766532 14556666666655
Q ss_pred HhccCCCChHHHHHcCchHHHhh-ccCC---CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q 008437 371 NLSTIPSNIPNLLSAGIISGLQS-LAVP---GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE 446 (565)
Q Consensus 371 nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~---~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e 446 (565)
.+-.. +...+|+.++. ++.+ ..-..+..++.+|..|+.+....-+... +..|+.|.+.|-+..+++++
T Consensus 242 ai~~~-------~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~ 313 (569)
T KOG1242|consen 242 AIMRC-------LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRK 313 (569)
T ss_pred HHHHh-------cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHH
Confidence 54221 22334444333 3221 2234457788999999998877777766 48999999999999999999
Q ss_pred HHHHHHHHhhc
Q 008437 447 QAVSCLFLLCN 457 (565)
Q Consensus 447 ~Av~~L~~Lc~ 457 (565)
.+..+|..+|.
T Consensus 314 a~~~~l~~~~s 324 (569)
T KOG1242|consen 314 AGIETLLKFGS 324 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 129
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.21 E-value=0.28 Score=56.30 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.++ .|++.+.+. |-+.|.-|...|-.=...+.-.-..=.+...+..|+++|++ .+.++|..|+.+|.-|+.
T Consensus 6 ~~i-~Llekmtss-DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvs--- 76 (1233)
T KOG1824|consen 6 VGI-NLLEKMTSS-DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVS--- 76 (1233)
T ss_pred HHH-HHHHHccCC-CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHh---
Confidence 344 788888887 88888888877766543332111122235678899999987 678999999999998862
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHH---HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcC-----CCCHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-----KTEHQCKLDALH 367 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~---~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~-----~~~~~~~~~Al~ 367 (565)
..++.=++. .++.|..-+-++..+ ..+.+.....+.............+.+.+...|.. +....++-.++.
T Consensus 77 Kvke~~le~-~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lD 155 (1233)
T KOG1824|consen 77 KVKEDQLET-IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLD 155 (1233)
T ss_pred hchHHHHHH-HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHH
Confidence 122221111 122233222233222 22444443344332211111122333333333332 213346666777
Q ss_pred HHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHH
Q 008437 368 ALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQ 445 (565)
Q Consensus 368 aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~ 445 (565)
.|..+-+.- +--.. ...++...++.-+......++++++.+|..|+..- ++.... +.+..|++=|.. ..+...
T Consensus 156 il~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~---~li~~Ll~~L~~~~q~~~~ 230 (1233)
T KOG1824|consen 156 ILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV---ELIEHLLKGLSNRTQMSAT 230 (1233)
T ss_pred HHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH---HHHHHHHhccCCCCchHHH
Confidence 666553321 11111 23455555666555566788899999999998843 333332 234455555543 456666
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh---hcCChhHHHHHHHHHHHHHhhcccC
Q 008437 446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS---VNGSTRGRDKAQRLLMLFREQRQRD 504 (565)
Q Consensus 446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~---~~~s~~~k~~A~~lL~~L~~~r~~~ 504 (565)
..-+.+|..+|+.... +-----...+|.+.+.. ...+++.|++...+|..+-+.-+.+
T Consensus 231 rt~Iq~l~~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 6777788888876542 11111235778887777 7789999999999999976555555
No 130
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.19 E-value=0.0024 Score=59.58 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=39.2
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
|.|-||.+-++.||++.|||.||-.|--+-+.. .++|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999998777765 56899998754
No 131
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.52 Score=52.71 Aligned_cols=212 Identities=12% Similarity=0.106 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.|+..|... |+.++..|+..|..||+.++++.-.+ -|.+..+|.... ++- +...-+....+|+.-.++
T Consensus 182 ~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSs--NNW-mLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 182 CFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSS--NNW-VLIKLLKLFAALTPLEPR 252 (877)
T ss_pred hHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccC--CCe-ehHHHHHHHhhccccCch
Confidence 345566666655 66666666666666666666655443 255555554321 121 222333444444433333
Q ss_pred hhHHHHhcCchHHHHHHhcCCcHHHHHHHHHH---------HhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHH
Q 008437 297 NKELMLAAGVIPLLEKMISNSNSHGAATALYL---------NLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDAL 366 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~---------nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al 366 (565)
-.+ ..+++|.+++.+... +.+|+ +++.. .+.-..+. -++..|-.++.+. |+..+--++
T Consensus 253 LgK-----KLieplt~li~sT~A----mSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fieds-DqNLKYlgL 320 (877)
T KOG1059|consen 253 LGK-----KLIEPITELMESTVA----MSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDS-DQNLKYLGL 320 (877)
T ss_pred hhh-----hhhhHHHHHHHhhHH----HHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcC-CccHHHHHH
Confidence 322 246777777766532 22222 22222 11111111 1455666666666 788888888
Q ss_pred HHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCH-HHH
Q 008437 367 HALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGEL-IEQ 445 (565)
Q Consensus 367 ~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~-~~~ 445 (565)
-|++-+...+. .+|.+ --+.+++.|.+.+..++-.|+.+|.-+.. .++-.+|+. .|+..+...++ .-+
T Consensus 321 lam~KI~ktHp---~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk------~LM~~~~~ae~t~yr 389 (877)
T KOG1059|consen 321 LAMSKILKTHP---KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK------TLMKHVEKAEGTNYR 389 (877)
T ss_pred HHHHHHhhhCH---HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH------HHHHHHHhccchhHH
Confidence 88887765332 22322 12345667788899999999999998887 445555543 35554444333 445
Q ss_pred HHHHHHHHHhhcCCh
Q 008437 446 EQAVSCLFLLCNGNE 460 (565)
Q Consensus 446 e~Av~~L~~Lc~~~~ 460 (565)
..-+.-+..+|+.+.
T Consensus 390 dell~~II~iCS~sn 404 (877)
T KOG1059|consen 390 DELLTRIISICSQSN 404 (877)
T ss_pred HHHHHHHHHHhhhhh
Confidence 555555667787653
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.17 Score=58.59 Aligned_cols=238 Identities=13% Similarity=0.013 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHH-HHhhcc
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMAL-FNLAVN 293 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL-~nLa~~ 293 (565)
-|.++-+++.|-+ .--|..|+..|..+..-.+=.-..-..-|+.|-++++|.+. -.+++-.-+.+= .-||.
T Consensus 471 PeQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~----a~ELrpiLVFIWAKILAv- 542 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS----ARELRPILVFIWAKILAV- 542 (1387)
T ss_pred hHhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc----hHhhhhhHHHHHHHHHhc-
Confidence 3666777776642 34466667666666644443334445689999999999983 344443322221 23565
Q ss_pred CchhhHHHHhcCchHHHHHHhcCC---cHHHH--HHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437 294 NNRNKELMLAAGVIPLLEKMISNS---NSHGA--ATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 367 (565)
Q Consensus 294 ~~~nk~~i~~~G~i~~Lv~lL~s~---~~~~~--A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~ 367 (565)
++.....+++.++-.-.+.+|..+ +.... |+-+|..+..+ .-.+....+.+.|..-+..|.++..+-.+.-.+-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 466677777776666666677652 11222 33344444433 3344555556777777777877535778888888
Q ss_pred HHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-----cccHHHH---hc-------CCCCH-
Q 008437 368 ALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-----AAGKEEM---NS-------TPGLV- 430 (565)
Q Consensus 368 aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-----~~~r~~i---~~-------~~g~v- 430 (565)
+|..|=. .+++|..=++.++.+.|+.++.+.-++++..|+-+|..+... ++....+ +. .+..+
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 8888865 456777778899999999999889999999999999888774 2211111 10 01222
Q ss_pred ---HHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437 431 ---SGLATVLDTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 431 ---~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
..|+.++..+++-++...+.+|..+..+..
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 367777778888888877777777766554
No 133
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0039 Score=60.28 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=47.5
Q ss_pred CcccccccccccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 71 EELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
..|.||+|.+.+.+-+ .-+|||.|+..|.++.+.. ...||+|+.++.+.++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEee
Confidence 5799999999999875 3479999999999999874 7889999999999988874
No 134
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.12 E-value=0.011 Score=48.49 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=65.9
Q ss_pred hHHHhhcc-CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437 388 ISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 466 (565)
Q Consensus 388 v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 466 (565)
|+.|++.+ .+.++.++..++.+|..+-. +.+++.|++++.+.++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889955 88899999999999884421 145889999999999999999999998762
Q ss_pred HhCCcHHHHHHhhhcCC-hhHHHHHHHHH
Q 008437 467 LQEGVIPALVSISVNGS-TRGRDKAQRLL 494 (565)
Q Consensus 467 ~~~G~v~~Lv~L~~~~s-~~~k~~A~~lL 494 (565)
...+++.|..++.+.. ..+|..|...|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2347889998777754 55588887766
No 135
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.21 Score=55.76 Aligned_cols=218 Identities=15% Similarity=0.175 Sum_probs=146.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+....++.+|++. -+-+|.+|+..+..+.-..++ .|.+ +|.|+.=|.. +|+.+|-.|+.+++.||.-+
T Consensus 144 DLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeAlr~~------FprL~EkLeD----pDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 144 DLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEALRPC------FPRLVEKLED----PDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHhHhhh------HHHHHHhccC----CCchHHHHHHHHHHHHHhhC
Confidence 4567889999987 788999999888877544333 4433 6888888877 79999999999999999877
Q ss_pred chhhHHHHhcCchHHHHHHhcCC-cHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH-
Q 008437 295 NRNKELMLAAGVIPLLEKMISNS-NSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY- 370 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~-~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~- 370 (565)
+.|-..+ -|.+.++|... +.+ ....-+..+|+-.+ ..++ ...+++|.+++.+..-....=.++.++-
T Consensus 213 PknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 213 PQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred Ccccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 7775544 46777777544 222 33444444454432 2232 3578999999987521222222222222
Q ss_pred -HhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437 371 -NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449 (565)
Q Consensus 371 -nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av 449 (565)
+++....+....+.. +++.|-.++.+.++.++...+-++..+..... ..+-.+ -..+++.|.+.++.++-.|+
T Consensus 284 ~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp--~~Vqa~---kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP--KAVQAH---KDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH--HHHHHh---HHHHHHHhccCCchhHHHHH
Confidence 333434455555554 67777778888999999988888888877432 222222 35677889999999999999
Q ss_pred HHHHHhhcCC
Q 008437 450 SCLFLLCNGN 459 (565)
Q Consensus 450 ~~L~~Lc~~~ 459 (565)
..|+.+....
T Consensus 358 dLl~gmVskk 367 (877)
T KOG1059|consen 358 DLLYGMVSKK 367 (877)
T ss_pred HHHHHHhhhh
Confidence 9998877643
No 136
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0039 Score=60.23 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHh
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLS 104 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~ 104 (565)
+-+.=+|.+|++.++|||+.+.||.|||+||.+++.
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 333457999999999999999999999999999875
No 137
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.05 E-value=0.03 Score=47.89 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHH--hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q 008437 403 TEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATV--LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ 468 (565)
Q Consensus 403 ~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~l--L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~ 468 (565)
+...+.+|+|||. +...+..+.+. |+++.++.. ++..+|-.+|.|+.++.+||.+++++++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4678899999997 56677778776 789998887 45578999999999999999999988776654
No 138
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.03 E-value=0.09 Score=48.62 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=96.8
Q ss_pred HHHHHcCchHHHhhccCCCC------hHHHHHHHHHHHHHhcCcc-cHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHH
Q 008437 380 PNLLSAGIISGLQSLAVPGD------PMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVS 450 (565)
Q Consensus 380 ~~iv~~G~v~~Lv~Ll~~~~------~~~~e~al~~L~nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~ 450 (565)
..++..|++..|++++.++. ..+...++.++..|..+.- ++ ..+.. ..|..++.++... +..+.+.|++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~-~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSD-SFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccH-HHHHHHHHHHccccccchHHHHHHH
Confidence 45778899999999887755 3666788999999988765 44 44443 6888899988753 6889999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
+|-++..++...-..|.++=-++.|+..+...++..+.+|..++..|-
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999877888888888999999888899999999999998865
No 139
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.44 Score=52.42 Aligned_cols=229 Identities=15% Similarity=0.083 Sum_probs=132.8
Q ss_pred hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc-CchhhHHHHhcCchHHHHHHhcCC--cHHHHHHHHHHHhc
Q 008437 255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELMLAAGVIPLLEKMISNS--NSHGAATALYLNLS 331 (565)
Q Consensus 255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-~~~nk~~i~~~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs 331 (565)
..+.+.++.|..+|.+. .+....+++.|..+...+-.. +...-+. .+|.++.-+... .+...++..|..++
T Consensus 209 ~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677777777777652 224455665555544433210 1111111 133333333322 23455666666666
Q ss_pred CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437 332 FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 411 (565)
Q Consensus 332 ~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~ 411 (565)
....-.-......+||.|.+.|.+. .+++++.+..+|..++..-+|....- .+|.|++-+.++... ...++..|.
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~---~ip~Lld~l~dp~~~-~~e~~~~L~ 357 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQK---IIPTLLDALADPSCY-TPECLDSLG 357 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHHhcCcccc-hHHHHHhhc
Confidence 5544444444578999999999888 99999999999999998777765221 567777744443322 244444443
Q ss_pred HHhcCcccHHHHhcCCCCHHHHHHHhhc----CCHHHHHHHHHHHHHhhcCCh--HHHHHHHhCCcHHHHHHhhhcCChh
Q 008437 412 NLAASAAGKEEMNSTPGLVSGLATVLDT----GELIEQEQAVSCLFLLCNGNE--KCCQMVLQEGVIPALVSISVNGSTR 485 (565)
Q Consensus 412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~~~--~~~~~v~~~G~v~~Lv~L~~~~s~~ 485 (565)
.-.... .++ +-.+..++.+|.+ .+...+..++.+.+|+|+--+ ....-.+ .-++|.|-..+....++
T Consensus 358 ~ttFV~-----~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 358 ATTFVA-----EVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPE 430 (569)
T ss_pred ceeeee-----eec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChh
Confidence 322211 122 1345555666554 466778999999999998543 2111111 13455555555566899
Q ss_pred HHHHHHHHHH-HHHhhc
Q 008437 486 GRDKAQRLLM-LFREQR 501 (565)
Q Consensus 486 ~k~~A~~lL~-~L~~~r 501 (565)
+|.-|.++|- ++++.+
T Consensus 431 vR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 431 VRAVAARALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999994 444443
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.68 Score=47.40 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=155.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCccc--h--hhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH
Q 008437 224 VLNEGENLGQKCNIVEQIRLLLKDDEEA--R--VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299 (565)
Q Consensus 224 ~L~s~~~~~~q~~Al~~L~~La~~~~~~--r--~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~ 299 (565)
-|... +..++.-+++.+.-+..+.+.+ . ..++.+|.++.++..+.. .|.++...|...|..++.. +..-.
T Consensus 90 GLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrialf-paale 163 (524)
T KOG4413|consen 90 GLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIALF-PAALE 163 (524)
T ss_pred cccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhc-HHHHH
Confidence 34444 6778888888888888665532 2 234578999999999877 6888999999999999864 55666
Q ss_pred HHHhcCchHHHH--HH-hcCCc-HHHHHHHHHHHhc-CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 300 LMLAAGVIPLLE--KM-ISNSN-SHGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 300 ~i~~~G~i~~Lv--~l-L~s~~-~~~~A~aaL~nLs-~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
.+.+......+- ++ .+..+ .+......+..+. ..++.......+|.+..|..=|+-..|.-++.+++...+.|..
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 666665544332 22 12222 2334455554443 3344444555578887777666642367788899999999998
Q ss_pred CCCChHHHHHcCchHHHhhccCC--CChHHHHHHHHHHHHHhc----CcccHHHHhcC-CCCHHHHHHHhhcCCHHHHHH
Q 008437 375 IPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAA----SAAGKEEMNST-PGLVSGLATVLDTGELIEQEQ 447 (565)
Q Consensus 375 ~~~nk~~iv~~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~----~~~~r~~i~~~-~g~v~~Lv~lL~~~s~~~~e~ 447 (565)
.+..+..+.+.|.|+.+-.++.. .++--.-.++.....+-. -.-.-+++++. .-+|....+++...++..++.
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaiea 323 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEA 323 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHH
Confidence 88899999999999999995532 333333334444333322 11111222211 123444566677789999999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCC
Q 008437 448 AVSCLFLLCNGNEKCCQMVLQEG 470 (565)
Q Consensus 448 Av~~L~~Lc~~~~~~~~~v~~~G 470 (565)
|+.+|..+-++.++ .+.++..|
T Consensus 324 AiDalGilGSnteG-adlllkTg 345 (524)
T KOG4413|consen 324 AIDALGILGSNTEG-ADLLLKTG 345 (524)
T ss_pred HHHHHHhccCCcch-hHHHhccC
Confidence 99999999887764 55666665
No 141
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0031 Score=63.53 Aligned_cols=55 Identities=27% Similarity=0.547 Sum_probs=46.1
Q ss_pred CCCCCCCCCcccccccccccCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 63 SGQMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 63 ~~~~~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
++.....|+.=.||||++--.+|-++. +|..||-.||-++... +.+||+|+.|..
T Consensus 291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 344556678889999999888887775 7999999999999984 788999998764
No 142
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.12 Score=58.38 Aligned_cols=244 Identities=14% Similarity=0.091 Sum_probs=153.2
Q ss_pred HHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHH-HhhccCchhhHHHHhcCchHHHHHHhcCCcH-H
Q 008437 243 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF-NLAVNNNRNKELMLAAGVIPLLEKMISNSNS-H 320 (565)
Q Consensus 243 ~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~-nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-~ 320 (565)
.++.....-|...++.|+.+.|+++... ........+..+|. .+....+ + ...+++++.+.+.+... .
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGL 557 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHH
Confidence 3443445567778899999999999876 44566666666665 3332211 1 12345555555554321 2
Q ss_pred HH--HHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH-HHHH-cCchHHHhhcc
Q 008437 321 GA--ATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP-NLLS-AGIISGLQSLA 395 (565)
Q Consensus 321 ~~--A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~-~iv~-~G~v~~Lv~Ll 395 (565)
++ +..++.||+.. +..|..|...-+++.+-.++-.. ++..+..++..+.||...+..-. .+++ ...++.....+
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~ 636 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL 636 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence 22 78888889776 45566676554555555555556 78899999999999987765333 3334 33444444444
Q ss_pred CCCChHHHHHHHHHHHHHhcCcccHHH-HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHH
Q 008437 396 VPGDPMWTEKSLAVLLNLAASAAGKEE-MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA 474 (565)
Q Consensus 396 ~~~~~~~~e~al~~L~nLa~~~~~r~~-i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~ 474 (565)
...+....-.+++++..+....++.-. +.+.-.....++.++.+.+..+|...+.+..++.....+....+.....++.
T Consensus 637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 444445555566666655554443333 4444467788888899999999999999888877766666666677677777
Q ss_pred HHHhhhcCChhHHHHHHHHHHHH
Q 008437 475 LVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 475 Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
+..+....-...++.|..-|...
T Consensus 717 l~~~~~~~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 717 LSGLQKLNRAPKREDAAPCLSAA 739 (748)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHH
Confidence 76665554444555555555443
No 143
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.95 E-value=0.36 Score=50.30 Aligned_cols=154 Identities=25% Similarity=0.259 Sum_probs=105.1
Q ss_pred CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCCCCC
Q 008437 259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDA 336 (565)
Q Consensus 259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~ 336 (565)
-.++.++.+|.+ .+..++..|+..|..+.. .-+++.|..+|...+.. ..|+-+|.
T Consensus 43 ~~~~~~~~~l~~----~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg-------- 99 (335)
T COG1413 43 EAADELLKLLED----EDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALG-------- 99 (335)
T ss_pred hhHHHHHHHHcC----CCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHH--------
Confidence 467888888887 567788888777555431 23578888999877543 33444332
Q ss_pred chhhccCCchHHHHHHhcC-CCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChH------------HH
Q 008437 337 KPIIGSSHAVPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM------------WT 403 (565)
Q Consensus 337 k~~I~~~g~i~~Lv~lL~~-~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~------------~~ 403 (565)
.++...+++.|+++|.. . +..++..|..+|..+-.. .++..|+.++.+.... ++
T Consensus 100 --~~~~~~a~~~li~~l~~d~-~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 100 --ELGDPEAVPPLVELLENDE-NEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred --ccCChhHHHHHHHHHHcCC-cHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 23445789999999995 6 888999999999887442 2477777766554321 22
Q ss_pred HHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 404 EKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 404 e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
..++..|..+ ..+..++.|...+...+..++..|+.+|..+....
T Consensus 167 ~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 167 AAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 2233333222 23467888888998888899999999998887764
No 144
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.94 E-value=0.0061 Score=59.71 Aligned_cols=62 Identities=27% Similarity=0.340 Sum_probs=44.7
Q ss_pred cccccccccccCCceec-CCCcccchHHHHHHHhc-CCCCCCCCCCC----CCCCCCcccHHHHHHHH
Q 008437 72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQK----LPHLCLTPNYCVKGLIA 133 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~t~~~----l~~~~l~pn~~l~~~i~ 133 (565)
+++|||+......||+. .|||.|||..|+..+.. -...||+-+-+ +....+.+...++.-|+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr 243 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIR 243 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHH
Confidence 48999999999999986 59999999999999864 23459985433 12234555545555553
No 145
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.89 E-value=0.24 Score=53.28 Aligned_cols=116 Identities=17% Similarity=0.086 Sum_probs=82.2
Q ss_pred hHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437 307 IPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS 384 (565)
Q Consensus 307 i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~ 384 (565)
+..|+..|...+. +..++.+|. .|...++.+.|+.+|.+. ++.++..++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg----------~i~~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG----------WLGGRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh----------cCCchHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hc
Confidence 6777777765532 222333332 234556778888888877 88888777766655 12
Q ss_pred cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 385 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 385 ~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
....+.|+.++++.++.+...|+.+|..|-. ...++.|...+.+.++.++..|+..|..+
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 3356678888888888889999999887654 35677788888888999999999988654
No 146
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.22 Score=57.68 Aligned_cols=218 Identities=15% Similarity=0.071 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhhccCchhhHHH---HhcCchHHHHHHhcCCcHH-HHHHHHHH--HhcCCCCCchhhccCCchHHHHHHh
Q 008437 280 QEIGAMALFNLAVNNNRNKELM---LAAGVIPLLEKMISNSNSH-GAATALYL--NLSFLDDAKPIIGSSHAVPFLVELC 353 (565)
Q Consensus 280 q~~A~~aL~nLa~~~~~nk~~i---~~~G~i~~Lv~lL~s~~~~-~~A~aaL~--nLs~~~~~k~~I~~~g~i~~Lv~lL 353 (565)
|.+-+++|.-|+..-+-....+ ..-|++|-.+++|+++... ......++ -|+.++..+.-+...++-...+..|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 3444555555554434444444 2459999999999987432 22444443 3677777777777665556666666
Q ss_pred cCC--CCHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhcCcccHHHHhcCCCC
Q 008437 354 KGK--TEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEEMNSTPGL 429 (565)
Q Consensus 354 ~~~--~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~ 429 (565)
..+ .+++-+.-|+-+|..++.+-. ......+.+.|..-++.+.++ .+-++.-++-.|..|-.+-+...-.....++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 652 345667777778888876543 555666778888777877764 5667777777777777654333333333488
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhcCC----hHHHHHH-----------HhCCcHH----HHHHhhhcCChhHHHHH
Q 008437 430 VSGLATVLDTGELIEQEQAVSCLFLLCNGN----EKCCQMV-----------LQEGVIP----ALVSISVNGSTRGRDKA 490 (565)
Q Consensus 430 v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~----~~~~~~v-----------~~~G~v~----~Lv~L~~~~s~~~k~~A 490 (565)
...|+.+|....++++..|+-+|..+-.+. ++....+ .-|..+. .|+.+...|++-++..-
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999998877642 2222111 1233344 56777888999888776
Q ss_pred HHHHHHH
Q 008437 491 QRLLMLF 497 (565)
Q Consensus 491 ~~lL~~L 497 (565)
+-.|..+
T Consensus 724 ~v~ls~~ 730 (1387)
T KOG1517|consen 724 VVALSHF 730 (1387)
T ss_pred HHHHHHH
Confidence 6666654
No 147
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0065 Score=62.06 Aligned_cols=46 Identities=20% Similarity=0.554 Sum_probs=39.2
Q ss_pred Ccccccccccc-cCCc------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 71 EELRCPISLQL-MYDP------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 71 ~~f~CpI~~~~-m~dP------------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
.+-.|-||++= |.-| =-++|||.+--+|+.-|++. +.|||.|+.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 56789999965 5544 57899999999999999986 78999999884
No 148
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.76 E-value=1.3 Score=46.16 Aligned_cols=164 Identities=20% Similarity=0.195 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.+...|.+. +..+|..|+..|..+ ...-.++.|+.+|.. +.+..++..++.+|..+- +.
T Consensus 74 ~av~~l~~~l~d~-~~~vr~~a~~aLg~~-----------~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~--~~ 136 (335)
T COG1413 74 EAVPLLRELLSDE-DPRVRDAAADALGEL-----------GDPEAVPPLVELLEN---DENEGVRAAAARALGKLG--DE 136 (335)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHcc-----------CChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcC--ch
Confidence 4556667777766 677777777644333 224468888888874 267788888888888774 22
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHH-HhcCC----CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYL-NLSFL----DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~-nLs~~----~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
.++..|+..+....... ++..+. .+... -.....++....++.|..++... +..++..|..+|.
T Consensus 137 ---------~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~ 205 (335)
T COG1413 137 ---------RALDPLLEALQDEDSGS-AAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALG 205 (335)
T ss_pred ---------hhhHHHHHHhccchhhh-hhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHH
Confidence 12666777776544222 111110 00000 00012234456889999999988 7789999999999
Q ss_pred HhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 371 NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 371 nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
.+.... ..+++.+...+.+.+..++..++..|..+-.
T Consensus 206 ~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 206 QLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred Hhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 887654 3455666667777778877888777776543
No 149
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.71 E-value=0.0038 Score=64.73 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=31.3
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHh
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS 104 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~ 104 (565)
.+++.||||+..++||++++|||+.||.|-..-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 47899999999999999999999999999775544
No 150
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.58 E-value=0.067 Score=51.35 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHc----------------CchHHHhhc-cCC-----CChHHHHHHHHHHHHHhcC
Q 008437 359 HQCKLDALHALYNLSTIPSNIPNLLSA----------------GIISGLQSL-AVP-----GDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 359 ~~~~~~Al~aL~nLs~~~~nk~~iv~~----------------G~v~~Lv~L-l~~-----~~~~~~e~al~~L~nLa~~ 416 (565)
......++..|.||+..++.+..+++. .++..|+++ .+. ....-....+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 345677888899998888777766542 366778884 341 2234457899999999999
Q ss_pred cccHHHHhcCCCC---HHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh---CCcHHHHHHhhhcC---ChhHH
Q 008437 417 AAGKEEMNSTPGL---VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ---EGVIPALVSISVNG---STRGR 487 (565)
Q Consensus 417 ~~~r~~i~~~~g~---v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~---~G~v~~Lv~L~~~~---s~~~k 487 (565)
+++|.-+++...+ +..|+..+...+..-+.-++++|.|+|...... ..++. .+++|.|+.-+.+. ++.=.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGpEe~d~ee~ 167 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGPEELDEEEM 167 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCCCcCCHHHH
Confidence 9999999876433 455666666678888999999999999887654 44444 37788876544432 22222
Q ss_pred HHHHHHHHHHHhhcccC
Q 008437 488 DKAQRLLMLFREQRQRD 504 (565)
Q Consensus 488 ~~A~~lL~~L~~~r~~~ 504 (565)
++--.-|+.|-..++|+
T Consensus 168 ~~lp~~LQ~L~~dK~RE 184 (192)
T PF04063_consen 168 EKLPPELQLLPPDKKRE 184 (192)
T ss_pred HcCCHHHhhcCCCCccC
Confidence 22223444555555554
No 151
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.014 Score=58.17 Aligned_cols=47 Identities=21% Similarity=0.646 Sum_probs=37.9
Q ss_pred cccccccccc--CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLM--YDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 73 f~CpI~~~~m--~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
..|-||+.=| .|-+ ++||.|.|-+.||++|+..-...||+|+.++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 5699998644 2444 789999999999999998656779999988754
No 152
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.24 E-value=1.8 Score=47.51 Aligned_cols=57 Identities=25% Similarity=0.148 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 440 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 440 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
.+..++..|+.+|...+-+-.. .+..+.+.-.|-..+.+.++.+|+.|.-+|+.|+.
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 5667788888888665543321 12233444455667888899999999999999983
No 153
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.22 E-value=0.019 Score=42.53 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=24.7
Q ss_pred cccccccccccCCcee-cCCCcc--cchHHHHHH-HhcCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVI-IASGQT--YERICIEKW-LSDGHSTCPKTQQK 116 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~-~~~g~t--y~r~~I~~~-~~~~~~~cP~t~~~ 116 (565)
.+.||||...|+-||- ..|.|. ||-...-+. ...+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3789999999999994 457765 777544444 34456789999864
No 154
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=1.3 Score=48.50 Aligned_cols=276 Identities=18% Similarity=0.155 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchh-hhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV-FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~-~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~ 293 (565)
++.+-..+..|....+..+| .+++-+-.+.++-.--+. .+.-.++||.|-.-+.. .++..+..-+.-|..|- .
T Consensus 123 Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~----~n~~tR~flv~Wl~~Ld-s 196 (675)
T KOG0212|consen 123 FNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYV----INPMTRQFLVSWLYVLD-S 196 (675)
T ss_pred hHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHh-c
Confidence 45555666666655344443 445555555443211111 23324444444444433 56777766666666552 1
Q ss_pred CchhhHHHH-hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 294 NNRNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 294 ~~~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
.+ ....+- -...++-|..+|..... +..+-.+|.++-..=.++....+ ...++.|+.-+.+. ++..+..|+.-|
T Consensus 197 ~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi 274 (675)
T KOG0212|consen 197 VP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWI 274 (675)
T ss_pred CC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC-cHHHHHHHHHHH
Confidence 22 222222 23567777778865532 22222223222110011111112 35778889888888 899999999999
Q ss_pred HHhccCCCChHHHHHcCchHHHhhccCCCCh-HHHHHHH---HHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437 370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDP-MWTEKSL---AVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQ 445 (565)
Q Consensus 370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~-~~~e~al---~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~ 445 (565)
.....-.++.....-.|++..++..+.+.+. .+++.+. ..|..++..+....+ ++-...+..|.+.+.......+
T Consensus 275 ~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tr 353 (675)
T KOG0212|consen 275 QEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETR 353 (675)
T ss_pred HHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHH
Confidence 9988777766666668888999996655444 3444333 235556665555544 3433567778888888888888
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
-.++.-+..|-..-++ .-.+.....++.|+.-+.+.++.+-..+-.+|..+...
T Consensus 354 i~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8887776666655542 33444567888998888888888888888888877644
No 155
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.85 Score=51.70 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=80.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437 346 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 425 (565)
Q Consensus 346 i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~ 425 (565)
+..|-+.|.+. +...+=-|+..|..+...+.+...=-+ ..+++-+++.|..++..|+.++..|.. +.|...|+.
T Consensus 315 iniLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~ 388 (866)
T KOG1062|consen 315 INILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN-ESNVRVMVK 388 (866)
T ss_pred HHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence 34444444444 444444455555544443332211111 134556778888999999999988876 445555543
Q ss_pred CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc-CChH--H----HHH-------HHhCCcHHHHHHhhhcCChhHHHHHH
Q 008437 426 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCN-GNEK--C----CQM-------VLQEGVIPALVSISVNGSTRGRDKAQ 491 (565)
Q Consensus 426 ~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~-~~~~--~----~~~-------v~~~G~v~~Lv~L~~~~s~~~k~~A~ 491 (565)
.|+.+|...++..+...++-+..++. ..+. + .-. ++...++..|+.|..++-+...+.+.
T Consensus 389 ------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~ 462 (866)
T KOG1062|consen 389 ------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAV 462 (866)
T ss_pred ------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHH
Confidence 47888888888888888877776663 2211 1 111 12234677788888877555555555
Q ss_pred HHHHH
Q 008437 492 RLLML 496 (565)
Q Consensus 492 ~lL~~ 496 (565)
.-|+.
T Consensus 463 ~rLy~ 467 (866)
T KOG1062|consen 463 LRLYL 467 (866)
T ss_pred HHHHH
Confidence 44433
No 156
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.019 Score=55.85 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCcccccccccccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 008437 70 PEELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 123 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 123 (565)
-..|+|||++-.|.+-. +-+|||.|.-.++.+.- ..+|++|++++...+.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 36799999999999976 44899999988887665 45799999999887644
No 157
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.89 E-value=0.036 Score=41.52 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437 359 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 359 ~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL 413 (565)
+.++..|+++|.+++........-....+++.|+.++.+++..++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578999999999887665555556678999999988888889999999999875
No 158
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.88 E-value=4.2 Score=40.26 Aligned_cols=233 Identities=13% Similarity=0.087 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhccc--------ccCCCHHHHHHHHHHH
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESA--------VCERNSYAQEIGAMAL 287 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~--------~~s~~~~~q~~A~~aL 287 (565)
.+..++-.|.+ ++.+..|+.+|...-+..++.-..+- .-|.+..|++=.-+. .......-.-+|+..|
T Consensus 27 k~~~~i~~l~~---~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 27 KAYQLILSLVS---PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred chhhHHHHhhC---CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 35566666653 45566677777666544444333333 356666665432211 0011122234566666
Q ss_pred HHhhccCchhhHHHHhcCchHHHHHHhcCCc-------HHHHHHHHHHHhcCCCCCc--hhhccCCchHHHHHHhcCCCC
Q 008437 288 FNLAVNNNRNKELMLAAGVIPLLEKMISNSN-------SHGAATALYLNLSFLDDAK--PIIGSSHAVPFLVELCKGKTE 358 (565)
Q Consensus 288 ~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~-------~~~~A~aaL~nLs~~~~~k--~~I~~~g~i~~Lv~lL~~~~~ 358 (565)
.-++ ++++.|..+.++..---|-.+|..+. -+-.+.+++..|..+++.- ..+...++||..++.++.| +
T Consensus 104 QcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-S 181 (293)
T KOG3036|consen 104 QCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-S 181 (293)
T ss_pred HHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-c
Confidence 6666 57899999999876555566665432 1344888888887765432 2334579999999999999 8
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHH--------cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCC
Q 008437 359 HQCKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGL 429 (565)
Q Consensus 359 ~~~~~~Al~aL~nLs~~~~nk~~iv~--------~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~ 429 (565)
...+..|.-++..+-.++..-..+.. +-.+..++. +.+.++..+.+.++.+..+|+.++..|.++...
T Consensus 182 elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~c--- 258 (293)
T KOG3036|consen 182 ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSC--- 258 (293)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhh---
Confidence 88899999988888777764443332 123333444 566788999999999999999999888887532
Q ss_pred HHHHH-----HHhhcCCHHHHHHHHHHHHHhhc
Q 008437 430 VSGLA-----TVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 430 v~~Lv-----~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
+|..+ ..+-..++..+..-...|.+||.
T Consensus 259 lPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 259 LPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred CcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 22211 12223455555555555555553
No 159
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=2 Score=48.55 Aligned_cols=281 Identities=9% Similarity=0.065 Sum_probs=158.8
Q ss_pred chhhHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 213 NVFERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 213 ~~~e~i~~ll~-~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
.+...+..+++ .+++. +|..+..|+.+...+..+.+..+..-...+++|.++.++.+ ...-++..++++|..++
T Consensus 360 ~Iv~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D----~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD----PSLWVKDTAAWTLGRIA 434 (859)
T ss_pred cchhhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC----chhhhcchHHHHHHHHH
Confidence 34456777776 77777 99999999999999997666666666668899999999986 55667788999999998
Q ss_pred ccCchhhHHHH-hcCchHHHHHHhcC-CcHHHHHHHHHHHhcCC--CCCchh----hccCCchHHHH----HHhc--CCC
Q 008437 292 VNNNRNKELML-AAGVIPLLEKMISN-SNSHGAATALYLNLSFL--DDAKPI----IGSSHAVPFLV----ELCK--GKT 357 (565)
Q Consensus 292 ~~~~~nk~~i~-~~G~i~~Lv~lL~s-~~~~~~A~aaL~nLs~~--~~~k~~----I~~~g~i~~Lv----~lL~--~~~ 357 (565)
.+..+....-. ....++.++.-|.. +....+++|++.+|+.. +..... ... ...+.++ +.-+ ++.
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccc
Confidence 54432211111 12345555554443 34457799999999832 222222 221 2233333 3322 223
Q ss_pred CHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhh---------ccCCCC----hHHHHHHHHHHHHHhc-CcccHHH
Q 008437 358 EHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQS---------LAVPGD----PMWTEKSLAVLLNLAA-SAAGKEE 422 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~---------Ll~~~~----~~~~e~al~~L~nLa~-~~~~r~~ 422 (565)
....+..|-.||..|..+.. ...-++. +.....+. .+...+ ..++...+++|..+-. ....+..
