BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008439
(565 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576322|ref|XP_002529054.1| RNA binding protein, putative [Ricinus communis]
gi|223531534|gb|EEF33365.1| RNA binding protein, putative [Ricinus communis]
Length = 551
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/574 (70%), Positives = 467/574 (81%), Gaps = 34/574 (5%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSE TR+VFN+IKK++PENVTKIIGYLLLQ+ QEMI+LAMSPDVVIQ+V+YKAKAE
Sbjct: 1 MDFSEHTRVVFNKIKKIEPENVTKIIGYLLLQDGSDQEMINLAMSPDVVIQDVIYKAKAE 60
Query: 58 LQQLAMKSASSPISPSMNSP--VNEVSFQF---NPFSSRPPVSPAGCRVPS-YWDHQVTN 111
L QLA+KSA++P+SPSMNSP V+E S QF +P SSR +SP RVPS YW+ QV +
Sbjct: 61 LNQLALKSAATPLSPSMNSPPAVSEFSSQFRAFSPVSSRSYLSPQHFRVPSTYWESQVAS 120
Query: 112 KNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAG 171
K++SDFV + Y DS+ ELQ+Q QFLSLEDQ+E VNLGN GF SD +YSDAAL + ARAG
Sbjct: 121 KHSSDFVPMTYQDSMTELQNQAQFLSLEDQLESVNLGNAGFPSDLFYSDAALGSFRARAG 180
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSP 231
RRY SLN E +K CHYFNKG+CKHGSNCRY+HG +S+SF + F D N+D +FSP
Sbjct: 181 RRYSSLN-ENSMKICHYFNKGYCKHGSNCRYFHGQISDSFPRTF-----DAINEDQIFSP 234
Query: 232 GSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTK 291
GSLEKLELEIIELLK+R+GNP+SIASLPMLYYEKYGKVLQA GYLTESQRHGKAGYSLTK
Sbjct: 235 GSLEKLELEIIELLKSRKGNPVSIASLPMLYYEKYGKVLQADGYLTESQRHGKAGYSLTK 294
Query: 292 LLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTF 351
LLARLKNS+RLIDRPHGQHAVILAED PKY+ENR +R+DPGPIV+GSRQIYLTFPAESTF
Sbjct: 295 LLARLKNSIRLIDRPHGQHAVILAEDVPKYMENRGDRNDPGPIVSGSRQIYLTFPAESTF 354
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411
TEDDVSNYFN +GPV+DVRIPCQQKRMFGFVTF SADTVK+ILAKGNPHFVC ARVLVKP
Sbjct: 355 TEDDVSNYFNKFGPVEDVRIPCQQKRMFGFVTFESADTVKIILAKGNPHFVCNARVLVKP 414
Query: 412 YREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFEL 471
YRE L+ YFS YVDMD+ELHS SRG ETSR +RKQLLEEQEQA EL
Sbjct: 415 YRENQSLL-----------XYFSSHYVDMDAELHSMSRGYETSRLLRKQLLEEQEQALEL 463
Query: 472 ERR-RLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDR 530
ERR RLAEL+ +RKP+ + YF MDG K+SED P Y + NGS D+
Sbjct: 464 ERRQRLAELR-IRKPVSHHSYFDYPMDGFKVSEDNFELP------YHVLDFINGSGNDDK 516
Query: 531 VKHVETNYTDQESEGLNLPDSPFANPIASGISTV 564
++H+ETNY DQ+S+GLNLP+SPFA+ I S IST+
Sbjct: 517 IRHIETNYADQDSQGLNLPESPFASAIPSSISTI 550
>gi|255587629|ref|XP_002534335.1| RNA binding protein, putative [Ricinus communis]
gi|223525472|gb|EEF28048.1| RNA binding protein, putative [Ricinus communis]
Length = 578
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/582 (61%), Positives = 436/582 (74%), Gaps = 23/582 (3%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDF+EST++V+NRI+KL+PENV+KIIGYLLLQ E+EMI LA SPD +I ++ KAK++
Sbjct: 1 MDFTESTKVVYNRIQKLEPENVSKIIGYLLLQDHSEREMIRLAFSPDNLIYSLITKAKSD 60
Query: 58 LQQLAMKSASSPISPSM--NSPVNEVSFQFNPFS---SRPPVSPAGCR--VPSYWDHQVT 110
L L + S+PISPS SPV+++ QF PFS + P SPA R +YWD QVT
Sbjct: 61 LG-LNKPALSAPISPSQVNTSPVSDIPLQFTPFSPASAHPISSPAASRRTASAYWDAQVT 119
Query: 111 NKN----NSDFVALGYSDSINE---LQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAAL 163
N DF + GYSD++ E LQ+ QFL+L+DQ E + N+ FSS+ +YS+ AL
Sbjct: 120 GDQQQVPNLDFGSPGYSDTVPEDYRLQNHMQFLTLDDQFEFAHSVNSDFSSNYFYSEPAL 179
Query: 164 SNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGL-VSESFTQMFGQTSPDG 222
G R RR SL E P+K CHYF+KG+CKHG+NCRY HG + E F+Q+F S D
Sbjct: 180 ---GPRTNRRSPSL-PEFPLKICHYFSKGYCKHGNNCRYVHGHPMPEGFSQIFSTKSNDF 235
Query: 223 FNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRH 282
ND+H+ SPGSLEKLE+E+ ELLK+RRG P+SIASLPM+YYEKYGK LQA GYLTESQRH
Sbjct: 236 SNDEHVVSPGSLEKLEMELAELLKSRRGMPVSIASLPMMYYEKYGKTLQAEGYLTESQRH 295
Query: 283 GKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIY 342
GKAGYSLTKLLARLKNS+R+IDRPHGQH+VIL ED PKYLE ER+DPG IV GSRQIY
Sbjct: 296 GKAGYSLTKLLARLKNSIRVIDRPHGQHSVILEEDVPKYLEYVGERNDPGGIVAGSRQIY 355
Query: 343 LTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV 402
LTFPAES FTE DVS YF+ +GPV DVRIPCQQKRMFGFVTF +TVK ILAKGNPH+V
Sbjct: 356 LTFPAESIFTEHDVSIYFSKFGPVQDVRIPCQQKRMFGFVTFIFVETVKQILAKGNPHYV 415
Query: 403 CGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLL 462
CGARVLVKPYREKS+L+DRK+ E+++ PMY S ++D DSELH + SR +RKQL+
Sbjct: 416 CGARVLVKPYREKSRLIDRKFSEKLQHPMYNSSHFIDGDSELHPMPTISDNSRLLRKQLM 475
Query: 463 EEQEQAFELERRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLN 522
EE E A E ERRRL E L K + + Y G MD LK+SE+ FPSAER +YL+ VLN
Sbjct: 476 EENEHALEFERRRLLEFHLGPKSLNHQSYLGCSMDELKLSEEHAEFPSAERFNYLLDVLN 535
Query: 523 NGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGISTV 564
NGS++ + + + TNY DQ+S+G+NLP+SPFA+PI SGISTV
Sbjct: 536 NGSSSEGKFRRISTNYNDQDSQGINLPESPFASPIRSGISTV 577
>gi|224129150|ref|XP_002320513.1| predicted protein [Populus trichocarpa]
gi|222861286|gb|EEE98828.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/576 (60%), Positives = 425/576 (73%), Gaps = 35/576 (6%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSEST++V+NRI++++PE V KIIGY+LLQ E+EMI LA SPD +I + KAK++
Sbjct: 1 MDFSESTKVVYNRIQEIEPEFVGKIIGYILLQNHGEREMIRLAFSPDNLIYATISKAKSD 60
Query: 58 LQQLAMKSASSPISPSM--NSPVNEVSFQFNP---FSSRPPVSPAGCRVP-SYWDHQVTN 111
L L +PISPS +PV++V QF P SS P SP R S+WD QVT+
Sbjct: 61 LG-LNKTPVPNPISPSQVNPAPVSDVHLQFIPNTAVSSHPISSPIKIRTAGSFWDAQVTD 119
Query: 112 KNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAG 171
LQ+Q QFL+ +DQ+E VN + FSS +Y + AL G R
Sbjct: 120 Y---------------RLQNQMQFLTSDDQLEFVN---SDFSSSYFYPEPAL---GPRTS 158
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGL-VSESFTQMFGQTSPDGFNDDHLFS 230
RR SL E PVK CHYFNKGFCKHG+NCRY+HG + ESF+Q+ S + ND+H S
Sbjct: 159 RRSPSL-PEFPVKICHYFNKGFCKHGNNCRYFHGHPMPESFSQILSLNSNEIANDEHFIS 217
Query: 231 PGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLT 290
PGSLEKLELE+ ELLK+RRG P+SIASLPM+YYEKYG++LQA GYLTESQRHGKAGYSLT
Sbjct: 218 PGSLEKLELELTELLKSRRGVPVSIASLPMMYYEKYGRMLQAEGYLTESQRHGKAGYSLT 277
Query: 291 KLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAEST 350
KLLARLKNS+RLIDRPHGQH+VIL ED PKYLE ER+DPG IV GSRQIYLTFPAEST
Sbjct: 278 KLLARLKNSIRLIDRPHGQHSVILTEDVPKYLEYAGERNDPGGIVAGSRQIYLTFPAEST 337
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
FTE DVSNYF+ +GPV DVRIPCQQKRMFGFVTF A+TVK IL+KGNPH VCGARVLVK
Sbjct: 338 FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILSKGNPHHVCGARVLVK 397
Query: 411 PYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFE 470
PYREKS+LVDRKY E+++ P ++S ++D DSELHS R C+ SR +RKQL+EE EQA E
Sbjct: 398 PYREKSRLVDRKYAEKIQHPFFYSQHFIDGDSELHSVPRVCDNSRLLRKQLMEEHEQALE 457
Query: 471 LERRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLN-FPSAERIDYLIGVLNNGSTTGD 529
LERRRL+E QL KP+ Y G MD K+SE++ + FPSAE +Y VLNNGST+ +
Sbjct: 458 LERRRLSEFQLAPKPLARHAYHGHSMDEFKLSEEQADQFPSAEHFNYWFDVLNNGSTSEE 517
Query: 530 RVKHVETNYTDQES-EGLNLPDSPFANPIASGISTV 564
+ +H TN ++Q+S +G+NLP+SPFA+ I GISTV
Sbjct: 518 KHRHTRTNCSEQDSNQGVNLPESPFASAIGKGISTV 553
>gi|225447594|ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Vitis vinifera]
Length = 572
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/591 (61%), Positives = 433/591 (73%), Gaps = 45/591 (7%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSEST++V+NRI+KL+PENV+KIIGYLLLQ E++MI A + D IQ ++ KAKAE
Sbjct: 1 MDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQCLINKAKAE 60
Query: 58 LQQLAMKSASSPISPSM--NSPVNEVSFQFNPFS---SRPPVSPAGCRVPSYWDHQVTNK 112
L + + SSPISP SPV+++ QF PFS +RP SP SYWD QV
Sbjct: 61 LGLSSKPAVSSPISPPQVNPSPVSDLPLQFTPFSPASARPFPSPRPGN--SYWDPQVNGD 118
Query: 113 NN-----SDFVALGYSDSINE---LQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALS 164
DFV GYSDS+ + LQSQ FL++EDQ+E N + FS YY++ AL+
Sbjct: 119 QQQVHKLGDFVPQGYSDSLPDDFRLQSQIHFLAMEDQLE--NSVGSEFSGSYYYAEQALN 176
Query: 165 NLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGL-VSESFTQMFGQTSPDGF 223
R RR SL E P+K CHYFNKGFCKHG++CRY+HG + ESF+Q+F + +
Sbjct: 177 ---TRISRRSPSL-PEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIFSPGANELP 232
