Query 008437
Match_columns 565
No_of_seqs 456 out of 2604
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.7E-31 5.7E-36 279.1 18.5 270 232-504 47-339 (354)
2 3nmz_A APC variant protein; pr 100.0 1.7E-30 5.8E-35 279.6 18.3 267 234-503 165-454 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 1.1E-29 3.8E-34 274.6 20.7 277 217-500 3-361 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 4.4E-29 1.5E-33 274.7 22.1 280 216-501 48-386 (584)
5 3nmz_A APC variant protein; pr 100.0 7.6E-28 2.6E-32 258.9 22.2 281 216-498 70-407 (458)
6 1xm9_A Plakophilin 1; armadill 100.0 1.6E-27 5.4E-32 257.8 23.2 276 216-500 44-450 (457)
7 3ul1_B Importin subunit alpha- 100.0 6.8E-27 2.3E-31 256.2 25.8 279 216-500 100-388 (510)
8 3tpo_A Importin subunit alpha- 100.0 1.5E-26 5E-31 254.6 27.4 279 216-500 119-407 (529)
9 3now_A UNC-45 protein, SD10334 99.9 1.3E-26 4.4E-31 263.1 23.9 278 216-499 421-737 (810)
10 3ul1_B Importin subunit alpha- 99.9 3.3E-26 1.1E-30 250.8 25.2 279 217-499 58-345 (510)
11 3l6x_A Catenin delta-1; cateni 99.9 3.3E-26 1.1E-30 251.9 23.3 275 216-498 90-475 (584)
12 3nmw_A APC variant protein; AR 99.9 7.9E-27 2.7E-31 243.7 16.9 241 216-461 73-338 (354)
13 3tpo_A Importin subunit alpha- 99.9 7.8E-25 2.7E-29 240.8 27.9 280 216-499 76-364 (529)
14 3now_A UNC-45 protein, SD10334 99.9 1.9E-25 6.4E-30 253.6 22.9 282 216-505 495-788 (810)
15 4hxt_A De novo protein OR329; 99.9 7.5E-25 2.6E-29 215.0 23.5 242 259-506 2-248 (252)
16 4b8j_A Importin subunit alpha- 99.9 1.7E-24 5.9E-29 237.2 28.7 279 216-499 74-358 (528)
17 4b8j_A Importin subunit alpha- 99.9 3E-24 1E-28 235.3 29.8 279 216-500 117-401 (528)
18 4db8_A Armadillo-repeat protei 99.9 6.8E-25 2.3E-29 216.5 17.9 236 216-458 12-252 (252)
19 4hxt_A De novo protein OR329; 99.9 2.2E-24 7.5E-29 211.6 21.1 238 216-460 2-244 (252)
20 4db8_A Armadillo-repeat protei 99.9 3.6E-24 1.2E-28 211.3 18.9 235 258-498 11-250 (252)
21 1wa5_B Importin alpha subunit; 99.9 3.4E-23 1.2E-27 227.3 28.6 279 216-500 130-413 (530)
22 2jdq_A Importin alpha-1 subuni 99.9 8.7E-23 3E-27 217.7 31.0 278 216-500 64-348 (450)
23 1wa5_B Importin alpha subunit; 99.9 5.2E-23 1.8E-27 225.8 29.4 278 216-499 87-370 (530)
24 2z6h_A Catenin beta-1, beta-ca 99.9 1.6E-23 5.5E-28 235.6 24.1 275 216-498 56-335 (644)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.6E-23 5.4E-28 228.4 23.2 276 216-499 59-339 (529)
26 3tt9_A Plakophilin-2; cell adh 99.9 4E-24 1.4E-28 209.7 14.7 193 260-458 9-230 (233)
27 2jdq_A Importin alpha-1 subuni 99.9 8.5E-22 2.9E-26 210.0 28.1 275 218-499 22-305 (450)
28 1jdh_A Beta-catenin; beta-cate 99.9 3.1E-22 1E-26 218.2 24.7 275 216-499 101-385 (529)
29 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-23 6.5E-28 204.9 11.4 194 217-416 9-230 (233)
30 2z6g_A B-catenin; FULL-length, 99.9 8.4E-22 2.9E-26 226.4 24.5 275 216-498 192-471 (780)
31 2z6h_A Catenin beta-1, beta-ca 99.9 1.7E-21 6E-26 219.0 25.6 275 216-499 98-382 (644)
32 2z6g_A B-catenin; FULL-length, 99.9 4.9E-21 1.7E-25 220.0 24.5 275 217-501 361-665 (780)
33 1wgm_A Ubiquitin conjugation f 99.9 4.3E-22 1.5E-26 168.8 9.2 79 64-143 14-93 (98)
34 2kr4_A Ubiquitin conjugation f 99.9 2.1E-22 7.1E-27 166.4 6.9 76 64-140 6-81 (85)
35 3opb_A SWI5-dependent HO expre 99.9 1.2E-20 3.9E-25 211.0 23.0 246 251-501 449-730 (778)
36 4db6_A Armadillo repeat protei 99.9 8E-21 2.7E-25 182.1 18.6 197 256-458 9-210 (210)
37 4db6_A Armadillo repeat protei 99.9 5.8E-21 2E-25 183.1 17.0 193 217-415 13-209 (210)
38 2kre_A Ubiquitin conjugation f 99.9 3E-22 1E-26 170.4 6.5 76 64-140 21-96 (100)
39 2f42_A STIP1 homology and U-bo 99.8 2E-21 6.8E-26 181.3 8.0 78 66-143 100-177 (179)
40 1t1h_A Gspef-atpub14, armadill 99.8 4.1E-20 1.4E-24 150.1 6.6 76 67-142 3-78 (78)
41 1xqr_A HSPBP1 protein; armadil 99.8 2E-18 6.7E-23 175.8 17.3 236 216-457 28-287 (296)
42 3opb_A SWI5-dependent HO expre 99.8 3.2E-18 1.1E-22 191.3 19.7 280 213-498 331-682 (778)
43 2c2l_A CHIP, carboxy terminus 99.8 1.8E-19 6.2E-24 181.6 6.2 78 65-142 201-278 (281)
44 2yu4_A E3 SUMO-protein ligase 99.8 5.4E-19 1.9E-23 148.8 5.8 74 69-142 4-86 (94)
45 1xqr_A HSPBP1 protein; armadil 99.7 1.5E-17 5.3E-22 169.1 15.9 179 320-500 57-239 (296)
46 3m62_A Ubiquitin conjugation f 99.7 3.1E-18 1.1E-22 193.2 4.5 106 35-141 833-960 (968)
47 2bay_A PRE-mRNA splicing facto 99.6 3.3E-17 1.1E-21 126.0 2.3 55 72-127 3-58 (61)
48 3ztg_A E3 ubiquitin-protein li 99.6 6.5E-16 2.2E-20 129.3 9.1 77 66-142 7-86 (92)
49 3fl2_A E3 ubiquitin-protein li 99.5 1.6E-14 5.5E-19 127.7 6.2 69 69-137 49-118 (124)
50 3htk_C E3 SUMO-protein ligase 99.5 6.2E-15 2.1E-19 143.7 3.6 70 69-138 178-251 (267)
51 3grl_A General vesicular trans 99.5 1.3E-12 4.6E-17 142.7 20.1 274 216-497 21-340 (651)
52 1z6u_A NP95-like ring finger p 99.5 2.4E-14 8.3E-19 130.8 5.1 69 69-137 75-144 (150)
53 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.4E-18 116.9 5.1 70 69-139 19-89 (99)
54 2egp_A Tripartite motif-contai 99.4 2.3E-14 7.8E-19 116.1 -1.6 67 66-132 6-78 (79)
55 2ecw_A Tripartite motif-contai 99.4 1.2E-13 4.2E-18 113.2 2.7 67 66-132 13-84 (85)
56 2yur_A Retinoblastoma-binding 99.4 8.1E-13 2.8E-17 105.8 6.9 62 64-125 7-71 (74)
57 2ckl_A Polycomb group ring fin 99.4 3.1E-13 1E-17 116.5 4.7 68 68-136 11-83 (108)
58 2csy_A Zinc finger protein 183 99.4 2.8E-13 9.6E-18 110.4 4.1 66 66-133 9-74 (81)
59 2ecv_A Tripartite motif-contai 99.4 1.8E-13 6.2E-18 112.2 2.6 67 66-132 13-84 (85)
60 3lrq_A E3 ubiquitin-protein li 99.4 3.6E-13 1.2E-17 114.4 4.4 71 69-139 19-90 (100)
61 3hct_A TNF receptor-associated 99.3 4.4E-13 1.5E-17 117.4 4.2 69 67-135 13-81 (118)
62 1jm7_B BARD1, BRCA1-associated 99.3 4E-13 1.4E-17 117.5 3.9 68 69-139 19-87 (117)
63 2ecy_A TNF receptor-associated 99.3 1.6E-12 5.4E-17 101.5 6.5 57 66-122 9-65 (66)
64 3l11_A E3 ubiquitin-protein li 99.3 3.1E-13 1.1E-17 117.8 2.5 69 69-137 12-87 (115)
65 2djb_A Polycomb group ring fin 99.3 2.1E-12 7.2E-17 102.7 7.1 61 64-125 7-68 (72)
66 2ckl_B Ubiquitin ligase protei 99.3 5.8E-13 2E-17 123.7 4.1 70 68-137 50-121 (165)
67 3grl_A General vesicular trans 99.3 1.8E-10 6.3E-15 126.0 23.7 278 216-498 60-393 (651)
68 1jm7_A BRCA1, breast cancer ty 99.3 1.5E-12 5.2E-17 112.6 4.4 68 70-137 19-88 (112)
69 4ayc_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 114.7 4.1 64 70-136 51-114 (138)
70 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.8E-16 98.6 6.1 57 66-122 14-72 (73)
71 3hcs_A TNF receptor-associated 99.2 6.7E-12 2.3E-16 117.0 4.7 69 67-135 13-81 (170)
72 1g25_A CDK-activating kinase a 99.2 9.4E-12 3.2E-16 96.8 4.4 55 71-125 2-61 (65)
73 1rmd_A RAG1; V(D)J recombinati 99.2 8.7E-12 3E-16 108.7 4.2 66 69-134 20-86 (116)
74 3knv_A TNF receptor-associated 99.2 2.2E-12 7.5E-17 116.5 0.4 66 68-133 27-101 (141)
75 2ysj_A Tripartite motif-contai 99.2 2.6E-11 8.9E-16 93.6 5.9 48 66-113 14-63 (63)
76 2ecj_A Tripartite motif-contai 99.1 6.9E-11 2.4E-15 89.4 5.3 48 66-113 9-58 (58)
77 3ltm_A Alpha-REP4; protein eng 99.1 5E-09 1.7E-13 99.9 19.0 188 257-502 17-206 (211)
78 3ng2_A RNF4, snurf, ring finge 99.1 3.5E-11 1.2E-15 95.1 3.1 57 69-126 7-70 (71)
79 2d8t_A Dactylidin, ring finger 99.1 5.4E-11 1.9E-15 94.2 4.1 51 68-119 11-61 (71)
80 2ct2_A Tripartite motif protei 99.1 1.7E-10 5.7E-15 95.1 6.8 56 65-120 8-69 (88)
81 3ltm_A Alpha-REP4; protein eng 99.1 7.6E-09 2.6E-13 98.6 19.4 186 216-460 19-206 (211)
82 1oyz_A Hypothetical protein YI 99.1 5.8E-09 2E-13 104.0 19.3 222 217-497 24-248 (280)
83 3ltj_A Alpharep-4; protein eng 99.0 1.4E-08 4.9E-13 95.9 20.2 182 216-456 14-197 (201)
84 2ea6_A Ring finger protein 4; 99.0 2.5E-10 8.4E-15 89.5 4.7 53 66-119 9-68 (69)
85 2xeu_A Ring finger protein 4; 99.0 8.4E-11 2.9E-15 90.7 2.0 54 71-125 2-62 (64)
86 3ltj_A Alpharep-4; protein eng 99.0 1.5E-08 5.1E-13 95.8 17.8 185 256-498 11-197 (201)
87 2ect_A Ring finger protein 126 99.0 4.4E-10 1.5E-14 90.5 5.9 58 67-125 10-70 (78)
88 1e4u_A Transcriptional repress 98.9 7.2E-10 2.4E-14 89.3 5.5 55 68-122 7-65 (78)
89 1oyz_A Hypothetical protein YI 98.8 1.7E-07 5.8E-12 93.3 18.7 198 256-498 20-220 (280)
90 2ecn_A Ring finger protein 141 98.8 1.1E-09 3.9E-14 86.1 1.9 54 66-121 9-62 (70)
91 1chc_A Equine herpes virus-1 r 98.8 3.4E-09 1.2E-13 82.8 4.4 48 71-119 4-52 (68)
92 4ap4_A E3 ubiquitin ligase RNF 98.8 1.6E-09 5.3E-14 96.1 2.7 55 70-125 5-66 (133)
93 2ep4_A Ring finger protein 24; 98.8 7.2E-09 2.5E-13 82.4 6.0 53 66-119 9-64 (74)
94 2ecm_A Ring finger and CHY zin 98.8 4.1E-09 1.4E-13 78.6 4.3 47 71-118 4-54 (55)
95 1bor_A Transcription factor PM 98.8 1.7E-09 5.8E-14 81.4 2.0 46 70-119 4-49 (56)
96 2kiz_A E3 ubiquitin-protein li 98.7 1E-08 3.6E-13 80.3 5.8 51 68-119 10-63 (69)
97 4fdd_A Transportin-1; heat rep 98.7 2.2E-07 7.4E-12 107.3 17.8 270 216-501 128-431 (852)
98 4fdd_A Transportin-1; heat rep 98.7 7.3E-08 2.5E-12 111.3 13.5 270 216-499 215-512 (852)
99 2l0b_A E3 ubiquitin-protein li 98.7 1.1E-08 3.9E-13 84.9 4.8 50 69-119 37-89 (91)
100 1iym_A EL5; ring-H2 finger, ub 98.7 1.2E-08 4E-13 76.1 3.9 48 70-118 3-54 (55)
101 1x4j_A Ring finger protein 38; 98.7 1.1E-08 3.8E-13 81.6 3.9 49 70-119 21-72 (75)
102 4gmo_A Putative uncharacterize 98.6 9.8E-08 3.4E-12 107.8 12.4 191 306-499 35-258 (684)
103 4gmo_A Putative uncharacterize 98.6 5.7E-08 1.9E-12 109.7 10.4 155 344-500 34-215 (684)
104 1v87_A Deltex protein 2; ring- 98.6 1.8E-08 6.1E-13 87.2 4.7 50 70-119 23-94 (114)
105 1ibr_B P95, importin beta-1 su 98.6 7E-07 2.4E-11 94.4 16.4 278 216-503 128-441 (462)
106 4ic3_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 81.5 1.6 45 70-119 22-67 (74)
107 1b3u_A Protein (protein phosph 98.5 4.7E-07 1.6E-11 98.9 14.1 259 218-498 326-586 (588)
108 2y1n_A E3 ubiquitin-protein li 98.5 2.4E-08 8.3E-13 103.4 3.2 49 72-120 332-380 (389)
109 1b3u_A Protein (protein phosph 98.5 1.3E-06 4.5E-11 95.3 16.5 262 218-499 166-431 (588)
110 2vgl_B AP-2 complex subunit be 98.5 3.2E-06 1.1E-10 93.7 19.5 262 217-498 122-418 (591)
111 4ap4_A E3 ubiquitin ligase RNF 98.5 2.2E-08 7.6E-13 88.6 1.1 57 69-126 69-132 (133)
112 2vgl_B AP-2 complex subunit be 98.4 6.9E-06 2.4E-10 91.0 20.2 258 219-499 89-382 (591)
113 2ecg_A Baculoviral IAP repeat- 98.4 7.3E-08 2.5E-12 76.9 2.6 45 70-119 23-68 (75)
114 1wim_A KIAA0161 protein; ring 98.4 5.6E-08 1.9E-12 81.1 1.0 66 71-137 4-83 (94)
115 2ecl_A Ring-box protein 2; RNF 98.3 3.2E-07 1.1E-11 74.3 3.5 48 71-119 14-76 (81)
116 1w63_A Adapter-related protein 98.2 2.9E-05 9.8E-10 86.5 18.5 249 217-498 143-413 (618)
117 2vje_A E3 ubiquitin-protein li 98.2 7.4E-07 2.5E-11 68.7 3.6 47 71-118 7-56 (64)
118 2vje_B MDM4 protein; proto-onc 98.2 1.1E-06 3.8E-11 67.5 3.5 47 71-118 6-55 (63)
119 3dpl_R Ring-box protein 1; ubi 98.1 1.7E-06 5.9E-11 73.6 4.2 46 72-118 37-100 (106)
120 1qgr_A Protein (importin beta 98.1 0.00012 4E-09 83.9 20.9 276 216-502 128-440 (876)
121 3b2a_A TON_1937, putative unch 98.1 4E-05 1.4E-09 73.4 13.9 211 216-449 33-253 (265)
122 3t6p_A Baculoviral IAP repeat- 98.1 6.2E-07 2.1E-11 92.3 1.4 45 70-119 293-338 (345)
123 2ea5_A Cell growth regulator w 98.1 5E-06 1.7E-10 64.8 6.3 47 68-119 11-58 (68)
124 1u6g_C TIP120 protein, CAND1; 98.1 1.7E-05 5.9E-10 95.1 13.7 268 217-501 7-286 (1230)
125 2yho_A E3 ubiquitin-protein li 98.1 6.8E-07 2.3E-11 72.0 0.9 45 70-119 16-61 (79)
126 1qgr_A Protein (importin beta 98.1 3.6E-05 1.2E-09 88.2 15.2 275 217-501 173-481 (876)
127 2bpt_A Importin beta-1 subunit 98.0 7.7E-05 2.6E-09 85.3 17.4 270 218-502 226-532 (861)
128 3dad_A FH1/FH2 domain-containi 98.0 7.5E-05 2.6E-09 75.6 13.5 151 347-498 121-285 (339)
129 2d8s_A Cellular modulator of i 97.9 1.2E-05 4.2E-10 64.7 6.0 50 70-119 13-70 (80)
130 2bpt_A Importin beta-1 subunit 97.9 0.0003 1E-08 80.4 20.0 277 216-503 134-444 (861)
131 1ibr_B P95, importin beta-1 su 97.9 5.3E-05 1.8E-09 79.8 12.7 234 217-459 173-439 (462)
132 1w63_A Adapter-related protein 97.9 0.00053 1.8E-08 76.3 21.1 254 218-500 36-343 (618)
133 2qk2_A LP04448P; mini spindles 97.9 0.00011 3.9E-09 71.2 13.6 179 220-416 19-206 (242)
134 3b2a_A TON_1937, putative unch 97.8 0.00054 1.9E-08 65.6 16.0 222 260-499 34-261 (265)
135 2vgl_A Adaptor protein complex 97.8 0.0014 4.7E-08 73.0 21.5 252 217-498 147-432 (621)
136 2qk2_A LP04448P; mini spindles 97.7 0.00024 8.1E-09 68.9 12.2 183 309-502 19-208 (242)
137 4a0k_B E3 ubiquitin-protein li 97.7 5.2E-06 1.8E-10 71.8 0.0 45 73-118 49-111 (117)
138 2qk1_A Protein STU2; STU2P, XM 97.7 0.0003 1E-08 69.0 12.1 187 220-415 20-220 (249)
139 1u6g_C TIP120 protein, CAND1; 97.5 0.0017 5.8E-08 77.7 18.9 269 216-500 133-464 (1230)
140 1te4_A Conserved protein MTH18 97.5 9.2E-06 3.2E-10 71.4 -0.8 118 344-495 12-129 (131)
141 2qk1_A Protein STU2; STU2P, XM 97.3 0.0016 5.6E-08 63.7 12.1 185 311-501 22-222 (249)
142 2iw3_A Elongation factor 3A; a 97.0 0.014 4.6E-07 67.7 17.8 262 218-503 56-328 (986)
143 2vgl_A Adaptor protein complex 97.0 0.014 4.7E-07 64.9 17.0 258 217-499 75-398 (621)
144 1te4_A Conserved protein MTH18 97.0 0.00066 2.3E-08 59.3 5.1 88 345-454 43-130 (131)
145 1ho8_A Vacuolar ATP synthase s 97.0 0.065 2.2E-06 56.8 20.8 220 277-498 182-475 (480)
146 4ady_A RPN2, 26S proteasome re 96.9 0.027 9.1E-07 64.7 19.0 220 231-498 451-675 (963)
147 3dad_A FH1/FH2 domain-containi 96.9 0.011 3.8E-07 59.8 13.3 151 217-374 119-286 (339)
148 2ct0_A Non-SMC element 1 homol 96.7 0.0016 5.5E-08 51.3 4.7 47 72-118 15-63 (74)
149 2db0_A 253AA long hypothetical 96.6 0.25 8.5E-06 45.7 19.0 211 258-498 31-245 (253)
150 3tjz_B Coatomer subunit gamma; 96.5 0.045 1.5E-06 56.3 15.4 248 217-504 69-321 (355)
151 3oc3_A Helicase MOT1, MOT1; re 96.5 0.027 9.4E-07 60.4 13.8 251 211-495 170-432 (800)
152 4ady_A RPN2, 26S proteasome re 96.5 0.4 1.4E-05 55.2 24.0 168 260-459 508-678 (963)
153 1vyx_A ORF K3, K3RING; zinc-bi 96.4 0.0029 9.8E-08 47.7 4.2 47 72-118 6-58 (60)
154 2iw3_A Elongation factor 3A; a 96.3 0.41 1.4E-05 55.4 22.9 219 217-455 96-322 (986)
155 3tjz_B Coatomer subunit gamma; 96.1 0.05 1.7E-06 55.9 13.1 211 218-461 106-320 (355)
156 3i2d_A E3 SUMO-protein ligase 96.1 0.0036 1.2E-07 64.0 4.3 62 72-133 249-314 (371)
157 3vk6_A E3 ubiquitin-protein li 96.0 0.0045 1.5E-07 51.0 3.7 46 74-119 3-49 (101)
158 4ffb_C Protein STU2; tubulin f 95.8 0.091 3.1E-06 51.7 13.0 184 221-416 14-213 (278)
159 2db0_A 253AA long hypothetical 95.8 1.2 4.1E-05 41.2 21.8 212 216-457 32-246 (253)
160 3k1l_B Fancl; UBC, ring, RWD, 95.6 0.0024 8.4E-08 64.4 0.4 47 72-118 308-372 (381)
161 4fo9_A E3 SUMO-protein ligase 95.4 0.012 4.2E-07 60.0 5.0 63 72-134 215-281 (360)
162 1ho8_A Vacuolar ATP synthase s 95.2 2.7 9.2E-05 44.5 22.3 237 257-502 75-353 (480)
163 3ebb_A Phospholipase A2-activa 94.7 0.12 4.2E-06 51.8 9.9 147 348-497 151-304 (304)
164 2fv2_A RCD1 required for cell 94.4 1.1 3.8E-05 43.4 15.3 172 321-497 74-266 (268)
165 2fv2_A RCD1 required for cell 94.2 0.3 1E-05 47.4 10.9 230 216-455 3-266 (268)
166 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.016 5.5E-07 48.2 1.8 34 71-104 2-38 (101)
167 4ffb_C Protein STU2; tubulin f 93.1 0.38 1.3E-05 47.1 9.9 149 345-501 56-214 (278)
168 3ebb_A Phospholipase A2-activa 92.6 1 3.5E-05 45.0 12.3 190 217-410 104-301 (304)
169 3oc3_A Helicase MOT1, MOT1; re 92.1 0.28 9.5E-06 52.8 7.6 164 216-411 263-432 (800)
170 1upk_A MO25 protein; transfera 92.0 3.2 0.00011 41.8 14.9 241 255-500 74-333 (341)
171 2f31_A Diaphanous protein homo 90.7 3.8 0.00013 39.1 13.7 180 220-401 4-214 (233)
172 1wa5_C Importin alpha RE-expor 90.6 3.2 0.00011 48.0 15.5 254 232-501 376-672 (960)
173 1wa5_C Importin alpha RE-expor 89.7 17 0.00057 41.9 20.6 218 230-456 418-669 (960)
174 2of3_A ZYG-9; multifunctional 89.2 2.7 9.4E-05 41.1 11.3 179 220-415 50-236 (266)
175 3eg5_B Protein diaphanous homo 88.7 1.8 6.2E-05 44.7 10.3 100 399-498 133-245 (383)
176 3eg5_B Protein diaphanous homo 88.6 8.2 0.00028 39.7 15.2 182 219-402 69-281 (383)
177 2x19_B Importin-13; nuclear tr 88.3 17 0.00059 41.6 19.4 138 229-376 461-601 (963)
178 3nw0_A Non-structural maintena 87.3 0.5 1.7E-05 45.6 4.5 48 72-119 180-229 (238)
179 2x1g_F Cadmus; transport prote 87.2 6.6 0.00023 45.3 14.9 215 230-457 477-722 (971)
180 1upk_A MO25 protein; transfera 86.0 9.5 0.00032 38.4 13.1 195 217-417 79-285 (341)
181 2bnx_A Diaphanous protein homo 85.8 16 0.00056 37.5 15.5 182 220-403 8-220 (386)
182 3u0r_A Apoptosis inhibitor 5; 84.8 3.9 0.00013 43.2 10.1 118 358-494 41-158 (507)
183 1lrv_A LRV, leucine-rich repea 83.7 1.2 4.1E-05 43.1 5.4 44 431-493 197-240 (244)
184 2of3_A ZYG-9; multifunctional 82.9 16 0.00055 35.6 13.1 103 344-458 132-237 (266)
185 2f31_A Diaphanous protein homo 81.8 1.3 4.5E-05 42.4 4.8 61 400-460 68-128 (233)
186 3c2g_A SYS-1 protein; beta-cat 80.0 15 0.00052 37.2 11.7 109 286-397 265-379 (619)
187 2kkx_A Uncharacterized protein 77.8 3 0.0001 34.0 4.8 55 65-120 20-80 (102)
188 3u0r_A Apoptosis inhibitor 5; 77.6 5.6 0.00019 42.0 8.1 97 343-454 64-160 (507)
189 3ibv_A Exportin-T; karyopherin 77.5 89 0.003 36.1 19.3 223 216-459 6-262 (980)
190 2x1g_F Cadmus; transport prote 77.2 10 0.00035 43.6 11.3 211 275-500 476-723 (971)
191 2bnx_A Diaphanous protein homo 75.2 9.9 0.00034 39.2 9.4 61 400-460 72-132 (386)
192 1weo_A Cellulose synthase, cat 73.0 6.6 0.00023 31.4 5.5 46 73-118 17-69 (93)
193 4hat_C Exportin-1; heat repeat 71.5 97 0.0033 36.0 17.6 217 216-457 16-263 (1023)
194 3m1i_C Exportin-1; heat repeat 69.6 86 0.0029 36.3 16.8 219 216-458 16-264 (1049)
195 3mjh_B Early endosome antigen 68.3 1.2 4E-05 29.2 0.2 15 72-86 5-19 (34)
196 2jvx_A NF-kappa-B essential mo 66.5 1.6 5.5E-05 27.2 0.6 16 70-85 1-16 (28)
197 1x5b_A Signal transducing adap 65.6 13 0.00043 33.4 6.7 72 216-291 52-124 (163)
198 1juq_A ADP-ribosylation factor 62.3 16 0.00053 33.1 6.7 76 216-292 50-128 (171)
199 3gjx_A Exportin-1; transport, 62.1 88 0.003 36.6 14.6 215 216-458 28-276 (1073)
200 1mhq_A ADP-ribosylation factor 60.9 20 0.00068 31.6 6.9 76 216-292 38-116 (148)
201 2x19_B Importin-13; nuclear tr 60.2 2.3E+02 0.0077 32.1 24.0 221 216-459 24-270 (963)
202 1lsh_A Lipovitellin (LV-1N, LV 58.4 1.1E+02 0.0036 35.8 14.6 134 306-459 357-509 (1056)
203 3ldz_A STAM-1, signal transduc 56.5 26 0.00088 30.4 6.9 72 429-500 43-115 (140)
204 3ldz_A STAM-1, signal transduc 56.5 23 0.00077 30.8 6.5 71 216-291 42-113 (140)
205 4hat_C Exportin-1; heat repeat 55.2 18 0.00061 42.3 7.2 99 358-458 466-570 (1023)
206 1x5b_A Signal transducing adap 54.0 27 0.00093 31.2 6.7 72 429-500 53-126 (163)
207 3a6p_A Exportin-5; exportin-5, 53.0 1.9E+02 0.0063 34.2 15.7 221 217-459 12-278 (1204)
208 3zyq_A Hepatocyte growth facto 51.7 22 0.00077 33.5 6.1 72 216-291 45-117 (226)
209 1vdy_A Hypothetical protein (R 51.4 30 0.001 30.1 6.4 72 429-500 50-131 (140)
210 1mhq_A ADP-ribosylation factor 51.4 28 0.00096 30.6 6.3 73 428-500 38-117 (148)
211 3g2s_A C-terminal fragment of 50.4 40 0.0014 29.7 7.1 75 216-291 48-125 (149)
212 1dvp_A HRS, hepatocyte growth 50.1 22 0.00077 33.3 5.8 72 216-291 42-114 (220)
213 1juq_A ADP-ribosylation factor 49.9 23 0.00079 31.9 5.6 72 429-500 51-129 (171)
214 3pwf_A Rubrerythrin; non heme 49.0 12 0.00041 33.9 3.5 29 69-117 135-163 (170)
215 3c2g_A SYS-1 protein; beta-cat 48.2 1.1E+02 0.0036 31.2 10.3 110 369-480 266-377 (619)
216 6rxn_A Rubredoxin; electron tr 47.1 5.7 0.00019 27.8 0.8 14 67-80 25-38 (46)
217 1e8j_A Rubredoxin; iron-sulfur 46.5 7.2 0.00025 28.0 1.3 15 66-80 30-44 (52)
218 1lrv_A LRV, leucine-rich repea 46.2 13 0.00045 35.6 3.5 129 347-494 77-218 (244)
219 3g2s_A C-terminal fragment of 44.0 63 0.0022 28.3 7.4 72 429-500 49-127 (149)
220 2kn9_A Rubredoxin; metalloprot 41.1 9.3 0.00032 30.1 1.2 15 66-80 54-68 (81)
221 4rxn_A Rubredoxin; electron tr 41.0 8 0.00027 28.0 0.8 15 66-80 30-44 (54)
222 3gae_A Protein DOA1; UFD3, CDC 39.8 20 0.00068 34.5 3.7 128 233-374 70-217 (253)
223 1elk_A Target of MYB1; superhe 38.8 69 0.0024 28.2 6.9 75 216-291 53-129 (157)
224 2xqn_T Testin, TESS; metal-bin 38.2 19 0.00066 30.2 3.0 47 70-119 28-75 (126)
225 3l9t_A Putative uncharacterize 37.8 2.7E+02 0.0092 26.4 12.3 137 216-377 70-210 (240)
226 1yk4_A Rubredoxin, RD; electro 36.4 10 0.00036 27.2 0.8 14 67-80 30-43 (52)
227 3m1i_C Exportin-1; heat repeat 35.9 1.1E+02 0.0037 35.4 9.9 99 358-458 466-570 (1049)
228 2v3b_B Rubredoxin 2, rubredoxi 35.1 11 0.00037 27.4 0.7 15 66-80 30-44 (55)
229 3gae_A Protein DOA1; UFD3, CDC 34.3 83 0.0028 30.1 7.1 99 358-460 103-220 (253)
230 1m3v_A FLIN4, fusion of the LI 33.6 22 0.00074 29.9 2.5 52 70-122 30-84 (122)
231 3pst_A Protein DOA1; protein d 33.5 40 0.0014 35.0 4.9 128 233-375 242-390 (425)
232 3vld_A DNA mismatch repair pro 33.4 3.3E+02 0.011 28.7 11.8 104 345-455 117-223 (500)
233 1dx8_A Rubredoxin; electron tr 32.7 13 0.00043 28.5 0.8 14 67-80 35-48 (70)
234 1lsh_A Lipovitellin (LV-1N, LV 32.4 6.2E+02 0.021 29.3 15.5 130 221-377 445-579 (1056)
235 2jne_A Hypothetical protein YF 32.0 3.2 0.00011 33.8 -2.8 40 73-118 33-72 (101)
236 3l3f_X Protein DOA1, DOA1/UFD3 31.5 37 0.0013 34.5 4.2 127 233-374 179-326 (362)
237 3zyq_A Hepatocyte growth facto 31.4 57 0.0019 30.7 5.3 73 429-501 46-120 (226)
238 2xjy_A Rhombotin-2; oncoprotei 31.0 28 0.00097 29.3 2.9 49 70-119 27-78 (131)
239 1dvp_A HRS, hepatocyte growth 29.6 85 0.0029 29.2 6.2 72 429-500 43-116 (220)
240 1s24_A Rubredoxin 2; electron 29.2 16 0.00054 29.2 0.8 14 67-80 63-76 (87)
241 3qml_C Protein SLS1, nucleotid 28.2 1.7E+02 0.0058 28.9 8.1 133 277-415 42-189 (315)
242 2ko5_A Ring finger protein Z; 28.1 17 0.00057 29.4 0.8 46 73-120 29-74 (99)
243 3l3f_X Protein DOA1, DOA1/UFD3 28.0 4.2E+02 0.014 26.7 11.3 101 358-461 212-330 (362)
244 2o35_A Hypothetical protein DU 26.6 23 0.00079 28.8 1.3 12 94-105 43-54 (105)
245 3fyb_A Protein of unknown func 25.6 25 0.00085 28.6 1.3 12 94-105 42-53 (104)
246 3qml_C Protein SLS1, nucleotid 24.8 5.1E+02 0.017 25.5 11.2 149 345-499 23-189 (315)
247 2jtn_A LIM domain-binding prot 24.3 69 0.0024 28.7 4.4 48 70-120 85-132 (182)
248 1rut_X Flinc4, fusion protein 24.0 21 0.00071 32.5 0.7 49 70-119 30-81 (188)
249 3l9t_A Putative uncharacterize 23.7 4.5E+02 0.015 24.9 9.9 132 350-503 77-211 (240)
250 1elk_A Target of MYB1; superhe 23.7 1.3E+02 0.0046 26.3 6.0 72 429-500 54-131 (157)
251 2rgt_A Fusion of LIM/homeobox 23.2 81 0.0028 27.9 4.5 48 70-120 31-78 (169)
252 3vhs_A ATPase wrnip1; zinc fin 22.3 21 0.00071 21.4 0.2 12 72-83 6-17 (29)
253 1lko_A Rubrerythrin all-iron(I 22.0 23 0.0008 32.5 0.6 26 72-116 155-180 (191)
254 2jrp_A Putative cytoplasmic pr 21.7 7.2 0.00024 30.8 -2.5 40 73-118 3-42 (81)
255 1yuz_A Nigerythrin; rubrythrin 21.4 29 0.001 32.2 1.2 27 70-116 169-195 (202)
256 2lcq_A Putative toxin VAPC6; P 21.3 22 0.00074 31.7 0.3 10 108-117 149-158 (165)
257 1yc5_A NAD-dependent deacetyla 21.1 65 0.0022 30.6 3.6 49 89-138 126-180 (246)
258 1iml_A CRIP, cysteine rich int 20.7 86 0.003 23.4 3.6 46 70-118 25-72 (76)
259 3pst_A Protein DOA1; protein d 20.7 7E+02 0.024 25.6 13.2 128 358-492 275-423 (425)
260 1x61_A Thyroid receptor intera 20.6 1.1E+02 0.0037 22.4 4.2 36 70-105 31-67 (72)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.7e-31 Score=279.09 Aligned_cols=270 Identities=19% Similarity=0.178 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 008437 232 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLAA 304 (565)
Q Consensus 232 ~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~ 304 (565)
..++.|+++|.+++.+ +++|..|++.|+++.|+.+|.... +..++.+|+.|+++|.||+..++.+|..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999964 789999999999999999996321 11246799999999999997766688888654
Q ss_pred -CchHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHh-cCCCCHHHHHHHHHHHHHhcc-CCC
Q 008437 305 -GVIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPS 377 (565)
Q Consensus 305 -G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~-~~~ 377 (565)
|+||.|+.+|++++ .++.|+++|.||+.. +++|..|.+.|+||+||++| +++ +..+++.|+.+|+||+. +++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChh
Confidence 66999999999874 467899999999985 46899999999999999975 556 88999999999999998 668
Q ss_pred ChHHHH-HcCchHHHhhccCCCCh----HHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437 378 NIPNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 448 (565)
Q Consensus 378 nk~~iv-~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A 448 (565)
|+..++ ..|+|+.|++++.+++. .+++.|+++|.||+. +++++..+++. |+++.|+++|.+++..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCSCHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCCChHHHHHH
Confidence 899998 69999999998876543 589999999999996 88899888886 999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437 449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 504 (565)
Q Consensus 449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~ 504 (565)
+++|++|+..+.+.++.+.++|+||.|+.|+.++++++++.|..+|++|...++..