T Consensus 514 qsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~ 592 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE 592 (859)
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh
Confidence 45688889999998875443 3332222 11111111 221111 2334444455554433 2234444
Q ss_pred HhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHHHHHHHh
Q 008437 423 MNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~lL~~L~~ 499 (565)
+.+ .....+++++.+ .+..+.|.|..++..+...=. +..+. -+...|-|..=+ ......+--.|+.+.--|.+
T Consensus 593 ~~d--~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ky--m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r 668 (859)
T KOG1241|consen 593 VSD--QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKY--MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR 668 (859)
T ss_pred HHH--HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 444 356677777776 566678887777776664322 22111 234455554433 33334444555566666655
Q ss_pred hcccC
Q 008437 500 QRQRD 504 (565)
Q Consensus 500 ~r~~~ 504 (565)
.-+.+
T Consensus 669 aL~~~ 673 (859)
T KOG1241|consen 669 ALEDD 673 (859)
T ss_pred HHHhh
Confidence 54444
No 160
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.62 E-value=0.4 Score=48.89 Aligned_cols=222 Identities=13% Similarity=0.066 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHH-hcCchHHHHHHhcCC--cH--HHHHHHHHHHhcCCCCCchhhcc-CCchHHH
Q 008437 276 NSYAQEIGAMALFNLAVNNNRNKELML-AAGVIPLLEKMISNS--NS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFL 349 (565)
Q Consensus 276 ~~~~q~~A~~aL~nLa~~~~~nk~~i~-~~G~i~~Lv~lL~s~--~~--~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~L 349 (565)
+...+--|+.+|.+++. ..+.|..+- +.-.-..++.++++. .. +-+..-+++.|+...+..+.|-. ...|.-|
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44567778899999986 455555544 444667778888764 22 34577777778777665544444 3678888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccC--CCChHHHHHcCchHHHhh-ccCCC--ChHHHH---HHHHHHHH----HhcCc
Q 008437 350 VELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQS-LAVPG--DPMWTE---KSLAVLLN----LAASA 417 (565)
Q Consensus 350 v~lL~~~~~~~~~~~Al~aL~nLs~~--~~nk~~iv~~G~v~~Lv~-Ll~~~--~~~~~e---~al~~L~n----La~~~ 417 (565)
+++.+......+.+-++.++.|++.- .+....+.-.|-+.+-++ |++.+ +..++. ..-..|.+ ||..+
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99988765667888999999999862 245555555665566666 44432 333221 11122211 22111
Q ss_pred ------------------------ccHHHHh-cCCCCHHHHHHHhhcCCHH-HHHHHHHHHHHhhcCChHHHHHHHhCCc
Q 008437 418 ------------------------AGKEEMN-STPGLVSGLATVLDTGELI-EQEQAVSCLFLLCNGNEKCCQMVLQEGV 471 (565)
Q Consensus 418 ------------------------~~r~~i~-~~~g~v~~Lv~lL~~~s~~-~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 471 (565)
.+...+. +.-..+..|.+++....+. ...-|+.-+..+.+..++....+..-|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 1222222 2223566777888765444 4556677777777777777888888899
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 472 IPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 472 v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
=..+++|+...++++|-.|..+++.+-
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999988754
No 161
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.61 E-value=0.52 Score=47.01 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHh-cCchHHHHHH-h------cCCc------H-HHHHHHHHHHhcCCCCCchhh
Q 008437 276 NSYAQEIGAMALFNLAVNNNRNKELMLA-AGVIPLLEKM-I------SNSN------S-HGAATALYLNLSFLDDAKPII 340 (565)
Q Consensus 276 ~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i~~Lv~l-L------~s~~------~-~~~A~aaL~nLs~~~~~k~~I 340 (565)
+++.++.|+.-|..--...++-.-.+-+ .|.+..|..= + ..+. . ..+|.+.|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4567777755444322111222333444 3766665442 2 2221 1 244888888899999999999
Q ss_pred ccCCchHHHHHHhcCCC----CHHHHHHHHHHHHHhccCC--CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 341 GSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 341 ~~~g~i~~Lv~lL~~~~----~~~~~~~Al~aL~nLs~~~--~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
.++...-.|.-.|.... -+-.+-.+++++..|...+ +....+.+.++||..++.++.|+...+..|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88877666666665431 2357888999999998744 45666778999999999888888888888999998888
Q ss_pred cCcccHHHHhcCCC-------CHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHH-HH----Hhhhc
Q 008437 415 ASAAGKEEMNSTPG-------LVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA-LV----SISVN 481 (565)
Q Consensus 415 ~~~~~r~~i~~~~g-------~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~-Lv----~L~~~ 481 (565)
.++.|-.-+..+.. ++..++.-| ...+++.-.+.+++-..|+.+.. .+.++.+ -+|. |- .-...
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~~--~LP~~Lrd~~f~~~l~ 244 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALRQ--CLPDQLRDGTFSNILK 244 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHHH--HS-GGGTSSTTTTGGC
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHHH--hCcHHHhcHHHHHHHh
Confidence 87777665544322 333333332 34689999999999999999875 3443332 1222 11 12223
Q ss_pred CChhHHHHHHHHHHHHH
Q 008437 482 GSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 482 ~s~~~k~~A~~lL~~L~ 498 (565)
+++.+|+.-..++.++.
T Consensus 245 ~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 245 DDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp S-HHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 57777777777776653
No 162
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.55 E-value=0.2 Score=56.08 Aligned_cols=148 Identities=10% Similarity=0.040 Sum_probs=96.7
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH---HHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP---NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~---~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~ 421 (565)
.+..++..|++. ++.++..|+..+..|+..-.++. .+...|+| |.+-+....+++.-..+++|..++..-..-.
T Consensus 800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 445666778888 89999999999998875444442 23334443 5556667788887777777777765332111
Q ss_pred HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437 422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~ 495 (565)
..--..+.+|.|.-+|++...+++++++..+..||.++++....-.=--+---|++++..-....|+.|...+-
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11112378999999999999999999999999999988653211000011123566666666667776655433
No 163
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.45 E-value=3.3 Score=48.12 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=123.8
Q ss_pred hhhccCCHHHHHHHhcccccC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhc----CCc------HHHH
Q 008437 254 FTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMIS----NSN------SHGA 322 (565)
Q Consensus 254 ~i~~~G~i~~Lv~lL~s~~~s-~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~----s~~------~~~~ 322 (565)
.|.+.|++..|+.+|.+-.+. .+.......+..|...+. -..||+.+.+.|+++.|++.|. .+. ..+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 456789999999999764321 233444455555555554 5789999999999999999884 211 2233
Q ss_pred HHHHHHHh---cCCCCCchhhc---c-------CCchHHHHHHhcCC---CCHHHHHHHHHHHHHhccCCCChHHHHHcC
Q 008437 323 ATALYLNL---SFLDDAKPIIG---S-------SHAVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAG 386 (565)
Q Consensus 323 A~aaL~nL---s~~~~~k~~I~---~-------~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G 386 (565)
...++..| +..++...... . ..-+..|++.+.+. .++......+++|-+|+..++.+..++-.-
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 33333332 22111111111 1 12356666666654 267888999999999997665544432211
Q ss_pred chHHHhhc--cCCCChHHHHHHHHHHHHHhc----C---cccHHHHhcCCCCHHHHHHHhhcC--------CHHHH----
Q 008437 387 IISGLQSL--AVPGDPMWTEKSLAVLLNLAA----S---AAGKEEMNSTPGLVSGLATVLDTG--------ELIEQ---- 445 (565)
Q Consensus 387 ~v~~Lv~L--l~~~~~~~~e~al~~L~nLa~----~---~~~r~~i~~~~g~v~~Lv~lL~~~--------s~~~~---- 445 (565)
. .+.+++ ++.....--...+..+..++. + ..-|..|++. |.+...+++|... +++-+
T Consensus 271 F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1 222221 111100000122334444433 2 2456677776 8888888887642 33333
Q ss_pred ----HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh
Q 008437 446 ----EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478 (565)
Q Consensus 446 ----e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L 478 (565)
..++.+|.-||..... .+.++.+++++.|-.|
T Consensus 349 ~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~L 384 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRL 384 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHh
Confidence 3567788888887653 4444666667666544
No 164
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.026 Score=58.61 Aligned_cols=43 Identities=19% Similarity=0.500 Sum_probs=38.3
Q ss_pred cccccccccccCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 008437 72 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ 114 (565)
Q Consensus 72 ~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~t~ 114 (565)
-|.|||..+-=.| |+.+.|||..++.+|.+-...|. ..||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3899999987766 88999999999999999999887 7799994
No 165
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.23 E-value=0.14 Score=48.61 Aligned_cols=78 Identities=24% Similarity=0.297 Sum_probs=65.0
Q ss_pred hHHHHHcCchHHHhhccCC---------CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437 379 IPNLLSAGIISGLQSLAVP---------GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449 (565)
Q Consensus 379 k~~iv~~G~v~~Lv~Ll~~---------~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av 449 (565)
...+++.||+..|+.++.. .+......++.+|..|..+..|...++.+++++..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 4466778899998885521 3446778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008437 450 SCLFLLC 456 (565)
Q Consensus 450 ~~L~~Lc 456 (565)
.+|..||
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.15 E-value=0.14 Score=45.11 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=63.6
Q ss_pred ccchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Q 008437 211 GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNL 290 (565)
Q Consensus 211 ~~~~~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nL 290 (565)
+.+.++.+..|++.|....++....-|+..|..+++..+..|..+.+.|+-..+..++.+ .|++++..|+.++..|
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h----~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH----EDPEVRYEALLAVQKL 113 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-----SSHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC----CCHHHHHHHHHHHHHH
Confidence 334457888999999554477888889999999999999999999889999999999988 7999999999988876
Q ss_pred h
Q 008437 291 A 291 (565)
Q Consensus 291 a 291 (565)
-
T Consensus 114 m 114 (119)
T PF11698_consen 114 M 114 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 167
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.00 E-value=0.91 Score=48.11 Aligned_cols=242 Identities=18% Similarity=0.166 Sum_probs=131.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..++.-|..+.+...|+.++-.|..-+. +++.|..+...|.+..+++.+.... .+...--.++.++.-|+ .+.
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~--~d~~~~l~~a~i~~~l~-~d~ 96 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAP--DDDILALATAAILYVLS-RDG 96 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhcccc--chHHHHHHHHHHHHHHc-cCC
Confidence 4567788888865577889998888888874 6789999999999999999996531 22233333333344444 333
Q ss_pred hhhHHHHhcCchHHHHHHhcC--C-cHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcC--------CCCHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISN--S-NSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKG--------KTEHQCK 362 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s--~-~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~--------~~~~~~~ 362 (565)
.+-..+...+.+..++.+|.. . +.....- ...+..+.. ...+..+.+++.. .....-+
T Consensus 97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred cchhhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccc
Confidence 333343455667777888771 1 0000000 000000000 0111111111100 0012233
Q ss_pred HHHHHHHHHhc---------------cCCCChHHHHHcCchHHHhhccC----C-------C-----ChHHHHHHHHHHH
Q 008437 363 LDALHALYNLS---------------TIPSNIPNLLSAGIISGLQSLAV----P-------G-----DPMWTEKSLAVLL 411 (565)
Q Consensus 363 ~~Al~aL~nLs---------------~~~~nk~~iv~~G~v~~Lv~Ll~----~-------~-----~~~~~e~al~~L~ 411 (565)
--|+.+|-.++ ..+--|..+.+.|++..+++++. . . +....+.++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 44444444442 11124666777889999999542 1 0 1234577899999
Q ss_pred HHhcC-cccHHHHhcCCC-CHHHHHH-Hhhc---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCC
Q 008437 412 NLAAS-AAGKEEMNSTPG-LVSGLAT-VLDT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 470 (565)
Q Consensus 412 nLa~~-~~~r~~i~~~~g-~v~~Lv~-lL~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 470 (565)
+.+.. .++........+ .+..+.. ++.. ........++++|.||+.+++..+..+...+
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 88763 445555544422 2333333 3332 2233467889999999998866555555443
No 168
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.42 Score=52.97 Aligned_cols=168 Identities=14% Similarity=0.130 Sum_probs=111.4
Q ss_pred cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc--------CchHHHHHHhcCCcH--HHHHHHHH
Q 008437 258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA--------GVIPLLEKMISNSNS--HGAATALY 327 (565)
Q Consensus 258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~--------G~i~~Lv~lL~s~~~--~~~A~aaL 327 (565)
..++|.|..+|.+ ++...++-|..+|..++.+. ..+.+. =.+|.++.+.++++. +..|++.+
T Consensus 127 pelLp~L~~~L~s----~d~n~~EgA~~AL~KIcEDs----a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 127 PELLPQLCELLDS----PDYNTCEGAFGALQKICEDS----AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred hhHHHHHHHHhcC----CcccccchhHHHHHHHHhhh----HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 5678999999987 67778899999999997422 112221 147888888888754 45566665
Q ss_pred HHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHH
Q 008437 328 LNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKS 406 (565)
Q Consensus 328 ~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~a 406 (565)
-..-.. ..+..+.. ...++.|..+-.+. +++++++.+.+|..|......|..=-=.++|+-++....+.+..+.-+|
T Consensus 199 Nq~i~~-~~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA 276 (885)
T KOG2023|consen 199 NQFIII-QTQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA 276 (885)
T ss_pred hheeec-CcHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence 332221 12222222 35677777777666 9999999999999987544333222224677778887777788888999
Q ss_pred HHHHHHHhcCcccHHHHhcC-CCCHHHHHH
Q 008437 407 LAVLLNLAASAAGKEEMNST-PGLVSGLAT 435 (565)
Q Consensus 407 l~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~ 435 (565)
+.....+|..+--+..+..+ +..||.|++
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 99999999988555554332 134555554
No 169
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.85 E-value=0.12 Score=38.64 Aligned_cols=55 Identities=20% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 442 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 442 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
+.+++.|+.+|.+++....+.... ....+++.|+.++.+.++.+|..|...|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468899999999988877654443 4457899999999999999999999988654
No 170
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.75 E-value=1.3 Score=46.24 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=138.8
Q ss_pred hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH-----HHHh--cCchHHHHHHhcCCcHHHHHHHHH
Q 008437 255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE-----LMLA--AGVIPLLEKMISNSNSHGAATALY 327 (565)
Q Consensus 255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~-----~i~~--~G~i~~Lv~lL~s~~~~~~A~aaL 327 (565)
+...|.+..|+..|.. -+-+.+..++.+..++-.....++. .+.+ ..++..|+.--..++..-.+-..|
T Consensus 72 i~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence 4556888888888876 6788888888888887654433432 2222 234555554445555555566677
Q ss_pred HHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC-CCChHHHHHc---CchHHHhhccCCCChHHH
Q 008437 328 LNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSA---GIISGLQSLAVPGDPMWT 403 (565)
Q Consensus 328 ~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~-~~nk~~iv~~---G~v~~Lv~Ll~~~~~~~~ 403 (565)
.....++.....|-.+..+..+.+.+..+ +-++..+|..++..|-.. .......+.. ..+.....|+.+++-.++
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 77777766666666677888899999988 899999999999987654 3344444443 345555558888999999
Q ss_pred HHHHHHHHHHhcCcccHHHH---hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 404 EKSLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 404 e~al~~L~nLa~~~~~r~~i---~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
..++.+|..|-....+...| +..+.-+..++.+|++.+..+|-.|..++--...++
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999999988887755 555567888888888999999999999886544433
No 171
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.70 E-value=0.67 Score=50.42 Aligned_cols=152 Identities=21% Similarity=0.150 Sum_probs=111.8
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCCh----HHHHHHHHHHHHHhcCcccH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAASAAGK 420 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~~~~~r 420 (565)
....+.+++.++ +...+..|+..|..|+.+..-...++...++..|..++.+++. .+...++.++..|-.+.---
T Consensus 84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 446778888888 7788888999999999999999999999999999998877643 44455566665555433211
Q ss_pred HHHhcCCCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 421 EEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
-..+.. .+|...+.+.. ..+..+-..|+.+|-++..++....+.+.++--+..|+..+..++.+...+|..+|..|-
T Consensus 163 W~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 112222 34555555542 245567788999999988888767888889988999988888888889888888887754
No 172
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.46 E-value=2 Score=42.99 Aligned_cols=194 Identities=13% Similarity=0.089 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhccccc---CC--CH---HHHHHHHHHHHHhhccCchhhHH
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVC---ER--NS---YAQEIGAMALFNLAVNNNRNKEL 300 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~---s~--~~---~~q~~A~~aL~nLa~~~~~nk~~ 300 (565)
+++.|..|+.+|..--...++.--.+- .-|.+..|++=+-+--. .. +. .-..+|+..|.-+|. +++.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 678888888777665433333333333 47888888764432110 01 11 122455566666774 7899999
Q ss_pred HHhcCchHHHHHHhcCCcH-------HHHHHHHHHHhcCCCCC--chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 301 MLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 301 i~~~G~i~~Lv~lL~s~~~-------~~~A~aaL~nLs~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
+.++...--|..+|...+. +-.+.+++..|...++. -..+...+.+|..++.++.| +.-.+..|.-++..
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 9999988778888865421 23377788877765432 23334579999999999999 88888889988888
Q ss_pred hccCCCChHHHH-------H-cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437 372 LSTIPSNIPNLL-------S-AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 425 (565)
Q Consensus 372 Ls~~~~nk~~iv-------~-~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~ 425 (565)
+-.++..-..+. . ..++..++. +..+.++.+.+..+.+-..|+.++.+|.++..
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 866554322222 1 234555555 56677899999999999999999999988754
No 173
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.34 E-value=4.3 Score=43.79 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhccCc---hhhHHHHhcCchHHHHHHhcCCc-------H--HHHHHHHHHHhcCCCCCchhhccCC
Q 008437 277 SYAQEIGAMALFNLAVNNN---RNKELMLAAGVIPLLEKMISNSN-------S--HGAATALYLNLSFLDDAKPIIGSSH 344 (565)
Q Consensus 277 ~~~q~~A~~aL~nLa~~~~---~nk~~i~~~G~i~~Lv~lL~s~~-------~--~~~A~aaL~nLs~~~~~k~~I~~~g 344 (565)
.+-|-.|+.....+.+.++ .||+.+.++=+++.+-++|.+++ . ...++++|.-.+..++....----.
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~ 104 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS 104 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH
Confidence 3445555555556655433 46888999988999999997532 1 2335666666665554321111124
Q ss_pred chHHHHHHhcCCCCHH------HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC-CCChHHHHHHHHHHHHHhc--
Q 008437 345 AVPFLVELCKGKTEHQ------CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAA-- 415 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~------~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~-~~~~~~~e~al~~L~nLa~-- 415 (565)
.||.|..++..+.+++ ...++-.+|+.++..+.....++..|+++.+-++-. .+..--.+.++.+|..+..
T Consensus 105 ~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~ 184 (698)
T KOG2611|consen 105 RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKL 184 (698)
T ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhc
Confidence 7899999998764444 788999999999999999999999999999998422 2222222445555544443
Q ss_pred --CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437 416 --SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 454 (565)
Q Consensus 416 --~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~ 454 (565)
.++.-..+.. .|..+..=+...+...+-..+.+|..
T Consensus 185 ~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~ 222 (698)
T KOG2611|consen 185 DCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSA 222 (698)
T ss_pred ccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2333333322 23333333333344445555555543
No 174
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=1.1 Score=49.83 Aligned_cols=219 Identities=15% Similarity=0.063 Sum_probs=127.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc------chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE------ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~------~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+...++.|+.. ..++|..|++.+.-+.+..+- ....+. ..++..+...+.+ ....++..|+.+|..+.
T Consensus 236 Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D----~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 236 YSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRD----RSLSVRVEAAKALGEFE 309 (823)
T ss_pred HHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhc----CceeeeehHHHHhchHH
Confidence 56677777776 778888888887777654310 111111 1223333444433 34456666666666553
Q ss_pred ccCchhhHHHHhcCchHHHHHHhcCCcH-HHHHHHHHHHh--cC------------CCCCchhhccCCchHHHHHHhcCC
Q 008437 292 VNNNRNKELMLAAGVIPLLEKMISNSNS-HGAATALYLNL--SF------------LDDAKPIIGSSHAVPFLVELCKGK 356 (565)
Q Consensus 292 ~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-~~~A~aaL~nL--s~------------~~~~k~~I~~~g~i~~Lv~lL~~~ 356 (565)
.-+++ ++..-.=..+..-|+...+ .+.....+.+. |. .++....|..+|+-.++|.-|+++
T Consensus 310 ~vSee----~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE 385 (823)
T KOG2259|consen 310 QVSEE----IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE 385 (823)
T ss_pred HhHHH----HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH
Confidence 21111 1110000111111111111 11122223222 10 122334566688888999999887
Q ss_pred CCHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHH
Q 008437 357 TEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLAT 435 (565)
Q Consensus 357 ~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~ 435 (565)
-.+++++|...++.|+.+.. -... ++.-|++++++....++..|+.+|..++.+-.-++. -++.+..
T Consensus 386 -f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~ee------ql~~il~ 453 (823)
T KOG2259|consen 386 -FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREE------QLRQILE 453 (823)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHH------HHHHHHH
Confidence 77899999999999987543 3222 567799999888889999999999999887444443 3456777
Q ss_pred HhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 436 VLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 436 lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
.|...++.+++..-..|.+ |+-+
T Consensus 454 ~L~D~s~dvRe~l~elL~~-~~~~ 476 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKN-ARVS 476 (823)
T ss_pred HHHhcCHHHHHHHHHHHHh-cCCC
Confidence 7888888888866665543 4443
No 175
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.13 E-value=0.027 Score=44.86 Aligned_cols=47 Identities=23% Similarity=0.712 Sum_probs=23.0
Q ss_pred cccccccccccC-C---ceec----CCCcccchHHHHHHHhc--CC--------CCCCCCCCCCC
Q 008437 72 ELRCPISLQLMY-D---PVII----ASGQTYERICIEKWLSD--GH--------STCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~-d---PV~~----~~g~ty~r~~I~~~~~~--~~--------~~cP~t~~~l~ 118 (565)
+..|+||...+. + |+++ .||++|=..|+.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999997654 2 5554 48999999999999973 21 24999988764
No 176
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=5.3 Score=45.49 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=46.1
Q ss_pred cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcC
Q 008437 258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 332 (565)
Q Consensus 258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~ 332 (565)
..+...+..+|.++..+....+.-.|+.++.+|.. .+-..+.- ++..|--+|+++.. +-.|..+|-.++.
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~---~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN---TNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc---cCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44566677777766555677788888888888853 23333322 67778788888754 4457777766664
No 177
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.022 Score=55.93 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=42.1
Q ss_pred CcccccccccccCCce----------ecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCc
Q 008437 71 EELRCPISLQLMYDPV----------IIASGQTYERICIEKWLSDG-HSTCPKTQQKLPHLCLT 123 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV----------~~~~g~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~ 123 (565)
++=.|-||++-+.+-| .++|+|.|---||.-|.--| .+|||.|++.++...+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 4567999998877776 67999999999999997644 68999998876543333
No 178
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=2.2 Score=48.27 Aligned_cols=275 Identities=13% Similarity=0.131 Sum_probs=160.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc--
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV-- 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~-- 292 (565)
+.+..++.....+....++..++++|..++.+- +-...... +.++-.++.-... ...+..++..|..+|.|--.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHH
Confidence 345566666666534458889999999998542 22233323 5556666654443 22567788889998887321
Q ss_pred ----cCchhhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCC-CC-CchhhccCCchHHHHHHhcCCCCHHHHHH
Q 008437 293 ----NNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DD-AKPIIGSSHAVPFLVELCKGKTEHQCKLD 364 (565)
Q Consensus 293 ----~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~-~~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~ 364 (565)
.++.+|..| +...++.-.+++.+ ..|...|..+... .+ ....+. ...+..-+.-+++. +.++...
T Consensus 206 ~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl~amks~-~deValQ 278 (859)
T KOG1241|consen 206 KANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITLAAMKSD-NDEVALQ 278 (859)
T ss_pred HHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHH
Confidence 122223332 33344444555443 3345555544332 11 112222 12223333445666 7777777
Q ss_pred HHHHHHHhccCC-----------------CChHHHHH--cCchHHHhhcc-CCC------ChHHHHHHHHHHHHHhcCcc
Q 008437 365 ALHALYNLSTIP-----------------SNIPNLLS--AGIISGLQSLA-VPG------DPMWTEKSLAVLLNLAASAA 418 (565)
Q Consensus 365 Al~aL~nLs~~~-----------------~nk~~iv~--~G~v~~Lv~Ll-~~~------~~~~~e~al~~L~nLa~~~~ 418 (565)
++.-=.++|..+ .++..+.. .+++|.|+++| +.+ +-.....|-..|..++.+-
T Consensus 279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~- 357 (859)
T KOG1241|consen 279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV- 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-
Confidence 777666666311 11222222 37888899954 311 1222344444444444321
Q ss_pred cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 419 ~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
...|+.+ +++-+=+-+.+.+-+.++.|+.++..+-.+....+..-+..+++|.++.++.+.+--+|+-+++.|-.+.
T Consensus 358 -~D~Iv~~--Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 358 -GDDIVPH--VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred -cccchhh--hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 1234443 4444444666778889999999999988877766666677789999999999989999999999999988
Q ss_pred hhcccC
Q 008437 499 EQRQRD 504 (565)
Q Consensus 499 ~~r~~~ 504 (565)
+.-...
T Consensus 435 d~l~e~ 440 (859)
T KOG1241|consen 435 DFLPEA 440 (859)
T ss_pred hhchhh
Confidence 775533
No 179
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.71 Score=51.26 Aligned_cols=211 Identities=11% Similarity=0.074 Sum_probs=117.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc-----
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN----- 295 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~----- 295 (565)
+....... +..++..|++.|-.|.. .-..- .-.....+..+++ .+..++..|++++.-.+...+
T Consensus 203 l~~~~~~~-D~~Vrt~A~eglL~L~e-g~kL~-----~~~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 203 LIYLEHDQ-DFRVRTHAVEGLLALSE-GFKLS-----KACYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHhcCC-CcchHHHHHHHHHhhcc-ccccc-----HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 33333444 78888889988888764 21111 1124566777776 567788888777665542211
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-----CCHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-----TEHQCKLDALHA 368 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-----~~~~~~~~Al~a 368 (565)
++-..=....++..+.+.+...+ .+..|+.+|..+-... . +.|-+.|+.. -........-..
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--------e---e~i~QTLdKKlms~lRRkr~ahkrpk~ 340 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS--------E---EIIQQTLDKKLMSRLRRKRTAHKRPKA 340 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH--------H---HHHHHHHHHHHhhhhhhhhhcccchHH
Confidence 11111111235566666665543 2333444443221110 0 1111111110 000111111112
Q ss_pred HH-Hh--c------------cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHH
Q 008437 369 LY-NL--S------------TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 433 (565)
Q Consensus 369 L~-nL--s------------~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~L 433 (565)
|+ +. + ..++.-..++..|+--++|.=+.+.-.++++.|+..|..|+.+..+-. . .++.-|
T Consensus 341 l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA---~--~aldfL 415 (823)
T KOG2259|consen 341 LYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA---V--RALDFL 415 (823)
T ss_pred HHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH---H--HHHHHH
Confidence 22 22 0 012234457788888889986666677899999999999998543322 1 357788
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 434 ATVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 434 v~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
+.++.+.-..++..|+-+|..|+.+
T Consensus 416 vDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 416 VDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999888899999999999988865
No 180
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.84 E-value=2.8 Score=48.08 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=44.1
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
+++++.+++.++ ++.+++.|+-|+..|=.- .+....+.|.+..+..|+.+.++.+...|+.+|..+..
T Consensus 128 ~~~~ik~~l~d~-~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 128 IIDPIKKLLTDP-HAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHccCC-cHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 556677777766 677777777777666432 23444556666666666666677777777777766654
No 181
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.077 Score=54.76 Aligned_cols=56 Identities=30% Similarity=0.443 Sum_probs=49.8
Q ss_pred CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
.+| ...|.+++..|.|||-+..|..||-..|-.|+.. +.+=|.|++++...+|++-
T Consensus 37 rLP-~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 37 RLP-FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL 92 (518)
T ss_pred cCC-hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence 345 5679999999999999999999999999999996 6788999999998888774
No 182
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.79 E-value=6.1 Score=42.65 Aligned_cols=193 Identities=19% Similarity=0.122 Sum_probs=112.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHh-cccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL-ESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+.+..++....+..++..+..+++.+..++..-...- .-..++..+...+ ...........-+..+|+...|...+
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4566777776666578888889999988885411100 0012223333322 11111112223333344444443322
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCC-CCC--------chhhcc----CCchHHHHHHhcCCCCHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL-DDA--------KPIIGS----SHAVPFLVELCKGKTEHQC 361 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~-~~~--------k~~I~~----~g~i~~Lv~lL~~~~~~~~ 361 (565)
+..- ...+..|+.+|.++.....|+..+.-|..+ ++. -..+.. ...+|.|++-.+.. +...
T Consensus 266 ~~~~-----~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~ 339 (415)
T PF12460_consen 266 HPLA-----TELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEI 339 (415)
T ss_pred CchH-----HHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chhh
Confidence 2111 124677888888866566666666666554 321 111111 24678888888776 5568
Q ss_pred HHHHHHHHHHhccCCCChHHHHH-cCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437 362 KLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 362 ~~~Al~aL~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~ 417 (565)
+.+-+.||.+|..+-.....+-+ ...+|.|++-+.-.+..++..++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88899999999875553333333 458888888666677888999999999888755
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.70 E-value=0.055 Score=56.94 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=35.8
Q ss_pred cccccccccccCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
-=+||+|++=|.+-| ++.|.|+|--.|+.+|+.. +||+|+--.
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q 221 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQ 221 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhc
Confidence 348999999999887 4579999999999999864 688887443
No 184
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.062 Score=55.91 Aligned_cols=60 Identities=27% Similarity=0.559 Sum_probs=45.7
Q ss_pred ccccccccccCCce-----ecCCCcccchHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437 73 LRCPISLQLMYDPV-----IIASGQTYERICIEKWLSD-GHSTCPKTQQKLPHLCLTPNYCVKGLI 132 (565)
Q Consensus 73 f~CpI~~~~m~dPV-----~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~~~l~pn~~l~~~i 132 (565)
-+||||++-..=|+ ++.|||-|--.||++|+.+ -...||.|...-...++.|-+.+|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 47999998887776 5679999999999999952 134599997665556677766665543
No 185
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=1.1 Score=50.64 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=129.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.-++.+++..... +.+.+.-.-.-|.+.++..++. ++..+-.++.+ ..++++.++..|++.+.-+-. +
T Consensus 49 slF~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~--------a~~avnt~~kD-~~d~np~iR~lAlrtm~~l~v--~ 116 (734)
T KOG1061|consen 49 SLFPDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDL--------AILAVNTFLKD-CEDPNPLIRALALRTMGCLRV--D 116 (734)
T ss_pred hhhHHHHhhcccC-CchHHHHHHHHHHHhhccCchH--------HHhhhhhhhcc-CCCCCHHHHHHHhhceeeEee--h
Confidence 5667788888776 6666655555666666554421 12222233333 344788888888777766542 2
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
..... .+.+|.+.++....-....+++.--...+.........|.++.|-.++.+. ++.+..+|+.+|..+...
T Consensus 117 ~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 117 KITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHh
Confidence 12222 366788888877654443333333334455566777789999999999977 899999999999999865
Q ss_pred CCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc---Ccc-cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 376 PSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA---SAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~---~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
+.+... ....+.++. ++...+......-+.+|.+|+. .+. .... .+..+...|......+.-.++.
T Consensus 191 ~~~~~~---~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~------i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 191 HPSVNL---LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAED------ICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred CCCCCc---ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHH------HHHHhhhhhccCCcceEeehHH
Confidence 543100 112222222 2222222222233344444443 222 1112 2333444455555556666666
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCC
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS 483 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s 483 (565)
+++.+...-.. .....-..+.++|+.++....
T Consensus 262 v~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 262 VILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 66665543332 122222344455555554443
No 186
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.34 E-value=0.46 Score=45.66 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=63.8
Q ss_pred CchHHHHHHhcCC-----CCHHHHHHHHHHHHHhccCCCChHHHHHc--Cc--hHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 344 HAVPFLVELCKGK-----TEHQCKLDALHALYNLSTIPSNIPNLLSA--GI--ISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 344 g~i~~Lv~lL~~~-----~~~~~~~~Al~aL~nLs~~~~nk~~iv~~--G~--v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
..+..|++++-.| ....-....+.+|.||+..++.|..+++. +. +..|+.++...+..-+.-++++|.|+|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 4566666666542 13345678889999999999999999873 44 777777776667777788999999999
Q ss_pred cCcccHHHHhcC
Q 008437 415 ASAAGKEEMNST 426 (565)
Q Consensus 415 ~~~~~r~~i~~~ 426 (565)
...+....+...
T Consensus 132 Fd~~~H~~LL~~ 143 (192)
T PF04063_consen 132 FDTDSHEWLLSD 143 (192)
T ss_pred ccHhHHHHhcCc
Confidence 998888877764
No 187
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=2 Score=48.57 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.+..+...|.+. ++.+|..|+-.+.++-. .........|+++.|-.++.+ .++.+..+|+.+|..+...+
T Consensus 122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCC-ChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhC
Confidence 456788888887 89999888888877743 345566779999999999986 68899999999999986443
No 188
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.28 E-value=0.42 Score=46.97 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHhcCCC------CHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCcH
Q 008437 401 MWTEKSLAVLLNLAASAAGKEEMNSTPG------LVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVI 472 (565)
Q Consensus 401 ~~~e~al~~L~nLa~~~~~r~~i~~~~g------~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~v 472 (565)
.-+..|+.+|..|+-.+.|..-++.++. .+..|+++|. ++++..+|.|+.+|.+||..++..+ ....+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4468999999999999999998877632 3444555554 3688999999999999999988665 455577999
Q ss_pred HHHHHhhhcCChhHH
Q 008437 473 PALVSISVNGSTRGR 487 (565)
Q Consensus 473 ~~Lv~L~~~~s~~~k 487 (565)
..|+..+......++
T Consensus 219 ~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998876654443
No 189
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=17 Score=41.19 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=34.9
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh-cCChhHHHHHHHHHHHHHhhc
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~~r 501 (565)
++..|.++|.......+--|+..+..||.... ....+... ...++..+. ..+..+|++|..+|..|.+..
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 34444444444444445555555544444322 11222221 333444444 566677788888887776543
No 190
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=3.6 Score=48.80 Aligned_cols=212 Identities=16% Similarity=0.185 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhc--CchHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhccCCchHH
Q 008437 275 RNSYAQEIGAMALFNLAVNNNRNKELMLAA--GVIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGSSHAVPF 348 (565)
Q Consensus 275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~--G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~ 348 (565)
.+..+|..+..+|..++.. +.......+. .+...|...+++.. .+..+..+|..|-.. .+....+. ..|+-
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~E 742 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPE 742 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHH
Confidence 4678999999999888753 3222222211 12233333333322 122233333332211 12222222 24444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcC------chHHHhhccCCC---C-hHHHHHHHHHHHHHhcCcc
Q 008437 349 LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG------IISGLQSLAVPG---D-PMWTEKSLAVLLNLAASAA 418 (565)
Q Consensus 349 Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G------~v~~Lv~Ll~~~---~-~~~~e~al~~L~nLa~~~~ 418 (565)
++=.++.. +...++.|..+|+.++. .....+.| +|...+.++..+ + .......+-++..+..
T Consensus 743 vIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--- 814 (1176)
T KOG1248|consen 743 VILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--- 814 (1176)
T ss_pred HHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---
Confidence 44445555 88899999999999872 11111122 333333322221 1 1211111233333332
Q ss_pred cHHHHhcC---CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437 419 GKEEMNST---PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 419 ~r~~i~~~---~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~ 495 (565)
....+++. .+.+..+.-.|...++.+...|++.+-.++..-++.+-.-..+-++|.+..++.+.+...|.+...+|.
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11222222 134444555566789999999999999888766543333333457888888888888888888777766
Q ss_pred HH
Q 008437 496 LF 497 (565)
Q Consensus 496 ~L 497 (565)
.|
T Consensus 895 kL 896 (1176)
T KOG1248|consen 895 KL 896 (1176)
T ss_pred HH
Confidence 54
No 191
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.14 E-value=0.29 Score=53.77 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=98.7
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH---HHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP---NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~---~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~ 421 (565)
.+..++.+|++. .+.++..|+.....|+..-.++. .+...|.| |.+-+....+++.-..+.++..+.+...-+.
T Consensus 605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 556777888988 88899999988887764333222 23334443 5555566677777777777776665433222
Q ss_pred HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
.---..|.+|.|.-+|++...++.++.+..+..||.++++....-.=--+---|++++.+-+...|+.|...+-.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 11112388999999999999999999999999999988753211000011223566777777888888876554433
No 192
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=17 Score=41.68 Aligned_cols=253 Identities=12% Similarity=0.092 Sum_probs=131.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch------
Q 008437 223 NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR------ 296 (565)
Q Consensus 223 ~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~------ 296 (565)
.-|.+. +.-++.-|+.+|.+++. ++....+ .|.+.++|.+ .++-++..|+.++..+-.-.++
T Consensus 114 nDL~s~-nq~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~----~~~~irKKA~Lca~r~irK~P~l~e~f~ 181 (866)
T KOG1062|consen 114 NDLNSS-NQYVVGLALCALGNICS--PEMARDL-----APEVERLLQH----RDPYIRKKAALCAVRFIRKVPDLVEHFV 181 (866)
T ss_pred hhccCC-CeeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCchHHHHhh
Confidence 444554 66666777777777762 3332222 4555566665 5677777777666554322221
Q ss_pred --hhHHHHh--cC----chHHHHHHhcCCc-H-------HHHHHHHHHHhcCCCCCchhhccCC----c----hHHHHHH
Q 008437 297 --NKELMLA--AG----VIPLLEKMISNSN-S-------HGAATALYLNLSFLDDAKPIIGSSH----A----VPFLVEL 352 (565)
Q Consensus 297 --nk~~i~~--~G----~i~~Lv~lL~s~~-~-------~~~A~aaL~nLs~~~~~k~~I~~~g----~----i~~Lv~l 352 (565)
.+..+.+ .| ++..+.+++..+. . ...-+.+|.++....-..+.=. .| + |-.|+++
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv-~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV-HGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc-cCCCchHHHHHHHHHHHH
Confidence 2333332 24 3455555554321 1 1224556666654321111110 11 1 1234556
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCC---ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC---
Q 008437 353 CKGKTEHQCKLDALHALYNLSTIPS---NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST--- 426 (565)
Q Consensus 353 L~~~~~~~~~~~Al~aL~nLs~~~~---nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~--- 426 (565)
|..+ +.++.+.-..+|..++.+-+ |...++=-.+|..+..+. .+..+++.|+.+|...-.+.++-...+.-
T Consensus 261 LGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L 337 (866)
T KOG1062|consen 261 LGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNML 337 (866)
T ss_pred hcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhH
Confidence 6677 77777777777877775433 555554444555555553 34456677777777666544433222111
Q ss_pred -------CCC----HHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHH-HHHHH
Q 008437 427 -------PGL----VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDK-AQRLL 494 (565)
Q Consensus 427 -------~g~----v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~-A~~lL 494 (565)
+.+ =..+++.|++.+..++..|+..++.|...+- ...+ +..|+..+...++..|.. |.++.
T Consensus 338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~m-----v~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--VRVM-----VKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHHH-----HHHHHHHHHhccHHHHHHHHHHHH
Confidence 000 1245566777777788888887777776442 2222 344566666666666643 33444
Q ss_pred HHHH
Q 008437 495 MLFR 498 (565)
Q Consensus 495 ~~L~ 498 (565)
..-.