Query: 224 NDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHG 283
NDDH+F PGSLEKLELE+ ELLK+RRG P+SIASLPM+YYEKYG+ LQA GYLTESQRHG
Sbjct: 233 NDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGYLTESQRHG 292
Query: 284 KAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYL 343
KAGYSLTKLLARLKNS+RLIDRPHGQH+VILAED PKY+E ERSDPG IV S+QIYL
Sbjct: 293 KAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIVGSSKQIYL 352
Query: 344 TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC 403
TFPA+STFTE DVSNYFN +GPV DVRIPCQQKRMFGFVTF A+TVK IL KGNPH++C
Sbjct: 353 TFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILTKGNPHYIC 412
Query: 404 GARVLVKPYREK--SKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRK-Q 460
GARVLVKPYREK S+ VDR+ + PMY+SP ++D DSEL S R C+ SR +RK Q
Sbjct: 413 GARVLVKPYREKASSRTVDRR-----QHPMYYSPHFIDEDSELQSIPRVCDNSRLLRKQQ 467
Query: 461 LLEEQEQAFELERRRLAELQLVRKPMPNPPYFGGYMDGLKISED-----RLNFPSAERID 515
L+EE EQA ELERRRL+ELQL P PYFG MD K D + FPSAER++
Sbjct: 468 LMEEHEQALELERRRLSELQLT--PKTAHPYFGYSMDEFKQHSDAAHAEQAEFPSAERLN 525
Query: 516 YLIGVLNNGSTTGDRVKHVETNYTDQE-SEGLNLPDSPFANPIASGISTVT 565
YL+ VLNNGST+ DR TNY +QE S+GLNLP+SPFA+PI + ISTVT
Sbjct: 526 YLLEVLNNGSTSEDR----STNYNEQESSQGLNLPESPFASPIRNSISTVT 572
>gi|356527124|ref|XP_003532163.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Glycine max]
Length = 555
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 321/577 (55%), Positives = 409/577 (70%), Gaps = 36/577 (6%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE TRIVF+++ + +PEN TKIIGYLLLQ EQ+M+ LA PD +I++V YKA+ E
Sbjct: 1 MDISEYTRIVFDKLHRFEPENATKIIGYLLLQDHGEQDMVKLASLPDHLIRDVAYKARTE 60
Query: 58 LQQLAMKSASSPISPSMNSP--VNEVSFQFNPFSSRPP---VSPAGCRVPS-YWDHQVTN 111
LQ+LA +SA PIS NS ++ +S +P S P SPA +V S YWD Q +
Sbjct: 61 LQRLASRSAIQPISLPTNSQQCLSHLSV-ISPTSVITPGTLTSPASFQVQSPYWDPQSAS 119
Query: 112 KNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAA-LSNLGARA 170
N++F+ALGY DSI+ELQ QT SLE+ M+ +N G G ++D Y DA+ SNLG +
Sbjct: 120 NTNAEFMALGYVDSISELQKQTPLFSLENHMDTMNSGTAGIANDYYGLDASSASNLGGKN 179
Query: 171 GRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGL-VSESFTQMFGQTSPDGFNDDHLF 229
GR E PVKTCHYFNKGFCKHG++CRYYH + F+ M+G D FNDD +
Sbjct: 180 GR------FEFPVKTCHYFNKGFCKHGNSCRYYHEQGAPDMFSHMYGN---DIFNDDQVI 230
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
SPGSL +LE EI+ELLK ++G ISIASLPM YY++Y KVLQA GYLTESQRHGK+GYSL
Sbjct: 231 SPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSL 290
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAES 349
TKLLARLKNS+RLIDRPHGQH+V+LAEDAPK+ N + D ++ SRQIYLTFPA+S
Sbjct: 291 TKLLARLKNSIRLIDRPHGQHSVVLAEDAPKF----NGKVDYAKYISASRQIYLTFPADS 346
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
TF+E DVSNYF+T+G V+DVRIP Q++RMFGFVTF +TVK+IL KGNPH+VC +RVLV
Sbjct: 347 TFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLV 406
Query: 410 KPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQ-A 468
KPY+EK KL+ RK +R+E Y+SP YVD+D+E S R C RF+R+QL+ +QE+ A
Sbjct: 407 KPYKEKPKLMLRKNSDRIEHSAYYSPHYVDIDTEPTSIPRSCRKPRFLRRQLINQQEEAA 466
Query: 469 FELERRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTG 528
E +R+R AELQL +K + P+ G MDGLK+S++ N SAE +
Sbjct: 467 LEFQRQRFAELQLAQKSLSTSPHLGFNMDGLKVSDEHFNVQSAEP---------HSHAPN 517
Query: 529 DRVKHVETNYTDQES-EGLNLPDSPFANPIASGISTV 564
D + + NYTD++S +GLNLPDSPFA P+ SGIS V
Sbjct: 518 DIAGYTDNNYTDEDSNQGLNLPDSPFAFPVDSGISAV 554
>gi|356569657|ref|XP_003553014.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Glycine max]
Length = 552
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/574 (54%), Positives = 408/574 (71%), Gaps = 35/574 (6%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE TRIVF+++++ +PE+ TKIIGYLLLQ EQEM+ LA PD +I+ V YKA+ E
Sbjct: 1 MDISEYTRIVFDKLQRFEPEHTTKIIGYLLLQDHGEQEMVKLASLPDHLIRGVAYKARTE 60
Query: 58 LQQLAMKSASSPISPSMNSP--VNEVSFQFNPFS---SRPPVSPAGCRVPS-YWDHQVTN 111
LQ+LA +SA PIS +NS +N +S +P S P SPA +V S YWD Q +
Sbjct: 61 LQRLAARSAIQPISLPINSQQCLNHLSV-ISPTSVITPGTPTSPASFQVQSPYWDPQSAS 119
Query: 112 KNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAA-LSNLGARA 170
N++F+ALGY DSI+E Q QT SL++ M+ +N G G ++D Y DA+ +SNLG +
Sbjct: 120 NTNAEFMALGYLDSISEFQKQTPLFSLDNHMDTMNSGTAGIANDYYGLDASSVSNLGGKN 179
Query: 171 GRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGL-VSESFTQMFGQTSPDGFNDDHLF 229
GRR+ E PVKTCHYFNKGFCKHG++CRYYH V + F+ M+G D FNDD +
Sbjct: 180 GRRF-----EFPVKTCHYFNKGFCKHGNSCRYYHEHGVPDMFSHMYGN---DTFNDDPVI 231
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
SPGSL +LE EI+ELLK ++G ISIASLPM YYE+Y KVLQA GYLTESQRHGK+GYSL
Sbjct: 232 SPGSLAQLESEIVELLKLKKGGSISIASLPMAYYERYKKVLQAEGYLTESQRHGKSGYSL 291
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAES 349
TKLLARLKNS+RLIDRPHGQH+V+LAEDAPK+ N + D G ++ SRQIYLTFPA+S
Sbjct: 292 TKLLARLKNSIRLIDRPHGQHSVVLAEDAPKF----NGKVDYGKYISASRQIYLTFPADS 347
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
TF+E DVS YF+T+G V+DVRIP Q++RMFGFVT +TVK+IL KGNPH+VC +RVLV
Sbjct: 348 TFSEGDVSYYFSTFGKVEDVRIPSQERRMFGFVTLNDPETVKVILDKGNPHYVCESRVLV 407
Query: 410 KPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQ-A 468
KPY+EK K + RK+ +R+E Y+SP YVD+D+E S R RF+R+ L+E+QE+ A
Sbjct: 408 KPYKEKPKFMPRKHSDRIEHSAYYSPHYVDIDTEPTSIPRSFRNPRFLRRLLIEKQEEAA 467
Query: 469 FELERRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTG 528
FE +RRR AELQ+ +K + P+ G DG K+S++ N SAE ++
Sbjct: 468 FEFQRRRFAELQMAQKSLSTSPHLGFNTDGFKVSDEHFNVQSAE---------SHSHALN 518
Query: 529 DRVKHVETNYTDQES-EGLNLPDSPFANPIASGI 561
D+ + + N TD++S +GLNLPDSPFA P+ SG
Sbjct: 519 DKAGYTDNNCTDEDSNQGLNLPDSPFAFPVDSGF 552
>gi|296084999|emb|CBI28414.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 340/578 (58%), Positives = 406/578 (70%), Gaps = 79/578 (13%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSEST++V+NRI+KL+PENV+KIIGYLLLQ E++MI A + D IQ ++ KAKAE
Sbjct: 14 MDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQCLINKAKAE 73
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + + SSPISP P V+P+ PS
Sbjct: 74 LGLSSKPAVSSPISP-------------------PQVNPS----PS-------------- 96
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSL 177
SQ FL++EDQ+E N + FS YY++ AL+ R RR SL
Sbjct: 97 ------------MSQIHFLAMEDQLE--NSVGSEFSGSYYYAEQALN---TRISRRSPSL 139
Query: 178 NAELPVKTCHYFNKGFCKHGSNCRYYHGL-VSESFTQMFGQTSPDGFNDDHLFSPGSLEK 236
E P+K CHYFNKGFCKHG++CRY+HG + ESF+Q+F + + NDDH+F PGSLEK
Sbjct: 140 -PEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIFSPGANELPNDDHVFPPGSLEK 198
Query: 237 LELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARL 296
LELE+ ELLK+RRG P+SIASLPM+YYEKYG+ LQA GYLTESQRHGKAGYSLTKLLARL
Sbjct: 199 LELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARL 258
Query: 297 KNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDV 356
KNS+RLIDRPHGQH+VILAED PKY+E ERSDPG IV S+QIYLTFPA+STFTE DV
Sbjct: 259 KNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIVGSSKQIYLTFPADSTFTEQDV 318
Query: 357 SNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK- 415
SNYFN +GPV DVRIPCQQKRMFGFVTF A+TVK IL KGNPH++CGARVLVKPYREK
Sbjct: 319 SNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILTKGNPHYICGARVLVKPYREKA 378
Query: 416 -SKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRK-QLLEEQEQAFELER 473
S+ VDR+ + PMY+SP ++D DSEL S R C+ SR +RK QL+EE EQA ELER
Sbjct: 379 SSRTVDRR-----QHPMYYSPHFIDEDSELQSIPRVCDNSRLLRKQQLMEEHEQALELER 433
Query: 474 RRLAELQLVRKPMPNPPYFGGYMDGLKISED-----RLNFPSAERIDYLIGVLNNGSTTG 528
RRL+ELQL P PYFG MD K D + FPSAER++YL+ VLNNGST+
Sbjct: 434 RRLSELQLT--PKTAHPYFGYSMDEFKQHSDAAHAEQAEFPSAERLNYLLEVLNNGSTSE 491
Query: 529 DRVKHVETNYTDQE-SEGLNLPDSPFANPIASGISTVT 565
DR TNY +QE S+GLNLP+SPFA+PI + ISTVT
Sbjct: 492 DR----STNYNEQESSQGLNLPESPFASPIRNSISTVT 525
>gi|225460759|ref|XP_002276183.1| PREDICTED: zinc finger CCCH domain-containing protein 18 [Vitis
vinifera]