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999888888999999999999999999999999999999999999764443
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=279.59 Aligned_cols=267 Identities=19% Similarity=0.177 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cC
Q 008437 234 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLA-AG 305 (565)
Q Consensus 234 q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~-~G 305 (565)
+++|+++|.+++ .++++|..|.+.|++++|+.+|.... +..++.+|+.|+++|.||+.+++.++..+.. .|
T Consensus 165 ~~qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 458999999997 45889999999999999999995321 1124678999999999999766668877765 46
Q ss_pred chHHHHHHhcCCc--HHHHHHHHHHHhcCC--CCCchhhccCCchHHHHHHh-cCCCCHHHHHHHHHHHHHhcc-CCCCh
Q 008437 306 VIPLLEKMISNSN--SHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPSNI 379 (565)
Q Consensus 306 ~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~--~~~k~~I~~~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~-~~~nk 379 (565)
+||.|+.+|.+++ .++.|+++|.||+.. +++|..|.+.|+|++||++| +++ +..+++.|+.+|+||+. +++|+
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHH
Confidence 6999999999874 467899999999985 46889999999999999975 555 88999999999999998 77899
Q ss_pred HHHH-HcCchHHHhhccCCCCh----HHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 380 PNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 380 ~~iv-~~G~v~~Lv~Ll~~~~~----~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
..++ .+|+|+.|+.++..++. .+++.|+++|+||+. +++++..+++. |+++.|+.+|.+++..++++|++
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-G~i~~Lv~LL~~~~~~v~~~A~~ 401 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACG 401 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHSSCSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc-ccHHHHHHHHcCCChHHHHHHHH
Confidence 9998 79999999998766543 489999999999995 88889898886 99999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
+|++|+..+.+.++.+.++|+||.|+.|+.+++.++++.|..+|++|...++.
T Consensus 402 aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 402 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 99999988888899999999999999999999999999999999999866433
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.1e-29 Score=274.63 Aligned_cols=277 Identities=20% Similarity=0.171 Sum_probs=235.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.++..|.++ ++++|..|+..|++++..++.++..+++.|+||.|+.+|.+ +++.+|+.|+++|.||+..+++
T Consensus 3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHH
Confidence 367899999998 89999999999999998888889899999999999999987 6889999999999999976689
Q ss_pred hhHHHHhcCchHHHHHHhc-CCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc--------CC-------CC
Q 008437 297 NKELMLAAGVIPLLEKMIS-NSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK--------GK-------TE 358 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~-s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~--------~~-------~~ 358 (565)
+|..|+++|+||.|+.+|. +++ .++.|+++|.||+..+++|..|.+ |++|+|+++|. ++ .+
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 9999999999999999998 653 468899999999999999999998 99999999993 22 14
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHc-CchHHHhhccCC------CChHHHHHHHHHHHHHhcCc--------------
Q 008437 359 HQCKLDALHALYNLSTIPSNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAASA-------------- 417 (565)
Q Consensus 359 ~~~~~~Al~aL~nLs~~~~nk~~iv~~-G~v~~Lv~Ll~~------~~~~~~e~al~~L~nLa~~~-------------- 417 (565)
..+.++|+++|+|||.+++++..+++. |+++.|+.++.+ .+..+++.++.+|.||+...
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 566779999999999988899999998 999999997754 34567899999999997421
Q ss_pred -------------------------------------ccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCC
Q 008437 418 -------------------------------------AGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 418 -------------------------------------~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~ 459 (565)
.+...+.. .++++.|+.+|.. .++..+|.|+++|++||.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 11112222 3678899999976 47999999999999999865
Q ss_pred hHH-----HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 460 EKC-----CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 460 ~~~-----~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
... +..+.++|++|.|+.|+.++++++++.|.++|++|...
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 422 22344689999999999999999999999999999864
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=4.4e-29 Score=274.66 Aligned_cols=280 Identities=18% Similarity=0.148 Sum_probs=234.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc-C
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-N 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-~ 294 (565)
..++.||.+|.++ +.++|.+|+..|++++..++++|..+++.|+||.||.+|.+ .+..+|+.|+++|.||+.+ +
T Consensus 48 ~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 48 PELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----PKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSC
T ss_pred ccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC----CCHHHHHHHHHHHHHHHccCC
Confidence 3689999999988 89999999999999998899999999999999999999988 7899999999999999974 5
Q ss_pred chhhHHHHhcCchHHHHHHhcCC-c--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc-----------------
Q 008437 295 NRNKELMLAAGVIPLLEKMISNS-N--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----------------- 354 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~-~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~----------------- 354 (565)
++||..|+++|+|+.|+.+|.++ + .+++|+++|++||.++++|..|++ ++|++|+++|.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 88999999999999999999874 3 368899999999999999999985 67999999872
Q ss_pred CCCCHHHHHHHHHHHHHhccCCC-ChHHHHHc-CchHHHhhccCC------CChHHHHHHHHHHHHHhcCcccHH-----
Q 008437 355 GKTEHQCKLDALHALYNLSTIPS-NIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAASAAGKE----- 421 (565)
Q Consensus 355 ~~~~~~~~~~Al~aL~nLs~~~~-nk~~iv~~-G~v~~Lv~Ll~~------~~~~~~e~al~~L~nLa~~~~~r~----- 421 (565)
+..+..++++|+++|+||+.+.+ +|..+++. |+|+.|+.++.+ .+...++.|+++|+||+...+...
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 11257899999999999999775 58888885 667899997643 466789999999999997521110
Q ss_pred ---H--------Hhc---------CCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh----HHHHHHHhCCcHHHHH
Q 008437 422 ---E--------MNS---------TPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE----KCCQMVLQEGVIPALV 476 (565)
Q Consensus 422 ---~--------i~~---------~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~----~~~~~v~~~G~v~~Lv 476 (565)
. ... ++++|+.|+.+|.. .++.++|+|+++|++||.... ..+..+.++|++|.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 0 011 12446678889864 689999999999999998652 2344555679999999
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 477 SISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 477 ~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
.|+..+++.+++.|..+|++|....
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 9999999999999999999999653
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=7.6e-28 Score=258.94 Aligned_cols=281 Identities=15% Similarity=0.102 Sum_probs=238.5
Q ss_pred hHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHHhccCccchhhhhccCCH----------HHHHHHhcccccC
Q 008437 216 ERYQDFLNVLNEGE-----------NLGQKCNIVEQIRLLLKDDEEARVFTGANGFV----------VALLRFLESAVCE 274 (565)
Q Consensus 216 e~i~~ll~~L~s~~-----------~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i----------~~Lv~lL~s~~~s 274 (565)
.-++.||+.|.... +.+.|.+|+++|.+++...++.....++.|++ +.++++|.+....
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 34678899998631 37999999999999999888888888888888 7777888764211
Q ss_pred CC---HHHH-------HHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcC-------------CcHHHHHHHHHHHhc
Q 008437 275 RN---SYAQ-------EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN-------------SNSHGAATALYLNLS 331 (565)
Q Consensus 275 ~~---~~~q-------~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s-------------~~~~~~A~aaL~nLs 331 (565)
.+ ..++ -+|+++|.|++. ++++|..|++.|++++|+.+|.. ...+.+|+++|.||+
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 0033 389999999985 68999999999999999999952 123577999999999
Q ss_pred CCCC-Cchhhcc-CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC--CCChHHHHHcCchHHHhhc-cCCCChHHHHHH
Q 008437 332 FLDD-AKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSL-AVPGDPMWTEKS 406 (565)
Q Consensus 332 ~~~~-~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~--~~nk~~iv~~G~v~~Lv~L-l~~~~~~~~e~a 406 (565)
..++ +|..+.. .|+||.|+++|+++ ++++++.|+++|.||+.. +++|..++++|+|+.|+++ +..++..+++.+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 8765 7777754 56799999999998 999999999999999974 4689999999999999995 666788999999
Q ss_pred HHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCH----HHHHHHHHHHHHhhc---CChHHHHHHHhCCcHHHHHHh
Q 008437 407 LAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGEL----IEQEQAVSCLFLLCN---GNEKCCQMVLQEGVIPALVSI 478 (565)
Q Consensus 407 l~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~----~~~e~Av~~L~~Lc~---~~~~~~~~v~~~G~v~~Lv~L 478 (565)
+.+|+||+. +++++..|+...|+++.|+++|...++ .++++|+++|++|+. .+++.++.+.+.|++|.|+.+
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 999999999 878999998556999999999987654 489999999999997 677789999999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHH
Q 008437 479 SVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 479 ~~~~s~~~k~~A~~lL~~L~ 498 (565)
+.+++..+++.|..+|.+|.
T Consensus 388 L~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHH
Confidence 99999999999999999998
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=1.6e-27 Score=257.78 Aligned_cols=276 Identities=14% Similarity=0.138 Sum_probs=237.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhc-ccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
++++.|+.+|.++ +.++|..|+++|++|+..++++|..|++.|+||.|+++|. + .+..+++.|+++|.||+.+
T Consensus 44 g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~- 117 (457)
T 1xm9_A 44 GGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST- 117 (457)
T ss_dssp THHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC-
Confidence 5789999999987 9999999999999999887899999999999999999998 5 6889999999999999965
Q ss_pred chhhHHHHhcCchHHHHHHhc--------CCc--HH--------HHHHHHHHHhcCCCCCchhhccC-CchHHHHHHhcC
Q 008437 295 NRNKELMLAAGVIPLLEKMIS--------NSN--SH--------GAATALYLNLSFLDDAKPIIGSS-HAVPFLVELCKG 355 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~--------s~~--~~--------~~A~aaL~nLs~~~~~k~~I~~~-g~i~~Lv~lL~~ 355 (565)
+++|..+++ |++|.|+.+|. ++. .+ .+|+++|.||+..++++..+.+. |++++|+.+|++
T Consensus 118 ~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 118 DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 789999999 99999999993 221 12 37999999999888888899887 999999988863
Q ss_pred C-------------------------------------------------------------------------------
Q 008437 356 K------------------------------------------------------------------------------- 356 (565)
Q Consensus 356 ~------------------------------------------------------------------------------- 356 (565)
+
T Consensus 197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 1
Q ss_pred -------------------CCHHHHHHHHHHHHHhccCCCCh-----HHHH-HcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437 357 -------------------TEHQCKLDALHALYNLSTIPSNI-----PNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLL 411 (565)
Q Consensus 357 -------------------~~~~~~~~Al~aL~nLs~~~~nk-----~~iv-~~G~v~~Lv~Ll~~~~~~~~e~al~~L~ 411 (565)
.++..++.|+++|.||+...... ..++ ++|++|.|++|+.+++..+++.|+++|.
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 02456677899999999765432 2234 6899999999999999999999999999
Q ss_pred HHhcCcccHHHHhcCCCCHHHHHHHhhcCC------HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC-Ch
Q 008437 412 NLAASAAGKEEMNSTPGLVSGLATVLDTGE------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-ST 484 (565)
Q Consensus 412 nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~-s~ 484 (565)
||+.+.+.+..|.. ++++.|+++|..++ +++...++.+|.+|...+.+....+.+.|+++.|+.|+.++ ++
T Consensus 357 nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 99999988887765 79999999998764 36788999999999988888888888999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhh
Q 008437 485 RGRDKAQRLLMLFREQ 500 (565)
Q Consensus 485 ~~k~~A~~lL~~L~~~ 500 (565)
+++++|..+|..+-.+
T Consensus 435 ~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999877644
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=6.8e-27 Score=256.20 Aligned_cols=279 Identities=16% Similarity=0.199 Sum_probs=247.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.||+.|...+++++|.+|+++|.+++..+++++..+++.|+||.|+.+|.+ ++..+++.|+++|.||+.+++
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCH
Confidence 4688999999876578999999999999999999999999999999999999988 789999999999999997777
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH-------HHHHHHHHHHhcCCCCCchhhc-cCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIG-SSHAVPFLVELCKGKTEHQCKLDALH 367 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~A~aaL~nLs~~~~~k~~I~-~~g~i~~Lv~lL~~~~~~~~~~~Al~ 367 (565)
.++..+.+.|+++.|+.+|..++. ...++++|.+++........+. ..|++|.|+++|.++ +.+++..|++
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~ 254 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHH
Confidence 889999999999999999987531 3568999999988765544443 368999999999998 9999999999
Q ss_pred HHHHhccCCCCh-HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc-cHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437 368 ALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQ 445 (565)
Q Consensus 368 aL~nLs~~~~nk-~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~~~ 445 (565)
+|.+|+....++ ..+++.|+++.|+.++.+.+..++..++.+|.||+...+ .+..+++. |+++.|+.+|.+.++.++
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~-g~l~~L~~LL~~~~~~v~ 333 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQ 333 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGCC-CTTCSSHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhc-cchHHHHHHhcCCCHHHH
Confidence 999999877654 556689999999999999999999999999999987654 45566665 999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+.|+++|.+|+.++...+..+.+.|++|.|+.++.+++..+|+.|+.+|.+|...
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 9999999999999998899999999999999999999999999999999998754
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=1.5e-26 Score=254.59 Aligned_cols=279 Identities=16% Similarity=0.203 Sum_probs=248.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.||..|....++++|..|+++|.+++..+++.+..+++.|+||.|+.+|.+ .+..+++.|+++|.||+.+++
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCH
Confidence 5678999999876579999999999999999888899999999999999999988 789999999999999997778
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc-------HHHHHHHHHHHhcCCCCCchhh-ccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN-------SHGAATALYLNLSFLDDAKPII-GSSHAVPFLVELCKGKTEHQCKLDALH 367 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~-------~~~~A~aaL~nLs~~~~~k~~I-~~~g~i~~Lv~lL~~~~~~~~~~~Al~ 367 (565)
.++..+++.|+++.|+.+|..+. ....++++|.+++........+ ...|++|.|+++|.++ +++++.+|++
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~ 273 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHH
Confidence 89999999999999999998653 1356899999998876544444 3468999999999999 9999999999
Q ss_pred HHHHhccCCCC-hHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHH
Q 008437 368 ALYNLSTIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQ 445 (565)
Q Consensus 368 aL~nLs~~~~n-k~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~ 445 (565)
+|.+|+....+ ...+++.|+++.|+.++.+.+..++..++.+|.||+... +.+..++.. |+++.|+.+|.+.++.++
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~-g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGHHHHTTCSSHHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhc-ccHHHHHHHHcCCCHHHH
Confidence 99999987754 455678999999999999999999999999999998754 455566665 999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 446 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 446 e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+.|+++|.+|+.++......+.+.|++|.|+.++.+++..++..|+++|.+|...
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999998899999999999999999999999999999999998754
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=1.3e-26 Score=263.07 Aligned_cols=278 Identities=15% Similarity=0.170 Sum_probs=243.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-----------------------------ch---hhhhccCCHHH
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-----------------------------AR---VFTGANGFVVA 263 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-----------------------------~r---~~i~~~G~i~~ 263 (565)
..++.||.+|++. +..++..|++.|.+++...++ ++ ..+++.|++|.
T Consensus 421 g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 421 ASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred chHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 4678999999987 889999999999999975431 22 56788999999
Q ss_pred HHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhc
Q 008437 264 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG 341 (565)
Q Consensus 264 Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~ 341 (565)
|+.+|.+ +++.+|+.|+++|.||+. ++++|..+++.|++|+|+.+|.++.. ++.|+++|.+|+...+....+.
T Consensus 500 LV~LL~s----~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 500 LCALAKT----ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred HHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 9999998 689999999999999994 67899999999999999999998753 6789999999987644443332
Q ss_pred c---CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437 342 S---SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 342 ~---~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~ 417 (565)
. .|+||+|+.+|.++.+...+..|+++|.||+..+ +++..++++|+++.|+.++.+++..+++.|+.+|.||+.++
T Consensus 575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 1 4699999999987634455678999999999875 68999999999999999888888999999999999999999
Q ss_pred ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCcHHHHHHhhhcCChhHHHHHHHHHHH
Q 008437 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALVSISVNGSTRGRDKAQRLLML 496 (565)
Q Consensus 418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~~~~s~~~k~~A~~lL~~ 496 (565)
+.+..++...|+++.|+.++...+..+++.|+++|.+|+..+....+.+++ +|+++.|+.|+.+++.++++.|..+|.+
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999998864589999999999999999999999999999977667788888 8999999999999999999999999999
Q ss_pred HHh
Q 008437 497 FRE 499 (565)
Q Consensus 497 L~~ 499 (565)
|..
T Consensus 735 L~~ 737 (810)
T 3now_A 735 MIN 737 (810)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=3.3e-26 Score=250.76 Aligned_cols=279 Identities=19% Similarity=0.185 Sum_probs=244.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.++.+|+.|.+. +.+.|.+|+..+|.+... .......+++.|+||.||++|.+. .++.+|..|+++|.||+.+++
T Consensus 58 ~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCH
Confidence 367899999998 999999999999987643 333567889999999999999762 568999999999999998888
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHA 368 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~a 368 (565)
+++..+++.|+||.|+.+|.+++ .++.|+++|.||+.+ ++.+..+.+.|++++|+.+|.... .......++++
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 89999999999999999999875 467899999999987 567888888999999999998651 24578899999
Q ss_pred HHHhccCCCChHHHH-HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHH
Q 008437 369 LYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 447 (565)
Q Consensus 369 L~nLs~~~~nk~~iv-~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~ 447 (565)
|.|++.+......+. ..|+++.|+.++.+.+..++..++++|.+|+.....+..++...|+++.|+++|...+..++..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 999998776555444 4789999999999999999999999999999987777666555699999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 448 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 448 Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
|+.+|.+|+..+......+.+.|+++.|+.|+.+.++.+++.|.++|.+|..
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999998888999999999999999999999999999999999874
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=3.3e-26 Score=251.86 Aligned_cols=275 Identities=16% Similarity=0.125 Sum_probs=225.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.+++.||.+|.++ +.++|..|+.+|++|+.. ++++|..|++.|+|+.|+.+|.+. .+.++++.|+.+|+||+. +
T Consensus 90 G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~-~ 164 (584)
T 3l6x_A 90 KGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA---RDMDLTEVITGTLWNLSS-H 164 (584)
T ss_dssp THHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTT-S
T ss_pred CCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-C
Confidence 5789999999998 999999999999999985 688999999999999999999863 467889999999999986 6
Q ss_pred chhhHHHHhcCchHHHHHHhc-----------------C---CcHHHHHHHHHHHhcCCC-CCchhhcc-CCchHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMIS-----------------N---SNSHGAATALYLNLSFLD-DAKPIIGS-SHAVPFLVEL 352 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~-----------------s---~~~~~~A~aaL~nLs~~~-~~k~~I~~-~g~i~~Lv~l 352 (565)
+.+|..|++ |+++.|+.+|. . ....++|+++|.||+... +++..|.+ .|+++.||.+
T Consensus 165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 789999885 56999999872 0 123467899999998775 34766665 3555666666
Q ss_pred hcC-------------------------------------------------------------------------CCCH
Q 008437 353 CKG-------------------------------------------------------------------------KTEH 359 (565)
Q Consensus 353 L~~-------------------------------------------------------------------------~~~~ 359 (565)
|++ ..++
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~ 323 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence 542 1134
Q ss_pred HHHHHHHHHHHHhccCCC-----ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHH
Q 008437 360 QCKLDALHALYNLSTIPS-----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 434 (565)
Q Consensus 360 ~~~~~Al~aL~nLs~~~~-----nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv 434 (565)
.++++|++||.|||.... ++..+.+.|+++.|++|+..++..+++.|+++|.||+.+..++..| .. |+++.||
T Consensus 324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~-g~ip~LV 401 (584)
T 3l6x_A 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GK-HAIPNLV 401 (584)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-Hh-CCHHHHH
Confidence 455666666666665431 2233345789999999999999999999999999999999999877 44 8999999
Q ss_pred HHhhcC--------CHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC--ChhHHHHHHHHHHHHH
Q 008437 435 TVLDTG--------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFR 498 (565)
Q Consensus 435 ~lL~~~--------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~A~~lL~~L~ 498 (565)
++|..+ +..+...|+++|.+|+..+.+.++.+.++|+||.|+.|+.++ .+++++.|+.+|..|.
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 999875 467889999999999999988999999999999999999987 8999999999999985
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=7.9e-27 Score=243.69 Aligned_cols=241 Identities=17% Similarity=0.118 Sum_probs=210.4
Q ss_pred hHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHH
Q 008437 216 ERYQDFLNVLNEG----------ENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGA 284 (565)
Q Consensus 216 e~i~~ll~~L~s~----------~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~ 284 (565)
++++.|+..|... .+.+.|.+|++.|++|+..+++++..+.. .|+||.|+.+|.+ ++..+|+.|+
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~ 148 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIA 148 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC----CCHHHHHHHH
Confidence 5678888888521 13678999999999999888778888865 6679999999987 7899999999
Q ss_pred HHHHHhhcc-CchhhHHHHhcCchHHHHHHh-cCCc--HHHHHHHHHHHhcC-CCCCchhhc-cCCchHHHHHHhcCCCC
Q 008437 285 MALFNLAVN-NNRNKELMLAAGVIPLLEKMI-SNSN--SHGAATALYLNLSF-LDDAKPIIG-SSHAVPFLVELCKGKTE 358 (565)
Q Consensus 285 ~aL~nLa~~-~~~nk~~i~~~G~i~~Lv~lL-~s~~--~~~~A~aaL~nLs~-~~~~k~~I~-~~g~i~~Lv~lL~~~~~ 358 (565)
++|.||+.. ++++|..|++.|+||.|+.+| ++++ ..+.|+++|+||+. .+++|..|. ..|+|+.|+++|.++.+
T Consensus 149 ~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~ 228 (354)
T 3nmw_A 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 228 (354)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCC
Confidence 999999974 467999999999999999975 5443 46779999999998 567888888 68999999999987722
Q ss_pred H---HHHHHHHHHHHHhcc----CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCH
Q 008437 359 H---QCKLDALHALYNLST----IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLV 430 (565)
Q Consensus 359 ~---~~~~~Al~aL~nLs~----~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v 430 (565)
. ++++.|+++|+||+. +++++..++++|+++.|++++.+++..+++.|+++|.||+. +++.+..+++. |+|
T Consensus 229 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-G~i 307 (354)
T 3nmw_A 229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM-GAV 307 (354)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-THH
T ss_pred cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCH
Confidence 2 589999999999995 77899999999999999999999999999999999999995 68888899886 999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCChH
Q 008437 431 SGLATVLDTGELIEQEQAVSCLFLLCNGNEK 461 (565)
Q Consensus 431 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~ 461 (565)
+.|+++|.++++.+++.|+++|.+|+.+.+.
T Consensus 308 ~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999987764
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=7.8e-25 Score=240.80 Aligned_cols=280 Identities=19% Similarity=0.193 Sum_probs=246.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+.++.++..|.+. +.+.|..|+..+|.+.. +.......+++.|+||.|+.+|... .++.+|..|+++|.||+.++
T Consensus 76 ~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~ 151 (529)
T 3tpo_A 76 WSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGT 151 (529)
T ss_dssp CCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence 4578899999998 99999999999998764 3334567889999999999999753 56899999999999999877
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALH 367 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~ 367 (565)
++++..+++.|+||.|+.+|.+++. ++.|+++|.||+.+ ++++..+.+.|++++|+.+|.... .......+++
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 8888999999999999999998754 67899999999986 578889999999999999998651 3457889999
Q ss_pred HHHHhccCCCChHHH-HHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q 008437 368 ALYNLSTIPSNIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE 446 (565)
Q Consensus 368 aL~nLs~~~~nk~~i-v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e 446 (565)
+|.+++.+......+ ...|++|.|+.++.+++..++..++++|.+|+.....+..++...|+++.|+++|.+.++.++.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 999999877654444 4478999999999999999999999999999998777766655569999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 447 ~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
.|+.+|.+|+..++.....+.+.|+++.|+.|+.++++.+++.|.++|.+|..
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 99999999999998888999999999999999999999999999999999874
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=1.9e-25 Score=253.57 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=246.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.|+.+|.++ ++.+|.+|+++|.+++. ++++|..+++.|++++|+.+|.+ ++...|+.|+++|.||+.+.+
T Consensus 495 GaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 495 GITTALCALAKTE-SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp THHHHHHHHHTCC-CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCC
Confidence 4578899999987 99999999999999995 56799999999999999999987 678899999999999986533
Q ss_pred hhhHHH---HhcCchHHHHHHhcCC-cH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 296 RNKELM---LAAGVIPLLEKMISNS-NS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 296 ~nk~~i---~~~G~i~~Lv~lL~s~-~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
. ...+ ...|++|+|+.+|.++ .. ...|+.+|.||+.. ++++..|.+.|+++.|+.+|.++ ++.+++.|+++
T Consensus 569 p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~ 646 (810)
T 3now_A 569 P-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQC 646 (810)
T ss_dssp H-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHH
T ss_pred h-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence 2 2221 1246999999999865 32 34699999999987 57788898999999999999998 88999999999
Q ss_pred HHHhccCCCChHHHHH-cCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHH
Q 008437 369 LYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQE 446 (565)
Q Consensus 369 L~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e 446 (565)
|.||+.+++++..+++ .|+++.|+.|+.+.+..+++.|+++|+||+. ++.....+++..|+++.|+.+|.+++..+++
T Consensus 647 L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~ 726 (810)
T 3now_A 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726 (810)
T ss_dssp HHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHH
T ss_pred HHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHH
Confidence 9999999888888886 7999999999998999999999999999999 6778888888559999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC---ChhHHHHHHHHHHHHHhhcccCC
Q 008437 447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG---STRGRDKAQRLLMLFREQRQRDH 505 (565)
Q Consensus 447 ~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~---s~~~k~~A~~lL~~L~~~r~~~~ 505 (565)
.|+++|.||+..+.+....+.+.|+++.|+.|+... +.++.+.|..+|..+-++..-+.
T Consensus 727 ~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 727 RGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 999999999998888889999999999999987543 78999999999999988876554
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=7.5e-25 Score=214.97 Aligned_cols=242 Identities=21% Similarity=0.253 Sum_probs=219.1
Q ss_pred CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CC
Q 008437 259 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DD 335 (565)
Q Consensus 259 G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~ 335 (565)
|.|+.|+.+|.+ .+..++..|+++|.+++..+++++..+++.|+++.|+.+|.+++. +..|+.+|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999988 678999999999999997666799999999999999999998753 57799999999988 77
Q ss_pred CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc-cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 336 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS-TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 336 ~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs-~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
++..+.+.|+++.|+.+|+++ ++.++..|+++|.+|+ .+++++..+++.|+++.|++++.+++..++..++.+|.||+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888898999999999999988 8999999999999999 56678999999999999999999999999999999999999
Q ss_pred cCcccH-HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 415 ASAAGK-EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 415 ~~~~~r-~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
...+.. ..+.+ .|+++.|+.+|.+.++.+++.|+++|.+||..+++.++.+.+.|+++.|+.++.++++.+++.|..+
T Consensus 157 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 865544 66666 4999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHhhcccCCC
Q 008437 494 LMLFREQRQRDHP 506 (565)
Q Consensus 494 L~~L~~~r~~~~~ 506 (565)
|.+|........+
T Consensus 236 L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 236 LENIKSGGWLEHH 248 (252)
T ss_dssp HHHHHHTCBCCC-
T ss_pred HHHHHcCCCcccc
Confidence 9999977665544
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.7e-24 Score=237.22 Aligned_cols=279 Identities=16% Similarity=0.135 Sum_probs=247.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+.++.++..|.++ +++.|..|+..|+.++.... ..+..+.+.|+++.|+.+|.+. .++.+|..|+++|.+++..+
T Consensus 74 ~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp -CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence 5689999999987 89999999999999976654 6788889999999999999872 23899999999999999766
Q ss_pred chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
++++..+++.|+++.|+.+|.+++ .++.|+++|.+|+.. +.++..+...|++++|+.+|....+..++..|+++|.+
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 889999999999999999998864 367799999999876 45678888899999999999543389999999999999
Q ss_pred hccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH-HHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 372 LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 372 Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~-~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
|+....+....+..|+++.|+.++.+.+..++..++++|.+|+.....+. .++. .|+++.|+.+|...++.+++.|++
T Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 230 FCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp HHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHH
Confidence 99887666677779999999999988999999999999999999877664 4455 599999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC-ChhHHHHHHHHHHHHHh
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STRGRDKAQRLLMLFRE 499 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~-s~~~k~~A~~lL~~L~~ 499 (565)
+|.+|+..+....+.+++.|+++.|+.++.++ ++.++..|..+|.+|..
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999998888888899999999999999998 99999999999999984
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=3e-24 Score=235.34 Aligned_cols=279 Identities=18% Similarity=0.170 Sum_probs=247.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.|+..|.+..++.+|..|++.|.+++..+++++..+.+.|+++.|+.+|.+ .+..+++.|+++|.||+..++
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCCh
Confidence 4678899999987349999999999999998888999999999999999999987 688999999999999997667
Q ss_pred hhhHHHHhcCchHHHHHHhc-CCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMIS-NSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~-s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
.++..+.+.|+++.|+.+|. +.+ .+..|+++|.+|+............|+++.|+.+|.++ +..++..|+++|.+|
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYL 271 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 78999999999999999994 433 35779999999998755555555589999999999998 999999999999999
Q ss_pred ccCCCCh-HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcC-CHHHHHHHH
Q 008437 373 STIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAV 449 (565)
Q Consensus 373 s~~~~nk-~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~-s~~~~e~Av 449 (565)
+...+++ ..+++.|+++.|+.++.+.+..++..|+.+|.||+... .....++. .|+++.|+.+|.+. ++.++..|+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHH
Confidence 9876554 56778999999999998889999999999999999854 45556666 49999999999998 999999999
Q ss_pred HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
++|.+|+..+......+.+.|++|.|+.++.+++..+++.|..+|.+|...
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998887788889999999999999999999999999999998865
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=6.8e-25 Score=216.45 Aligned_cols=236 Identities=22% Similarity=0.255 Sum_probs=211.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
..+..++.+|.++ +.++|..|++.|++++..+++++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+..++
T Consensus 12 ~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 12 SELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCH
Confidence 3578999999998 89999999999988776677788899999999999999987 578999999999999997778
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCc-hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k-~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
+++..+++.|+++.|+.+|++++. ++.|+++|.+|+..++.+ ..+.+.|+++.|+++|.++ +..++..|+++|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 899999999999999999998753 677999999999998888 7888899999999999998 999999999999999
Q ss_pred ccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 373 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 373 s~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
+... +++..+++.|+++.|++++.+++..+++.|+.+|.||+. .++.+..+.+. |+++.|++++.++++.+++.|++
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHTTTTCSSSHHHHTHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CcHHHHHHHhCCCCHHHHHHHHH
Confidence 9754 577788899999999999988899999999999999996 45566677775 99999999999999999999999
Q ss_pred HHHHhhcC
Q 008437 451 CLFLLCNG 458 (565)
Q Consensus 451 ~L~~Lc~~ 458 (565)
+|.+|+.+
T Consensus 245 ~L~~l~~~ 252 (252)
T 4db8_A 245 ALEKLQSH 252 (252)
T ss_dssp HHHTTC--
T ss_pred HHHHHhcC
Confidence 99999863
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=2.2e-24 Score=211.63 Aligned_cols=238 Identities=21% Similarity=0.241 Sum_probs=214.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.|+..|.+. +.++|..|+..|.+++..+++++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+..++
T Consensus 2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCCh
Confidence 3678999999988 89999999999999998888899999999999999999988 679999999999999997668
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhc-CCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs-~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
+++..+.+.|+++.|+.+|.+++. +..|+++|.+|+ ..++++..+.+.|+++.|+++|+++ ++.++..|+++|.||
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 899999999999999999998753 577999999999 4567888888899999999999998 899999999999999
Q ss_pred ccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 373 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 373 s~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
+... .++..+++.|+++.|+.++.+++..++..|+.+|.+|+.. ++.+..+.+. |+++.|++++.+.++.+++.|++
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~ 234 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA-GGVEVLQKLLTSTDSEVQKEAQR 234 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHCCCcHHHHHHHHH
Confidence 9855 4567888999999999999888999999999999999984 4556666664 99999999999999999999999
Q ss_pred HHHHhhcCCh
Q 008437 451 CLFLLCNGNE 460 (565)
Q Consensus 451 ~L~~Lc~~~~ 460 (565)
+|.+|+....
T Consensus 235 ~L~~l~~~~~ 244 (252)
T 4hxt_A 235 ALENIKSGGW 244 (252)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCC
Confidence 9999997654
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=3.6e-24 Score=211.28 Aligned_cols=235 Identities=19% Similarity=0.221 Sum_probs=211.9
Q ss_pred cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcC-CC
Q 008437 258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSF-LD 334 (565)
Q Consensus 258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~-~~ 334 (565)
...++.++..|.+ .++++|..|+++|.++...+++++..+++.|+++.|+.+|.+++ .+..|+++|.+|+. .+
T Consensus 11 ~~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4568999999988 68889999999998765446778889999999999999999875 35679999999997 47
Q ss_pred CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCh-HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437 335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk-~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL 413 (565)
+++..+.+.|+++.|+++|+++ ++.+++.|+++|.||+.+.+++ ..+++.|+++.|++++.+++..+++.|+.+|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7888898999999999999998 8999999999999999999888 8899999999999999888999999999999999
Q ss_pred hcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437 414 AASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 492 (565)
Q Consensus 414 a~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~ 492 (565)
+... +.+..+++. |+++.|+++|.+.++.+++.|+++|.+|+..+++.+..+.+.|+++.|+.++.++++.+++.|..
T Consensus 166 ~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHHT-TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HcCChHHHHHHHHC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence 9855 455566664 99999999999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHHHH
Q 008437 493 LLMLFR 498 (565)
Q Consensus 493 lL~~L~ 498 (565)
+|.+|.
T Consensus 245 ~L~~l~ 250 (252)
T 4db8_A 245 ALEKLQ 250 (252)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998875
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=3.4e-23 Score=227.27 Aligned_cols=279 Identities=15% Similarity=0.135 Sum_probs=246.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.|+..|.+..++.+|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+ .+..+++.|+++|.+|+..++
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCc
Confidence 4578889999875478999999999999998888888999999999999999987 689999999999999997667
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
.++..+...|+++.|+.+|.+.+ .+..|+++|.+|+... .........++++.|+.+|.++ ++.++..|+++|.+|
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYL 284 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 78999999999999999998764 3577999999998765 4445555679999999999998 899999999999999
Q ss_pred ccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHH
Q 008437 373 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 450 (565)
Q Consensus 373 s~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~ 450 (565)
+... +....+++.|+++.|+.++.+.+..++..|+.+|.+|+... .....++.. |+++.|+.+|.+.++.+++.|++
T Consensus 285 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 285 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINA-GVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHH
T ss_pred hCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHc-chHHHHHHHHcCCCHHHHHHHHH
Confidence 9764 46777888999999999988889999999999999999754 444555664 99999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 451 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 451 ~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+|.+|+..+....+.+++.|+++.|+.++.++++.++..|..+|.+|...
T Consensus 364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999998887778888999999999999999999999999999998764
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=8.7e-23 Score=217.70 Aligned_cols=278 Identities=19% Similarity=0.162 Sum_probs=242.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.|+..|.+..++.+|..|++.|.+++..+++....+.+.|+++.|+.+|.+ .++.+++.|+++|.+++..++
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCH
Confidence 3578889999876578999999999999998777778888889999999999987 689999999999999997666
Q ss_pred hhhHHHHhcCchHHHHHHhcC-C--cHHHHHHHHHHHhcCCC--CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISN-S--NSHGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s-~--~~~~~A~aaL~nLs~~~--~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
.++..+++.|+++.|+.+|.+ . ..+..|+++|.+|+... ..+..+. .++++.|+++|.++ +..++..|+++|.
T Consensus 140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS-DTDVLADACWALS 217 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 788889999999999999985 3 34677999999998653 3333333 78999999999988 8999999999999
Q ss_pred HhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHH-HHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437 371 NLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLVSGLATVLDTGELIEQEQA 448 (565)
Q Consensus 371 nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~-~i~~~~g~v~~Lv~lL~~~s~~~~e~A 448 (565)
+|+... +++..+++.|+++.|+.++.+.+..++..|+.+|.+|+...+... .+++ .|+++.|+.+|.+.++.+++.|
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a 296 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEA 296 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHH
Confidence 999864 567778889999999998888899999999999999998765544 4555 4999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+++|.+|+..+....+.+.+.|+++.|+.++.++++.+|..|..+|.+|...
T Consensus 297 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999998877788888899999999999999999999999999998754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=5.2e-23 Score=225.81 Aligned_cols=278 Identities=16% Similarity=0.159 Sum_probs=246.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+.++.++..|.+. ++++|..|+..|+.++... ...+..+.+.|+++.|+.+|.+. .++.+|..|+++|.+++..+
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence 5688999999987 8999999999999997543 45667788899999999999872 27899999999999999766
Q ss_pred chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
++++..+++.|+++.|+.+|.+++ .++.|+++|.+|+.. ++++..+...|+++.|+.+|.+. +..++..|+++|.+
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 778888999999999999998764 467899999999876 46778888889999999999987 89999999999999
Q ss_pred hccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437 372 LSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449 (565)
Q Consensus 372 Ls~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av 449 (565)
|+... .+.......|+++.|+.++.+.+..++..++++|.+|+... +....++.. |+++.|+.+|...++.+++.|+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHGGGCSCHHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc-CcHHHHHHHHCCCChhhHHHHH
Confidence 99876 66667778999999999998889999999999999999864 456666765 9999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 450 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 450 ~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
.+|.+|+..+....+.+.+.|+++.|+.++.+++..++..|..+|.+|..
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999888778888999999999999999999999999999999874
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=235.63 Aligned_cols=275 Identities=21% Similarity=0.172 Sum_probs=242.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..++..|.++.+.++|..|+..|+.++.. ++++..+.+.|+++.|+.+|.+ .+..+|..|+.+|.||+..++
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcc
Confidence 46788999998765899999999999999865 4599999999999999999987 678999999999999997666
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcC-CCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~-~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
..+..+++.|+++.|+.+|++++.+.. ++.+|.+|+. .++++..+.+.|+++.|+++|++......+..++.+|+||
T Consensus 131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 788888899999999999998865444 5568999986 5788899999999999999999875677889999999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
+.+++++..+++.|+++.|+.++.+++..+++.++++|.||+...... ... .++++.|+++|...++.+++.|+++|
T Consensus 211 s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhh-hhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999988889999999999999999854322 111 27899999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCcHHHHHHhhhc-CC-hhHHHHHHHHHHHHH
Q 008437 453 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFR 498 (565)
Q Consensus 453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s-~~~k~~A~~lL~~L~ 498 (565)
.+|+..+.+.++.+.+.|+++.|+.++.. ++ +.+++.|..+|.+|.