T Consensus 411 ~laE 414 (866)
T KOG1062|consen 411 ELAE 414 (866)
T ss_pred HHHH
Confidence 4333
No 193
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=91.92 E-value=0.15 Score=49.27 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=45.3
Q ss_pred cccccccccccCCceec-CCCcccchHHHHHHHh-cCCCCCCC--CCCCCCCCCCcccHHHHHH
Q 008437 72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPK--TQQKLPHLCLTPNYCVKGL 131 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~-~~~~~cP~--t~~~l~~~~l~pn~~l~~~ 131 (565)
+.+|||+.+...-|++. .|.|-|||..|.+.+. +....||. |.+.+.-..++-++.|.+.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R 252 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKR 252 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHH
Confidence 36899999999999865 5999999999999997 23455887 6666665666655555443
No 194
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.66 E-value=4.1 Score=41.76 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhh-hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCch
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFT-GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVI 307 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i 307 (565)
+.-.+.-|+..+.+++- ..+.|..+ ++.-.-..++.+|++.. ++.++|-+.+.+++-|+. +....+.|-+ .+.|
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli 237 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 44567777788888773 44555544 34556677788887644 567899999999999985 3444433332 2567
Q ss_pred HHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhc---cCCchHHHHHHhcCC--CCHHHHHHHHHH-----------
Q 008437 308 PLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIG---SSHAVPFLVELCKGK--TEHQCKLDALHA----------- 368 (565)
Q Consensus 308 ~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~---~~g~i~~Lv~lL~~~--~~~~~~~~Al~a----------- 368 (565)
..|+.+.+.... -..+++++.|+.. ..-|..|. -.|-+.+-|++|..+ .+.+.+.+.-.+
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 777777765422 1337888888754 22233333 245566667777543 233322221110
Q ss_pred ------HHHh-------cc-------CCCChHHHHHc--CchHHHhhccCCCChH-HHHHHHHHHHHHhc-CcccHHHHh
Q 008437 369 ------LYNL-------ST-------IPSNIPNLLSA--GIISGLQSLAVPGDPM-WTEKSLAVLLNLAA-SAAGKEEMN 424 (565)
Q Consensus 369 ------L~nL-------s~-------~~~nk~~iv~~--G~v~~Lv~Ll~~~~~~-~~e~al~~L~nLa~-~~~~r~~i~ 424 (565)
+..| |. ...|..++.+. .++..|.+++...++. +...|+.=|..+.. .++++..+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 1111 10 12366666653 4778888877655443 33445554554444 678887777
Q ss_pred cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 008437 425 STPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456 (565)
Q Consensus 425 ~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc 456 (565)
.. |+=+.++.++...+++++-.|+.++..+-
T Consensus 397 Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KY-GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred Hh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 75 99999999999999999999999987653
No 195
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.12 Score=51.69 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=37.2
Q ss_pred cccccc-cccCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 74 RCPISL-QLMYDPVI----IASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 74 ~CpI~~-~~m~dPV~----~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.||+|. .....|=+ -+|||+.|-+|...-|..|...||.|+..|..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 388887 55555542 27999999999999999999999999987653
No 196
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.62 E-value=0.71 Score=39.23 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=54.9
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHH--hCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVL--QEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~--~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..++.++..+.+.+.+++..|+.+|++|+.... ..++ -..++..|..+..+.++.+|..|.-+-++|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 478888888889999999999999999997543 2333 2467888899999999999988877777664
No 197
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=20 Score=40.69 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFL 454 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~ 454 (565)
++....+++ ++..|-+++.+.+..++-.++..+..|++++....++..| ...++..|.+ .+-.++..|+..|+.
T Consensus 321 D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 321 DSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred CCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHH
Confidence 334444443 5666777777777888899999999999988777777765 6777888874 577899999999999
Q ss_pred hhcCC
Q 008437 455 LCNGN 459 (565)
Q Consensus 455 Lc~~~ 459 (565)
+|..+
T Consensus 396 mcD~~ 400 (938)
T KOG1077|consen 396 MCDVS 400 (938)
T ss_pred Hhchh
Confidence 99765
No 198
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.85 E-value=0.56 Score=46.15 Aligned_cols=81 Identities=23% Similarity=0.278 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHcC-------chHHHhhcc-CCCChHHHHHHHHHHHHHhcCcccHH-HHhcCCCCH
Q 008437 360 QCKLDALHALYNLSTIPSNIPNLLSAG-------IISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLV 430 (565)
Q Consensus 360 ~~~~~Al~aL~nLs~~~~nk~~iv~~G-------~v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~r~-~i~~~~g~v 430 (565)
.-+..|+.+|+.||..+.|...++..+ .+..|++++ ..++...+|-|+.+|.+||..++... .+....++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 357899999999999999988887654 344555533 45788899999999999999776555 455556999
Q ss_pred HHHHHHhhcC
Q 008437 431 SGLATVLDTG 440 (565)
Q Consensus 431 ~~Lv~lL~~~ 440 (565)
..|+.+++..
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999753
No 199
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=90.76 E-value=0.28 Score=36.12 Aligned_cols=40 Identities=25% Similarity=0.648 Sum_probs=31.0
Q ss_pred cccccc--ccCCceecCCC-----cccchHHHHHHHhc-CCCCCCCCC
Q 008437 75 CPISLQ--LMYDPVIIASG-----QTYERICIEKWLSD-GHSTCPKTQ 114 (565)
Q Consensus 75 CpI~~~--~m~dPV~~~~g-----~ty~r~~I~~~~~~-~~~~cP~t~ 114 (565)
|-||++ --.+|.+.||. +-+=+.|+++|+.. +..+||+|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 677775 45678888875 56889999999975 467899985
No 200
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.75 E-value=0.9 Score=38.58 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-CCCHHHHHHHhhcC
Q 008437 362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDTG 440 (565)
Q Consensus 362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~lL~~~ 440 (565)
++.++.+|...+..-.....-.-.-++++++..+.+.+..++..|+.+|.|++... +..++.+ ......|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 45566777776643333322222458888999888999999999999999998754 3444332 25666777777777
Q ss_pred CHHHHHHHHHHHHHh
Q 008437 441 ELIEQEQAVSCLFLL 455 (565)
Q Consensus 441 s~~~~e~Av~~L~~L 455 (565)
++.++..| ..|-+|
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 77776655 555444
No 201
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.67 E-value=1.2 Score=44.75 Aligned_cols=84 Identities=10% Similarity=0.042 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHH
Q 008437 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEK 312 (565)
Q Consensus 233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~ 312 (565)
....|+..|.-++--++..|..+.....+..|+.+|... ..+.+|..++.+|..+-..++.|.+.+.+.+|+..++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 355677888888878889999999999999999999542 56889999999999888888999999999999999999
Q ss_pred HhcCCcH
Q 008437 313 MISNSNS 319 (565)
Q Consensus 313 lL~s~~~ 319 (565)
++++..+
T Consensus 184 llk~~~~ 190 (257)
T PF08045_consen 184 LLKSKST 190 (257)
T ss_pred HHccccc
Confidence 9987643
No 202
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=19 Score=42.56 Aligned_cols=247 Identities=16% Similarity=0.138 Sum_probs=131.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..|+..|++. +..++..|++.+..++...+ ..++ ..+|...+.++.-. ++...=..|+.+|..||...
T Consensus 341 ~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp---~~La-d~vi~svid~~~p~---e~~~aWHgacLaLAELA~rG- 411 (1133)
T KOG1943|consen 341 FVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP---PELA-DQVIGSVIDLFNPA---EDDSAWHGACLALAELALRG- 411 (1133)
T ss_pred HHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc---HHHH-HHHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhcC-
Confidence 3445566677776 88999999999999998776 2222 33466666655432 33455567788888877421
Q ss_pred hhhHHHH-hcCchHHHHHHhcC---------C-cHHHHHHHHHHHhcCCCCC---chhhccCCchH-HHHHHhcCCCCHH
Q 008437 296 RNKELML-AAGVIPLLEKMISN---------S-NSHGAATALYLNLSFLDDA---KPIIGSSHAVP-FLVELCKGKTEHQ 360 (565)
Q Consensus 296 ~nk~~i~-~~G~i~~Lv~lL~s---------~-~~~~~A~aaL~nLs~~~~~---k~~I~~~g~i~-~Lv~lL~~~~~~~ 360 (565)
-...- =..++|.++.-|.- | ..+..|+-+.+.++...+- +..+ ....+ .|...+-+. +..
T Consensus 412 --lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDr-evn 486 (1133)
T KOG1943|consen 412 --LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDR-EVN 486 (1133)
T ss_pred --CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCc-hhh
Confidence 11110 12467777766632 2 2345566666666543221 1111 01111 222334455 678
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHH-HHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc
Q 008437 361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSL-AVLLNLAASAAGKEEMNSTPGLVSGLATVLDT 439 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al-~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~ 439 (565)
++.+|..||.....-..|... +++.+. ..+--....+.+|- .+=.-++..+..++-++++ .+.+-+..
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~-----Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~H 555 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPH-----GISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCH 555 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCC-----chhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhccccc
Confidence 999999999888765444421 111111 11000011111211 1112233333333333332 11111223
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHH
Q 008437 440 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ 491 (565)
Q Consensus 440 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~ 491 (565)
=+...+|.|+.+|..|+...++ -...+++|.|++-....+...+.-+.
T Consensus 556 Wd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhH
Confidence 4889999999999998876653 44567888888766666555554433
No 203
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.19 E-value=0.18 Score=50.80 Aligned_cols=43 Identities=23% Similarity=0.510 Sum_probs=36.8
Q ss_pred cccccccccccCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 008437 72 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ 114 (565)
Q Consensus 72 ~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~t~ 114 (565)
-|+||+..+.-.| ||.++|||...+.++..--+.|. ..||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4899999988776 89999999999999998877774 5699984
No 204
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.11 E-value=5 Score=46.13 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=32.9
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
.+..+.+.+...++.++..|+-++..+-+-+.. .+.++|.+..+..|+.+.++.+..+|...|..+.
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 344444455555555555555555555444432 3334455555555555555555555555544443
No 205
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.92 E-value=7.8 Score=45.14 Aligned_cols=223 Identities=15% Similarity=0.111 Sum_probs=122.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHH----HHHHhhc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAM----ALFNLAV 292 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~----aL~nLa~ 292 (565)
.+..+++.|... +.++|.-|++.|.-|++.-.+.+ ++.++.-|-+..-++....+..+.- .+.|+.-
T Consensus 48 vv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~--------le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 48 VVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQ--------LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHH--------HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 456778888877 89999999999999986543333 3334433322111122222222222 2333431
Q ss_pred cCchhhHHHHhcCchHHHHHHhcCCcH--------HHHHHHHHHHh-cCCCCCchhhc--cCCchHHHHHHhcCCCCHHH
Q 008437 293 NNNRNKELMLAAGVIPLLEKMISNSNS--------HGAATALYLNL-SFLDDAKPIIG--SSHAVPFLVELCKGKTEHQC 361 (565)
Q Consensus 293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--------~~~A~aaL~nL-s~~~~~k~~I~--~~g~i~~Lv~lL~~~~~~~~ 361 (565)
+ ........+++.+...|..... +..++-++..+ +.. -..+. ..+.+..++.-|.+. ...+
T Consensus 119 ~----~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~---g~ll~~fh~~il~~l~~ql~s~-R~aV 190 (1233)
T KOG1824|consen 119 S----SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF---GTLLPNFHLSILKCLLPQLQSP-RLAV 190 (1233)
T ss_pred c----cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh---cccCcchHHHHHHHHhhcccCh-HHHH
Confidence 1 1111223344455444443211 11122222111 100 01111 134455555556666 6778
Q ss_pred HHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh---
Q 008437 362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL--- 437 (565)
Q Consensus 362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL--- 437 (565)
++.|+.+|..|+..-. ..+-.++++.|++ |-....+........+|..+|.....|--- ..+..++.++++.
T Consensus 191 rKkai~~l~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~-h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 191 RKKAITALGHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS-HLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc-ccchhhHHHHHHhccc
Confidence 9999999999986432 2233457778888 655556666666667777777644333221 2235778888887
Q ss_pred hcCCHHHHHHHHHHHHHhhcCCh
Q 008437 438 DTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 438 ~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
...+++.+|.++.+|..+-.+.+
T Consensus 267 e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhCh
Confidence 55788999999999877665443
No 206
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=6.9 Score=44.46 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccccc-------------CCCHHHHHHHHHHHHHhhccCch
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-------------ERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~-------------s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
+...|..-++.|+..+..++.-+ .-.|..+..+|.+..+ +.++.+...|+.++..|.....+
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 45667777777777775544333 2346677777765311 12455555555555555443333
Q ss_pred hhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCC-CCc-h------hhccCCchHHHHHHhcCC---------
Q 008437 297 NKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLD-DAK-P------IIGSSHAVPFLVELCKGK--------- 356 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~-~~k-~------~I~~~g~i~~Lv~lL~~~--------- 356 (565)
|...++- +..|..+ +..+ -++.++-+|.-|+.-+ +.+ . -+..+.-+..++.+|+..
T Consensus 294 nnvklIv---ldrl~~l-~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~ 369 (948)
T KOG1058|consen 294 NNVKLIV---LDRLSEL-KALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEES 369 (948)
T ss_pred cchhhhh---HHHHHHH-hhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccccc
Confidence 3222111 1111111 1110 1222444444443321 111 0 112234445555555411
Q ss_pred -CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHH
Q 008437 357 -TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLA 434 (565)
Q Consensus 357 -~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv 434 (565)
.+.+-+..-+++|...+..-. =+.+.+|+.|++.+.+.++......+..+..... .+.-|..|++ .|+
T Consensus 370 d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~ 439 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE------KLL 439 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHH
Confidence 122345555666666554221 1234577888886655555433333333332211 3334444433 233
Q ss_pred HHhhc-CCHHHHHHHHHHHHHhhcCCh
Q 008437 435 TVLDT-GELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 435 ~lL~~-~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
+-+.. .+.+.-+.|+|++..-|....
T Consensus 440 ~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HhhhhhcccccchhHHHHHHHHHhhhH
Confidence 33332 466777888999888776554
No 207
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=89.64 E-value=4.7 Score=45.51 Aligned_cols=177 Identities=18% Similarity=0.175 Sum_probs=113.7
Q ss_pred chHHHHHHhcCCcHHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437 306 VIPLLEKMISNSNSHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS 384 (565)
Q Consensus 306 ~i~~Lv~lL~s~~~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~ 384 (565)
.+|.|..+++.....+.-+.++.++... +.....-....++|.|..-+++. +..+++.++..+-.++..-+ ...++
T Consensus 350 ~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk 426 (700)
T KOG2137|consen 350 MLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVK 426 (700)
T ss_pred hhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHH
Confidence 4566666665433333333333333211 11111112235667777777777 89999999999998886544 55666
Q ss_pred cCchHHHhhc-cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHH
Q 008437 385 AGIISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC 463 (565)
Q Consensus 385 ~G~v~~Lv~L-l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~ 463 (565)
.-++|.|-.+ +...+..++-.++.+|..|.. .-.+..+++. +..+.+-+...++...-..+.+..++......-
T Consensus 427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~~~v~d~---~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g- 501 (700)
T KOG2137|consen 427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDKAAVLDE---LLPILKCIKTRDPAIVMGFLRIYEALALIIYSG- 501 (700)
T ss_pred HHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHHHHhHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence 7788888884 566778888899999998882 3334444432 444555555678888888888887776544321
Q ss_pred HHHHhCCcHHHHHHhhhcCChhHHHHH
Q 008437 464 QMVLQEGVIPALVSISVNGSTRGRDKA 490 (565)
Q Consensus 464 ~~v~~~G~v~~Lv~L~~~~s~~~k~~A 490 (565)
+.++.+.++|.++-|...+.-.....+
T Consensus 502 ~ev~~~~VlPlli~ls~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 502 VEVMAENVLPLLIPLSVAPSLNGEQYN 528 (700)
T ss_pred eeeehhhhhhhhhhhhhcccccHHHHH
Confidence 567778999999998888765544443
No 208
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.63 E-value=3.1 Score=40.58 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCCCCchhhccCCchHHHHHHh---cC-CCCHHHHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhhc
Q 008437 321 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELC---KG-KTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSL 394 (565)
Q Consensus 321 ~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL---~~-~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~L 394 (565)
-+|..+|.-++.+++.|..+.+..+--.|...| .+ ..-.-.+..++++|..|..+++ ....+....+||.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 446777777888888887777654332333333 22 2233467778888888887664 55667778999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-------CCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437 395 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-------PGLVSGLATV-LDTGELIEQEQAVSCLFLLCNGNEKCCQMV 466 (565)
Q Consensus 395 l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-------~g~v~~Lv~l-L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 466 (565)
++.++...+..|+-++..+-.++.|-.-+..+ ..++..++.- ...++.+...+++++-..||.... .++.+
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~-aR~lL 276 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH-ARALL 276 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh-HHHHH
Confidence 98887777777888887777766665544222 1233334433 344788899999999999998765 33333
Q ss_pred Hh---CCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 467 LQ---EGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 467 ~~---~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
.. +|....-..+.-.++...|++-+.+|-.++
T Consensus 277 ~~~lP~~Lrd~tfs~vl~dD~~sk~ClAqll~~ln 311 (315)
T COG5209 277 SSKLPDGLRDDTFSLVLADDGGSKECLAQLLTFLN 311 (315)
T ss_pred hccCCccccccHHHHHHHhcCChHHHHHHHHHHHH
Confidence 22 355444333333344445666666665554
No 209
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.62 E-value=12 Score=38.66 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~ 293 (565)
+.+...+..|... ....|..++..|..+...... -..+.. .-.+..+.+.++. +..+-+..|+.++.-|++.
T Consensus 43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhh
Confidence 4567778888776 788999999999999865432 122221 3345666666665 3334455565554444433
Q ss_pred --CchhhHHHHhcCchHHHHHHhcCCcH----HHHHHHHHHH---hcCCCCCchhhcc-CCchHHH--HHHhcCC-----
Q 008437 294 --NNRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLN---LSFLDDAKPIIGS-SHAVPFL--VELCKGK----- 356 (565)
Q Consensus 294 --~~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~A~aaL~n---Ls~~~~~k~~I~~-~g~i~~L--v~lL~~~----- 356 (565)
.......+.+ ...|.|..++..+.. +..++.+|.. +...+. ..+.+ ...+..+ ...++.+
T Consensus 117 lg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~--~~~~~~~~~le~if~~~~~~~~~~~~~ 193 (309)
T PF05004_consen 117 LGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE--EETEELMESLESIFLLSILKSDGNAPV 193 (309)
T ss_pred cCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence 2233444443 467888888876532 2222223322 222211 11110 0122211 1122221
Q ss_pred ----CCHHHHHHHHHHHHHhccC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437 357 ----TEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 357 ----~~~~~~~~Al~aL~nLs~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL 413 (565)
.++.+...|+.+-.-|... +.....-.-...++.|+.+|.+.+..++-.|-.+|+.|
T Consensus 194 ~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 194 VAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred ccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1245666676665555433 22222222245789999999988888887776666655
No 210
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.01 E-value=0.095 Score=58.53 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=33.1
Q ss_pred ccccccccccCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
-.||+|..-+.|-.+. .|+|.||.+||..|-.- ..|||+|+..|..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 4577777777776643 48888888888888764 5688888877654
No 211
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.77 E-value=8.3 Score=39.94 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=84.8
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccC---CCChHHHHHcCchHHHhhccCCCC--hHHHHHHHHHHHHHhcC-cc
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTI---PSNIPNLLSAGIISGLQSLAVPGD--PMWTEKSLAVLLNLAAS-AA 418 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~---~~nk~~iv~~G~v~~Lv~Ll~~~~--~~~~e~al~~L~nLa~~-~~ 418 (565)
.+..+.+.++.+ ..+-+..|+.++.-|+.. ......+.+ ...|.|..++.++. ...+..|+.+|..++.. ..
T Consensus 87 L~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 87 LLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred HHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence 567778888888 555666777777777654 234444444 47777888665543 34444555555554431 11
Q ss_pred cHHHHhcCCCCHHHH--HHHhhc-C---------CHHHHHHHHHHHHHhhc-CChHHHHHHHhCCcHHHHHHhhhcCChh
Q 008437 419 GKEEMNSTPGLVSGL--ATVLDT-G---------ELIEQEQAVSCLFLLCN-GNEKCCQMVLQEGVIPALVSISVNGSTR 485 (565)
Q Consensus 419 ~r~~i~~~~g~v~~L--v~lL~~-~---------s~~~~e~Av~~L~~Lc~-~~~~~~~~v~~~G~v~~Lv~L~~~~s~~ 485 (565)
+-..+...-..+..+ ..++.. + ++.+.-.|+.+-.-|.. -+..... -.-+..+|.|+.++.+.+..
T Consensus 165 d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~ 243 (309)
T PF05004_consen 165 DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVD 243 (309)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHH
Confidence 112221100112211 111221 1 12344444443322322 2221122 22245689999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 008437 486 GRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 486 ~k~~A~~lL~~L~~~r~~ 503 (565)
+|-.|...|.+|-+....
T Consensus 244 VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 244 VRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999998776553
No 212
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=22 Score=40.87 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=130.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
..|..+|.+. ....+++|++.|-.+...+.+. ...+|..|+-..+ .+.+++...-.-|...|.. +.+-
T Consensus 38 ~dL~~lLdSn-kd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVas----kn~EVKkLVyvYLlrYAEe-qpdL 105 (968)
T KOG1060|consen 38 DDLKQLLDSN-KDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVAS----KNIEVKKLVYVYLLRYAEE-QPDL 105 (968)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhc----cCHHHHHHHHHHHHHHhhc-CCCc
Confidence 5788888886 6677888888877775555442 3346777877766 6888887776667666632 2221
Q ss_pred HHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCC
Q 008437 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPS 377 (565)
Q Consensus 299 ~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~ 377 (565)
..+ -|..+-+-|..++. ..-+.+|..|+.- |..+...=++-++-+...+. ++-+++.|+.||-.|-+ +.+
T Consensus 106 ALL----SIntfQk~L~DpN~-LiRasALRvlSsI---Rvp~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 106 ALL----SINTFQKALKDPNQ-LIRASALRVLSSI---RVPMIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred eee----eHHHHHhhhcCCcH-HHHHHHHHHHHhc---chhhHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCChh
Confidence 111 14455556665543 2233444444421 22222211222333344455 88899999999998865 444
Q ss_pred ChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 008437 378 NIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456 (565)
Q Consensus 378 nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc 456 (565)
.+..+++ +++ ||.+.++.+.-.|+.+...+|- .|-.++ | +--..|..+|...+++.|-..+..|..-|
T Consensus 177 ~k~qL~e------~I~~LLaD~splVvgsAv~AF~evCP---erldLI-H-knyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 177 QKDQLEE------VIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI-H-KNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred hHHHHHH------HHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh-h-HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 5554443 445 7888888888888888887765 233333 2 45778888888888888888888887766
Q ss_pred c
Q 008437 457 N 457 (565)
Q Consensus 457 ~ 457 (565)
+
T Consensus 246 R 246 (968)
T KOG1060|consen 246 R 246 (968)
T ss_pred H
Confidence 5
No 213
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=0.31 Score=49.80 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=40.3
Q ss_pred CcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
++=+||||.-=--..|..||||.-|..||.+++-. .+.|-.|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 78899999987788889999999999999999974 667888876543
No 214
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=88.35 E-value=29 Score=37.73 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=114.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCc---cchhhhhccCCHHHHHHHhcccccC---CCHHHHHHHHHHHHHhhccC
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDE---EARVFTGANGFVVALLRFLESAVCE---RNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~---~~r~~i~~~G~i~~Lv~lL~s~~~s---~~~~~q~~A~~aL~nLa~~~ 294 (565)
++..+.. .+.+.|..|+-.+..+.|.++ -+|+.+.++-+.+.+=++|.+.... .|......++..|.-++. .
T Consensus 16 ~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~ 93 (698)
T KOG2611|consen 16 CLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V 93 (698)
T ss_pred HHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence 3344443 478889999999999988764 3778888888888888888754222 234455667777777763 3
Q ss_pred chh--hHHHHhcCchHHHHHHhcCC---cH------HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHH
Q 008437 295 NRN--KELMLAAGVIPLLEKMISNS---NS------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKL 363 (565)
Q Consensus 295 ~~n--k~~i~~~G~i~~Lv~lL~s~---~~------~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~ 363 (565)
++. ...|+ +.||.|..++..+ +. .+.+..+|...+.++.....+...|+++.+.++-.-..-.-...
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 332 23333 4699999999764 21 24488889999999888888888999999998754321112233
Q ss_pred HHHHHHHHhc----cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437 364 DALHALYNLS----TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 364 ~Al~aL~nLs----~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL 413 (565)
-|+.++.-+. ..++.-..+... |..+-.=+...+...+-+.+.+|..+
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444333 233333333321 33333312223344556666777643
No 215
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=0.28 Score=50.86 Aligned_cols=46 Identities=26% Similarity=0.585 Sum_probs=34.0
Q ss_pred CcccccccccccCCce------ecCCCcccchHHHHHHHhcC--CCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPV------IIASGQTYERICIEKWLSDG--HSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV------~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 118 (565)
-.-.|.||-+.+ |+ |-.|||+|.--|++.||... +.+||.|+-.+.
T Consensus 3 i~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 3 IMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 345699996655 44 33599999999999999853 358999984443
No 216
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.25 E-value=14 Score=40.71 Aligned_cols=150 Identities=14% Similarity=0.057 Sum_probs=96.2
Q ss_pred HHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC---CHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437 310 LEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLLS 384 (565)
Q Consensus 310 Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~---~~~~~~~Al~aL~nLs~~~~nk~~iv~ 384 (565)
+.+++.+++. +..|.-.|..|+.+......+....++..|..+++++. .......++.++..|-.+.-.-...+.
T Consensus 88 i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~ 167 (713)
T KOG2999|consen 88 IMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVS 167 (713)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecc
Confidence 3455555533 22356666667766665566666788999999999882 235566666666665332222222222
Q ss_pred cCchHHHhhcc--CCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 385 AGIISGLQSLA--VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 385 ~G~v~~Lv~Ll--~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
...|.....+. +..+..+-..|+.+|.++..+.......+...--+..|+..|..++...+..|++.|-.+....
T Consensus 168 ~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 168 NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 23333333322 2234556688999999999987755555544588999999999999999999998887776533
No 217
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=88.19 E-value=22 Score=37.87 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhc---cccc---CCCHHHHHHHHHHHH
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE---SAVC---ERNSYAQEIGAMALF 288 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~---s~~~---s~~~~~q~~A~~aL~ 288 (565)
.+....++..|..+.....+...++.+|.|+++.. .-.-+-..-.+..|+.+-. +... ..+..+...|..+|.
T Consensus 44 ~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLc 122 (532)
T KOG4464|consen 44 KELGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLC 122 (532)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH
Confidence 35567788888877556777888999999986532 1111111122333333322 1111 135578888999999
Q ss_pred HhhccCchhhHHHHhcCchHHHHHHhcCC-------cHHHHHHHHHHHhcCC-CCCchhh-ccCCchHHHHHHhcCC--C
Q 008437 289 NLAVNNNRNKELMLAAGVIPLLEKMISNS-------NSHGAATALYLNLSFL-DDAKPII-GSSHAVPFLVELCKGK--T 357 (565)
Q Consensus 289 nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-------~~~~~A~aaL~nLs~~-~~~k~~I-~~~g~i~~Lv~lL~~~--~ 357 (565)
|+-.++...+....+......+...+... +....-+.+|+-|+.. .+.+..+ ...++++.+.++|.+. .
T Consensus 123 Nlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi 202 (532)
T KOG4464|consen 123 NLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI 202 (532)
T ss_pred HHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence 99888777888888877666666655322 1122356666666554 3455544 4578999999998742 1
Q ss_pred ------C---H---HHHHHHHHHHHHhccCC
Q 008437 358 ------E---H---QCKLDALHALYNLSTIP 376 (565)
Q Consensus 358 ------~---~---~~~~~Al~aL~nLs~~~ 376 (565)
. + .....++.+++|+..+.
T Consensus 203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 203 DSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1 1 24456777888887543
No 218
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.94 E-value=8.6 Score=42.78 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.+..++..|.+. ++.+|.+|+.....|++--.. --..+...|.| |..-| +..++++.--.+.++..+....
T Consensus 605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~l----ge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENL----GEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhc----CcccHHHHHHHHHHHHHHhhhh
Confidence 456778888887 899999999888888642110 01122223322 22333 3356776544455555443211
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-C---CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-D---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~---~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
.-.+.+---.|.+|.|..+|++.+. ..+.++.+..++... + .|+.+. .--.|+++|++- +.+.+.+|..+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~-nKeiRR~A~~t 753 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW-NKEIRRNATET 753 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh-hHHHHHhhhhh
Confidence 1112221235899999999998753 345566665565442 2 122222 335688888887 88999999988
Q ss_pred HHHhcc
Q 008437 369 LYNLST 374 (565)
Q Consensus 369 L~nLs~ 374 (565)
+..++.
T Consensus 754 fG~Is~ 759 (975)
T COG5181 754 FGCISR 759 (975)
T ss_pred hhhHHh
Confidence 877653
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.88 E-value=1.5 Score=35.14 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC-CCChHHHHHHHHHHHHHhcCcccHHHHhcC
Q 008437 362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNST 426 (565)
Q Consensus 362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~-~~~~~~~e~al~~L~nLa~~~~~r~~i~~~ 426 (565)
.+.|++|+.++++.+.....+.+.++|+.++++.. .+...++-.|.-+|..++...++.+.+-+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 68899999999998888877878899999999654 567788899999999999999988877654
No 220
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=87.87 E-value=0.32 Score=36.39 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=33.7
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 121 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 121 (565)
..|=.++..=...++++|||-.++.|-. .+...-||.|+.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCCC
Confidence 3356666666778899999999998833 333456999999986543
No 221
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.16 Score=37.64 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=35.4
Q ss_pred cccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCC
Q 008437 74 RCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
.|-||.+--.|-|+--|||. .|.+|=.+-+..++.+||.|+.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999988888888899986 577776666666788999998764
No 222
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.58 E-value=0.43 Score=34.85 Aligned_cols=42 Identities=21% Similarity=0.514 Sum_probs=21.1
Q ss_pred ccccccccCCce---ec--CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 75 CPISLQLMYDPV---II--ASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 75 CpI~~~~m~dPV---~~--~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
||+|.+.| |.- .. +||.-+||.|..+-...+...||-|+++.
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877 332 33 48999999998777765678899999875
No 223
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.46 E-value=0.12 Score=58.67 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=38.5
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDG-HSTCPKTQQKLPH 119 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 119 (565)
+.|+||.+ ..+||++.|||-||++|+.+.+..- ...||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 8999999999999999999987643 3359999765544
No 224
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=87.44 E-value=6.4 Score=45.89 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=88.7
Q ss_pred hhccCCchHHHHHHhcCCC----CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc----CCCC----hHHHHHH
Q 008437 339 IIGSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA----VPGD----PMWTEKS 406 (565)
Q Consensus 339 ~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll----~~~~----~~~~e~a 406 (565)
.+.+.|++..|+.+|.+-. ........+..|...+....||..+++.|+++.|++.+ ..+. ..+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456789999999887531 34566777888888888899999999999999999943 3333 6777888
Q ss_pred HHHHHHHhcCcccHHHH-----hcC-------CCCHHHHHHHhhc----CCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q 008437 407 LAVLLNLAASAAGKEEM-----NST-------PGLVSGLATVLDT----GELIEQEQAVSCLFLLCNGNEKCCQMVLQ 468 (565)
Q Consensus 407 l~~L~nLa~~~~~r~~i-----~~~-------~g~v~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~ 468 (565)
+.++.-|.........- ... ..-+..|++.+.+ .++.+.+..+++|-.|+.++.+..+.+++
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 88888776633211110 111 1125555555554 36788888899999999888765554443
No 225
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=87.31 E-value=21 Score=39.58 Aligned_cols=244 Identities=11% Similarity=0.047 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhc---C-
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA---G- 305 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~---G- 305 (565)
|+.++..|-..|.++...+ .-. ++..|++.|-+. ..+...+..|..+|.|--..++..+..=... |
T Consensus 18 D~n~rl~aE~ql~~l~~~d--F~q------f~~ll~qvl~d~--ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 18 DPNARLRAEAQLLELQSGD--FEQ------FISLLVQVLCDL--NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCccccHHHHHHHhcccc--HHH------HHHHHHHHHhcc--CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 6777778888888887543 211 234556666442 1356677777777777433333332211110 1
Q ss_pred -------chHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhcc---CCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 306 -------VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 306 -------~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~---~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
+-......|.+++.+ ..|+.++..++.- .+-. .|.+..+++....+.....+..++.++.+.|
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~-----Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM-----ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-----hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 112233445555443 2244455444421 1111 2445555555555534568899999999999
Q ss_pred cCCCChHHHHHc-CchHHHhh-ccCC-CChHHHHHHHHHHHH-Hhc------CcccHHHHhcCCCCHHHHHHHhhcCCHH
Q 008437 374 TIPSNIPNLLSA-GIISGLQS-LAVP-GDPMWTEKSLAVLLN-LAA------SAAGKEEMNSTPGLVSGLATVLDTGELI 443 (565)
Q Consensus 374 ~~~~nk~~iv~~-G~v~~Lv~-Ll~~-~~~~~~e~al~~L~n-La~------~~~~r~~i~~~~g~v~~Lv~lL~~~s~~ 443 (565)
....-...+-.. .++-.++. -+++ .+..++-.++.+|.+ |-. .++.|.-+ .....+.-...+.+
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~------mqvvceatq~~d~e 236 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF------MQVVCEATQGNDEE 236 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh------heeeehhccCCcHH
Confidence 655442222223 34444444 4443 467777888888887 322 12222222 22223333345566
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437 444 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494 (565)
Q Consensus 444 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL 494 (565)
.+..|.++|..|-.-.-...+-.++......+...+.+.+++++-.|.+--
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfW 287 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFW 287 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 666666666655543322333223322222223455555555555555444
No 226
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.15 E-value=1 Score=48.40 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHhccCC----CChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhc-CCCCHH
Q 008437 358 EHQCKLDALHALYNLSTIP----SNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS-TPGLVS 431 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~----~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~-~~g~v~ 431 (565)
...++.+|.++|.|+...- +-.-..+..|.+..++. ....+...++.+++-+|.||-+++.-.-+-.. .+.+.+
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 5578889999999987521 22233344566666666 55567788999999999999997754222111 123456
Q ss_pred HHHHHhhc-CCHHHHHHHHHHHHHhhcCC
Q 008437 432 GLATVLDT-GELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 432 ~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~ 459 (565)
.|..++.. .+-+++-+|+++|..-....
T Consensus 577 ~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 577 ALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred HHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 66666654 57788999999998766543
No 227
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=86.86 E-value=12 Score=42.64 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+..++..|.+. ++.+|.+|+..+..++.--.. --..|+..|.| |...|.. .++++.--.+.+|..+.....
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge----eypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhcc
Confidence 34455666666 889999999999888753211 11234445543 4455544 667765444444444431111
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-C---CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-D---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-~---~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
-.+..==-.|.+|.|..+|++.+. +++.+.++..++... + .|+.+. +--.|+++|+.- +.+.+.+|..++
T Consensus 874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah-kK~iRRaa~nTf 949 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH-KKEIRRAAVNTF 949 (1172)
T ss_pred ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH-HHHHHHHHHhhh
Confidence 111111124789999999998753 566777777776542 2 122222 335678888876 788899998888
Q ss_pred HHhcc
Q 008437 370 YNLST 374 (565)
Q Consensus 370 ~nLs~ 374 (565)
..++.
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 77653
No 228
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.42 Score=49.83 Aligned_cols=48 Identities=21% Similarity=0.475 Sum_probs=39.4
Q ss_pred CcccccccccccCCce-------e-cCCCcccchHHHHHHHhcC------CCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPV-------I-IASGQTYERICIEKWLSDG------HSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV-------~-~~~g~ty~r~~I~~~~~~~------~~~cP~t~~~l~ 118 (565)
.+..|=||++.-.+++ + ..|.|+||-.||.+|-... .+.||.|+.+..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 6899999999999998 3 4599999999999997432 367999986643
No 229
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.72 E-value=17 Score=40.58 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..++..-+ + +..++.=|+..|....+.-++.... +|..++.|..+ +|..++..|+..|-.++.++.
T Consensus 23 ~~y~~il~~~k-g-~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcED----ed~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 23 EDYKEILDGVK-G-SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCED----EDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-----SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHHHHHcc-C-CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc----ccHHHHHHHHHhHHHHHHhHH
Confidence 34455555544 4 6888889999999998887765544 58889999987 789999999999999997654
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhhccCCchHHHHHHhc---CCCCHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GKTEHQCKLDALHALY 370 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~---~~~~~~~~~~Al~aL~ 370 (565)
+....+ ...|+.+|.+.+..+. +-.+|..|-.. -..+.+..|+.-+. ++ +..+++.++..|.
T Consensus 92 ~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~-------d~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~ 158 (556)
T PF05918_consen 92 EHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ-------DPKGTLTGLFSQIESSKSG-DEQVRERALKFLR 158 (556)
T ss_dssp T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred HHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence 444444 5688999988765433 33333333211 11345556665554 45 6778888887775
Q ss_pred H
Q 008437 371 N 371 (565)
Q Consensus 371 n 371 (565)
.
T Consensus 159 ~ 159 (556)
T PF05918_consen 159 E 159 (556)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.72 E-value=20 Score=35.09 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=120.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHh-------cccccCCCH-HHHHHHHHHHHH
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFL-------ESAVCERNS-YAQEIGAMALFN 289 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL-------~s~~~s~~~-~~q~~A~~aL~n 289 (565)
-..+..+-.+ ++.+| |+.+|..--+..++.-..+-. .|....|++-+ +...-++.. .-.-+|+..|.-
T Consensus 50 y~wicqlv~g-~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQc 126 (315)
T COG5209 50 YSWICQLVVG-NPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQC 126 (315)
T ss_pred HHHHHHHhcC-CHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHH
Confidence 3445566666 66666 677776665556654444433 66666666432 211111112 223455666666
Q ss_pred hhccCchhhHHHHhcCchHHHHHHhcCC---cH----HHHHHHHHHHhcCCCCC--chhhccCCchHHHHHHhcCCCCHH
Q 008437 290 LAVNNNRNKELMLAAGVIPLLEKMISNS---NS----HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQ 360 (565)
Q Consensus 290 La~~~~~nk~~i~~~G~i~~Lv~lL~s~---~~----~~~A~aaL~nLs~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~ 360 (565)
++ ++++.|..++++..--.|-.+|... .. +-.+.+++..|..+++. -..+-...++|.++++++.+ +.-
T Consensus 127 la-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g-SEl 204 (315)
T COG5209 127 LA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG-SEL 204 (315)
T ss_pred Hh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh-hHH
Confidence 66 5789999998887544455555432 11 34478888887766442 22233468999999999998 666
Q ss_pred HHHHHHHHHHHhccCCCChHHHHH--------cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 361 CKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~nk~~iv~--------~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
.+.-|+-++..+-.++..-..+.+ ..++..++. +...+...+.+.++.+-..||..+..|+.+
T Consensus 205 SktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 205 SKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 666676666666666554333322 123333444 444567778888888888888888877765
No 231
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.46 E-value=20 Score=41.74 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=114.7
Q ss_pred CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhc-c-CCCChHHHHHHHHHHHHHhcCcccH
Q 008437 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSL-A-VPGDPMWTEKSLAVLLNLAASAAGK 420 (565)
Q Consensus 343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~L-l-~~~~~~~~e~al~~L~nLa~~~~~r 420 (565)
.+++..|.++.... +.++...-+.+|+..+..+.-.....++-+.|..+.+ + .+.++-+...+-.++..|+....+.