gi|297737542|emb|CBI26743.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 322/572 (56%), Positives = 395/572 (69%), Gaps = 36/572 (6%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSEST +VFNRI+KL+PENV+KIIGYLL++ + EMI LA PD I+ ++ K E
Sbjct: 1 MDFSESTAVVFNRIQKLEPENVSKIIGYLLVKGFSKGEMIRLAFGPDKAIRMIIEGVKIE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + + PP+SP+ W + + +
Sbjct: 61 LGLIPNPPSPI-------------------SPHFPPLSPST----GSWFPSSSPSPVNRY 97
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSL 177
+ + Q+Q L LE+Q+E VN G S D YY + A+ NL R G R +
Sbjct: 98 LQHATEQLPKDYSLQSQPLGLEEQLEQVNPAILGVSGDYYYPETAVENLSVRTGPR-SLI 156
Query: 178 NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKL 237
+E PVK CHYFNKGFCKHG+NCRY H V F ++ + D NDDH+FSPGS+EKL
Sbjct: 157 GSEFPVKVCHYFNKGFCKHGNNCRYLHAQV---FPEVLSPIANDLANDDHIFSPGSIEKL 213
Query: 238 ELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLK 297
ELE+ ELLK+RRGNP+SIASLPM+YYE+YG+ LQA GYLTESQRHGKAGYSLTKLLARL+
Sbjct: 214 ELELTELLKSRRGNPVSIASLPMMYYERYGRGLQAEGYLTESQRHGKAGYSLTKLLARLR 273
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVS 357
++RLIDRPHGQH+VILAED PKY+E+R+ERSDPGPIV+GSRQIYLTFPAESTFTE+DVS
Sbjct: 274 -TIRLIDRPHGQHSVILAEDVPKYMESRSERSDPGPIVSGSRQIYLTFPAESTFTEEDVS 332
Query: 358 NYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
+YF+T+G V+DVRIPCQQKRMFGFVTF S+DTVK ILAKG+PH+VCGARVLVKPYREK +
Sbjct: 333 DYFSTFGLVEDVRIPCQQKRMFGFVTFDSSDTVKSILAKGSPHYVCGARVLVKPYREKPR 392
Query: 418 LVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQE--QAFELERRR 475
DRKY E+ ES MY+ QY DMDSELH RG ETSR +RKQ++EEQE Q E E RR
Sbjct: 393 TGDRKYLEKFESSMYYPLQYADMDSELHMMPRGMETSRLLRKQIMEEQEFAQDLEFETRR 452
Query: 476 LAELQLVRKPMPNPPYFGGYMDGLKISEDRLN---FPSAERIDYLIGVLNNGSTTGDRVK 532
L++LQL R P+ N + G +D LK+ E N FP+ +Y + V NNGST+ D+
Sbjct: 453 LSKLQLARNPLANQLHHGYSLDELKVLEAHANHSKFPTVVHSNYPLDVSNNGSTSDDKPW 512
Query: 533 HVETNYTDQESEGLNLPDSPFANPIASGISTV 564
N D +S GL LPDSPFA PI S IST+
Sbjct: 513 RAVNNPIDHKSSGLELPDSPFAFPIGSSISTI 544
>gi|356552675|ref|XP_003544688.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Glycine max]
Length = 547
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 304/565 (53%), Positives = 399/565 (70%), Gaps = 33/565 (5%)
Query: 7 TRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAELQQLAM 63
T IVF++I+K +PEN KIIGYL Q EQEM LA PD I+EV +A+ ELQ+LA
Sbjct: 6 TSIVFDKIQKFEPENARKIIGYLFFQGHGEQEMAKLASCPDYFIREVAVQARKELQRLAA 65
Query: 64 KSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDFVALGYS 123
K +S ++N P + +S + S R P SP P YWD Q N DF+ + Y
Sbjct: 66 KPDMLAMSLTVN-PQHGLS-DLSVISPRTPTSPNFQVPPPYWDPQSAGNVNPDFMGMNYL 123
Query: 124 DSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPV 183
DSI ELQ QTQ L+LE+Q++ V G G ++D Y DA+ +NLG +AGRR+ +E P+
Sbjct: 124 DSIVELQKQTQMLTLENQIDAVKTGTGGIANDYYGLDASAANLGGKAGRRF----SEFPM 179
Query: 184 KTCHYFNKGFCKHGSNCRYYHG-LVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEII 242
K CHYFNKGFCKHG++CR+YHG +V E+F+QM+G D ++D + SPGSL +LE EII
Sbjct: 180 KICHYFNKGFCKHGTSCRFYHGQVVPENFSQMYGN---DAISEDQVISPGSLAQLESEII 236
Query: 243 ELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRL 302
ELL+ + G P+SIASLPM YY+KY KVLQA GYLTESQRHGK+GYSLTKLLARL NS+RL
Sbjct: 237 ELLRTK-GGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLNNSIRL 295
Query: 303 IDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNT 362
I RPHGQH+V+LAEDAP ++ + D ++ SRQIYLTFPA+STFTEDDVSNYFNT
Sbjct: 296 IGRPHGQHSVVLAEDAPTQMQ----KGDFARNISASRQIYLTFPADSTFTEDDVSNYFNT 351
Query: 363 YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRK 422
+GPV DVRIP QQ+RMFGFVTF ++TVK +L KGNPH V G+RVLVKPY+EK+K+ +RK
Sbjct: 352 FGPVADVRIPNQQRRMFGFVTFVHSETVKTVLDKGNPHCVRGSRVLVKPYQEKAKVNERK 411
Query: 423 YQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRK--QLLEEQEQ--AFELERRRLAE 478
Y +R+E P+ +SP YVD+D+EL+S R R IR+ QL+EE+EQ + EL++R LA+
Sbjct: 412 YTDRIEHPVCYSPHYVDIDTELNSIPRSFGNHRSIRRQLQLIEEEEQGRSLELKKRSLAQ 471
Query: 479 LQLVRKPMPNPPYFGGYMDGLKISEDRLNF-PSAERIDYLIGVLNNGSTTGDRVKHVETN 537
L +K + P+FG MD +IS+D NF P+ E + + + +H ++N
Sbjct: 472 LPFAQKYFFSSPHFGFSMDESRISDDHFNFQPAEESFSFPLHA---------KSRHTDSN 522
Query: 538 YTDQES-EGLNLPDSPFANPIASGI 561
Y+D++S +GLNLPDSPFA P+ SG+
Sbjct: 523 YSDEDSNQGLNLPDSPFAFPLDSGM 547
>gi|357494859|ref|XP_003617718.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355519053|gb|AET00677.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
Length = 547
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 314/572 (54%), Positives = 396/572 (69%), Gaps = 44/572 (7%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE TRIVF++I+K +PEN KIIGYLLLQ EQEM LA PD +I EVV+KA
Sbjct: 1 MDISEYTRIVFDKIQKFEPENARKIIGYLLLQDNGEQEMARLASCPDHIIGEVVFKA--- 57
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPS-YWDHQVTNKNNSD 116
LQ LA+ S PI P +P +S F + P SP +VPS YWD Q T+ N +
Sbjct: 58 LQMLAVNSTMMPIPPPNVNPQQGLSH----FPALSPSSPLNFQVPSSYWDPQSTSNANPE 113
Query: 117 FVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYS--DAALSNLGARAGRRY 174
F + Y DS+ ELQ QTQ LSLE+ ++HVN G G + Y + D++ N G +A +R+
Sbjct: 114 FTGMNYMDSLVELQKQTQLLSLENHLDHVNTGTRGLVVNEYNNGLDSSAVNFGGKATKRF 173
Query: 175 -QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLV-SESFTQMFGQTSPDGFNDDHLFSPG 232
S +E P+K CHYF+KG+C+HG NCRY+HG V ESF+ M G + N+D + SPG
Sbjct: 174 SNSSMSEFPLKICHYFSKGYCRHGGNCRYFHGQVPHESFSHMHGNND-NTSNEDPVISPG 232
Query: 233 SLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKL 292
SL ++E EIIELLK RRGNP+SIASLPM YY+KY KVLQA GYLTESQRHGK+GYSLTKL
Sbjct: 233 SLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAHGYLTESQRHGKSGYSLTKL 292
Query: 293 LARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFT 352
LARL NS+RLIDRPHGQHAV+LAEDAPKY+ ++ D ++ SRQIYLTFPA+STFT
Sbjct: 293 LARL-NSIRLIDRPHGQHAVVLAEDAPKYI----QKGDSVQNISASRQIYLTFPADSTFT 347
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412
E+DV+ YFN +G V+DVRIPCQQKRMFGFVTFA +TV+MIL KGNPH+V G+RVLVKPY
Sbjct: 348 EEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPY 407
Query: 413 REKSKLVDRKYQERMESPMYFSPQY------VDMDSELHSFSRGCETSRFIRKQLLEEQE 466
REK+K+V ER+ES +F Y + L+S R R + +QL+EEQE
Sbjct: 408 REKTKVV-----ERIES--WFVGSYDPTSHGTSIVLRLYSVPRSYGNHRSLSRQLMEEQE 460
Query: 467 QAFELERRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGST 526
QAFEL+RRRLA+LQ R+P P P+FG MD L++ +D NF + E +++ LNN +
Sbjct: 461 QAFELQRRRLAQLQFTRRPFPISPHFGFPMDALRVPDDHFNFQAVEPLNH---ALNNNT- 516
Query: 527 TGDRVKHVETNYTDQES-EGLNLPDSPFANPI 557
K+ +T+ + S EGLNLPDSPFA P+
Sbjct: 517 -----KNTDTDSSGGNSNEGLNLPDSPFAFPM 543
>gi|147832355|emb|CAN64426.1| hypothetical protein VITISV_022456 [Vitis vinifera]
Length = 556
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/575 (53%), Positives = 378/575 (65%), Gaps = 61/575 (10%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSEST +VFNRI+KL+PENV+KIIGYLL++ + EMI LA PD I+ ++ K E
Sbjct: 1 MDFSESTAVVFNRIQKLEPENVSKIIGYLLVKGFSKGEMIRLAFGPDKAIRMIIEGVKIE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + + PP+SP+ W + + +
Sbjct: 61 LGLIPNPPSPI-------------------SPHFPPLSPST----GSWFPSSSPSPVNRY 97
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSL 177
+ + Q+Q L LE+Q+E VN G S D YY + A+ NL R G R +
Sbjct: 98 LQHATEQLPKDYSLQSQPLGLEEQLEQVNPAILGVSGDYYYPETAVENLSVRTGPR-SLI 156
Query: 178 NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKL 237
+E PVK CHYFNKGFCKHG+NCRY H V F ++ + D NDDH+FSPGS+EKL
Sbjct: 157 GSEFPVKVCHYFNKGFCKHGNNCRYLHAQV---FPEVLSPIANDLANDDHIFSPGSIEKL 213
Query: 238 ELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLK 297
ELE+ ELLK+RRGNP+SIASLPM+YYE+YG+ LQA GYLTESQRHGKAGYSLTKLLARL+
Sbjct: 214 ELELTELLKSRRGNPVSIASLPMMYYERYGRGLQAEGYLTESQRHGKAGYSLTKLLARLR 273
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVS 357
++RLIDRPHGQH+VILAED PKY+E+R+ERSDPGPIV+GSRQIYLTFPAESTFTE+DVS
Sbjct: 274 -TIRLIDRPHGQHSVILAEDVPKYMESRSERSDPGPIVSGSRQIYLTFPAESTFTEEDVS 332
Query: 358 NYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
+YF+T+G V+DVRIPCQQKRMFGFVTF S+DTVK ILAKG+PH+VCGARVLVKPYREK +
Sbjct: 333 DYFSTFGLVEDVRIPCQQKRMFGFVTFDSSDTVKSILAKGSPHYVCGARVLVKPYREKPR 392