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 99999988888999999999999998876 33 799999999999996
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=1.6e-23 Score=228.38 Aligned_cols=276 Identities=21% Similarity=0.173 Sum_probs=242.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.++..|.++.+++++..|+..|++++.. ++++..+++.|+++.|+.+|.+ .++.++..|+++|.+|+..++
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 133 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCc
Confidence 46788999997655899999999999999865 5599999999999999999987 678999999999999997667
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
..+..+.+.|+++.|+.+|.+++. +..++.+|.+|+.. ++++..+.+.|+++.|+++|+++.....+..++.+|.+|
T Consensus 134 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 788888899999999999998754 34567799999875 678888888999999999999875667788899999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
+.+++++..+++.|+++.|+.++.+++..+++.++++|.||+....... . ..++++.|+++|.+.++.+++.|+++|
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999888899999999999999998654322 1 137899999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCcHHHHHHhhhc--CChhHHHHHHHHHHHHHh
Q 008437 453 FLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~ 499 (565)
.+|+..+.+.+..+.+.|+++.|+.++.. ..+.+++.|..+|.+|..
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 99999888889999999999999998875 337999999999999863
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=209.70 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=171.4
Q ss_pred CHHHHHHHhcccccCCCH--HHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-C
Q 008437 260 FVVALLRFLESAVCERNS--YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFL-D 334 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~--~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~ 334 (565)
.++.|+++|.+ +++ .+|..|+.+|.+|+..++++|..|++.|+||.|+.+|++++ .++.|+++|.||+.. +
T Consensus 9 ~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 48999999988 455 88999999999999878889999999999999999999875 367799999999984 7
Q ss_pred CCchhhccCCchHHHHHHhc-CCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC----------------C
Q 008437 335 DAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV----------------P 397 (565)
Q Consensus 335 ~~k~~I~~~g~i~~Lv~lL~-~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~----------------~ 397 (565)
++|..|.+.|+||+|+++|+ ++ +.++++.|+.+|+||+..+++|..+++. +|++|++++. .
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence 89999999999999999998 46 8899999999999999999999999975 7999999542 1
Q ss_pred CChHHHHHHHHHHHHHhc-CcccHHHHhcCCCCHHHHHHHhhcC------CHHHHHHHHHHHHHhhcC
Q 008437 398 GDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 398 ~~~~~~e~al~~L~nLa~-~~~~r~~i~~~~g~v~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~ 458 (565)
.+..+++.|.++|+||+. ++++|..|.+.+|+|+.|+.+++.+ +.+.+|+|+.+|+|||.+
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 256899999999999998 5699999999888999999999852 668999999999999975
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=8.5e-22 Score=210.00 Aligned_cols=275 Identities=16% Similarity=0.159 Sum_probs=235.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc--cCccchhhhhcc-CCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLK--DDEEARVFTGAN-GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~--~~~~~r~~i~~~-G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
++.++..|.+. +.++|..|+..|+.++. .++.. ..+.+. |+++.|+.+|.+. .+..+|..|+++|.+++..+
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCC
Confidence 67889999887 99999999999999864 23333 345555 9999999999872 27899999999999999766
Q ss_pred chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
.++...+++.|+++.|+.+|.+++ .++.|+++|.+++... +.+..+...|+++.|+.+|.+..+..++..|+++|.+
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 677888889999999999999874 3677999999998774 5777788889999999999963389999999999999
Q ss_pred hccCC--CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHH
Q 008437 372 LSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQA 448 (565)
Q Consensus 372 Ls~~~--~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~A 448 (565)
|+... ..+..++ .|+++.|+.++.+++..++..++++|.+|+... +.+..+... |+++.|+.+|.+.++.+++.|
T Consensus 177 l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a 254 (450)
T 2jdq_A 177 LCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA-GVCRRLVELLMHNDYKVVSPA 254 (450)
T ss_dssp HHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT-TTHHHHHHHTTCSCHHHHHHH
T ss_pred HhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc-CcHHHHHHHHCCCchhHHHHH
Confidence 99754 3333344 899999999988889999999999999999864 455566664 999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 449 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 449 v~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
+++|.+|+...+...+.+.+.|+++.|+.++.+.++.+++.|..+|.++..
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999888777888899999999999999999999999999999874
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=3.1e-22 Score=218.16 Aligned_cols=275 Identities=17% Similarity=0.112 Sum_probs=241.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
++++.|+..|.+. ++++|..|+..|.+++..++..+..+.+.|+++.|+.+|.+ .+..++..++.+|.+|+..++
T Consensus 101 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 101 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCH
Confidence 5788999999987 89999999999999998877889999999999999999987 678899999999999998778
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
+++..+.+.|+++.|+.+|++++. ...++.+|.+|+..++++..+.+.|+++.|+.+|.++ ++..++.++++|.||
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 899999999999999999987632 3558889999999999999999999999999999998 899999999999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhc--CCHHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV 449 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~--~s~~~~e~Av 449 (565)
+....... ...|+++.|++++.+.+..+++.++++|.+|+... +++..+.+. |+++.|+++|.. .++.+++.|+
T Consensus 255 ~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 255 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHH
Confidence 97654322 23489999999888899999999999999999864 588888876 999999999976 3479999999
Q ss_pred HHHHHhhcCChH---HHHHHHhCCcHHHHHHhhhcCC-hhHHHHHHHHHHHHHh
Q 008437 450 SCLFLLCNGNEK---CCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFRE 499 (565)
Q Consensus 450 ~~L~~Lc~~~~~---~~~~v~~~G~v~~Lv~L~~~~s-~~~k~~A~~lL~~L~~ 499 (565)
.+|.+|+..++. .+..+.+.|+++.|+.++.+.. ..+++.|.++|.++..
T Consensus 332 ~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 999999986532 4678889999999999988876 5899999999999874
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=204.86 Aligned_cols=194 Identities=21% Similarity=0.196 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGENL--GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~--~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.++.+|.+|.++ +. ++|..|+..|++++..++++|..+.+.|+||.|+++|.+ ++..+|+.|+++|.||+..+
T Consensus 9 ~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCC
Confidence 578999999987 66 889999999999999899999999999999999999988 68999999999999999777
Q ss_pred chhhHHHHhcCchHHHHHHhcC-C--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhc---CC------------
Q 008437 295 NRNKELMLAAGVIPLLEKMISN-S--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GK------------ 356 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s-~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~---~~------------ 356 (565)
++||..|+++|+||.|+.+|.+ + +.+++|+++|+|||..+++|..|.+ ++|++|++++. +|
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 8999999999999999999974 4 3468899999999999999999986 57999999763 12
Q ss_pred CCHHHHHHHHHHHHHhccCC-CChHHHHHc-CchHHHhhccCC------CChHHHHHHHHHHHHHhcC
Q 008437 357 TEHQCKLDALHALYNLSTIP-SNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 357 ~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~-G~v~~Lv~Ll~~------~~~~~~e~al~~L~nLa~~ 416 (565)
.+..++.+|..+|+||+..+ ++|..|.+. |+|+.|+.+++. .+...+|.|+.+|+||+..
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 25689999999999999854 899999985 778999997753 2567899999999999864
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=8.4e-22 Score=226.38 Aligned_cols=275 Identities=21% Similarity=0.169 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..|+..|.++.+.++|..|+..|++|+.. ++++..+++.|+|+.|+.+|.+ .+..++..|+++|.||+...+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCh
Confidence 46788899998655899999999999999864 5678889999999999999987 678999999999999997767
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
..+..+++.|+++.|+.+|.+++. +..++.+|.+|+.. ++++..+.+.|+++.|+++|+++.....+..++.+|.+|
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 788888899999999999988654 45577889898864 678888888899999999999885566778899999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
+.+..++..+++.|+++.|+.++.+.+..+++.++++|.+|+...... .. ..++++.|+++|...++.+++.|+++|
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~-~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EG-MEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SC-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hh-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999865331 11 236899999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCcHHHHHHhhhc-CC-hhHHHHHHHHHHHHH
Q 008437 453 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFR 498 (565)
Q Consensus 453 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s-~~~k~~A~~lL~~L~ 498 (565)
.+|+..+.+.+..+.+.|+++.|+.++.. ++ +.+++.|..+|.+|.
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 99999988888999999999999998776 33 489999999999986
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=219.01 Aligned_cols=275 Identities=18% Similarity=0.116 Sum_probs=239.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
..++.|+..|.+. +..+|..|+..|.+++..++..+..+.+.|+++.|+.+|.+ .+..++..++.+|.+|+..++
T Consensus 98 g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 98 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCc
Confidence 4778999999987 89999999999999998877888889999999999999987 567888888899999997678
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
+++..+.+.|+++.|+.+|+++. ....++.+|.+|+..++++..+.+.|+++.|+.+|.++ +..++..++++|.||
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 89999999999999999998764 24668999999999999999999999999999999998 899999999999999
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhhc-CC-HHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT-GE-LIEQEQAV 449 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~~-~s-~~~~e~Av 449 (565)
+...... ....|+++.|+.++.+.+..+++.++++|.+|+... +++..+.+. |+++.|+++|.. ++ +.+++.|+
T Consensus 252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHH
Confidence 9754332 122489999999998889999999999999999864 677778875 999999999986 33 79999999
Q ss_pred HHHHHhhcCCh---HHHHHHHhCCcHHHHHHhhhcCC-hhHHHHHHHHHHHHHh
Q 008437 450 SCLFLLCNGNE---KCCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFRE 499 (565)
Q Consensus 450 ~~L~~Lc~~~~---~~~~~v~~~G~v~~Lv~L~~~~s-~~~k~~A~~lL~~L~~ 499 (565)
.+|.+|+.... ..+..+...|+++.|+.++.+.+ ..+++.|..+|.+|..
T Consensus 329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 99999997543 23455788999999999988875 6899999999999874
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=4.9e-21 Score=220.02 Aligned_cols=275 Identities=19% Similarity=0.173 Sum_probs=236.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.|+..|.+. +...+..|+..|.+++..... .....++++.|+.+|.+ .+..+++.|+++|.+|+..+++
T Consensus 361 ~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~----~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 361 GMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHH
T ss_pred hHHHHHHHHcCC-chHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHH
Confidence 457777888776 889999999999999865532 23346889999999987 6899999999999999977678
Q ss_pred hhHHHHhcCchHHHHHHhcC-C---cHHHHHHHHHHHhcCCCC----CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 297 NKELMLAAGVIPLLEKMISN-S---NSHGAATALYLNLSFLDD----AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s-~---~~~~~A~aaL~nLs~~~~----~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
++..+++.|+++.|+.+|.. + ..+..|+.+|.+|+.... .+..+...|+++.|+++|.++.+..+++.|+++
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 89999999999999999975 2 446779999999987532 245777789999999999988345899999999
Q ss_pred HHHhccCCCChHHHHHcCchHHHhhccCCCC----------------------hHHHHHHHHHHHHHhcCcccHHHHhcC
Q 008437 369 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGD----------------------PMWTEKSLAVLLNLAASAAGKEEMNST 426 (565)
Q Consensus 369 L~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~----------------------~~~~e~al~~L~nLa~~~~~r~~i~~~ 426 (565)
|.||+..++++..+++.|+++.|++++.+++ ..+++.++.+|.+|+....++..+...
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~ 592 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence 9999998889989999999999999764422 346788999999999999999888886
Q ss_pred CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 427 PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 427 ~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
|+++.|+.+|.+.++.++..|+.+|.+|+.. .+.+..+.+.|+++.|+.|+.+.++.+|+.|..+|..|...+
T Consensus 593 -~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 593 -NTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp -CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred -CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999865 557888899999999999999999999999999999988744
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.86 E-value=4.3e-22 Score=168.83 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=73.3
Q ss_pred CCCCCCCCcccccccccccCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437 64 GQMPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 142 (565)
Q Consensus 64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 142 (565)
.....+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||+|+++|...+|+||+.|+++|+.|+.+++..
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 4456789999999999999999999999 99999999999986 679999999999999999999999999999999864
Q ss_pred C
Q 008437 143 V 143 (565)
Q Consensus 143 ~ 143 (565)
.
T Consensus 93 ~ 93 (98)
T 1wgm_A 93 S 93 (98)
T ss_dssp S
T ss_pred h
Confidence 3
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.86 E-value=2.1e-22 Score=166.44 Aligned_cols=76 Identities=30% Similarity=0.392 Sum_probs=71.1
Q ss_pred CCCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437 64 GQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 140 (565)
Q Consensus 64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 140 (565)
.+...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++...+|+||..|+++|+.|+.+|+
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 456678999999999999999999999999999999999985 6899999999999999999999999999999875
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-20 Score=210.97 Aligned_cols=246 Identities=13% Similarity=0.153 Sum_probs=207.9
Q ss_pred chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCc-----HHHHHHH
Q 008437 251 ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN-----SHGAATA 325 (565)
Q Consensus 251 ~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~-----~~~~A~a 325 (565)
++..+.+.|+|+.|+.++++ .++.+|+.|+++|.||+. +.++|..+++.|++++|+.+|.++. .++.|+.
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ 523 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCR 523 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHH
Confidence 56788899999999999988 689999999999999995 6899999999999999999998863 3678999
Q ss_pred HHHHhcCCCCCchhhcc---CCchHHHHHHhcCCCCH-------------HHHHHHHHHHHHhccCCCC-----hHHHHH
Q 008437 326 LYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTEH-------------QCKLDALHALYNLSTIPSN-----IPNLLS 384 (565)
Q Consensus 326 aL~nLs~~~~~k~~I~~---~g~i~~Lv~lL~~~~~~-------------~~~~~Al~aL~nLs~~~~n-----k~~iv~ 384 (565)
+|.+|+...+....+.. .|+|++|+.||..+... ..+..|+.||.||++.++| +.++++
T Consensus 524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 99999876665555532 38999999999832111 2377899999999998743 788999
Q ss_pred c-CchHHHhhccCCCChHHHHHHHHHHHHHhcCcccH-HHHhcCC-----CCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 385 A-GIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK-EEMNSTP-----GLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 385 ~-G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r-~~i~~~~-----g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
+ |+++.|..++.+++..+++.|+.+|+||+.+++++ ..+.... +.+..|+.++..++...++.|+++|.+++.
T Consensus 604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 5 99999999887888999999999999999999876 3555432 137789999999999999999999999987
Q ss_pred CChHHHHHHHhC-CcHHHHHHhhhc--CChhHHHHHHHHHHHHHhhc
Q 008437 458 GNEKCCQMVLQE-GVIPALVSISVN--GSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 458 ~~~~~~~~v~~~-G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~~r 501 (565)
..+..++.+++. +++..|+.++.+ .++.++..+..+|.+|.++-
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 676667777776 899999999998 89999999999999999754
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=8e-21 Score=182.10 Aligned_cols=197 Identities=20% Similarity=0.228 Sum_probs=174.5
Q ss_pred hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC
Q 008437 256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL 333 (565)
Q Consensus 256 ~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~ 333 (565)
...|..+.|+.+|.+ .+..++..|+++|.+|+..+++++..+++.|+++.|+.+|.+++. +..|+++|.+|+..
T Consensus 9 ~~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 9 HHGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp ----CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 347889999999988 789999999999999997778889999999999999999998753 57799999999964
Q ss_pred -CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChHHHHHHHHHHH
Q 008437 334 -DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 411 (565)
Q Consensus 334 -~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~ 411 (565)
++++..+.+.|+++.|+.+|+++ ++.++..|+++|.||+... +++..+++.|+++.|++++.+++..+++.|+.+|.
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57788888899999999999999 8999999999999999654 56678889999999999998889999999999999
Q ss_pred HHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 412 NLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 412 nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
||+.. ++.+..+.+. |+++.|++++.+.++.+++.|+.+|.+|+.+
T Consensus 164 ~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 164 NIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHTSCHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99997 6777777775 9999999999999999999999999999863
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=5.8e-21 Score=183.06 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=175.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
..+.|+.+|.+. ++++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+ .++.+++.|+++|.||+..++.
T Consensus 13 ~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 13 ELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred hhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcH
Confidence 457788888887 99999999999999998888899999999999999999987 6889999999999999977788
Q ss_pred hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC-CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~-~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
++..+++.|+++.|+.+|++++. +..|+++|.+|+.. ++.+..+.+.|+++.|+++|+++ +..++..|+++|.||+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 57799999999975 44556777899999999999998 9999999999999999
Q ss_pred cC-CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 374 TI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 374 ~~-~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
.. ++++..+++.|+++.|++++.+++..+++.|+.+|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 87 5688889999999999999989999999999999999986
No 38
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.86 E-value=3e-22 Score=170.39 Aligned_cols=76 Identities=30% Similarity=0.396 Sum_probs=71.1
Q ss_pred CCCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 008437 64 GQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 140 (565)
Q Consensus 64 ~~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 140 (565)
.+...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++...+|+||..|+++|+.|+.+|+
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 345678999999999999999999999999999999999984 7899999999999999999999999999999875
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.84 E-value=2e-21 Score=181.32 Aligned_cols=78 Identities=33% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSV 143 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 143 (565)
...+|++|+||||+++|+|||+++|||||||.||++||..++.+||.|+++|...+|+||+.|+++|+.|+..||+..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 456799999999999999999999999999999999998755589999999999999999999999999999998753
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.80 E-value=4.1e-20 Score=150.12 Aligned_cols=76 Identities=63% Similarity=1.145 Sum_probs=71.9
Q ss_pred CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437 67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 142 (565)
Q Consensus 67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 142 (565)
..+|++|.||||+++|.|||+++|||+||+.||++|+..+..+||.|++++...+++||..|+++|+.|..+|+++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4578999999999999999999999999999999999877889999999999889999999999999999999874
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=2e-18 Score=175.76 Aligned_cols=236 Identities=16% Similarity=0.091 Sum_probs=185.4
Q ss_pred hHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHH-HhcccccCCCHHHHHHH
Q 008437 216 ERYQDFLNVLNEG-----------ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIG 283 (565)
Q Consensus 216 e~i~~ll~~L~s~-----------~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~s~~~~~q~~A 283 (565)
+.+...+..|.+. .+.+.+..|+..|..++. +.++...+.+.|+++.|+. +|.+ .++.+++.|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s----~~~~vr~~A 102 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEA----GAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTC----SSHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcC----CCHHHHHHH
Confidence 4566777777753 134678899999999995 4568888899999999999 9987 689999999
Q ss_pred HHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC-c--HHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcCCCCH
Q 008437 284 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-N--SHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEH 359 (565)
Q Consensus 284 ~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-~--~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~~~~~ 359 (565)
+++|.|++.+++.++..+++.|+++.|+.+|+++ + .++.|+++|.+|+.+. .....+...|+++.|+.+|+++ +.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~ 181 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQ 181 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CH
Confidence 9999999987788899999999999999999853 3 3677999999998753 4566777789999999999998 99
Q ss_pred HHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc-HHHHhcCCCCHHHHH---
Q 008437 360 QCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLA--- 434 (565)
Q Consensus 360 ~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~-r~~i~~~~g~v~~Lv--- 434 (565)
.+++.|+++|.+|+. +++.+..+++.|+++.|+.+|.+.+..+++.|+.+|.||+..... +.........+..++
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 999999999999986 456889999999999999999988999999999999999987332 222222101122222
Q ss_pred -HHhhc-C-CHHHHHHHHHHHHHhhc
Q 008437 435 -TVLDT-G-ELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 435 -~lL~~-~-s~~~~e~Av~~L~~Lc~ 457 (565)
+-|.. . ..++.+.|..+|.+...
T Consensus 262 ~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 262 CQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHccchHHHHHHHHHHHHHHHHHcC
Confidence 12221 1 34566777777666553
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.2e-18 Score=191.31 Aligned_cols=280 Identities=14% Similarity=0.112 Sum_probs=222.6
Q ss_pred chhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 213 NVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 213 ~~~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
.+.+....+.+.|... +.+.+..|++.|..++. +++.|..+++ .|+++.|+.+|.+. .+..+.-.++.+|.||+
T Consensus 331 si~~La~~~~~~L~~~-~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 331 NLKQLSEIFINAISRR-IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLS 405 (778)
T ss_dssp CHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhc
Confidence 3345556677778776 67779999999999984 6678888887 78899999999852 45567888889999987
Q ss_pred ccCch--------------------------------------hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhc
Q 008437 292 VNNNR--------------------------------------NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLS 331 (565)
Q Consensus 292 ~~~~~--------------------------------------nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs 331 (565)
...+. ++..+.++|+++.|+.++.+++ .++.|+++|.+|+
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 63221 5677889999999999998764 4678999999999
Q ss_pred CCCCCchhhccCCchHHHHHHhcCCCCHH---HHHHHHHHHHHhccCCCChHHHHH---cCchHHHhhccCC--CCh---
Q 008437 332 FLDDAKPIIGSSHAVPFLVELCKGKTEHQ---CKLDALHALYNLSTIPSNIPNLLS---AGIISGLQSLAVP--GDP--- 400 (565)
Q Consensus 332 ~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~---~~~~Al~aL~nLs~~~~nk~~iv~---~G~v~~Lv~Ll~~--~~~--- 400 (565)
.+.++|..+.+.|++++|+.+|.++ ... ++..|+.||.+|....+....+-. .|+|++|+.||.. +..
T Consensus 486 ~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 486 RSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp TSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccc
Confidence 9999999999999999999999988 433 899999999999865554433211 3999999998762 211
Q ss_pred ---------HHHHHHHHHHHHHhcCc-----ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437 401 ---------MWTEKSLAVLLNLAASA-----AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 466 (565)
Q Consensus 401 ---------~~~e~al~~L~nLa~~~-----~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 466 (565)
.-+..|+.+|.|||..+ +.|..|+.+.|+++.|..+|.+.+..+++.|+.++.||+.+.+...+.+
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~ 644 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF 644 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 12678999999999986 3478888754899999999999999999999999999998665321233
Q ss_pred HhC------CcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 467 LQE------GVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 467 ~~~------G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
... +.++.|+.|+..++..+|+.|.++|.++.
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 222 23778999999999999999999999995
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=1.8e-19 Score=181.63 Aligned_cols=78 Identities=33% Similarity=0.408 Sum_probs=72.8
Q ss_pred CCCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 008437 65 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 142 (565)
Q Consensus 65 ~~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 142 (565)
....+|++|+||||+++|+|||+++|||||||.||++|+..+..+||.|++++...+|+||..|+++|+.|+..|++.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 345689999999999999999999999999999999999987777999999999889999999999999999999874
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-19 Score=148.79 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=65.4
Q ss_pred CCCcccccccccccCCceecC-CCcccchHHHHHHHhcC-----CCCCCCCC--CC-CCCCCCcccHHHHHHHHHHHHHc
Q 008437 69 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDG-----HSTCPKTQ--QK-LPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~~-----~~~cP~t~--~~-l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+|+ +. +...+|+||..|+++|+.|+.++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999996 99999999999999863 46899944 44 88889999999999999999887
Q ss_pred CCC
Q 008437 140 GVS 142 (565)
Q Consensus 140 ~~~ 142 (565)
+-.
T Consensus 84 ~r~ 86 (94)
T 2yu4_A 84 HRH 86 (94)
T ss_dssp CSC
T ss_pred ccc
Confidence 743
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.74 E-value=1.5e-17 Score=169.11 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhcCCCCCchhhccCCchHHHHH-HhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCC
Q 008437 320 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVP 397 (565)
Q Consensus 320 ~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~-lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~ 397 (565)
+..|+..|.++....+++..+...|++++|+. +|.++ ++.++..|+++|.|++.+. .++..+++.|+++.|+.++.+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 45588888888887778888888999999999 99998 9999999999999999865 578889999999999998874
Q ss_pred -CChHHHHHHHHHHHHHhcC-cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHH
Q 008437 398 -GDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 475 (565)
Q Consensus 398 -~~~~~~e~al~~L~nLa~~-~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~L 475 (565)
.+..+++.|+++|.||+.+ +.....+... |+++.|+.+|.+++..++..|+++|.+|+..+.+.++.+.+.|+++.|
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 4788999999999999975 4556677775 899999999999999999999999999999888889999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 476 VSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 476 v~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+.|+...+..+++.|..+|..|...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.70 E-value=3.1e-18 Score=193.25 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=90.2
Q ss_pred CCCCCchhhHHHHHhhhccC-CCCC--CCCC------------------CCCCCCCCCcccccccccccCCceecCCC-c
Q 008437 35 GVHNGNEHAFDRQLSKLCSF-NFRP--NNRR------------------SGQMPLPPEELRCPISLQLMYDPVIIASG-Q 92 (565)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~------------------~~~~~~~p~~f~CpI~~~~m~dPV~~~~g-~ 92 (565)
.||+|+.+.|.++...++.. ..++ .-.+ +.+..++|++|+|||++++|+|||++++| +
T Consensus 833 DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~ 912 (968)
T 3m62_A 833 DERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKM 912 (968)
T ss_dssp CTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCE
Confidence 48999999999999887543 3432 1000 12357899999999999999999999997 7
Q ss_pred ccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 008437 93 TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 141 (565)
Q Consensus 93 ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 141 (565)
||||.+|++|+.. +.+||.|+++|++.+++||++||..|++||.+++-
T Consensus 913 TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 913 NIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp EEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred EECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 9999999999986 67999999999999999999999999999998864
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.64 E-value=3.3e-17 Score=126.02 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=50.3
Q ss_pred cccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 008437 72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 127 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~ 127 (565)
.|.||||+++|+|||++ +|||||||.+|++|+.+ +.+||+|+++|...+|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 89999999999999986 457999999999999999853
No 48
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=129.25 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=69.2
Q ss_pred CCCCCCcccccccccccCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKL-PHLCLTPNYCVKGLIASWCEMNGVS 142 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~t~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~ 142 (565)
...++++|.||||+++|.|||+++ |||+||+.||++|+.. +..+||.|++++ ....+.||..|+++|+.|...+++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 456789999999999999999999 9999999999999975 457899999997 5678999999999999999988763
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=127.72 Aligned_cols=69 Identities=13% Similarity=0.333 Sum_probs=63.4
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASWCE 137 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pn~~l~~~i~~~~~ 137 (565)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|+.+|+.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 467899999999999999999999999999999999766799999999987 789999999999998854
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.2e-15 Score=143.71 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=63.7
Q ss_pred CCCcccccccccccCCceec-CCCcccchHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPK--TQQKLPHLCLTPNYCVKGLIASWCEM 138 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~--t~~~l~~~~l~pn~~l~~~i~~~~~~ 138 (565)
...+|.||||+++|+|||++ .|||+|||.||++||.. +..+||+ |++.+...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 35789999999999999985 99999999999999986 4568999 98999999999999999999999774
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.47 E-value=1.3e-12 Score=142.72 Aligned_cols=274 Identities=16% Similarity=0.195 Sum_probs=210.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
|.+..|+.+|++..-.+.|+.|+..|+.+++ +++..++ .++++.|+..|... ..|.++-..++.+|.++...++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC-
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCC
Confidence 6899999999987678999999999999986 3566555 55699999999874 3688888889999988754332
Q ss_pred h-----------------hhHHH-HhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC--CCchhhcc-CCchHHHHHH
Q 008437 296 R-----------------NKELM-LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGS-SHAVPFLVEL 352 (565)
Q Consensus 296 ~-----------------nk~~i-~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~--~~k~~I~~-~g~i~~Lv~l 352 (565)
. +...+ .+.+.|+.|+.+|++.+. +..++.+|..|+... .++..|.. .++|+.||.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 2 11233 345789999999998754 566888888887553 36777774 6999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCChHHHHH-cCchHHHhhccCCC----ChHHHHHHHHHHHHHhcCc-ccHHHHhcC
Q 008437 353 CKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPG----DPMWTEKSLAVLLNLAASA-AGKEEMNST 426 (565)
Q Consensus 353 L~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~-~G~v~~Lv~Ll~~~----~~~~~e~al~~L~nLa~~~-~~r~~i~~~ 426 (565)
|.+. ...++..|+..|.+|+.+..+..+++. +|+++.|+.++... ...+.+.|+.+|.||.... .++..+.+.
T Consensus 175 L~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 175 LADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 9988 888999999999999998888777777 69999999977542 3478899999999999854 477788886
Q ss_pred CCCHHHHHHHhhcCCH------HHHHH---HHHHHHHhhcCC------hHHHHHHHhCCcHHHHHHhhhcC--ChhHHHH
Q 008437 427 PGLVSGLATVLDTGEL------IEQEQ---AVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVNG--STRGRDK 489 (565)
Q Consensus 427 ~g~v~~Lv~lL~~~s~------~~~e~---Av~~L~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~ 489 (565)
++++.|+.+|....+ ....+ ++.++..|+..+ ..++..+.+.|+++.|+.++... ...++..
T Consensus 254 -~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 254 -SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp -TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred -CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 999999999975322 12233 566667777653 24567888999999999877654 5666766
Q ss_pred HHHHHHHH
Q 008437 490 AQRLLMLF 497 (565)
Q Consensus 490 A~~lL~~L 497 (565)
|..++..+
T Consensus 333 Al~tla~~ 340 (651)
T 3grl_A 333 TINTVSEV 340 (651)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.47 E-value=2.4e-14 Score=130.77 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=63.7
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-CLTPNYCVKGLIASWCE 137 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~pn~~l~~~i~~~~~ 137 (565)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..|+.+|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997677899999999877 89999999999998863
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=116.89 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=64.2
Q ss_pred CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437 69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|..++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45679999999999999988 89999999999999985 578999999998888999999999999998765
No 54
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=2.3e-14 Score=116.12 Aligned_cols=67 Identities=25% Similarity=0.477 Sum_probs=58.6
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG------HSTCPKTQQKLPHLCLTPNYCVKGLI 132 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~------~~~cP~t~~~l~~~~l~pn~~l~~~i 132 (565)
...+.+++.||||++.|.|||+++|||+||+.||.+|+... ..+||.|++++...++.+|+.|+++|
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 34567899999999999999999999999999999999853 67899999999888899998776543
No 55
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.2e-13 Score=113.16 Aligned_cols=67 Identities=30% Similarity=0.617 Sum_probs=58.9
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 132 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pn~~l~~~i 132 (565)
...+.++|.||||++.|.|||+++|||+||+.||.+|+.. +...||.|++++...++.||..|+++|
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 4456789999999999999999999999999999999986 367899999999988999998766543
No 56
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=8.1e-13 Score=105.76 Aligned_cols=62 Identities=32% Similarity=0.512 Sum_probs=52.3
Q ss_pred CCCCCCCCcccccccccccCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCCC-CCCCccc
Q 008437 64 GQMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKLP-HLCLTPN 125 (565)
Q Consensus 64 ~~~~~~p~~f~CpI~~~~m~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~-~~~l~pn 125 (565)
.....+++++.||||+++|.|||+++ |||+||+.||++|+.. +..+||.|++++. ...+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 34566789999999999999999999 9999999999999985 3478999999854 4456666
No 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.36 E-value=3.1e-13 Score=116.47 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=61.2
Q ss_pred CCCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 008437 68 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIASWC 136 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~~~ 136 (565)
.+++++.||||+++|.|||++ +|||+||+.||.+|+.. ..+||.|++++... .+.+|..+.++|+.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356789999999999999998 99999999999999986 48899999998765 7899999999998874
No 58
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=110.38 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=56.4
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIA 133 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~ 133 (565)
.....+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 3445678999999999999999999999999999999975 678999999986 67889966655543
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-13 Score=112.16 Aligned_cols=67 Identities=25% Similarity=0.557 Sum_probs=58.8
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 132 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pn~~l~~~i 132 (565)
...+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++...++.||+.|+++|
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 4456789999999999999999999999999999999975 467899999999988899998766543
No 60
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=114.44 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=63.9
Q ss_pred CCCcccccccccccCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437 69 PPEELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++...++++|..+..+++......
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4568999999999999999 9999999999999999976579999999999899999999999888776544
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.34 E-value=4.4e-13 Score=117.42 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=62.9
Q ss_pred CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437 67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 135 (565)
Q Consensus 67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 135 (565)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++.||..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356789999999999999999999999999999999987666999999999988899999999998764
No 62
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=4e-13 Score=117.48 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=62.6
Q ss_pred CCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 008437 69 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 139 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 139 (565)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|++++...++.+|..|+++|+.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 35689999999999999999 9999999999999997 67999999998889999999999999997754
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=101.53 Aligned_cols=57 Identities=14% Similarity=0.341 Sum_probs=50.3
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 122 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 122 (565)
...+++++.||||++.|.|||+++|||+||+.||++|+..+..+||.|++++...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 344578999999999999999999999999999999997667899999999876554
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.33 E-value=3.1e-13 Score=117.78 Aligned_cols=69 Identities=16% Similarity=0.335 Sum_probs=61.8
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-------LCLTPNYCVKGLIASWCE 137 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~-------~~l~pn~~l~~~i~~~~~ 137 (565)
..++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|..+|+.|..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 347899999999999999999999999999999998778899999999863 567889999999998853
No 65
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=102.67 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=54.0
Q ss_pred CCCCCCCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 64 GQMPLPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 64 ~~~~~~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
.....+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3455677899999999999999997 99999999999999986 6789999999988777766
No 66
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=5.8e-13 Score=123.69 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=62.5
Q ss_pred CCCCcccccccccccCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHHHH
Q 008437 68 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLP-HLCLTPNYCVKGLIASWCE 137 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~-~~~l~pn~~l~~~i~~~~~ 137 (565)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.||..|.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456789999999999999987 999999999999999987889999999985 4569999999999998844
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.31 E-value=1.8e-10 Score=125.98 Aligned_cols=278 Identities=16% Similarity=0.131 Sum_probs=208.4
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCcc-----------------chhh-hhccCCHHHHHHHhcccccCCC
Q 008437 216 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEE-----------------ARVF-TGANGFVVALLRFLESAVCERN 276 (565)
Q Consensus 216 e~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~-----------------~r~~-i~~~G~i~~Lv~lL~s~~~s~~ 276 (565)
.+++.|+..|+.. .|.+.-..+++.|..+...+++ +... +.+.+.|+.|+.+|.+ .+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~d 135 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FD 135 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CC
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----cc
Confidence 5688899999764 4778888889999887654432 1122 3457899999999987 78
Q ss_pred HHHHHHHHHHHHHhhccCch-hhHHHHhc-CchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC-CchhhccCCchHHHHH
Q 008437 277 SYAQEIGAMALFNLAVNNNR-NKELMLAA-GVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGSSHAVPFLVE 351 (565)
Q Consensus 277 ~~~q~~A~~aL~nLa~~~~~-nk~~i~~~-G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~-~k~~I~~~g~i~~Lv~ 351 (565)
..++..+++.|..|+...+. +.+.|..+ ++|+.|+.+|+.... +-.|+.+|.+|+.+.. .+..+.-.|+++.|+.
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 99999999999999876655 67888855 999999999997643 4558888999988754 4555555799999999
Q ss_pred HhcCCC---CHHHHHHHHHHHHHhccCC-CChHHHHHcCchHHHhhccCCCChH------HHH---HHHHHHHHHhcCc-
Q 008437 352 LCKGKT---EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPM------WTE---KSLAVLLNLAASA- 417 (565)
Q Consensus 352 lL~~~~---~~~~~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~Ll~~~~~~------~~e---~al~~L~nLa~~~- 417 (565)
+++.+. ...+..+++.+|.||..+. .|+..+.+.|+++.|..++..++.. ... .++.++..|+...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998641 2368899999999999765 5999999999999999987543211 122 3777788887742
Q ss_pred ------ccHHHHhcCCCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhcCChHHHHHHHhCC-----cHHHHHH----hhh
Q 008437 418 ------AGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-----VIPALVS----ISV 480 (565)
Q Consensus 418 ------~~r~~i~~~~g~v~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-----~v~~Lv~----L~~ 480 (565)
.++.++.++ |++..|++++... ...++..|+.++..+.+++......+.+.- ..|.++. +..