T Consensus 529 p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~ 607 (1005)
T KOG2274|consen 529 PMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY 607 (1005)
T ss_pred hHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence 47788888888766 7788888999999999988888888888888988884 3 4467888888888888888866666
Q ss_pred HHHhcCCCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHH-hhhcCChhHHHHHHHHHH
Q 008437 421 EEMNSTPGLVSGLATVLDTGE----LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~-L~~~~s~~~k~~A~~lL~ 495 (565)
.-+.. ..||.|+.+|.... .....-|+.+|..+-++.+.--...+-.-++|++.. .+.+++..+-..|.+.|+
T Consensus 608 g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 608 GPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred cchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 66655 58999999997643 556777778887777755422222233346777765 455677777888889998
Q ss_pred HHHhh
Q 008437 496 LFREQ 500 (565)
Q Consensus 496 ~L~~~ 500 (565)
.+-..
T Consensus 686 a~Is~ 690 (1005)
T KOG2274|consen 686 ALISV 690 (1005)
T ss_pred HHHhc
Confidence 86543
No 232
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.27 E-value=4.1 Score=38.44 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcH-HHHHH
Q 008437 399 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI-PALVS 477 (565)
Q Consensus 399 ~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v-~~Lv~ 477 (565)
++.++..++.+|.-|+..-. .+++ ..++.+...|.+.++.+|..|+.+|..|...+. +.-.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 35677888888888887442 3443 467889999999999999999999999987653 2222333 66777
Q ss_pred hhhcCChhHHHHHHHHHHHHHhhc
Q 008437 478 ISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 478 L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
++.+.++.++..|...+..+...+
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999988664
No 233
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.23 E-value=21 Score=38.46 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=85.4
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccC-CC--------ChHHHHH----cCchHHHhhccCCCChHHHHHHHHHHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTI-PS--------NIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLL 411 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~-~~--------nk~~iv~----~G~v~~Lv~Ll~~~~~~~~e~al~~L~ 411 (565)
.+..|+++|.+ ++....|++++.-|..+ ++ +.+.+.+ .-++|.|++-.++.+...+...+.+|.
T Consensus 272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 56778888875 45677788888877765 22 2233333 246777777555555557788888998
Q ss_pred HHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh
Q 008437 412 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478 (565)
Q Consensus 412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L 478 (565)
++..+-....-+-+-+..+|.|++-|...+..++..++.+|..+....++....-+ ..+||.|+.+
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~l 414 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLKL 414 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHhc
Confidence 88885432222333346788888888888999999999999999987754322211 1455555543
No 234
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.22 E-value=26 Score=38.91 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=104.9
Q ss_pred HHHhcccccCCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc----
Q 008437 265 LRFLESAVCERNSYAQEIGAMALFNLAVNNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK---- 337 (565)
Q Consensus 265 v~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k---- 337 (565)
..||.++..+.-..++..++.++..++.. | ....++ -++..|-.+|.++.. +-.|+.+|-.|+....-+
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~---nv~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEE---NVGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHh---ccCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 34444433334466888888888887742 3 112211 246677777777643 455888887787543211
Q ss_pred -----hhhccC-C--chHHHHHHhcCCCCHH-------------------HHHHHHHHHHHhccCCCChHHHHHcCchHH
Q 008437 338 -----PIIGSS-H--AVPFLVELCKGKTEHQ-------------------CKLDALHALYNLSTIPSNIPNLLSAGIISG 390 (565)
Q Consensus 338 -----~~I~~~-g--~i~~Lv~lL~~~~~~~-------------------~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~ 390 (565)
..|.+. . ..-++..||+.| ..+ .+..+..||..||..-+.+... .+.-
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s----~l~F 416 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS----YLDF 416 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH----HHHH
Confidence 222221 1 223445555555 222 3334445555555433322221 2334
Q ss_pred Hhh-ccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChH-------
Q 008437 391 LQS-LAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK------- 461 (565)
Q Consensus 391 Lv~-Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~------- 461 (565)
|.. |+..|..+.+..+..+|..+.. .++.++.++ ..|...+.+ -+--+-++.+|..|-+..+.
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraL------e~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~P~~y 488 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERAL------EVLCTFIED--CEYHQITVRILGILGREGPRAKTPGKY 488 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHH------HHHHHHHhh--cchhHHHHHHHHHhcccCCCCCCcchH
Confidence 444 4445555555666655554444 234444333 234444432 12234455555555443311
Q ss_pred ----HHHHHH-----hCCcHHHHHHhhhcC-ChhHHHHHHHHHHHHHhh
Q 008437 462 ----CCQMVL-----QEGVIPALVSISVNG-STRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 462 ----~~~~v~-----~~G~v~~Lv~L~~~~-s~~~k~~A~~lL~~L~~~ 500 (565)
+-+.++ ..+++..|....-+- +....+....+|+.+.+.
T Consensus 489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD 537 (898)
T COG5240 489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND 537 (898)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc
Confidence 112233 336666676554553 344445555666665444
No 235
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=0.37 Score=52.93 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=42.9
Q ss_pred Cccccccccccc----CCceecCCCcccchHHHHHHHhcCCCCCCCCCCC-----CCCCCCcccHHHHHHHHHH
Q 008437 71 EELRCPISLQLM----YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK-----LPHLCLTPNYCVKGLIASW 135 (565)
Q Consensus 71 ~~f~CpI~~~~m----~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~-----l~~~~l~pn~~l~~~i~~~ 135 (565)
+-++|+||...| ..||.+-||||.||.|.+.-+.. +|| |... ...+++.-|++|-+.+..-
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p~n~alL~~~~d~ 79 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEPRNYALLRREHDA 79 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcchhHHHHHhhcch
Confidence 457899997665 46999999999999999987754 577 3211 1224456677777666543
No 236
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.13 E-value=8.3 Score=38.71 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh
Q 008437 401 MWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI 478 (565)
Q Consensus 401 ~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L 478 (565)
.....|+.+|.-+|- ++..|..+.. ...+..|+.+|.. ..+.++-.++.+|..+...++.+.+...+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 344667788888887 5555555555 4999999999954 678899999999999998888888889999999999998
Q ss_pred hhcC--ChhHHHHHHHHHHHHH
Q 008437 479 SVNG--STRGRDKAQRLLMLFR 498 (565)
Q Consensus 479 ~~~~--s~~~k~~A~~lL~~L~ 498 (565)
..+. +..+|-|..+-|...-
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 7764 5677777777666643
No 237
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.03 E-value=33 Score=35.92 Aligned_cols=161 Identities=12% Similarity=0.007 Sum_probs=115.6
Q ss_pred hhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChH-----HHHHc--CchHHHhhccCCCChHHHHHHHHHH
Q 008437 339 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIP-----NLLSA--GIISGLQSLAVPGDPMWTEKSLAVL 410 (565)
Q Consensus 339 ~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~-----~iv~~--G~v~~Lv~Ll~~~~~~~~e~al~~L 410 (565)
.+...+.+..|+..|..- +-++++++..+..++-... +++. .+... .++..|+.-- +++.+.-.+-.+|
T Consensus 71 Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHH
Confidence 334568999999999988 8999999999999987543 3332 22221 2334444322 3556667888999
Q ss_pred HHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC---CcHHHHHHhhhcCChhHH
Q 008437 411 LNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE---GVIPALVSISVNGSTRGR 487 (565)
Q Consensus 411 ~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~---G~v~~Lv~L~~~~s~~~k 487 (565)
+..+..+.-...++.. ..+..+.+.+...+=++...|..++..|-..........+.. ..+.....|+.+++-.+|
T Consensus 148 Rec~k~e~l~~~iL~~-~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHESLAKIILYS-ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSHHHHHHHHTS-GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhHHHHHHHhCc-HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 9999888777777775 788889999998999999999999988665555455555544 456666789999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 008437 488 DKAQRLLMLFREQRQR 503 (565)
Q Consensus 488 ~~A~~lL~~L~~~r~~ 503 (565)
+.+.++|.-|--.|.+
T Consensus 227 rqslkLL~ellldr~n 242 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSN 242 (335)
T ss_dssp HHHHHHHHHHHHSGGG
T ss_pred hhhHHHHHHHHHchhH
Confidence 9999999987655543
No 238
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.35 E-value=1.3 Score=28.94 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 346 VPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 346 i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
+|.+++++.++ +++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 78999999999 99999999999998864
No 239
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.61 E-value=41 Score=39.09 Aligned_cols=230 Identities=18% Similarity=0.145 Sum_probs=126.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
|.+...+..+.+. ...+|..|+..|+.+.+.. .....+...+++...+..|++ .|.-+--+|+..+..|+--
T Consensus 727 e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd----edsyvyLnaI~gv~~Lcev-- 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD----EDSYVYLNAIRGVVSLCEV-- 798 (982)
T ss_pred HHHHHHHHHhcCC-cccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc----cCceeeHHHHHHHHHHHHh--
Confidence 4566677777765 6778889999999998543 445556668888888888887 5666666666655555521
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.....+|.|.+.-.+. ... .+.+..+| +.+.++++.-.+.-.+..+ .|.+
T Consensus 799 ------y~e~il~dL~e~Y~s~-------------k~k~~~d~~lkVG-----Eai~k~~qa~Gel~~~y~~--~Li~-- 850 (982)
T KOG4653|consen 799 ------YPEDILPDLSEEYLSE-------------KKKLQTDYRLKVG-----EAILKVAQALGELVFKYKA--VLIN-- 850 (982)
T ss_pred ------cchhhHHHHHHHHHhc-------------ccCCCccceehHH-----HHHHHHHHHhccHHHHHHH--HHHH--
Confidence 2334566665533222 111 13333333 4555554432122222222 1222
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCL 452 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L 452 (565)
..+..+++++..++..+++.|.+||.--..+..=.-+ .++..++.+... ++.-++..|+-.+
T Consensus 851 ----------------tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li 913 (982)
T KOG4653|consen 851 ----------------TFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLL 913 (982)
T ss_pred ----------------HHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHH
Confidence 2222334556677888888888888743322211222 456666666654 5777888888888
Q ss_pred HHhhcCChHHHHHHHhC---CcHHHHHHhhhc-CChhHHHHHHHHHHHHH
Q 008437 453 FLLCNGNEKCCQMVLQE---GVIPALVSISVN-GSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 453 ~~Lc~~~~~~~~~v~~~---G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~ 498 (565)
..+-..-++..-.+..+ .....+...... .++.+|-.|...|..+-
T Consensus 914 ~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 914 AELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 77665443222222222 222233333333 45556666665555543
No 240
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.33 E-value=1.9 Score=28.13 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 430 VSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 430 v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
++.+++++.+.++++|+.|+.+|..|+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 241
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=84.11 E-value=71 Score=35.66 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHH
Q 008437 216 ERYQDFLNVLNEG------ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFN 289 (565)
Q Consensus 216 e~i~~ll~~L~s~------~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~n 289 (565)
+.++.++.+|... ++|..-..|...|...+. +...-.+.+.+.|......+++-.-++.|++++..
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq--------~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ--------LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH--------HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4567777877651 355666666666666652 12223455677777655544666778889999988
Q ss_pred hhccCchhhHHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC--CCHHHHH
Q 008437 290 LAVNNNRNKELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--TEHQCKL 363 (565)
Q Consensus 290 La~~~~~nk~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--~~~~~~~ 363 (565)
.- +..++..... ..++|.|...+..+. ..+.+++++..++.+ ....|.-.|-++..+..+.-| +.+....
T Consensus 393 vm--~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ 468 (858)
T COG5215 393 VM--HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSI 468 (858)
T ss_pred hh--cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHh
Confidence 75 3345444432 467888888776542 345678888777644 122333234444433332222 2567788
Q ss_pred HHHHHHHHhcc
Q 008437 364 DALHALYNLST 374 (565)
Q Consensus 364 ~Al~aL~nLs~ 374 (565)
++.|+.-||..
T Consensus 469 ncsw~~~nlv~ 479 (858)
T COG5215 469 NCSWRKENLVD 479 (858)
T ss_pred hhHHHHHhHHH
Confidence 89999999874
No 242
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.08 E-value=2.9 Score=47.59 Aligned_cols=156 Identities=11% Similarity=0.102 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCchHHHH
Q 008437 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVIPLLE 311 (565)
Q Consensus 233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G~i~~Lv 311 (565)
...+++.++++|+..++..|..+.+.-+++.+-.++.. +++..|..++..+.||..+..-..+.+++ ...++...
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e----e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~ 633 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTE----ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWN 633 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc----ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHH
Confidence 35678999999998888888887775555555555544 67889999999999998765555666666 45677766
Q ss_pred HHhcCCcHH--HHHHHHHHHhcCC-CCCch-hhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcC
Q 008437 312 KMISNSNSH--GAATALYLNLSFL-DDAKP-IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAG 386 (565)
Q Consensus 312 ~lL~s~~~~--~~A~aaL~nLs~~-~~~k~-~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G 386 (565)
..+...... -.+++++..+... ...+. ......+...++.++.++ +.+++...+..+.|+.. ..+....+....
T Consensus 634 ~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~ 712 (748)
T KOG4151|consen 634 LNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETE 712 (748)
T ss_pred HHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccch
Confidence 666553222 2234444433333 33333 333356788999999998 88999999988888543 223344444444
Q ss_pred chHHHhh
Q 008437 387 IISGLQS 393 (565)
Q Consensus 387 ~v~~Lv~ 393 (565)
.++.+..
T Consensus 713 ~~~~l~~ 719 (748)
T KOG4151|consen 713 VMELLSG 719 (748)
T ss_pred HHHHHHH
Confidence 4444444
No 243
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.08 E-value=19 Score=41.18 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.+...|... ..-+|.+|+-+|-.+-+..+ .+ -..+-+.+-.+|... .|+.+.++|...|.... ++
T Consensus 135 l~p~IracleHr-hsYVRrNAilaifsIyk~~~----~L-~pDapeLi~~fL~~e---~DpsCkRNAFi~L~~~D---~E 202 (948)
T KOG1058|consen 135 LMPSIRACLEHR-HSYVRRNAILAIFSIYKNFE----HL-IPDAPELIESFLLTE---QDPSCKRNAFLMLFTTD---PE 202 (948)
T ss_pred hHHHHHHHHhCc-chhhhhhhheeehhHHhhhh----hh-cCChHHHHHHHHHhc---cCchhHHHHHHHHHhcC---HH
Confidence 345566777776 88899999988887765422 11 134455556777653 57888888877665432 22
Q ss_pred hhHH--------HHhcC--chHHHHHHhcC-----CcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHH
Q 008437 297 NKEL--------MLAAG--VIPLLEKMISN-----SNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQC 361 (565)
Q Consensus 297 nk~~--------i~~~G--~i~~Lv~lL~s-----~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~ 361 (565)
.... |-.-| ..-.+++++.. +..+..-..++.+|-...+.....-..|.+-. + +. ++.+
T Consensus 203 rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~---l--S~-~p~a 276 (948)
T KOG1058|consen 203 RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVT---L--SN-DPTA 276 (948)
T ss_pred HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEE---c--cC-CHHH
Confidence 2111 11111 11123333321 22233345566665433322222222343322 2 34 6888
Q ss_pred HHHHHHHHHHhcc-CCCChHHHHHc---------------CchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437 362 KLDALHALYNLST-IPSNIPNLLSA---------------GIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 362 ~~~Al~aL~nLs~-~~~nk~~iv~~---------------G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~ 416 (565)
.+.|+.++..|.. ..+|..+++.. |.+--+++++...+..++.+++.+..-|+.+
T Consensus 277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 8999999888874 33455444321 1222233344556667777777777766664
No 244
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.83 E-value=2.8 Score=36.95 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=55.7
Q ss_pred CCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 428 GLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 428 g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..+..|+++|.. .++....-|+.=|..+++.-+..+..+.+.|+-..++.|+.+.++.+|..|..+++.|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 357788888854 46667777777888888877767787778898889999999999999999999888753
No 245
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.64 E-value=0.5 Score=54.13 Aligned_cols=44 Identities=23% Similarity=0.659 Sum_probs=33.8
Q ss_pred cccccccccC--C---ceec--CCCcccchHHHHHHHhc-CCCCCCCCCCCC
Q 008437 74 RCPISLQLMY--D---PVII--ASGQTYERICIEKWLSD-GHSTCPKTQQKL 117 (565)
Q Consensus 74 ~CpI~~~~m~--d---PV~~--~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l 117 (565)
.|+||.-++. | |--. .|.|.|--+|+-+||.. ++.+||.|+..+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 5999998875 3 2211 26788999999999984 678999998654
No 246
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=83.60 E-value=0.5 Score=49.10 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=38.6
Q ss_pred cccccccccCCceecCCCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437 74 RCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLP 118 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~ 118 (565)
+|-||-+==+|=-+-+|||-.|-.|+..|... +..+||.|+-.+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 79999998888778899999999999999854 4789999985554
No 247
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.49 E-value=13 Score=34.99 Aligned_cols=93 Identities=22% Similarity=0.143 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL 437 (565)
++.++.+++.+|.-|+...++ +++ ..++.+...|.+.++.+++.|+.+|..|...+--+. .+..+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 467899999999999864432 222 246777787888999999999999999987532221 112337788888
Q ss_pred hcCCHHHHHHHHHHHHHhhcC
Q 008437 438 DTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 438 ~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
.+.++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999998876
No 248
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=0.62 Score=49.75 Aligned_cols=51 Identities=18% Similarity=0.455 Sum_probs=37.8
Q ss_pred CCCcccccccccccC-----------------CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 69 PPEELRCPISLQLMY-----------------DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~-----------------dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
+-..--|+||+.-.. +=+++||.|.|-|.|+++|.+.-.-.||+|+.+|.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445567999986321 123458999999999999998534579999998753
No 249
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.36 E-value=0.55 Score=48.61 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=42.4
Q ss_pred cccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 72 ~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
.+.|.|++++|.| |++.+.|++|--.+|+.|=...+-.||.++..+...
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 3789999999987 899999999999999999875458899998877543
No 250
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.03 E-value=7.4 Score=39.13 Aligned_cols=134 Identities=22% Similarity=0.166 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHc-C-chHHHhh-ccCCC---ChHHHHHHHHHHHHHhcCcc-cH--HHHhcCCC
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSA-G-IISGLQS-LAVPG---DPMWTEKSLAVLLNLAASAA-GK--EEMNSTPG 428 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~-G-~v~~Lv~-Ll~~~---~~~~~e~al~~L~nLa~~~~-~r--~~i~~~~g 428 (565)
.+..+.-++++|.|+-.+...+..+.+. + .+...+. +.... +..++-.++.++.|++..-. .+ .... ..
T Consensus 123 ~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~--~~ 200 (268)
T PF08324_consen 123 PPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ--SE 200 (268)
T ss_dssp SHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH--HH
T ss_pred cHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH--HH
Confidence 6678888999999999999888888764 3 4555555 44332 67888888899999986210 11 0000 01
Q ss_pred CHHHHHHHhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHH
Q 008437 429 LVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRL 493 (565)
Q Consensus 429 ~v~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~l 493 (565)
.+..+++.+.. .+++..-.++.+|.+|...+.........-|+-..+.... ....++.++.+..|
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 34555553332 6889999999999999987765555544456655554443 55678888888764
No 251
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=82.23 E-value=25 Score=37.57 Aligned_cols=93 Identities=8% Similarity=0.101 Sum_probs=70.8
Q ss_pred CchHHHHHHhcCCc-----HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhc-CC--CCHHHHHHHHHHHHHhccC
Q 008437 305 GVIPLLEKMISNSN-----SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK-GK--TEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 305 G~i~~Lv~lL~s~~-----~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~-~~--~~~~~~~~Al~aL~nLs~~ 375 (565)
-.+..|..++++.. ....|+.++..+-.+ +..-..|.+.|.++.+++.+. .+ .+.++...--.+|..||.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 45666777777643 234467777776555 445567778999999999988 54 3667777777889999999
Q ss_pred CCChHHHHHcCchHHHhhccCC
Q 008437 376 PSNIPNLLSAGIISGLQSLAVP 397 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~ 397 (565)
......+.+.+.++.+++++.+
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHHHhcChHHHHHHHhCC
Confidence 9999999999999999997654
No 252
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=81.71 E-value=24 Score=42.32 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=77.8
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 424 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~ 424 (565)
.++.|+..|.+. |...+-+=...|..+|..-. .+-++++.+|.|.+-+.++++.+...|+..|.-|+...--+...+
T Consensus 618 iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 ILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred hHHHHHHHhcCc-cHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 557888888877 77777665566665554322 223577788888887778889999999999999999765555443
Q ss_pred cCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 425 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 425 ~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
- ..+....-+|-..+..++..++.++..+.+
T Consensus 695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred H--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 3 244455556666788999999999988765
No 253
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.68 E-value=12 Score=44.74 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=99.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhH
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 299 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~ 299 (565)
++.-+++. +...|..++..|..|.+..+ +....+ ..- |+-++=+++. .+...+++|..+|..+.. ..
T Consensus 702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~-I~EvIL~~Ke----~n~~aR~~Af~lL~~i~~-----i~ 769 (1176)
T KOG1248|consen 702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI-PKL-IPEVILSLKE----VNVKARRNAFALLVFIGA-----IQ 769 (1176)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH-HHH-HHHHHHhccc----ccHHHHhhHHHHHHHHHH-----HH
Confidence 33444443 45567777777777765544 222221 122 2222222243 578889999998888762 11
Q ss_pred HHHhcC------chHHHHHHhcCC---cHHHHHHHHHHHhcCC-CCCchhhcc---CCchHHHHHHhcCCCCHHHHHHHH
Q 008437 300 LMLAAG------VIPLLEKMISNS---NSHGAATALYLNLSFL-DDAKPIIGS---SHAVPFLVELCKGKTEHQCKLDAL 366 (565)
Q Consensus 300 ~i~~~G------~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~-~~~k~~I~~---~g~i~~Lv~lL~~~~~~~~~~~Al 366 (565)
...+.| .|...+.++..+ +....++..|..+... .+.+..+.. .+.|..+.-.|.++ +++..+.|+
T Consensus 770 ~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI 848 (1176)
T KOG1248|consen 770 SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAI 848 (1176)
T ss_pred hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 111122 455555555543 2222222223333221 222233321 23444444556667 899999999
Q ss_pred HHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 367 HALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 367 ~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
+.|.-++. .++.+..--..-+++.++.++.+....++..+..+|..|+.
T Consensus 849 ~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 849 GFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99998875 44444444444577777777776667777777777777765
No 254
>PF04641 Rtf2: Rtf2 RING-finger
Probab=81.35 E-value=1.6 Score=44.06 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=32.2
Q ss_pred CcccccccccccCCceecC-CCcccchHHHHHHHhcC
Q 008437 71 EELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDG 106 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~ 106 (565)
.-+.|+||++.+.+||+.+ -|+-|.+.+|-.||...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 3678999999999999774 89999999999999864
No 255
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.30 E-value=39 Score=40.12 Aligned_cols=229 Identities=17% Similarity=0.172 Sum_probs=124.7
Q ss_pred hHHHHHHHHHhcC-------CCH----HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccc-----c-cCCCHH
Q 008437 216 ERYQDFLNVLNEG-------ENL----GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA-----V-CERNSY 278 (565)
Q Consensus 216 e~i~~ll~~L~s~-------~~~----~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----~-~s~~~~ 278 (565)
+.+-.+|..|+++ .+- ...+..+.+++.+..-+...+..++++|+...|+..|-.- . +..|.-
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 3445566666653 011 2244456677777766777888999999998888777421 1 111211
Q ss_pred HHHHHHHHHHH---hhc-cCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc
Q 008437 279 AQEIGAMALFN---LAV-NNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK 354 (565)
Q Consensus 279 ~q~~A~~aL~n---La~-~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~ 354 (565)
+-..-...|+. ++. .+..|+..+-..=.-..+..+|.-. .|-+.+..+..|.. ..+.-.+.|-
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLres-----------gllcvnler~viql--llElalevlv 866 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRES-----------GLLCVNLERHVIQL--LLELALEVLV 866 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHh-----------ccceecchHHHHHH--HHHHHHHhhC
Confidence 11122222222 221 1333443332111122222333211 11122222222211 1111112222
Q ss_pred CCCCHHHHHHHHHHHHHhcc-----------CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 355 GKTEHQCKLDALHALYNLST-----------IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 355 ~~~~~~~~~~Al~aL~nLs~-----------~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
.. ....-..|+..++.+-. ....+.++..+|++..|++.+-...+.++-.-+.+|..++.....-++.
T Consensus 867 pp-fLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnael 945 (2799)
T KOG1788|consen 867 PP-FLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAEL 945 (2799)
T ss_pred Cc-hhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhh
Confidence 22 23333456666665531 1236788899999999999333456788888999999999866555566
Q ss_pred hcCCCCHHHHHHHhh---cCCHHHHHHHHHHHHHhhcC
Q 008437 424 NSTPGLVSGLATVLD---TGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~---~~s~~~~e~Av~~L~~Lc~~ 458 (565)
....|++..|++++. .++...--+|..++..||..
T Consensus 946 ltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 946 LTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred hhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 666699999999875 35666777888888888753
No 256
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.18 E-value=3.9 Score=45.89 Aligned_cols=149 Identities=19% Similarity=0.040 Sum_probs=89.5
Q ss_pred CchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCC-ChH-HH-----HH-----cCc----hHHHhhccCCCChHHHHHH
Q 008437 344 HAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS-NIP-NL-----LS-----AGI----ISGLQSLAVPGDPMWTEKS 406 (565)
Q Consensus 344 g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~-nk~-~i-----v~-----~G~----v~~Lv~Ll~~~~~~~~e~a 406 (565)
|.+-.|+.++... ..+...++-...|.+|+.+.. ... +- ++ -|+ ...++.|+++.+..++-..
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~ 319 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF 319 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence 4444455555433 234556666666666664332 111 11 11 122 3456668887777777778
Q ss_pred HHHHHHHhcCcccHHHHhcC-----CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChH---HHHHHHhCCcHHHHHHh
Q 008437 407 LAVLLNLAASAAGKEEMNST-----PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK---CCQMVLQEGVIPALVSI 478 (565)
Q Consensus 407 l~~L~nLa~~~~~r~~i~~~-----~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~---~~~~v~~~G~v~~Lv~L 478 (565)
+.+++|+..+-.-..+++++ ...+..|++.+.+.+|-.+..|+.++..||..+.. .+..+ +...+.-
T Consensus 320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev-----~~lv~r~ 394 (1128)
T COG5098 320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEV-----IRLVGRR 394 (1128)
T ss_pred HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHH-----HHHHHHH
Confidence 88888888744333344432 12455555566678999999999999999976642 23332 2223445
Q ss_pred hhcCChhHHHHHHHHHHHH
Q 008437 479 SVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 479 ~~~~s~~~k~~A~~lL~~L 497 (565)
+.+.+..+|++|.+++.-|
T Consensus 395 lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 395 LQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 6677888999999888764
No 257
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.86 E-value=8.2 Score=43.01 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHH
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATV 436 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~l 436 (565)
+...++-|+..|.....+-+.. +.-++..+++|..+.+..++..|+..|-.+|.+. +....+ +..|+++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~Ql 104 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLVQL 104 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHHHH
Confidence 4556666666555544322211 1224555666666677777777777777777752 333333 3457777
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh---cCChhHHHHHHHHHH
Q 008437 437 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV---NGSTRGRDKAQRLLM 495 (565)
Q Consensus 437 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~---~~s~~~k~~A~~lL~ 495 (565)
|.+.++.+...+-.+|..|-..++. |.+..|..-+. ++++.+|+++..-|+
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 7777766666666666666655542 22333333222 566667777555443
No 258
>PRK14707 hypothetical protein; Provisional
Probab=80.32 E-value=1.4e+02 Score=38.64 Aligned_cols=236 Identities=13% Similarity=0.005 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 215 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 215 ~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
-.++...+..|+.=.+......|+..|..-.-++.+.+..|-..| |..++.-|+.+ ++..+...|+..|..--.++
T Consensus 372 ~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKW---Pd~~~C~~aa~~lA~~la~d 447 (2710)
T PRK14707 372 PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKW---PDLPICGQAVSALAGRLAHD 447 (2710)
T ss_pred hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcC---CcchhHHHHHHHHHHHHhcc
Confidence 357777888887643666777788888777778888888876665 56666666665 45666666666665433344
Q ss_pred chhhHHHHhcCchHHHHHHhcC-CcH--HHHHHHHHH-HhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISN-SNS--HGAATALYL-NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s-~~~--~~~A~aaL~-nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
.+.++.|--.+ |..+.+.|+. +++ ...|+..|. .|+...+.+..+--.++...|-.|-+-++...+.+.+.++..
T Consensus 448 ~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~ 526 (2710)
T PRK14707 448 TELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAE 526 (2710)
T ss_pred HHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 44444443333 3333333432 332 233444443 355554444444333333444444343423444454444444
Q ss_pred HhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc--CCHHHHHH
Q 008437 371 NLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQ 447 (565)
Q Consensus 371 nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~ 447 (565)
.|.....- ..+...--+..++. +.+..+...++.+...|..+.........-++. ..|..++.-|.. ..+..++.
T Consensus 527 rl~~~~~l-~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~a-q~Vs~llNaLSKWP~~~aC~~A 604 (2710)
T PRK14707 527 RVVDELQL-RKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHR-QGVVIVLNALSKWPDTAVCAEA 604 (2710)
T ss_pred Hhccchhh-hhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhh-hHHHHHHHhhccCCCcHHHHHH
Confidence 44432222 22222222333344 666666777777777777765544444444442 567777777765 34444444
Q ss_pred HHHHHHHhhc
Q 008437 448 AVSCLFLLCN 457 (565)
Q Consensus 448 Av~~L~~Lc~ 457 (565)
+..+-..|..
T Consensus 605 a~~LA~~l~~ 614 (2710)
T PRK14707 605 VNALAERLVD 614 (2710)
T ss_pred HHHHHHHhcc
Confidence 4443344443
No 259
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=80.21 E-value=70 Score=32.28 Aligned_cols=200 Identities=16% Similarity=0.162 Sum_probs=117.4
Q ss_pred hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC--cHHHHHHHHHHHhcC
Q 008437 255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS--NSHGAATALYLNLSF 332 (565)
Q Consensus 255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs~ 332 (565)
+....+++.|+..|... +..+.++..|..+|.++. .+ +.++.|-++.+.+ ..++.+..++..+-.
T Consensus 63 ~~~~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hccchhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 44567899999988762 356788888999998875 22 2344455555333 112223333332221
Q ss_pred ---CCC--Cchhh--------ccCCchHHHHHHhcCCCCHHH-HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCC
Q 008437 333 ---LDD--AKPII--------GSSHAVPFLVELCKGKTEHQC-KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG 398 (565)
Q Consensus 333 ---~~~--~k~~I--------~~~g~i~~Lv~lL~~~~~~~~-~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~ 398 (565)
.+. +.... ...+-|..|-..|.+.+.+.. +..|+-.|.|+-. ..+|-.|++=+..+
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~ 199 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADD 199 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccc
Confidence 111 01011 112235555555544422222 2333334433321 12555666634445
Q ss_pred ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHH
Q 008437 399 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV 476 (565)
Q Consensus 399 ~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv 476 (565)
+...+-.++-+|..|-+ +..|+.|.+.|.. ..+.++..|+.+|..++... .++.|.
T Consensus 200 SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~ 257 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLK 257 (289)
T ss_pred hHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHH
Confidence 66677777777776643 5678999999875 57889999999999887532 255667
Q ss_pred HhhhcCChhHHHHHHHHHHHHHh
Q 008437 477 SISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 477 ~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
..+.+..+.+++.+.-+|.++..
T Consensus 258 e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHH
Confidence 77888888888888888887663
No 260
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.18 E-value=27 Score=39.34 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=93.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh---ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 222 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG---ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 222 l~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~---~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
+..|..- +++.+.-|+..||.++++..-+-..+- ...++..|+..+. .++..+..++++|.|+- .++.++
T Consensus 550 l~~l~~w-p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f-~~~~g~ 622 (745)
T KOG0301|consen 550 LAILLQW-PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLF-SNPAGR 622 (745)
T ss_pred HHHHhcC-CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhc-cCHHHH
Confidence 3444444 678889999999999887654433332 1335555665554 35678888999999996 467777
Q ss_pred HHHHhcCchHHHHHHh---cCCc--HHHHHHH-HHHHhcCC--CCCchhhccCCchHHHHHHhc----CCCCHHHHHHHH
Q 008437 299 ELMLAAGVIPLLEKMI---SNSN--SHGAATA-LYLNLSFL--DDAKPIIGSSHAVPFLVELCK----GKTEHQCKLDAL 366 (565)
Q Consensus 299 ~~i~~~G~i~~Lv~lL---~s~~--~~~~A~a-aL~nLs~~--~~~k~~I~~~g~i~~Lv~lL~----~~~~~~~~~~Al 366 (565)
+.+... ...+...+ ++.+ ....|.+ .++|++.. .++-+ .++.+.|..++. .-.+.++.-.++
T Consensus 623 ~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l 696 (745)
T KOG0301|consen 623 ELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLL 696 (745)
T ss_pred HHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHH
Confidence 777654 22222222 2222 1222333 34455432 22211 344444444433 222456677788
Q ss_pred HHHHHhccCCCChHHHHHcCchHHHhh
Q 008437 367 HALYNLSTIPSNIPNLLSAGIISGLQS 393 (565)
Q Consensus 367 ~aL~nLs~~~~nk~~iv~~G~v~~Lv~ 393 (565)
.||-+|+..+.+..++...=-|..++.
T Consensus 697 ~AlgtL~t~~~~~~~~A~~~~v~sia~ 723 (745)
T KOG0301|consen 697 VALGTLMTVDASVIQLAKNRSVDSIAK 723 (745)
T ss_pred HHHHhhccccHHHHHHHHhcCHHHHHH
Confidence 899999998888777777656666666
No 261
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.03 E-value=56 Score=32.98 Aligned_cols=209 Identities=17% Similarity=0.106 Sum_probs=121.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 008437 224 VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 303 (565)
Q Consensus 224 ~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~ 303 (565)
-|.+. +...|.+|+..|..+...-+.. .....-+..|+.++.+.. .|......++.+|..|.....-....
T Consensus 7 ~Ltse-d~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~--- 77 (262)
T PF14500_consen 7 YLTSE-DPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPES--- 77 (262)
T ss_pred hhCCC-CHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence 45555 8899999999999887654322 133334788888887654 34555555566666665322111111
Q ss_pred cCchHHHHHHhcCC-------cHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 304 AGVIPLLEKMISNS-------NSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 304 ~G~i~~Lv~lL~s~-------~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
+...+-.+.+.- ..+..+..+|..|..+ ....+.. .+.+..++++++.+.||+....+...+..+..
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 122222223222 1234455555555432 2333332 46788888988877799999999998888875
Q ss_pred CCCChHHHHHcCchHHHhhcc--------CC--CCh--HHHHHHH-HHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCC
Q 008437 375 IPSNIPNLLSAGIISGLQSLA--------VP--GDP--MWTEKSL-AVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 441 (565)
Q Consensus 375 ~~~nk~~iv~~G~v~~Lv~Ll--------~~--~~~--~~~e~al-~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s 441 (565)
.-+. ...++.|.+.+ .. +++ ...+.-- ++...|+.++ .+. +-+++.|++.|.+++
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFPLLLEKLDSTS 221 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHHHHHHHHcCCC
Confidence 4442 22333333321 11 222 2233333 3333444433 222 257899999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 008437 442 LIEQEQAVSCLFLLCN 457 (565)
Q Consensus 442 ~~~~e~Av~~L~~Lc~ 457 (565)
+.++..++.+|...+.
T Consensus 222 ~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE 237 (262)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999987554
No 262
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=79.70 E-value=1.3 Score=35.66 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=31.3
Q ss_pred cccccccccC----Cceec-CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 74 RCPISLQLMY----DPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 74 ~CpI~~~~m~----dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
+||-|.-=|. =||+. -|.|.|--.||.+|+.. ...||.++|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 3555554441 13433 59999999999999986 67899999875
No 263
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.51 E-value=0.75 Score=36.66 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=32.3
Q ss_pred cccccccccccCC-ceec-CCCcccchHHHHHHHhc--CCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYD-PVII-ASGQTYERICIEKWLSD--GHSTCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~d-PV~~-~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~ 118 (565)
+=.||-|.-.=.| |.++ -|.|.|-+.||.+|+.. ....||.|+|...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3345555433333 4444 59999999999999974 3567999998753
No 264
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=78.93 E-value=1.2 Score=45.35 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=32.7
Q ss_pred CcccccccccccCC--ceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYD--PVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 121 (565)
Q Consensus 71 ~~f~CpI~~~~m~d--PV~~--~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 121 (565)
+++ ||+|.+.|.- -=.. +||...||-|...--..-+..||.|+...++..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 345 9999998852 2233 588877777744333333567999998876643
No 265
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.83 E-value=39 Score=39.34 Aligned_cols=221 Identities=15% Similarity=0.144 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.....+..|.....+.++..++..+.++++.-+. .....+.++.+..++.. ....+++.|...+.++...-
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~D----dqdsVr~~a~~~~~~l~~l~-- 307 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRD----DQDSVREAAVESLVSLLDLL-- 307 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhc----chhhHHHHHHHHHHHHHHhc--
Confidence 3456666666655788888888888888765433 56678889999999876 34567787877766654211
Q ss_pred hhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 297 NKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
+...=...-..+.++.....++.+ ...+.....|... .....+...-+++...+++.. ..+.+..++.-...++.
T Consensus 308 ~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~~l~~~~-~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 308 DDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSA--VGPSATRTQLVPPVSNLLKDE-EWEVRYAIAKKVQKLAC 384 (759)
T ss_pred CCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHH--hccccCcccchhhHHHHhcch-hhhhhHHhhcchHHHhh
Confidence 111011223466677777666432 2222222223211 001222234566777777655 34444444444444432
Q ss_pred --CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 375 --IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 375 --~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
+.+....+...-++|.+..++.+.+..++...+..+.++.-.- ++..-+. -..+.+...+.+..+.++.+-+..|
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~-~k~~ti~--~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL-PKERTIS--ELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccC-CcCcCcc--ccChhhhhhcchhhHHHHHhhHHHH
Confidence 3334555555556676666665555555555555555443311 1111111 2344444445555555555555444
No 266
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.91 E-value=5.6 Score=37.46 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=56.5
Q ss_pred HHhcCCCCHHHHHHHhhc---------CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437 422 EMNSTPGLVSGLATVLDT---------GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 492 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~---------~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~ 492 (565)
.+++. ||+..|+.+|.. .+......++.+|..|.....+....+...+++..|+..+.+.+.++|..|..