Query: 418 LVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQE--QAFELERRR 475
DRKY E+ ES MY+ QY DMDSELH RG ETSR +RKQ++EEQE Q E E RR
Sbjct: 393 TGDRKYSEKFESSMYYPLQYADMDSELHMMPRGMETSRLLRKQIMEEQEFAQDLEFETRR 452
Query: 476 LAELQLVRKPMPNPPYFGGYMDGLKISE----------------------------DRLN 507
L++LQL R P+ N + G +D LK+ E +
Sbjct: 453 LSKLQLARNPLANQLHHGYSLDELKVLEAIIPSFWNCSLSSDLTLFLGLVQTIAHANHSK 512
Query: 508 FPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQE 542
FP+ +Y + V NNGST+ D+ N D +
Sbjct: 513 FPTVVHSNYPLDVSNNGSTSDDKPWRAVNNPIDHK 547
>gi|356499429|ref|XP_003518543.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Glycine max]
Length = 541
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/560 (53%), Positives = 387/560 (69%), Gaps = 35/560 (6%)
Query: 7 TRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAELQQLAM 63
TRIVF +I+K +PE+ KIIGYL Q EQEM LA PD I EVV +AK ELQ+LA
Sbjct: 6 TRIVFEKIQKFEPEHARKIIGYLFFQGHGEQEMAKLASCPDYFICEVVVQAKKELQRLAA 65
Query: 64 KSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDFVALGYS 123
K PIS ++N P +S + S R P SP P YWD Q N DF+ + Y
Sbjct: 66 KPDMLPISRTVN-PQQGLS-DLSVISPRTPTSPNFQMPPPYWDPQSAANINPDFMGMNYL 123
Query: 124 DSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPV 183
DSI ELQ QTQ L+LE+Q++ V G G ++D Y DA+ +NLG GRR+ +E P+
Sbjct: 124 DSIVELQKQTQMLTLENQIDAVKTGTGGIANDHYGLDASAANLG---GRRF----SEFPM 176
Query: 184 KTCHYFNKGFCKHGSNCRYYHG-LVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEII 242
K CHYFNKGFCKHG++CR+YHG +V E+F+QM D +D + SPGSL +LE EII
Sbjct: 177 KMCHYFNKGFCKHGTSCRFYHGQVVPENFSQMHAN---DAIGEDQVISPGSLAQLESEII 233
Query: 243 ELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRL 302
ELL+A+ G P+SIASLPM YY+KY KVLQA GYLTESQRHGK+GYSLTKLLARLKNS++L
Sbjct: 234 ELLRAK-GGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIQL 292
Query: 303 IDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNT 362
I RPHGQH+V+LAED+P ++ + D ++ S QIYLTFPA+STFTEDDVSNYFNT
Sbjct: 293 IGRPHGQHSVVLAEDSPTQMQ----KGDFARNISASYQIYLTFPADSTFTEDDVSNYFNT 348
Query: 363 YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRK 422
+GPV DVRIP QQ+RMFGFVTF ++TVK +L KGNPH V G+RVLVKPYREK+K+ +RK
Sbjct: 349 FGPVADVRIPNQQRRMFGFVTFVHSETVKSVLDKGNPHCVRGSRVLVKPYREKAKVNERK 408
Query: 423 YQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQ---LLEEQEQAFELERRRLAEL 479
Y +R+E P+ +SP YVDMD+EL+S R + IR+ + +E+++ +R LA+L
Sbjct: 409 YTDRIEHPICYSPHYVDMDAELNSIPRSFGSHGSIRRHLQLIEQEEQEQALERQRSLAQL 468
Query: 480 QLVRKPMPNPPYFGGYMDGLKISEDRLNF-PSAERIDYLIGVLNNGSTTGDRVKHVETNY 538
+K + P+FG MD +IS+D NF P+ E + + V + +H ++NY
Sbjct: 469 HFAQKSFFSSPHFGFSMDESRISDDHFNFQPAEESFSFPLHV---------KSRHTDSNY 519
Query: 539 TDQES-EGLNLPDSPFANPI 557
+D++S EGLNLPDSPFA P+
Sbjct: 520 SDEDSNEGLNLPDSPFAFPL 539
>gi|357459965|ref|XP_003600264.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355489312|gb|AES70515.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
Length = 539
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 282/575 (49%), Positives = 393/575 (68%), Gaps = 58/575 (10%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE TRIV ++I++ +PE+ TKIIGYLL+Q EQE+ LA PD +I+EV KA+ E
Sbjct: 11 MDISECTRIVLDKIQRFEPEHATKIIGYLLMQDNGEQEIAKLASFPDNLIREVALKARTE 70
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LQ++A +S IS +SP SFQ + SP Y++H T+ +F
Sbjct: 71 LQKMATRSV---ISSGNSSPA---SFQVH--------SP-------YYNHGNTSP---EF 106
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCY-----YSDAALSNLGARAGR 172
+ +G E Q+ T E+ ++ +T + DCY Y+ +A++NL + +
Sbjct: 107 MTIG----TTEHQTHTALFGSENHHHVDSVNSTTDNYDCYNYYLEYA-SAVANLNGKISK 161
Query: 173 RYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHG--LVSESFTQMFGQTSPDGFNDDHLFS 230
R+ ++ E P KTCHYF+KG+C+HG++CR+YH VS+ + M+G + ND+ S
Sbjct: 162 RFSNM-TEFPFKTCHYFSKGYCRHGNSCRFYHHGQAVSDIVSHMYGNDA--AANDEQAIS 218
Query: 231 PGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLT 290
PGSL +LE EI++LLK +RGNPISIASLPM YY+KY KVLQA GYL ESQRHGK+GY+LT
Sbjct: 219 PGSLAQLESEIVDLLK-QRGNPISIASLPMAYYDKYKKVLQAEGYLAESQRHGKSGYNLT 277
Query: 291 KLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAEST 350
KLL RL+NS+RLIDRPHGQHAV+LAEDAPK++ + ++ ++ S+QIYLTFPA+ST
Sbjct: 278 KLLIRLRNSIRLIDRPHGQHAVVLAEDAPKFMGKADCQN-----ISASQQIYLTFPADST 332
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
F+E+DVSNYF T+G V+DVRIPCQQ+RMFGFVTF +TVKMIL KGNPH+V G+RVLVK
Sbjct: 333 FSEEDVSNYFGTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILDKGNPHYVRGSRVLVK 392
Query: 411 PYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFE 470
PY+EK KL+DRKY R+E + +SP+Y D+D+E+ S R C R++ + LLEEQ++ FE
Sbjct: 393 PYKEKPKLIDRKYPYRVEHHVCYSPRYADIDAEIASSPRSCGNPRYLTRLLLEEQDRIFE 452
Query: 471 LERRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDR 530
L+RRRLA LQ+ +K + +PP+FG M+ ++S+D N + E YL ++
Sbjct: 453 LQRRRLALLQIAQKSLSSPPHFGINMNASRVSDDHFNVQATESFSYL---------QNEQ 503
Query: 531 VKHVETNYTDQE-SEGLNLPDSPFANPIASGISTV 564
++ + N +D++ SEGLNLPDSPF+ I +GIS +
Sbjct: 504 AEYTDANNSDKDSSEGLNLPDSPFSFRIDTGISAM 538
>gi|449463743|ref|XP_004149591.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Cucumis sativus]
gi|449518519|ref|XP_004166289.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like
[Cucumis sativus]
Length = 528
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 277/530 (52%), Positives = 366/530 (69%), Gaps = 47/530 (8%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
M+FS TR VF+RI ++DP+NV KIIG+LLL + QEM LA++ + I++VV AK E
Sbjct: 1 MEFSAHTRTVFHRINQIDPDNVMKIIGFLLLHDNGDQEMARLALANESHIEKVVMLAKTE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQ-VTNKNNSD 116
L QL SM PV+ ++ + + +P SP G W+ Q +TNK+ D
Sbjct: 61 LHQLR----------SMPVPVSPLAIR----NRQPSTSPPG------WEQQQLTNKHTPD 100
Query: 117 FVALGYSDS-INELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQ 175
+++LGY DS + +LQ+ LED ME N G + F DC Y+D L++ R R Y
Sbjct: 101 YISLGYHDSSMYDLQNAANLFCLEDHMEQSNSGLSSF--DCSYADNMLNSFSTRNTRHYS 158
Query: 176 SLNAELPVKTCHYFNKGFCKHGSNCRYYH-GLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
++ P +TCHY+NKGFCKHG++CRY H LV S + ++ S NDDH+F PGSL
Sbjct: 159 NVPDFQP-RTCHYYNKGFCKHGNSCRYLHSNLVPGSLSHLYNTNS--NVNDDHVFRPGSL 215
Query: 235 EKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLA 294
E+LE EI+ELLK+RRG+PISIASLPM+YYEKYGKVLQA GYLTESQRHGK+G+SLTKLL
Sbjct: 216 ERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLT 275
Query: 295 RLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTED 354
RLKNS+++IDRPHGQHAVILAEDAPK++++R +R+DPGPIV+ +RQIY+TFPA+STFTED
Sbjct: 276 RLKNSIQVIDRPHGQHAVILAEDAPKFMDHRKDRNDPGPIVSSARQIYMTFPADSTFTED 335
Query: 355 DVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414
DVS+YF YG V+DVRIPCQQ+RMFGFVTF S +TVK+IL+ + H +CGARVLVKPYRE
Sbjct: 336 DVSDYFRQYGMVEDVRIPCQQRRMFGFVTFHSMETVKLILSDDSEHLICGARVLVKPYRE 395
Query: 415 KSKLVDRKYQERMESPMYFSPQYVDMDSE-LHSFSRGCETSRFIRKQLLEEQEQAFELER 473
KSKL++R YF+ Y ++SE LHS RG + + + +EEQ+Q
Sbjct: 396 KSKLLER---------YYFASHYNSLESEQLHSIGRGYDFPPTMLRLRMEEQQQQQRELE 446
Query: 474 RRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSA-ERIDYLIGVLN 522
R L+E+ LV+K + N PYF M+ LK+ P A E ++L+ +LN
Sbjct: 447 RSLSEMTLVQKSVVNQPYFSYQMNELKVP-----VPEATESFEHLMDILN 491
>gi|15224480|ref|NP_178588.1| zinc finger CCCH domain-containing protein 18 [Arabidopsis
thaliana]
gi|75337298|sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18;
Short=AtC3H18
gi|4755187|gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana]
gi|330250805|gb|AEC05899.1| zinc finger CCCH domain-containing protein 18 [Arabidopsis
thaliana]
Length = 536
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 283/587 (48%), Positives = 364/587 (62%), Gaps = 73/587 (12%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQ----EMIHLAMSPDVVIQEVVYKAKA 56
M+F+ES +V RI++L+PEN KI GYLLL ++ +MI LA PD V+ V+ K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 57 ELQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRV--PSYWDHQVTNKNN 114