T Consensus 296 ~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 296 PPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp CHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 356677886 9999999998764 678999999999999999987777766542 2334433 333
Q ss_pred c-CChhHHHHHHHHHHHHH
Q 008437 481 N-GSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 481 ~-~s~~~k~~A~~lL~~L~ 498 (565)
+ .....|-.|...++.+-
T Consensus 375 ~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 375 ERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 3 35677777777777754
No 68
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.5e-12 Score=112.61 Aligned_cols=68 Identities=24% Similarity=0.488 Sum_probs=60.1
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHLCLTPNYCVKGLIASWCE 137 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~ 137 (565)
.+++.||||++.|.|||+++|||+||+.||.+|+... ..+||.|++++...++.+|..+..+++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999853 3689999999999899999887777777754
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=3.6e-12 Score=114.73 Aligned_cols=64 Identities=19% Similarity=0.486 Sum_probs=53.1
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWC 136 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~ 136 (565)
.++|.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 467899999999999999999999999999999985 67899999988643 34566666666554
No 70
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=98.58 Aligned_cols=57 Identities=26% Similarity=0.528 Sum_probs=49.8
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCL 122 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l 122 (565)
...+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++...++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3456789999999999999999999999999999999973 56789999999876554
No 71
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.20 E-value=6.7e-12 Score=117.01 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=62.8
Q ss_pred CCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 008437 67 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 135 (565)
Q Consensus 67 ~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 135 (565)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++.||..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 356789999999999999999999999999999999987667999999999988899999999988753
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=9.4e-12 Score=96.79 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=50.1
Q ss_pred Cccccccccc-ccCCc----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 71 EELRCPISLQ-LMYDP----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 71 ~~f~CpI~~~-~m~dP----V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
+++.||||++ .+.+| |+++|||+||+.||++|+..+...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777889999999988888776
No 73
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.19 E-value=8.7e-12 Score=108.70 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=56.7
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLIAS 134 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pn~~l~~~i~~ 134 (565)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++...++. ++..+.++|..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999997678899999999877765 55666666643
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.19 E-value=2.2e-12 Score=116.47 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=56.7
Q ss_pred CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC---------CCCCcccHHHHHHHH
Q 008437 68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP---------HLCLTPNYCVKGLIA 133 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~---------~~~l~pn~~l~~~i~ 133 (565)
.+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++. ...+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 356899999999999999999999999999999999877779999988643 234668888888885
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=93.59 Aligned_cols=48 Identities=31% Similarity=0.602 Sum_probs=42.8
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT 113 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t 113 (565)
...+.+++.||||++.|.|||+++|||+||+.||++|+.. +..+||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999999999999999999999999985 46789987
No 76
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.9e-11 Score=89.41 Aligned_cols=48 Identities=29% Similarity=0.714 Sum_probs=42.7
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT 113 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~t 113 (565)
...+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4456688999999999999999999999999999999865 56889987
No 77
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.09 E-value=5e-09 Score=99.88 Aligned_cols=188 Identities=17% Similarity=0.135 Sum_probs=152.5
Q ss_pred ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC
Q 008437 257 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 334 (565)
Q Consensus 257 ~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~ 334 (565)
..+.++.|+.+|.+ .+..++..|+.+|..+. . .++++.|+.+|.+++. +..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQIG--- 78 (211)
T ss_dssp CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---
T ss_pred CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC--C---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 46789999999987 78999999999998764 1 3578999999988754 455777776553
Q ss_pred CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHh
Q 008437 335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 414 (565)
Q Consensus 335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa 414 (565)
..++++.|+++|.+. ++.++..|+.+|..+.. .++++.|+.++.+.+..++..++.+|..+.
T Consensus 79 -------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 79 -------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp -------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 356889999999988 99999999999998853 358899999888899999999999999884
Q ss_pred cCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437 415 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494 (565)
Q Consensus 415 ~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL 494 (565)
. +..++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|
T Consensus 141 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 141 D-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 3578999999998999999999999998843 24577888888899999999999999
Q ss_pred HHHHhhcc
Q 008437 495 MLFREQRQ 502 (565)
Q Consensus 495 ~~L~~~r~ 502 (565)
..+.....
T Consensus 199 ~~~~~~~~ 206 (211)
T 3ltm_A 199 ETHKSFNH 206 (211)
T ss_dssp HC------
T ss_pred HhcCCCCC
Confidence 98875533
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.09 E-value=3.5e-11 Score=95.08 Aligned_cols=57 Identities=26% Similarity=0.583 Sum_probs=51.0
Q ss_pred CCCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 008437 69 PPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~ 126 (565)
..+++.||||++.|.+| ++++|||+|++.||.+|+.. ..+||.|++++...++.|++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 34789999999999999 89999999999999999986 57899999999988887763
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.4e-11 Score=94.16 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=45.8
Q ss_pred CCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 68 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||+|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 34578999999999999999999999999999999986 5789999998764
No 80
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=95.07 Aligned_cols=56 Identities=27% Similarity=0.511 Sum_probs=48.7
Q ss_pred CCCCCCCcccccccccccCC----ceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCC
Q 008437 65 QMPLPPEELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHL 120 (565)
Q Consensus 65 ~~~~~p~~f~CpI~~~~m~d----PV~~~~g~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~ 120 (565)
....+.+++.||||++.|.| |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34456788999999999999 9999999999999999999864 57899999987653
No 81
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.07 E-value=7.6e-09 Score=98.62 Aligned_cols=186 Identities=15% Similarity=0.163 Sum_probs=150.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..|+..|.+. ++.+|..|+..|..+.. .++++.|+.+|.+ .+..++..|+.+|..+. +
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~--~- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D- 79 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C-
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence 4578899999987 99999999999987642 4679999999987 68999999999998874 1
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.++++.|+.+|.+++. +..|+.+|..+. ..++++.|+.+|.++ ++.++..|+.+|..+.
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG 140 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC
Confidence 3568999999987754 455777776653 346889999999988 9999999999999984
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
. ..+++.|+.++.+.++.++..++.+|..+.. +.+++.|..++.+.++.++..|+.+|.
T Consensus 141 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 3578999998888899999999999999843 356788999999999999999999999
Q ss_pred HhhcCCh
Q 008437 454 LLCNGNE 460 (565)
Q Consensus 454 ~Lc~~~~ 460 (565)
.+.....
T Consensus 200 ~~~~~~~ 206 (211)
T 3ltm_A 200 THKSFNH 206 (211)
T ss_dssp C------
T ss_pred hcCCCCC
Confidence 8876554
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.07 E-value=5.8e-09 Score=103.96 Aligned_cols=222 Identities=12% Similarity=0.070 Sum_probs=160.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..|+..|.+. ++.+|..|+..|..+. ..++++.|+.+|.+ .+..++..|+.+|..+.. ...
T Consensus 24 ~i~~L~~~L~~~-~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~-~~~ 86 (280)
T 1oyz_A 24 NDDELFRLLDDH-NSLKRISSARVLQLRG-----------GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI-CKK 86 (280)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC-CTT
T ss_pred hHHHHHHHHHcC-CHHHHHHHHHHHHccC-----------CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc-ccc
Confidence 467889999887 8999999999998875 23468899999987 688999999999998853 221
Q ss_pred hhHHHHhcCchHHHHH-HhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 297 NKELMLAAGVIPLLEK-MISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~-lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
... ..++.|.. ++..++ .+..|+.+|..+..... .....+++.|+.+|.++ ++.++..|+.+|.++.
T Consensus 87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-STNVRRATAFAISVIN 156 (280)
T ss_dssp THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC-
T ss_pred cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcC
Confidence 111 13344443 344443 35667888877642210 11235789999999988 8999999999998875
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
. .++++.|+.++.+.+..++..++.+|..+.... +..++.|+.+|.+.++.++..|+.+|.
T Consensus 157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3 358899999888888999999999998874321 246788889998889999999999998
Q ss_pred HhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 454 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
.+. ...+++.|+.++.+.+ ++..|...|..+
T Consensus 218 ~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 218 YRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp HTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred HhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 876 2356777777766543 666666666655
No 83
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.05 E-value=1.4e-08 Score=95.89 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=150.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.....++..|.+. ++.+|..|+..|..+.. .++++.|+.+|.+ .+..++..|+.+|..+. +
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~--~- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D- 74 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C-
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence 4668899999998 99999999999987652 3578999999976 68899999999998874 2
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
.++++.|+.+|.+++. +..|+.+|..+. ...+++.|+.+|.+. ++.++..|+.+|..+.
T Consensus 75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 2568999999987754 456777776653 346899999999988 9999999999999885
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
. .++++.|+.++.+.+..++..|+.+|..+.. +.+++.|..++.+.++.+++.|+.+|.
T Consensus 136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 4688999998888899999999999999832 256788999999999999999999998
Q ss_pred Hhh
Q 008437 454 LLC 456 (565)
Q Consensus 454 ~Lc 456 (565)
.|-
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 764
No 84
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.5e-10 Score=89.47 Aligned_cols=53 Identities=25% Similarity=0.527 Sum_probs=46.8
Q ss_pred CCCCCCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
....++++.||||++.|.+| |+++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34456889999999999999 89999999999999999986 6789999988753
No 85
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.00 E-value=8.4e-11 Score=90.72 Aligned_cols=54 Identities=24% Similarity=0.512 Sum_probs=48.9
Q ss_pred CcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 71 EELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 71 ~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468899999999998 88999999999999999986 6789999999988887765
No 86
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.99 E-value=1.5e-08 Score=95.78 Aligned_cols=185 Identities=18% Similarity=0.148 Sum_probs=152.3
Q ss_pred hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC
Q 008437 256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL 333 (565)
Q Consensus 256 ~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~ 333 (565)
...+..+.++.+|.+ .++.++..|+.+|..+. + .+.++.|+.+|.+++. +..|+.+|..+
T Consensus 11 ~~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~--- 72 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQI--- 72 (201)
T ss_dssp CCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---
T ss_pred cCCcchHHHHHHhcC----CCHHHHHHHHHHHHhcC--C---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh---
Confidence 345678899999988 78999999999998874 1 2568999999987754 45567677554
Q ss_pred CCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437 334 DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 334 ~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL 413 (565)
+...+++.|+.+|.+. ++.++..|+.+|..+.. ..+++.|+.++.+.++.++..|+.+|..+
T Consensus 73 -------~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 73 -------GDERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp -------CCGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2346899999999988 99999999999998753 35889999988888999999999999988
Q ss_pred hcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 414 AASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 414 a~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
.. +..++.|+.++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...
T Consensus 135 ~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 135 GD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp TC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 53 3688999999999999999999999998832 2357788888899999999999999
Q ss_pred HHHHH
Q 008437 494 LMLFR 498 (565)
Q Consensus 494 L~~L~ 498 (565)
|..+.
T Consensus 193 L~~l~ 197 (201)
T 3ltj_A 193 LETHK 197 (201)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.99 E-value=4.4e-10 Score=90.47 Aligned_cols=58 Identities=21% Similarity=0.425 Sum_probs=49.2
Q ss_pred CCCCCcccccccccccCCce---ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 67 PLPPEELRCPISLQLMYDPV---IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 67 ~~~p~~f~CpI~~~~m~dPV---~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
....+++.||||++.|.+|. +++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 34457899999999999874 5699999999999999975 5799999999988777665
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=7.2e-10 Score=89.33 Aligned_cols=55 Identities=18% Similarity=0.427 Sum_probs=46.9
Q ss_pred CCCCccccccccccc--CCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437 68 LPPEELRCPISLQLM--YDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 122 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m--~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 122 (565)
...+++.||||++.| .||++.+ |||+||+.||.+|+..+...||.|++++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456789999999998 5777776 999999999999998777899999999876543
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.81 E-value=1.7e-07 Score=93.25 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=148.6
Q ss_pred hccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCC
Q 008437 256 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL 333 (565)
Q Consensus 256 ~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~ 333 (565)
...+.++.|+..|.+ .+..++..|+.+|.++. + .++++.|+.+|.+++. +..|+.+|..+...
T Consensus 20 ~~~~~i~~L~~~L~~----~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 20 CKKLNDDELFRLLDD----HNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp HHTSCHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred HHHhhHHHHHHHHHc----CCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 346789999999987 68899999999999875 1 2468899999988754 45677788776532
Q ss_pred CCCchhhccCCchHHHHH-HhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHH
Q 008437 334 DDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLN 412 (565)
Q Consensus 334 ~~~k~~I~~~g~i~~Lv~-lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~n 412 (565)
... + ...++.|.+ ++.+. ++.++..|+.+|.++...... ....+++.|+.++.+.++.++..++.+|.+
T Consensus 85 ~~~---~--~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 85 KKC---E--DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp TTT---H--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred ccc---c--hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 211 0 012333432 34556 899999999999998742211 123467888888888999999999999987
Q ss_pred HhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHH
Q 008437 413 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 492 (565)
Q Consensus 413 La~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~ 492 (565)
+.. +..++.|+.++.+.++.++..|+.+|..+...++ .+++.|+.++.+.++.+|..|..
T Consensus 155 ~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 155 IND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp C--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 743 3689999999999999999999999998864433 35678888888999999999999
Q ss_pred HHHHHH
Q 008437 493 LLMLFR 498 (565)
Q Consensus 493 lL~~L~ 498 (565)
.|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 887764
No 90
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-09 Score=86.11 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=47.1
Q ss_pred CCCCCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 121 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 121 (565)
.....+++.||||++.+.+ |+++|||+|++.||.+|+. ...+||.|++++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 4455678999999999999 9999999999999999998 4789999998886543
No 91
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.79 E-value=3.4e-09 Score=82.77 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=42.5
Q ss_pred CcccccccccccCCc-eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 71 ~~f~CpI~~~~m~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
++..||||++.+.|| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999998 68899999999999999986 5789999988753
No 92
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=1.6e-09 Score=96.14 Aligned_cols=55 Identities=24% Similarity=0.512 Sum_probs=49.6
Q ss_pred CCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 008437 70 PEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 125 (565)
Q Consensus 70 p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn 125 (565)
++++.||||++.|.|| |+++|||+|++.||.+|+.. ..+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 99999999999999999986 5689999999987777665
No 93
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=7.2e-09 Score=82.37 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=45.3
Q ss_pred CCCCCCcccccccccccCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 66 MPLPPEELRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~~m~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.....++..||||++.|.+|+.+ +|||+|++.||.+|+.. +.+||.|++++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 34456788999999999988755 99999999999999986 4689999998754
No 94
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.78 E-value=4.1e-09 Score=78.59 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=41.9
Q ss_pred CcccccccccccCC----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~d----PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
+++.||||++.|.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999977 8889999999999999999874 88999998764
No 95
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.7e-09 Score=81.36 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.+++.||||++.|.|||+++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 367899999999999999999999999999873 5679999988753
No 96
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=80.25 Aligned_cols=51 Identities=20% Similarity=0.559 Sum_probs=43.1
Q ss_pred CCCCcccccccccccC---CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 68 LPPEELRCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
...++..||||++.|. ++++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456788999999884 5678999999999999999986 5679999988754
No 97
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.70 E-value=2.2e-07 Score=107.32 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=184.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchh--hhh--ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV--FTG--ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~--~i~--~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.++.++..+.+. ++..+..|+..|..+++..+.... .+. -.+.++.|++++.+ .+..++..|+.+|.++.
T Consensus 128 ~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 128 DLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH----SSPKIRSHAVACVNQFI 202 (852)
T ss_dssp THHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC----SSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHH
Confidence 4678888888887 889999999999999865443211 110 12345555565554 68899999999998886
Q ss_pred ccCchhhHHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHH
Q 008437 292 VNNNRNKELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDA 365 (565)
Q Consensus 292 ~~~~~nk~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~A 365 (565)
.... ..+.. .+.++.|..++..++ .+..|+.+|..++.... ..+.. .+.++.++.++.+. +..++..|
T Consensus 203 ~~~~---~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a 276 (852)
T 4fdd_A 203 ISRT---QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM--DRLLPHMHNIVEYMLQRTQDQ-DENVALEA 276 (852)
T ss_dssp TTTC---HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred hccc---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHccCC-cHHHHHHH
Confidence 4322 11211 256788888887764 35668888887765321 11211 25778888888887 88999999
Q ss_pred HHHHHHhccCCCChHHHHH--cCchHHHhhcc-----------CC-----------CChHHHHHHHHHHHHHhcCcccHH
Q 008437 366 LHALYNLSTIPSNIPNLLS--AGIISGLQSLA-----------VP-----------GDPMWTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 366 l~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll-----------~~-----------~~~~~~e~al~~L~nLa~~~~~r~ 421 (565)
+..+..++.....+..+.. ...++.|+..+ .+ .+..++..+..+|..|+.... .
T Consensus 277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~ 354 (852)
T 4fdd_A 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--D 354 (852)
T ss_dssp HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--G
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--H
Confidence 9999999876533332211 24566666644 22 122456778888888876432 1
Q ss_pred HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
.++. ..++.|.+++.+.+...++.|+.+|..|+....+.... .-.++++.|+.++.+.++.+|..|..+|..+.+.-
T Consensus 355 ~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 355 ELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2222 45677777788889999999999999999876542221 22467888999999999999999999999888753
No 98
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.69 E-value=7.3e-08 Score=111.26 Aligned_cols=270 Identities=13% Similarity=0.051 Sum_probs=179.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.++..+.+. +.++|..|++.|..++...++.-.... .++++.++.++.+ .+..++..|+.++..++. ..
T Consensus 215 ~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~----~~~~vr~~a~e~l~~l~~-~~ 287 (852)
T 4fdd_A 215 SFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQD----QDENVALEACEFWLTLAE-QP 287 (852)
T ss_dssp HHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHTT-ST
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccC----CcHHHHHHHHHHHHHHhc-ch
Confidence 4556677777776 899999999999999876543221111 2467777777765 678899999999999874 22
Q ss_pred hhhHHHHh--cCchHHHHHHhc----------CC--------------cHHHHHHHHHHHhcCCCCCchhhccCCchHHH
Q 008437 296 RNKELMLA--AGVIPLLEKMIS----------NS--------------NSHGAATALYLNLSFLDDAKPIIGSSHAVPFL 349 (565)
Q Consensus 296 ~nk~~i~~--~G~i~~Lv~lL~----------s~--------------~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~L 349 (565)
..+..+.. ...+|.|+..+. .. ..+..|+.+|..|+.... ...+ ...++.|
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~--~~l~~~l 364 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELL--PHILPLL 364 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGH--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHH--HHHHHHH
Confidence 23332211 145677777662 11 124456667766664311 1111 2467888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc--HHHHhcCC
Q 008437 350 VELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG--KEEMNSTP 427 (565)
Q Consensus 350 v~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~--r~~i~~~~ 427 (565)
..+|.+. +...++.|+.+|.+++........-.-.++++.|+.++.+.++.++..++.+|.+++..-.. ..... .
T Consensus 365 ~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~ 441 (852)
T 4fdd_A 365 KELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--K 441 (852)
T ss_dssp HHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--H
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--H
Confidence 8888887 89999999999999986543211112256788888888888999999999999999863211 11111 1
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
..++.|++.|.+.++.+++.|+.+|.++|......... .-.++++.|+.++.....+....+..++..+..
T Consensus 442 ~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999999643321111 113567777777777666666666666666654
No 99
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=84.86 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=44.1
Q ss_pred CCCcccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 69 PPEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
..++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||.|++++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 3567899999999988 888999999999999999985 6799999988754
No 100
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.67 E-value=1.2e-08 Score=76.13 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=42.2
Q ss_pred CCcccccccccccCC---ceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYD---PVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 70 p~~f~CpI~~~~m~d---PV~~~-~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
.++..||||++.|.+ +++++ |||.|++.||.+|+.. +.+||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 356789999999999 88887 9999999999999976 678999998763
No 101
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=81.56 Aligned_cols=49 Identities=18% Similarity=0.505 Sum_probs=43.5
Q ss_pred CCcccccccccccCCc---eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDP---VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dP---V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.++..||||++.|.++ ++++|||.|++.||.+|+.. +.+||.|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4578899999999998 78899999999999999986 5789999988764
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.65 E-value=9.8e-08 Score=107.80 Aligned_cols=191 Identities=16% Similarity=0.097 Sum_probs=144.1
Q ss_pred chHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHH-HHhcCCCCHHHHHHHHHHHHHhccCC--CChH
Q 008437 306 VIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLV-ELCKGKTEHQCKLDALHALYNLSTIP--SNIP 380 (565)
Q Consensus 306 ~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv-~lL~~~~~~~~~~~Al~aL~nLs~~~--~nk~ 380 (565)
.|.+|+..|+++ +.+..|+++|.+|+.+...+..+...++|..++ .+|.+. +.+++..|+++|.||+.+. +.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 344566778876 457789999999998777888888888887765 466666 8999999999999999754 5788
Q ss_pred HHHHcCchHHHhhccCCC--------------C-------hHHHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHHHHhh
Q 008437 381 NLLSAGIISGLQSLAVPG--------------D-------PMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLD 438 (565)
Q Consensus 381 ~iv~~G~v~~Lv~Ll~~~--------------~-------~~~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv~lL~ 438 (565)
.+++.|++++|+.++... . ..+.+.++.+|++||... +....+... ++++.|+..|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-QTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-HHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-ccHHHHHHHHH
Confidence 899999999999865320 0 134567889999999754 445566664 89999999885
Q ss_pred c---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHH---HHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 439 T---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA---LVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 439 ~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~---Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
. ....++..|+.+|+.|+..+....+.+.+.|.... |+.+. ..+...+.-+..+|.++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHhh
Confidence 4 34678999999999999999888888888775433 33333 3444456778888888653
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.65 E-value=5.7e-08 Score=109.74 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=128.2
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcC--cccH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS--AAGK 420 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~--~~~r 420 (565)
..|.+|++.|++. ++..+..|+.+|.||+.+..++..++..|+|..++. ++.+.+..+++.|+++|.||+.. .+.+
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3566788889998 899999999999999998889999999999998877 88889999999999999999974 4666
Q ss_pred HHHhcCCCCHHHHHHHhhcCC---------------------HHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhh
Q 008437 421 EEMNSTPGLVSGLATVLDTGE---------------------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS 479 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~s---------------------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~ 479 (565)
..++.. |+++.|..+|.... ....++++.+|++||..+.+....+...|+++.|+.++
T Consensus 113 ~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 778886 89999999885311 13456789999999998887777888899999998765
Q ss_pred hcC---ChhHHHHHHHHHHHHHhh
Q 008437 480 VNG---STRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 480 ~~~---s~~~k~~A~~lL~~L~~~ 500 (565)
.+. ...++..|...|..|.+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc
Confidence 442 356888888888888754
No 104
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.64 E-value=1.8e-08 Score=87.18 Aligned_cols=50 Identities=16% Similarity=0.394 Sum_probs=42.6
Q ss_pred CCcccccccccccCCce------------------ecCCCcccchHHHHHHHh----cCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPV------------------IIASGQTYERICIEKWLS----DGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV------------------~~~~g~ty~r~~I~~~~~----~~~~~cP~t~~~l~~ 119 (565)
+.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34568999999999886 789999999999999996 346789999988753
No 105
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.59 E-value=7e-07 Score=94.40 Aligned_cols=278 Identities=14% Similarity=0.083 Sum_probs=179.8
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc
Q 008437 216 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~ 293 (565)
+.++.++..+.+.. ++..+..|+..|..+++.. .+.-... ...+++.++.+|.+. ..+..++..|+.+|.++...
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 56788888887743 6889999999999998643 2111111 134677778888662 11688999999999986421
Q ss_pred Cchhh-HHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 294 NNRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 294 ~~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
-..+- ......-.++.|...+.+++. +..++.+|..+..... .+..+. .+.++.++..+++. +..++..|+..
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~~~ 282 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGIEF 282 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHH
Confidence 11110 001111135566666655543 4557777776654321 111121 16778888888877 88999999999
Q ss_pred HHHhccCC------------------CChHHHHH---cCchHHHhhccCC-------CChHHHHHHHHHHHHHhcCcccH
Q 008437 369 LYNLSTIP------------------SNIPNLLS---AGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGK 420 (565)
Q Consensus 369 L~nLs~~~------------------~nk~~iv~---~G~v~~Lv~Ll~~-------~~~~~~e~al~~L~nLa~~~~~r 420 (565)
+..++... .....+++ ..++|.|++.+.+ .+..++..|+.+|..|+..-.
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-- 360 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--
Confidence 98887532 01111121 3356667664422 234677888889988887432
Q ss_pred HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 421 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
..+.. .+++.+...|.+.+...++.|+.+|..++.... +.... .-..++|.|+.++.+..+++|..|..+|..+.+
T Consensus 361 ~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 361 DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 23332 466777778888889999999999999997442 11111 115789999999999999999999999999987
Q ss_pred hccc
Q 008437 500 QRQR 503 (565)
Q Consensus 500 ~r~~ 503 (565)
.-..
T Consensus 438 ~~~~ 441 (462)
T 1ibr_B 438 LLPE 441 (462)
T ss_dssp HGGG
T ss_pred hccc
Confidence 7544
No 106
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.58 E-value=1.1e-08 Score=81.52 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=40.8
Q ss_pred CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.+++.||||++.+.|||+++|||+ ||+.||.+| .+||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 357899999999999999999999 999999999 679999988753
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.55 E-value=4.7e-07 Score=98.89 Aligned_cols=259 Identities=11% Similarity=0.002 Sum_probs=180.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
++.+...+.+. ++.+|..++..|..++..-.. .......++.|..+|.+ .+..++..++.+|..+...-.
T Consensus 326 ~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~-- 395 (588)
T 1b3u_A 326 LPCIKELVSDA-NQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKD----ECPEVRLNIISNLDCVNEVIG-- 395 (588)
T ss_dssp HHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTC----SCHHHHHHHHTTCHHHHHHSC--
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhcC--
Confidence 34455566665 889999998888888643211 11123467888888876 678899999888887753211
Q ss_pred hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 298 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
.. ......+|.|..++...+. +..++.++..++..-.. .......++.++.+|.+. +..+++.|+.+|..++..
T Consensus 396 ~~-~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 396 IR-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence 11 1223568888888876643 45566677666531100 011234678899999888 889999999999999754
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
-+.. .....++|.|+.++.+.+..++..++.+|..++..- +...+.. ..++.|+.++.+.++.++..++.+|..+
T Consensus 472 ~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~~--~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 472 FGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITTK--HMLPTVLRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHH--HTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-CHHHHHH--HHHHHHHhhCCCCCchHHHHHHHHHHHH
Confidence 3222 223457888888877788899999999999988632 2223333 5889999999988999999999999999
Q ss_pred hcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 456 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 456 c~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
+..-.. ......++|.|..+..+.+..+|..|..+|..+.
T Consensus 547 ~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 547 GPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp GGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 864332 1233567788888888899999999999998765
No 108
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.54 E-value=2.4e-08 Score=103.43 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=44.6
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
...||||++.+.|||+++|||+||+.||..|+..+..+||.|++++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4789999999999999999999999999999986678999999987653
No 109
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.52 E-value=1.3e-06 Score=95.30 Aligned_cols=262 Identities=16% Similarity=0.112 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
++.+...+.+. ++.+|..|+..|..++..... .......++.|..++.+ ++..++..|+.+|..++...+.
T Consensus 166 ~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 166 RQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp HHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCH-
Confidence 34444555655 899999999999999854321 12235667888888876 6788999999999988743221
Q ss_pred hHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 298 KELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
......++|.+..++...+ .+..|+.+|..+...-.. .......++.++.++.+. ++.++..|+.+|..++..
T Consensus 237 --~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 237 --EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence 1223357888888887664 356677777766532110 111235789999999988 899999999999999854
Q ss_pred CC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 376 PS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 376 ~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
-. .+....-..+++.+..++.+.+..++..++.+|..++..- +...... ..++.+..++.+.++.++..|+.+|.
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~--~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIE--HLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-hHhHHHH--HHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 32 2222333467788888888888888898888888887532 1222222 46778888888778888888888777
Q ss_pred HhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 454 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 454 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
.++..-... .....++|.|..+..+.+.++|..+..+|..+..
T Consensus 389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 389 CVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 766532110 1112345555555555555666666655555543
No 110
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.51 E-value=3.2e-06 Score=93.73 Aligned_cols=262 Identities=12% Similarity=0.057 Sum_probs=169.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.+...|.+. ++.+|.+|+.+|..+...+++ .+...++++.|..+|.+ .++.++..|+.+|..++..+++
T Consensus 122 l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 122 LCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCC
Confidence 345577778776 999999999999999876654 23335788999999976 7899999999999999864432
Q ss_pred hhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 297 NKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
....-...+.+..|+..|...+.. ...+.+|..+...++ .. ....++.|..+|++. +..++..|+++|.++..
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~--~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--RE--AQSICERVTPRLSHA-NSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HH--HHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCC
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HH--HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhh
Confidence 211111223466667666554433 334444444432211 11 135678888888887 88999999999999874
Q ss_pred ----CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC-cc------------------c-HHHH-----hc
Q 008437 375 ----IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AA------------------G-KEEM-----NS 425 (565)
Q Consensus 375 ----~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~-~~------------------~-r~~i-----~~ 425 (565)
+++.... +-..+++.|+.++. .++.++..++..|..++.. ++ - +.++ +.
T Consensus 269 ~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 269 LLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp SCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence 2222222 22345566666553 5677777777777776641 00 0 1111 11
Q ss_pred CCC----CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 426 TPG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 426 ~~g----~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
+.. .+..|.+++...+...+..++.++..+|..-+... ...++.|+.++....+.++..+...|+.+-
T Consensus 347 ~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 347 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 112 23445555666789999999999999998664322 345788888888777777777666666643
No 111
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.49 E-value=2.2e-08 Score=88.60 Aligned_cols=57 Identities=25% Similarity=0.530 Sum_probs=50.7
Q ss_pred CCCcccccccccccCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 008437 69 PPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 126 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pn~ 126 (565)
.++.+.||||++.+.+| |+++|||+|+..||.+|+.. ..+||.|+.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 35789999999999998 89999999999999999986 57999999999888877753
No 112
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.45 E-value=6.9e-06 Score=90.98 Aligned_cols=258 Identities=15% Similarity=0.122 Sum_probs=173.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
..+.+.|.+. ++.+|..|+..|..+. .++.. ...++.+..+|.+ .++.++..|+.+|.++...+++
T Consensus 89 n~l~kdL~~~-n~~ir~~AL~~L~~i~--~~~~~-----~~l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~-- 154 (591)
T 2vgl_B 89 NSFVKDCEDP-NPLIRALAVRTMGCIR--VDKIT-----EYLCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQ-- 154 (591)
T ss_dssp HHHGGGSSSS-SHHHHHHHHHHHHTCC--SGGGH-----HHHHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCC--
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHcCC--hHHHH-----HHHHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChh--
Confidence 4455556665 8999988888777764 22222 2235678888876 7899999999999999754332
Q ss_pred HHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhh-ccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 299 ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPII-GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 299 ~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I-~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
.+.+.+.++.|..+|...+. +.+|+.+|..+...+.....+ ...+.+..|+..|.+. ++-.+...+.+|..++..
T Consensus 155 -~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 155 -MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp -CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCC
T ss_pred -hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCC
Confidence 33345789999999987653 566888998887654321111 1135577888888777 788888888888888743
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhc----CcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHH
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 451 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~----~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~ 451 (565)
++. . ...+++.+..++.+.+..+...|+.++..+.. .++....+.. ..++.|+.++. .++.++..|+.+
T Consensus 233 ~~~--~--~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~~-~d~~vr~~aL~~ 305 (591)
T 2vgl_B 233 DDR--E--AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK--KLAPPLVTLLS-GEPEVQYVALRN 305 (591)
T ss_dssp SHH--H--HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH--HTHHHHHHHTT-SCHHHHHHHHHH
T ss_pred ChH--H--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH--HHHHHHHHHhc-CCccHHHHHHHH
Confidence 321 1 23467788888888889999999999999874 3444444443 45667776654 678888888888
Q ss_pred HHHhhcCC------------------hHHHHHHH-------hC----CcHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 008437 452 LFLLCNGN------------------EKCCQMVL-------QE----GVIPALVSISVNGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 452 L~~Lc~~~------------------~~~~~~v~-------~~----G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~ 499 (565)
|..+.... ...+...+ .+ .+++.|...+.+.+...|..|...|..+..
T Consensus 306 l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 306 INLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp HHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 87776311 11111111 12 234455566677888888888888877764
No 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.3e-08 Score=76.89 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=39.7
Q ss_pred CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.+++.||||++.+.|||+++|||+ ||+.|+.+ ...||.|++++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 457889999999999999999999 99999964 3679999998765
No 114
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=5.6e-08 Score=81.10 Aligned_cols=66 Identities=11% Similarity=0.267 Sum_probs=48.8
Q ss_pred CcccccccccccCCceec---CCCcccchHHHHHHHhc----C---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 008437 71 EELRCPISLQLMYDPVII---ASGQTYERICIEKWLSD----G---HSTCPK--TQQK--LPHLCLTPNYCVKGLIASWC 136 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~---~~g~ty~r~~I~~~~~~----~---~~~cP~--t~~~--l~~~~l~pn~~l~~~i~~~~ 136 (565)
+.|.||||++.+.+|+++ +|||+||+.||.+|+.. | ...||. |+.. +.+.. +.+....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHHH
Confidence 578999999999999875 69999999999999863 3 247999 9887 54322 22333355666665
Q ss_pred H
Q 008437 137 E 137 (565)
Q Consensus 137 ~ 137 (565)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.2e-07 Score=74.29 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=40.1
Q ss_pred CcccccccccccCC--------------ceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYD--------------PVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 71 ~~f~CpI~~~~m~d--------------PV~~-~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45669999999988 4555 59999999999999986 5799999988753
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.22 E-value=2.9e-05 Score=86.54 Aligned_cols=249 Identities=14% Similarity=0.110 Sum_probs=154.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.+...|.+. ++.+|.+|+..+..+...+++... ++++.|..+|.+ .|+.++..|+.+|..++..+++
T Consensus 143 l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 143 LAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChH
Confidence 356677888887 999999999999999877664322 566677777765 7899999999999999743222
Q ss_pred hhHHHHhcCchHHHHHHhcC---------------CcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC---
Q 008437 297 NKELMLAAGVIPLLEKMISN---------------SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK--- 356 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s---------------~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~--- 356 (565)
....+ ...++.|+.+|.. .+. +...+.+|..+...+.. . ....++.|..++...
T Consensus 213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~-~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---S-SEAMNDILAQVATNTETS 286 (618)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---H-HHTTHHHHHHHHHTSCCS
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHHHHhccccc
Confidence 11122 2578888887753 122 34456666666543211 0 123455566655311
Q ss_pred --CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHH
Q 008437 357 --TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 434 (565)
Q Consensus 357 --~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv 434 (565)
.+..+.-.|+.++.++...+ .+.. .++..|..++.+.++.++..|+.+|..++... ..++. .....++
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~ 356 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSES----GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIV 356 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHH
Confidence 13467777888887775421 2222 46677777776677778888888888777632 22232 2456677
Q ss_pred HHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 435 TVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 435 ~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..+.+.+..++..|+.+|..++.... ... ++..|+..+.+.+...|+.+...|..+.
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la 413 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAA 413 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77777777788888888888776542 111 1244444444555555655555555554
No 117
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.21 E-value=7.4e-07 Score=68.72 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=42.4
Q ss_pred CcccccccccccCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
++..|+||++-+.|+|++ +|||. ||..|+.+|+.. +..||.|++++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 567899999999999988 99999 899999999975 578999999875
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.15 E-value=1.1e-06 Score=67.48 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=42.2
Q ss_pred CcccccccccccCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 71 EELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 71 ~~f~CpI~~~~m~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
.+..|+||++-++|+|++ +|||. ||+.|+.+|+.. ...||.|++++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 456899999999999988 99998 999999999976 478999999875
No 119
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.11 E-value=1.7e-06 Score=73.63 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=39.6
Q ss_pred cccccccccccCCc------------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDP------------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~dP------------------V~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
+-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45699999999987 34789999999999999986 789999998753
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.11 E-value=0.00012 Score=83.89 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=175.5
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437 216 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~ 292 (565)
+.++.++..+.+.. ++.+|..++..|..++..-. ...+.. ...++.|+..|.+. ..+..++..|+.+|.++..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Confidence 45677888887643 67889999999999986421 011111 34566666777652 1257899999999998763
Q ss_pred cCchh-hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437 293 NNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 367 (565)
Q Consensus 293 ~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~ 367 (565)
.-..+ .........++.+...+...+. +..++.+|..+..... ....+ ....++.++..+.+. +..++..|+.
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~al~ 281 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIE 281 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 21111 0011111256677777765543 4557777766653211 11111 126788888888777 8889999999
Q ss_pred HHHHhccCC-------------------CChHHH--HHcCchHHHhhccC-------CCChHHHHHHHHHHHHHhcCccc
Q 008437 368 ALYNLSTIP-------------------SNIPNL--LSAGIISGLQSLAV-------PGDPMWTEKSLAVLLNLAASAAG 419 (565)
Q Consensus 368 aL~nLs~~~-------------------~nk~~i--v~~G~v~~Lv~Ll~-------~~~~~~~e~al~~L~nLa~~~~~ 419 (565)
.+.+++... .....+ .-..+++.+++++. +.+..++..|+.+|..|+..-.
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~- 360 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-
Confidence 998887431 000111 11345677777543 2345677788888888876332
Q ss_pred HHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 420 r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..++. ..++.+...+.+.+...++.|+.+|..++.... +..... -..++|.|+..+.+..+.+|..|..+|..+.
T Consensus 361 -~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 361 -DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp -GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 12222 355666677777889999999999999997543 222222 2457888998888899999999999999988
Q ss_pred hhcc
Q 008437 499 EQRQ 502 (565)
Q Consensus 499 ~~r~ 502 (565)
+.-.
T Consensus 437 ~~~~ 440 (876)
T 1qgr_A 437 ELLP 440 (876)
T ss_dssp HHCG
T ss_pred HhCc
Confidence 7643
No 121
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.10 E-value=4e-05 Score=73.40 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=149.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.+..++..|... |..++.+|+..|..+.+.-+..-....-...++.++.++.+ .|..+...|+.+|..|-.+.+
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~----~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ----ENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS----TTHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHcCCC
Confidence 3556777888776 99999999999999998754433333335568999999987 789999999999998865444
Q ss_pred hhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008437 296 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 373 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs 373 (565)
-....+.. ++..|..++.+++. ++.|+-.+..|...... .+++..|..++.+. +.+++..++.+|.|++
T Consensus 108 L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia 178 (265)
T 3b2a_A 108 MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSP-DLYTKVAGFCLFLNML 178 (265)
T ss_dssp BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHG
T ss_pred CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCC-ChhHHHHHHHHHHHhh
Confidence 33444433 46778888887754 57788888877333222 35668889999777 9999999999999999
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhh--------cCCHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD--------TGELIEQ 445 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~--------~~s~~~~ 445 (565)
...++...+ .+++..+-.++++.++.+++.|+.+|..+...+-- ...++.+..++. .+.|..+
T Consensus 179 ~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 179 NSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL-------ENVKIELLKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp GGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC-------SCCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred cccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc-------HhHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 755433322 23444556677888999999999999999886422 244555544442 3566666
Q ss_pred HHHH
Q 008437 446 EQAV 449 (565)
Q Consensus 446 e~Av 449 (565)
+.|-
T Consensus 250 ~ka~ 253 (265)
T 3b2a_A 250 LKAK 253 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 122
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=6.2e-07 Score=92.31 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=40.8
Q ss_pred CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.+++.||||++.+.|||+++|||+ ||+.||.+| ..||.|+.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 679999988753
No 123
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=5e-06 Score=64.82 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 68 LPPEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 68 ~~p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.-.++..|+||++-..|+|+++|||. ||..|++. ...||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 33467899999999999999999999 99999983 4689999998764
No 124
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.08 E-value=1.7e-05 Score=95.07 Aligned_cols=268 Identities=12% Similarity=0.106 Sum_probs=177.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..++..+.+. +.++|..|...|.+..+.+...-..-.....++.|++.|.+ .+..+|..|+.+|.+++..-..