T Consensus 102 ~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 102 EFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44444 677777777653 23467788999999999888765555556899999999888999999999999
Q ss_pred HHHHHH
Q 008437 493 LLMLFR 498 (565)
Q Consensus 493 lL~~L~ 498 (565)
+|..+.
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 267
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.60 E-value=7 Score=39.31 Aligned_cols=172 Identities=19% Similarity=0.152 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccC--CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANG--FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
....++..+..= +.+.+.-++..+|.++.+ +..-..+...+ ....+..++........+..+..++++|.|+-. +
T Consensus 64 ~~~~~~~~~~~W-p~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~ 140 (268)
T PF08324_consen 64 WLILLLKILLSW-PPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-H 140 (268)
T ss_dssp HHHHHHHHHCCS--CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHhC-CCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-C
Confidence 334455555443 446677888888888754 33444444422 356666666655444677888999999999964 5
Q ss_pred chhhHHHHhc-C-chHHHHHHhcCC----c--HHHHHHHHHHHhcCCC-CCch-hhccCCchHHHHHHh-cCCCCHHHHH
Q 008437 295 NRNKELMLAA-G-VIPLLEKMISNS----N--SHGAATALYLNLSFLD-DAKP-IIGSSHAVPFLVELC-KGKTEHQCKL 363 (565)
Q Consensus 295 ~~nk~~i~~~-G-~i~~Lv~lL~s~----~--~~~~A~aaL~nLs~~~-~~k~-~I~~~g~i~~Lv~lL-~~~~~~~~~~ 363 (565)
...+..+.+. + .+-..+..+... + .+..++.+++|++..- ..+. .-.....+..+++++ ....++++.-
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~ 220 (268)
T PF08324_consen 141 PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALY 220 (268)
T ss_dssp CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHH
T ss_pred CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHH
Confidence 6677777654 3 232232222222 1 2344677788987531 1110 001123466677743 3324899999
Q ss_pred HHHHHHHHhccCCCChHHHHH-cCchHHH
Q 008437 364 DALHALYNLSTIPSNIPNLLS-AGIISGL 391 (565)
Q Consensus 364 ~Al~aL~nLs~~~~nk~~iv~-~G~v~~L 391 (565)
.++.||.+|...+.....+.+ .|+-..+
T Consensus 221 R~LvAlGtL~~~~~~~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 221 RLLVALGTLLSSSDSAKQLAKSLDVKSVL 249 (268)
T ss_dssp HHHHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHcChHHHH
Confidence 999999999976666555555 3444333
No 268
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.53 E-value=57 Score=38.89 Aligned_cols=252 Identities=16% Similarity=0.143 Sum_probs=142.6
Q ss_pred HHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc
Q 008437 239 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN 318 (565)
Q Consensus 239 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~ 318 (565)
..|-.+.+.+.+|...+.++.++..++.+|-+. +-+-.-++++..|-..++.. ++..-+-+|+..|++|-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflind------ehRSslLrivscLitvdpkq----vhhqelmalVdtLksgm 733 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIND------EHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGM 733 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeech------HHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcc
Confidence 456677888999999999988888888888542 12222233333333222210 12233557788887741
Q ss_pred H--------------HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcC---------CCCHHHHHHHHHHHHHh--
Q 008437 319 S--------------HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKG---------KTEHQCKLDALHALYNL-- 372 (565)
Q Consensus 319 ~--------------~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~---------~~~~~~~~~Al~aL~nL-- 372 (565)
. ....+++++..... ...+..++++++...|...|.. ..|.-....-...|+.|
T Consensus 734 vt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfT 813 (2799)
T KOG1788|consen 734 VTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFT 813 (2799)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHH
Confidence 1 11246667666543 5667788888888887777631 11222222333344332
Q ss_pred ---ccCCCChHHHH-------------HcC---------chHHHhhc-cC---CCChHHHHHHHHHHHHHhc--------
Q 008437 373 ---STIPSNIPNLL-------------SAG---------IISGLQSL-AV---PGDPMWTEKSLAVLLNLAA-------- 415 (565)
Q Consensus 373 ---s~~~~nk~~iv-------------~~G---------~v~~Lv~L-l~---~~~~~~~e~al~~L~nLa~-------- 415 (565)
|.+..|+..+- +.| .|..|.++ ++ .....---.|++.+..+-.
T Consensus 814 lavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 814 LAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC
Confidence 34555665432 233 22222221 11 1111101122222222221
Q ss_pred ---CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh---hcCChhHHHH
Q 008437 416 ---SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS---VNGSTRGRDK 489 (565)
Q Consensus 416 ---~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~---~~~s~~~k~~ 489 (565)
....++.|... |++..|++.+....++.+-.-+..|..+++.++.........|-+..|+++. ..|+...--.
T Consensus 894 sGqfnpdk~~iyna-gavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsh 972 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNA-GAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSH 972 (2799)
T ss_pred CCCcCchHhhhccc-chhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhc
Confidence 11245566765 8999999998888999999999999999998876666666778887776643 3455555556
Q ss_pred HHHHHHHHHhhc
Q 008437 490 AQRLLMLFREQR 501 (565)
Q Consensus 490 A~~lL~~L~~~r 501 (565)
|-+++.+|..+|
T Consensus 973 alkIvemLgayr 984 (2799)
T KOG1788|consen 973 ALKIVEMLGAYR 984 (2799)
T ss_pred cHHHHHHHhhcc
Confidence 666666665544
No 269
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=77.04 E-value=71 Score=37.54 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
..+...+.+. +|..|.+|++.+.....+.. .....|....+..++.....+.+..+...|+..|-.++.. .+
T Consensus 256 ~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~---lr 327 (815)
T KOG1820|consen 256 KNLETEMLSK-KWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK---LR 327 (815)
T ss_pred hHHHHhhhcc-chHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh---cc
Confidence 3455566665 99999999999998885432 2223333333333333222224666777777778777743 33
Q ss_pred HHHHh--cCchHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 299 ELMLA--AGVIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 299 ~~i~~--~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
..... .++++.|..-+..- ..++.+..++-.... .......++.+..+++++ +++.+..+...+--...
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGK-NPQIKGECLLLLDRKLR 400 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHh
Confidence 33332 25677776666432 333444444322221 111235668888889998 88888776655544432
Q ss_pred -CC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 375 -IP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 375 -~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
.. .+...-.-.++++.++....+.+..++..|+.++.-+..
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 22 222222234677888887778888999988888876654
No 270
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.89 E-value=1.5e+02 Score=36.86 Aligned_cols=264 Identities=13% Similarity=0.119 Sum_probs=138.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
++++-.+...|..|..|+..+..+++.. +..+.. .-.||.|.++=.+ ++..+|.. ..-++|.-..+ .|
T Consensus 961 FM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yD----P~~~Vq~a-M~sIW~~Li~D--~k 1030 (1702)
T KOG0915|consen 961 FMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYD----PDKKVQDA-MTSIWNALITD--SK 1030 (1702)
T ss_pred HHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccC----CcHHHHHH-HHHHHHHhccC--hH
Confidence 3333344446777888888888887543 222221 2346666665544 67777654 45577765433 22
Q ss_pred HHHHh--cCchHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHH---HHHHHH
Q 008437 299 ELMLA--AGVIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLD---ALHALY 370 (565)
Q Consensus 299 ~~i~~--~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~---Al~aL~ 370 (565)
..+-+ ..++.-|+.-|.+. ..++.++-+|.-|-...+.-...-. ......+++.+++= ...++++ ++.+|.
T Consensus 1031 ~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1031 KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 22222 23444444444443 2467788888777665444333221 23344455555432 4445554 455555
Q ss_pred Hhcc---C--CCChHHHHHcCchHHHhh--ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-CCCHHHHHHHhhcCC-
Q 008437 371 NLST---I--PSNIPNLLSAGIISGLQS--LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDTGE- 441 (565)
Q Consensus 371 nLs~---~--~~nk~~iv~~G~v~~Lv~--Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~lL~~~s- 441 (565)
.||. + +..+..-+-+-++|.|++ ++ +.-..++..++.+|.-|+.+... .+.-+ +..|+.|+.....-+
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~--~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGK--ELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred HHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchh--hhcchhhHHHHHHHHHccccch
Confidence 5542 2 223333333457777777 45 56678889999999999986543 22211 245555555443322
Q ss_pred ----------HHHHHHHHHHHHH-hhcCCh--HHHHHHH-------hCCcHHHHHHhhhcC-ChhHHHHHHHHHHHHH
Q 008437 442 ----------LIEQEQAVSCLFL-LCNGNE--KCCQMVL-------QEGVIPALVSISVNG-STRGRDKAQRLLMLFR 498 (565)
Q Consensus 442 ----------~~~~e~Av~~L~~-Lc~~~~--~~~~~v~-------~~G~v~~Lv~L~~~~-s~~~k~~A~~lL~~L~ 498 (565)
......|+..+.. .+..++ +.....+ -+..+|.+.++++++ .-.+|-.++..+-.|.
T Consensus 1187 ~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1187 QVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 2233445555533 444443 2222222 135678888888775 3444555555555555
No 271
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=76.82 E-value=1.6 Score=36.84 Aligned_cols=27 Identities=22% Similarity=0.754 Sum_probs=23.8
Q ss_pred CCCcccchHHHHHHHhcCCCCCCCCCCC
Q 008437 89 ASGQTYERICIEKWLSDGHSTCPKTQQK 116 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~~~~~cP~t~~~ 116 (565)
.|.|.|--.||.+|+.. +..||.++++
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 48999999999999986 6789999765
No 272
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=76.56 E-value=19 Score=41.98 Aligned_cols=182 Identities=20% Similarity=0.175 Sum_probs=107.2
Q ss_pred hHHHHHHhcCCcHHHHHHHHHHHhcCCCC----------Cchhhcc----CCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 307 IPLLEKMISNSNSHGAATALYLNLSFLDD----------AKPIIGS----SHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 307 i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~----------~k~~I~~----~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
-..|+..|++++....|+-++.-+..+.. .+ .+-. ...+|.|+...... ....+..=+.+|.++
T Consensus 817 a~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~r-iLykQRfF~~ivP~l~~~~~t~-~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 817 AEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPR-ILYKQRFFCDIVPILVSKFETA-PGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchh-HHHHHHHHHhhHHHHHHHhccC-CccchhHHHHHHHHH
Confidence 44566667665544445554444433321 11 1211 36789999888855 555677777888887
Q ss_pred ccCCCChHHHHH--cCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCC---HHHHH
Q 008437 373 STIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGE---LIEQE 446 (565)
Q Consensus 373 s~~~~nk~~iv~--~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s---~~~~e 446 (565)
-.+-.- ..+.. ....|.|++-+.-.+..++-.++.+|.-+..-. .-...-++ -.|+.++.+=.+.+ ..+++
T Consensus 895 l~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~--Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 895 LTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS--TLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh--HHHHHHHhcCCCCCcchhHHHH
Confidence 663332 33332 356777777555567777777888877665532 22222232 35666666644332 67899
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 447 ~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
.|+.+|..|.+.-+-..-.-.+..++..|...+.+.--.+|+.|+..
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 99999999998443222222334566677777766666666666543
No 273
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=1.7 Score=45.02 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=37.4
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
..+.|..-.|-||.+=.++-|.++|||+.| |+.-.. ..++||+|++.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 445566778999999999999999999988 655433 346699998754
No 274
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=76.44 E-value=1.1 Score=25.27 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=9.4
Q ss_pred hhccccceeeecCCc
Q 008437 545 RKMGKAFSFLWKSKS 559 (565)
Q Consensus 545 ~~~~~~~~~~~~~~~ 559 (565)
||.| =-+||||+.+
T Consensus 3 ~k~~-CknffWK~~t 16 (18)
T PF03002_consen 3 RKAG-CKNFFWKTFT 16 (18)
T ss_pred cccc-ccceeecccc
Confidence 3444 3489999764
No 275
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.91 E-value=9.7 Score=35.23 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+.+..++..+-...+.+....++..+..+--..++....+. ..|+++.|+.+... ...+...|..++.+|..-+ .
T Consensus 42 ~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~--~~~~~~~~~~~lell~aAc-~- 117 (157)
T PF11701_consen 42 EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR--KSKDRKVQKAALELLSAAC-I- 117 (157)
T ss_dssp HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH---CTS-HHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHH-c-
Confidence 45666665554332445778888889888777777655555 58999999999982 1267778888887666554 3
Q ss_pred chhhHHHHhcCchHHHHHHhcCCc
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSN 318 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~ 318 (565)
+++++..+...+++.|..+++.+.
T Consensus 118 d~~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 118 DKSCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp SHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHcccc
Confidence 456666666677899999996543
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.72 E-value=14 Score=33.12 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~ 292 (565)
+.+..|-+.|.++ ++.+|..|+..|..+.+.... ++..++...++..|+.++... ...+..++..++..|.+.+.
T Consensus 37 ~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 5667888999998 999999999999999988755 777888888888899999763 23578899999888887753
No 277
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.72 E-value=33 Score=36.58 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCC-HHHHHHHHHHHHHhhccCchhhH-HHHhcCch
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERN-SYAQEIGAMALFNLAVNNNRNKE-LMLAAGVI 307 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~-~~~q~~A~~aL~nLa~~~~~nk~-~i~~~G~i 307 (565)
+.++-.+|++.|.++.-++...|....+......+++++.......- ..++..-+..|+-|..-....|. .+++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 45788899999999998888899988888888888877754322111 11222233333333322334454 45577999
Q ss_pred HHHHHHhcCC---------c---HHH-----HHHHHHHHhcCCC
Q 008437 308 PLLEKMISNS---------N---SHG-----AATALYLNLSFLD 334 (565)
Q Consensus 308 ~~Lv~lL~s~---------~---~~~-----~A~aaL~nLs~~~ 334 (565)
+.+...|... . .++ .|..+++|+.++.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 9999999642 0 121 2666778887763
No 278
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.38 E-value=20 Score=36.19 Aligned_cols=67 Identities=21% Similarity=0.154 Sum_probs=51.8
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
..+..|+.+|.++ ..-.+..++.+|+.|-..-+.+.. ..++.+.+|++++..+ ....|+.+|.+...
T Consensus 188 ~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 188 QILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence 5678899999998 788999999999999876554443 5667899999987543 44678888877654
No 279
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.23 E-value=10 Score=34.60 Aligned_cols=72 Identities=10% Similarity=0.008 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|.++ ++.+|..|+..|..+.+.. ......+...+++..|+.++.. ..++.++..++..+...+
T Consensus 41 ~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHH
Confidence 5677888999997 9999999999999999874 5578888899999999999975 257889999988888775
No 280
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=75.03 E-value=30 Score=41.57 Aligned_cols=261 Identities=12% Similarity=0.035 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc---CchhhHHHHhcC
Q 008437 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN---NNRNKELMLAAG 305 (565)
Q Consensus 229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~---~~~nk~~i~~~G 305 (565)
...+.+.+|++.|+.|+..-++ ...-.-++|-++.++.. .++.+|..|+.+|..+-.. -+.+-..|.-.=
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~D----s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMD----SEADVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcC----chHHHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 3567899999999999864321 12223468999999987 6788898888877765311 111222333334
Q ss_pred chHHHHHHhcCCcH---HHHHHHHHHHhcCCC----CCchhhccCCchHHHHH-----HhcCCCCHHHHHHHHHHHHHhc
Q 008437 306 VIPLLEKMISNSNS---HGAATALYLNLSFLD----DAKPIIGSSHAVPFLVE-----LCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 306 ~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~----~~k~~I~~~g~i~~Lv~-----lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.+|.|-.++..... +..-|..|..|+... +.-..+...|....... ...+..-....+-.-.....|+
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL 587 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 67888888866321 111111121121100 00000000111100000 0000000011122222233344
Q ss_pred cCCC--ChHHHHHcCchHHHhhcc-CCCChHHHHHHHHHHHHHhcCcccHHHHhc--------------CCCCHHHHHHH
Q 008437 374 TIPS--NIPNLLSAGIISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNS--------------TPGLVSGLATV 436 (565)
Q Consensus 374 ~~~~--nk~~iv~~G~v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~r~~i~~--------------~~g~v~~Lv~l 436 (565)
.+++ .|..+++. |-.|-.++ +.....+.-.-+-+..|= ....-|.++.+ ....+|.|.+-
T Consensus 588 sd~~~~Vkr~Lle~--i~~LC~FFGk~ksND~iLshLiTfLND-kDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 588 SDSPPIVKRALLES--IIPLCVFFGKEKSNDVILSHLITFLND-KDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQG 664 (1431)
T ss_pred cCCchHHHHHHHHH--HHHHHHHhhhcccccchHHHHHHHhcC-ccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHh
Confidence 4443 33344443 32333322 111111100000000000 01222333321 12456666666
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHH---HHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437 437 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL---VSISVNGSTRGRDKAQRLLMLFREQRQRD 504 (565)
Q Consensus 437 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~L---v~L~~~~s~~~k~~A~~lL~~L~~~r~~~ 504 (565)
|.++.+.+...|+.+|..||..+ .+..--++..+ .-++-..+.=+|+.+..++-...++-..-
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~-----ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLG-----LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhc-----ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 77788889999999999888643 23333333332 23566678889999999998888665443
No 281
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=72.80 E-value=37 Score=39.31 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=119.1
Q ss_pred HHHHhhccCchhhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchH--HHHHHhcCCCCHH
Q 008437 286 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVP--FLVELCKGKTEHQ 360 (565)
Q Consensus 286 aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~--~Lv~lL~~~~~~~ 360 (565)
+|+++...+.++.+.+.+.|++..+...+..- +-...+.+.+.+++...+++........+. .+-.++..-.+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 67788888888999999999999999999853 335668999999987766655554332332 2323444442336
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHH-HHHHhh
Q 008437 361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSG-LATVLD 438 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~-Lv~lL~ 438 (565)
..-.|+.+|..+..+.+. .. ....++.+...+..... .......+... ..... +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~---~~---------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TT---------------ECVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cc---------------cccchHHHHHHHHHHhhccCccceeehhh-hhcchhHHHHhc
Confidence 677788888877665433 11 11112223332222222 22222222211 22222 455554
Q ss_pred c-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC-ChhHHHHHHHHHHH
Q 008437 439 T-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STRGRDKAQRLLML 496 (565)
Q Consensus 439 ~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~-s~~~k~~A~~lL~~ 496 (565)
. ..+..+-.|++++.+++...+++++.+.+.|+++.+..+-... ...+++.|..++-.
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 3 5777889999999999998888999999999999997654332 55556666555543
No 282
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.46 E-value=1.3 Score=49.78 Aligned_cols=64 Identities=19% Similarity=0.441 Sum_probs=48.8
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHh--cCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLS--DGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 135 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~--~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 135 (565)
++.||||.+..++|+.+.|-|.||+.|+-.-|. .+...||+|+.......+.--..-..++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 567999999999999999999999999998665 3456799998655544444444556666654
No 283
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=72.42 E-value=4.2 Score=34.98 Aligned_cols=55 Identities=22% Similarity=0.510 Sum_probs=33.3
Q ss_pred CCCCCCCcccccccccccCCceecC-CC-----cccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 65 QMPLPPEELRCPISLQLMYDPVIIA-SG-----QTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 65 ~~~~~p~~f~CpI~~~~m~dPV~~~-~g-----~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
+..=+.+.+.||||+.+-..=|.+. ++ .-||..++.+-..+|.+ =|.++++++..
T Consensus 33 ~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~s 93 (113)
T PF06416_consen 33 EFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITPS 93 (113)
T ss_dssp CCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred hccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCChh
Confidence 3444457899999999999999763 33 34999999999988644 48888887654
No 284
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=72.05 E-value=13 Score=34.33 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=82.5
Q ss_pred hHHHHHHhcC-CCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc-CcccHHH
Q 008437 346 VPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA-SAAGKEE 422 (565)
Q Consensus 346 i~~Lv~lL~~-~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~ 422 (565)
+..++..|.. ...++++..|+-++..+- +..+.... ..+...+. ++.+++..-.-.+..+|..|-- .++--..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3445544443 224567777777777762 22222221 23334444 4444322233455555555444 4566667
Q ss_pred HhcCCCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC-Chh-HHHHHHHHH
Q 008437 423 MNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STR-GRDKAQRLL 494 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~-s~~-~k~~A~~lL 494 (565)
+...+|.++.++.++. ..+...+..++.+|..=|. ++.++..+.+.| ++.|-.+..++ ++. +|..|.-.|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHH
Confidence 7777899999999998 5677777777777765554 444555555554 88888888554 455 565555443
No 285
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=71.71 E-value=73 Score=31.43 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=83.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437 346 VPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 424 (565)
Q Consensus 346 i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~ 424 (565)
++.|+.-+....++......+.+|..++.++ .+...++ ..|..+...+......-++..+..|.......-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~-----~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVL-----QTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHH-----HHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 3455554444458899999999999999887 5555444 345556555555544566677777766442221
Q ss_pred cCCCCHHHHHHH--hh-----cCCHHHHHHHH---HHHHHhhcCChHHHHHHHhCCcHHHHHHhh-hcCChhHHHHHHHH
Q 008437 425 STPGLVSGLATV--LD-----TGELIEQEQAV---SCLFLLCNGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRL 493 (565)
Q Consensus 425 ~~~g~v~~Lv~l--L~-----~~s~~~~e~Av---~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~-~~~s~~~k~~A~~l 493 (565)
+.+..++.. ++ .+.....+.-+ ..+..+|...++. ..-+++.|..++ ..+++.++..|...
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222222222 11 12223333333 3677788877751 123466677777 78888899999888
Q ss_pred HHHHH
Q 008437 494 LMLFR 498 (565)
Q Consensus 494 L~~L~ 498 (565)
|..|-
T Consensus 146 l~~Lc 150 (234)
T PF12530_consen 146 LAPLC 150 (234)
T ss_pred HHHHH
Confidence 88877
No 286
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=71.60 E-value=18 Score=28.97 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCC
Q 008437 403 TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 470 (565)
Q Consensus 403 ~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 470 (565)
.+.|+.++.++++.+.+..-+-+. +.++.++++... ....+|-.|..+|.-+++..++ ++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~-~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G-~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDES-DIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG-AEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhc-CHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH-HHHHHHcC
Confidence 367999999999998888877764 899999999875 5678899999999888876653 44444433
No 287
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=69.67 E-value=47 Score=37.73 Aligned_cols=254 Identities=17% Similarity=0.165 Sum_probs=132.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHH
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 300 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~ 300 (565)
++..|.-. +.+++.+=...|.... +..-..++..-.++.|+..+.-+ + +-...+..|+.+...-+.- .
T Consensus 259 fLeel~lk-s~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g----~--a~~~~ltpl~k~~k~ld~~-e- 326 (690)
T KOG1243|consen 259 FLEELRLK-SVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFG----D--AASDFLTPLFKLGKDLDEE-E- 326 (690)
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhcc----c--cchhhhhHHHHhhhhcccc-c-
Confidence 34444443 5666655444444422 23334445555567776666542 2 1112233333332211110 1
Q ss_pred HHhcCchHHHHHHhcCCcHHHHHHHHHHHhc-CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCh
Q 008437 301 MLAAGVIPLLEKMISNSNSHGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI 379 (565)
Q Consensus 301 i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs-~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk 379 (565)
...+.+|.|+.++...+.... ..+|.++- ..+..-..+.+..++|.+..-+.+. ++..++.++.++..|+..-.-+
T Consensus 327 -yq~~i~p~l~kLF~~~Dr~iR-~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 -YQVRIIPVLLKLFKSPDRQIR-LLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred -cccchhhhHHHHhcCcchHHH-HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh
Confidence 556789999999988764322 22233332 1233345556678889999888887 8999999999998887532222
Q ss_pred HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 380 PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 380 ~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
.+....+..+-.+-.+.+..++....-+|..++..- ...+.+.-.+....+-+++.-...+..++.+|+..+..-
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF 478 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeeccccccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence 122223333333333334444444444444444321 111122122233333344444456777777777766543
Q ss_pred hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 460 EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 460 ~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
... =....++|.|+-+..+.+.-++..|-..++.+
T Consensus 479 ~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 479 DQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred chh---hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 311 11235566777677777777777777766663
No 288
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.34 E-value=2e+02 Score=33.16 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=77.3
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHH-HhcCC-cHHHHHHHHHHHhcCCCCCc
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEK-MISNS-NSHGAATALYLNLSFLDDAK 337 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~-lL~s~-~~~~~A~aaL~nLs~~~~~k 337 (565)
++..++..|-.++.+.+..++...+..|..+. ++..-....+-++....|.. +.+.. ..+..|+-+|..+-..+..
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~-d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLS-DENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHh-ccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 45555554444455578889999988887775 32222223333444444443 33433 4567788888776432111
Q ss_pred hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH-----cCchHHHhh
Q 008437 338 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-----AGIISGLQS 393 (565)
Q Consensus 338 ~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~-----~G~v~~Lv~ 393 (565)
-+..++..++.+++++++++++..| |.|++.+......+++ .|++..|+-
T Consensus 160 ---ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~IveRarDV~~anRrlvY 214 (892)
T KOG2025|consen 160 ---EECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVERARDVSGANRRLVY 214 (892)
T ss_pred ---CcccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence 1135678899999988788999865 5677777777777775 356665554
No 289
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=68.74 E-value=23 Score=32.36 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=61.0
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHHhhcc
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQ 502 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~~~r~ 502 (565)
.++..|.+.|...++.++-.|+.+|-.+..+.+ .....+.....+..|+.+... ....+|+++..+++.....=.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 356678888888999999999999988887655 466777888899999988877 789999998888888775533
No 290
>PRK14707 hypothetical protein; Provisional
Probab=68.33 E-value=3.7e+02 Score=35.12 Aligned_cols=274 Identities=17% Similarity=0.068 Sum_probs=142.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHH-HhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF-NLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~-nLa~~~ 294 (565)
.+|-.++..++.=.+.....+|+..|......+...+..|- .-.+...++-|+.. .+..+..+|+.+|. .++ .+
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~-~q~va~~lN~lsKw---p~~~~C~~a~~~lA~rl~-~~ 279 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELK-PQELGNALNALSKW---ADTPVCAAAASALAERLV-DD 279 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCC-hHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHh-hh
Confidence 56667777776532344445666667666555555555444 44466666777654 34445555555444 343 23
Q ss_pred chhhHHHHhcCchHHHHHHhcC-CcHH---HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcC-CCCHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISN-SNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-KTEHQCKLDALHAL 369 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s-~~~~---~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~-~~~~~~~~~Al~aL 369 (565)
...+..+-. -.+...++-|+. ++.. ..|..+-..|....+.+..+- .-.+..++.-|.. +.+..+.+.|....
T Consensus 280 ~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA 357 (2710)
T PRK14707 280 PGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALA 357 (2710)
T ss_pred HHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 333333322 223333344432 3322 223333444655544444443 2233444444433 32556666666666
Q ss_pred HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH-HHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHH
Q 008437 370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL-NLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQ 447 (565)
Q Consensus 370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~-nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~ 447 (565)
.-|+.+++-+..+--.|+-..|=.+.+=++...+..++..|+ .|..+.+-+..+-. .+|..++.-|.. .+..+...
T Consensus 358 ~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~--Q~van~lnalsKWPd~~~C~~ 435 (2710)
T PRK14707 358 ERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP--QGVSNALNALAKWPDLPICGQ 435 (2710)
T ss_pred HHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch--hhHHHHHHHhhcCCcchhHHH
Confidence 667777776666554444333333655456666666666665 56666777776653 567777777765 55666666
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhH-HHHHHHHHHHHH
Q 008437 448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRG-RDKAQRLLMLFR 498 (565)
Q Consensus 448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~-k~~A~~lL~~L~ 498 (565)
|+..|..--.++.+.++.+--.++...|-.+++=.+..+ ++.|..|...|.
T Consensus 436 aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 436 AVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 777665544445555554443454444444555443333 344444444444
No 291
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=68.18 E-value=5.1 Score=35.70 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=40.8
Q ss_pred CcccccccccccCCceec----CCCcccchHHHHHHHh--cCCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVII----ASGQTYERICIEKWLS--DGHSTCPKTQQKLPH 119 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~----~~g~ty~r~~I~~~~~--~~~~~cP~t~~~l~~ 119 (565)
.-+.|-||.+.-.|.--+ .||...|-.|--.-|. .-++.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 578899999999999876 4999999999888554 347899999887754
No 292
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=68.13 E-value=1.5e+02 Score=30.36 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc--h-------hhccC
Q 008437 275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK--P-------IIGSS 343 (565)
Q Consensus 275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k--~-------~I~~~ 343 (565)
.++.+++.|+.+|.-.+.-+.+... ..++.+...++.++. +..|+.+++-+....... . .....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 6889999999999888765432211 236777777765543 455777777764432211 1 12223
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhc-cCC---CChHHHHHHHHHHHHHhcCccc
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSL-AVP---GDPMWTEKSLAVLLNLAASAAG 419 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~L-l~~---~~~~~~e~al~~L~nLa~~~~~ 419 (565)
..+..+.+.|.+. +++++..|+..++.|-....... ...++..|+-+ +.. .+..++..-.-.+-..|.....
T Consensus 114 ~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 114 SLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888 88999999999999876554333 12344444442 222 3345555444556667765554
Q ss_pred HHHHhcCCCCHHHHHHHhhcCC----HHH---HHHHHHHHHHhhcCC
Q 008437 420 KEEMNSTPGLVSGLATVLDTGE----LIE---QEQAVSCLFLLCNGN 459 (565)
Q Consensus 420 r~~i~~~~g~v~~Lv~lL~~~s----~~~---~e~Av~~L~~Lc~~~ 459 (565)
....+.. .+++.+-.+..... +.. -.+.+..+..++...
T Consensus 190 ~Q~~l~~-~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~ 235 (298)
T PF12719_consen 190 NQERLAE-AFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPS 235 (298)
T ss_pred HHHHHHH-HHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChh
Confidence 4444443 67788777765422 111 335555666666543
No 293
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=68.00 E-value=84 Score=36.44 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=104.3
Q ss_pred HHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH--HHHHHhcCC
Q 008437 240 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP--LLEKMISNS 317 (565)
Q Consensus 240 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~--~Lv~lL~s~ 317 (565)
.|.....+++++...+.+.|++..+...+..- .....+..++..|.|++.. .+++.......-+. .+-.++..-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF---DNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKW 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc---cchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhc
Confidence 77888889999999999999999999999863 4567889999999999864 33333322211111 222233222
Q ss_pred c---HHHHHHHHHHHhcCCCCC------c--------hh----------hccCCchHH-HHHHhcCCCCHHHHHHHHHHH
Q 008437 318 N---SHGAATALYLNLSFLDDA------K--------PI----------IGSSHAVPF-LVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 318 ~---~~~~A~aaL~nLs~~~~~------k--------~~----------I~~~g~i~~-Lv~lL~~~~~~~~~~~Al~aL 369 (565)
+ ....|+.+|..+..+.+. + +. ......+.+ +.+++.....+.....|++++
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti 649 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTI 649 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHH
Confidence 2 123466666665443110 0 00 011123334 556666554667889999999
Q ss_pred HHhcc-CCCChHHHHHcCchHHHhhccC-CCChHHHHHHHHHH
Q 008437 370 YNLST-IPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVL 410 (565)
Q Consensus 370 ~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~-~~~~~~~e~al~~L 410 (565)
.++.. +++++..+.+.|+++.+..+-. .....+.+.+..++
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 650 KNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 99985 5568888888999998888532 22334444444443
No 294
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.00 E-value=27 Score=31.18 Aligned_cols=75 Identities=23% Similarity=0.211 Sum_probs=58.5
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCcHHHHHHhhhc---CChhHHHHHHHHHHHHHhhccc
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSISVN---GSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~v~~Lv~L~~~---~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
++..|-+.|..+++.++-.|+.+|-.+..+.+. ....+.....+..|+.+... ....+|+++..+|......-..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 566788888889999999999999988887654 56666666667778887765 5788999999888887765433
No 295
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=4.5 Score=41.48 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=41.0
Q ss_pred ceecCCCcccchHHHHHHHhcCCCCCCCCCCCC--CC---CCCcccHHHHHHHHHH
Q 008437 85 PVIIASGQTYERICIEKWLSDGHSTCPKTQQKL--PH---LCLTPNYCVKGLIASW 135 (565)
Q Consensus 85 PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l--~~---~~l~pn~~l~~~i~~~ 135 (565)
|-++.||||+|-.|+.+.+..+...||.|+++. .. ..|..|..+-..|+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 556669999999999988887788899999873 22 4577888888888775
No 296
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=67.83 E-value=15 Score=30.75 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~ 292 (565)
+.+...+..|.+. .+.+|..++..|+.|..... ....-..+++..++..|.+ +|.-+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d----~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD----EDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHHH
Confidence 3567788888887 78899999999999987654 1112224555566666665 677888899999988874
No 297
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.45 E-value=32 Score=41.29 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=100.2
Q ss_pred chHHHHHHhcCC---CCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhcc-CCCChHHHHHHHHHHHHHhcCccc
Q 008437 345 AVPFLVELCKGK---TEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAG 419 (565)
Q Consensus 345 ~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~ 419 (565)
..|.++++.++. .+++.+.+|.-||+-+..-. +-+ +-.+|.|+.++ +++++.++-+++.+|.-|+.+-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 557777777543 37888999998988775322 111 23567778855 467888888888888887764322
Q ss_pred HHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 420 r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
- ++ -.-+.|...|.+.++.+++.|+.+|.+|-.++ ++.--|.++.+..++.+++.+++..|..-.+-|+
T Consensus 995 l---ie--~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 L---IE--PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c---cc--hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 1 21 23456777888899999999999999988765 4555799999999999999999999994444433
No 298
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.42 E-value=18 Score=32.41 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+-+.|.+. ++.++..|+..|..+.+.. ......+...+++..|+.++.... ..+.++..++..+...+
T Consensus 37 ~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~--~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY--PLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHHHH
Confidence 5667888999987 9999999999999999874 557888888999999999998742 22348888888777765
No 299
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=66.85 E-value=1.5e+02 Score=30.00 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCC-CChHHHHHHHHHHHHHhcCcccH
Q 008437 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVP-GDPMWTEKSLAVLLNLAASAAGK 420 (565)
Q Consensus 343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~-~~~~~~e~al~~L~nLa~~~~~r 420 (565)
..+|..|++=|..+ +.-.+..++-++..|=+ --+|+.|.+ |.+. .++.++-.|+.+|..++.
T Consensus 186 EeaI~al~~~l~~~-SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 186 EEAINALIDGLADD-SALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 34677777777777 77778878877776633 237888888 4432 577888889999887765
Q ss_pred HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 421 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
+.++..|.+++...++.+++.|..+|-.+-.
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3678888999988888899988888865443
No 300
>PF14353 CpXC: CpXC protein
Probab=66.72 E-value=3.5 Score=36.71 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=34.9
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~ 118 (565)
+..||-|+..+.=.|-..-.-+-+....++-+.. ...+||.||..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 4689999999988886665666777777777753 2367999997753
No 301
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=65.84 E-value=98 Score=33.05 Aligned_cols=126 Identities=12% Similarity=0.109 Sum_probs=87.3
Q ss_pred CCchHHHHHHhcCCC--CHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhh-ccCC---CChHHHHHHHHHHHHHhc
Q 008437 343 SHAVPFLVELCKGKT--EHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQS-LAVP---GDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 343 ~g~i~~Lv~lL~~~~--~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~-Ll~~---~~~~~~e~al~~L~nLa~ 415 (565)
...+..|..++++.. .+.+--.|+.++..+-.++. .-..+.++|+++.+++ +... .+..+....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 445667777787652 35677888899998887665 5666677999999999 5413 355666666688889999
Q ss_pred CcccHHHHhcCCCCHHHHHHHhhcCCH----HHHHHH---HHHHHHhhcCChHHHHHHHhC
Q 008437 416 SAAGKEEMNSTPGLVSGLATVLDTGEL----IEQEQA---VSCLFLLCNGNEKCCQMVLQE 469 (565)
Q Consensus 416 ~~~~r~~i~~~~g~v~~Lv~lL~~~s~----~~~e~A---v~~L~~Lc~~~~~~~~~v~~~ 469 (565)
+..|.+.+.+. +.+..+++++.+..- ..++.| -..+-.|.++-+..+..++++
T Consensus 185 N~~Gl~~~~~~-~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 185 NNRGLEKVKSS-NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred CHHHHHHHHhc-ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999996 999999999875211 011122 224455777777666555543
No 302
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.75 E-value=96 Score=37.48 Aligned_cols=107 Identities=19% Similarity=0.086 Sum_probs=71.4
Q ss_pred hHHHhhccCCCChHHHHHHHHHHHHHhcCc----ccHHHHhcCC-CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh--
Q 008437 388 ISGLQSLAVPGDPMWTEKSLAVLLNLAASA----AGKEEMNSTP-GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-- 460 (565)
Q Consensus 388 v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~----~~r~~i~~~~-g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-- 460 (565)
+..|+.+++..+..++...+.+++|+.... +.-....... ..+..|.+.+.+.++-++-.++.+...||....
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p 393 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIP 393 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCC
Confidence 345666777777788888889999987632 2122111111 256677777778899999999999999997553
Q ss_pred -HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 461 -KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 461 -~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
+....+++ ..+.-+.+++.-+|++|..++..|..