EL + + S P S + +P +F F+ P+S + +W++
Sbjct: 61 ELARNSHHYHSPP-SDHIPTP------KFGSFTGSSPLSVSVSPPMKTGFWEN------- 106
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSD--CYYSDAALSNLGARAGR 172
S ++ LQ+ QFL+ ED + N FS + C L R R
Sbjct: 107 --------STEMDTLQNNLQFLNFEDPLTSPEFSNGFFSQERQC---------LPLRTSR 149
Query: 173 RYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLV---SESFTQMFGQTSPDGFNDDHLF 229
R SL E PVK CHYFNKGFCKHG+NCRY+HG + ESF QMF + + +++H+
Sbjct: 150 RSPSL-PEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNN-NLSDEEHVV 207
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
SP SLEKLE EIIELLK RRG PISIASLPM+YYEKYG+ LQA GYLTESQRHGKAGYSL
Sbjct: 208 SPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSL 267
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAES 349
TKLLARLKN++RL+DRPHGQH+VILAEDA K++E ER++ G I+ GSRQIYLTFPAES
Sbjct: 268 TKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAES 327
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
+FTE DVS YF +YG V+DVRIPCQQKRM+GFVTFAS++TVK ILAKGNPHF+C ARVLV
Sbjct: 328 SFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLV 387
Query: 410 KPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSF-SRGCETSRFIRKQLLEEQEQA 468
KPYREKS+ + M + ++++ D E+++ R E+SR +RK L E EQ+
Sbjct: 388 KPYREKSRSSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSR-MRKPFLSEPEQS 446
Query: 469 FELERRRLAELQLVRKPMP-NPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTT 527
V K +P N Y G D K++ + AER+ YL+ LN T
Sbjct: 447 -------------VSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERLSYLLDYLN----T 489
Query: 528 GDRVKHVETNYTDQ---------ESEGLNLPDSPFANPIASGISTVT 565
D V ++ TNY D +S+ LNLP+SPF++ ISTVT
Sbjct: 490 EDNVMNITTNYRDNDRRTHCESLDSQVLNLPESPFSSLSGKEISTVT 536
>gi|297835822|ref|XP_002885793.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297331633|gb|EFH62052.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 525
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/587 (47%), Positives = 353/587 (60%), Gaps = 84/587 (14%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE----QEMIHLAMSPDVVIQEVVYKAKA 56
M+F+ES +V NRI++L+PEN +KIIGYLLL + ++MI LA PD V++ V+ K
Sbjct: 1 MNFTESMNVVHNRIQQLEPENASKIIGYLLLMQDNGNRDMIRLAFCPDSVMRSVINCVKY 60
Query: 57 ELQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRV--PSYWDHQVTNKNN 114
EL + A S P S + P + +F F+ P+S + +W++
Sbjct: 61 ELAKNAHHYHSPP---SDHIPTH----KFGSFTGSSPLSVSVSPPVKTGFWEN------- 106
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSD--CYYSDAALSNLGARAGR 172
S ++ LQ+ QFL+ ED + N FS D C L R R
Sbjct: 107 --------STEMDTLQNNLQFLNFEDSLTSPEFSNGFFSQDRQC---------LPLRTSR 149
Query: 173 RYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLV---SESFTQMFGQTSPDGFNDDHLF 229
R SL E PVK CHYFNKGFCKHG+NCRY+HG + ESF MF + + ++H+
Sbjct: 150 RSPSL-PEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFALMFNPNN-NLSEEEHVV 207
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
SP SLEKLE EIIELLKARRG PISIASLPM+Y E YG+ LQA GYLTESQRHGKAGYSL
Sbjct: 208 SPVSLEKLEGEIIELLKARRGAPISIASLPMMYSETYGRTLQAEGYLTESQRHGKAGYSL 267
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAES 349
TKLLARLKN++RLIDRPHGQH+VILAEDA K++E ER++ G I+ GSRQIYLTFPAES
Sbjct: 268 TKLLARLKNTIRLIDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAES 327
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
+FTE DVS T P D+ MFGFVTFA +TVK+ILAKGNPHF+CGARVLV
Sbjct: 328 SFTEHDVS----TTLPHSDI--------MFGFVTFACTETVKLILAKGNPHFICGARVLV 375
Query: 410 KPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSF-SRGCETSRFIRKQLLEEQEQA 468
KPYREKS+ + M + Q++D D E+++ RG E+SR +RK L E EQ+
Sbjct: 376 KPYREKSRSSRYLDNNKPLHGMRYGSQFIDRDLEINALPPRGSESSRLLRKPFLSEPEQS 435
Query: 469 FELERRRLAELQLVRKPMP-NPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTT 527
V K +P N Y G D K++ + AER+ YL+ LN T
Sbjct: 436 -------------VSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERLSYLLDYLN----T 478
Query: 528 GDRVKHVETNYTDQ---------ESEGLNLPDSPFANPIASGISTVT 565
D V ++ TNY D +S+ LNLPDSPF++ ISTVT
Sbjct: 479 EDNVMNITTNYRDNDRRTHCESLDSQVLNLPDSPFSSLSGKEISTVT 525
>gi|224068839|ref|XP_002302838.1| predicted protein [Populus trichocarpa]
gi|222844564|gb|EEE82111.1| predicted protein [Populus trichocarpa]
Length = 391
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/432 (59%), Positives = 304/432 (70%), Gaps = 52/432 (12%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MDFSEST++V+NRI+ ++PE V KIIGY+L+Q E+EMI LA SPD +I ++ KAK++
Sbjct: 1 MDFSESTKVVYNRIQAIEPEFVGKIIGYILIQNHGEREMIRLAFSPDNLIYAMICKAKSD 60
Query: 58 LQQLAMKSASSPISPSM--NSPVNEVSFQFNP---FSSRPPVSPAGCRVPSYWDHQVTNK 112
L L + ISPS SPV++V QF P SS P SP R
Sbjct: 61 LG-LNKIPVLNLISPSQVNPSPVSDVPQQFIPNSTVSSHPIFSPVKVR------------ 107
Query: 113 NNSDFVALGYSDSINE---LQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGAR 169
GYS+ + E +Q+Q QFL+L+D +E VN + FSS Y + ALS R
Sbjct: 108 ------TAGYSEMVPEDYRIQNQMQFLALDDPIEFVN---SDFSSSYIYPEPALS---PR 155
Query: 170 AGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLF 229
RR SL E PVK CHYF KGFCKHG+NC S + ++ N++ +
Sbjct: 156 TSRRSPSL-PEFPVKICHYFIKGFCKHGNNC-------SSNLNEIA--------NEEFVV 199
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
SPGS EKLELE+ ELLK+RRG P+SIASLPM+YYE YG+ LQA GYLTESQRHGKAGYSL
Sbjct: 200 SPGSFEKLELELTELLKSRRGVPVSIASLPMMYYEMYGRTLQAEGYLTESQRHGKAGYSL 259
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAES 349
TKLLARLKNS+RLIDRPHGQH+VILAED PKYLE ER+DPG IV GSRQIYLTFPAES
Sbjct: 260 TKLLARLKNSIRLIDRPHGQHSVILAEDFPKYLEYAGERNDPGGIVAGSRQIYLTFPAES 319
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
TFTE DVSNYF+ +GPV DVRIPCQQKRMFGFVTF A+TVK ILAKGNPH +CGARVLV
Sbjct: 320 TFTEQDVSNYFSNFGPVQDVRIPCQQKRMFGFVTFVFAETVKKILAKGNPHHICGARVLV 379
Query: 410 KPYREKSKLVDR 421
KPYREKS+L+DR
Sbjct: 380 KPYREKSRLIDR 391
>gi|115474605|ref|NP_001060899.1| Os08g0126700 [Oryza sativa Japonica Group]
gi|42407705|dbj|BAD08853.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113622868|dbj|BAF22813.1| Os08g0126700 [Oryza sativa Japonica Group]
gi|125602052|gb|EAZ41377.1| hypothetical protein OsJ_25894 [Oryza sativa Japonica Group]
gi|215767202|dbj|BAG99430.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 604
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 249/627 (39%), Positives = 338/627 (53%), Gaps = 87/627 (13%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
M+ E ++ F R+++++PE+V KI G +LL+E E++ LA P+ + + KA
Sbjct: 1 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSF------QFNPFSSRPPVSPAG------------- 98
L + + +++ V Q SRPPV G
Sbjct: 61 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 120
Query: 99 ------CRVPSYWDHQV----TNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLG 148
+ P YW T +F G + + ++ + Q HV L
Sbjct: 121 AAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGL---VVDASAEGPYPLRGGQ--HV-LD 174
Query: 149 NTGFSSDCYY--SDAALSNLG-------ARAGRRYQSLNAELPVKTCHYFNKGFCKHGSN 199
+ F YY + A N G ARA RR L+ P CHYF+KG CK+G N
Sbjct: 175 DNNFGGGYYYPAGEDAFPNGGGGGGGSPARA-RRSNGLSTRRP---CHYFSKGICKNGQN 230
Query: 200 CRYYHGLVSESFTQMFGQTSPDGFNDDHL---FSPGSLEKLELEIIELLKARRGNPISIA 256
C Y H V + + +G +H +PGSLE LE+EI ELL +RRG P+SIA
Sbjct: 231 CHYSHHQV---YQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIA 287
Query: 257 SLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE 316
SLP LY EKYGK LQA GYLTESQRHGKAGYSLT+LL+RL N +R+I+RPHGQH+V+LAE
Sbjct: 288 SLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVVLAE 346
Query: 317 DAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP 372
DA KY++ R D G + S QIYLTFPAESTF EDDV+NYF YGPV DVRIP
Sbjct: 347 DAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIP 406
Query: 373 CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM- 431
CQ++RMFGFV+F S +TV IL + NPHF+CG+RVLVKPYREKSK VDR + ++S +
Sbjct: 407 CQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKSMVP 466
Query: 432 YFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLVRKPMPNPPY 491