T Consensus 7 ~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 7 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCCH
Confidence 467888999887 99999999999998775432110001113457778888865 6899999999999999743222
Q ss_pred hhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCc----hhh--ccCCchHHHHHHhcC-CCCHHHHHHHHH
Q 008437 297 NKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAK----PII--GSSHAVPFLVELCKG-KTEHQCKLDALH 367 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k----~~I--~~~g~i~~Lv~lL~~-~~~~~~~~~Al~ 367 (565)
... ..+++.|+..|.+++ .+..|+.+|..++..-... ... .-...+|.|+..+.+ + +...+..|+.
T Consensus 82 ---~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~ 156 (1230)
T 1u6g_C 82 ---YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALD 156 (1230)
T ss_dssp ---HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHH
Confidence 111 235677777776553 3445555665554321110 011 113578999999984 6 8899999999
Q ss_pred HHHHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcC-CHHH
Q 008437 368 ALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIE 444 (565)
Q Consensus 368 aL~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~-s~~~ 444 (565)
+|..++.... .... -..+++.|+..+.+.+..+++.|+.+|..++..... .+. ...++.|+..|... +...
T Consensus 157 ~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 157 IMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhH
Confidence 9999984211 1111 134667788877778889999999999999975432 222 25688888888654 2456
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 445 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 445 ~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
+..++.+|..++..-+..... .-..+++.++..+.+.++.+|+.|..+|..+...-
T Consensus 231 r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp CTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 677888888877643321000 11468888888888888999999999988877643
No 125
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.07 E-value=6.8e-07 Score=72.00 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=40.0
Q ss_pred CCcccccccccccCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.++..|+||++.+.|||+++|||. ||+.|+.+|. .||.|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 456789999999999999999999 9999999773 79999998764
No 126
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.05 E-value=3.6e-05 Score=88.22 Aligned_cols=275 Identities=8% Similarity=0.033 Sum_probs=171.3
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCccc-hhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEA-RVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.+..++..|.... +.++|..|++.|..++..-... ........+++.+...+.+ .+..++..++.+|..+....
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHh
Confidence 3455666676542 5889999999999987532111 0001111245666666544 67889999999999887533
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCC-------------------CCchhhc--cCCchHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-------------------DAKPIIG--SSHAVPFLVE 351 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~-------------------~~k~~I~--~~g~i~~Lv~ 351 (565)
...-...+....++.++..+...+. +..|+.++..++... .....+. -...++.++.
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 3221222333678888877765532 444555555554210 0001110 0245677888
Q ss_pred HhcCC------CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc--cHHHH
Q 008437 352 LCKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA--GKEEM 423 (565)
Q Consensus 352 lL~~~------~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~--~r~~i 423 (565)
+|... .+...++.|+.+|..|+..-.. .++ ..+++.+...+.+.+..+++.++.+|..++.... .....
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 405 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 87531 1456888899998888753221 112 2355556666677888999999999999987532 22233
Q ss_pred hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
.. ..++.|+..|.+.++.++..|+.+|.+++..-.... ..-.-..+++.|+..+.+. +++++.|..+|..+...-
T Consensus 406 ~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 406 VI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 32 578889999988899999999999999997533210 0000124567777766664 889999999999987653
No 127
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.03 E-value=7.7e-05 Score=85.28 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=168.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch-
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR- 296 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~- 296 (565)
+..+...+.+. ++++|..|++.|..++...++.-.......+++.++..+.+ .+..++..|+.++..++.....
T Consensus 226 l~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 226 MQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS----PNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555 89999999999999986544321111111455666666654 6788999999988888632100
Q ss_pred -------------hhHHHHh--cCchHHHHHHhcCC---------cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHH
Q 008437 297 -------------NKELMLA--AGVIPLLEKMISNS---------NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVEL 352 (565)
Q Consensus 297 -------------nk~~i~~--~G~i~~Lv~lL~s~---------~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~l 352 (565)
.+..+.. ..+++.|+..|... ..+..|..+|..++..-. ...+ ...++.+..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~--~~l~~~l~~~ 377 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHIL--EPVLEFVEQN 377 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGH--HHHHHHHHHH
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHH--HHHHHHHHHH
Confidence 0001111 34678888887642 234557777777764211 1111 2355677777
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccH---HHHhcCC
Q 008437 353 CKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK---EEMNSTP 427 (565)
Q Consensus 353 L~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r---~~i~~~~ 427 (565)
|.+. +...++.|+.+|..++.... ...+.. ..+++.|+..+.+.++.++..++.+|..++..-... .....
T Consensus 378 l~~~-~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-- 453 (861)
T 2bpt_A 378 ITAD-NWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP-- 453 (861)
T ss_dssp TTCS-SHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH--
T ss_pred cCCC-ChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH--
Confidence 7777 88999999999999985432 111111 257888888777888999999999999988632110 11111
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-----hHHHHHHHhCCcHHHHHHhhhcC--ChhHHHHHHHHHHHHHhh
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-----EKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-----~~~~~~v~~~G~v~~Lv~L~~~~--s~~~k~~A~~lL~~L~~~ 500 (565)
..++.|++.|... +.++..|+.+|.+++..- ......+ ..+++.|+.++.+. ++.+|..|..+|..+...
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 3567777777654 889999999999887531 1111111 24567777777643 378898898888887765
Q ss_pred cc
Q 008437 501 RQ 502 (565)
Q Consensus 501 r~ 502 (565)
..
T Consensus 531 ~~ 532 (861)
T 2bpt_A 531 AT 532 (861)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 128
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.96 E-value=7.5e-05 Score=75.57 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=126.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH-hccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437 347 PFLVELCKGKTEHQCKLDALHALYN-LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 425 (565)
Q Consensus 347 ~~Lv~lL~~~~~~~~~~~Al~aL~n-Ls~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~ 425 (565)
..+++-|.++ +.+.++.++.-|.. ++.+..-...++..|++..|+.+..+++...+..++.+|.+|.....|...++.
T Consensus 121 ~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 3444555566 67788889988888 666778899999999999999988888999999999999999999999999998
Q ss_pred CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhC--------C--cHHHHHHhhh---cCChhHHHHHHH
Q 008437 426 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE--------G--VIPALVSISV---NGSTRGRDKAQR 492 (565)
Q Consensus 426 ~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--------G--~v~~Lv~L~~---~~s~~~k~~A~~ 492 (565)
++..|..|+.++.+....+...|+.+|..+|..++.....+.++ | -+..|+.++. +++..++.+|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 88999999999998889999999999999998886555544443 1 2667888886 689999999999
Q ss_pred HHHHHH
Q 008437 493 LLMLFR 498 (565)
Q Consensus 493 lL~~L~ 498 (565)
|+..+-
T Consensus 280 LIN~lL 285 (339)
T 3dad_A 280 LINKTL 285 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888743
No 129
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=1.2e-05 Score=64.68 Aligned_cols=50 Identities=14% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCccccccccccc--CCceecCCC-----cccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLM--YDPVIIASG-----QTYERICIEKWLSDG-HSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m--~dPV~~~~g-----~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 119 (565)
.++-.|+||++-+ .+|++++|+ |.|-+.||++|+... ..+||+|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3567899999766 579999996 999999999999863 4789999998764
No 130
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.94 E-value=0.0003 Score=80.37 Aligned_cols=277 Identities=10% Similarity=0.068 Sum_probs=172.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhh--ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTG--ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~--~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~ 292 (565)
+.++.++..+.+..++..+..|+..|..+++.-. +.+ .+. ....++.|+..|.+. ..+..++..|+.+|.++..
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~--~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQST--ETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Confidence 4567777877664378889999999999986432 211 011 123455556666541 1278899999999988642
Q ss_pred cCchh-hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHhcCCCCHHHHHHHHH
Q 008437 293 NNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 367 (565)
Q Consensus 293 ~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~ 367 (565)
.-..+ .........++.|...+.+++. +..++.+|..+..... ....+. ...++.++..+.+. +..++..|+.
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~-~~~vr~~a~~ 288 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP-NDKVASMTVE 288 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 11111 0000112246666777766543 4556666666653211 111111 15666777777777 8899999999
Q ss_pred HHHHhccCCC-----------------C-hHHHHHcCchHHHhhccCC-------CChHHHHHHHHHHHHHhcCcccHHH
Q 008437 368 ALYNLSTIPS-----------------N-IPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 368 aL~nLs~~~~-----------------n-k~~iv~~G~v~~Lv~Ll~~-------~~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
++..++.... + ....+ ..+++.|+..+.. .+..++..+..+|..|+..-. ..
T Consensus 289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~ 365 (861)
T 2bpt_A 289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NH 365 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--Hh
Confidence 9998875421 0 01111 4577788875542 234677888899988886322 11
Q ss_pred HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
++. ..++.+.+.+.+.+...++.|+.+|..++.... ......+ ..+++.|+..+.+.++.+|..|..+|..+...-
T Consensus 366 ~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 366 ILE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp GHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 121 345556666667788999999999999997642 2222222 257888888888889999999999999888765
Q ss_pred cc
Q 008437 502 QR 503 (565)
Q Consensus 502 ~~ 503 (565)
..
T Consensus 443 ~~ 444 (861)
T 2bpt_A 443 AE 444 (861)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 131
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.93 E-value=5.3e-05 Score=79.78 Aligned_cols=234 Identities=7% Similarity=0.034 Sum_probs=145.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCccch-hhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~-~~~~q~~Al~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.++.++..|.... +..+|..|++.+..++..-.+.- ......-+++.|...+.+ .+..++..++.+|..++...
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHH
Confidence 4456677777653 68999999999998763211100 000001124445454443 67889999999999987432
Q ss_pred chhhHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCC------------CC------chhhcc---CCchHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLD------------DA------KPIIGS---SHAVPFLVE 351 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~------------~~------k~~I~~---~g~i~~Lv~ 351 (565)
.+.-...+..+.++.++..+...+ .+..|+..+..++... +. ...+.. ...+|.|++
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 211011111266777777776553 2445666555554321 00 001111 235677777
Q ss_pred HhcCC------CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc--HHHH
Q 008437 352 LCKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG--KEEM 423 (565)
Q Consensus 352 lL~~~------~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~--r~~i 423 (565)
.|... .+...+..|+.+|..|+..-.. .++ ..+++.+...+.+.+..+++.|+.+|..++..... -...
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 405 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77432 1346788999999998864331 222 24666677777788899999999999999974321 1111
Q ss_pred hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
+ +..++.|+..|.+.++.++..|+++|.+++..-
T Consensus 406 l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 406 V--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 468899999999999999999999999998643
No 132
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.92 E-value=0.00053 Score=76.25 Aligned_cols=254 Identities=13% Similarity=0.081 Sum_probs=165.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
+..+-..|.+. +...|.+++..|-.+.-.+.+. .-+....++++.+ .+...+..+..++..++..+++.
T Consensus 36 ~~~ir~~l~~~-~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s----~~~~~Krl~Yl~~~~~~~~~~e~ 104 (618)
T 1w63_A 36 CAAIRSSFREE-DNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIAS----QKFTDKRIGYLGAMLLLDERQDV 104 (618)
T ss_dssp HHHHHHHHTTT-CTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHS----SSHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHhhCC-CHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcC----CchHHHHHHHHHHHHHhCCCcHH
Confidence 44555667666 5666777666665553333221 2245566677776 67888888888888887432211
Q ss_pred hHHHHhcCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 298 KELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
.. -++..|.+-|.+++ .+..|+.+|.++... . +. ...++.+.++|.+. ++.+++.|+.+|.++...
T Consensus 105 ~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~----~-~~-~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 105 HL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS----E-MC-RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH----H-HH-HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH----H-HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH
Confidence 11 13566777777664 356688888888621 1 21 35678899999988 999999999999999863
Q ss_pred CCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc---------------C
Q 008437 376 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT---------------G 440 (565)
Q Consensus 376 ~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~---------------~ 440 (565)
.. .+++ +.++.|..++.+.++.++..|+.+|..++........... ..++.|+++|.. .
T Consensus 173 ~p---~~v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 173 VP---ELME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp CG---GGGG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred Ch---HHHH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 22 1222 6788888888888999999999999999876433222222 568888887753 3
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHH-------H----------------------Hh--------CCcHHHHHHhhhcCC
Q 008437 441 ELIEQEQAVSCLFLLCNGNEKCCQM-------V----------------------LQ--------EGVIPALVSISVNGS 483 (565)
Q Consensus 441 s~~~~e~Av~~L~~Lc~~~~~~~~~-------v----------------------~~--------~G~v~~Lv~L~~~~s 483 (565)
++..+-..+.+|..++..+++.... + .. ..++..|..++.+.+
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d 326 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNND 326 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSS
T ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC
Confidence 7888888888888888765431110 0 00 024455666666667
Q ss_pred hhHHHHHHHHHHHHHhh
Q 008437 484 TRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 484 ~~~k~~A~~lL~~L~~~ 500 (565)
+.+|.-|...|..+...
T Consensus 327 ~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQT 343 (618)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhh
Confidence 77777777666665543
No 133
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.91 E-value=0.00011 Score=71.20 Aligned_cols=179 Identities=17% Similarity=0.108 Sum_probs=128.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhc-ccccCCCHHHHHHHHHHHHHhhccCchhh
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNNNRNK 298 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~s~~~~~q~~A~~aL~nLa~~~~~nk 298 (565)
.++..+.+. +|..|..|+..|..++...+.....- -..+++.|...|. + .+..++..|+.+|..|+.. .+
T Consensus 19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~---l~ 89 (242)
T 2qk2_A 19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKD----SNVVLVAMAGKCLALLAKG---LA 89 (242)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHH---HG
T ss_pred HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHH---Hh
Confidence 477788776 99999999999999987633221100 1244666667773 4 6889999999999999842 22
Q ss_pred HHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 299 ELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 299 ~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
..+.. ...++.|+..+.... .+..|..+|..+..... + ...++.|...|++. ++.++..++..|..+..
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~--~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L--EAQQESIVESLSNK-NPSVKSETALFIARALT 162 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H--HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHH
Confidence 22221 246888888887764 35668888887754321 1 24678899999988 89999999999999654
Q ss_pred CCC----ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437 375 IPS----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 375 ~~~----nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~ 416 (565)
... ....+ ..+++.|+.++.+.+..++..|..+|..++..
T Consensus 163 ~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 163 RTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp TCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 322 12222 25889999988889999999999999988863
No 134
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.82 E-value=0.00054 Score=65.63 Aligned_cols=222 Identities=15% Similarity=0.112 Sum_probs=155.0
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHH--HHHHHHHHHhcCC-CCC
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DDA 336 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~A~aaL~nLs~~-~~~ 336 (565)
.+..|+.+|.. .|..++.+|+.+|-.+-..-+.......=...++.++.++.+.+.+ -.|+.+|..|-.. +-.
T Consensus 34 ~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 34 ALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 46778888866 7899999999999998654223333333346799999999887654 4477788766443 222
Q ss_pred chhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437 337 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 337 k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~ 416 (565)
..... -.+..|..++.++ +.-....|+..|.-|......+ +++..|..|+.+.++.++..++.+|.+++..
T Consensus 110 ~~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 110 SKTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 22222 2568899999988 8889999999999994333222 3456677777889999999999999999985
Q ss_pred cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCcHHHHH-Hhh-hcCChhHHHHHHHH
Q 008437 417 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALV-SIS-VNGSTRGRDKAQRL 493 (565)
Q Consensus 417 ~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~v~~Lv-~L~-~~~s~~~k~~A~~l 493 (565)
.+...-+- ..+.-+-.+|.+.++..++.|+.+|..+....-. +.+.. --.+-..+ .|. ..|.+..+.+|..+
T Consensus 181 S~D~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 181 SADSGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--ENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CSSCCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred cCCHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 54332221 3445567788889999999999999999886521 11111 11122333 355 67999999999988
Q ss_pred HHHHHh
Q 008437 494 LMLFRE 499 (565)
Q Consensus 494 L~~L~~ 499 (565)
-..+..
T Consensus 256 ~~~le~ 261 (265)
T 3b2a_A 256 SDLIDS 261 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 135
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.79 E-value=0.0014 Score=72.99 Aligned_cols=252 Identities=12% Similarity=0.153 Sum_probs=156.1
Q ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVL--NEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L--~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.++.+.+.| .+. ++-+|.+|+..+..+.+.+++. +...++++.|..+|.+ .|+.++..|+.+|..++..+
T Consensus 147 l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 147 FAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhC
Confidence 345566777 555 8999999999999998766532 2236899999999976 68999999999999987543
Q ss_pred chhhHHHHhcCchHHHHHHhc----CC-------------cH--HHHHHHHHHHhcCCCC--CchhhccCCchHHHHHHh
Q 008437 295 NRNKELMLAAGVIPLLEKMIS----NS-------------NS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELC 353 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~----s~-------------~~--~~~A~aaL~nLs~~~~--~k~~I~~~g~i~~Lv~lL 353 (565)
. ..+ ...++.++..|. .+ +. +.....+|..+...++ .+..+. ..++.++..+
T Consensus 219 ~---~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~ 291 (621)
T 2vgl_A 219 P---EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKA 291 (621)
T ss_dssp H---HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHH
T ss_pred h---HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhh
Confidence 2 211 123455554442 22 12 2223334433332211 111111 2333333322
Q ss_pred cCCC--------C--HHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 354 KGKT--------E--HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 354 ~~~~--------~--~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
.+.. + ..+.-.|+.++..+...+ .++. .++..|..++.+.++.++..++..|..++........+
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~ 366 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV 366 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH
Confidence 1110 1 256677888888886322 2222 36777888887788999999999999998865333333
Q ss_pred hcCCCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 424 NSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
. .....++..|. +.+..++..|+.+|..++..+ +... ++..|...+...+...++.+...+..+.
T Consensus 367 ~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 367 K---THIETVINALKTERDVSVRQRAVDLLYAMCDRS--NAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp H---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh--hHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3 35777888888 788999999999999998543 3332 2334445455556666666665555554
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.71 E-value=0.00024 Score=68.91 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=126.6
Q ss_pred HHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhcc-CCchHHHHHHhc-CCCCHHHHHHHHHHHHHhccCCCChHHHH
Q 008437 309 LLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIGS-SHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLL 383 (565)
Q Consensus 309 ~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~~-~g~i~~Lv~lL~-~~~~~~~~~~Al~aL~nLs~~~~nk~~iv 383 (565)
.+...+.+.+ .+..|+..|..+... +.... .. ...++.|..+|. +. +..++..|+.+|..|+..-...-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566666554 344466666655432 22110 11 246788888884 76 89999999999999985322111111
Q ss_pred HcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhh-cCChH-
Q 008437 384 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC-NGNEK- 461 (565)
Q Consensus 384 ~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc-~~~~~- 461 (565)
-.-+++.|+..+.+....+++.+..+|..++.... -. ..++.|...|.+.++.+++.++..|..+. ..+++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23478888888888889999999999999987542 11 35677888888889999999999999954 43332
Q ss_pred HHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcc
Q 008437 462 CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 502 (565)
Q Consensus 462 ~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~ 502 (565)
.....+ ..++|.|+.++.+...++|..|...|..+...-.
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 111122 2578899999999999999999999998776543
No 137
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.70 E-value=5.2e-06 Score=71.77 Aligned_cols=45 Identities=20% Similarity=0.500 Sum_probs=0.0
Q ss_pred ccccccccccCCce-----------------e-cCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPV-----------------I-IASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~m~dPV-----------------~-~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
=.|+||++-|.+|. + ++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 36999999998853 2 489999999999999986 789999998753
No 138
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.0003 Score=69.02 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=126.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRL-LLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~-La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
.+...|.+. +|..|..|+..|.. ++.+.++....-.. ...+..|...|.. ..+..++..|+.+|..|+.. -
T Consensus 20 ~f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~---l 92 (249)
T 2qk1_A 20 DFQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---DANIQAVALAAQSVELICDK---L 92 (249)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHH---H
T ss_pred hHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHh---c
Confidence 456677777 99999999999999 87543322210112 2446666677732 16788999999999999842 2
Q ss_pred h-HHHH-h--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCC-CCCchhhc-cCCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 298 K-ELML-A--AGVIPLLEKMISNSN--SHGAATALYLNLSFL-DDAKPIIG-SSHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 298 k-~~i~-~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~-~~~k~~I~-~~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
+ ..+. . .-++|.|+..+.... .+..+..+|..+... +..... . -...++.|+..|++. ++.++..++.+|
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k-~~~vk~~al~~l 170 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK-TPQIRMECTQLF 170 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 2 1222 1 236888888887653 345566666665432 111110 0 124678899999998 899999999999
Q ss_pred HHhccCCCCh-HHH---HHcCchHHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 370 YNLSTIPSNI-PNL---LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 370 ~nLs~~~~nk-~~i---v~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
..+....... ..+ +...++|.|.+++.+.+..+++.|..+|..++.
T Consensus 171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9988644321 222 225789999998888999999999999998875
No 139
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.55 E-value=0.0017 Score=77.73 Aligned_cols=269 Identities=13% Similarity=0.105 Sum_probs=167.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
+.++.++..+.+..++.++..|+..|..++......-.. .-...++.|+..|.+ .+..++..|+.+|..++....
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhcC
Confidence 466778888874238899999999999998543221100 012344455555544 678899999999999974322
Q ss_pred hhhHHHHhcCchHHHHHHhcCCc---HHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 296 RNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 296 ~nk~~i~~~G~i~~Lv~lL~s~~---~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
..+ -...++.|+..|.... .+..++.++..++.... + .+.. ...++.++..+.+. +++++..++.++.
T Consensus 208 ---~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~ 280 (1230)
T 1u6g_C 208 ---NIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFE 280 (1230)
T ss_dssp -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 112 2246888888885432 23345555555443211 1 2222 46889999999877 7888999999998
Q ss_pred HhccCCC--ChHHHHHcCchHHHhhccCC-------------------------------------CChHHHHHHHHHHH
Q 008437 371 NLSTIPS--NIPNLLSAGIISGLQSLAVP-------------------------------------GDPMWTEKSLAVLL 411 (565)
Q Consensus 371 nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~-------------------------------------~~~~~~e~al~~L~ 411 (565)
.++..-. .+..+ ..+++.++..+.. ....+++.|+.+|.
T Consensus 281 ~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 281 SFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 8875322 22221 2356666663321 01235677888888
Q ss_pred HHhcCcc-cHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh----------------HHHHHH--HhCCcH
Q 008437 412 NLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE----------------KCCQMV--LQEGVI 472 (565)
Q Consensus 412 nLa~~~~-~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~----------------~~~~~v--~~~G~v 472 (565)
.++.... .-..++. ..++.|+..+...++.++..|+.+|..++..-. +....+ .-..++
T Consensus 359 ~l~~~~~~~~~~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 359 AVVSTRHEMLPEFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHTTCCTTHHHHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHhchhHHHHHHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 8887432 2344443 578888888877788899999999887764210 011111 123456
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 473 PALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 473 ~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
+.+...+.+.+.++|..+..+|..+...
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 6666668888899998888888887655
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.53 E-value=9.2e-06 Score=71.38 Aligned_cols=118 Identities=15% Similarity=0.062 Sum_probs=66.7
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
..++.|+.+|.++ ++.++..|+.+|..+-. ..++.|+.++.+.++.++..|+.+|.++..
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4556666666665 56666666666554421 124666666666667777777777666542
Q ss_pred hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHH
Q 008437 424 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 424 ~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~ 495 (565)
...++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.++.+.++.++..|...|.
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1346666667766677777777777766541 123566666666666677766666553
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0016 Score=63.74 Aligned_cols=185 Identities=10% Similarity=0.043 Sum_probs=125.6
Q ss_pred HHHhcCCc--HHHHHHHHHHH-hcCCCCCchhh---cc-CCchHHHHHHh-cCCCCHHHHHHHHHHHHHhccCC---CCh
Q 008437 311 EKMISNSN--SHGAATALYLN-LSFLDDAKPII---GS-SHAVPFLVELC-KGKTEHQCKLDALHALYNLSTIP---SNI 379 (565)
Q Consensus 311 v~lL~s~~--~~~~A~aaL~n-Ls~~~~~k~~I---~~-~g~i~~Lv~lL-~~~~~~~~~~~Al~aL~nLs~~~---~nk 379 (565)
...|.+.+ .+..|+..|.. +... +...+ .. ...+..|.+.| ++. +..++..|+.+|..|+..- .-.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccccccc
Confidence 34455553 34456666666 5422 12222 22 24677888888 555 8899999999999998422 222
Q ss_pred -HHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhc-CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 008437 380 -PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS-TPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 380 -~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~-~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
..+. -+++.|++.+.+....+++.+..+|..++..-.. ..... -+.+++.|...|.+.++.+++.++.+|..++.
T Consensus 99 ~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 2222 2788999988888888989988888888873211 00000 11356678888888899999999999999886
Q ss_pred CChH---HHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 458 GNEK---CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 458 ~~~~---~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
.... .-...+...++|.|..++.+.+..+|+.|...|..+...-
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5442 1112223678999999999999999999999999876553
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.04 E-value=0.014 Score=67.72 Aligned_cols=262 Identities=14% Similarity=0.145 Sum_probs=164.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc---chhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE---ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~---~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
+..+.+.+... ... ..|+..+..++..... .-..+ .+.++.++..+.+ .+..++..|..++..+...
T Consensus 56 ~~~~~~~~~~k-~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~- 125 (986)
T 2iw3_A 56 FGELAKGIKDK-KTA--ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGN----KDKEIQSVASETLISIVNA- 125 (986)
T ss_dssp HHHHHHHHTSH-HHH--HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcc-CCH--HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHh-
Confidence 34555555432 112 7888889998854421 11112 2456666666655 4567887777666666432
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCCCCHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHAL 369 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~aL 369 (565)
-+...+ ..++|.|+..|.++.. +..|..++..|+... ...++. ...||.+-+.+.+- .+++++.|..++
T Consensus 126 -~~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~ 199 (986)
T 2iw3_A 126 -VNPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAM 199 (986)
T ss_dssp -SCGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred -CCHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHH
Confidence 122222 4568999999976643 344666666666432 455544 46788888888776 899999999999
Q ss_pred HHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHH
Q 008437 370 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 449 (565)
Q Consensus 370 ~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av 449 (565)
..+|..-+|+.. ...||.|++-+.+++. ...++..|..-....+--...+. -.+|.|.+=|...+...+..++
T Consensus 200 ~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~ 272 (986)
T 2iw3_A 200 TKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSA 272 (986)
T ss_dssp HHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeE
Confidence 999976666543 3468889984433322 34455544443333322222221 1345555556666888899999
Q ss_pred HHHHHhhc--CChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHHhhccc
Q 008437 450 SCLFLLCN--GNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 450 ~~L~~Lc~--~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
-+.-|+|+ +++..... .-...+|.|-....+ ..|++|+.|..++..|.+....
T Consensus 273 ~~~~n~~~lv~~~~~~~~-f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 273 VIIDNMCKLVEDPQVIAP-FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHTTCCCHHHHHH-HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEcchhhhcCCHHHHhh-hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999998 44432222 234667777665444 7899999999999999887554
No 143
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.99 E-value=0.014 Score=64.87 Aligned_cols=258 Identities=14% Similarity=0.134 Sum_probs=151.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
+....++.+++. +...|.-+--.+..+++.+++.- -..++.+.....+.++.++-.|+.+|.++. .++
T Consensus 75 ~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~~e~~---------~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e 142 (621)
T 2vgl_A 75 GHMEAVNLLSSN-RYTEKQIGYLFISVLVNSNSELI---------RLINNAIKNDLASRNPTFMGLALHCIANVG--SRE 142 (621)
T ss_dssp CHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCcHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHH
Confidence 556777877776 88888888888888886654322 222333333333478999999999999985 222
Q ss_pred hhHHHHhcCchHHHHHHh--cCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 297 NKELMLAAGVIPLLEKMI--SNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL--~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
++ ...++.+...| .+.+ .+..|+-++..+.... ...+...+.++.|.++|.+. ++.++.+|+.+|..+
T Consensus 143 ----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 143 ----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTL 214 (621)
T ss_dssp ----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred ----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHH
Confidence 22 24678888888 5443 3566777777665432 23333358999999999877 999999999999999
Q ss_pred ccCCCC-----hH-------HHHHcCch----------------HHHhhcc----CCCChHHHHHHHHHHHHHhc----C
Q 008437 373 STIPSN-----IP-------NLLSAGII----------------SGLQSLA----VPGDPMWTEKSLAVLLNLAA----S 416 (565)
Q Consensus 373 s~~~~n-----k~-------~iv~~G~v----------------~~Lv~Ll----~~~~~~~~e~al~~L~nLa~----~ 416 (565)
+..... .. .++..+.. -.+++++ ..+++...+....+|..+.. .
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP 294 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 864321 11 11111101 0111211 11233333332222222211 0
Q ss_pred c-------ccH------------------HHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCc
Q 008437 417 A-------AGK------------------EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 471 (565)
Q Consensus 417 ~-------~~r------------------~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 471 (565)
+ .+. ..+.. .++..|..+|.+.++.++-.|+..|..++...+. ...+ ...
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~ 369 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTH 369 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTT
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcHHHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHH
Confidence 0 000 01111 2456666777667788888888888888765431 1122 123
Q ss_pred HHHHHHhhh-cCChhHHHHHHHHHHHHHh
Q 008437 472 IPALVSISV-NGSTRGRDKAQRLLMLFRE 499 (565)
Q Consensus 472 v~~Lv~L~~-~~s~~~k~~A~~lL~~L~~ 499 (565)
...++..+. +.+..+|.+|..+|..|..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 556666666 7788888888888776653
No 144
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.99 E-value=0.00066 Score=59.26 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=74.9
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHh
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 424 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~ 424 (565)
.++.|+++|.+. ++.++..|+++|.++.. ..+++.|+.++.+.+..++..|+.+|.++..
T Consensus 43 ~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------- 102 (131)
T 1te4_A 43 AFEPLLESLSNE-DWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------- 102 (131)
T ss_dssp THHHHHHGGGCS-CHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence 479999999988 99999999999998853 2368899998888899999999999998852
Q ss_pred cCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437 425 STPGLVSGLATVLDTGELIEQEQAVSCLFL 454 (565)
Q Consensus 425 ~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~ 454 (565)
..+++.|+.+|.+.++.++..|+.+|..
T Consensus 103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 --ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2467889999988899999999988864
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.96 E-value=0.065 Score=56.80 Aligned_cols=220 Identities=12% Similarity=0.029 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcC--chHHHHHHhcC----Cc-------------H--HHHHHHHHHHhcCCCC
Q 008437 277 SYAQEIGAMALFNLAVNNNRNKELMLAAG--VIPLLEKMISN----SN-------------S--HGAATALYLNLSFLDD 335 (565)
Q Consensus 277 ~~~q~~A~~aL~nLa~~~~~nk~~i~~~G--~i~~Lv~lL~s----~~-------------~--~~~A~aaL~nLs~~~~ 335 (565)
...+..++.+|..|.. .++.|..+.+.+ .++.++.++.. .. . .-+++-+++.|+..++
T Consensus 182 ~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 3456667888888764 577888887653 37777665541 11 1 2347778888998876
Q ss_pred CchhhccCCch--HHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChH-----HHHHcCchHHHhh-ccCC--CChHHHH
Q 008437 336 AKPIIGSSHAV--PFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIP-----NLLSAGIISGLQS-LAVP--GDPMWTE 404 (565)
Q Consensus 336 ~k~~I~~~g~i--~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~-----~iv~~G~v~~Lv~-Ll~~--~~~~~~e 404 (565)
....+...+.+ +.|+.+++......+.+-++.+|.||.... ++.. .++..++ +.+++ |... .|+.+.+
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 65666555543 678888887767889999999999998754 2222 2233444 45656 4333 4555554
Q ss_pred HHHHHHHH-------HhcCcccHHHH------------------------hcC-CCCHHHHHHHhhc----------CCH
Q 008437 405 KSLAVLLN-------LAASAAGKEEM------------------------NST-PGLVSGLATVLDT----------GEL 442 (565)
Q Consensus 405 ~al~~L~n-------La~~~~~r~~i------------------------~~~-~g~v~~Lv~lL~~----------~s~ 442 (565)
..-.+... |++.++.+.++ .+. ...+..|+++|.+ .++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 33322222 22222222222 111 1357889999974 245
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 443 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 443 ~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
.+..-|+.=+..++++-++-+..+.+-|+=..++.|+.+.++.+|..|-.+++.+-
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 66667777778888877766777777898888899999999999999998887753
No 146
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.95 E-value=0.027 Score=64.73 Aligned_cols=220 Identities=11% Similarity=0.001 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHH
Q 008437 231 LGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 310 (565)
Q Consensus 231 ~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~L 310 (565)
..++..|+..|....-++. ...+++.|..+|.. .+..+.+.|+.+|.-+-.+ ..|.. ++..|
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~d----d~~~~~~~AalALGli~vG-Tgn~~------ai~~L 512 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYN----DSATSGEAAALGMGLCMLG-TGKPE------AIHDM 512 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTT-CCCHH------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcc-cCCHH------HHHHH
Confidence 3455555555555432211 12246778888865 3455556666666654322 22222 34555
Q ss_pred HHHhcCC-c--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCc
Q 008437 311 EKMISNS-N--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGI 387 (565)
Q Consensus 311 v~lL~s~-~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~ 387 (565)
+..+... + .+..++..|..+ .++....++.|+++|....++-++..++.++.--.....|.. +
T Consensus 513 L~~~~e~~~e~vrR~aalgLGll--------~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------a 578 (963)
T 4ady_A 513 FTYSQETQHGNITRGLAVGLALI--------NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------A 578 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHH--------TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------H
T ss_pred HHHHhccCcHHHHHHHHHHHHhh--------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------H
Confidence 5555332 2 223344444333 234556789999998765477788877777765555444532 4
Q ss_pred hHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHH
Q 008437 388 ISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQM 465 (565)
Q Consensus 388 v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~ 465 (565)
|+.|+. +..+.+..++..|+..|..++.... ..++.++.+| ...++.+|..|+.+|..+|..++.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---- 645 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---- 645 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence 566777 4555677788888888888766542 4566777655 457899999999999999876652
Q ss_pred HHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 008437 466 VLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 466 v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~ 498 (565)
..++..|..++.+.++.++..|...|-++-
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 123455566666667777766666665544
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.86 E-value=0.011 Score=59.78 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+..++..|.++ +.+.+..++..|+.+...+.+.-..++..+++..|+.+... .+...|..++.+|.+|-. ...
T Consensus 119 ra~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~----~~gN~q~Y~L~AL~~LM~-~v~ 192 (339)
T 3dad_A 119 RVNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA----ADHNYQSYILRALGQLML-FVD 192 (339)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT----SCHHHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh----cChHHHHHHHHHHHHHHh-ccc
Confidence 567888999887 88999999999999655777788888899999999999987 578899999999999964 444
Q ss_pred hhHHHH-hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC-Cchhhcc--------C--CchHHHHHHhc---CCCCH
Q 008437 297 NKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGS--------S--HAVPFLVELCK---GKTEH 359 (565)
Q Consensus 297 nk~~i~-~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~-~k~~I~~--------~--g~i~~Lv~lL~---~~~~~ 359 (565)
.-..++ +...|..|..++.+... ...|..+|..+....+ +...+.. . -....|+.+|. .+ +.
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~ 271 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DP 271 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CH
T ss_pred cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CH
Confidence 554555 45678888888886532 3558888888765543 3322221 1 13789999997 45 88
Q ss_pred HHHHHHHHHHHHhcc
Q 008437 360 QCKLDALHALYNLST 374 (565)
Q Consensus 360 ~~~~~Al~aL~nLs~ 374 (565)
+.+.+|+..|-.+-.
T Consensus 272 elq~~amtLIN~lL~ 286 (339)
T 3dad_A 272 ELLVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998887666543
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0016 Score=51.27 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=37.1
Q ss_pred cccccccccccCCcee-cCCCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVI-IASGQTYERICIEKWLSD-GHSTCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~-~~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~ 118 (565)
.-.|.||.+++..=+. ..|||.|=..||.+||.. +..+||.|++++.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3569999988864332 269999999999999975 2489999998765
No 149
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.25 Score=45.70 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=137.6
Q ss_pred cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcH---HHHHHHHHHHhcCCC
Q 008437 258 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD 334 (565)
Q Consensus 258 ~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~A~aaL~nLs~~~ 334 (565)
..++..++.+|.+ .--.+|.+|+..|.+++..-++....+ +..|+.+++.++. ....+.++..++..
T Consensus 31 ~~~l~~lI~~LDD----DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i- 100 (253)
T 2db0_A 31 ESVLKKLIELLDD----DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE- 100 (253)
T ss_dssp HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcc----HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh-
Confidence 3467888899876 335699999999999985433333322 4455566654432 23333444444321
Q ss_pred CCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHH
Q 008437 335 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 413 (565)
Q Consensus 335 ~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~-~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nL 413 (565)
+..+. .+.+|.|..=.+-+ +++.+.+-..+|-.+.. +++-- .+++.-+..++.+.+.. .=+.+|.-+
T Consensus 101 --~Pe~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~---Dkl~aLnFi 168 (253)
T 2db0_A 101 --KPELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNRE---DKLTALNFI 168 (253)
T ss_dssp --CHHHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHH---HHHHHHHHH
T ss_pred --CHHHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChH---HHHHHHHHH
Confidence 11111 24666676667778 99999999999988864 22222 24555667777766644 334455555
Q ss_pred hcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 414 AASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 414 a~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
..-.++.-..+. -.++.|..+|.+.+..++..|+.+|.+|+.-++..+..+. ..+.-+.+.++-++.+....