T Consensus 394 ~~~~~eV~~-----la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 394 LGSRTEVLE-----LAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred ccHHHHHHH-----HHhcccccccHHHHHHHHHHHHHHHh
Confidence 22232222 22334556788899999999888763
No 303
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=65.66 E-value=4.5 Score=42.50 Aligned_cols=36 Identities=31% Similarity=0.623 Sum_probs=27.2
Q ss_pred ecCCCcccch-----HHHHHHHhc------------CCCCCCCCCCCCCCCCC
Q 008437 87 IIASGQTYER-----ICIEKWLSD------------GHSTCPKTQQKLPHLCL 122 (565)
Q Consensus 87 ~~~~g~ty~r-----~~I~~~~~~------------~~~~cP~t~~~l~~~~l 122 (565)
.-+|++.||| +|+-+||.. |.-+||.|+.+++-.|+
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4468888876 789999963 34579999999876553
No 304
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.74 E-value=53 Score=38.51 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=94.0
Q ss_pred CchHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChH
Q 008437 305 GVIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIP 380 (565)
Q Consensus 305 G~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~ 380 (565)
..+|.|++..... ..+.+-..+|.++-.+ --+..+.. ...+|.|++-|.-. |..++..++.+|.-+....+.-.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~-vP~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTN-VPKQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhc-CCHHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccccc
Confidence 5788888877632 2233344444443222 22344443 35778888888877 88888889988887765443322
Q ss_pred HHHHcCchHHHhhccCCCC---hHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 381 NLLSAGIISGLQSLAVPGD---PMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 381 ~iv~~G~v~~Lv~Ll~~~~---~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
.---.-.||.++.|-.+.+ ..+++.|+..|..|.. .+..+-.-. .+.++..|.+.|++.-..+|+.|+.+=
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 2222347788888765543 6788999999999988 333322222 247888899999887778899888764
No 305
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.29 E-value=1.1e+02 Score=35.00 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
.-+++...+. +..+|.+.+..|+.+..+.. -+..-+-++..+.|..-|.+ ..+.++..|+.+|..+- +++.+-
T Consensus 88 ~hlLRg~Esk-dk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~D----rep~VRiqAv~aLsrlQ-~d~~de 160 (892)
T KOG2025|consen 88 YHLLRGTESK-DKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKD----REPNVRIQAVLALSRLQ-GDPKDE 160 (892)
T ss_pred HHHHhcccCc-chhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhc----cCchHHHHHHHHHHHHh-cCCCCC
Confidence 4445555554 78899999999999985332 23333445666666665555 56789999999998884 222111
Q ss_pred HHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCC
Q 008437 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDA 336 (565)
Q Consensus 299 ~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~ 336 (565)
+..++..+..++++....+.--++|.+++.....
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsT 194 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNST 194 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhccCccc
Confidence 1234666777777665555555566666655443
No 306
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.27 E-value=26 Score=31.93 Aligned_cols=72 Identities=8% Similarity=0.065 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+-+..+.+.|.+. ++.++..|+..|..+.+... .....++...++..|++++... .+..+++..+..|...+
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHH
Confidence 4567888999987 99999999999999998765 4777888899999999999874 57889999888888775
No 307
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.16 E-value=2e+02 Score=32.29 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=77.1
Q ss_pred chHHHHHHhcCCcHH-HHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCC---CCHHHHHHHHHHHHHhc----cCC
Q 008437 306 VIPLLEKMISNSNSH-GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK---TEHQCKLDALHALYNLS----TIP 376 (565)
Q Consensus 306 ~i~~Lv~lL~s~~~~-~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs----~~~ 376 (565)
++..|...+.++... ..|+.++..+... ... ....+..+..|+.++ .++.+...|+-++.+|. .+.
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 577777777776422 2334334333211 111 124567777777754 24456666777666664 333
Q ss_pred CChHHHHHcCchHHHhhccC----CCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhh-c--CCHHHHHHHH
Q 008437 377 SNIPNLLSAGIISGLQSLAV----PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-T--GELIEQEQAV 449 (565)
Q Consensus 377 ~nk~~iv~~G~v~~Lv~Ll~----~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~-~--~s~~~~e~Av 449 (565)
+.+...+-...++.|.+.+. ..+..-+-.++.+|.|+.. +..+..|..++. . .+...+-.|+
T Consensus 433 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av 501 (574)
T smart00638 433 PSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAI 501 (574)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 33322233346666666332 2344444556777777643 345566666665 2 3567899999
Q ss_pred HHHHHhhcCCh
Q 008437 450 SCLFLLCNGNE 460 (565)
Q Consensus 450 ~~L~~Lc~~~~ 460 (565)
.+|..++...+
T Consensus 502 ~Alr~~a~~~p 512 (574)
T smart00638 502 LALRNLAKRDP 512 (574)
T ss_pred HHHHHHHHhCc
Confidence 99998875443
No 308
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=63.94 E-value=17 Score=26.97 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=19.6
Q ss_pred CcccccccccccCCceecCCCcccchHHHHHHHhc-CCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQ 115 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~ 115 (565)
+.|.||.|++-+ |- ..+.+.+.+.+..+ ..-.||+|..
T Consensus 1 ~~f~CP~C~~~~-~~------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGF-SE------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCcc-CH------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 468899977622 11 12223333333322 2356999964
No 309
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=63.81 E-value=6.6 Score=40.37 Aligned_cols=60 Identities=13% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 135 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 135 (565)
..+-|.||||.+.|.-|+-= .-||.-|-.|=. +-...||.|+.++.+ +.++.+.+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 34668899999999999644 369999888843 234569999988763 3567777776654
No 310
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=63.46 E-value=36 Score=30.97 Aligned_cols=74 Identities=14% Similarity=-0.015 Sum_probs=59.5
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHHHhhh-cCChhHHHHHHHHHHHHHhhc
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~~r 501 (565)
.++..|.+.|..+++.++-.|+.+|-.+..+. ......+...+.+..|+.+.. ...+.+|+++..++......=
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45677888888899999999999998887764 456777888899999988776 467789999888888877543
No 311
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=63.40 E-value=5.7 Score=29.80 Aligned_cols=27 Identities=26% Similarity=0.695 Sum_probs=23.5
Q ss_pred ccccccccccc--CCceecC--CCcccchHH
Q 008437 72 ELRCPISLQLM--YDPVIIA--SGQTYERIC 98 (565)
Q Consensus 72 ~f~CpI~~~~m--~dPV~~~--~g~ty~r~~ 98 (565)
.-.|++|++.| .|.+++. ||-.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 34699999999 8888874 999999999
No 312
>PLN02189 cellulose synthase
Probab=63.35 E-value=5.9 Score=46.88 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=37.3
Q ss_pred cccccccc-----ccCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQ-----LMYDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~-----~m~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
-.|.||++ .+-+|-+.+ ||--.||.|.|-=-++|+..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999996 455676653 88889999997767789999999998775
No 313
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.26 E-value=2.4e+02 Score=35.35 Aligned_cols=262 Identities=13% Similarity=0.111 Sum_probs=124.7
Q ss_pred hHHHHHH-HHHhcCCCHHHHHHHHHHHHHHhccCccchhhhh-ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHh-hc
Q 008437 216 ERYQDFL-NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCERNSYAQEIGAMALFNL-AV 292 (565)
Q Consensus 216 e~i~~ll-~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nL-a~ 292 (565)
..+..++ ..+.+. ++..|..++-=|-.+...-.+.+.... -.....++..+|.. +|.-.|+.|.+-|.-. ..
T Consensus 817 ~~~~~~l~~~~~s~-nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd----~dEf~QDvAsrGlglVYel 891 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSP-NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD----NDEFSQDVASRGLGLVYEL 891 (1702)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc----cHHHHHHHHhcCceEEEec
Confidence 3444444 444454 777766544333333333222233222 24555788888876 6777888887654321 11
Q ss_pred cCchhhHHHHhcCchHHHHHHhcCCcHH------------------------HHHHHHHHHhcCCCCCchhhccCCchHH
Q 008437 293 NNNRNKELMLAAGVIPLLEKMISNSNSH------------------------GAATALYLNLSFLDDAKPIIGSSHAVPF 348 (565)
Q Consensus 293 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~~------------------------~~A~aaL~nLs~~~~~k~~I~~~g~i~~ 348 (565)
++...++.++ ..|++-|..|... ....--|+||+ .-+++...|-.
T Consensus 892 gd~~~k~~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LA------Sdl~qPdLVYK 960 (1702)
T KOG0915|consen 892 GDSSLKKSLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLA------SDLGQPDLVYK 960 (1702)
T ss_pred CCchhHHHHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHH------hhcCChHHHHH
Confidence 2444555544 3455555333110 00111222332 12333444445
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH-hcCc-ccHHHHhcC
Q 008437 349 LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL-AASA-AGKEEMNST 426 (565)
Q Consensus 349 Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL-a~~~-~~r~~i~~~ 426 (565)
..+|-++...-..++-|+--+..|+.....+..=.---.||.|.+.-.+++..++. |+.-+||. .... ........
T Consensus 961 FM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~n- 1038 (1702)
T KOG0915|consen 961 FMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLN- 1038 (1702)
T ss_pred HHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHH-
Confidence 55554443122233444443444433221110000123667777755567777655 55555554 3332 22222222
Q ss_pred CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHH----HhhhcCChhHHHHHHHHHHHHHhh
Q 008437 427 PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV----SISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 427 ~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv----~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
..+.-|+.-|.+..=+++|.++.+|..|-++.+. ..+.+. +|.|. ..+.+-.+-+|+.|-++.+.|...
T Consensus 1039 -eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~--lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1039 -EILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEK--LPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred -HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444445567999999999999987651 122221 44443 333344555666666666666553
No 314
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.25 E-value=36 Score=37.08 Aligned_cols=114 Identities=10% Similarity=-0.016 Sum_probs=68.9
Q ss_pred CCchHHHHHHhc----CCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCc
Q 008437 343 SHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 343 ~g~i~~Lv~lL~----~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~ 417 (565)
.|.+..++..|. ++ +...+..|++.|.|++..-..+.+-...-.+..++. |.++.+..++-.++..|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 455555554443 33 567888999999999876433333333335556666 666666777778887777766544
Q ss_pred ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
.++.-.----...-.+..+.++.++..+-.|...+..|+.
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 4333221000233345555667888899988877666553
No 315
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.63 E-value=2e+02 Score=29.96 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=112.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc-cCchh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV-NNNRN 297 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~-~~~~n 297 (565)
..++..+.+ +...+..+...++.+..+. +..|.+.|.+ ....++..++..|..+.. .....
T Consensus 30 ~~~l~~ls~--~~~~~~~g~~l~~~iL~~~------------~k~lyr~L~~----~~~~~~~~~LrLL~~iv~f~~g~~ 91 (330)
T PF11707_consen 30 ALLLKKLSS--DLSFQSYGLELIRSILQNH------------LKLLYRSLSS----SKPSLTNPALRLLTAIVSFDGGAL 91 (330)
T ss_pred HHHHHHhcc--chhHHHHHHHHHHHHHHHH------------HHHHHHHhCc----CcHHHHHHHHHHHHHHHccCCHHH
Confidence 334444443 3335555555555555321 5666677766 456667778888888865 33234
Q ss_pred hHHHHhc-Cc-hHHHHHHhcCC---------------cHHHHHHHHHHHhcC-C-CCCchhh-ccCCchHHHHHHhcCCC
Q 008437 298 KELMLAA-GV-IPLLEKMISNS---------------NSHGAATALYLNLSF-L-DDAKPII-GSSHAVPFLVELCKGKT 357 (565)
Q Consensus 298 k~~i~~~-G~-i~~Lv~lL~s~---------------~~~~~A~aaL~nLs~-~-~~~k~~I-~~~g~i~~Lv~lL~~~~ 357 (565)
...+... +. .+.|.+++... +.+.+.+..+..+-. . ...+..+ ...+.+..+++-|..+
T Consensus 92 a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D- 170 (330)
T PF11707_consen 92 AREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD- 170 (330)
T ss_pred HHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-
Confidence 4444443 43 56666776321 233444544444322 2 3344444 4467789999999887
Q ss_pred CHHHHHHHHHHHHH-hccCC----CChHHHHHcCchHHHhhccCCCCh----HHHHHHHHHHHHHhcCc
Q 008437 358 EHQCKLDALHALYN-LSTIP----SNIPNLLSAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAASA 417 (565)
Q Consensus 358 ~~~~~~~Al~aL~n-Ls~~~----~nk~~iv~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~~~ 417 (565)
+.++....+.+|.. +..+. ..|..+....++..|+.+....+. .+.+.+-..|..+|.++
T Consensus 171 ~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 171 PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 89999999999995 44443 255666677888999997765555 78899999999999744
No 316
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.81 E-value=24 Score=31.82 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHH--HHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSY--AQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~--~q~~A~~aL~nLa 291 (565)
+.+..+-+.|.++ ++.+|..|+..|..+.++. +..+..++...++..|..++.+.. .+.. +++.++..|...+
T Consensus 42 ea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~--~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK--TDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT--THHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC--CCchhHHHHHHHHHHHHHH
Confidence 5567788999997 9999999999999999876 568888999999999999987632 2222 7888887777664
No 317
>PLN02195 cellulose synthase A
Probab=61.57 E-value=6.4 Score=46.30 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=37.6
Q ss_pred ccccccc-----ccCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 74 RCPISLQ-----LMYDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 74 ~CpI~~~-----~m~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
.|-||++ .+-+|-+.+ ||.-.||.|.|-=-++|+..||.|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5889986 566887764 89999999997666789999999998887
No 318
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=61.34 E-value=18 Score=30.31 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437 390 GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 390 ~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
..+..+.++.+.++..++..|..|..... ..+...++.+..+...|.+.++-+--+|+..|..||...+
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34444567778899999999999998776 2233333566777777888889999999999999997665
No 319
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=60.80 E-value=2.7 Score=50.24 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=38.2
Q ss_pred CCcccccccccccC-CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 008437 70 PEELRCPISLQLMY-DPVIIASGQTYERICIEKWLSDGHSTCPKTQ 114 (565)
Q Consensus 70 p~~f~CpI~~~~m~-dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~ 114 (565)
-..+.|+||+++|+ -=-+.-|||-||-.|++-|+.. +..||.|+
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 35579999999999 5557789999999999999986 67899996
No 320
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=60.61 E-value=31 Score=32.11 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=66.9
Q ss_pred chHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-CCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCC---hH
Q 008437 387 IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN---EK 461 (565)
Q Consensus 387 ~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~---~~ 461 (565)
.+..+..++.+.+...+..++.++..++... +.+.+.++ ...+..|+.+|.. ..+...+.|+.+|..|...- ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444555777777777777777777777632 24444343 2356777888876 56678999999998877533 33
Q ss_pred HHHHHHhC---CcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 462 CCQMVLQE---GVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 462 ~~~~v~~~---G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..+++... ++++.++.+... ....+.+..+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 34444433 445555555554 455566666666644
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=60.20 E-value=58 Score=28.89 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=51.1
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHh-CCcHHHHHHhhh-----cC---ChhHHHHHHHHHHHHH
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQ-EGVIPALVSISV-----NG---STRGRDKAQRLLMLFR 498 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~-~G~v~~Lv~L~~-----~~---s~~~k~~A~~lL~~L~ 498 (565)
.+..|.+-|.+.++.++-.|+.+|-.||.... .++..+.. .-+|..+..... .| ...+|..|..++..+-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 34567778888899999999999999998664 44444443 355666655544 22 4678999999999876
Q ss_pred h
Q 008437 499 E 499 (565)
Q Consensus 499 ~ 499 (565)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 322
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.05 E-value=10 Score=43.08 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=34.7
Q ss_pred CCCCCCCCcccccccccccCCce----ecC---CCcccchHHHHHHHhc
Q 008437 64 GQMPLPPEELRCPISLQLMYDPV----IIA---SGQTYERICIEKWLSD 105 (565)
Q Consensus 64 ~~~~~~p~~f~CpI~~~~m~dPV----~~~---~g~ty~r~~I~~~~~~ 105 (565)
+.....++.-.|++|..-+.+|| +.+ |++.+|-.||..|.+.
T Consensus 88 E~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 88 EVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred ccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 34556678899999999999987 334 8999999999999874
No 323
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=59.66 E-value=1.2e+02 Score=35.63 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=90.0
Q ss_pred CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
.|.+-.++++...+.+..+...|+..|-.|+..-..-..=...++.+.|++-+.+....+++.++.++...+...
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~----- 367 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST----- 367 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----
Confidence 355566666665555788888899888888753322222223467778888555666677777777776665511
Q ss_pred HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437 423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL 494 (565)
......+.+...+..+++..+..+...|........ .....-.-.+++|.++....+.+..+|..|..++
T Consensus 368 --~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 368 --PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred --cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 111345667777888899888888777765544332 1111111235677777777777777777776544
No 324
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=59.26 E-value=63 Score=29.96 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=78.8
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
..++.|+++|+++.+...+..++++|..|=.-+..+.+.+..+.-.. ...+.+....... +.+....+ .-++.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~---l~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDIS---LPMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhH---HhhccCCC-chHHH
Confidence 35677888888876789999999999999766665555433211100 0001111111111 11111111 22222
Q ss_pred hcCCCCHHHHHHHhhcCCH-HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437 424 NSTPGLVSGLATVLDTGEL-IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~~~s~-~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~ 495 (565)
.-. -++..|+.+|++.+- .-...++.++..+...-.-.+ .-.=.-++|.++....++++..++---.-|.
T Consensus 83 y~~-vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 83 YPT-VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 222 467788888876433 234466777777764322112 2222467899999998888877776443333
No 325
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=1e+02 Score=36.85 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=93.0
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhcCcccHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
++++.|+..|++. +..++-.|++-+.-+....+ ..+++ .+|...++++... +...---++-+|+.|+...--...
T Consensus 341 ~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 5777888888887 88899999999999987655 33333 3666677755432 233334677788888874433333
Q ss_pred HhcCCCCHHHHHHHhhc--------CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHH-----HhhhcCChhHHHH
Q 008437 423 MNSTPGLVSGLATVLDT--------GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV-----SISVNGSTRGRDK 489 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~--------~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv-----~L~~~~s~~~k~~ 489 (565)
.+. .+++.+++-|.- ....+++.|+-++|.+.+..... .+ .+++..|. .-+-+..-..|+.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l-~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DL-KPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hh-hHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 332 356666655531 35678999999999999865421 11 12333332 3344567778888
Q ss_pred HHHHHHHHH
Q 008437 490 AQRLLMLFR 498 (565)
Q Consensus 490 A~~lL~~L~ 498 (565)
|..+|.-+-
T Consensus 491 AsAAlqE~V 499 (1133)
T KOG1943|consen 491 ASAALQENV 499 (1133)
T ss_pred HHHHHHHHh
Confidence 988888765
No 326
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=58.62 E-value=1.1e+02 Score=31.26 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=73.8
Q ss_pred CchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc-CChHHH
Q 008437 386 GIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN-GNEKCC 463 (565)
Q Consensus 386 G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~-~~~~~~ 463 (565)
+.+..|+. -+.+.+..+++.++..|...|.-+. .+.. ..++.+...+..+++.++..|+.++..+.. ++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 56666664 6677888999999999999888654 2222 346777888877899999999999987654 332221
Q ss_pred HHH-------HhCCcHHHHHHhhhcCChhHHHHHHHHHHH
Q 008437 464 QMV-------LQEGVIPALVSISVNGSTRGRDKAQRLLML 496 (565)
Q Consensus 464 ~~v-------~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~ 496 (565)
... -...++..+...+.+.++.++..|+.-+-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCK 140 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 123456667778888888888888865555
No 327
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.53 E-value=9.7 Score=30.08 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 008437 89 ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 127 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~ 127 (565)
.=-+|||..|-+.-|. ..||.|+-.|.....+|.-.
T Consensus 26 tfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~ 61 (84)
T COG3813 26 TFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAK 61 (84)
T ss_pred EEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHH
Confidence 3468999999987774 47999998887666777543
No 328
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=57.46 E-value=1.6e+02 Score=34.44 Aligned_cols=264 Identities=15% Similarity=0.059 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
-+..++..+... +..-+.++...+.+++-...+.|. ..-++|.+-..+. .+.+++..++.-+.++.. ..
T Consensus 83 ~ia~l~~e~~~~-di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~~-----~~dev~~~~a~~~~~~~~-~v- 151 (759)
T KOG0211|consen 83 PIAVLIDELSNT-DIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAED-----DEDEVLLDLAEQLGTFLP-DV- 151 (759)
T ss_pred cHHHHhhccCch-hhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhcc-----chhHHHHHHHHHhcccch-hc-
Confidence 344555555544 555666677777776543333333 2223444444442 334555555555555542 11
Q ss_pred hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.-..+ ..-..+.+-.+.....+ +++++-.+...+.. ...+. ..-+-+|+..|..+.-.+.+..++++...+.
T Consensus 152 ~~~~~-~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~~~d~~~sr~sacglf~~~~ 226 (759)
T KOG0211|consen 152 GGPEY-AHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLATGDWFQSRLSACGLFGKLY 226 (759)
T ss_pred cchhH-HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHccchhhhhcchhhhhhhHHhc
Confidence 11111 11122333333322222 34455555444322 11111 0112233333333311223444445444444
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
..-.. ..++...-+..-++..+.++.++..+..-+.+++..-.. ++... +.++.+.+++......+++.|+..+.
T Consensus 227 ~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s-~v~~~~~~L~~DdqdsVr~~a~~~~~ 301 (759)
T KOG0211|consen 227 VSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKS-EVLPTLIQLLRDDQDSVREAAVESLV 301 (759)
T ss_pred cCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHh-hccHHHhhhhhcchhhHHHHHHHHHH
Confidence 32221 223333333333466666677777777777777664333 44443 78888888888888888888888877
Q ss_pred HhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437 454 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
++...-.... - ...-+.+.++....+++.+.+........-|...-..
T Consensus 302 ~l~~l~~~~~-d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~ 349 (759)
T KOG0211|consen 302 SLLDLLDDDD-D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP 349 (759)
T ss_pred HHHHhcCCch-h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc
Confidence 7654221000 1 1123466777788888888887777666666554433
No 329
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=56.85 E-value=3e+02 Score=30.15 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC-c--HHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHH
Q 008437 277 SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-N--SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVE 351 (565)
Q Consensus 277 ~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-~--~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~ 351 (565)
.+-++.|+.-|..+...+....+.=.-...+..++++|+.. + .++.|..+|..+...... .+.+ .-+|..+++
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLE 378 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHH
Confidence 34445555545555433322222211123456677777652 2 245577777666543221 1221 124445555
Q ss_pred HhcCCCCHHHHHHHH-HHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCc--ccHHHHhcCC
Q 008437 352 LCKGKTEHQCKLDAL-HALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASA--AGKEEMNSTP 427 (565)
Q Consensus 352 lL~~~~~~~~~~~Al-~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~--~~r~~i~~~~ 427 (565)
.-.+. ...+...|. .++.-|+++..-.. |..+.. ++. .+....-.++..+..|+..- +.-..++ +
T Consensus 379 aa~ds-~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~ 447 (516)
T KOG2956|consen 379 AAKDS-QDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLL--P 447 (516)
T ss_pred HHhCC-chhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhh--h
Confidence 44444 333333333 33444555444322 222333 222 33333334444455555422 2222233 3
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
...|.+++--.+.+..++..||-+|..+-.
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 678888888888899999999999987643
No 330
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=12 Score=39.57 Aligned_cols=59 Identities=17% Similarity=0.453 Sum_probs=38.2
Q ss_pred CcccccccccccCC---ceecCCCcccchHHHHHHHh----cCC---CCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437 71 EELRCPISLQLMYD---PVIIASGQTYERICIEKWLS----DGH---STCPKTQQKLPHLCLTPNYCVKGLIA 133 (565)
Q Consensus 71 ~~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~----~~~---~~cP~t~~~l~~~~l~pn~~l~~~i~ 133 (565)
.-|.|-||.+-..- =+-++|+|.||+.|...+|. +|. -.||-++= .....|+ .+++++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~g-~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPPG-QVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCch-HHHHHHH
Confidence 45899999965543 33679999999999999986 343 23665431 2223333 5666664
No 331
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=56.21 E-value=1.5 Score=34.73 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
+..||.|.+. +.-..|+.+|-.|-..+.. ...||.|+++|.
T Consensus 1 e~~CP~C~~~----L~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQE----LEWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SB----EEEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCc----cEEeCCEEECcccccccee--cccCCCcccHHH
Confidence 4679999885 3444578888877554332 356999999875
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.16 E-value=8.6 Score=44.20 Aligned_cols=41 Identities=24% Similarity=0.564 Sum_probs=35.0
Q ss_pred CcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQ 115 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~ 115 (565)
..-.|..|.-.+.=|++- -|||.|-++|.+ ++...||.|..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 446899999999999875 799999999988 56788999964
No 333
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.96 E-value=53 Score=29.77 Aligned_cols=73 Identities=19% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHHHhhhc------CChhHHHHHHHHHHHHHhh
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVN------GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~------~s~~~k~~A~~lL~~L~~~ 500 (565)
.++..|.+.|.+.++.++-.|+.+|-.+..+. ......+...+.+.-|+.+... ....+|++...+|+.-...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999998887754 4567778888888889888753 4678999888888776644
No 334
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.71 E-value=50 Score=29.96 Aligned_cols=75 Identities=8% Similarity=0.074 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccc--cCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~--~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|.+. ++.++..|+..|..+.+.. ..++..++..+++..|++++.... ...+..++...+..|...+
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4567888999988 8999999999999998764 458888999999999999996311 1246788888888877765
No 335
>PLN02436 cellulose synthase A
Probab=55.58 E-value=9.7 Score=45.26 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=37.2
Q ss_pred cccccccc-----ccCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQ-----LMYDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~-----~m~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
-.|.||++ ..-||-+.+ ||--.||.|.+-=-++|+..||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999984 355676664 88889999997767789999999997765
No 336
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=54.96 E-value=6.2 Score=36.11 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=23.5
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHh-cCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS-DGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~-~~~~~cP~t~~~l~~ 119 (565)
...|.||- ||++|.-.-...... .|..+||.|+.+|..
T Consensus 97 ~~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 56899995 555555322222221 245889999998754
No 337
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.93 E-value=5.2 Score=39.33 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=29.2
Q ss_pred CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 83 YDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 83 ~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
.||. +++|+|.||-.|...-. ...||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 6666 56899999988854322 2389999999776666665
No 338
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=54.73 E-value=1.8e+02 Score=32.93 Aligned_cols=92 Identities=21% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCchHHHHHHhc----CCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCC---ChHHHHHHHHHHHHHhc
Q 008437 343 SHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG---DPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 343 ~g~i~~Lv~lL~----~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~---~~~~~e~al~~L~nLa~ 415 (565)
...++.|...|. .+ +...+..++.||.|+-. ...++.|..++... ...++-.|+.+|..++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 346677777766 33 66788899999999843 23777788855443 56667778888887754
Q ss_pred CcccHHHHhcCCCCHHHHHHHhhc--CCHHHHHHHHHHHH
Q 008437 416 SAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLF 453 (565)
Q Consensus 416 ~~~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av~~L~ 453 (565)
... . .+.+.|..++.+ .+.++|-.|..+|.
T Consensus 554 ~~~--~------~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 554 HCP--E------KVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp T-H--H------HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred cCc--H------HHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 321 1 233456677665 34455555554443
No 339
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.61 E-value=1.3e+02 Score=35.59 Aligned_cols=134 Identities=15% Similarity=0.081 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCCCCchhhccCCchHHHHHHhc------CC-CCHHHHHHHHHHHHHhccC---CCChHHHHHcCchHHHh
Q 008437 323 ATALYLNLSFLDDAKPIIGSSHAVPFLVELCK------GK-TEHQCKLDALHALYNLSTI---PSNIPNLLSAGIISGLQ 392 (565)
Q Consensus 323 A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~------~~-~~~~~~~~Al~aL~nLs~~---~~nk~~iv~~G~v~~Lv 392 (565)
|+..+...++....|..+ .+.++.++.+|. .. .++..+.-|+.++.+|+.- ..--....+.=++..+.
T Consensus 391 Aa~~~l~~~~~KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHhcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 444444444433333333 478899999997 22 2567788899999988831 12222344445666777
Q ss_pred hccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCCh
Q 008437 393 SLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 393 ~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
..+.+...-++..|+++|..++.-.---..+.. .++......|. +.+--++-.|+-+|..+-.+..
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 777777778889999999999952211111111 23444455555 4445567777777777665554
No 340
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=54.45 E-value=2.2e+02 Score=27.97 Aligned_cols=127 Identities=16% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHH--HHHHHHHHhcCCCCCchhhccCCchHHHHHH
Q 008437 275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG--AATALYLNLSFLDDAKPIIGSSHAVPFLVEL 352 (565)
Q Consensus 275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~--~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~l 352 (565)
.++..+...+.+|..++.+++.+... ++..|..+...+...- .+...+..+-..+ .+. . +.+..++..
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~-f---~~L~~~L~~ 82 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRH-F---PFLQPLLLL 82 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chH-H---HHHHHHHHH
Confidence 67889999999999998654122222 2444555555544332 2333333332211 111 0 344444433
Q ss_pred --hc------CC-CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhcc-CCCChHHHHHHHHHHHHHhc
Q 008437 353 --CK------GK-TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA-VPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 353 --L~------~~-~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~ 415 (565)
++ ++ ...+.......++..+|...++ .-...++.|..++ .+.+...+..++..|..||.
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11 11 1334445555678888876665 2233566777777 67788888999999999993
No 341
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=53.63 E-value=98 Score=26.33 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHH
Q 008437 421 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 496 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~ 496 (565)
..+......+..|++.........++.++..|..|...+. ..+.+.+-|++.-|-.+-.+-++..+...-.+|..
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3344333556666666666666689999999999998876 46677788999998888888888888777777653
No 342
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.53 E-value=95 Score=38.54 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=72.6
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGK 420 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r 420 (565)
+.+..++..|.+. ...++..|+++|.++..-+. -...-|+.|+...+. +....+++.|+.++..... .++..
T Consensus 816 ~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~----DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN----DSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc----cchhHHHHHHHHHHhhhhhccHHHH
Confidence 4667777788877 78899999999999987554 233344455444443 4556888999999985544 23333
Q ss_pred HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437 421 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
.++. ..+.+-+.+.+-.++..++.+|..+|...+
T Consensus 891 ~qyY------~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 891 FQYY------DQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHH------HHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 3322 234455556678899999999999997664
No 343
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.28 E-value=9.4 Score=39.67 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=36.7
Q ss_pred cccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
--.|=||+.=-+|=|++||-|. .|..|-+.. .-.+..||+|++++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchHh
Confidence 3679999999999999999987 688886543 2224569999998753
No 344
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=53.01 E-value=10 Score=25.25 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.2
Q ss_pred CCCCCCCCCCC
Q 008437 106 GHSTCPKTQQK 116 (565)
Q Consensus 106 ~~~~cP~t~~~ 116 (565)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35689999864
No 345
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=52.80 E-value=1.9e+02 Score=31.69 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=85.2
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHH-HHHHHHhcCcccHHHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSL-AVLLNLAASAAGKEEM 423 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al-~~L~nLa~~~~~r~~i 423 (565)
.+..++++|.+..+...++-|+++|..++.+...+-.=-..-+|..+++.-++.+..+...|. .++.-|+.+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P----- 404 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP----- 404 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc-----
Confidence 456677888773377789999999999998765433222244677777755554444433333 33444444321
Q ss_pred hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHH--hCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVL--QEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~--~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..+|..+..+|.+.+...--.++..+-.|+.+=. ...+. -..+.|.++.--.+.+.-+|..|+-.|-.+-
T Consensus 405 ---~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 405 ---LQCIVNISPLILTADEPRAVAVIKMLTKLFERLS--AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC--HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 1345566666666555444455556666665432 11222 2366777777777777888888886665543
No 346
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.03 E-value=67 Score=28.71 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=55.9
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHHHhhhcC-C-hhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVNG-S-TRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~~-s-~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|..+++.++-.|+.+|-.+..+. ......+...+.+..|+.+.... + +.+++++..++......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566888888899999999999998888764 45677778888899898876653 3 33888888888776654
No 347
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=51.69 E-value=3e+02 Score=28.63 Aligned_cols=162 Identities=11% Similarity=0.016 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCcc-chhhhhc-cCCHHHHHHHhcccccCCC---------HHHHHHHH
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEE-ARVFTGA-NGFVVALLRFLESAVCERN---------SYAQEIGA 284 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~-~~~~-~r~~i~~-~G~i~~Lv~lL~s~~~s~~---------~~~q~~A~ 284 (565)
....+-..|.+. .......+++-|..++. .+.. .+..+.. .=-.+.|.+++........ +.++...+
T Consensus 57 ~~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 57 HLKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 445566777776 66777789999999987 5434 4444444 3345667777753221111 26777888
Q ss_pred HHHHHhh-ccCchhhHHHHhc-CchHHHHHHhcCCc--HHHHHHHHHHH-hcCCC----CCchhhccCCchHHHHHHhcC
Q 008437 285 MALFNLA-VNNNRNKELMLAA-GVIPLLEKMISNSN--SHGAATALYLN-LSFLD----DAKPIIGSSHAVPFLVELCKG 355 (565)
Q Consensus 285 ~aL~nLa-~~~~~nk~~i~~~-G~i~~Lv~lL~s~~--~~~~A~aaL~n-Ls~~~----~~k~~I~~~g~i~~Lv~lL~~ 355 (565)
..++.+- ..+...+..+.+. +.+..+.+-|.... .......+|.. +...+ ..|..+-...++..|+.+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7766653 3345566666654 56777777776532 23445555543 22222 244555556788999998776
Q ss_pred CCCH----HHHHHHHHHHHHhccCCCChH
Q 008437 356 KTEH----QCKLDALHALYNLSTIPSNIP 380 (565)
Q Consensus 356 ~~~~----~~~~~Al~aL~nLs~~~~nk~ 380 (565)
. ++ .+.+.+-..|..+|.++.+-.
T Consensus 216 ~-~~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 216 D-GEDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred c-CCcccchHHHHHHHHHHHHhcCCCccc
Confidence 6 55 788899999999997765433
No 348
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=51.46 E-value=11 Score=38.10 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=32.0
Q ss_pred cccccccccc----cCCceecCCCcccchHHHHHHHhcCCCCCCCCCC
Q 008437 72 ELRCPISLQL----MYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQ 115 (565)
Q Consensus 72 ~f~CpI~~~~----m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~ 115 (565)
++-||||.+- +.+|..++|||+--..|.+....++ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4559999865 4577788999987655555555556 99999965
No 349
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.34 E-value=3.3 Score=41.61 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=29.7
Q ss_pred CcccccccccccCCceecCCCccc-chHHHHHHHhcCC--CCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVIIASGQTY-ERICIEKWLSDGH--STCPKTQQK 116 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~ty-~r~~I~~~~~~~~--~~cP~t~~~ 116 (565)
.+.+|-||++.-.|=|.++|||.. |-.| |. ..||+|++.
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHH
Confidence 388999999999999999999975 2222 32 258888764
No 350
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=51.19 E-value=82 Score=29.26 Aligned_cols=106 Identities=12% Similarity=0.094 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHh---hc
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNL---AV 292 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nL---a~ 292 (565)
+..+...|++. +...|..++..++.....++ ...+.+ .-.+..|+.+|+.. +...+.+.++.+|..| ..
T Consensus 27 ~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~---~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 27 VTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP---DPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Confidence 45667777776 88999999999999986542 455544 33668888899873 4556667776666555 33
Q ss_pred cCchhhHHHHhc---CchHHHHHHhcCCcHHHHHHHHHHH
Q 008437 293 NNNRNKELMLAA---GVIPLLEKMISNSNSHGAATALYLN 329 (565)
Q Consensus 293 ~~~~nk~~i~~~---G~i~~Lv~lL~s~~~~~~A~aaL~n 329 (565)
+.++..+.+... +.++.++.+++.+...+.++.+|..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ 140 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALAT 140 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334434444332 3455556655543333444444443
No 351
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=51.00 E-value=11 Score=44.90 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=36.4
Q ss_pred ccccccc-----ccCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 74 RCPISLQ-----LMYDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 74 ~CpI~~~-----~m~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
.|.||++ ..-+|-+.+ ||--.||.|.|-=-++|+..||.|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 7999985 355676664 88889999997667789999999987765
No 352
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=50.84 E-value=4.4 Score=39.53 Aligned_cols=45 Identities=24% Similarity=0.598 Sum_probs=35.2
Q ss_pred Ccccccccc-cccCCce--ec--C-CCcccchHHHHHHHhcCCCCCC--CCCC
Q 008437 71 EELRCPISL-QLMYDPV--II--A-SGQTYERICIEKWLSDGHSTCP--KTQQ 115 (565)
Q Consensus 71 ~~f~CpI~~-~~m~dPV--~~--~-~g~ty~r~~I~~~~~~~~~~cP--~t~~ 115 (565)
.+-.||||. +.+-+|= ++ | |=|..|-+|+.+-|..|...|| -|++
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 456899998 5555563 22 4 9999999999999999999999 4543
No 353
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.64 E-value=15 Score=39.36 Aligned_cols=69 Identities=12% Similarity=0.246 Sum_probs=42.0
Q ss_pred cccccccc-cccCCce---ecCCCcccchHHHHHHHhc-----CCCCCCC--CCCCCCCC---CCcccHHHHHHHHHHHH
Q 008437 72 ELRCPISL-QLMYDPV---IIASGQTYERICIEKWLSD-----GHSTCPK--TQQKLPHL---CLTPNYCVKGLIASWCE 137 (565)
Q Consensus 72 ~f~CpI~~-~~m~dPV---~~~~g~ty~r~~I~~~~~~-----~~~~cP~--t~~~l~~~---~l~pn~~l~~~i~~~~~ 137 (565)
...|.||. +.+...- +.-|||-||..|..+++.. ....||. |...|+.. .+.|+ .++.+.++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 57899999 3322211 4569999999999999872 3456766 44444432 23333 45555555555
Q ss_pred HcCC
Q 008437 138 MNGV 141 (565)
Q Consensus 138 ~~~~ 141 (565)
+..+
T Consensus 225 e~~i 228 (384)
T KOG1812|consen 225 EEVI 228 (384)
T ss_pred HHhh
Confidence 4443
No 354
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=50.61 E-value=20 Score=38.89 Aligned_cols=149 Identities=13% Similarity=0.015 Sum_probs=83.2
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhcc----CCCC-hHHHHHc--CchHHHhhcc---CCCChHHHHHHHHHHHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLST----IPSN-IPNLLSA--GIISGLQSLA---VPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~----~~~n-k~~iv~~--G~v~~Lv~Ll---~~~~~~~~e~al~~L~nL 413 (565)
.+...+...|.+. .-..+..+.+++.|++. .-.+ +...-+. -.+..++++. ......+..++...|.|+
T Consensus 433 ~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 433 DAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 3445555555554 56678888888888862 1122 2222221 1233333321 223567778888888888
Q ss_pred hcCcc-----cHHHHhcCCCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCcHHHHHHhhhc-CChh
Q 008437 414 AASAA-----GKEEMNSTPGLVSGLATV-LDTGELIEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSISVN-GSTR 485 (565)
Q Consensus 414 a~~~~-----~r~~i~~~~g~v~~Lv~l-L~~~s~~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~v~~Lv~L~~~-~s~~ 485 (565)
...-. +-..+.+ +.+..++.- .-.+.-.++=+|+-++.||.++..- ...+-...-+++.|..|..+ .+-+
T Consensus 512 lQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 512 LQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred HHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 76221 1122222 222222221 1224667899999999999987752 12222233567888777666 4678
Q ss_pred HHHHHHHHHH
Q 008437 486 GRDKAQRLLM 495 (565)
Q Consensus 486 ~k~~A~~lL~ 495 (565)
+|-+|+.+|.