Y P++ + D EL++ + SR +RKQL E++E E+ERRR VR+ PP
Sbjct: 467 YCPPRFFEFDQELYTAEY--DASRLMRKQLAEKREMLLEMERRRAT----VRRLESMPPQ 520
Query: 492 FGGY---------MDGLKISEDRLNF--PSAERIDYLIGVLNNGSTTGDRVKHVETNYTD 540
F + + L+ +L+ PS D L +++N + ++ Y D
Sbjct: 521 FAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPL-EIVSNSQAPPTQAGNI---YDD 576
Query: 541 QESEGLN-LPDSPFA--NPIASGISTV 564
ES + LP+SPFA P + IST+
Sbjct: 577 HESNQIELLPESPFAASAPAGNSISTI 603
>gi|205688239|sp|Q6ZK57.2|C3H54_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 54;
Short=OsC3H54
Length = 653
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 248/626 (39%), Positives = 336/626 (53%), Gaps = 85/626 (13%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
M+ E ++ F R+++++PE+V KI G +LL+E E++ LA P+ + + KA
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSF------QFNPFSSRPPVSPAG------------- 98
L + + +++ V Q SRPPV G
Sbjct: 110 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 169
Query: 99 ------CRVPSYWDHQV----TNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLG 148
+ P YW T +F G + + ++ + Q HV L
Sbjct: 170 AAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGL---VVDASAEGPYPLRGGQ--HV-LD 223
Query: 149 NTGFSSDCYY--SDAALSNLG-------ARAGRRYQSLNAELPVKTCHYFNKGFCKHGSN 199
+ F YY + A N G ARA RR L+ P CHYF+KG CK+G N
Sbjct: 224 DNNFGGGYYYPAGEDAFPNGGGGGGGSPARA-RRSNGLSTRRP---CHYFSKGICKNGQN 279
Query: 200 CRYYHGLVSESFTQMFGQTSPDGFNDDHL---FSPGSLEKLELEIIELLKARRGNPISIA 256
C Y H V + + +G +H +PGSLE LE+EI ELL +RRG P+SIA
Sbjct: 280 CHYSHHQV---YQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIA 336
Query: 257 SLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE 316
SLP LY EKYGK LQA GYLTESQRHGKAGYSLT+LL+RL N +R+I+RPHGQH+V+LAE
Sbjct: 337 SLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVVLAE 395
Query: 317 DAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP 372
DA KY++ R D G + S QIYLTFPAESTF EDDV+NYF YGPV DVRIP
Sbjct: 396 DAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIP 455
Query: 373 CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM- 431
CQ++RMFGFV+F S +TV IL + NPHF+CG+RVLVKPYREKSK VDR + ++S +
Sbjct: 456 CQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKSMVP 515
Query: 432 YFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLVRKPMPNPPY 491
Y P++ + D EL++ + SR +RKQL E++E E+ERRR VR+ PP
Sbjct: 516 YCPPRFFEFDQELYTAEY--DASRLMRKQLAEKREMLLEMERRRAT----VRRLESMPPQ 569
Query: 492 FGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETN----------YTDQ 541
F + + ED S + + ++N + D ++ V + Y D
Sbjct: 570 FAYFDCSI---EDASPLHSLQDDSKQLDLMNPSLASPDPLEIVSNSQAPPTQAGNIYDDH 626
Query: 542 ESEGLN-LPDSPFA--NPIASGISTV 564
ES + LP+SPFA P + IST+
Sbjct: 627 ESNQIELLPESPFAASAPAGNSISTI 652
>gi|125560003|gb|EAZ05451.1| hypothetical protein OsI_27665 [Oryza sativa Indica Group]
Length = 607
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 249/630 (39%), Positives = 338/630 (53%), Gaps = 90/630 (14%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
M+ E ++ F R+++++PE+V KI G +LL+E E++ LA P+ + + KA
Sbjct: 1 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSF------QFNPFSSRPPVSPAG------------- 98
L + + +++ V Q SRPPV G
Sbjct: 61 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 120
Query: 99 ------CRVPSYWDHQV----TNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLG 148
+ P YW T +F G + + ++ + Q HV L
Sbjct: 121 AAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGL---VVDASAEGPYPLRGGQ--HV-LD 174
Query: 149 NTGFSSDCYY--SDAALSNLG----------ARAGRRYQSLNAELPVKTCHYFNKGFCKH 196
+ F YY + A N G ARA RR L+ P CHYF+KG CK+
Sbjct: 175 DNNFGGGYYYPAGEDAFPNGGGGGGGGGGSPARA-RRSNGLSTRRP---CHYFSKGICKN 230
Query: 197 GSNCRYYHGLVSESFTQMFGQTSPDGFNDDHL---FSPGSLEKLELEIIELLKARRGNPI 253
G NC Y H V + + +G +H +PGSLE LE+EI ELL +RRG P+
Sbjct: 231 GQNCHYSHHQV---YQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPV 287
Query: 254 SIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVI 313
SIASLP LY EKYGK LQA GYLTESQRHGKAGYSLT+LL+RL N +R+I+RPHGQH+V+
Sbjct: 288 SIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVV 346
Query: 314 LAEDAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
LAEDA KY++ R D G + S QIYLTFPAESTF EDDV+NYF YGPV DV
Sbjct: 347 LAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDV 406
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
RIPCQ++RMFGFV+F S +TV IL + NPHF+CG+RVLVKPYREKSK VDR + ++S
Sbjct: 407 RIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKS 466
Query: 430 PM-YFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLVRKPMPN 488
+ Y P++ + D EL++ + SR +RKQL E++E E+ERRR VR+
Sbjct: 467 MVPYCPPRFFEFDQELYTAEY--DASRLMRKQLAEKREMLLEMERRRAT----VRRLESM 520
Query: 489 PPYFGGY---------MDGLKISEDRLNF--PSAERIDYLIGVLNNGSTTGDRVKHVETN 537
PP F + + L+ +L+ PS D L +++N + ++
Sbjct: 521 PPQFAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPL-EIVSNSQAPPTQAGNI--- 576
Query: 538 YTDQESEGLN-LPDSPFA--NPIASGISTV 564
Y D ES + LP+SPFA P + IST+
Sbjct: 577 YDDHESNQIELLPESPFAASAPAGNSISTI 606
>gi|15231722|ref|NP_190866.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|7529722|emb|CAB86902.1| putative protein [Arabidopsis thaliana]
gi|332645500|gb|AEE79021.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 381
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 206/406 (50%), Positives = 260/406 (64%), Gaps = 52/406 (12%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE----QEMIHLAMSPDVVIQEVVYKAKA 56
M+F+E+ +V NRI +L+PEN +KIIGYLLL + ++MI LA PD V++ ++ K
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 57 ELQQLAMKS---ASSPISPSMNSPVNEVSFQFNPFSSRPP-VSPAGCRVPSYWDHQVTNK 112
EL + + + +S I ++ S Q S+ PP V G S+W+ N
Sbjct: 61 ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMG---TSFWE----NT 113
Query: 113 NNSDFVALGYSDSINELQSQTQ-FLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAG 171
N+ D + L+ Q FL ED + + FS +L R
Sbjct: 114 NDMD----------SSLKDNVQYFLDFEDSVTSPEFSTSFFSQK-------KQSLSLRTS 156
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSP 231
RR SL E P+K CHYFNKGFCKHG+NC H +S+ ++H+ SP
Sbjct: 157 RRSLSL-PEFPLKICHYFNKGFCKHGNNC---HNNLSD---------------EEHVVSP 197
Query: 232 GSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTK 291
GSLEKLE EIIELLK+RRG PISIA LPM+Y+EKYG+ LQA GYLTESQRHGKAG+SLTK
Sbjct: 198 GSLEKLEREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTK 257
Query: 292 LLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTF 351
LLARLKN++RLIDRPHGQH+VILAED K++E ERS+ G I+ GSRQ+YLTFPAES+F
Sbjct: 258 LLARLKNTIRLIDRPHGQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVYLTFPAESSF 317
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
TE DVSNYF+ GPV+DVRIPCQQKRM+GFVTF +TVK ILAK
Sbjct: 318 TEHDVSNYFSEVGPVEDVRIPCQQKRMYGFVTFVYMETVKRILAKA 363
>gi|297816588|ref|XP_002876177.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322015|gb|EFH52436.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 352
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 211/414 (50%), Positives = 251/414 (60%), Gaps = 80/414 (19%)
Query: 10 VFNRIKKLDPENVTKIIGYLLLQE----QEMIHLAMSPDVVIQEVVYKAKAELQQLAMKS 65
V NRI++L+PEN KIIGYLLL + ++MI LA PD V++ ++ K EL +
Sbjct: 4 VQNRIQQLEPENALKIIGYLLLMQHHNDRDMIRLAFCPDSVMRSMINCVKYELAN----N 59
Query: 66 ASSPISPSMNSPVNEVSFQFNPFS-----------SRPPVSPAGCRVPSYWDHQVTNKNN 114
+ I S + V +F F+ S P V G S+W++ TN +
Sbjct: 60 SHCDIPTSDHIQVR----KFGSFTGSSNQSLLVSISPPSVLSMG---TSFWEN--TNDMD 110
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
S Y + T F S E Q L R RR
Sbjct: 111 SSLQNNVYPEF------STSFFSQEKQ-----------------------GLSLRTSRRS 141
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
SL E PVK CHYFNKGFCKHG+NC +++H+ S SL
Sbjct: 142 LSL-PEFPVKICHYFNKGFCKHGNNCS----------------------DEEHVVSAVSL 178
Query: 235 EKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLA 294
EKLE EII LLK+RRG PISIASLPM+YYEKYG+ LQA GYLTESQRHGKAGYSLTKLL
Sbjct: 179 EKLEREIIYLLKSRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLV 238