T Consensus 169 ~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 169 EAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp HTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHH
T ss_pred HHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHH
Confidence 555566666665 5899999999999999999999999999999887655432 23444556677777777777
Q ss_pred HHHHH
Q 008437 494 LMLFR 498 (565)
Q Consensus 494 L~~L~ 498 (565)
|..+.
T Consensus 241 L~rl~ 245 (253)
T 2db0_A 241 ISRLL 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 150
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.52 E-value=0.045 Score=56.30 Aligned_cols=248 Identities=13% Similarity=0.057 Sum_probs=142.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.+...++.+.+. +...|.-.--.+..+++..++.- ++ +..|.+=+.+ .++-++-.|+.+|.++.. ++
T Consensus 69 lf~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e~i--Lv----~Nsl~kDl~~----~N~~iR~lALRtL~~I~~--~~ 135 (355)
T 3tjz_B 69 AFFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAEDVI--IV----TSSLTKDMTG----KEDSYRGPAVRALCQITD--ST 135 (355)
T ss_dssp HHHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSSCGG--GG----HHHHHHHHHS----SCHHHHHHHHHHHHHHCC--TT
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHHH--HH----HHHHHhhcCC----CcHhHHHHHHHHHhcCCC--HH
Confidence 345556777776 88888888888888887644322 32 5556666655 788999999999999963 33
Q ss_pred hhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 297 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 297 nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
.-.. ..+.+...|.+.+. +..|+-+...|. +.+.+.+ .++++.+-+++.+. ++.+.-+|+.+|+.++.
T Consensus 136 m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~~pe~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 136 MLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLL--KCSFDVV--KRWVNEAQEAASSD-NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp THHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHT--TTCHHHH--HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHh--ccCHHHH--HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHh
Confidence 3222 34556667766544 455555555554 3334444 26899999999888 89999999999999987
Q ss_pred CCCChHHHHHcCchHHHhhccCCC---ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHH
Q 008437 375 IPSNIPNLLSAGIISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 451 (565)
Q Consensus 375 ~~~nk~~iv~~G~v~~Lv~Ll~~~---~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~ 451 (565)
.+ +. ++..|+.-+..+ ++-.+-..+.++..++..++.. .....+..|..+|++.++.+.-.|+.+
T Consensus 206 ~d--~~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 206 ND--RL------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp TC--HH------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHH
T ss_pred hc--hH------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 54 21 344455522222 3333333444444443322111 112455666777788899999999999
Q ss_pred HHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhcccC
Q 008437 452 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 504 (565)
Q Consensus 452 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~~ 504 (565)
+..|...+.. .. ..++..|..++.+.++.+|--|...|..+...++.-
T Consensus 274 I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 274 IVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp HTC----------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred HHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence 9887653321 11 344667777788888899988888888777554433
No 151
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.52 E-value=0.027 Score=60.39 Aligned_cols=251 Identities=11% Similarity=0.095 Sum_probs=153.8
Q ss_pred ccchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc--chhhhhccCCHHHHHHHhccc-c----c-CCCHHHHHH
Q 008437 211 GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESA-V----C-ERNSYAQEI 282 (565)
Q Consensus 211 ~~~~~e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s~-~----~-s~~~~~q~~ 282 (565)
+|.. +.+..|+..|-+. .|++|-.|+-.||.+.+.... .|..-......-.|+.+|.-. . . .--..++|.
T Consensus 170 eWPf-qfcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 170 ENVL-DFFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp CSGG-GTTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred CCHH-HHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 4444 3778888888887 999999999999999876432 121111124445555555321 1 0 112468999
Q ss_pred HHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHH
Q 008437 283 GAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQC 361 (565)
Q Consensus 283 A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~ 361 (565)
++++|..+ .+-+.. ..++..|+..+... .++...+.|..|-.. +..+.. .++++.++.-|.+. +.++
T Consensus 248 aAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DLL~~Ld~Vv~aVL~GL~D~-DDDV 315 (800)
T 3oc3_A 248 AAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEFVEDKDGLCRKLVSLLSSP-DEDI 315 (800)
T ss_dssp HHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGGCCCHHHHHHHHHHHTTCS-SHHH
T ss_pred HHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHHHHHHHHHHHHHHhhcCCc-ccHH
Confidence 99999888 553332 23444444433333 344433333332221 333332 46778888888888 8899
Q ss_pred HHHHHHHHHHhccCCCChHHHHHcCchHHHhhccC--CCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc
Q 008437 362 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV--PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT 439 (565)
Q Consensus 362 ~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~--~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~ 439 (565)
+..|+.+|.-++ .++....+ +..|-+.|. ++-.......+.+|+.|+..+. .....+..||.|...++.
T Consensus 316 RAVAAetLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChHHHHHHHhhhcC
Confidence 999999999998 22222222 222333221 1112334667788888888663 122335788889999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHH-HhhhcCChhHHHHHHHHHH
Q 008437 440 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV-SISVNGSTRGRDKAQRLLM 495 (565)
Q Consensus 440 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv-~L~~~~s~~~k~~A~~lL~ 495 (565)
.-..+|..++.+|..+. .. .++..+. .++...++.+++.+..+.+
T Consensus 387 tITSVR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SSHHHHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999998877 11 2233332 4777888888888887775
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.46 E-value=0.4 Score=55.17 Aligned_cols=168 Identities=12% Similarity=0.061 Sum_probs=112.4
Q ss_pred CHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHhcCC-cH-HHHHHHHHHHhcCCCCCc
Q 008437 260 FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-NS-HGAATALYLNLSFLDDAK 337 (565)
Q Consensus 260 ~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~-~~-~~~A~aaL~nLs~~~~~k 337 (565)
++..|+..+... .+..+++.++..|..+...++ ..++.+++.|... +. ...+++....++...
T Consensus 508 ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaG--- 572 (963)
T 4ady_A 508 AIHDMFTYSQET---QHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAG--- 572 (963)
T ss_dssp HHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---
Confidence 456677665432 456777778777777654433 3467777777542 22 233333333343321
Q ss_pred hhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcC
Q 008437 338 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 338 ~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~ 416 (565)
.+...+|..|++.+.+..+..++..|+.+|..+...++ ..++.++. |+.+.++.++..+..+|..++..
T Consensus 573 --TGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 573 --TGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp --SCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred --CCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 12234677788777655577899999999998775543 35777888 66778999999999999999875
Q ss_pred cccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 417 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 417 ~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
... . .++..|..++.+.+..++..|+.+|..+-...
T Consensus 643 n~~-~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 643 KGL-Q------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp SCC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred CCc-H------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 432 1 24556777777889999999999999887643
No 153
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.41 E-value=0.0029 Score=47.70 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=39.0
Q ss_pred cccccccccccCCceecCCCc-----ccchHHHHHHHhc-CCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQ-----TYERICIEKWLSD-GHSTCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~ 118 (565)
.-.|.||++-..+|.+.||.. -|=+.||++|+.. ++.+||+|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456999998888898888653 6889999999984 6789999998764
No 154
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.25 E-value=0.41 Score=55.45 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=143.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 296 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~ 296 (565)
.++.++..+..- ...+|..|-.++..+.+.-+..- + ..++|.|+..|.+. ..-..+..|+.+|..|+..
T Consensus 96 ~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~---~kw~~k~~~l~~~~~~~~~--- 164 (986)
T 2iw3_A 96 LVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVET---NKWQEKIAILAAFSAMVDA--- 164 (986)
T ss_dssp THHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHH---
Confidence 445666666655 67888888888888875432211 1 45688999888652 3467888899999999742
Q ss_pred hhHHHHh--cCchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 297 NKELMLA--AGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 297 nk~~i~~--~G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
....+.. ...||.+...+.... ....|..++..++..-+|+... ..||.||+.+.++ +. .-.++..|..-
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~---~~~~~~~~~~~~p-~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE---RFIPSLIQCIADP-TE--VPETVHLLGAT 238 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG---GGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh---hhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence 2455543 367888888776553 3455777777776655555544 4799999999877 32 33344444433
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC---cccHHHHhcCCCCHHHHHHHhhc-CCHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS---AAGKEEMNSTPGLVSGLATVLDT-GELIEQEQA 448 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~---~~~r~~i~~~~g~v~~Lv~lL~~-~s~~~~e~A 448 (565)
....+.-..... =.+|.|.+=|......++..++-++.|||.- +.....++ +..+|.|-+..++ .+|++++.|
T Consensus 239 tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 239 TFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp CCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred eeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence 333332222111 1455555545666788889999999999983 33444444 4678888777766 789999988
Q ss_pred HHHHHHh
Q 008437 449 VSCLFLL 455 (565)
Q Consensus 449 v~~L~~L 455 (565)
-.++..|
T Consensus 316 ~~a~~~l 322 (986)
T 2iw3_A 316 LRALKTL 322 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877766
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.14 E-value=0.05 Score=55.94 Aligned_cols=211 Identities=11% Similarity=0.046 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 218 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 218 i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
+..+.+-+.+. ++-+|..|++.|..+... ..++.+...+..+..+.++-++..|+.+...|... +
T Consensus 106 ~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~-----------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~---~ 170 (355)
T 3tjz_B 106 TSSLTKDMTGK-EDSYRGPAVRALCQITDS-----------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC---S 170 (355)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHHHHHCCT-----------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT---C
T ss_pred HHHHHhhcCCC-cHhHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc---C
Confidence 45677888887 899999999988888632 23555555555544447899999999999988643 3
Q ss_pred hHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC-C-CHHHHHHHHHHHHHhc
Q 008437 298 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-T-EHQCKLDALHALYNLS 373 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~-~-~~~~~~~Al~aL~nLs 373 (565)
...+ + +.+..+-+++.+.+. ..+|.++|..+...+ ..++..|+.-|..+ . ++-++..-++.+..++
T Consensus 171 pe~v-~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 171 FDVV-K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp HHHH-H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred HHHH-H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence 3333 2 688889999977653 456888888886543 11456666666553 1 3545554555554544
Q ss_pred cCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 008437 374 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 453 (565)
Q Consensus 374 ~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~ 453 (565)
..++. -.....++.|...+++.+..+.-.|+.+|..|...+. .... .++..|..+|.+.++.+|--|+..|.
T Consensus 241 ~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~~--~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 241 EDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KELA--PAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred cccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHHH--HHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 43210 0123455666667888889999999999988865322 1222 45667777888889999999999998
Q ss_pred HhhcCChH
Q 008437 454 LLCNGNEK 461 (565)
Q Consensus 454 ~Lc~~~~~ 461 (565)
.|....++
T Consensus 313 ~l~~~~P~ 320 (355)
T 3tjz_B 313 KVAMKHPS 320 (355)
T ss_dssp --------
T ss_pred HHHHHCcH
Confidence 88876653
No 156
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0036 Score=64.02 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=52.5
Q ss_pred cccccccccccCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 008437 72 ELRCPISLQLMYDPVI-IASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIA 133 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~t~~~l~~~~l~pn~~l~~~i~ 133 (565)
.+.|||++..|..||- ..|.|. ||...+..... .+...||+|++.+...+|+.+.-+.+++.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 4899999999999995 569987 99888877654 45788999999999999999988877764
No 157
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.02 E-value=0.0045 Score=50.98 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=38.4
Q ss_pred cccccccccCCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 74 RCPISLQLMYDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 74 ~CpI~~~~m~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
.|++|.-.+..=. ++||+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877555444 789999999999999998888999999988764
No 158
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.091 Score=51.68 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=112.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCccc--hhh-hhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc-
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEA--RVF-TGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN- 295 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~--r~~-i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~- 295 (565)
|-..|.+. +|..|.+|++.|..+....... ... +.. ...++.+-..+.+ .+..++..|+.+|..++..-.
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhh
Confidence 55788887 9999999999999887543211 111 111 2234455566655 688999999999888763211
Q ss_pred ---hhhH-HHHhcCchHHHHHH-hcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 296 ---RNKE-LMLAAGVIPLLEKM-ISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 296 ---~nk~-~i~~~G~i~~Lv~l-L~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
.... ...-..+++.|+.= |.++. .+..|..++..+....... ...++.++..+.+. ++.++..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~K-npkv~~~~l~~ 162 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKK-LPKLIAAAANC 162 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCS-CHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence 1111 11123457777654 55543 3455666665553221111 12356677778888 89999999999
Q ss_pred HHHhccCC--C--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcC
Q 008437 369 LYNLSTIP--S--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 416 (565)
Q Consensus 369 L~nLs~~~--~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~ 416 (565)
|..+...- . +-...+ ..+++.+..++.+.++.+++.|..++..|-..
T Consensus 163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 98875321 1 111111 12455566677889999999999999887663
No 159
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.79 E-value=1.2 Score=41.22 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHH-HHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYA-QEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~-q~~A~~aL~nLa~~~ 294 (565)
+.+..++..|... -|.+|.+|+..|..+++.-++...-+ +..|+.+|+.. +...+ |+. +.++..++.-+
T Consensus 32 ~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks---EaIpltqeI-a~a~G~la~i~ 101 (253)
T 2db0_A 32 SVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS---EAIPLTQEI-AKAFGQMAKEK 101 (253)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC---CSHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc---ccCchHHHH-HHHHhHHHHhC
Confidence 4566778888776 79999999999999998777655443 44556666531 34444 444 46787777543
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 372 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nL 372 (565)
++... +.+|.|..-+.-++. +.+...+|..++.. |-..+ .+++.-+..||.+. +..-+-.|+..|.
T Consensus 102 Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIara--nP~l~--~~v~rdi~smltsk-d~~Dkl~aLnFi~-- 169 (253)
T 2db0_A 102 PELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKA--NPMLM--ASIVRDFMSMLSSK-NREDKLTALNFIE-- 169 (253)
T ss_dssp HHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH--CHHHH--HHHHHHHHHHTSCS-SHHHHHHHHHHHH--
T ss_pred HHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHh--ChHHH--HHHHHHHHHHhcCC-ChHHHHHHHHHHH--
Confidence 32221 346666666666654 34555566555422 11111 24667888888877 6555555555444
Q ss_pred ccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH
Q 008437 373 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 452 (565)
Q Consensus 373 s~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L 452 (565)
.-.+|..+-+. -.+|.|+.||.+.+..++..+..+|.+|+.....-..+ |...++-+++.|..++......|
T Consensus 170 -alGen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 170 -AMGENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp -TCCTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred -HHhccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 44555555543 36889999999999999999999999999854333222 23345556777888888887777
Q ss_pred HHhhc
Q 008437 453 FLLCN 457 (565)
Q Consensus 453 ~~Lc~ 457 (565)
..|..
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.57 E-value=0.0024 Score=64.39 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=37.6
Q ss_pred cccccccccccCC----cee----cCCCcccchHHHHHHHhcCC----------CCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYD----PVI----IASGQTYERICIEKWLSDGH----------STCPKTQQKLP 118 (565)
Q Consensus 72 ~f~CpI~~~~m~d----PV~----~~~g~ty~r~~I~~~~~~~~----------~~cP~t~~~l~ 118 (565)
...|+||...+.+ |-. ..|||.|-..||.+||.... .+||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4569999999887 543 36999999999999997421 46999998875
No 161
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.43 E-value=0.012 Score=59.97 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=53.4
Q ss_pred cccccccccccCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 008437 72 ELRCPISLQLMYDPVI-IASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIAS 134 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~ 134 (565)
.+.|||++..|+.||- ..|.|. ||...+..... .+...||+|++.+...+|+.+.-+.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 4799999999999995 569987 99998887765 456889999999998899999888887753
No 162
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.23 E-value=2.7 Score=44.49 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=141.5
Q ss_pred ccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCc--hhhHHH-HhcC-chHHHHH-HhcCCcH-HHHHHHHH-HH
Q 008437 257 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN--RNKELM-LAAG-VIPLLEK-MISNSNS-HGAATALY-LN 329 (565)
Q Consensus 257 ~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~--~nk~~i-~~~G-~i~~Lv~-lL~s~~~-~~~A~aaL-~n 329 (565)
...++..++.+|... .+.++.+..+..+.-|...++ +.+..+ .+.. ....+.. ++..++. ...++..+ ..
T Consensus 75 ~~~~~~~~l~lL~~~---~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l 151 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTS---DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL 151 (480)
T ss_dssp SSTTHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence 355778899999863 456676777666666654332 023233 2222 2222222 2222222 12233333 23
Q ss_pred hcCCCCCchhhccCCchHH------HHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcC--chHHHhhccC-----
Q 008437 330 LSFLDDAKPIIGSSHAVPF------LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG--IISGLQSLAV----- 396 (565)
Q Consensus 330 Ls~~~~~k~~I~~~g~i~~------Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G--~v~~Lv~Ll~----- 396 (565)
++.. ..+ ....++. ++..|....+...+-.++.+|..|...++.|..+.+++ .++.++.++.
T Consensus 152 l~~~-~~~----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 152 LVQN-GLH----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HTST-TTC----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred Hhcc-CCc----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 3321 111 1223333 34445543234556678999999999999999988753 4666654321
Q ss_pred ----------CC--ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCH--HHHHHHhhc-CCHHHHHHHHHHHHHhhcCCh-
Q 008437 397 ----------PG--DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV--SGLATVLDT-GELIEQEQAVSCLFLLCNGNE- 460 (565)
Q Consensus 397 ----------~~--~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v--~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~- 460 (565)
.+ ...++..++-+++.|+..++....+... +.+ ..|+.+++. .-+++..-++++|.|+...+.
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 11 2456788999999999999888888764 433 566677765 468889999999999998662
Q ss_pred ---HH-HHHHHhCCcHHHHHHhhhc--CChhHHHHHHHHHHHHHhhcc
Q 008437 461 ---KC-CQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFREQRQ 502 (565)
Q Consensus 461 ---~~-~~~v~~~G~v~~Lv~L~~~--~s~~~k~~A~~lL~~L~~~r~ 502 (565)
.. .++++..++++.|-.|... .++...+--..+...|.+.-+
T Consensus 306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 22 2344455566655555554 588888888888888886644
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.70 E-value=0.12 Score=51.84 Aligned_cols=147 Identities=17% Similarity=0.129 Sum_probs=98.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--cCchHHHhhccCCCChHHHHHHHHHHHHHhcCcc---cHHH
Q 008437 348 FLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA---GKEE 422 (565)
Q Consensus 348 ~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~---~r~~ 422 (565)
.+...+.....+..+.-++++|+|+-.+...+..+.. .-+++.+..++...+..++-.++.++.|++.... ..+.
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3334444333566788899999999988887777765 2355555555555688888999999999987311 1111
Q ss_pred HhcCCCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHH
Q 008437 423 MNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLF 497 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L 497 (565)
.. .++..+..++.. .+.+..-.++.+|.+|...+.+..+.+..-|+...+-.+... ...++.++|+.+|..|
T Consensus 231 ~~---~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 231 KA---QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 11 134445555543 578888899999999998777666666666665555444443 5788999999888653
No 164
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.39 E-value=1.1 Score=43.38 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCC----CHHHHHHHHHHHHHhccCC--CChHHHHHcCchHHHhhc
Q 008437 321 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSL 394 (565)
Q Consensus 321 ~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~----~~~~~~~Al~aL~nLs~~~--~nk~~iv~~G~v~~Lv~L 394 (565)
.+|.+.|..++.+++.|..+..+...-.|.-.|.... -+-.+-.+++++..|...+ +....+.+.++||..+++
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 5588888899999999999988887766666666541 2347889999999998644 356667789999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCC-------CHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 008437 395 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPG-------LVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQMV 466 (565)
Q Consensus 395 l~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g-------~v~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 466 (565)
++.|+...+..|.-++..+-.++.|-.-+..+.. ++..+|.-+ ...+++.-.+.+++-..|+.+.. .+.++
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r-ar~aL 232 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR-AREAL 232 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH-HHHHH
Confidence 9889988889999999998888877776654432 233333322 34789999999999999998765 34443
Q ss_pred Hh-------CCcHHHHHHhhhcCChhHHHHHHHHHHHH
Q 008437 467 LQ-------EGVIPALVSISVNGSTRGRDKAQRLLMLF 497 (565)
Q Consensus 467 ~~-------~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L 497 (565)
.+ .|.+..++ .+++.+|+.-..+|.++
T Consensus 233 ~~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred HHhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 32 13333222 36777777766666554
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.23 E-value=0.3 Score=47.41 Aligned_cols=230 Identities=13% Similarity=0.121 Sum_probs=145.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhh-hccCCHHHHHHHhcccc---cCC--C--HH-HHHHHHHH
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFT-GANGFVVALLRFLESAV---CER--N--SY-AQEIGAMA 286 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~~---~s~--~--~~-~q~~A~~a 286 (565)
+.+..++..|. +++.|..|+.+|..--..-++.--.+ ...|.+..|++=+-+-. ..+ . .. -..+|+..
T Consensus 3 ~~i~qli~~L~---~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL 79 (268)
T 2fv2_A 3 EKIYQWINELS---SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL 79 (268)
T ss_dssp HHHHHHHHHTS---STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence 35566777775 44567777666655322222222222 24788877765332110 001 1 11 22555666
Q ss_pred HHHhhccCchhhHHHHhcCchHHHHHHhcCCc---H----HHHHHHHHHHhcCCCCCchhh---ccCCchHHHHHHhcCC
Q 008437 287 LFNLAVNNNRNKELMLAAGVIPLLEKMISNSN---S----HGAATALYLNLSFLDDAKPII---GSSHAVPFLVELCKGK 356 (565)
Q Consensus 287 L~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~---~----~~~A~aaL~nLs~~~~~k~~I---~~~g~i~~Lv~lL~~~ 356 (565)
|.-+| ++++.|..+.++...--|-.+|...+ . +-.+.+++..|...++ .+.| .+.+.||..++.++.|
T Consensus 80 lQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd-~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 80 LQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE-QEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC-HHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc-HHHHHHHHhhhHHHHHHHHHhhc
Confidence 67777 47899999999998888888887652 1 2337888888876644 2333 3578999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCChHHHHH--------cCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcC-
Q 008437 357 TEHQCKLDALHALYNLSTIPSNIPNLLS--------AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST- 426 (565)
Q Consensus 357 ~~~~~~~~Al~aL~nLs~~~~nk~~iv~--------~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~- 426 (565)
+.-.+.-|.-++..+-.++.....+.. ..++..++. +..+.++.+.+..+.+-..|+.++.+|+++...
T Consensus 158 -selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 158 -SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp -CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 888899999888887665543333221 234555555 667788999999999999999999999887532
Q ss_pred -----CCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 427 -----PGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 427 -----~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
+|... .++ .+++..+..-...|.|+
T Consensus 237 P~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 237 PDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp CGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred cHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 12211 122 35666666655555554
No 166
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.22 E-value=0.016 Score=48.16 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.4
Q ss_pred Cccccccccc-ccCCcee--cCCCcccchHHHHHHHh
Q 008437 71 EELRCPISLQ-LMYDPVI--IASGQTYERICIEKWLS 104 (565)
Q Consensus 71 ~~f~CpI~~~-~m~dPV~--~~~g~ty~r~~I~~~~~ 104 (565)
+++.|+||.+ .+.+||. +.|||+||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4678999996 5899998 89999999999998543
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.38 Score=47.13 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=98.7
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCC----ChHH--HHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhcCc
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS----NIPN--LLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~----nk~~--iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~~~ 417 (565)
.++.+-+.+.+. +..+...++.+|..++..-. .+.. ..-..+++.|++ .+.+....++..++.+|..++...
T Consensus 56 ~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 56 DPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp CTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence 445666777766 89999999999998874321 2222 223567888887 677788888888988888776533
Q ss_pred ccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC-ChHH--HHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437 418 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKC--CQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494 (565)
Q Consensus 418 ~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~--~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL 494 (565)
..... ++..|+..+...++.++..++..|..+... +... ....+ ..+++.|..++.+.++.+|+.|..++
T Consensus 135 ~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 135 TSITQ------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp SSSHH------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred CcHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 21111 234455566778999999999998876532 1110 11111 12445567788899999999999998
Q ss_pred HHHHhhc
Q 008437 495 MLFREQR 501 (565)
Q Consensus 495 ~~L~~~r 501 (565)
-.+-.+-
T Consensus 208 ~~ly~~~ 214 (278)
T 4ffb_C 208 VEIYKVT 214 (278)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 8776543
No 168
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.57 E-value=1 Score=45.03 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHH-HhcccccCCCHHHHHHHHHHHHHhhccCc
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIGAMALFNLAVNNN 295 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~s~~~~~q~~A~~aL~nLa~~~~ 295 (565)
.+..+.+.++ = +.+.+.-++..+|.++. ++.....+.+.+.-..++. ++..-.....+..+..++++|.|+-. +.
T Consensus 104 ~l~~l~kil~-W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~ 179 (304)
T 3ebb_A 104 QLQILWKAIN-C-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQ 179 (304)
T ss_dssp HHHHHHHHHT-S-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SH
T ss_pred HHHHHHHHHc-C-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cc
Confidence 3445555553 2 45677788888888774 4444444544332233332 22211112456678999999999964 56
Q ss_pred hhhHHHHhc--CchHHHHHHhcCCc--HHHHHHHHHHHhcCCCC-CchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 296 RNKELMLAA--GVIPLLEKMISNSN--SHGAATALYLNLSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 296 ~nk~~i~~~--G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~-~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
..+..+... .+++.+...+.+.+ .+..++.+++|++.... .+..=.....+..+..+++...+.++.-.++.||.
T Consensus 180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 677777653 24555555444333 34557778889886411 11100112245566667766558899999999999
Q ss_pred HhccCCCChHHHHHc-CchHHHhhccCC-CChHHHHHHHHHH
Q 008437 371 NLSTIPSNIPNLLSA-GIISGLQSLAVP-GDPMWTEKSLAVL 410 (565)
Q Consensus 371 nLs~~~~nk~~iv~~-G~v~~Lv~Ll~~-~~~~~~e~al~~L 410 (565)
+|...+.....+.+. |+...+-.+... ....+.+.|-.+|
T Consensus 260 tL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 260 TLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 999766555555553 444433335443 3445545444333
No 169
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.09 E-value=0.28 Score=52.83 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=107.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc-cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
..+..++..+... .|++|-.++-.|+-+ ...+.+ .++++.++.-|.+ .|..++..|+.+|..++.
T Consensus 263 ~IL~qLV~~l~~~-~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL~D----~DDDVRAVAAetLiPIA~-- 328 (800)
T 3oc3_A 263 DIIEQLVGFLDSG-DWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLLSS----PDEDIKLLSAELLCHFPI-- 328 (800)
T ss_dssp CHHHHHTTGGGCS-CHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHTTC----SSHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHhhcCCC-CeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhcCC----cccHHHHHHHHHhhhhcc--
Confidence 3445555555555 899999999999998 122222 5667777777766 688999999999999871
Q ss_pred chhhHHHHhcCchHHHHHHhcCC----cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNS----NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 370 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~----~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~ 370 (565)
.+... .++..|...|..- .+....+.+|..|...+.. +-.....+|.|...|++. -..++..++.+|.
T Consensus 329 p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~ 400 (800)
T 3oc3_A 329 TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVRTSILNMVK 400 (800)
T ss_dssp SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTT
T ss_pred hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHHHHHHHHHH
Confidence 21111 2344555555432 2234444444444333321 112247889999999998 7899999999998
Q ss_pred HhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHH
Q 008437 371 NLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLL 411 (565)
Q Consensus 371 nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~ 411 (565)
.+. ...++..+.+ ++-+.+..+.+.+..+..
T Consensus 401 tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 401 NLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 887 2235566666 666677888888887774
No 170
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.00 E-value=3.2 Score=41.84 Aligned_cols=241 Identities=14% Similarity=0.060 Sum_probs=154.6
Q ss_pred hhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHH---hc--CchHHHHHHhcCCcHHHHHHHHHHH
Q 008437 255 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML---AA--GVIPLLEKMISNSNSHGAATALYLN 329 (565)
Q Consensus 255 i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~---~~--G~i~~Lv~lL~s~~~~~~A~aaL~n 329 (565)
+...+.+..|+..|.. -+-+.+..+..+..++-......+-..+ .. .++..|+.-...++..-.+-..|..
T Consensus 74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4556788888888876 6788999998888887654333332222 11 2333333333334433444555666
Q ss_pred hcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCC-CChHHHHHc---CchHHHhhccCCCChHHHHH
Q 008437 330 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSA---GIISGLQSLAVPGDPMWTEK 405 (565)
Q Consensus 330 Ls~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~-~nk~~iv~~---G~v~~Lv~Ll~~~~~~~~e~ 405 (565)
...++.....|-.++.+..+++.++.+ +-++..+|..++..|-..+ ......+.. -.....-.|+.+++-.++..
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 666666556666677788899999988 8999999999999886543 233333332 23445555888999999999
Q ss_pred HHHHHHHHhcCcccHHHH---hcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---hHHHHHHHhC--CcHHHHHH
Q 008437 406 SLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN---EKCCQMVLQE--GVIPALVS 477 (565)
Q Consensus 406 al~~L~nLa~~~~~r~~i---~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~---~~~~~~v~~~--G~v~~Lv~ 477 (565)
++.+|..|-....+...| +..+.-+..++.+|++.+..+|-.|..+.--...++ ......+... ..+.-|-.
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~ 308 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK 308 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999988887766 455566788888899999999999998875544433 2333333322 33444444
Q ss_pred hhhcC--ChhHHHHHHHHHHHHHhh
Q 008437 478 ISVNG--STRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 478 L~~~~--s~~~k~~A~~lL~~L~~~ 500 (565)
+..+. ++.-.+-=.-+++.+...
T Consensus 309 f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 309 FQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp TTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred CCCCCcchhhHHHHHHHHHHHHHhC
Confidence 44332 233333333455555544
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.74 E-value=3.8 Score=39.06 Aligned_cols=180 Identities=19% Similarity=0.121 Sum_probs=103.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhccccc-------CCCHHHHHHHHHHHHHhh
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~-------s~~~~~q~~A~~aL~nLa 291 (565)
.+++.|.+....+.-.+-+..|+...+.++- .-..+ ..||+..|+.+|..... ..+...+...+.+|..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 3566666553333323456666665555443 22334 47889999998864321 124567788889999886
Q ss_pred ccCchhhHHHHh-cCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--C-chhh----------ccCCchHHHHHHhcC
Q 008437 292 VNNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A-KPII----------GSSHAVPFLVELCKG 355 (565)
Q Consensus 292 ~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~-k~~I----------~~~g~i~~Lv~lL~~ 355 (565)
.+......+++ .+++..|+..|.+... +..++.+|..++..++ + ...+ .+..-...+++.|++
T Consensus 83 -n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 161 (233)
T 2f31_A 83 -NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 161 (233)
T ss_dssp -SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred -CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Confidence 34444454554 5789999999887654 4456666666655433 3 2222 233466788888886
Q ss_pred CCCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChH
Q 008437 356 KTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPM 401 (565)
Q Consensus 356 ~~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~ 401 (565)
..+.+.+..++..|-.|....++ |..+...|..+.|-.+-...++.
T Consensus 162 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~ 214 (233)
T 2f31_A 162 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 214 (233)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence 53666666555555555554442 33344566666555453333443
No 172
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.59 E-value=3.2 Score=48.00 Aligned_cols=254 Identities=11% Similarity=0.114 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc------cCCCHHHHHHHHHHHHHhhccCchhhHHHHhc-
Q 008437 232 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV------CERNSYAQEIGAMALFNLAVNNNRNKELMLAA- 304 (565)
Q Consensus 232 ~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~------~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~- 304 (565)
..|..|...|..++.... .. .++.++.++.... .+.+-..++.|+.++..++.... ....-+..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~-----v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~-~~~~~~~~~ 446 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VL-----VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN-ITNAGVSST 446 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HH-----HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC-CBTTBCCCB
T ss_pred CcHHHHHHHHHHHHHHcc---hh-----HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc-cccCCcccc
Confidence 456677777877775432 11 2444444432111 12456778889999999874211 01100000
Q ss_pred ----CchHHHH----HHhcCC---cH--HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 305 ----GVIPLLE----KMISNS---NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 305 ----G~i~~Lv----~lL~s~---~~--~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
...+.++ ..|.++ .. +..|++++..++..- .+.. -...++.+++.|.+. +..++..|+.||.+
T Consensus 447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIEK 522 (960)
T ss_dssp CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHH
Confidence 2223332 334443 32 455788887776531 1111 135678888888877 89999999999999
Q ss_pred hccCCC---------ChHHHHH--cCchHHHhhccCCCC---hH--HHHHHHHHHHHHhcCc-ccHHHHhcCCCCHHHHH
Q 008437 372 LSTIPS---------NIPNLLS--AGIISGLQSLAVPGD---PM--WTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLA 434 (565)
Q Consensus 372 Ls~~~~---------nk~~iv~--~G~v~~Lv~Ll~~~~---~~--~~e~al~~L~nLa~~~-~~r~~i~~~~g~v~~Lv 434 (565)
++...+ .+..+.. ..+++.|+.++.... .. ..+.++.+|..++..- +.-..... ..++.|+
T Consensus 523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~ 600 (960)
T 1wa5_C 523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFI 600 (960)
T ss_dssp HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHH
T ss_pred HHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHH
Confidence 986421 2332321 235555555554431 01 1245555555544311 11111111 2334444
Q ss_pred HHhhc-----CCHHHHHHHHHHHHHhhcC-ChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhc
Q 008437 435 TVLDT-----GELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 435 ~lL~~-----~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r 501 (565)
.++.. .++.....++.+|..++.. +++.. .-....++|.+..++.+......+.+..++..+-+..
T Consensus 601 ~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 44432 3556677788888887775 33222 2334567788888777776677888888888877665
No 173
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=89.72 E-value=17 Score=41.89 Aligned_cols=218 Identities=9% Similarity=0.036 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhh---c-cCCHHHHHH----HhcccccCCCHHHHHHHHHHHHHhhccCchhhHHH
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTG---A-NGFVVALLR----FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 301 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~---~-~G~i~~Lv~----lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i 301 (565)
+|..+..|+..+..++........-+. . ....+.|+. .|.+.. ..++.++..|+++|..++..- ....
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~--~~~~- 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL--TKAQ- 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS--CHHH-
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC--CHHH-
Confidence 788999999999999854321111010 0 133343333 333311 127889999999999997421 2221
Q ss_pred HhcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC---------Cchhhcc--CCchHHHHHHhcCCC-C-HH--HHHH
Q 008437 302 LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD---------AKPIIGS--SHAVPFLVELCKGKT-E-HQ--CKLD 364 (565)
Q Consensus 302 ~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~---------~k~~I~~--~g~i~~Lv~lL~~~~-~-~~--~~~~ 364 (565)
-..+++.++..|.+.+. +..|+.+|.++....+ .+..+.. ...++.|+.++.... . .. ..+.
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467888888876653 5668999999876421 2344432 246667777777641 0 11 2245
Q ss_pred HHHHHHHhcc--CCCChHHHHHcCchHHHhhcc----CC-CChHHHHHHHHHHHHHhcC--cccHHHHhcCCCCHHHHHH
Q 008437 365 ALHALYNLST--IPSNIPNLLSAGIISGLQSLA----VP-GDPMWTEKSLAVLLNLAAS--AAGKEEMNSTPGLVSGLAT 435 (565)
Q Consensus 365 Al~aL~nLs~--~~~nk~~iv~~G~v~~Lv~Ll----~~-~~~~~~e~al~~L~nLa~~--~~~r~~i~~~~g~v~~Lv~ 435 (565)
++.+|..++. .++....+. .+++.|+.++ ++ .++.....++.+|..++.. ++....+.. ..++.+..
T Consensus 573 l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~ 648 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHH
Confidence 5566655542 122222211 2445555422 22 4566666677777777764 334444443 46777777
Q ss_pred HhhcCCHHHHHHHHHHHHHhh
Q 008437 436 VLDTGELIEQEQAVSCLFLLC 456 (565)
Q Consensus 436 lL~~~s~~~~e~Av~~L~~Lc 456 (565)
+|........+.+..++..+.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHH
Confidence 787655556666666655544
No 174
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.16 E-value=2.7 Score=41.07 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=111.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--Cchh
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN--NNRN 297 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~--~~~n 297 (565)
.+...|-+. +...+.+|+..|......++ ...+.. +..|++.+.-...+.+..+...++.+|..+... ..+.
