Your job contains 1 sequence.
>008439
MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQEMIHLAMSPDVVIQEVVYKAKAELQQ
LAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDFVAL
GYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAE
LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELE
IIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSV
RLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYF
NTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD
RKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQ
LVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTD
QESEGLNLPDSPFANPIASGISTVT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008439
(565 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2051239 - symbol:AT2G05160 species:3702 "Arabi... 1010 1.3e-113 2
TAIR|locus:2085211 - symbol:AT3G52980 species:3702 "Arabi... 617 9.3e-84 2
TAIR|locus:2083740 - symbol:AT3G51950 species:3702 "Arabi... 365 4.5e-54 4
TAIR|locus:505006612 - symbol:AT5G12440 species:3702 "Ara... 339 2.3e-41 3
TAIR|locus:2092970 - symbol:AT3G21100 species:3702 "Arabi... 349 3.8e-40 3
TAIR|locus:2033882 - symbol:AT1G51520 species:3702 "Arabi... 343 5.6e-39 2
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p... 129 2.9e-05 1
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p... 129 2.9e-05 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 126 4.8e-05 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 120 0.00022 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 120 0.00027 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 120 0.00028 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 120 0.00029 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 120 0.00029 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 120 0.00029 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 120 0.00029 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 118 0.00045 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 118 0.00047 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 117 0.00061 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 116 0.00079 1
>TAIR|locus:2051239 [details] [associations]
symbol:AT2G05160 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0090305 GO:GO:0004518 EMBL:AC007018
EMBL:AY429380 EMBL:AY429381 IPI:IPI00541993 PIR:E84465
RefSeq:NP_178588.1 UniGene:At.41216 ProteinModelPortal:Q9SJ41
SMR:Q9SJ41 EnsemblPlants:AT2G05160.1 GeneID:815064
KEGG:ath:AT2G05160 TAIR:At2g05160 eggNOG:NOG258283
HOGENOM:HOG000242520 InParanoid:Q9SJ41 OMA:WENSTEM PhylomeDB:Q9SJ41
ProtClustDB:CLSN2912923 Genevestigator:Q9SJ41 InterPro:IPR025605
Pfam:PF12872 PROSITE:PS51644 Uniprot:Q9SJ41
Length = 536
Score = 1010 (360.6 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 229/459 (49%), Positives = 289/459 (62%)
Query: 123 SDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELP 182
S ++ LQ+ QFL+ ED + N FS + L R RR SL E P
Sbjct: 107 STEMDTLQNNLQFLNFEDPLTSPEFSNGFFSQE-------RQCLPLRTSRRSPSL-PEFP 158
Query: 183 VKTCHYFNKGFCKHGSNCRYYHGLV---SESFTQMFGQTSPDGFNDDHLFSPGSXXXXXX 239
VK CHYFNKGFCKHG+NCRY+HG + ESF QMF + + +++H+ SP S
Sbjct: 159 VKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNN-NLSDEEHVVSPVSLEKLEG 217
Query: 240 XXXXXXXARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNS 299
RRG PISIASLPM+YYEKYG+ LQA GYLTESQRHGKAGYSLTKLLARLKN+
Sbjct: 218 EIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNT 277
Query: 300 VRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNY 359
+RL+DRPHGQH+VILAEDA K++E ER++ G I+ GSRQIYLTFPAES+FTE DVS Y