Query: 295 RLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTED 354
RLKN++RLIDRPHGQH+VILAED K++E E+S+ G I+ GSRQIYLTFPAES+FTE
Sbjct: 239 RLKNTIRLIDRPHGQHSVILAEDVLKFVEYTGEKSEHGAILAGSRQIYLTFPAESSFTEH 298
Query: 355 DVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
DVSNYF+ GPV+DVRIPCQQKRMFGF TFA + VK ILAKGNPHFVCGARVL
Sbjct: 299 DVSNYFSKVGPVEDVRIPCQQKRMFGFETFAYTEDVKHILAKGNPHFVCGARVL 352
>gi|357115916|ref|XP_003559731.1| PREDICTED: zinc finger CCCH domain-containing protein 54-like
[Brachypodium distachyon]
Length = 552
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 240/592 (40%), Positives = 324/592 (54%), Gaps = 69/592 (11%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQE---MIHLAMSPDVVIQEVVYKAKAE 57
M+ +E T++VF+R++K+DP+NV KI+G +LL+E + M+ LA PD + V AKA
Sbjct: 1 MESAELTKLVFSRVQKVDPDNVCKIVGCILLREPDEDSMVQLAYGPDATLVATVVDAKAT 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSR-PPVSPAGCRVPSYWDHQVTNKNNSD 116
L + + +SS + +P + SP YW
Sbjct: 61 LAAIYARCSSSSAAHHQQQHHYRQHHLCSPHPGQLRHFSPGAAFSFQYW----------- 109
Query: 117 FVALGYSDSINELQSQTQFLSLED-----QMEHVNLGNTGFSSDCYYSDAALSNLGARAG 171
+DS + ++ + D + + G Y S AA S GA G
Sbjct: 110 ----AAADSGSPAAAEKDHYAFVDAAAAAESPYGGDHLDGGGGGGYCSYAATSP-GA-GG 163
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSP 231
R +S N P CHYF KG CK+G NC Y H V + M Q G +P
Sbjct: 164 PRRRSNNGRRP---CHYFFKGICKNGQNCHYSHHQV---YADMDHQHHLQGNGGG--TTP 215
Query: 232 GSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTK 291
GSLE+LE+EI ELL +RRG P+SIASLP LY E YGK LQA GYLTESQRHGKAGYSLTK
Sbjct: 216 GSLERLEVEITELLHSRRGQPVSIASLPTLYGEMYGKGLQADGYLTESQRHGKAGYSLTK 275
Query: 292 LLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTF 351
LL+RL N +R+I+RPHGQH+V+LAEDA KY + R++R G + S QIYLTFP++S+F
Sbjct: 276 LLSRL-NKIRVIERPHGQHSVVLAEDAAKYTDCRSDRG--GDMPASSNQIYLTFPSDSSF 332
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411
TEDDV+NYF YGPV DVRIPCQ +RMFGFV+F + +TV +L + NPHF+CG+RVL KP
Sbjct: 333 TEDDVANYFGQYGPVRDVRIPCQDQRMFGFVSFQNPETVTTLLTRRNPHFICGSRVLAKP 392
Query: 412 YREKSKLVDRK------YQERMESPMYFSPQYVDMDSELHSF-----SRGCETSRFIRKQ 460
YREK+K ++ + Y+ R P PQ + H F ++ R RKQ
Sbjct: 393 YREKTKCINERSSIEVVYKVR---PSLSLPQKEEKKLHPHQFWLTDLPAEYDSPRLARKQ 449
Query: 461 LLEEQE-QAFELERRRLAELQLVRKPMPNPPYFG------GYMDGLKISEDRLNFPSAER 513
L+E+++ + ELERR LA L++ P+ YF G + + L
Sbjct: 450 LVEKRDNRLLELERRHLAGLRV----EPHVAYFDCSIRDIGPFNSQSAAAKELGL----- 500
Query: 514 IDYLI--GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGIST 563
+D L+ +N ST+ NY DQES + LP+SPFA+ +G S
Sbjct: 501 MDPLVTPAPMNIVSTSQAPPIKASNNYDDQESNQIELPESPFASSAPAGNSV 552
>gi|168037568|ref|XP_001771275.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677364|gb|EDQ63835.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 386
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 206/429 (48%), Positives = 261/429 (60%), Gaps = 51/429 (11%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV+ R++ L+PE +KI+ +LLLQE +EM+ LA+ +V+IQ VV KAK E
Sbjct: 1 MDSYEATRIVYGRVQALEPETGSKIMLHLLLQEHGEREMVRLALGSNVLIQSVVKKAKKE 60
Query: 58 LQQLAMKSASSPISPSMNSP--VNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNN- 114
L ++ + N+P + + F F S SP+ S +N+
Sbjct: 61 L---GLEDNRDVMPLQHNAPLYIPDHDFASGSFGSNVLSSPSLHDQMSSLSDAFDRQNSL 117
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
F Y ++ L S +FL +L SS
Sbjct: 118 HAFYDHYYPETYAFLNSSKEFLHSRSSSSRASLAVDSSSS-------------------- 157
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
L L K C YF +G+CKHGS+CR+ HG+ DD + +PGSL
Sbjct: 158 PDLGPALAWKPCLYFARGYCKHGSSCRFLHGM------------------DDGM-APGSL 198
Query: 235 EKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLA 294
E+LE+E+ ELL+ RR P+SIASLP LYYE++GK LQA GYLTESQRHGKAGYSLTKLLA
Sbjct: 199 ERLEIELQELLRGRRA-PVSIASLPQLYYERFGKTLQAEGYLTESQRHGKAGYSLTKLLA 257
Query: 295 RLKNSVRLIDRPHGQHAVILAEDAPKYLENRNER--SDPGPIVTGSRQIYLTFPAESTFT 352
RLKN+V LIDRPHGQHAV+LAEDA ++ R++ D I SRQIYLTFPAESTFT
Sbjct: 258 RLKNTVTLIDRPHGQHAVVLAEDAHRFTAYRSDHRGEDLSGINPSSRQIYLTFPAESTFT 317
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412
E+DV+ +F YGPV DVRIP QQKRMFGFVTF ++TVK IL++GNPH++CGARVLVKPY
Sbjct: 318 EEDVTAHFRAYGPVQDVRIPYQQKRMFGFVTFVYSETVKAILSEGNPHYICGARVLVKPY 377
Query: 413 REKSKLVDR 421
REK K DR
Sbjct: 378 REKGKHGDR 386
>gi|168011119|ref|XP_001758251.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690707|gb|EDQ77073.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 421
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 208/461 (45%), Positives = 270/461 (58%), Gaps = 80/461 (17%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV+ R++ L+PE +KI+ +LLLQE +EM+ LA+ +V++Q VV KAK E
Sbjct: 1 MDSYEATRIVYGRVQALEPETGSKIMLHLLLQEHGEREMLRLALGSNVLMQSVVKKAKKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKN--NS 115
L +S P+ PA +P DH+ + ++
Sbjct: 61 LGLDDSRSVMPPLQKR----------------------PAPLYIP---DHEFASGGFGSN 95
Query: 116 DFVALGYSDSINELQSQTQF---LSLEDQM---EHVNLGNTGFS--------SDCYYSDA 161
+ G D + Q Q L L+DQ+ +H++L + +D YY D
Sbjct: 96 VLTSPGLLDQVKLATIQQQHHNQLFLQDQLPLHDHLSLLSDAVDQQNSLRVYTDHYYPDT 155
Query: 162 -ALSNLGARAGRRYQSLNAELPV---------------KTCHYFNKGFCKHGSNCRYYHG 205
A N S + P+ K C YF +G+CKHGS+CR
Sbjct: 156 YAFLNSSKEILHSRSSSSRASPIVDSSSPPDLGPTLAWKPCLYFARGYCKHGSSCR---- 211
Query: 206 LVSESFTQMFGQTSPDGFND---DHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLY 262
S +G + D +PGSLE+LE+E+ ELL+ RR P+SIASLP LY
Sbjct: 212 ----------SPASSNGHRELRVDDGMAPGSLERLEIELQELLRGRRA-PVSIASLPQLY 260
Query: 263 YEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYL 322
YE++GK LQA GYLTESQRHGKAGYSLTKLLARLKN+V LIDRPHGQHAV+LAEDA ++
Sbjct: 261 YERFGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNTVTLIDRPHGQHAVVLAEDAHRFT 320
Query: 323 ENRNER--SDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
+R++ D I SRQIYLTFPAESTF E+DV+++F YGPV DVRIP QQKRMFG
Sbjct: 321 VHRSDHRGEDLSGINPSSRQIYLTFPAESTFCEEDVTSHFRAYGPVQDVRIPYQQKRMFG 380
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
FVTF ++TVK IL++GNPH++CGARVLVKPYREK K DR
Sbjct: 381 FVTFVYSETVKAILSEGNPHYICGARVLVKPYREKGKHGDR 421
>gi|302796663|ref|XP_002980093.1| hypothetical protein SELMODRAFT_112009 [Selaginella moellendorffii]
gi|300152320|gb|EFJ18963.1| hypothetical protein SELMODRAFT_112009 [Selaginella moellendorffii]
Length = 394
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 208/452 (46%), Positives = 256/452 (56%), Gaps = 89/452 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF R++ DPENV+KIIG +LLQ EQEM LA+ D ++Q + KA+ E
Sbjct: 1 MDAYEATQLVFARVQAQDPENVSKIIGLMLLQDRSEQEMARLALGSDALLQSAIAKARRE 60
Query: 58 LQQLAMK-------SASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPS------Y 104
L A +N S F P SP+ PS
Sbjct: 61 LGLFAANPHPGLSDQHHHHRQHHHQQRINRPSLLFIPEGGTVSSSPSNLFQPSPSPDEFA 120
Query: 105 WDHQVTNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTG-FSSDCYYSDAAL 163
D + N N+ QF +D + L NT FS+
Sbjct: 121 TDQWLLNHNH-------------------QFQLHQDPL----LKNTSRFSTS-------- 149
Query: 164 SNLGARAGRRY--------------QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSE 209
S+ A A RR+ L L K C Y++KG CK G++CR
Sbjct: 150 SSPAADAQRRHLQQLQFPASHYPSSHDLAMALTCKPCLYYSKGHCKRGTSCR-------- 201
Query: 210 SFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKV 269
SP S GSLE+LE+E+ ELL+ RR P+SIASLP LY+EK+G+
Sbjct: 202 ---------SP---------SSGSLERLEMELQELLRGRR-TPVSIASLPQLYFEKFGRA 242
Query: 270 LQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERS 329
LQA GYLTESQRHGKAG SLTKLLARLK SV LIDRPHGQHAV+LAEDA +++ R +R
Sbjct: 243 LQAQGYLTESQRHGKAGCSLTKLLARLKGSVALIDRPHGQHAVVLAEDAQRFVGYRADRD 302
Query: 330 DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADT 389
D + SRQIYLTFPAESTFTEDDVS +F +YGPV DVRIP QQKRMFGFVTF +T
Sbjct: 303 DLKDVNPSSRQIYLTFPAESTFTEDDVSAHFRSYGPVQDVRIPYQQKRMFGFVTFIYPET 362
Query: 390 VKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
VK IL++GNPH++CGARVLVKPYREK+KL +R
Sbjct: 363 VKAILSEGNPHYICGARVLVKPYREKAKLGER 394