T Consensus 590 VRi~AA~aL~ 599 (728)
T KOG4535|consen 590 VRIRAAAALS 599 (728)
T ss_pred Eeehhhhhhc
Confidence 8888877764
No 355
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.08 E-value=75 Score=37.07 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCC-
Q 008437 321 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPG- 398 (565)
Q Consensus 321 ~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~- 398 (565)
..+...|..+....+-+..+...+++...+.+|++. ++=+--+|+..+..||.- ....++|-|.+ -....
T Consensus 745 ~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s~k~ 816 (982)
T KOG4653|consen 745 GYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLSEKK 816 (982)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHhccc
Confidence 345555555554444445555567778888888877 666667777766666642 23445666666 22211
Q ss_pred --ChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHH
Q 008437 399 --DPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 475 (565)
Q Consensus 399 --~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~L 475 (565)
....+-.+-.++.+++.. .+-.....+ -.+...+..++..+..-+..++++|.+||............+ ++..+
T Consensus 817 k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~~~I 893 (982)
T KOG4653|consen 817 KLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-VLQLI 893 (982)
T ss_pred CCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HHHHH
Confidence 112222233444444331 111111111 112223333443445558888889998887443222222222 23333
Q ss_pred HH-hhhcCChhHHHHHHHHHHHHHh
Q 008437 476 VS-ISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 476 v~-L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
+. ...+|+.-+|+.|+.++..+-.
T Consensus 894 l~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 894 LSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHccCCchhhHHHHHHHHHHHHh
Confidence 33 4456788888888888887543
No 356
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=49.80 E-value=14 Score=44.21 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=29.2
Q ss_pred CCCCcccccccc--cccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 68 LPPEELRCPISL--QLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 68 ~~p~~f~CpI~~--~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.+|.+++||=|. ++..|+ ..-+| ||- ....||.|+.+|..
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--fDL---------pdK~CPkCg~pl~k 951 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--FDL---------PDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--CCC---------CCCCCCcCCCcccc
Confidence 356799999998 777777 33444 432 57889999999753
No 357
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=49.72 E-value=6.6 Score=33.35 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=26.5
Q ss_pred CCCCcccccccccccCCcee--cCCCcccchHHHH
Q 008437 68 LPPEELRCPISLQLMYDPVI--IASGQTYERICIE 100 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~--~~~g~ty~r~~I~ 100 (565)
.+.++-.|++|++.+.+++. .|+||.|-..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667779999999988874 4899999888864
No 358
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=48.13 E-value=4.8e+02 Score=29.92 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHc--CchHHHhhccCCCChHHHHHHHHHHHHHhc--CcccH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA--GIISGLQSLAVPGDPMWTEKSLAVLLNLAA--SAAGK 420 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~--G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~--~~~~r 420 (565)
.+..|+..+. + ++.-+.-++++|.|+-.++.++..+... -.+..+++.-...+..++........|++. ...+
T Consensus 590 ~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~- 666 (745)
T KOG0301|consen 590 LVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN- 666 (745)
T ss_pred HHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-
Confidence 4455555554 4 6777888999999999887666666543 223333332111233443333333334433 1111
Q ss_pred HHHhcCCCCHHHHHHHhhcC-----CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc--CChhHHHHHHHH
Q 008437 421 EEMNSTPGLVSGLATVLDTG-----ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRL 493 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~-----s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~l 493 (565)
.+ .++.+.|...+... +-+..-..+.+|.+|+..+....+....-+ +..++.-... ..+..+..|..+
T Consensus 667 ~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~-v~sia~~~~~~~~~~~~k~~a~~i 741 (745)
T KOG0301|consen 667 EQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRS-VDSIAKKLKEAVSNPSGKNIARDI 741 (745)
T ss_pred cc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcC-HHHHHHHHHHhccCchhhHHHHHH
Confidence 11 24455555554431 222344566677888888765555444334 5666653333 467777888777
Q ss_pred HHH
Q 008437 494 LML 496 (565)
Q Consensus 494 L~~ 496 (565)
|++
T Consensus 742 l~~ 744 (745)
T KOG0301|consen 742 LSL 744 (745)
T ss_pred Hhc
Confidence 765
No 359
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=47.88 E-value=9.4 Score=38.56 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=18.1
Q ss_pred cccccccccccC--Cc-eecCCCcccchH
Q 008437 72 ELRCPISLQLMY--DP-VIIASGQTYERI 97 (565)
Q Consensus 72 ~f~CpI~~~~m~--dP-V~~~~g~ty~r~ 97 (565)
.|.||+|++.|. +. ..=+.||+||.+
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999885 22 222468888764
No 360
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.56 E-value=1.3e+02 Score=34.95 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=79.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhc
Q 008437 347 PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNS 425 (565)
Q Consensus 347 ~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~ 425 (565)
..+...+.++ +....+..+.++.+|+.-..-..+-.....-+...+ .+..-..+.+....+|..++. .++.-..+..
T Consensus 444 ~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~-~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 444 KALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQ-FNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcccccCcchHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 5667777777 788888999999999864431111111111111111 111123455677788888887 4566677777
Q ss_pred CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh--HHHHHHHhC
Q 008437 426 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE--KCCQMVLQE 469 (565)
Q Consensus 426 ~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~--~~~~~v~~~ 469 (565)
..++...++.++-++++...+.|..+|..+...+. +..+.+++.
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~ 567 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQS 567 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77999999999999999999999999999886443 344555554
No 361
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=47.08 E-value=14 Score=43.98 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=37.0
Q ss_pred cccccccc-----ccCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQ-----LMYDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~-----~m~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
-.|.||++ ..-||-+.+ ||-..||.|.+-=.++|+..||.|++.+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 46899985 356677664 88889999997667789999999998775
No 362
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=47.02 E-value=1.2e+02 Score=28.04 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.+..|+..|+.+.++..|.++++.|..|-.-++...+.+.. .. .......+...... .+.+... .
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~---------~~~~~~~~~~~~~~---~l~~~~~--~ 76 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD---------SKSSENSNDESTDI---SLPMMGI--S 76 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC---------ccccccccccchhh---HHhhccC--C
Confidence 45567778877767999999999999997666643332221 11 00000011111111 1222211 1
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHH---HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~---~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
..-....-.-++..|+.+|+.+.-. ..++.++.++-.....+..---..++|.+++.+++. +...++.-+.-|..|
T Consensus 77 ~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 77 PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-PDSLREFYFQQLADL 155 (160)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 1223333344678888888765322 224444444322222222111146889999999977 556666665555544
No 363
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.68 E-value=61 Score=29.17 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=56.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhc-CChh---HHHHHHHHHHHHHhhc
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVN-GSTR---GRDKAQRLLMLFREQR 501 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-~s~~---~k~~A~~lL~~L~~~r 501 (565)
++..|.+.|..+++.++-.|+.+|-.+..+.+ .....+.....+..|..+..+ .... +|+++..+|......=
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999988888764 556666677788888886665 3444 7888888888766543
No 364
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=44.92 E-value=3.2e+02 Score=30.90 Aligned_cols=71 Identities=24% Similarity=0.207 Sum_probs=54.8
Q ss_pred cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 008437 385 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 456 (565)
Q Consensus 385 ~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc 456 (565)
+|.+..+++-+.+.+..++..++.+|+.+..+-......+.+ |.+..|.+.+-+..+.++..|+.+|..+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N-~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLAN-GLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 356666777667788899999999999998866555555554 77888888777778889999998887654
No 365
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=44.66 E-value=3.4e+02 Score=27.30 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=74.6
Q ss_pred hhhhhccCCHH-HHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHh
Q 008437 252 RVFTGANGFVV-ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNL 330 (565)
Q Consensus 252 r~~i~~~G~i~-~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nL 330 (565)
|..+++.+.+. -|+.+|.+.. .+..+-..++..|.+|+..- .. + ........+....+..+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~P~--~~-----------~---~~~~~~~~~~~~~~~~l 94 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYK--DDDKLFLACLRLLVNLTWPI--EL-----------L---VESQPKDKNQRRNIPEL 94 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCCCH--HH-----------h---ccCCCCChHHHHHHHHH
Confidence 34444444443 4555555432 36778888889999987521 11 0 00000000000011111
Q ss_pred -cCCCCCchhhccCCchHHHHHHhcC----C------CCHHHHHHHHHHHHHhccCCC-------------ChHH----H
Q 008437 331 -SFLDDAKPIIGSSHAVPFLVELCKG----K------TEHQCKLDALHALYNLSTIPS-------------NIPN----L 382 (565)
Q Consensus 331 -s~~~~~k~~I~~~g~i~~Lv~lL~~----~------~~~~~~~~Al~aL~nLs~~~~-------------nk~~----i 382 (565)
-....+|.++...+++..++.++.. + .+....+..+..+.||..-++ .+.. +
T Consensus 95 ~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l 174 (266)
T PF04821_consen 95 LKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWAL 174 (266)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHH
Confidence 1113446677666666766665521 1 144577888888999875422 1112 2
Q ss_pred HHcCchHHHhhccCCC-ChHHHHHHHHHHHHHhcCc
Q 008437 383 LSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 383 v~~G~v~~Lv~Ll~~~-~~~~~e~al~~L~nLa~~~ 417 (565)
-+.|+...|+.+..+. ...+....+.++..|-...
T Consensus 175 ~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 175 FESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 3457777777665443 3334446666666666543
No 366
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.61 E-value=70 Score=27.22 Aligned_cols=69 Identities=20% Similarity=0.055 Sum_probs=52.9
Q ss_pred HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 384 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 384 ~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
..+.+..|++-+........+.++.+|..|..++.+...+... |++.-|.++-...++..+...-.+|-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~i-G~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDI-GAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHc-cHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3456677777555556667899999999999999888888876 88888888777777777766655554
No 367
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.64 E-value=12 Score=40.36 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCCCCccccccc-ccccCCceec--CCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 008437 67 PLPPEELRCPIS-LQLMYDPVII--ASGQTYERICIEKWLSDG-HSTCPKTQQKLPHLCLTPNYCVKGLIASWCE 137 (565)
Q Consensus 67 ~~~p~~f~CpI~-~~~m~dPV~~--~~g~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~ 137 (565)
...|+.+.||+| .+.|.|-+.+ .|+.+||-.||++.+.++ ...|+.|.. ....+.|+..++..+..-..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHHh
Confidence 357899999999 8999999987 599999999999988653 334555532 23457777777777765533
No 368
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.49 E-value=17 Score=34.05 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=17.1
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 116 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~ 116 (565)
.+.||+|+-++.|. ....||+|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 78899985444442 35669999865
No 369
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=42.02 E-value=4.5e+02 Score=27.86 Aligned_cols=135 Identities=16% Similarity=0.037 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHhcC---chHHHHHHhcCCcH-HHHHHHHHHHhcCCCCCchhhccCCchHHHHH
Q 008437 276 NSYAQEIGAMALFNLAVNNNRNKELMLAAG---VIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVE 351 (565)
Q Consensus 276 ~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G---~i~~Lv~lL~s~~~-~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~ 351 (565)
+..+-.+|+.+|..+- .+.+.-..+-..- .+...+..|..+.. +..+...+.-|+... ....+.....+..|+.
T Consensus 59 ~~~L~~qALkll~~~l-~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFL-YHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHH-ccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCCcccchhhHHHHHH
Confidence 5567778888887775 4444444443321 35666667766543 333444455555432 2222333444555555
Q ss_pred Hhc---CC-CCHHHHHHHHHHHHHhccCCCChHHHHH-cC-chHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 352 LCK---GK-TEHQCKLDALHALYNLSTIPSNIPNLLS-AG-IISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 352 lL~---~~-~~~~~~~~Al~aL~nLs~~~~nk~~iv~-~G-~v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
.+. ++ .+..+...++.++.+|.... ...|++ .+ -++.|+..+-+....++..|..++..+.
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~--p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQF--PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 443 21 24566777888888887533 233433 22 5667777333445556666666665554
No 370
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.74 E-value=81 Score=36.04 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=74.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH------cCchHHHhhccCCCChHHHHHHHHHHHHHhcCc--
Q 008437 346 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS------AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-- 417 (565)
Q Consensus 346 i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~------~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-- 417 (565)
...++++|.+. +.-.+-.-+.+..|+..+..-...+++ +..|..|++-+.+..+-.+.+|+.++..++.-+
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 46788999988 787888888889998865444445554 234455555344567888899999999988733
Q ss_pred --ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 418 --AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 418 --~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
.-|.++ +...+..|.+.+..++.+|+.++..|-.
T Consensus 380 ~~~~r~ev------~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 380 TVGRRHEV------IRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ccchHHHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 233333 3445566777788899999999987654
No 371
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.63 E-value=6.2e+02 Score=29.73 Aligned_cols=198 Identities=11% Similarity=0.128 Sum_probs=109.6
Q ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhh
Q 008437 263 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPII 340 (565)
Q Consensus 263 ~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I 340 (565)
-|..+|.+ ........|..-|.++-... ++. ...+|..|+...+.+.... ..--|..-+..+.+-..+
T Consensus 39 dL~~lLdS----nkd~~KleAmKRIia~iA~G-~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 39 DLKQLLDS----NKDSLKLEAMKRIIALIAKG-KDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL 108 (968)
T ss_pred HHHHHHhc----cccHHHHHHHHHHHHHHhcC-CcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee
Confidence 45666665 33344445555444442222 221 1235666666655443222 222222223222221222
Q ss_pred ccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc-Ccc
Q 008437 341 GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA-SAA 418 (565)
Q Consensus 341 ~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~-~~~ 418 (565)
-|..+-+-|.+. ++.++..|+++|..+ |..++. +++-.-++ ...+..+-++..|+.+|-.|=+ .++
T Consensus 109 ----SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 109 ----SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ----eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 366777788888 888998888887665 222221 22222223 4556778888888777776655 444
Q ss_pred cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 419 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 419 ~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
.+.++. ..+-.+|.+.++.+--.|+.+.-.+|-+.- . ++ .+-...|..++.+-++=.|--...+
T Consensus 177 ~k~qL~------e~I~~LLaD~splVvgsAv~AF~evCPerl---d-LI-HknyrklC~ll~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 177 QKDQLE------EVIKKLLADRSPLVVGSAVMAFEEVCPERL---D-LI-HKNYRKLCRLLPDVDEWGQVVLINM 240 (968)
T ss_pred hHHHHH------HHHHHHhcCCCCcchhHHHHHHHHhchhHH---H-Hh-hHHHHHHHhhccchhhhhHHHHHHH
Confidence 444443 345556777899999999999998885432 1 22 2446777777777666665444333
No 372
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=41.61 E-value=97 Score=32.81 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=60.4
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCCh-HHHHHHHHHHHHHhcCcccHHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDP-MWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~-~~~e~al~~L~nLa~~~~~r~~ 422 (565)
-+..+++=|..+....++..++--|..-+.++.-+..+...|.+..+++ +...++. ...-.++.++..|+.....-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4556666566444567888899999999999999999999999999999 4444444 3333444555555554333333
Q ss_pred HhcCCCCHHHHHHHhh
Q 008437 423 MNSTPGLVSGLATVLD 438 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~ 438 (565)
......+..++.++.
T Consensus 102 -~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 -LLDRDSLRLLLKLLK 116 (361)
T ss_pred -hhchhHHHHHHHHhc
Confidence 233355555566665
No 373
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.96 E-value=23 Score=30.46 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=21.9
Q ss_pred CCcccccccccc----cCCceecC-CCcccchHHHH
Q 008437 70 PEELRCPISLQL----MYDPVIIA-SGQTYERICIE 100 (565)
Q Consensus 70 p~~f~CpI~~~~----m~dPV~~~-~g~ty~r~~I~ 100 (565)
-..-+||-|+.- =+||++.| ||.+|-|+..+
T Consensus 7 GtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe 42 (129)
T COG4530 7 GTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFE 42 (129)
T ss_pred cccccCccccchhhccCCCccccCcccccchHHHHH
Confidence 345678888754 46788877 88888776544
No 374
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=40.84 E-value=11 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=12.3
Q ss_pred CCCCCCccccccccc
Q 008437 66 MPLPPEELRCPISLQ 80 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~ 80 (565)
..++|++|.||+|+.
T Consensus 28 f~~Lp~~w~CP~C~a 42 (50)
T cd00730 28 FEDLPDDWVCPVCGA 42 (50)
T ss_pred HhHCCCCCCCCCCCC
Confidence 346899999999974
No 375
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.32 E-value=2.8e+02 Score=26.27 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=68.4
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 424 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~ 424 (565)
.++.++++..+. +..++..|+..|.-+....=.-+ .-++|.|+.|..+.++.++..|...+..|....++--...
T Consensus 9 yl~~Il~~~~~~-~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSS-DDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666666666 78888888888766542211111 1267889998888999999999999999977443322221
Q ss_pred cCCCCHHHHHHHhhc--CCHH--H---HHHHHHHHHHhhcCChHHHHHH
Q 008437 425 STPGLVSGLATVLDT--GELI--E---QEQAVSCLFLLCNGNEKCCQMV 466 (565)
Q Consensus 425 ~~~g~v~~Lv~lL~~--~s~~--~---~e~Av~~L~~Lc~~~~~~~~~v 466 (565)
-. .|+..-..+-.. ++.. . ...-.+-|+.+++.+...+..+
T Consensus 84 ~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F 131 (187)
T PF12830_consen 84 YS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF 131 (187)
T ss_pred HH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH
Confidence 11 233333333221 1111 1 4555667777777555444443
No 376
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=40.15 E-value=1.2e+02 Score=25.94 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccc--cCCCHHHHHHHHHHHHHh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNL 290 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~--~s~~~~~q~~A~~aL~nL 290 (565)
+.+..+.+.|.+. ++.++.+|+..|..+.+... .+...+....++..++++..... ...+..+++.+...+...
T Consensus 37 ~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4567778889887 99999999999999998764 57777777777777766522211 113567788877666544
No 377
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.96 E-value=22 Score=33.22 Aligned_cols=32 Identities=25% Similarity=0.718 Sum_probs=24.8
Q ss_pred ecCCCcccchHHHHHHHhcC----------CCCCCCCCCCCC
Q 008437 87 IIASGQTYERICIEKWLSDG----------HSTCPKTQQKLP 118 (565)
Q Consensus 87 ~~~~g~ty~r~~I~~~~~~~----------~~~cP~t~~~l~ 118 (565)
-+.||+.|-.-|+.+|++.- -..||.|..|+.
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 35799999999999999741 124999987754
No 378
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.95 E-value=1.9e+02 Score=32.60 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
.-++..+.+. +..+|.+.+..|+.+...- .-......+|.++.|..-+.. ..+.++..|+.+|..+- ....|-
T Consensus 94 ~h~lRg~esk-dk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~D----RE~~VR~eAv~~L~~~Q-e~~~ne 166 (885)
T COG5218 94 YHLLRGTESK-DKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFD----REKAVRREAVKVLCYYQ-EMELNE 166 (885)
T ss_pred HHHHhcccCc-chhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHH-hccCCh
Confidence 3444555555 7889999999998887321 112234456777777765554 56789999999998873 222222
Q ss_pred HHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCch
Q 008437 299 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKP 338 (565)
Q Consensus 299 ~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~ 338 (565)
+- .....|+.+++...+.+.--++|.|++.++....
T Consensus 167 en----~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p 202 (885)
T COG5218 167 EN----RIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYP 202 (885)
T ss_pred HH----HHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcch
Confidence 11 1234677788877666666667788887665443
No 379
>PHA02862 5L protein; Provisional
Probab=38.14 E-value=27 Score=31.73 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=35.6
Q ss_pred cccccccccCCceecCCCcc-----cchHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 008437 74 RCPISLQLMYDPVIIASGQT-----YERICIEKWLSD-GHSTCPKTQQKLPHLCLTPNYCVKGLIASWC 136 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~t-----y~r~~I~~~~~~-~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~ 136 (565)
.|=||.+-=.|. +-||..+ .-++|+++|+.. +..+||.|+.++.. .+. .+-..+|.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I---k~~---yKpf~kW~ 65 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI---KKT---YVSFKKWN 65 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE---EEc---cccHHHhh
Confidence 366777654444 3455432 458999999974 56789999988743 222 33566775
No 380
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.81 E-value=1.4e+02 Score=30.77 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=72.5
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
++...+..|.+. +-....+++..|.-|+..+. ....+. ..+|..+++-+++....+...|+.++.-+...-.+...-
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666 66677777777777775443 222222 224555555555666667777777777776633222211
Q ss_pred hcCCCCHHHHHHH-hhc---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437 424 NSTPGLVSGLATV-LDT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 492 (565)
Q Consensus 424 ~~~~g~v~~Lv~l-L~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~ 492 (565)
....++.. |.. +..-++|.|-.+|..+..+-.- .-+++.|.....+..++++.+|..
T Consensus 167 -----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 167 -----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred -----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhc
Confidence 12223332 222 2344678888888776654321 123455555556666666666654
No 381
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.62 E-value=1.2e+02 Score=34.50 Aligned_cols=164 Identities=19% Similarity=0.148 Sum_probs=88.1
Q ss_pred chHHHHHHhcCCcH-HHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCC---CCHHHHHHHHHHHHHhc----cCC
Q 008437 306 VIPLLEKMISNSNS-HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGK---TEHQCKLDALHALYNLS----TIP 376 (565)
Q Consensus 306 ~i~~Lv~lL~s~~~-~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs----~~~ 376 (565)
++..+..++.+... ...|+.+|..|...- .- ....+..+..|++.. .++.++..|+-++..|. ...
T Consensus 396 av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 57778888877643 344666666654321 11 123456666666542 25567777777777764 331
Q ss_pred ------CChHHHHHcCchHHHhhccC----CCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC---CHH
Q 008437 377 ------SNIPNLLSAGIISGLQSLAV----PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG---ELI 443 (565)
Q Consensus 377 ------~nk~~iv~~G~v~~Lv~Ll~----~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~---s~~ 443 (565)
..+...+....++.|...+. .++..-+..++.+|.|+-. +..++.|..++... +..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchH
Confidence 11222233345666666332 3455666788899998843 35677777777654 667
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC--ChhHHHHHHHH
Q 008437 444 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRL 493 (565)
Q Consensus 444 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~A~~l 493 (565)
++-.|+.+|..+....++. +.+.|+.+..+. +..+|-.|..+
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHH
Confidence 7888888888776555421 234455555553 34455444433
No 382
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.51 E-value=1e+02 Score=34.45 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=59.4
Q ss_pred cCchHHHhhc-cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHH
Q 008437 385 AGIISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKC 462 (565)
Q Consensus 385 ~G~v~~Lv~L-l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~ 462 (565)
.|+|..|+.. +.+++..++..|+.+|.-+|..+ ...+...+++|.. .++.++.-.+-+|..-|.+....
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 3677777774 66778888888888888777643 3566677777765 46666666666666666655421
Q ss_pred HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 463 CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 463 ~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
. ++..|-.|..+.++-+|..|...+.++-
T Consensus 621 ~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 621 V-------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred H-------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 1 1222333444555555555555554444
No 383
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=37.44 E-value=29 Score=31.16 Aligned_cols=43 Identities=19% Similarity=0.514 Sum_probs=32.4
Q ss_pred cccccccccccCC--cee-cCCCcc------cchHHHHHHHhcCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYD--PVI-IASGQT------YERICIEKWLSDGHSTCPKTQQ 115 (565)
Q Consensus 72 ~f~CpI~~~~m~d--PV~-~~~g~t------y~r~~I~~~~~~~~~~cP~t~~ 115 (565)
...|.||.+-..+ =|+ +++|.| ||-.|+++|-.+ ....|.-+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccc
Confidence 5679999987777 554 567754 999999999643 567888654
No 384
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=37.37 E-value=41 Score=31.08 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=32.9
Q ss_pred CcccccccccccCCceecCCCcc-----cchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVIIASGQT-----YERICIEKWLSD-GHSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~g~t-----y~r~~I~~~~~~-~~~~cP~t~~~l~ 118 (565)
.+-.|=||.+-.. +..-||..+ .-++|+++|+.. +...||.|++++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456888887643 334455432 368999999985 4678999998874
No 385
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=37.22 E-value=21 Score=34.41 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=35.4
Q ss_pred ccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
..|.+|..+.-.=+-- .||..|-+.||+.++.+ .+.||.|+.-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 4799999986554432 57888999999999987 788999975443
No 386
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=36.91 E-value=28 Score=32.99 Aligned_cols=36 Identities=22% Similarity=0.526 Sum_probs=28.3
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 116 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~ 116 (565)
-+.||.|+.+|-|-|- .=-..+|-+|+.. ||...+.
T Consensus 87 IYICPFTGKVF~DNt~-----~nPQDAIYDWvSk----CPeN~ER 122 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTH-----PNPQDAIYDWVSK----CPENTER 122 (238)
T ss_pred EEEcCCcCccccCCCC-----CChHHHHHHHHhh----CCccchh
Confidence 4899999999999753 3347899999986 9986443
No 387
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.37 E-value=3.8e+02 Score=31.26 Aligned_cols=139 Identities=16% Similarity=0.113 Sum_probs=72.5
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchh
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPI 339 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~ 339 (565)
.+..|.++|... +..+.....+.++..+...+++.|+. ++..|..++.+......+..+|..|-. + .-..
T Consensus 392 ~m~FL~~~Lr~e---Gg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~-E-gP~a 461 (865)
T KOG1078|consen 392 MMNFLSNMLREE---GGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK-E-GPKA 461 (865)
T ss_pred HHHHHHHHHHhc---cCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc-c-CCCC
Confidence 344455555431 33444445555555554444444443 344566665555444445555543321 1 1111
Q ss_pred hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 340 I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
..-+..|..+...+--+ +.-++..|..+|.+.....+ -+. -+.-.|.+.+.+.+..+++.|...|.++-
T Consensus 462 ~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11123444444433334 55688889999998873222 221 12223444667788889999999998886
No 388
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=36.35 E-value=15 Score=26.80 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=9.5
Q ss_pred CCCCCCccccccccc
Q 008437 66 MPLPPEELRCPISLQ 80 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~ 80 (565)
..++|+++.||+|+-
T Consensus 28 F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 28 FEDLPDDWVCPVCGA 42 (47)
T ss_dssp GGGS-TT-B-TTTSS
T ss_pred HHHCCCCCcCcCCCC
Confidence 456899999999974
No 389
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.23 E-value=1.6e+02 Score=34.37 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=86.0
Q ss_pred CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCc-hH----HHHHHh---cCCcHH--HHH-HHHH
Q 008437 259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGV-IP----LLEKMI---SNSNSH--GAA-TALY 327 (565)
Q Consensus 259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~-i~----~Lv~lL---~s~~~~--~~A-~aaL 327 (565)
..+|.++++|.+ +...+...|+.++-.+-.-.+.+...+..++- .| .|..+. +.+... +.. -+++
T Consensus 498 ~~~p~li~~L~a----~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaIm 573 (960)
T KOG1992|consen 498 ALLPRLIRFLEA----ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHhccC----cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHH
Confidence 357788888876 56677788888777653333334444554432 22 222222 223222 223 3334
Q ss_pred HHhcCCCCCchhhccCCchHHHHHHh----cCCCCHHHHHHHHHHHH----HhccCCCChHHHHHcCchHHHhhccCCCC
Q 008437 328 LNLSFLDDAKPIIGSSHAVPFLVELC----KGKTEHQCKLDALHALY----NLSTIPSNIPNLLSAGIISGLQSLAVPGD 399 (565)
Q Consensus 328 ~nLs~~~~~k~~I~~~g~i~~Lv~lL----~~~~~~~~~~~Al~aL~----nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~ 399 (565)
+.+...++.-...+ ...+..|.+++ +++.++..-..-..++. ..|..........+...+|.+..++.++-
T Consensus 574 Rii~i~~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 574 RIISILQSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI 652 (960)
T ss_pred HHHHhCHHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433221111 12334444444 44445554433333333 33333333333334445655555665554
Q ss_pred hHHHHHHHHHHHHHhcCccc--------------HHHHhcCCCCHHHHHHHhh
Q 008437 400 PMWTEKSLAVLLNLAASAAG--------------KEEMNSTPGLVSGLATVLD 438 (565)
Q Consensus 400 ~~~~e~al~~L~nLa~~~~~--------------r~~i~~~~g~v~~Lv~lL~ 438 (565)
.+..-.++.+|+.|.....+ .....+..|-|++++++|.
T Consensus 653 ~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 55556666666666654443 1133445578888888775
No 390
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.98 E-value=6.6e+02 Score=28.10 Aligned_cols=92 Identities=18% Similarity=0.072 Sum_probs=53.4
Q ss_pred CchHHHHHHhcCC---CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC-C--CChHHHHHHHHHHHHHhcCc
Q 008437 344 HAVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-P--GDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 344 g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~-~--~~~~~~e~al~~L~nLa~~~ 417 (565)
..++.|.+.|... .+..-+..+++||.|+-... .++.|..++. + ....++..|+.+|..++...
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4667777766532 14455677888888875432 4455555433 2 24577889999999887521
Q ss_pred ccHHHHhcCCCCHHHHHHHhhc--CCHHHHHHHHHHHH
Q 008437 418 AGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLF 453 (565)
Q Consensus 418 ~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av~~L~ 453 (565)
. ..+-+.|..+..+ .++++|-.|+.+|.
T Consensus 512 p--------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 512 P--------RKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred c--------hHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 1 1234456666655 34555555555443
No 391
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=3.3e+02 Score=31.60 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC---cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHH
Q 008437 275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS---NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVE 351 (565)
Q Consensus 275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~---~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~ 351 (565)
.+..+++.|+.+|.-....++ ..++..+.+|... ..+--|+.+|.--+....++.+|. .+++|+
T Consensus 567 ~nDDVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~---lLepl~- 633 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN---LLEPLT- 633 (929)
T ss_pred cchHHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH---HHhhhh-
Confidence 456677777777766654332 2356677777643 233334444433333344555543 344443
Q ss_pred HhcCCCCHHHHHHHHHHHHHhc
Q 008437 352 LCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 352 lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.+. ..-+++.|+-++.-+-
T Consensus 634 --~D~-~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 634 --SDP-VDFVRQGALIALAMIM 652 (929)
T ss_pred --cCh-HHHHHHHHHHHHHHHH
Confidence 333 4457777877776653
No 392
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=35.34 E-value=2e+02 Score=25.20 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=61.8
Q ss_pred ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh---hcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhC
Q 008437 394 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL---DTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQE 469 (565)
Q Consensus 394 Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL---~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~ 469 (565)
...+.+.......+.-|+.++........|++ .|.+.| ...+....-.|+.+|..|+.++. .+...+...
T Consensus 11 AT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~------~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~ 84 (125)
T PF01417_consen 11 ATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMD------VLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDH 84 (125)
T ss_dssp HTSSSSSS--HHHHHHHHHHTTSCHHHHHHHH------HHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHT
T ss_pred HcCCCCCCcCHHHHHHHHHHHhccccHHHHHH------HHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 33333333446667777778776655555554 466666 44677788999999999887554 444554432
Q ss_pred -CcHHHHHHhhh---cCCh---hHHHHHHHHHHHHHhh
Q 008437 470 -GVIPALVSISV---NGST---RGRDKAQRLLMLFREQ 500 (565)
Q Consensus 470 -G~v~~Lv~L~~---~~s~---~~k~~A~~lL~~L~~~ 500 (565)
..|..|..+.. .|.+ .+|++|..++.+|.+.
T Consensus 85 ~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 85 IDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp HHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 44555543322 2334 3999999999998753
No 393
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=35.03 E-value=25 Score=32.67 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 121 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 121 (565)
-+..|.||-|. ..|.-. ..+. ..++||.||.+|...+
T Consensus 106 ~~~~Y~Cp~c~------------~r~tf~---eA~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 106 NNMFFICPNMC------------VRFTFN---EAME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCCeEECCCCC------------cEeeHH---HHHH-cCCcCCCCCCEeeecc
Confidence 36789999865 333221 2222 3689999999986543
No 394
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=34.69 E-value=29 Score=38.47 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcH--HHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI--PALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v--~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
+.|..||.-|-..+.+.-+--+.=|.++|.++.++-..+-.-|+| |.|+ |.++-.+.++..+.
T Consensus 486 ~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLl--------RpQEETVAAiMdIK 550 (812)
T KOG1451|consen 486 DAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLL--------RPQEETVAAIMDIK 550 (812)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeeccccc--------CchHHHHHHHHcch
Confidence 468888888877788888888899999999887766666666765 4454 34454555544433
No 395
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.02 E-value=62 Score=24.83 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCC
Q 008437 106 GHSTCPKTQQKLPH 119 (565)
Q Consensus 106 ~~~~cP~t~~~l~~ 119 (565)
.|.+||.||.++.+
T Consensus 2 ~HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 2 PHKHCPVCGKPIPP 15 (59)
T ss_pred CCCcCCcCCCcCCc
Confidence 47889999988764
No 396
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=33.93 E-value=3.5e+02 Score=29.83 Aligned_cols=112 Identities=14% Similarity=0.190 Sum_probs=67.9
Q ss_pred cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH---hcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhh---c
Q 008437 385 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLC---N 457 (565)
Q Consensus 385 ~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i---~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc---~ 457 (565)
.+.|+.+++.+ +.+.+.+-.+.++. +...+.+..+ +...+.|+.|+.+|.. .+...+.+|..+|..|. +
T Consensus 20 ~~~v~~llkHI--~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHI--DTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhc--CCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 35666666643 33444444444444 2223344443 3345899999999974 57778888888876653 3
Q ss_pred CC----------hHHHHHHHhCCcHHHHHHhhh--cCChhHHHHHHHHHHHHHhh
Q 008437 458 GN----------EKCCQMVLQEGVIPALVSISV--NGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 458 ~~----------~~~~~~v~~~G~v~~Lv~L~~--~~s~~~k~~A~~lL~~L~~~ 500 (565)
+. ....+.+..+-.|..|+..+. .++...--...-++.++|+.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 21 234556677788888887555 45555555556677777544
No 397
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=33.45 E-value=45 Score=28.88 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChH
Q 008437 361 CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM 401 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~ 401 (565)
-....+..|..|+..++--..+++.|+++.|+.||.+.+..
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~D 102 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTD 102 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcc
Confidence 45667888999999999999999999999999988776554
No 398
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.31 E-value=2.2e+02 Score=24.35 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=49.7
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHh-----h-hcCChhHHHHHHHHHHHHH
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSI-----S-VNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L-----~-~~~s~~~k~~A~~lL~~L~ 498 (565)
++..|.+.|...++..+-.|+.+|-.+..+.. .....+........++.+ . ..-+..+|+++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45567777888899999999999999988664 556666666555555442 1 1226788999988887654
No 399
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=33.28 E-value=40 Score=24.41 Aligned_cols=29 Identities=28% Similarity=0.771 Sum_probs=17.8
Q ss_pred ceecCCCcc-----cchHHHHHHHhc-CCCCCCCC
Q 008437 85 PVIIASGQT-----YERICIEKWLSD-GHSTCPKT 113 (565)
Q Consensus 85 PV~~~~g~t-----y~r~~I~~~~~~-~~~~cP~t 113 (565)
|.+.||+-+ .=+.|+++|+.. +..+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 677776533 358899999974 56778876
No 400
>PLN02400 cellulose synthase
Probab=33.02 E-value=23 Score=42.36 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=35.9
Q ss_pred ccccccc-----ccCCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 74 RCPISLQ-----LMYDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 74 ~CpI~~~-----~m~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
.|.||++ ..-+|-+.+ ||--.||.|.|-=-++|+..||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 7999985 355676664 88889999997556789999999997775
No 401
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.91 E-value=2.1e+02 Score=25.09 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=42.7
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHH
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALY 327 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL 327 (565)
.+..+.++|.......+......++.++..... --.-..+.+.+.++.+..+|..++.+..|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~--~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWIS--WIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT--TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH--hCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 344444455442211126777888888888753 344566777789999999998887777777654
No 402
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=32.73 E-value=26 Score=35.27 Aligned_cols=60 Identities=10% Similarity=0.283 Sum_probs=36.6
Q ss_pred CCcccccccccccCC-------------cee-cCCCcccchHHHHH-HHhc----CCCCCCCCCCCCCCCCCcccHHHHH
Q 008437 70 PEELRCPISLQLMYD-------------PVI-IASGQTYERICIEK-WLSD----GHSTCPKTQQKLPHLCLTPNYCVKG 130 (565)
Q Consensus 70 p~~f~CpI~~~~m~d-------------PV~-~~~g~ty~r~~I~~-~~~~----~~~~cP~t~~~l~~~~l~pn~~l~~ 130 (565)
+..|.|++|+.++.- |-. .-||.-|.|.++.+ +++. ..+.||.|++.|.+. . +||.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR---S--NLRA 233 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR---S--NLRA 233 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch---H--HHHH
Confidence 668999999877532 221 23777788765433 2321 135699999988653 2 3566
Q ss_pred HHHH
Q 008437 131 LIAS 134 (565)
Q Consensus 131 ~i~~ 134 (565)
-++.
T Consensus 234 HmQT 237 (279)
T KOG2462|consen 234 HMQT 237 (279)
T ss_pred HHHh
Confidence 5543
No 403
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.06 E-value=21 Score=35.95 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=21.6
Q ss_pred cchHHHHHHHhc------------CCCCCCCCCCCCCCCC
Q 008437 94 YERICIEKWLSD------------GHSTCPKTQQKLPHLC 121 (565)
Q Consensus 94 y~r~~I~~~~~~------------~~~~cP~t~~~l~~~~ 121 (565)
.||+|+.+||.. |..+||.|++.++..+
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 567999999853 5678999998876543
No 404
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=31.69 E-value=34 Score=32.45 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=32.0
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC-cccHHHHHHHHHHHHHcC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL-TPNYCVKGLIASWCEMNG 140 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l-~pn~~l~~~i~~~~~~~~ 140 (565)
+..|.||-|+.-+ ||+ .+ +. ..++||.|+.+|...+= .--..|++.|..--..-+
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~-eA----~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFD-EA----ME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCEEECCCCCcEE----------eHH-HH----hh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 5789999876321 222 12 22 47899999999875331 112356666665544433
No 405
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=31.60 E-value=26 Score=27.31 Aligned_cols=12 Identities=33% Similarity=1.066 Sum_probs=9.2
Q ss_pred cchHHHHHHHhc
Q 008437 94 YERICIEKWLSD 105 (565)
Q Consensus 94 y~r~~I~~~~~~ 105 (565)
|||.|+-+|+.+
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 406
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=31.46 E-value=22 Score=32.56 Aligned_cols=23 Identities=26% Similarity=0.784 Sum_probs=16.9
Q ss_pred CCCcccchHHHHHHHhc----------CCCCCCCCCCC
Q 008437 89 ASGQTYERICIEKWLSD----------GHSTCPKTQQK 116 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~----------~~~~cP~t~~~ 116 (565)
.+||+|| .||.. |.-+||+|+..