T Consensus 50 ~~~~~lfs~-d~k~~~~ale~L~~~l~~~~--~~~~~~---lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHK-DFKQHLAALDSLVRLADTSP--RSLLSN---SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCS-CHHHHHHHHHHHHHHHHHCH--HHHHHT---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhhhCh--HHHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 556667666 89999999999988775433 222222 223344332111125788888888777765311 1111
Q ss_pred hHHHHhc-CchHHHHHHhcCCc--HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 008437 298 KELMLAA-GVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 374 (565)
Q Consensus 298 k~~i~~~-G~i~~Lv~lL~s~~--~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~ 374 (565)
+..-.+. -.+|.|+.-|..+. .++.+-.++..+.. ...-...++.|++-+++. +...+..++..|..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDALKSK-NARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 1111122 25788888775543 34555555554431 112234678888888888 89999999999888864
Q ss_pred CCCChHHHHHcCch---HHHhhccCCCChHHHHHHHHHHHHHhc
Q 008437 375 IPSNIPNLLSAGII---SGLQSLAVPGDPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 375 ~~~nk~~iv~~G~v---~~Lv~Ll~~~~~~~~e~al~~L~nLa~ 415 (565)
..... ...++ +.+..++.+.+..+++.|+.++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33222 23467 889999999999999999999886554
No 175
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.73 E-value=1.8 Score=44.71 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HH-HHHHHh--------
Q 008437 399 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KC-CQMVLQ-------- 468 (565)
Q Consensus 399 ~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~-~~~v~~-------- 468 (565)
+......++.+|..|.....|...++.++.+|..|+..|.+..+.++..|+.+|..+|..+. +. ...|++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 44667889999999999999999999999999999999999999999999999999998653 11 222322
Q ss_pred --CCcHHHHHHhhhc-CChhHHHHHHHHHHHHH
Q 008437 469 --EGVIPALVSISVN-GSTRGRDKAQRLLMLFR 498 (565)
Q Consensus 469 --~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~ 498 (565)
..-+..|+..+.+ .+...+..+..++..+-
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 2446667765555 34444444444444443
No 176
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.60 E-value=8.2 Score=39.73 Aligned_cols=182 Identities=19% Similarity=0.120 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhcccc-------cCCCHHHHHHHHHHHHHh
Q 008437 219 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNL 290 (565)
Q Consensus 219 ~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~-------~s~~~~~q~~A~~aL~nL 290 (565)
..++..|.+....+.-.+.+..|+...+..+- .-..++ .+|+..|+.+|..-. ...+...+...+.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45677777653333334567777776655543 223444 778999999985321 123567888889999988
Q ss_pred hccCchhhHHHHh-cCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--C-chh----------hccCCchHHHHHHhc
Q 008437 291 AVNNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A-KPI----------IGSSHAVPFLVELCK 354 (565)
Q Consensus 291 a~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~-k~~----------I~~~g~i~~Lv~lL~ 354 (565)
. .+......++. ..+|..|+..|.+... +..|.-+|..++..++ + ... .++..-...++..|+
T Consensus 148 m-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 M-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp T-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred h-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6 34444455554 5789999999987653 4456666666655432 2 211 233456788999998
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChHH
Q 008437 355 GKTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMW 402 (565)
Q Consensus 355 ~~~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~~ 402 (565)
++.+.+.+..++..|-.|....++ |..+...|..+.+-.+-...++.+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 754667666666555555554442 333445677776666533334443
No 177
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.32 E-value=17 Score=41.57 Aligned_cols=138 Identities=10% Similarity=0.066 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437 229 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 308 (565)
Q Consensus 229 ~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~ 308 (565)
.++..+..++..|..++..-.. .....++.++..|..- ..+++.++..++++|..++..-..+. ... ..+++
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~ 532 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP 532 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred CchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence 4889999999999999865332 1134566677666432 22467899999999998874211122 121 36788
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCC
Q 008437 309 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIP 376 (565)
Q Consensus 309 ~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~ 376 (565)
.|+..|..+..+..|+.++..++. +.+..+.- ...+..|..++..+ .+...+..+..++..++..-
T Consensus 533 ~l~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888775567778999988873 23333332 24455566666653 25678888889998887543
No 178
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.25 E-value=0.5 Score=45.64 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=36.9
Q ss_pred cccccccccccCCceec-CCCcccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQKLPH 119 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 119 (565)
-..|.||.++..-=+.= .||+.|-+.|+.+|+.. +...||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 34699999877643322 28999999999999975 35789999987654
No 179
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.21 E-value=6.6 Score=45.26 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccc-cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCchH
Q 008437 230 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-CERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 308 (565)
Q Consensus 230 ~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~-~s~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~ 308 (565)
+|..+..|+..|..++..-.... ...++.++.++..-. +..++.++..++++|..++..-..+...+ ..+++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 78889999999999975433211 234555655442211 11368899999999998874212222111 13566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhcCCCCCchhhcc--CCchHHHHHHhcCC-CCHHHHHHHHHHHHHhccCC--CChHHHH
Q 008437 309 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIP--SNIPNLL 383 (565)
Q Consensus 309 ~Lv~lL~s~~~~~~A~aaL~nLs~~~~~k~~I~~--~g~i~~Lv~lL~~~-~~~~~~~~Al~aL~nLs~~~--~nk~~iv 383 (565)
.|+..|+ ...+..|+.++.+++. +.+..+.- ...+..|..++.++ .+...+..+..+|..++..- +.+...+
T Consensus 550 ~l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 550 LLVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7777774 5557788999988873 23344432 35666777778764 25678888888888886532 3333332
Q ss_pred HcCchHHHhh----ccCCC--ChHHHHHHHHHHHHHhc---Ccc--------------cHHHHhcCCCCHHHHHHHhhc-
Q 008437 384 SAGIISGLQS----LAVPG--DPMWTEKSLAVLLNLAA---SAA--------------GKEEMNSTPGLVSGLATVLDT- 439 (565)
Q Consensus 384 ~~G~v~~Lv~----Ll~~~--~~~~~e~al~~L~nLa~---~~~--------------~r~~i~~~~g~v~~Lv~lL~~- 439 (565)
+ ..+++++. ++... +..........|..|+. .-. ....+.. ..++.+..++..
T Consensus 627 ~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 627 D-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMW 703 (971)
T ss_dssp H-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhc
Confidence 2 23444444 22222 23233334444444432 100 1111222 467777777754
Q ss_pred -CCHHHHHHHHHHHHHhhc
Q 008437 440 -GELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 440 -~s~~~~e~Av~~L~~Lc~ 457 (565)
.++.+.+.++.++..++.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 377899999999988764
No 180
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.98 E-value=9.5 Score=38.42 Aligned_cols=195 Identities=11% Similarity=0.012 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhc--cCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccC
Q 008437 217 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 294 (565)
Q Consensus 217 ~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~ 294 (565)
.+..|+..|..- +.+.|..+......+.+.....+...++ ..- +-++..|-.+. +++++--.+-..|+... .+
T Consensus 79 ll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gY--e~~diAl~~G~mLReci-r~ 153 (341)
T 1upk_A 79 LLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGY--ESPEIALNCGIMLRECI-RH 153 (341)
T ss_dssp HHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGG--GSTTTHHHHHHHHHHHH-TS
T ss_pred HHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhh--ccchhHhHHHHHHHHHH-Hh
Confidence 456677888877 8999999999999998766544432221 111 22333332222 12333333334455555 35
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcH--HHHHHHHHHHh-cCCCCCc-hhhcc--CCchHHHHHHhcCCCCHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNL-SFLDDAK-PIIGS--SHAVPFLVELCKGKTEHQCKLDALHA 368 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~A~aaL~nL-s~~~~~k-~~I~~--~g~i~~Lv~lL~~~~~~~~~~~Al~a 368 (565)
+...+.|...+.+..+...+..+.- ...|.+++..| ..+.... .-+.. ...+...-+||.++ +.-++..++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHH
Confidence 6677777788888889998887754 34477777664 3332111 11111 23567777899999 99999999999
Q ss_pred HHHhccCCCChHHHHH----cCchHHHhhccCCCChHHHHHHHHHHHHHhcCc
Q 008437 369 LYNLSTIPSNIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 417 (565)
Q Consensus 369 L~nLs~~~~nk~~iv~----~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~ 417 (565)
|..|-.+..|...+.. ..-+..++.||++....++-.|..+......++
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 9999999988887765 356677777999999999999999998877654
No 181
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.85 E-value=16 Score=37.50 Aligned_cols=182 Identities=19% Similarity=0.130 Sum_probs=105.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCcc-chhhhhccCCHHHHHHHhccccc-------CCCHHHHHHHHHHHHHhh
Q 008437 220 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 220 ~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~-------s~~~~~q~~A~~aL~nLa 291 (565)
.+|+.|.+....+.-.+.+..|+...+.++- .-..|. .+|+..|+.+|..... ..+...+...+.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 4567776652332223456666665555443 222333 6788899988864211 124567788889999886
Q ss_pred ccCchhhHHHH-hcCchHHHHHHhcCCcH--HHHHHHHHHHhcCCCC--C-chhh----------ccCCchHHHHHHhcC
Q 008437 292 VNNNRNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A-KPII----------GSSHAVPFLVELCKG 355 (565)
Q Consensus 292 ~~~~~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~A~aaL~nLs~~~~--~-k~~I----------~~~g~i~~Lv~lL~~ 355 (565)
.+......++ ..+++..|+..|.+... +..++.+|..++..++ + ...+ .+..-...||+.|+.
T Consensus 87 -N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 -NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp -SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred -CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 3343444444 45789999999987644 3446656665655433 3 2111 233466789998886
Q ss_pred CCCHHHHHHHHHHHHHhccCCCC-------hHHHHHcCchHHHhhccCCCChHHH
Q 008437 356 KTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMWT 403 (565)
Q Consensus 356 ~~~~~~~~~Al~aL~nLs~~~~n-------k~~iv~~G~v~~Lv~Ll~~~~~~~~ 403 (565)
..+.+.+..++..|-.|....++ |..+...|..+.|-.+-...++.+.
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 54666666555555555554442 3344556766666555444455443
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=84.85 E-value=3.9 Score=43.17 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHh
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 437 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL 437 (565)
+...++-|+..|...-.+-... +.-++..+++|..+.+..++..|+..|-.+|.. +....+ +..|+++|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki------aDvL~QlL 109 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV------ADILTQLL 109 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH------HHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH------HHHHHHHH
Confidence 5666666666666554322211 122455677777777777777888888888876 444443 34577788
Q ss_pred hcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHH
Q 008437 438 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 494 (565)
Q Consensus 438 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL 494 (565)
.+.++......-.+|..|-..++. |.+..|..-+.++++.+|+++..-|
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 777777777666677666665542 3344444444445666676654444
No 183
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=83.74 E-value=1.2 Score=43.09 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 431 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 431 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
+.|..++.+.+..+++.++..| | .+.|..| .+.+..+++.|...
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHH
Confidence 3455555555666666555543 2 4566667 78888888887654
No 184
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=82.87 E-value=16 Score=35.57 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=75.1
Q ss_pred CchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHH
Q 008437 344 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 423 (565)
Q Consensus 344 g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i 423 (565)
-.+|.|+.-|.+. ...+++.+-.+|..|+.. .--..+++.+++-+++.+...++.++..|..+-..... .
T Consensus 132 ~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~-~-- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI-S-- 201 (266)
T ss_dssp HHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS-G--
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC-C--
Confidence 4679999888777 677888777777666531 01123556666755777889999999998888663322 1
Q ss_pred hcCCCCH---HHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 424 NSTPGLV---SGLATVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 424 ~~~~g~v---~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
. ..++ +.+.+++.+.+..+++.|+.++..+...
T Consensus 202 -~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 -P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp -G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred -c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1 2578 9999999999999999999999876653
No 185
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=81.79 E-value=1.3 Score=42.35 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437 400 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 400 ~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
......++.+|..|.....|...++.++.++..|+..|.+..+.++..|+.+|..+|..+.
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 4556789999999999999999999999999999999998999999999999999998653
No 186
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=80.01 E-value=15 Score=37.16 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=78.6
Q ss_pred HHHHhhccCchhhHHHHhcCchHHHHHHhcCCcHHHH--HHHHHHHhcCCCCCchhh-c-cCCchHHHHHHhcCCCCHHH
Q 008437 286 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSFLDDAKPII-G-SSHAVPFLVELCKGKTEHQC 361 (565)
Q Consensus 286 aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~--A~aaL~nLs~~~~~k~~I-~-~~g~i~~Lv~lL~~~~~~~~ 361 (565)
-|+||-.++...-.-+++.+++..+..++.-+++... ....|+..|. .|..- . -...+|.++..++-..+.++
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD---aksL~~t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD---AKALAKTPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT---CGGGGTSCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc---hHHHhhccccccchHHHHHhccCCCcce
Confidence 3777777665556778999999999999987765432 3444544443 23322 2 24788999998874337888
Q ss_pred HHHHHHHHHHhccCC-CChHHHHHcCchHHHhh-ccCC
Q 008437 362 KLDALHALYNLSTIP-SNIPNLLSAGIISGLQS-LAVP 397 (565)
Q Consensus 362 ~~~Al~aL~nLs~~~-~nk~~iv~~G~v~~Lv~-Ll~~ 397 (565)
.-...+.|.|...+. ..|..++..|+|+.|-. +.+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 888999999998766 57888899999999988 5543
No 187
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=77.85 E-value=3 Score=34.03 Aligned_cols=55 Identities=18% Similarity=0.459 Sum_probs=42.5
Q ss_pred CCCCCCCcccccccccccCCceecC-CC-----cccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 65 QMPLPPEELRCPISLQLMYDPVIIA-SG-----QTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 65 ~~~~~p~~f~CpI~~~~m~dPV~~~-~g-----~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
+..=+++.+.||||+++-..=|.+. ++ .-||..++.+...+|.+ =|.++++++..
T Consensus 20 ~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~s 80 (102)
T 2kkx_A 20 RLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITAS 80 (102)
T ss_dssp TTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTT
T ss_pred hccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHh
Confidence 3444568899999999999999764 33 23999999999988654 58898888754
No 188
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.55 E-value=5.6 Score=42.02 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=67.6
Q ss_pred CCchHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437 343 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 343 ~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
..+|..+++|.++. +..++..|++.|-.+|.+ ++..++ +..|++||..++..-...+-.+|..|-..+.
T Consensus 64 ~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp---- 132 (507)
T 3u0r_A 64 DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPRV-----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA---- 132 (507)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh----
Confidence 35788999999988 999999999999999988 665555 4568888877665544444444444433211
Q ss_pred HhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008437 423 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 454 (565)
Q Consensus 423 i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~ 454 (565)
.+.+..|..-+..+++.++|.++..|..
T Consensus 133 ----k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 133 ----KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp ----HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 1344555555666788888988888754
No 189
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.48 E-value=89 Score=36.13 Aligned_cols=223 Identities=10% Similarity=0.003 Sum_probs=125.5
Q ss_pred hHHHHHH-HHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc-
Q 008437 216 ERYQDFL-NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN- 293 (565)
Q Consensus 216 e~i~~ll-~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~- 293 (565)
+.+...| ..+....+.+.|.+|-..|..+-+ ++ ++......+|.... ..+..++--|+.+|.+....
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~-~~~~~vr~fa~~~L~~~I~~l 74 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKT-KYKPSTRLICLQTLSEKVREW 74 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHhC
Confidence 3455555 344443478889899888888753 23 34556667776521 12688898898888875421
Q ss_pred Cch----hhHHHHhcCchHHHHHHh--cCCc-HHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCH-HHHHH
Q 008437 294 NNR----NKELMLAAGVIPLLEKMI--SNSN-SHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEH-QCKLD 364 (565)
Q Consensus 294 ~~~----nk~~i~~~G~i~~Lv~lL--~s~~-~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~-~~~~~ 364 (565)
.++ .+..+ ..-.+..+...- ..+. .+...+.++..+...+ .-.. ...++.|+.++..+ +. .+...
T Consensus 75 ~~e~~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~----~p~~Wp~~i~~l~~~~~~~-~~~~~~~~ 148 (980)
T 3ibv_A 75 NNESNLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL----YPSNWNDFFASLQGVIAAS-SQSEFSNF 148 (980)
T ss_dssp CTTTSHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH----TTTTCTTHHHHHHHHHHHH-CCHHHHHH
T ss_pred ChhhhHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh----CcccCchHHHHHHHHhcCC-ChhHHHHH
Confidence 222 23222 333344444311 0112 2333444444443221 0012 46888999998875 33 45566
Q ss_pred HHHHHHHhcc---CCC--------C-----hHHHHHc---CchHHHhhccC----CCChHHHHHHHHHHHHHhcCcccHH
Q 008437 365 ALHALYNLST---IPS--------N-----IPNLLSA---GIISGLQSLAV----PGDPMWTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 365 Al~aL~nLs~---~~~--------n-----k~~iv~~---G~v~~Lv~Ll~----~~~~~~~e~al~~L~nLa~~~~~r~ 421 (565)
.+++|..|+. +.. . +..+.+. -+++..+.++. ..+..+...++.+|...... -.-.
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w-i~~~ 227 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW-ININ 227 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCHH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh-cCHH
Confidence 6777775542 111 1 1112211 01333333332 25677788889888888774 3345
Q ss_pred HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
.++.+ ..++.|.++|. ++..++.|+.+|..|....
T Consensus 228 ~i~~~-~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 228 LIVNE-PCMNLLYSFLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHCH-HHHHHHHHHTT--SHHHHHHHHHHHHHHHHSC
T ss_pred hhhcc-hHHHHHHHHcC--ChHHHHHHHHHHHHHHHcC
Confidence 55553 77888887775 4889999999999988755
No 190
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=77.25 E-value=10 Score=43.61 Aligned_cols=211 Identities=12% Similarity=0.032 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHh---c-C-Cc--HHHHHHHHHHHhcCC-CCCchhhccCCch
Q 008437 275 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMI---S-N-SN--SHGAATALYLNLSFL-DDAKPIIGSSHAV 346 (565)
Q Consensus 275 ~~~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL---~-s-~~--~~~~A~aaL~nLs~~-~~~k~~I~~~g~i 346 (565)
.+-...+.|+.+|..++..-.... ...++.++.++ . . ++ .+..++.++..++.. ......+ ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 355678889999988874322111 13344444444 2 1 12 245577777766532 1111111 2456
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHH--cCchHHHhhccCC--CChHHHHHHHHHHHHHhcC--cccH
Q 008437 347 PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVP--GDPMWTEKSLAVLLNLAAS--AAGK 420 (565)
Q Consensus 347 ~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~--~G~v~~Lv~Ll~~--~~~~~~e~al~~L~nLa~~--~~~r 420 (565)
+.|+..|. +.++..|+.+|.+|+.. .+..+.- ..++..|..++.. -+...+..++.++..++.. ++..
T Consensus 549 ~~l~~~l~----~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 549 NLLVRGLN----SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHHH----SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHhC----hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 77777673 45789999999999943 2333332 3455556665544 3466777788888777653 2444
Q ss_pred HHHhcCCCCHHHHHHHhh----cC--CHHHHHHHHHHHHHhhcC-----Ch--HHH------H--HHHhCCcHHHHHHhh
Q 008437 421 EEMNSTPGLVSGLATVLD----TG--ELIEQEQAVSCLFLLCNG-----NE--KCC------Q--MVLQEGVIPALVSIS 479 (565)
Q Consensus 421 ~~i~~~~g~v~~Lv~lL~----~~--s~~~~e~Av~~L~~Lc~~-----~~--~~~------~--~v~~~G~v~~Lv~L~ 479 (565)
..... ..+..++..+. .. ++..+...+..|..|+.- +. ... . .-....+++.+..++
T Consensus 623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 700 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA 700 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHH
Confidence 44333 34444554433 22 343445555555444321 00 000 0 011234666666655
Q ss_pred hc--CChhHHHHHHHHHHHHHhh
Q 008437 480 VN--GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 480 ~~--~s~~~k~~A~~lL~~L~~~ 500 (565)
.. .++.+.+.|..+++.+...
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHh
Confidence 43 3678899999999886544
No 191
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=75.17 E-value=9.9 Score=39.15 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh
Q 008437 400 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 400 ~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
......++.+|..|.....|...++.++.++..|+..|.+..+.++..++.+|..+|..+.
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~ 132 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 132 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCC
Confidence 4566789999999999999999999999999999999998899999999999999998654
No 192
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.02 E-value=6.6 Score=31.35 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred ccccccccc-----cCCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQL-----MYDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~-----m~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
-.|.||++= =-+|.+. .|+-..||.|.+-=..+|+..||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 469999853 1234444 488899999999888899999999998875
No 193
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=71.49 E-value=97 Score=36.03 Aligned_cols=217 Identities=12% Similarity=0.056 Sum_probs=129.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-- 293 (565)
+.+..++..+.++ +.+.|.+|-..|..+-+ ++ +++..+..+|... .++.++.-|+.+|.+....
T Consensus 16 ~~Le~av~~ly~p-~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s---~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 16 ALLDQVVSTFYQG-SGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFS---TNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHC---CCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhh
Confidence 5677888888777 55678888888877653 33 3344445556432 5788999999999886431
Q ss_pred ---CchhhHHHHhcCchHHHHHHhcCCc------H-HHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHH
Q 008437 294 ---NNRNKELMLAAGVIPLLEKMISNSN------S-HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCK 362 (565)
Q Consensus 294 ---~~~nk~~i~~~G~i~~Lv~lL~s~~------~-~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~ 362 (565)
.++.+. .+....+..+.....++. . +...+.++..++..+-- .. ...++.|+.++.++ +...
T Consensus 82 ~~L~~e~~~-~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~~--~~~~ 154 (1023)
T 4hat_C 82 KLLPNDHRI-GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSSS--VNVC 154 (1023)
T ss_dssp GGSCHHHHH-HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTTC--HHHH
T ss_pred hcCCHHHHH-HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcCC--HHHH
Confidence 122222 233344555554433221 1 11233334334322100 11 57889999999754 5567
Q ss_pred HHHHHHHHHhccC------CC---ChHHHH-----H--cCchHHHhhcc-CCCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437 363 LDALHALYNLSTI------PS---NIPNLL-----S--AGIISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNS 425 (565)
Q Consensus 363 ~~Al~aL~nLs~~------~~---nk~~iv-----~--~G~v~~Lv~Ll-~~~~~~~~e~al~~L~nLa~~~~~r~~i~~ 425 (565)
...+.+|..|+.. .+ .|..-+ + ..++..+..++ ...+..+...++.+|......- .-..++.
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI-~i~~i~~ 233 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI-PYRYIYE 233 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS-CTHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-CHHHhcc
Confidence 7788888777531 11 122211 1 12333333333 2346677788999998887743 3445555
Q ss_pred CCCCHHHHH-HHhhcCCHHHHHHHHHHHHHhhc
Q 008437 426 TPGLVSGLA-TVLDTGELIEQEQAVSCLFLLCN 457 (565)
Q Consensus 426 ~~g~v~~Lv-~lL~~~s~~~~e~Av~~L~~Lc~ 457 (565)
. ..++.+. .+|. ++..++.|+.+|..+..
T Consensus 234 ~-~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 234 T-NILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp S-SHHHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred h-hHHHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 4 7888888 7774 67899999999999886
No 194
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=69.61 E-value=86 Score=36.31 Aligned_cols=219 Identities=12% Similarity=0.032 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-- 293 (565)
+.+..++..+.++ +...|.+|-..|..+-+ ++ +++..+..+|.+. .+..++..|+.+|.|....
T Consensus 16 ~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s---~~~~vr~~aa~~Lk~~i~~~W 81 (1049)
T 3m1i_C 16 ALLDQVVSTFYQG-SGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFS---TNPQSKFIALSILDKLITRKW 81 (1049)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHC---SCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHhhC
Confidence 4566777666666 66778888888887753 32 3445566666542 5788999999999987532
Q ss_pred ---CchhhHHHHhcCchHHHHHHhcCC------c-HHHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHH
Q 008437 294 ---NNRNKELMLAAGVIPLLEKMISNS------N-SHGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCK 362 (565)
Q Consensus 294 ---~~~nk~~i~~~G~i~~Lv~lL~s~------~-~~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~ 362 (565)
.++.|..|. ...+..+...-..+ . .+...+.++..++..+- -.. .+.++.|+.++. . +...+
T Consensus 82 ~~l~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~----p~~Wp~ll~~L~~~~~-~-~~~~~ 154 (1049)
T 3m1i_C 82 KLLPNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW----PQNWPEFIPELIGSSS-S-SVNVC 154 (1049)
T ss_dssp GGSCHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHT----TTTCTTHHHHHHHHHT-T-CHHHH
T ss_pred ccCCHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhC----cccchHHHHHHHHHHc-c-ChHHH
Confidence 122233332 22333333322111 1 12223334444433210 011 478899999997 4 56667
Q ss_pred HHHHHHHHHhccC-----CC----Ch-----HHHHHc--CchHHHhhccC-CCChHHHHHHHHHHHHHhcCcccHHHHhc
Q 008437 363 LDALHALYNLSTI-----PS----NI-----PNLLSA--GIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNS 425 (565)
Q Consensus 363 ~~Al~aL~nLs~~-----~~----nk-----~~iv~~--G~v~~Lv~Ll~-~~~~~~~e~al~~L~nLa~~~~~r~~i~~ 425 (565)
+.++.+|..|+.. .+ .+ ..+.+. .++..+..++. ..+..+...++.++......-.. ..+..
T Consensus 155 ~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~ 233 (1049)
T 3m1i_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYE 233 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHS
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhh
Confidence 8888888888721 11 11 112221 12222333332 24567788889888877664332 23444
Q ss_pred CCCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 426 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 426 ~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
. ..+..+.+.+. .++..++.|+.+|..+...
T Consensus 234 ~-~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 234 T-NILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp S-SHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred h-hHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 3 56666663322 3788899999999888764
No 195
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=68.29 E-value=1.2 Score=29.17 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=12.0
Q ss_pred cccccccccccCCce
Q 008437 72 ELRCPISLQLMYDPV 86 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV 86 (565)
-|+||||+.-+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 489999998877763
No 196
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=66.49 E-value=1.6 Score=27.20 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.3
Q ss_pred CCcccccccccccCCc
Q 008437 70 PEELRCPISLQLMYDP 85 (565)
Q Consensus 70 p~~f~CpI~~~~m~dP 85 (565)
|..|.||+|+..|-||
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4578999999988887
No 197
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=65.61 E-value=13 Score=33.43 Aligned_cols=72 Identities=4% Similarity=-0.001 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|.+. ++.+|..|+..|-.+.+.. ...+..++...++..|+.++... .++.+++.++..|...+
T Consensus 52 eA~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~---~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK---AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHH
Confidence 4567788889887 9999999999999999874 55777888889999999998642 56789988888777665
No 198
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.25 E-value=16 Score=33.10 Aligned_cols=76 Identities=7% Similarity=0.023 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccc--cCCCHHHHHHHHHHHHHhhc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~--~s~~~~~q~~A~~aL~nLa~ 292 (565)
+.+..+.+.|.+. ++.+|..|+..|-.+.+.. ...+..++...++..|+.++.... ...+..+++.++..|...+.
T Consensus 50 ~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567788999987 9999999999999999874 567888899999999999996321 12467899999888887653
No 199
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=62.13 E-value=88 Score=36.60 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=127.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-- 293 (565)
+.+..++..+-++ +.+.|.+|-..|..+- .++ +++..+..+|... .++.++--|+.+|.+....
T Consensus 28 ~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q-~sp---------~aw~~~~~iL~~s---~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 28 NLLDNVVNCLYHG-EGAQQRMAQEVLTHLK-EHP---------DAWTRVDTILEFS---QNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HHHHHHHHTTTCS-SHHHHHHHHHHHHTSS-CCS---------CHHHHHTCC---C---CSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHH-cCc---------hHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhh
Confidence 5677888888777 7777888888886654 333 3445555566442 5788999999999887532
Q ss_pred ---CchhhHHHHhcCchHHHHHHhcCC------c-HHHHHHHHHHHhcCCCCCchhhc-c-CCchHHHHHHhcCCCCHHH
Q 008437 294 ---NNRNKELMLAAGVIPLLEKMISNS------N-SHGAATALYLNLSFLDDAKPIIG-S-SHAVPFLVELCKGKTEHQC 361 (565)
Q Consensus 294 ---~~~nk~~i~~~G~i~~Lv~lL~s~------~-~~~~A~aaL~nLs~~~~~k~~I~-~-~g~i~~Lv~lL~~~~~~~~ 361 (565)
.++.+.. +....+..+...-.++ . .....+.++..++..+ .. . ...++.|+.++..+ +..
T Consensus 94 ~~L~~e~~~~-LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~-----~P~~Wp~fi~dLv~~~~~~--~~~ 165 (1073)
T 3gjx_A 94 KILPRNQCEG-IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE-----WPKHWPTFISDIVGASRTS--ESL 165 (1073)
T ss_dssp GGSCHHHHHH-HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH-----TTTTCTTHHHHHHHHHHHC--HHH
T ss_pred hhCCHHHHHH-HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHh-----ChhhccHHHHHHHHHhCCC--HHH
Confidence 1222222 2333455555443322 1 1222333343343211 11 1 46788888888654 566
Q ss_pred HHHHHHHHHHhccC--CC-------ChH-----HHHHcCchHHHhhc----c-CCCChHHHHHHHHHHHHHhcCcccHHH
Q 008437 362 KLDALHALYNLSTI--PS-------NIP-----NLLSAGIISGLQSL----A-VPGDPMWTEKSLAVLLNLAASAAGKEE 422 (565)
Q Consensus 362 ~~~Al~aL~nLs~~--~~-------nk~-----~iv~~G~v~~Lv~L----l-~~~~~~~~e~al~~L~nLa~~~~~r~~ 422 (565)
....+.+|..|+.. +- .|. .+.+ -++.++.+ + ...+..+...++.+|..+...- .-..
T Consensus 166 ~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI-~i~~ 242 (1073)
T 3gjx_A 166 CQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI-PLGY 242 (1073)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc-CHHH
Confidence 77888888888743 11 111 1222 24444442 3 3356777888999999998864 3345
Q ss_pred HhcCCCCHHHHH-HHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 423 MNSTPGLVSGLA-TVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 423 i~~~~g~v~~Lv-~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
++++ ..+..|+ .+| .++..++.|+.+|..|...
T Consensus 243 i~~~-~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 243 IFET-KLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHSS-SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred hccc-hHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 6664 6777664 444 4788999999999998865
No 200
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.91 E-value=20 Score=31.57 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccc--cCCCHHHHHHHHHHHHHhhc
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLAV 292 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~--~s~~~~~q~~A~~aL~nLa~ 292 (565)
+.+..+.+.|.+. ++.++..|+..|-.+.+.. ......++...++..|++++.... ...+..+++..+..|...+.
T Consensus 38 ~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567788899887 9999999999999999874 567888889999999999987421 12467899998888877653
No 201
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=60.21 E-value=2.3e+02 Score=32.06 Aligned_cols=221 Identities=14% Similarity=0.051 Sum_probs=118.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 293 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-- 293 (565)
+.+..++..|....+.+.|.+|-..|..+-+ + .+++..+..+|.+ +.+..++..|+.+|.|....
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~---------p~~~~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w 90 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQV-S---------PQAWHFSWQLLQP---DKVPEIQYFGASALHIKISRYW 90 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-S---------TTHHHHHHHHTST---TSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C---------HHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHhCH
Confidence 4456666664433388889899888888753 2 3566677788864 25788999999999987532
Q ss_pred ---CchhhHHHHhcCchHHHHHHhcCCc-HHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcC-----CCCHHHHHH
Q 008437 294 ---NNRNKELMLAAGVIPLLEKMISNSN-SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-----KTEHQCKLD 364 (565)
Q Consensus 294 ---~~~nk~~i~~~G~i~~Lv~lL~s~~-~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~-----~~~~~~~~~ 364 (565)
.++.+..+. ...+..+...-..+. .+...+.++..++..+--.. =.+.++.|+.++.+ . ++.....
T Consensus 91 ~~l~~~~~~~ir-~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~---Wp~~l~~l~~~~~~~~~~~~-~~~~~~~ 165 (963)
T 2x19_B 91 SDIPTDQYESLK-AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA---WPCAVADMVRLFQAEDSPVD-GQGRCLA 165 (963)
T ss_dssp GGSCGGGHHHHH-HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT---STTHHHHHHHHHCC-------CHHHHHH
T ss_pred HhCCHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHhhhccCCC-cHHHHHH
Confidence 122233332 223444433211122 23334444544443311000 14788999999976 2 4567788
Q ss_pred HHHHHHHhccC---C---CChHHHHH---cCchHHHhh----ccCCC-C-hHHHHHHHHHHHHHhcCcccHHHHhcCCCC
Q 008437 365 ALHALYNLSTI---P---SNIPNLLS---AGIISGLQS----LAVPG-D-PMWTEKSLAVLLNLAASAAGKEEMNSTPGL 429 (565)
Q Consensus 365 Al~aL~nLs~~---~---~nk~~iv~---~G~v~~Lv~----Ll~~~-~-~~~~e~al~~L~nLa~~~~~r~~i~~~~g~ 429 (565)
++.+|..|+.. . ..+...++ ...++.++. ++... + ..+...++.++......... +......
T Consensus 166 ~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~---~~~~~~l 242 (963)
T 2x19_B 166 LLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP---LQDCEAL 242 (963)
T ss_dssp HHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC---GGGTHHH
T ss_pred HHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC---cccchHH
Confidence 88888888731 1 11111111 122333333 33332 2 23566677666543331111 0011134
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 430 VSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 430 v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
++.+.+.+ .++..++.|+.+|..+....
T Consensus 243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 243 IQAAFAAL--QDSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp HHHHHHHT--TSTTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHHccc
Confidence 44455555 36778899999999888743
No 202
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=58.44 E-value=1.1e+02 Score=35.83 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=70.5
Q ss_pred chHHHHHHhcCCcH-HHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCC---CCHHHHHHHHHHHHHh----ccCCC
Q 008437 306 VIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---TEHQCKLDALHALYNL----STIPS 377 (565)
Q Consensus 306 ~i~~Lv~lL~s~~~-~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~---~~~~~~~~Al~aL~nL----s~~~~ 377 (565)
++..+.+.+.++.. ...|+.+|..+..... -....+..+..++.++ .++.+++.|+-++.+| |.+..
T Consensus 357 a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~-----Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ-----ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 46666777766532 2223333332211100 1223556677777653 2455666666666555 44433
Q ss_pred ChHHHHHcCchHHHhh----ccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhhc-------CCHHHHH
Q 008437 378 NIPNLLSAGIISGLQS----LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-------GELIEQE 446 (565)
Q Consensus 378 nk~~iv~~G~v~~Lv~----Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~~-------~s~~~~e 446 (565)
.+. ...|+.+.+ .+..++..-+..++.+|.|+.. +..++.|..+|.. ....++-
T Consensus 432 ~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 432 SCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp SCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred CCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHH
Confidence 221 123444444 2344566667788899999865 2345555555531 1345666
Q ss_pred HHHHHHHHhhcCC
Q 008437 447 QAVSCLFLLCNGN 459 (565)
Q Consensus 447 ~Av~~L~~Lc~~~ 459 (565)
.|+.+|..+....
T Consensus 497 aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 497 EAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHTTTTGGGTC
T ss_pred HHHHHHHHhhhhc
Confidence 6777777776544
No 203
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.47 E-value=26 Score=30.45 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=54.9
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|...++.++-.|+.+|-.+..+. ......+.....+..|+.+....++.++++...++......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999887776654 34455555556777777777778899999999998887754
No 204
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.47 E-value=23 Score=30.82 Aligned_cols=71 Identities=6% Similarity=0.027 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|.+. ++.+|..|+..|..+.+.. ......++...++..|+.++.. .++.+++..+..|...+
T Consensus 42 ~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~----~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK----GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHH
Confidence 4567788889987 9999999999999998765 3466678888899999998864 57889988888887765
No 205
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=55.25 E-value=18 Score=42.25 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhccCCCCh-HHHHHcCchHHHhhccCC-----CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHH
Q 008437 358 EHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVP-----GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVS 431 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk-~~iv~~G~v~~Lv~Ll~~-----~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~ 431 (565)
+-..+++++.|+..++...... ..-.=..+++.|+.++.. ....++..++.+|...+..-......+. .++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHH
Confidence 6788999999999998654321 111112366677776542 1122334555666665553222222322 3445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 432 GLATVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 432 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
.|++.|....+.+++.|+.+|.+||..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 555555556789999999999999963
No 206
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.98 E-value=27 Score=31.18 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=54.8
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|...++.++-.|+.+|-.+..+. ......+.....+..|+.+... ..+.+|+++..+|..-...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4566788888899999999999998877654 4456666666777778776654 5689999988888876654
No 207
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=53.02 E-value=1.9e+02 Score=34.24 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhcc--
Q 008437 217 RYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-- 293 (565)
Q Consensus 217 ~i~~ll~~L~s~-~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~-- 293 (565)
.+..++..+.+. .+.+.|.+|-..|..+-+.. .+...+...|.+ .+.+..++..|+.+|.|....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~--~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAE--KTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555444443 36677888888888875322 234444444432 225788999999999987432
Q ss_pred ---CchhhHHHHhcCchHHHHHHhc----CCcH-HHHHHHHHHHhcCCCCCchhhcc-CCchHHHHHHhcCCCCHHHHHH
Q 008437 294 ---NNRNKELMLAAGVIPLLEKMIS----NSNS-HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLD 364 (565)
Q Consensus 294 ---~~~nk~~i~~~G~i~~Lv~lL~----s~~~-~~~A~aaL~nLs~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~~~~~ 364 (565)
.++.|..|. ...+..+..... .+.. +...+.++..++..+-- .. ...++.|+.++.++ ....+.
T Consensus 80 ~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~~--~~~~e~ 152 (1204)
T 3a6p_A 80 NGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQG--ETQTEL 152 (1204)
T ss_dssp GGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHTC--HHHHHH
T ss_pred ccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcCC--HHHHHH
Confidence 222333332 223333332211 1111 22344444444432110 11 57889999999764 556788
Q ss_pred HHHHHHHhccC---CC----ChHH-----HHHc--CchHHHhhccCC-------------------CChHHHHHHHHHHH
Q 008437 365 ALHALYNLSTI---PS----NIPN-----LLSA--GIISGLQSLAVP-------------------GDPMWTEKSLAVLL 411 (565)
Q Consensus 365 Al~aL~nLs~~---~~----nk~~-----iv~~--G~v~~Lv~Ll~~-------------------~~~~~~e~al~~L~ 411 (565)
++.+|..|+.. .+ .|.. +.+. .++..+..++.+ .+..+...++.+|.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 99999888632 11 1111 1111 122222332221 11234455566655
Q ss_pred HHhcCcccHHHHhcCC-CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 008437 412 NLAASAAGKEEMNSTP-GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 459 (565)
Q Consensus 412 nLa~~~~~r~~i~~~~-g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 459 (565)
+.... ..-..+.+.. ..+..+..++. ++..+..|+.+|..|+...