Sbjct: 278 IRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIY 337
Query: 360 FNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
F +YG V+DVRIPCQQKRM+GFVTFAS++TVK ILAKGNPHF+C ARVLVKPYREKS+
Sbjct: 338 FTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR-- 395
Query: 420 DRKYQERMES--PMYFSPQYVDMDSELHSFS-RGCETSRFIRKXXXXXXXXXXXXXXXXX 476
+Y + + M + ++++ D E+++ R E+SR +RK
Sbjct: 396 SSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSR-MRKPFLSEPEQS-------- 446
Query: 477 XXXXXVRKPMP-NPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVE 535
V K +P N Y G D K++ + AER+ YL+ LN T D V ++
Sbjct: 447 -----VSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERLSYLLDYLN----TEDNVMNIT 497
Query: 536 TNYTDQE---------SEGLNLPDSPFANPIASGISTVT 565
TNY D + S+ LNLP+SPF++ ISTVT
Sbjct: 498 TNYRDNDRRTHCESLDSQVLNLPESPFSSLSGKEISTVT 536
Score = 131 (51.2 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 45/150 (30%), Positives = 68/150 (45%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQ----EMIHLAMSPDVVIQEVVYKAKA 56
M+F+ES +V RI++L+PEN KI GYLLL ++ +MI LA PD V+ V+ K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 57 ELQQLAMKXXXXXXXXXXXXXVNEVSFQFNPFSSRPP--VSPAGCRVPSYWDHQV---TN 111
EL + + +F F+ P VS + +W++ T
Sbjct: 61 ELARNSHHYHSPPSDHIPTP-------KFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTL 113
Query: 112 KNNSDFVALGYSDSINELQSQTQFLSLEDQ 141
+NN F L + D + + F S E Q
Sbjct: 114 QNNLQF--LNFEDPLTSPEFSNGFFSQERQ 141
>TAIR|locus:2085211 [details] [associations]
symbol:AT3G52980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009505 "plant-type cell wall" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009505 EMBL:AL132969
eggNOG:NOG258283 HOGENOM:HOG000242520 InterPro:IPR025605
Pfam:PF12872 PROSITE:PS51644 IPI:IPI00519582 PIR:T47555
RefSeq:NP_190866.1 UniGene:At.53909 ProteinModelPortal:Q9LF94
SMR:Q9LF94 EnsemblPlants:AT3G52980.1 GeneID:824464
KEGG:ath:AT3G52980 TAIR:At3g52980 InParanoid:Q9LF94 OMA:RYFHGHP
PhylomeDB:Q9LF94 ProtClustDB:CLSN2915555 Genevestigator:Q9LF94
Uniprot:Q9LF94
Length = 381
Score = 617 (222.3 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
Identities = 123/198 (62%), Positives = 149/198 (75%)
Query: 200 CRYYHGLVSESFTQMFGQTSPDGFNDD-HLFSPGSXXXXXXXXXXXXXARRGNPISIASL 258
C Y++ + F + G + +D+ H+ SPGS +RRG PISIA L
Sbjct: 170 CHYFN----KGFCK-HGNNCHNNLSDEEHVVSPGSLEKLEREIIELLKSRRGAPISIAFL 224
Query: 259 PMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA 318
PM+Y+EKYG+ LQA GYLTESQRHGKAG+SLTKLLARLKN++RLIDRPHGQH+VILAED
Sbjct: 225 PMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVILAEDV 284
Query: 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM 378
K++E ERS+ G I+ GSRQ+YLTFPAES+FTE DVSNYF+ GPV+DVRIPCQQKRM
Sbjct: 285 SKFVEYTGERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVEDVRIPCQQKRM 344
Query: 379 FGFVTFASADTVKMILAK 396
+GFVTF +TVK ILAK
Sbjct: 345 YGFVTFVYMETVKRILAK 362
Score = 241 (89.9 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
Identities = 76/209 (36%), Positives = 105/209 (50%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLL-QEQ---EMIHLAMSPDVVIQEVVYKAKA 56
M+F+E+ +V NRI +L+PEN +KIIGYLLL Q+Q +MI LA PD V++ ++ K
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 57 ELQQLAMKXXXXXXXXXXXXXVNEVSFQFNP---FSSRPP-VSPAGCRVPSYWDHQVTNK 112
EL + + +S N S+ PP V G S+W+ N
Sbjct: 61 ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGT---SFWE----NT 113
Query: 113 NNSDFVALGYSDSINELQSQTQ-FLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAG 171
N+ D + L+ Q FL ED + + FS+ ++S S L R
Sbjct: 114 NDMD----------SSLKDNVQYFLDFEDSVT-----SPEFSTS-FFSQKKQS-LSLRTS 156