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 3789995 47753 56789999854
No 407
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.23 E-value=45 Score=26.94 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=21.9
Q ss_pred ccccccccc-----CCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 74 RCPISLQLM-----YDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 74 ~CpI~~~~m-----~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.|.||++=. -+|.+. .|+--.||.|.+-=.++|+..||.|+.++..
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 588887422 344444 3788889999998888999999999877653
No 408
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=31.13 E-value=72 Score=31.23 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=33.0
Q ss_pred cccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-----CCcccHHHHHHH
Q 008437 74 RCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-----CLTPNYCVKGLI 132 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-----~l~pn~~l~~~i 132 (565)
.+.+-+.+.+-=- ..||++|++..+........+.||.|+.++.+. +..|...+.+..
T Consensus 104 v~elHG~l~~~~C-~~C~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~ 166 (222)
T cd01413 104 VIELHGTLQTAYC-VNCGSKYDLEEVKYAKKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAI 166 (222)
T ss_pred EEEccCCcCcceE-CCCCCCcchhHHHHhccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHH
Confidence 3444444444221 237888888776433333457899998877653 235555554444
No 409
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.05 E-value=2.3e+02 Score=25.56 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHH-HHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVA-LLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~-Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+-+.|..+.++.++..|+..|..+.+... .....++..+++.. |++++... ...+..++...+..|...+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~-~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK-NNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-CCCcHHHHHHHHHHHHHHH
Confidence 4567778888754488899999999999987754 57778888999987 99999632 1124578888888777765
No 410
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=30.71 E-value=2.9e+02 Score=28.72 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=27.9
Q ss_pred HhcCcccHHHHhcCCCCHHHHHHHhhc---CCHHHHHHHHHHHHHhh
Q 008437 413 LAASAAGKEEMNSTPGLVSGLATVLDT---GELIEQEQAVSCLFLLC 456 (565)
Q Consensus 413 La~~~~~r~~i~~~~g~v~~Lv~lL~~---~s~~~~e~Av~~L~~Lc 456 (565)
|..++.....++..+..++.|++.... .+..++--|+-. +-+|
T Consensus 184 L~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~L-LGic 229 (312)
T PF04869_consen 184 LFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFL-LGIC 229 (312)
T ss_dssp HTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHH-HHHH
T ss_pred HhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHH-HHHH
Confidence 445888889999988899999998543 344455544444 4444
No 411
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=30.49 E-value=18 Score=21.42 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=8.2
Q ss_pred ccccccccccCCc
Q 008437 73 LRCPISLQLMYDP 85 (565)
Q Consensus 73 f~CpI~~~~m~dP 85 (565)
|.||+|+..|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4577776666554
No 412
>PRK00420 hypothetical protein; Validated
Probab=30.11 E-value=31 Score=30.07 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q 008437 108 STCPKTQQKL 117 (565)
Q Consensus 108 ~~cP~t~~~l 117 (565)
..||.|++.+
T Consensus 41 ~~Cp~Cg~~~ 50 (112)
T PRK00420 41 VVCPVHGKVY 50 (112)
T ss_pred eECCCCCCee
Confidence 3488887654
No 413
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.77 E-value=1.8e+02 Score=30.33 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHcC--chHHHhhccCCC---ChHHHHHHHHHHHHHhcCcccHHHH-------hcCCC
Q 008437 361 CKLDALHALYNLSTIPSNIPNLLSAG--IISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEM-------NSTPG 428 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~~~nk~~iv~~G--~v~~Lv~Ll~~~---~~~~~e~al~~L~nLa~~~~~r~~i-------~~~~g 428 (565)
++-.|+.+|..+......-..+...+ .+..|++|+..+ ...++..|+.+|..|+....-...+ +.| |
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H-G 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH-G 316 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc-c
Confidence 44555555555566667788888877 999999977543 4677889999999999855444443 233 5
Q ss_pred CHHHHHHH
Q 008437 429 LVSGLATV 436 (565)
Q Consensus 429 ~v~~Lv~l 436 (565)
.+..|++.
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 55555543
No 414
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.55 E-value=1.7e+02 Score=33.73 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=48.2
Q ss_pred chHHHhhc-cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHH
Q 008437 387 IISGLQSL-AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQ 464 (565)
Q Consensus 387 ~v~~Lv~L-l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~ 464 (565)
+|..|+.. +.+.+..++..|..+|.-++..+ +..++..|++|.. -++.++--|+.+|..-|.+.. ...
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e 624 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE 624 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH
Confidence 44445552 44445555555555555444322 3455666666654 467777777777766665443 111
Q ss_pred HHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 465 MVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 465 ~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
. +..|-.|..+..+-+|.-|...+.++-
T Consensus 625 A------i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 625 A------INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred H------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 1 222222344444555555555555544
No 415
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.50 E-value=48 Score=31.07 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.2
Q ss_pred hcCCCCCCCCCCCCCCC
Q 008437 104 SDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 104 ~~~~~~cP~t~~~l~~~ 120 (565)
..|.+.||.|++|+.+.
T Consensus 151 aAGRP~CPlCg~PlDP~ 167 (171)
T PF11290_consen 151 AAGRPPCPLCGEPLDPE 167 (171)
T ss_pred hCCCCCCCCCCCCCCCC
Confidence 46899999999998753
No 416
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=29.48 E-value=48 Score=31.08 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=16.4
Q ss_pred HhcCCCCCCCCCCCCCCC-CCcc
Q 008437 103 LSDGHSTCPKTQQKLPHL-CLTP 124 (565)
Q Consensus 103 ~~~~~~~cP~t~~~l~~~-~l~p 124 (565)
...|.+.||.|++|+.+. ++.|
T Consensus 152 VaAGRP~CPlCg~PldP~GH~Cp 174 (177)
T TIGR03847 152 VAAGRPPCPLCGRPIDPDGHICP 174 (177)
T ss_pred HhCCCCCCCCCCCCCCCCCccCC
Confidence 446899999999999753 4433
No 417
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=27 Score=36.73 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=34.4
Q ss_pred CcccccccccccCCce----ecCCCcccchHHHHHHH-hcCCCCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPV----IIASGQTYERICIEKWL-SDGHSTCPKTQQKLPHLC 121 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV----~~~~g~ty~r~~I~~~~-~~~~~~cP~t~~~l~~~~ 121 (565)
.+|.||+...+|.+=- +-.+|..||-++|++-- ...+...-+|..|++..+
T Consensus 100 geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~D 155 (518)
T KOG0883|consen 100 GEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRAD 155 (518)
T ss_pred CcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhc
Confidence 6799999999998864 23599999999999852 222333334444444433
No 418
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=28.92 E-value=7.3e+02 Score=26.38 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=78.0
Q ss_pred cCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH---cCchHHHhh-cc--CCCChHHHHHHHHHHHHHhc
Q 008437 342 SSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS---AGIISGLQS-LA--VPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 342 ~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~---~G~v~~Lv~-Ll--~~~~~~~~e~al~~L~nLa~ 415 (565)
+..-.+.+-+-++.......+.+|+..|..|+..- ..-+. .+.|..++. .- ...+..-++.|+.++..|+.
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~---~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKF---EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 34555555555543323446788889999998532 12111 123333332 11 12455667888888888887
Q ss_pred Cccc----H---------HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC
Q 008437 416 SAAG----K---------EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG 482 (565)
Q Consensus 416 ~~~~----r---------~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~ 482 (565)
.... . ..+..+ -+++.|. --.+..|-.+..|+..+...-..=+ .+.+ .+++|.|+..+.+.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~-~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--~~~l--~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQ-HVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--KEQL--LQIFPLLVNHLQSS 358 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHH-HTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHH--HHHHHHHHHHTTSS
T ss_pred hhccccCCcccccccccHHHHHHH-HhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCCC
Confidence 5422 1 112211 1223222 0013567788888888876655332 1122 25799999999999
Q ss_pred ChhHHHHHHHHH
Q 008437 483 STRGRDKAQRLL 494 (565)
Q Consensus 483 s~~~k~~A~~lL 494 (565)
+..+...|+.++
T Consensus 359 ~~vv~tyAA~~i 370 (370)
T PF08506_consen 359 SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcchhhhhhhhC
Confidence 999999998754
No 419
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.10 E-value=33 Score=23.04 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 008437 107 HSTCPKTQQK 116 (565)
Q Consensus 107 ~~~cP~t~~~ 116 (565)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 420
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=27.85 E-value=28 Score=32.15 Aligned_cols=20 Identities=25% Similarity=0.658 Sum_probs=17.4
Q ss_pred CcccccccccccCCceecCC
Q 008437 71 EELRCPISLQLMYDPVIIAS 90 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~~~ 90 (565)
++.+||||++.-.+.|.+-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998754
No 421
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.60 E-value=71 Score=24.17 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=20.9
Q ss_pred CcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 91 GQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 91 g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
-.|||..|-+.-|. ..||.|+-.|..
T Consensus 28 ECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 28 ECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred eCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 57999999998873 469999877643
No 422
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.47 E-value=43 Score=28.99 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCC
Q 008437 107 HSTCPKTQQKLPHL 120 (565)
Q Consensus 107 ~~~cP~t~~~l~~~ 120 (565)
..+||+||..+...
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 34588888766543
No 423
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.18 E-value=2.3e+02 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=50.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
.++.++++....+...+..|+.+|..+-+.+--+= --.+|.|+.|..+.++.++..|..+|+.+.+-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 35566666667888899999988877665441100 02478899999999999999999999998754
No 424
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=26.62 E-value=8.7e+02 Score=26.53 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHHHhccCccchhhhhccCCH-HHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCch
Q 008437 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFV-VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVI 307 (565)
Q Consensus 229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i-~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i 307 (565)
.+.+.|..+++.|..+.+..... .|.. ..+.+.+......++-..+.. +|..|+.+ . ......+.+..
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~~------~~~~R~~fF~~I~~~~~~~d~~~~l~---aL~~LT~~-G-rdi~~~~~~i~ 109 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDSS------SGLMRAEFFRDISDPSNDDDFDLRLE---ALIALTDN-G-RDIDFFEYEIG 109 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccccc------cHHHHHHHHHHHhcCCCchhHHHHHH---HHHHHHcC-C-cCchhcccchH
Confidence 36788999999999988765431 1111 122333433222223344444 46666632 2 22244577888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhcC---CCC--Cchhh-ccC----CchHHHHHHhcCC---CCHHHHHHHHHHHHHhcc
Q 008437 308 PLLEKMISNSNSHGAATALYLNLSF---LDD--AKPII-GSS----HAVPFLVELCKGK---TEHQCKLDALHALYNLST 374 (565)
Q Consensus 308 ~~Lv~lL~s~~~~~~A~aaL~nLs~---~~~--~k~~I-~~~----g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nLs~ 374 (565)
+.|...|...- .++..-...+. ... +...+ .+. ..+..++.+++-. .+.......+.-++.+|.
T Consensus 110 ~~L~~wl~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~ 186 (464)
T PF11864_consen 110 PFLLSWLEPSY---QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICK 186 (464)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Confidence 88888775321 11111111111 101 11110 112 2344444444422 134445555555555653
Q ss_pred CCCChH------H----HHHcCch-----HHHhhccCC--CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437 375 IPSNIP------N----LLSAGII-----SGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437 (565)
Q Consensus 375 ~~~nk~------~----iv~~G~v-----~~Lv~Ll~~--~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL 437 (565)
...+.. . ++..|.| +.++..|.. +...+.+.+-.++.||+...-+... +..|..+|
T Consensus 187 ~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~-------i~~L~~iL 259 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA-------IRTLCDIL 259 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH-------HHHHHHHH
Confidence 332221 1 2223333 334442221 2235567788889999887655444 34567777
Q ss_pred hc------CCHHHHHHHHHHHHHhhcCChHHH-HHHHhCC--cHHHHHHhhhcCChhHH
Q 008437 438 DT------GELIEQEQAVSCLFLLCNGNEKCC-QMVLQEG--VIPALVSISVNGSTRGR 487 (565)
Q Consensus 438 ~~------~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G--~v~~Lv~L~~~~s~~~k 487 (565)
.. .+..+-.-|+.+|..+.....+.. ..+--.- +++.|...+..+++++-
T Consensus 260 ~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~ 318 (464)
T PF11864_consen 260 RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVD 318 (464)
T ss_pred cccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeeh
Confidence 32 234455678888877665552111 1111122 66667665555555443
No 425
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=26.13 E-value=67 Score=29.54 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 430 VSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 430 v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
|..|+.+|.+.++...+.|+.+|.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk 119 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALK 119 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455555554444444555555543
No 426
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.65 E-value=6.9e+02 Score=25.04 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=43.4
Q ss_pred HcCchHHHhhccCCCCh--------HHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHHHHH
Q 008437 384 SAGIISGLQSLAVPGDP--------MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLF 453 (565)
Q Consensus 384 ~~G~v~~Lv~Ll~~~~~--------~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~~L~ 453 (565)
+.-+.+.|++++..++. .+.+..-.+|+.++. |-+..|-+++.+. +.-+|-.|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 44578888886643321 233444444444443 5667777777653 5567888888888
Q ss_pred HhhcCChHHHHHHH
Q 008437 454 LLCNGNEKCCQMVL 467 (565)
Q Consensus 454 ~Lc~~~~~~~~~v~ 467 (565)
.+....+..+..++
T Consensus 139 ~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 139 FLVHEGPISREEVI 152 (249)
T ss_pred HHHHcCCCCHHHHH
Confidence 88776654444433
No 427
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=25.64 E-value=33 Score=36.13 Aligned_cols=44 Identities=18% Similarity=0.505 Sum_probs=34.8
Q ss_pred CcccccccccccC--Cce--ecCCCcccchHHHHHHHhc-CCCCCCCCC
Q 008437 71 EELRCPISLQLMY--DPV--IIASGQTYERICIEKWLSD-GHSTCPKTQ 114 (565)
Q Consensus 71 ~~f~CpI~~~~m~--dPV--~~~~g~ty~r~~I~~~~~~-~~~~cP~t~ 114 (565)
-++.|-.|++..- |-- -+||.|.|--.|++.++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3578999998753 222 4689999999999999864 568899997
No 428
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=25.59 E-value=1.2e+03 Score=27.86 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=86.2
Q ss_pred cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcC--CcH--HHHHHHHHHHhcCC
Q 008437 258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN--SNS--HGAATALYLNLSFL 333 (565)
Q Consensus 258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s--~~~--~~~A~aaL~nLs~~ 333 (565)
.+++..|.++... ...++...-..+|.....-+ --.....++-+.|.++.+... .+. ...+--++..|+..
T Consensus 529 p~ild~L~qlas~----~s~evl~llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 529 PMILDGLLQLASK----SSDEVLVLLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred hHHHHHHHHHccc----ccHHHHHHHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 6667777777754 23444444445566655433 344455566778887776532 222 23344455555443
Q ss_pred CCCchhhccCCchHHHHHHhcCCC---CHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhh-ccCCCChHHHHHHHH
Q 008437 334 DDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLA 408 (565)
Q Consensus 334 ~~~k~~I~~~g~i~~Lv~lL~~~~---~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~ 408 (565)
.++..-+. .-.||.|+.+|.... ......-|+..|-.+..+. .--....-.-+.|++.+ .+.+++..+...+-.
T Consensus 604 ~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~E 682 (1005)
T KOG2274|consen 604 AANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATE 682 (1005)
T ss_pred HHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHH
Confidence 22222221 347899999998651 2445555666666555433 22333344457888888 566667777677777
Q ss_pred HHHHHhcC
Q 008437 409 VLLNLAAS 416 (565)
Q Consensus 409 ~L~nLa~~ 416 (565)
+|+.+...
T Consensus 683 cLra~Is~ 690 (1005)
T KOG2274|consen 683 CLRALISV 690 (1005)
T ss_pred HHHHHHhc
Confidence 77766653
No 429
>PRK05978 hypothetical protein; Provisional
Probab=25.39 E-value=39 Score=31.04 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=21.1
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
-+||-|++ |+-|. .+++ -+.+||.|++++.+
T Consensus 34 grCP~CG~----------G~LF~-----g~Lk-v~~~C~~CG~~~~~ 64 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLK-PVDHCAACGEDFTH 64 (148)
T ss_pred CcCCCCCC----------Ccccc-----cccc-cCCCccccCCcccc
Confidence 46898885 44442 3444 37789999988865
No 430
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=25.25 E-value=1.9e+02 Score=25.70 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhc-cCCHHHHHHHhc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGA-NGFVVALLRFLE 269 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~-~G~i~~Lv~lL~ 269 (565)
+....|.+.|... ++.++.++++.|..++.... .++..+.. .-.|..+..+=.
T Consensus 38 ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 38 ELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 5567788999886 89999999999999987654 46666655 445555555543
No 431
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.03 E-value=2.8e+02 Score=28.90 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHhcC-CCCHHHHHHHhhc---CCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------C
Q 008437 402 WTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQE-------G 470 (565)
Q Consensus 402 ~~e~al~~L~nLa~~~~~r~~i~~~-~g~v~~Lv~lL~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~-------G 470 (565)
++-.|+.+|..+...+.....++.. +..+..|++++.. ....++..|+.+|..|+....... .|+.+ |
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~-~V~~aLg~~v~HG 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCS-DVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHH-HHHHHhcCCCCcc
Confidence 3455667776677667777777654 2489999999975 367889999999999998665332 23322 6
Q ss_pred cHHHHHH
Q 008437 471 VIPALVS 477 (565)
Q Consensus 471 ~v~~Lv~ 477 (565)
+++.|+.
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6666653
No 432
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.80 E-value=1.7e+02 Score=34.62 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcC-CcHHHH-----HHHHHHH-hcCCCCCchhhccCCchHH
Q 008437 276 NSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN-SNSHGA-----ATALYLN-LSFLDDAKPIIGSSHAVPF 348 (565)
Q Consensus 276 ~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s-~~~~~~-----A~aaL~n-Ls~~~~~k~~I~~~g~i~~ 348 (565)
|++++..|+.+|.|+....++++..++. .+..+ +..+.. -.+.|.+ | ......+....+|..
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~--------~v~S~~g~~r~~l~~~~ks~~le~~l---~~mw~~Vr~ndGIki 743 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIV--------AVGSQSGDRRIFLGAGTKSAKLEQVL---RQMWEAVRGNDGIKI 743 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhh--------hccccCCCccccccCCCchHHHHHHH---HHHHHHHhcCccHHH
Confidence 7889999999998886555566554432 22211 111000 0001111 1 011344556789999
Q ss_pred HHHHhcCC---C-CHHHHHHHHHHHHHhccCCCChHHHHHc-----CchHHHhh--ccCCC---ChHHHHHHHHHHHHHh
Q 008437 349 LVELCKGK---T-EHQCKLDALHALYNLSTIPSNIPNLLSA-----GIISGLQS--LAVPG---DPMWTEKSLAVLLNLA 414 (565)
Q Consensus 349 Lv~lL~~~---~-~~~~~~~Al~aL~nLs~~~~nk~~iv~~-----G~v~~Lv~--Ll~~~---~~~~~e~al~~L~nLa 414 (565)
|++||.-. . -...+..|+.+|..|+.++..+..+.+. ..++.|+. ++.+. .......|..+|....
T Consensus 744 Ll~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~ 823 (1516)
T KOG1832|consen 744 LLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQ 823 (1516)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHh
Confidence 99999754 1 2357899999999999999988877653 34444444 33221 2334455656555544
Q ss_pred c
Q 008437 415 A 415 (565)
Q Consensus 415 ~ 415 (565)
.
T Consensus 824 g 824 (1516)
T KOG1832|consen 824 G 824 (1516)
T ss_pred C
Confidence 3
No 433
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=24.78 E-value=2.6e+02 Score=30.83 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=50.7
Q ss_pred hccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc---CC-----------CChHHHHHcCchHHHhh-ccCCCChHHHH
Q 008437 340 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST---IP-----------SNIPNLLSAGIISGLQS-LAVPGDPMWTE 404 (565)
Q Consensus 340 I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~---~~-----------~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e 404 (565)
+.+.+.|+.|+.+|....+...+.+|+..|..+.. +. +--..++....|..|+. ++.+.......
T Consensus 58 L~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lv 137 (475)
T PF04499_consen 58 LAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLV 137 (475)
T ss_pred HHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHH
Confidence 34578999999999865578888999988887742 21 11334566778888888 56422244456
Q ss_pred HHHHHHHHHhc
Q 008437 405 KSLAVLLNLAA 415 (565)
Q Consensus 405 ~al~~L~nLa~ 415 (565)
.++.+|..|..
T Consensus 138 n~v~IlieLIR 148 (475)
T PF04499_consen 138 NGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 434
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.41 E-value=2.7e+02 Score=29.76 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhh-cCChhHHHHHHHHHHHHHhhccc
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
.++..|.+.|...++.+.-.|+..|-.+..+.+ ..+..|-.......|..|+. ...++++++-+.+++...+.-..
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 467888888999999999999999988776443 45777777788888888887 67899999988888877764333
No 435
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=24.10 E-value=29 Score=25.29 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred ecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 87 IIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 87 ~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
+-.+.|-.|..|+..-+.. ...||+|+++|.
T Consensus 16 i~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LP 46 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR-SDRCPICGKPLP 46 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS-SSEETTTTEE--
T ss_pred eeecchhHHHHHHHHHhcc-ccCCCcccCcCc
Confidence 4467799999999988875 567999999885
No 436
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=23.56 E-value=2.3e+02 Score=32.60 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=78.9
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC-c--HHHHHHHHHHHhcCCCCC
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-N--SHGAATALYLNLSFLDDA 336 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-~--~~~~A~aaL~nLs~~~~~ 336 (565)
+.+.++.+|..+....+..+|+.++..+-..+..-| ...+..-++|.|-.+.... . .+.+++.++..+.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----- 457 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----- 457 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-----
Confidence 334444455444444788999999998888764322 5556666778777764322 2 2345666665555
Q ss_pred chhhccCCc---hHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCC
Q 008437 337 KPIIGSSHA---VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 399 (565)
Q Consensus 337 k~~I~~~g~---i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~ 399 (565)
+.+....+ +.++.+-.+.. ++......+.+..++.....+...++...++|.++.+...+.
T Consensus 458 -q~lD~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 458 -QRLDKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred -HHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 22222233 34444444555 788888778877788776666555555678888888765543
No 437
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=23.40 E-value=1.3e+02 Score=30.01 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=35.4
Q ss_pred cccccccccCCceecCCCcccchHHHHHHHhc-CCCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHH
Q 008437 74 RCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLPH-----LCLTPNYCVKGLIASWCE 137 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~-----~~l~pn~~l~~~i~~~~~ 137 (565)
...+-+.+.+-=- ..||+.|++.-+.+-+.. ..+.||.|+.++.+ .+..|...+.+.. +|+.
T Consensus 110 VielHG~~~~~~C-~~C~~~~~~~~~~~~~~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~-~~~~ 177 (244)
T PRK14138 110 VIELHGNVEEYYC-VRCGKRYTVEDVIEKLEKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAI-RLSS 177 (244)
T ss_pred EEEccCCcCeeEE-CCCCCcccHHHHHHHHhcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHH-HHHh
Confidence 4445555544222 248888888766654433 24789999987765 2344555554444 4443
No 438
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.11 E-value=62 Score=33.08 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=37.7
Q ss_pred CCCCCCCc-ccccccccccCC----ceecCCC--cc---cchHHHHHHHh-cCCCCCCCCCCCCCC
Q 008437 65 QMPLPPEE-LRCPISLQLMYD----PVIIASG--QT---YERICIEKWLS-DGHSTCPKTQQKLPH 119 (565)
Q Consensus 65 ~~~~~p~~-f~CpI~~~~m~d----PV~~~~g--~t---y~r~~I~~~~~-~~~~~cP~t~~~l~~ 119 (565)
+....|.+ ..|=||...+.. |+..+|. -+ .-|.|++.|+. .+..+|..|......
T Consensus 70 ~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 70 SLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred ccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 33444544 889999875532 6677654 23 45999999997 467889999876543
No 439
>PRK01343 zinc-binding protein; Provisional
Probab=23.06 E-value=59 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=18.4
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG 106 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~ 106 (565)
...||||+..+..+..--|....-.--+-+|+.++
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~ 43 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGS 43 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCC
Confidence 46799999866543222233322233345566553
No 440
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=22.95 E-value=1.6e+02 Score=29.18 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=22.7
Q ss_pred CCCcccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 008437 89 ASGQTYERICIEKWLSDG-HSTCPKTQQKLPH 119 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 119 (565)
.||+.|++..+...+..+ .+.||.|+..+.+
T Consensus 121 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 152 (235)
T cd01408 121 KCKHKYPGDWMREDIFNQEVPKCPRCGGLVKP 152 (235)
T ss_pred cCCCcCCHHHHHHHHhCCCCccCCCCCCCccC
Confidence 388889887766665443 4789999877765
No 441
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.85 E-value=5e+02 Score=32.70 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=49.3
Q ss_pred CchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 386 GIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 386 G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
+.+..++..+.+....++..|+.+|.++...+ ..++.++.+-..+-..+.+.+..++|.|+..+...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~D---p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEAD---PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRF 882 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC---hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhh
Confidence 45566666677778889999999999998754 23444445555555667778899999999999753
No 442
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.76 E-value=22 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 008437 108 STCPKTQQKLPHLCLTPNYCVKGLIASWC 136 (565)
Q Consensus 108 ~~cP~t~~~l~~~~l~pn~~l~~~i~~~~ 136 (565)
..||+|+.+|+. ++. ..+|..+.
T Consensus 21 ~~CPlC~r~l~~-----e~~-~~li~~~~ 43 (54)
T PF04423_consen 21 GCCPLCGRPLDE-----EHR-QELIKKYK 43 (54)
T ss_dssp EE-TTT--EE-H-----HHH-HHHHHHHH
T ss_pred CcCCCCCCCCCH-----HHH-HHHHHHHH
Confidence 389999987653 343 55555543
No 443
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.68 E-value=5.6e+02 Score=25.65 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=51.2
Q ss_pred hcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhc--cCCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCCC-C
Q 008437 303 AAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIG--SSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS-N 378 (565)
Q Consensus 303 ~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~--~~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~~-n 378 (565)
+..++++|+++++.++... -.++.=...++....+. ..|-++.|-+++.++ .+.=++.+|+.||..+..... .
T Consensus 71 e~~A~~~li~l~~~~~~~~---~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFL---EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred hhhhHHHHHHHHcCCcchH---HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4467999999997654210 00000001111122222 257889999999876 245688999999999987554 5
Q ss_pred hHHHHHcCchHHHhh
Q 008437 379 IPNLLSAGIISGLQS 393 (565)
Q Consensus 379 k~~iv~~G~v~~Lv~ 393 (565)
|..+++ .+..++.
T Consensus 148 Re~vi~--~f~~ll~ 160 (249)
T PF06685_consen 148 REEVIQ--YFRELLN 160 (249)
T ss_pred HHHHHH--HHHHHHH
Confidence 766665 3444444
No 444
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.56 E-value=6.7e+02 Score=23.80 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccC--------------CCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437 361 CKLDALHALYNLSTI--------------PSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 425 (565)
Q Consensus 361 ~~~~Al~aL~nLs~~--------------~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~ 425 (565)
++..|+.+|..|+.. +++ .......-+.|+. ++.+.++.++..|+.+|..|-.....--.+.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~--~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDS--VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC--CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Q ss_pred CCCC-------------------HHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCCh
Q 008437 426 TPGL-------------------VSGLATVLDT-GELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGST 484 (565)
Q Consensus 426 ~~g~-------------------v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~ 484 (565)
.... -..|+..|.. .+....-..+.+|..|....+ ...+.=+-..++..+..++.+.+.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Q ss_pred hHHHHHHHHHHHH
Q 008437 485 RGRDKAQRLLMLF 497 (565)
Q Consensus 485 ~~k~~A~~lL~~L 497 (565)
.++..+..++..+
T Consensus 160 ~v~v~~l~~~~~l 172 (182)
T PF13251_consen 160 NVRVAALSCLGAL 172 (182)
T ss_pred cHHHHHHHHHHHH
No 445
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=22.50 E-value=1.2e+02 Score=28.24 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCCcccchHHHHHHHhc-CCCCCCCCCCCCCCC-----CCcccHHHHHHHH
Q 008437 89 ASGQTYERICIEKWLSD-GHSTCPKTQQKLPHL-----CLTPNYCVKGLIA 133 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~~-----~l~pn~~l~~~i~ 133 (565)
.||+.|++..+...... ..+.||.|+..+.+. +-.| ..+.+.++
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~ 159 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIE 159 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHH
T ss_pred CCCccccchhhcccccccccccccccCccCCCCeeecCCCCH-HHHHHHHH
Confidence 48888988887766554 357899999876552 3334 45555555
No 446
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.31 E-value=2e+02 Score=25.05 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=30.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVL 467 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~ 467 (565)
+|..|+.-|.+.++.+...|+.+|...|... .....++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5777888888889999999999999999877 3333333
No 447
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=22.21 E-value=7.6e+02 Score=24.29 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC
Q 008437 277 SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 356 (565)
Q Consensus 277 ~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~ 356 (565)
...-..++..+..|.. .++....+.+.+.++-+.+.|..-+. .+.... ... ++...
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~----------~~g~~~-~~~------------lfs~~ 133 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDP----------MSGITA-HDP------------LFSPQ 133 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhh----------hcCCcc-ccc------------ccCHH
Confidence 4445666777777764 45555555566777776666542221 011000 000 01000
Q ss_pred -CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHH-HH
Q 008437 357 -TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSG-LA 434 (565)
Q Consensus 357 -~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~-Lv 434 (565)
.+......=...|.-||.+......+-+.|+...+..++...+. .....-+|.+|=-.-+ |-... |-
T Consensus 134 ~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~---------~~~R~iLs 202 (226)
T PF14666_consen 134 RLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD---------GHPRIILS 202 (226)
T ss_pred HHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc---------cHHHHHHH
Confidence 01112233345566777777777777778888888887655433 2334445555533322 22333 33
Q ss_pred HHhhcCCHHHHHHHHHHHHHhhc
Q 008437 435 TVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 435 ~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
+.|..++..++-.|...|..+.+
T Consensus 203 KaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 203 KALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc
Confidence 44777888999999888876643
No 448
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.11 E-value=1.3e+02 Score=26.13 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=32.7
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS 384 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~ 384 (565)
+|+.||.-|.+. ++++...|+.+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578899999888 889999999999999988766666654
No 449
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=1.4e+03 Score=27.47 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=63.4
Q ss_pred cCchHHHHHHhcC------C--cHH--HHHHHHHHHhc----CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 304 AGVIPLLEKMISN------S--NSH--GAATALYLNLS----FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 304 ~G~i~~Lv~lL~s------~--~~~--~~A~aaL~nLs----~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
.|.++.++.+|.+ + +.+ +-|..++.+|+ .....+..+. .=.+..+.-.+++. .--.+..||++|
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE-~flv~hVfP~f~s~-~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQME-YFLVNHVFPEFQSP-YGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHH-HHHHHHhhHhhcCc-hhHHHHHHHHHH
Confidence 3677888888862 1 122 22444444443 1222233322 11234444455665 556788999999
Q ss_pred HHhcc-CCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcc-cHHHHhc
Q 008437 370 YNLST-IPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNS 425 (565)
Q Consensus 370 ~nLs~-~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~-~r~~i~~ 425 (565)
...|. +-.+...+.+ +++.... |..+.+..++-.|+-+|.-+..+.+ ....+..
T Consensus 487 ~~~~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHHhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 99984 3344433332 4455555 4446666777677777776666444 3344543
No 450
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=21.84 E-value=95 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.490 Sum_probs=14.8
Q ss_pred CCCcccchHHHHHHHhcCC-CCCCCC
Q 008437 89 ASGQTYERICIEKWLSDGH-STCPKT 113 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~~~-~~cP~t 113 (565)
.|+..+=..|++++|.... ..||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 3777888999999998533 469986
No 451
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=21.81 E-value=33 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=5.2
Q ss_pred ccccccccccCC
Q 008437 73 LRCPISLQLMYD 84 (565)
Q Consensus 73 f~CpI~~~~m~d 84 (565)
|.||+|+..+.+
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 456666555443
No 452
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.75 E-value=72 Score=27.62 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCCCchhhccCCchHHHHHHhcCC
Q 008437 324 TALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 356 (565)
Q Consensus 324 ~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~ 356 (565)
+..+..|+..++.-..+++.|+++.|+.||.+.
T Consensus 67 Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 67 IKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 333444454444444444555556666665554
No 453
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.70 E-value=5.3e+02 Score=23.24 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHH-HHHhhhc---CChhHHHHHHHHHHHHHhh
Q 008437 428 GLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPA-LVSISVN---GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 428 g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~-Lv~L~~~---~s~~~k~~A~~lL~~L~~~ 500 (565)
.++..|-+.|.. .++.++-.|+.+|-.+..+.+ .....+.....+.. |+.+... ....+|.+...+++.....
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 355667777764 478899999998888777554 55677777788886 8887653 2357888888888777654
No 454
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=21.59 E-value=57 Score=27.31 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437 106 GHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 140 (565)
Q Consensus 106 ~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 140 (565)
+...||.|+++|.-.+++| |-.|...+|
T Consensus 32 ~rS~C~~C~~~L~~~~lIP-------i~S~l~lrG 59 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLIP-------ILSYLLLRG 59 (92)
T ss_pred CCCcCcCCCCcCcccccch-------HHHHHHhCC
Confidence 4678999999999999999 456766666
No 455
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.95 E-value=1.3e+03 Score=26.62 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=78.9
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
.-|.-|+.+|.+. +....+.+-..|..+..... .. -.|..||+ .+..++.. ++.+|..+= .+-.+.
T Consensus 4 ~~~~~l~~~l~s~-~~~~~~~~~~~~~~~~~~~~--~~----~l~~~l~~y~~~t~s~~----~~~il~~~~-~P~~K~- 70 (668)
T PF04388_consen 4 ASITELLSLLESN-DLSVLEEIKALLQELLNSDR--EP----WLVNGLVDYYLSTNSQR----ALEILVGVQ-EPHDKH- 70 (668)
T ss_pred ccHHHHHHHhcCC-chhhHHHHHHHHHHHhhccc--hH----HHHHHHHHHHhhcCcHH----HHHHHHhcC-CccHHH-
Confidence 3567888999988 77777777777766544321 11 23566777 45444333 555555331 111111
Q ss_pred HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHh-hhcCChhHHHHHHHHHHHH
Q 008437 423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSI-SVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L-~~~~s~~~k~~A~~lL~~L 497 (565)
....|-..+. .+..+-.|+..|..+.+..+-+.-.+.+..+++.|+.. ..+.+..+-..|..+|-+|
T Consensus 71 ------~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 71 ------LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred ------HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 1222333333 45677788888888887766677778888888888864 4445555556666555544
No 456
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.92 E-value=3.5e+02 Score=27.39 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccch-hhhhccCCHHHHHHHhccccc--------CCCHHHHHHHHHHH
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVC--------ERNSYAQEIGAMAL 287 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~--------s~~~~~q~~A~~aL 287 (565)
.++.++..+.+. +.+.|..++..|..+...-+... ..+...|....+-..|..... .+...+...|.-+|
T Consensus 120 iiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 457778888877 89999999999999986544322 336667766666555543221 23445666677777
Q ss_pred HHhh
Q 008437 288 FNLA 291 (565)
Q Consensus 288 ~nLa 291 (565)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7763
No 457
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=20.31 E-value=77 Score=39.81 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=28.0
Q ss_pred CCCCCcccccccc--cccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 67 PLPPEELRCPISL--QLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 67 ~~~p~~f~CpI~~--~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
..+|.+|+||=|. +.+.|. .+-||.-. ....||.|+.++..
T Consensus 903 dPL~phy~C~~C~~~ef~~~~-~~~sG~Dl-----------pdk~Cp~Cg~~~~k 945 (1437)
T PRK00448 903 NPLPPHYVCPNCKYSEFFTDG-SVGSGFDL-----------PDKDCPKCGTKLKK 945 (1437)
T ss_pred CCCCccccCcccccccccccc-cccccccC-----------ccccCccccccccc
Confidence 3456799999998 555555 33455332 46789999988753
No 458
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.24 E-value=76 Score=30.01 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=31.1
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLIASWCE 137 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pn~~l~~~i~~~~~ 137 (565)
.+..|.||.|.-- .||+. .+.. .++||.||..|...+-. -...+.+.|+..-.
T Consensus 110 ~~~~y~C~~~~~r----------~sfde-----A~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 110 ENNYYVCPNCHVK----------YSFDE-----AMEL-GFTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred cCCceeCCCCCCc----------ccHHH-----HHHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 3568999887642 23443 3333 48999999998654432 23345555554433
No 459
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=20.17 E-value=39 Score=33.90 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.4
Q ss_pred CcccccccccccCCce
Q 008437 71 EELRCPISLQLMYDPV 86 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV 86 (565)
--|.|+||+-+|..++
T Consensus 272 iG~VCSVCLSVfC~~~ 287 (314)
T KOG2487|consen 272 IGFVCSVCLSVFCRFV 287 (314)
T ss_pred eeeehHHHHHHhhCCC
Confidence 3488999999887763
No 460
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=20.15 E-value=78 Score=39.08 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=27.8
Q ss_pred CCCCCcccccccc--cccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 67 PLPPEELRCPISL--QLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 67 ~~~p~~f~CpI~~--~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
..+|.+|+||=|. +...|. ...||.-. ....||.|+.++..
T Consensus 678 dPL~phy~c~~c~~~ef~~~~-~~~sg~dl-----------p~k~cp~c~~~~~~ 720 (1213)
T TIGR01405 678 NPLPPHYLCPNCKYSEFITDG-SVGSGFDL-----------PDKDCPKCGAPLKK 720 (1213)
T ss_pred CCCcccccCcccccccccccc-cccccccC-----------ccccCccccccccc
Confidence 3456799999998 455555 33455332 46789999988743
No 461
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=20.03 E-value=1.8e+02 Score=28.31 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=27.2
Q ss_pred cccccccccCCceecCCCcccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 008437 74 RCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLPH 119 (565)
Q Consensus 74 ~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 119 (565)
...+-+.++.-=-+ .||+.|.+..+...... ..+.||.|+..+.+
T Consensus 100 v~elHG~~~~~~C~-~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP 145 (218)
T cd01407 100 VIELHGSLFRVRCT-KCGKEYPRDELQADIDREEVPRCPKCGGLLRP 145 (218)
T ss_pred EEECcCCcCcceeC-CCcCCCcHHHHhHhhccCCCCcCCCCCCccCC
Confidence 34444444442222 58888877765444433 35789999988766
Done!