T Consensus 233 ~~l~W-i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 233 GYIDW-VSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTT-SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHhc-cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 54442 2223344431 25555555443 5778999999999998754
No 208
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.70 E-value=22 Score=33.53 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..|.+.|.+. ++.+|..|+..|..+.++.. .....|+...++..|+.++... .+..+++.++..|...+
T Consensus 45 ~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ---VEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHH
Confidence 5667888999987 99999999999999987644 4677888888999999988642 56789999888887765
No 209
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=51.44 E-value=30 Score=30.14 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=50.3
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhC-CcHHHHHHhhhcC--------ChhHHHHHHHHHHHHH
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQE-GVIPALVSISVNG--------STRGRDKAQRLLMLFR 498 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~-G~v~~Lv~L~~~~--------s~~~k~~A~~lL~~L~ 498 (565)
....|.+.|...++..+-.|+.+|-.||.+.. .++..+.+. ..|..|....--. ...+|++|..++.+|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 34567888888899999999999999997554 445555543 3444444332221 2678999999999998
Q ss_pred hh
Q 008437 499 EQ 500 (565)
Q Consensus 499 ~~ 500 (565)
+.
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 210
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.38 E-value=28 Score=30.58 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHHHHHhhhc------CChhHHHHHHHHHHHHHhh
Q 008437 428 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVN------GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 428 g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~------~s~~~k~~A~~lL~~L~~~ 500 (565)
.++..|.+.|.+.++.++-.|+.+|-.+..+. ......+.....+.-|+.+... ....+|+++..++..-...
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34667888888899999999999998877754 4566777777888888887763 3678999888888776654
No 211
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.38 E-value=40 Score=29.65 Aligned_cols=75 Identities=7% Similarity=0.018 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCc-cchhhhhccCCHHHHHHHhcccc--cCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAV--CERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~--~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|.+. ++.++..|+..|..+.+... .+...++...++..|++++.... ...+..+++..+..|...+
T Consensus 48 ~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4567788999987 99999999999999987654 46778888899999999997421 1246789999888887765
No 212
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.12 E-value=22 Score=33.28 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|.+. ++.+|..|+..|..+.+.. ...+..++...++..|+.++... .+..+++.++..+...+
T Consensus 42 ~a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST---PHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHH
Confidence 4567788999987 9999999999999999875 44777888888999999998752 46788888887777665
No 213
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=49.90 E-value=23 Score=31.93 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=56.4
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhc------CChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVN------GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~------~s~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|.+.++.++-.|+.+|-.+..+.. .....+.....+.-|+.+... ....+|+++..+|..-...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999988887654 456667777888888887752 4688999988888876654
No 214
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=48.96 E-value=12 Score=33.87 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.8
Q ss_pred CCCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 008437 69 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 117 (565)
Q Consensus 69 ~p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l 117 (565)
.+..+.||+|+.+..+ +-...||+|+.+-
T Consensus 135 ~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 135 IKKVYICPICGYTAVD--------------------EAPEYCPVCGAPK 163 (170)
T ss_dssp CSCEEECTTTCCEEES--------------------CCCSBCTTTCCBG
T ss_pred CCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCH
Confidence 3567889988776641 2234799998763
No 215
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=48.16 E-value=1.1e+02 Score=31.17 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=82.7
Q ss_pred HHHhccCCC-ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHHHHHHHhh-cCCHHHHH
Q 008437 369 LYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQE 446 (565)
Q Consensus 369 L~nLs~~~~-nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~~Lv~lL~-~~s~~~~e 446 (565)
|.||-.++. ...-+|++++|..+..+..-.+..+...-..+|...+....-... .-...++-++..+. .+++++.-
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEE
Confidence 445555544 456688999999888887778888888888888887764432221 12356777887776 47888999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh
Q 008437 447 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 480 (565)
Q Consensus 447 ~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 480 (565)
...+.|.|+..+.--..+..+..|+|+.|.....
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999999988777888899999999976543
No 216
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=47.09 E-value=5.7 Score=27.80 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCCCCccccccccc
Q 008437 67 PLPPEELRCPISLQ 80 (565)
Q Consensus 67 ~~~p~~f~CpI~~~ 80 (565)
.++|+++.||+|+.
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 36899999999985
No 217
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=46.52 E-value=7.2 Score=28.00 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=12.7
Q ss_pred CCCCCCccccccccc
Q 008437 66 MPLPPEELRCPISLQ 80 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~ 80 (565)
..++|+++.||+|+.
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 456899999999985
No 218
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=46.18 E-value=13 Score=35.63 Aligned_cols=129 Identities=11% Similarity=-0.036 Sum_probs=65.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHH-----HHhccCCC--ChHHHHHcCchHHHhhccCCCChHHHHHHHHHHHHHhcCccc
Q 008437 347 PFLVELCKGKTEHQCKLDALHAL-----YNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG 419 (565)
Q Consensus 347 ~~Lv~lL~~~~~~~~~~~Al~aL-----~nLs~~~~--nk~~iv~~G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~~~~~ 419 (565)
..|..++.++ ++.++..++..| ..|..+++ .|..++..-..+.|..|+.+.+..++..++.-
T Consensus 77 ~~l~~L~~D~-~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~---------- 145 (244)
T 1lrv_A 77 EALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQR---------- 145 (244)
T ss_dssp GGGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHH----------
T ss_pred HHHHHHccCc-CHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHh----------
Confidence 4466677777 888888887642 11222222 12222221111222223444444444443331
Q ss_pred HHHHhcCCCCHHHHHHHhhcCCHHHHHHHHHHH-----HHhhc-CChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHH
Q 008437 420 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL-----FLLCN-GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 493 (565)
Q Consensus 420 r~~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L-----~~Lc~-~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~l 493 (565)
-..+.|..++.+.++.++..++..+ ..+.. .+...+..+...-..+.|..|+.+.+..+|..++.-
T Consensus 146 --------l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 146 --------IPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp --------SCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH
T ss_pred --------cCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHc
Confidence 1122334455566777777776642 22222 223445555544556677788888888888888765
Q ss_pred H
Q 008437 494 L 494 (565)
Q Consensus 494 L 494 (565)
|
T Consensus 218 l 218 (244)
T 1lrv_A 218 A 218 (244)
T ss_dssp S
T ss_pred C
Confidence 4
No 219
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=43.98 E-value=63 Score=28.32 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=55.1
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhh------cCChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISV------NGSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~------~~s~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|.+.++.++-.|+.+|-.+..+.. .....+.....+.-|+.+.. .....+|++...+++.....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999988776443 45566666677788887775 35788999988888877654
No 220
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=41.11 E-value=9.3 Score=30.11 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.9
Q ss_pred CCCCCCccccccccc
Q 008437 66 MPLPPEELRCPISLQ 80 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~ 80 (565)
..++|+++.||+|+.
T Consensus 54 fedlPddW~CPvCga 68 (81)
T 2kn9_A 54 WDDIPDDWSCPDCGA 68 (81)
T ss_dssp TTTSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 457899999999985
No 221
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.03 E-value=8 Score=28.04 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=12.6
Q ss_pred CCCCCCccccccccc
Q 008437 66 MPLPPEELRCPISLQ 80 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~ 80 (565)
..++|+++.||+|+.
T Consensus 30 fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 30 FKDIPDDWVCPLCGV 44 (54)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred hhHCCCCCcCcCCCC
Confidence 346899999999985
No 222
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.77 E-value=20 Score=34.54 Aligned_cols=128 Identities=17% Similarity=0.113 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch-hhHHHHhcCchHHHH
Q 008437 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR-NKELMLAAGVIPLLE 311 (565)
Q Consensus 233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~-nk~~i~~~G~i~~Lv 311 (565)
.+.-++..+|.++.+.+.. +.+..++..... +.++..+..++++|.|+-. ++. .+..+.+......++
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~---~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~ 138 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLG---NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIF 138 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHH
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcC---CCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHH
Confidence 5677888888887654322 233333332222 2467889999999999964 455 566665544455555
Q ss_pred HHhcCC----------cHHHHHHHHHHHhcCCC-CCchhhccCCchHHHHHHhcC----C----CCHHHHHHHHHHHHHh
Q 008437 312 KMISNS----------NSHGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKG----K----TEHQCKLDALHALYNL 372 (565)
Q Consensus 312 ~lL~s~----------~~~~~A~aaL~nLs~~~-~~k~~I~~~g~i~~Lv~lL~~----~----~~~~~~~~Al~aL~nL 372 (565)
..+.+. +.+..++.+++|+|... ..+. +......+++++.. . .+.++.-.++.||.+|
T Consensus 139 ~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL 215 (253)
T 3gae_A 139 ETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 215 (253)
T ss_dssp HHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHH
Confidence 554221 11234666788988641 1111 12344556666552 1 2678888889999888
Q ss_pred cc
Q 008437 373 ST 374 (565)
Q Consensus 373 s~ 374 (565)
..
T Consensus 216 ~~ 217 (253)
T 3gae_A 216 AT 217 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 223
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=38.84 E-value=69 Score=28.24 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-ccchhhhhccCCHHH-HHHHhcccccCCCHHHHHHHHHHHHHhh
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVA-LLRFLESAVCERNSYAQEIGAMALFNLA 291 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~-~~~r~~i~~~G~i~~-Lv~lL~s~~~s~~~~~q~~A~~aL~nLa 291 (565)
+.+..+.+.|++..++.++..|+..|..+.+.. ...+..++...++.. |++++... ...+..+++.++..|...+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k-~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPK-NNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTT-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHHHH
Confidence 456778889975338999999999999999875 567778888899988 88888531 1134678888888777665
No 224
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.19 E-value=19 Score=30.19 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCcccccccccccCC-ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYD-PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~d-PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
|+-|.|..|...+.+ +....-|..||+.+..+-+ .+.|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 567999999988876 5667789999998876544 4679999998864
No 225
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=37.85 E-value=2.7e+02 Score=26.38 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhc-cC
Q 008437 216 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV-NN 294 (565)
Q Consensus 216 e~i~~ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~-~~ 294 (565)
+.+..+...|......++|.-|+..|..+ .. ....++.+...+.. ..+=.+++.++.++..++. .+
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~---D~~WrVre~lA~a~~~~~~~~~ 136 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSK---DNNWRVQEVLAKAFDEFCKKIE 136 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGG---CSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCC---CCCccHHHHHHHHHHHHHHhcC
Confidence 45566777776654678898898876665 21 12234445443332 1566899999999988874 22
Q ss_pred chhhHHHHhcCchHHHHHHhcCCcHHHHHHHHHHHhc--CCCCCchhhccCC-chHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008437 295 NRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLS--FLDDAKPIIGSSH-AVPFLVELCKGKTEHQCKLDALHALYN 371 (565)
Q Consensus 295 ~~nk~~i~~~G~i~~Lv~lL~s~~~~~~A~aaL~nLs--~~~~~k~~I~~~g-~i~~Lv~lL~~~~~~~~~~~Al~aL~n 371 (565)
.+ ..++.+...+.+++....-+++...+- .... ...... +++.|-.+..++ +.-+++....+|..
T Consensus 137 pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~k~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD 204 (240)
T 3l9t_A 137 YK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---FKENPNEAIRRIADLKEDV-SEYVRKSVGNALRD 204 (240)
T ss_dssp TT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---TTTCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---hhcCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHH
Confidence 22 156777777777765444333332221 1111 111122 333333444444 78899999999999
Q ss_pred hccCCC
Q 008437 372 LSTIPS 377 (565)
Q Consensus 372 Ls~~~~ 377 (565)
++..+.
T Consensus 205 ~SK~~P 210 (240)
T 3l9t_A 205 ISKKFP 210 (240)
T ss_dssp HHTTCH
T ss_pred HhhhCH
Confidence 997553
No 226
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.40 E-value=10 Score=27.16 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=12.2
Q ss_pred CCCCCccccccccc
Q 008437 67 PLPPEELRCPISLQ 80 (565)
Q Consensus 67 ~~~p~~f~CpI~~~ 80 (565)
.++|+++.||+|+.
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999985
No 227
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=35.94 E-value=1.1e+02 Score=35.42 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHhccCCCCh-HHHHHcCchHHHhhccCC-----CChHHHHHHHHHHHHHhcCcccHHHHhcCCCCHH
Q 008437 358 EHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVP-----GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVS 431 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk-~~iv~~G~v~~Lv~Ll~~-----~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g~v~ 431 (565)
+...++.|+.++..++..-... ..-.-..+++.|+.+... ..+.++..++.++...+..-......+. .+++
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~ 543 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL 543 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHH
Confidence 6678999999999887432211 011011234444443221 1233333566777766542111123332 4566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 008437 432 GLATVLDTGELIEQEQAVSCLFLLCNG 458 (565)
Q Consensus 432 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 458 (565)
.|+..|...++.++..|+.+|.++|..
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777777777899999999999999974
No 228
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=35.12 E-value=11 Score=27.42 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.5
Q ss_pred CCCCCCccccccccc
Q 008437 66 MPLPPEELRCPISLQ 80 (565)
Q Consensus 66 ~~~~p~~f~CpI~~~ 80 (565)
..++|+++.||+|+.
T Consensus 30 f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 30 WEDIPADWVCPDCGV 44 (55)
T ss_dssp GGGSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 346899999999985
No 229
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.33 E-value=83 Score=30.09 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhccCCC-ChHHHHHcCchHHHhh-c---cCC----CChHHHHHHHHHHHHHhcCccc-HHHHhcCC
Q 008437 358 EHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQS-L---AVP----GDPMWTEKSLAVLLNLAASAAG-KEEMNSTP 427 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~-nk~~iv~~G~v~~Lv~-L---l~~----~~~~~~e~al~~L~nLa~~~~~-r~~i~~~~ 427 (565)
.+..+.-++++++|+-.++. .+..+........+++ + +.+ .+..++-.++.++.|++..-.. +. + .
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~-~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D-L 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C-T
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h-H
Confidence 67788999999999998888 5655544323344444 2 111 2456667778888898872110 10 1 2
Q ss_pred CCHHHHHHHhhc---------CCHHHHHHHHHHHHHhhcCCh
Q 008437 428 GLVSGLATVLDT---------GELIEQEQAVSCLFLLCNGNE 460 (565)
Q Consensus 428 g~v~~Lv~lL~~---------~s~~~~e~Av~~L~~Lc~~~~ 460 (565)
.....+++.+.. .+++..-.++.+|.+|...++
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 345566666653 256677777888888876544
No 230
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.61 E-value=22 Score=29.88 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=40.3
Q ss_pred CCcccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 122 (565)
Q Consensus 70 p~~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 122 (565)
|+-|.|..|...+.| .....-|..||+.+..+-|.. ...|-.|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 466999999999974 456678999999998887742 2369999988875443
No 231
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=33.51 E-value=40 Score=35.03 Aligned_cols=128 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCchHHHH
Q 008437 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN-KELMLAAGVIPLLE 311 (565)
Q Consensus 233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~n-k~~i~~~G~i~~Lv 311 (565)
.+.-++..||.++.+.+.. +.+. .++.....+..+..+..++++|.|+-. +... +..+.+......++
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-------~~l~---~li~~~l~~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~ 310 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-------SDIK---DYIEEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIF 310 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGH---HHHHHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCchH-------HHHH---HHHHHhcCCCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHH
Confidence 4666788888777554321 2222 233322223467888999999999964 4553 44443333455666
Q ss_pred HHhcCC----------cHHHHHHHHHHHhcCCCC-CchhhccCCchHHHHHHhc---------CCCCHHHHHHHHHHHHH
Q 008437 312 KMISNS----------NSHGAATALYLNLSFLDD-AKPIIGSSHAVPFLVELCK---------GKTEHQCKLDALHALYN 371 (565)
Q Consensus 312 ~lL~s~----------~~~~~A~aaL~nLs~~~~-~k~~I~~~g~i~~Lv~lL~---------~~~~~~~~~~Al~aL~n 371 (565)
..+... +.+..++.+++|+|.... .+. +...+..+++++. .. +.++.-.++.||.+
T Consensus 311 ~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~-d~EA~yRlLVALGt 386 (425)
T 3pst_A 311 ETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQE-CEEAAYRLTVAYGN 386 (425)
T ss_dssp HHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHT-SHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHHH
Confidence 655321 112335667789886411 111 1234456666665 23 78899999999999
Q ss_pred hccC
Q 008437 372 LSTI 375 (565)
Q Consensus 372 Ls~~ 375 (565)
|...
T Consensus 387 Lv~~ 390 (425)
T 3pst_A 387 LATV 390 (425)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9853
No 232
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=33.39 E-value=3.3e+02 Score=28.69 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=74.0
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCC-hH-HHHHHHHHHHHHhcCcccHH
Q 008437 345 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGD-PM-WTEKSLAVLLNLAASAAGKE 421 (565)
Q Consensus 345 ~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~-~~-~~e~al~~L~nLa~~~~~r~ 421 (565)
-++.|+.-|.++ .......|+.+|. ...-+..+...+++..|+. +++... -. +....=.++..|+.++-.|.
T Consensus 117 sve~i~~aL~S~-~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirr 191 (500)
T 3vld_A 117 SAEDLVKALRSE-IDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRR 191 (500)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CHHHHHHHHhcC-ChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHH
Confidence 468899999998 8889999999998 5567888888999999999 455432 23 55556666677777665677
Q ss_pred HHhcCCCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 008437 422 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 455 (565)
Q Consensus 422 ~i~~~~g~v~~Lv~lL~~~s~~~~e~Av~~L~~L 455 (565)
.+.. ...+.|..+=.+.++.....-+..|.-+
T Consensus 192 ril~--nnl~lL~~vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 192 RLFD--NNLPYLVSVKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp HHHT--TTHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHH--HhHHHHHHHhcCCCceeHHHHHHHHHHH
Confidence 7775 4677776666556665555555555444
No 233
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.72 E-value=13 Score=28.48 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=12.2
Q ss_pred CCCCCccccccccc
Q 008437 67 PLPPEELRCPISLQ 80 (565)
Q Consensus 67 ~~~p~~f~CpI~~~ 80 (565)
.++|+++.||+|+.
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 46899999999985
No 234
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=32.43 E-value=6.2e+02 Score=29.26 Aligned_cols=130 Identities=13% Similarity=0.061 Sum_probs=80.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhccc---ccCCCHHHHHHHHHHHHHhhccCchh
Q 008437 221 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA---VCERNSYAQEIGAMALFNLAVNNNRN 297 (565)
Q Consensus 221 ll~~L~s~~~~~~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~---~~s~~~~~q~~A~~aL~nLa~~~~~n 297 (565)
+...+... +.+.+.-++++|.++.. ...++.|..+|... ..+....++..|+++|++++...+
T Consensus 445 l~~~~~~~-~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-- 510 (1056)
T 1lsh_A 445 LSQSSDRA-KEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-- 510 (1056)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--
T ss_pred HHHHHhcC-ChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--
Confidence 44555665 77778888888888763 23577888887531 112345788899999999974321
Q ss_pred hHHHHhcCchHHHHHHhcCC--cHHHHHHHHHHHhcCCCCCchhhccCCchHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 008437 298 KELMLAAGVIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 375 (565)
Q Consensus 298 k~~i~~~G~i~~Lv~lL~s~--~~~~~A~aaL~nLs~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~~~~~Al~aL~nLs~~ 375 (565)
.. +-+.|..+..+. +.....+|.+..+-+.+. ...+..++..|..+.+.++..-....|.+|+..
T Consensus 511 -~~-----v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 511 -RK-----VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -HH-----HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 11 234566666432 333333333333322211 235677788887766889999999999999875
Q ss_pred CC
Q 008437 376 PS 377 (565)
Q Consensus 376 ~~ 377 (565)
..
T Consensus 578 ~~ 579 (1056)
T 1lsh_A 578 SN 579 (1056)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 235
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.04 E-value=3.2 Score=33.75 Aligned_cols=40 Identities=28% Similarity=0.485 Sum_probs=24.7
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
..||.|.+.|. + ..|+.+|-.|=..+.. ...||.|+++|.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc--cccCcchhhHHH
Confidence 68999998764 2 2344346655221111 346999999875
No 236
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=31.49 E-value=37 Score=34.50 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhccCccchhhhhccCCHHHHHHHhcccccCCCHHHHHHHHHHHHHhhccCch-hhHHHHhcCchHHHH
Q 008437 233 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR-NKELMLAAGVIPLLE 311 (565)
Q Consensus 233 ~q~~Al~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~s~~~~~q~~A~~aL~nLa~~~~~-nk~~i~~~G~i~~Lv 311 (565)
.+.-++..||.++.+.+. .+.+..++ .....+..+..+..++++|.|+-. +.. .+..+.+......++
T Consensus 179 ~~FP~LDLLRl~v~~~~~-------~~~l~~li---~~~~~~~~~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~ 247 (362)
T 3l3f_X 179 IKTPAYDIVRLIVKKLPY-------SSDIKDYI---EEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIF 247 (362)
T ss_dssp CCHHHHHHHHHHGGGCSC-------GGGGHHHH---HHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHH
T ss_pred ccchHHHHHHHHhcCCCh-------HHHHHHHH---HHhcCCCChhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHH
Confidence 366788888888755432 12333333 222223467888999999999964 455 344443322344455
Q ss_pred HHhcC----C------cHHHHHHHHHHHhcCCCC-CchhhccCCchHHHHHHhc---------CCCCHHHHHHHHHHHHH
Q 008437 312 KMISN----S------NSHGAATALYLNLSFLDD-AKPIIGSSHAVPFLVELCK---------GKTEHQCKLDALHALYN 371 (565)
Q Consensus 312 ~lL~s----~------~~~~~A~aaL~nLs~~~~-~k~~I~~~g~i~~Lv~lL~---------~~~~~~~~~~Al~aL~n 371 (565)
..+.. . +.+..++.+++|+|.... .+. +...+..+++++. .. +.++.-.++.||.+
T Consensus 248 ~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~-d~EA~yRlLVALGt 323 (362)
T 3l3f_X 248 ETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQE-CEEAAYRLTVAYGN 323 (362)
T ss_dssp HHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHT-SHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHHH
Confidence 54421 1 112335667789886411 011 1234456666665 23 78899999999999
Q ss_pred hcc
Q 008437 372 LST 374 (565)
Q Consensus 372 Ls~ 374 (565)
|..
T Consensus 324 L~~ 326 (362)
T 3l3f_X 324 LAT 326 (362)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 237
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.44 E-value=57 Score=30.67 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=54.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHHhhc
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQR 501 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~~~r 501 (565)
++..|.+.|...++.++-.|+.+|-.+..+.. .....+.....+..|+.|+.. ....+|+++..+|+.....=
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 45667888888999999999999888776543 345556566666677666544 56789999999988877543
No 238
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.00 E-value=28 Score=29.32 Aligned_cols=49 Identities=10% Similarity=0.202 Sum_probs=38.7
Q ss_pred CCcccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
|+-|.|..|...+.+ +....-|..||+.+..+-+.. ...|..|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 578999999999863 677789999999998776632 2379999988754
No 239
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.58 E-value=85 Score=29.17 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=54.1
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCcHHHHHHhhhc-CChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~-~s~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|...++.++-.|+.+|-.+..+.. .....+.....+..|+.+..+ ....+|+++..+++.....
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 45567778888999999999999988887764 345566666677777776654 4678999988888876654
No 240
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.22 E-value=16 Score=29.21 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.3
Q ss_pred CCCCCccccccccc
Q 008437 67 PLPPEELRCPISLQ 80 (565)
Q Consensus 67 ~~~p~~f~CpI~~~ 80 (565)
.++|+++.||+|+.
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999985
No 241
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=28.24 E-value=1.7e+02 Score=28.93 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcCchHHHHHHh--cC-Cc-HHHHHHHHHHHh-cCCCCCchhhcc--CCchHHH
Q 008437 277 SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMI--SN-SN-SHGAATALYLNL-SFLDDAKPIIGS--SHAVPFL 349 (565)
Q Consensus 277 ~~~q~~A~~aL~nLa~~~~~nk~~i~~~G~i~~Lv~lL--~s-~~-~~~~A~aaL~nL-s~~~~~k~~I~~--~g~i~~L 349 (565)
...-+.|+..|.-+| ++-..-..|++.. ...|-.++ .. +. .++.|+.++..- -.++.....|.. ...+..+
T Consensus 42 ~~~le~aLD~L~ElS-HDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFA-HDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGT-TSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 334566666677776 4444444444422 23333333 11 22 256676666543 233333333332 3555555
Q ss_pred HHHhcC----C--CCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhhccCCC--ChHHHHHHHHHHHHHhc
Q 008437 350 VELCKG----K--TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG--DPMWTEKSLAVLLNLAA 415 (565)
Q Consensus 350 v~lL~~----~--~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~Ll~~~--~~~~~e~al~~L~nLa~ 415 (565)
..-|.. + ......+.-+.+|-.|..+... + ....+..|++++... +..++.+++.++..+-.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 444432 1 1446788889999999887521 1 134567777755444 78888888888876653
No 242
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=28.14 E-value=17 Score=29.40 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=35.5
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
|-|-.|-.-.+ =.|.++.|-+|+.|+..-+.. ...||+|+.+|...
T Consensus 29 ~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccChhhccccC-CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 66777776555 346678899999999988875 56799999998643
No 243
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=27.97 E-value=4.2e+02 Score=26.68 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHcC-chHHHhh----ccCC----CChHHHHHHHHHHHHHhcCcccHHHHhcCCC
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSAG-IISGLQS----LAVP----GDPMWTEKSLAVLLNLAASAAGKEEMNSTPG 428 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~G-~v~~Lv~----Ll~~----~~~~~~e~al~~L~nLa~~~~~r~~i~~~~g 428 (565)
.+..+.-++++|+||-.+..-...++... ....+++ .+.+ .+..++-.+..++.|++..-.. .. .+ ..
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~-~~-~~-~e 288 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK-GN-SD-LE 288 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH-TC-SC-TT
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc-cc-ch-HH
Confidence 67788899999999988887555555322 1233333 2211 2456667777888898873210 00 01 13
Q ss_pred CHHHHHHHhh---------cCCHHHHHHHHHHHHHhhcCChH
Q 008437 429 LVSGLATVLD---------TGELIEQEQAVSCLFLLCNGNEK 461 (565)
Q Consensus 429 ~v~~Lv~lL~---------~~s~~~~e~Av~~L~~Lc~~~~~ 461 (565)
.+..+++.+. ..+++..-.++.+|.+|...++.
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 4566777776 24778888888899988865543
No 244
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=26.64 E-value=23 Score=28.79 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=11.2
Q ss_pred cchHHHHHHHhc
Q 008437 94 YERICIEKWLSD 105 (565)
Q Consensus 94 y~r~~I~~~~~~ 105 (565)
|||.|+-+|+.+
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 245
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.63 E-value=25 Score=28.57 Aligned_cols=12 Identities=42% Similarity=1.138 Sum_probs=11.1
Q ss_pred cchHHHHHHHhc
Q 008437 94 YERICIEKWLSD 105 (565)
Q Consensus 94 y~r~~I~~~~~~ 105 (565)
|||.|+-+|+.+
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 246
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=24.76 E-value=5.1e+02 Score=25.50 Aligned_cols=149 Identities=13% Similarity=0.044 Sum_probs=94.9
Q ss_pred chHHHHHHhcCC--C---CHHHHHHHHHHHHHhccCCCChHHHHHc--CchHHHhhccCCCChHHHHHHHHHHHHHhc-C
Q 008437 345 AVPFLVELCKGK--T---EHQCKLDALHALYNLSTIPSNIPNLLSA--GIISGLQSLAVPGDPMWTEKSLAVLLNLAA-S 416 (565)
Q Consensus 345 ~i~~Lv~lL~~~--~---~~~~~~~Al~aL~nLs~~~~nk~~iv~~--G~v~~Lv~Ll~~~~~~~~e~al~~L~nLa~-~ 416 (565)
.+..+..+++++ . +......|+..|-.+|.+-+--.+|++. ..+..|+ +.......+++.|.++|..--. +
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 344555666655 1 3346788888888888877767777763 2333333 1233456788889888876555 4
Q ss_pred cccHHHHh-cCCCCHHHHHHHhhc-------CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcC--ChhH
Q 008437 417 AAGKEEMN-STPGLVSGLATVLDT-------GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRG 486 (565)
Q Consensus 417 ~~~r~~i~-~~~g~v~~Lv~lL~~-------~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~--s~~~ 486 (565)
+.....|. ..+..+..+..-|.. .....+..-++||..|...+.... ...+..|..+..-. .+.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHH
Confidence 44444442 335666666555543 355677788899999998764221 33557777666666 8999
Q ss_pred HHHHHHHHHHHHh
Q 008437 487 RDKAQRLLMLFRE 499 (565)
Q Consensus 487 k~~A~~lL~~L~~ 499 (565)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999988887553
No 247
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.27 E-value=69 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
|+-|.|..|...+.+--...-|..||+.+..+-| .+.|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 4668888888877664444578888887754433 46788888876543
No 248
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.01 E-value=21 Score=32.53 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCcccccccccccCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 119 (565)
Q Consensus 70 p~~f~CpI~~~~m~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 119 (565)
|+-|.|..|...+.+ +....-|..||+.+..+-|.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 577999999999875 777789999999998776632 1269999888764
No 249
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=23.72 E-value=4.5e+02 Score=24.85 Aligned_cols=132 Identities=11% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhccCCCChHHHHHcCchHHHhh-ccCCCChHHHHHHHHHHHHHhc--CcccHHHHhcC
Q 008437 350 VELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA--SAAGKEEMNST 426 (565)
Q Consensus 350 v~lL~~~~~~~~~~~Al~aL~nLs~~~~nk~~iv~~G~v~~Lv~-Ll~~~~~~~~e~al~~L~nLa~--~~~~r~~i~~~ 426 (565)
..|..++ ..+++-.|+.+|..+ . .. ..+++.+.. +..+..-.+++.+..++..++. .++
T Consensus 77 ~~L~~~~-~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------- 138 (240)
T 3l9t_A 77 FLAYQSD-VYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------- 138 (240)
T ss_dssp HHHHTCS-SHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHhCc-chHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------
Confidence 3444555 678888888887777 2 11 224555555 5566778888888888888875 221
Q ss_pred CCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhhcCChhHHHHHHHHHHHHHhhccc
Q 008437 427 PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 503 (565)
Q Consensus 427 ~g~v~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~~s~~~k~~A~~lL~~L~~~r~~ 503 (565)
..++.+...+.+.+..++..|+..+.--|.... .. .--+-++|.|-.+..+.+.-+|+.....|+-+++..+.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~-~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY-FK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT-TT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch-hh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 256777788888899999888887654333211 00 00012455555677777888888877888777765433
No 250
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.70 E-value=1.3e+02 Score=26.32 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=52.2
Q ss_pred CHHHHHHHhh-cCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCcHHH-HHHhhhc---CChhHHHHHHHHHHHHHhh
Q 008437 429 LVSGLATVLD-TGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPA-LVSISVN---GSTRGRDKAQRLLMLFREQ 500 (565)
Q Consensus 429 ~v~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~v~~-Lv~L~~~---~s~~~k~~A~~lL~~L~~~ 500 (565)
++..|.+.|. ..++.++-.|+.+|-.+..+. ......+.....+.- |+.+... ....+|+++..++..-...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566788887 478999999999998877754 455666667777777 6776532 2358899888888876654
No 251
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.17 E-value=81 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 120 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 120 (565)
|+-|.|..|...+.+--...-|..||..+..+-|. +.|..|++++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 57799999998887654556899999998776553 5688888877543
No 252
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.28 E-value=21 Score=21.42 Aligned_cols=12 Identities=33% Similarity=0.899 Sum_probs=9.1
Q ss_pred cccccccccccC
Q 008437 72 ELRCPISLQLMY 83 (565)
Q Consensus 72 ~f~CpI~~~~m~ 83 (565)
...||+|.+.|-
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 357999988883
No 253
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.02 E-value=23 Score=32.47 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=16.7
Q ss_pred cccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 008437 72 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 116 (565)
Q Consensus 72 ~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~ 116 (565)
.+.|++|+.++. |- .-...||.|+.+
T Consensus 155 ~~~C~~CG~~~~-------g~------------~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHE-------GT------------GAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEE-------EE------------ECCSBCTTTCCB
T ss_pred eEEECCCCCEee-------CC------------CCCCCCCCCcCC
Confidence 688888766543 11 223479999875
No 254
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.71 E-value=7.2 Score=30.75 Aligned_cols=40 Identities=20% Similarity=0.482 Sum_probs=22.1
Q ss_pred ccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 008437 73 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 73 f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
..||.|...|. + ..+..+|..|=.. |.. ...||.|+++|.
T Consensus 3 ~~CP~C~~~l~-~---~~~~~~C~~C~~~-~~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALE-R---NGDTAHCETCAKD-FSL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCE-E---CSSEEECTTTCCE-EEE-EEECSSSCSCCC
T ss_pred CCCCCCCCccc-c---CCCceECcccccc-CCC-cccCcchhhHHH
Confidence 56999988663 1 2333334444111 111 236999998875
No 255
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.42 E-value=29 Score=32.17 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=18.3
Q ss_pred CCcccccccccccCCceecCCCcccchHHHHHHHhcCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK 116 (565)
Q Consensus 70 p~~f~CpI~~~~m~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~t~~~ 116 (565)
...+.|++|+.++. | .....||+|+.+
T Consensus 169 ~~~~~C~~CG~i~~-------g-------------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 169 DKFHLCPICGYIHK-------G-------------EDFEKCPICFRP 195 (202)
T ss_dssp CCEEECSSSCCEEE-------S-------------SCCSBCTTTCCB
T ss_pred CcEEEECCCCCEEc-------C-------------cCCCCCCCCCCC
Confidence 35788998887753 1 012579999875
No 256
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.33 E-value=22 Score=31.68 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 008437 108 STCPKTQQKL 117 (565)
Q Consensus 108 ~~cP~t~~~l 117 (565)
..||.||.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4799999765
No 257
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=21.07 E-value=65 Score=30.64 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=30.3
Q ss_pred CCCcccchHHHHHHHhc-CCCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHH
Q 008437 89 ASGQTYERICIEKWLSD-GHSTCPKTQQKLPHL-----CLTPNYCVKGLIASWCEM 138 (565)
Q Consensus 89 ~~g~ty~r~~I~~~~~~-~~~~cP~t~~~l~~~-----~l~pn~~l~~~i~~~~~~ 138 (565)
.||++|++..+...+.. ..+.||.|+..+.+. +..|...+.+.. +|..+
T Consensus 126 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~-~~~~~ 180 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAI-GLSSR 180 (246)
T ss_dssp TTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHH-HHHHH
T ss_pred CCCCCCcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHH-HHHhc
Confidence 58888988877665543 257899999776552 234544444433 44443
No 258
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=86 Score=23.37 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCcccccccccccCC-ceecCCCcccch-HHHHHHHhcCCCCCCCCCCCCC
Q 008437 70 PEELRCPISLQLMYD-PVIIASGQTYER-ICIEKWLSDGHSTCPKTQQKLP 118 (565)
Q Consensus 70 p~~f~CpI~~~~m~d-PV~~~~g~ty~r-~~I~~~~~~~~~~cP~t~~~l~ 118 (565)
++-|.|..|...+.+ +....-|..||+ .+..+-| .+.|-.|+..+.
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCcee
Confidence 567999999998877 666778999998 5876544 346888876543
No 259
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.68 E-value=7e+02 Score=25.62 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhccCCCChHHHHHc-CchHHHhhccC----C----CChHHHHHHHHHHHHHhcCccc-HHHHhcCC
Q 008437 358 EHQCKLDALHALYNLSTIPSNIPNLLSA-GIISGLQSLAV----P----GDPMWTEKSLAVLLNLAASAAG-KEEMNSTP 427 (565)
Q Consensus 358 ~~~~~~~Al~aL~nLs~~~~nk~~iv~~-G~v~~Lv~Ll~----~----~~~~~~e~al~~L~nLa~~~~~-r~~i~~~~ 427 (565)
.+..+.-++++|+||-.++.-...++.. .....+++++. + .+..++-.++.++.|++..-.. +. + .
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~-~ 350 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D-L 350 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C-T
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h-H
Confidence 6778889999999998888755555543 23445555221 1 2356667777888898873210 00 1 1
Q ss_pred CCHHHHHHHhh---------cCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCcHHHHHHhhh--cCChhHHHHHHH
Q 008437 428 GLVSGLATVLD---------TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV--NGSTRGRDKAQR 492 (565)
Q Consensus 428 g~v~~Lv~lL~---------~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~--~~s~~~k~~A~~ 492 (565)
..+..+++.+. ..+++..-.++.+|.+|...++..++... .+..+-.... ...+|.+.-+..
T Consensus 351 el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~---~~~~~~~~~~~~~~e~R~~~v~~e 423 (425)
T 3pst_A 351 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN---SVTWLANIKRSYGNVPRFKDIFDD 423 (425)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHT---TCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhc---CHHHHHHHHHhcccchHHHHHHHh
Confidence 34556777776 24777888888899888875554333322 2223322221 235666655544
No 260
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=1.1e+02 Score=22.43 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=28.2
Q ss_pred CCcccccccccccCC-ceecCCCcccchHHHHHHHhc
Q 008437 70 PEELRCPISLQLMYD-PVIIASGQTYERICIEKWLSD 105 (565)
Q Consensus 70 p~~f~CpI~~~~m~d-PV~~~~g~ty~r~~I~~~~~~ 105 (565)
++-|.|..|...+.+ +....-|..||+.+..+-|..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 456999999988765 356678899999998888864
Done!