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNC 200
RR SL E P+K CHYFNKGFCKHG+NC
Sbjct: 157 RRSLSL-PEFPLKICHYFNKGFCKHGNNC 184
>TAIR|locus:2083740 [details] [associations]
symbol:AT3G51950 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0090305
EMBL:AL049711 GO:GO:0004518 HOGENOM:HOG000242520 EMBL:AY080846
EMBL:AY150500 EMBL:AK316715 EMBL:AY088484 IPI:IPI00523195
PIR:T49074 RefSeq:NP_001030840.1 RefSeq:NP_190763.1
UniGene:At.43143 ProteinModelPortal:Q9SV09 SMR:Q9SV09 STRING:Q9SV09
PaxDb:Q9SV09 PRIDE:Q9SV09 EnsemblPlants:AT3G51950.1
EnsemblPlants:AT3G51950.2 GeneID:824358 KEGG:ath:AT3G51950
TAIR:At3g51950 eggNOG:NOG276617 InParanoid:Q9SV09 OMA:NQTTERE
PhylomeDB:Q9SV09 ProtClustDB:CLSN2684736 Genevestigator:Q9SV09
Uniprot:Q9SV09
Length = 540
Score = 365 (133.5 bits), Expect = 4.5e-54, Sum P(4) = 4.5e-54
Identities = 75/130 (57%), Positives = 92/130 (70%)
Query: 311 AVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
A+++ ++ K R ER D + SRQIYLTFPA+S F E+DVSNYF+T+GPV DV
Sbjct: 229 ALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDV 288
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
RIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY+ +
Sbjct: 289 RIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPD-KYRTNQTT 347
Query: 430 PMYFSPQYVD 439
SP +D
Sbjct: 348 ERELSPTGLD 357
Score = 158 (60.7 bits), Expect = 4.5e-54, Sum P(4) = 4.5e-54
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KAK E
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 58 L 58
L
Sbjct: 61 L 61
Score = 81 (33.6 bits), Expect = 4.5e-54, Sum P(4) = 4.5e-54
Identities = 30/109 (27%), Positives = 46/109 (42%)
Query: 103 SYWDHQ---VTNKNN--SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCY 157
S W HQ ++ KNN S N +S + + M+ +N +T F +
Sbjct: 69 SPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRSTDFLGSVH 128
Query: 158 YSDAA--LSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYH 204
+ L LG G +P C YF +GFCK+G++CR+ H
Sbjct: 129 ARSGSCVLDGLGY-GGDSDLGFGG-VP---CSYFARGFCKNGASCRFVH 172
Score = 47 (21.6 bits), Expect = 4.5e-54, Sum P(4) = 4.5e-54
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 547 NLPDSPFANP 556
+LPDSPFA+P
Sbjct: 465 SLPDSPFASP 474
>TAIR|locus:505006612 [details] [associations]
symbol:AT5G12440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL592312
HOGENOM:HOG000242520 EMBL:AK119121 EMBL:BT002509 IPI:IPI00534948
RefSeq:NP_001190296.1 RefSeq:NP_001190297.1 RefSeq:NP_568277.5
UniGene:At.32141 ProteinModelPortal:Q94CJ8 SMR:Q94CJ8 PRIDE:Q94CJ8
EnsemblPlants:AT5G12440.1 EnsemblPlants:AT5G12440.2
EnsemblPlants:AT5G12440.3 GeneID:831119 KEGG:ath:AT5G12440
TAIR:At5g12440 eggNOG:NOG243110 OMA:YERREMM ProtClustDB:CLSN2927451
Genevestigator:Q94CJ8 Uniprot:Q94CJ8
Length = 650
Score = 339 (124.4 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 59/93 (63%), Positives = 80/93 (86%)
Query: 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILA 395
+ SRQIYLTFPA+STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA +TVK++LA
Sbjct: 354 SASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLA 413
Query: 396 KGNPHFVCGARVLVKPYREKSKLVDRKYQERME 428
+GNPHF+C +RVLVKPY+EK K++D+K Q+ ++
Sbjct: 414 RGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQ 446
Score = 117 (46.2 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD ++T ++ +I+ L+P+ KIIGYLLL + ++++HLA P+ ++Q + K K+
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 58 L 58
L
Sbjct: 61 L 61
Score = 81 (33.6 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHG 205
K C YF++G CK+G +C++ HG
Sbjct: 231 KPCVYFSRGLCKNGESCKFIHG 252
>TAIR|locus:2092970 [details] [associations]
symbol:AT3G21100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00541186 RefSeq:NP_001030738.1 UniGene:At.48687
ProteinModelPortal:F4IWD6 SMR:F4IWD6 PRIDE:F4IWD6
EnsemblPlants:AT3G21100.2 GeneID:821662 KEGG:ath:AT3G21100
OMA:HERDEFM Uniprot:F4IWD6
Length = 602
Score = 349 (127.9 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 62/103 (60%), Positives = 86/103 (83%)
Query: 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILA 395
+ S+QIYLTFPA+S+FT++DVSNYF +GPV DVRIP QQKRMFGFVTF ++TV++ILA
Sbjct: 315 SASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILA 374
Query: 396 KGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMY---FSP 435
+GNPHF+C +RVLVKPY+EK ++++++ Q+++ M FSP
Sbjct: 375 RGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSP 417
Score = 127 (49.8 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 64/239 (26%), Positives = 104/239 (43%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F +I+ L+P+ +KIIGYLLLQ+ +++ LA+ P+ ++Q V KAK+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 58 LQQLAMKXXXXXXX----XXXXXXVNEVSFQFN-PFS--SRPPVSPAGCRVPSYWDHQVT 110
L L+ ++ S + P + SR P+SP+ S +
Sbjct: 61 LG-LSSNGSSSASSPLNPISRPINIHRHSLSHSSPGNGFSRNPLSPSFATPGSLGSNP-- 117
Query: 111 NKNNSDFVA---LGYSD--SINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSN 165
N +S F A L SD + + FL + +++ N S + +D +L
Sbjct: 118 NMISSPFQASSSLFASDGAAAGDSTGNGDFLDEQQLGNYLSFLNESSSKN---NDESLDP 174
Query: 166 LGARA--GRRYQSLNAELPVKTCHYFNK-GFCKHGSNCRYYHGLVSESFTQMFGQTSPD 221
G A G + + C + GF G N R+ HG + + F G SPD
Sbjct: 175 FGFSADNGDAHLHKRSFSASDACFGSEEPGFGGGGYN-RFLHGGLGDDFDSPGGFGSPD 232
Score = 41 (19.5 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 525 STTGDRVKHVETNYTDQESEGLN------LPDSPFANPIASG 560
S TG + E Y ++G LPDS FA+P +G
Sbjct: 532 SDTGHNISQ-ERGYNSHLNKGQETSLENTLPDSFFASPSKTG 572
Score = 41 (19.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 413 REKSKLVDRKYQERMESPMYFSPQYVDMDSE--LH 445
R K++ D + + + S Q DMDSE LH
Sbjct: 447 RRKAEQADLQQAIEFQRRRFLSLQLPDMDSESFLH 481
>TAIR|locus:2033882 [details] [associations]
symbol:AT1G51520 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00546547 RefSeq:NP_849792.1 UniGene:At.37800
ProteinModelPortal:F4I9J8 SMR:F4I9J8 PRIDE:F4I9J8
EnsemblPlants:AT1G51520.2 GeneID:841577 KEGG:ath:AT1G51520
OMA:GRHERED PhylomeDB:F4I9J8 Uniprot:F4I9J8
Length = 513
Score = 343 (125.8 bits), Expect = 5.6e-39, Sum P(2) = 5.6e-39
Identities = 64/113 (56%), Positives = 89/113 (78%)
Query: 316 EDAPKYL-ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ 374
E+ Y + R+ER D + S+QIYLTFP+ES+FT++DVS YF +G VDDVRIP Q
Sbjct: 247 EECGNYFSQGRHERED-----SVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQ 301
Query: 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERM 427
Q+RM+GFVTFA A+TV+ ILA+GNPHF+C +RVLVKPY+EK K++ ++ Q+++
Sbjct: 302 QQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQL 354
Score = 125 (49.1 bits), Expect = 5.6e-39, Sum P(2) = 5.6e-39
Identities = 49/173 (28%), Positives = 79/173 (45%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQE---MIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F++I+ + EN +++I Y LLQ+ E +I +A PD +IQ KAK +
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 58 LQQLAMKXXXXXXXXXXXXXVNEVSFQFNPFSSRP--PVSPAGCRVPSYWDHQVTNKNNS 115
L + + F FS P P+S + + + D++ N N+S
Sbjct: 61 LGFSSNGFSRPINIHGQSLSSSSPRNGFLEFSRNPSNPLS-SSLTLNTLRDNK-PNFNSS 118
Query: 116 DF---VALGYSDSINELQSQ---TQFLSLEDQMEHVNLGNTGFSSD--CYYSD 160
F +L S S +E Q Q FL D+ N FS++ C+ S+
Sbjct: 119 PFRESSSLFASSSGDEQQQQQFSNNFLFTNDEDPFANSHKRSFSANDACFESE 171
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 43/139 (30%), Positives = 68/139 (48%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
YY+++GK+ SQR G+ + +A + + RPH ++A K
Sbjct: 40 YYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV--DAAMAARPHSIDGRVVAS---K 94
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRM 378
+ R E PG VT ++++++ E T TE + +YF YG +D + I Q +K
Sbjct: 95 RVVPREESGKPGACVT-TKKLFVGGIKEDT-TERHLRDYFERYGTIDAIEIIRQSGRKTA 152
Query: 379 FGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 FGFVTFDDHDPVDKIVLQK 171
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 43/139 (30%), Positives = 68/139 (48%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
YY+++GK+ SQR G+ + +A + + RPH ++A K
Sbjct: 40 YYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV--DAAMAARPHSIDGRVVAS---K 94
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRM 378
+ R E PG VT ++++++ E T TE + +YF YG +D + I Q +K
Sbjct: 95 RVVPREESGKPGACVT-TKKLFVGGIKEDT-TERHLRDYFERYGTIDAIEIIRQSGRKTA 152
Query: 379 FGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 FGFVTFDDHDPVDKIVLQK 171
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 126 (49.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 40/139 (28%), Positives = 64/139 (46%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + V + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDVAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ---KRM 378
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKRG 141
Query: 379 FGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 FGFVTFDDHDPVDKIVLQK 160
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 39 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 94
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 95 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 152
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 GFGFVTFDDHDPVDKIVLQK 172
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 39 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 94
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 95 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 152
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 GFGFVTFDDHDPVDKIVLQK 172
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 118 (46.6 bits), Expect = 0.00045, P = 0.00045
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFAEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 36 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHTIDGRVVE---PKR 91
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 92 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 149
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 150 GFGFVTFDDHDPVDKIVLQK 169
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 39/140 (27%), Positives = 62/140 (44%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K+ L K
Sbjct: 154 GFGFVTFDDHDPVDKIFLQK 173
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 39/140 (27%), Positives = 62/140 (44%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG VD + I + KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKVDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGF TF D V K++L K
Sbjct: 154 GFGFFTFDDHDPVDKIVLQK 173
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 565 517 0.00089 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 609 (65 KB)
Total size of DFA: 294 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.51u 0.13s 40.64t Elapsed: 00:00:02
Total cpu time: 40.51u 0.13s 40.64t Elapsed: 00:00:02
Start: Tue May 21 06:49:08 2013 End: Tue May 21 06:49:10 2013