>gi|302785371|ref|XP_002974457.1| hypothetical protein SELMODRAFT_101113 [Selaginella moellendorffii]
gi|300158055|gb|EFJ24679.1| hypothetical protein SELMODRAFT_101113 [Selaginella moellendorffii]
Length = 355
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 189/420 (45%), Positives = 243/420 (57%), Gaps = 73/420 (17%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+ R V+ R++ LD NV KI+GYLLLQ E+EM+ LA S D V++ V +AK E
Sbjct: 1 MDVEEARRAVYTRVQCLDSANVLKIMGYLLLQDISEKEMLELARSSDSVVEAFVARAKQE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L ++ S+ Q S P + G +V + + S
Sbjct: 61 LGLISSGGGSA-------------GDQALAIDSIPCLGAEGSQV-------LGLGSQSPV 100
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSL 177
VA SD I E S + L+ D + VN T SS +
Sbjct: 101 VAQDLSD-IWERPSYLEKLTRADHVAAVN--ATSPSSPSW-------------------- 137
Query: 178 NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKL 237
K C YF +G+CKHGS CR S + + G + D SL L
Sbjct: 138 ------KPCLYFARGYCKHGSACR--------SSSDLTGSSMVD-----------SLAGL 172
Query: 238 ELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLK 297
E E+ ELL RR P+SIASLP LY+EK+GK LQA GYLTESQRHGKAG+SLTKLL +L+
Sbjct: 173 EAEMRELLTGRR-TPVSIASLPQLYHEKFGKSLQADGYLTESQRHGKAGHSLTKLLIKLR 231
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVS 357
+V LIDRPHGQHAV+LAEDA K++ + S + SRQIYLTFPAES F+E+DV+
Sbjct: 232 ATVTLIDRPHGQHAVVLAEDAHKFMAYGQDSSAIAANPS-SRQIYLTFPAESGFSEEDVT 290
Query: 358 NYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
+F+++GPV DVRIP QQKRMFGFVTF ++TV+ ILA+GNPH++CGARVLVKPY+EK +
Sbjct: 291 THFSSFGPVQDVRIPYQQKRMFGFVTFTYSETVRTILAEGNPHYICGARVLVKPYKEKGR 350
>gi|302808135|ref|XP_002985762.1| hypothetical protein SELMODRAFT_122578 [Selaginella moellendorffii]
gi|300146671|gb|EFJ13340.1| hypothetical protein SELMODRAFT_122578 [Selaginella moellendorffii]
Length = 353
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 183/424 (43%), Positives = 243/424 (57%), Gaps = 83/424 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+ R V+ R++ LD NV KI+GYLLLQ E+EM+ LA S D V++ V +AK
Sbjct: 1 MDVEEARRAVYTRVQCLDSANVLKIMGYLLLQDISEKEMLELARSSDSVVEAFVARAK-- 58
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
Q+L + S+ + ++ + P + G +V
Sbjct: 59 -QELGLISSGGGSADDQALAIDSI----------PCLGAEGSQV---------------- 91
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSL 177
+ LG + +L SD + + L L RA ++
Sbjct: 92 LGLGSQSPVQDL------------------------SDIWERPSYLEKL-TRADH-VAAV 125
Query: 178 NAELP----VKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGS 233
NA P K C YF +G+CKHGS CR S + + G + D S
Sbjct: 126 NATSPSSPSWKPCLYFARGYCKHGSACR--------SSSDLTGSSMVD-----------S 166
Query: 234 LEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLL 293
L LE E+ ELL RR P+SIASLP LY+EK+GK LQA GYLTESQRHGKAG+SLTKLL
Sbjct: 167 LAGLEAELRELLTGRR-TPVSIASLPQLYHEKFGKSLQADGYLTESQRHGKAGHSLTKLL 225
Query: 294 ARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTE 353
+L+ +V L+DRPHGQHAV+LAEDA K++ + S + SRQIYLTFPAES F+E
Sbjct: 226 IKLRATVTLLDRPHGQHAVVLAEDAHKFMAYGQDSSAIAANPS-SRQIYLTFPAESGFSE 284
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DV+ +F+++GPV DVRIP QQKRMFGFVTF ++TV+ ILA+GNPH++CGARVLVKPY+
Sbjct: 285 EDVTTHFSSFGPVQDVRIPYQQKRMFGFVTFTYSETVRTILAEGNPHYICGARVLVKPYK 344
Query: 414 EKSK 417
EK +
Sbjct: 345 EKGR 348
>gi|302822034|ref|XP_002992677.1| hypothetical protein SELMODRAFT_236569 [Selaginella moellendorffii]
gi|300139523|gb|EFJ06262.1| hypothetical protein SELMODRAFT_236569 [Selaginella moellendorffii]
Length = 361
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 149/236 (63%), Positives = 176/236 (74%), Gaps = 27/236 (11%)
Query: 186 CHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELL 245
C Y++KG CK G++CR SP S GSLE+LE+E+ ELL
Sbjct: 153 CLYYSKGHCKRGTSCR-----------------SP---------SSGSLERLEMELQELL 186
Query: 246 KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDR 305
+ RR P+SIASLP LY+EK+G+ LQA GYLTESQRHGKAG SLTKLLARLK SV LIDR
Sbjct: 187 RGRR-TPVSIASLPQLYFEKFGRALQAQGYLTESQRHGKAGCSLTKLLARLKGSVALIDR 245
Query: 306 PHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGP 365
PHGQHAV+LAEDA +++ R +R D + SRQIYLTFPAESTFTEDDVS +F +YGP
Sbjct: 246 PHGQHAVVLAEDAQRFVGYRADRDDLKDVNPSSRQIYLTFPAESTFTEDDVSAHFRSYGP 305
Query: 366 VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
V DVRIP QQKRMFGFVTF +TVK IL++GNPH++CGARVLVKPYREK+KL +R
Sbjct: 306 VQDVRIPYQQKRMFGFVTFIYPETVKAILSEGNPHYICGARVLVKPYREKAKLGER 361
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF R++ DPENV+KIIG +LLQ EQEM LA+ D ++Q + KA+ E
Sbjct: 1 MDAYEATQLVFARVQAQDPENVSKIIGLMLLQDRSEQEMARLALGSDALLQSAIAKARRE 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|413957279|gb|AFW89928.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 381
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 186/464 (40%), Positives = 250/464 (53%), Gaps = 92/464 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE + R+K+++PEN +KI+G +LL+E Q+M+ LA D + + AKA
Sbjct: 1 MDSSELHILALQRVKQVEPENASKILGCILLEEPDNQDMLQLAYGNDAEVHAKISHAKAM 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + +SSP +F ++ YW V NK ++
Sbjct: 61 LDAIVACCSSSP------------AFGYH-----------------YWP-PVPNKAQAEE 90
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYS--DAALSNLGARAGRRYQ 175
AL Q +H + G CYY+ +A + N G R
Sbjct: 91 YAL--------------------QPQHYSGGG------CYYASENALIYNGGGPPRSRLS 124
Query: 176 SLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLE 235
S + CHYF KG CK+G +C Y H + G+LE
Sbjct: 125 STR-----RPCHYFIKGICKNGQSCHYSH------------------HRQEAQVCSGALE 161
Query: 236 KLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLAR 295
KLELEIIELLK+R G P+SIASLP LY ++YGK L+A GYLTES+RHGKAGYSL++L++R
Sbjct: 162 KLELEIIELLKSRHGQPLSIASLPTLYGDRYGKSLKADGYLTESKRHGKAGYSLSRLISR 221
Query: 296 LKNSVRLIDRPHGQHAVILAEDAPKYLE--NRNERSDPGPIVTGSRQIYLTFPAESTFTE 353
L + + I+RPHGQH V+LAEDA +Y E +R ER G + + S Q+YLTFP+ESTF E
Sbjct: 222 L-SKITTIERPHGQHYVVLAEDAGRYKELMSRGERG--GDMGSSSHQVYLTFPSESTFME 278
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DV+NYF YG V DVRIP Q+KRMFGFV+F + +TV IL PHF+ +RVLVK Y
Sbjct: 279 EDVANYFGLYGSVRDVRIPWQEKRMFGFVSFHNPETVNTILTMRIPHFIGESRVLVKRYI 338
Query: 414 EKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFI 457
EKSK ++R R + F +DMD F+ C S+ I
Sbjct: 339 EKSKCIERY---RPRALRRFVGMDMDMDMNGKYFNLICWCSQQI 379
>gi|226500396|ref|NP_001140295.1| uncharacterized protein LOC100272340 [Zea mays]
gi|194698886|gb|ACF83527.1| unknown [Zea mays]
gi|413957280|gb|AFW89929.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 472
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 237/428 (55%), Gaps = 89/428 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE + R+K+++PEN +KI+G +LL+E Q+M+ LA D + + AKA
Sbjct: 1 MDSSELHILALQRVKQVEPENASKILGCILLEEPDNQDMLQLAYGNDAEVHAKISHAKAM 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + +SSP +F ++ YW V NK ++
Sbjct: 61 LDAIVACCSSSP------------AFGYH-----------------YWP-PVPNKAQAEE 90
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYS--DAALSNLGARAGRRYQ 175
AL Q +H + G CYY+ +A + N G R
Sbjct: 91 YAL--------------------QPQHYSGGG------CYYASENALIYNGGGPPRSRLS 124
Query: 176 SLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLE 235
S + CHYF KG CK+G +C Y H + G+LE
Sbjct: 125 STR-----RPCHYFIKGICKNGQSCHYSH------------------HRQEAQVCSGALE 161
Query: 236 KLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLAR 295
KLELEIIELLK+R G P+SIASLP LY ++YGK L+A GYLTES+RHGKAGYSL++L++R
Sbjct: 162 KLELEIIELLKSRHGQPLSIASLPTLYGDRYGKSLKADGYLTESKRHGKAGYSLSRLISR 221
Query: 296 LKNSVRLIDRPHGQHAVILAEDAPKYLE--NRNERSDPGPIVTGSRQIYLTFPAESTFTE 353
L + + I+RPHGQH V+LAEDA +Y E +R ER G + + S Q+YLTFP+ESTF E
Sbjct: 222 L-SKITTIERPHGQHYVVLAEDAGRYKELMSRGERG--GDMGSSSHQVYLTFPSESTFME 278
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DV+NYF YG V DVRIP Q+KRMFGFV+F + +TV IL PHF+ +RVLVK Y
Sbjct: 279 EDVANYFGLYGSVRDVRIPWQEKRMFGFVSFHNPETVNTILTMRIPHFIGESRVLVKRYI 338
Query: 414 EKSKLVDR 421
EKSK ++R
Sbjct: 339 EKSKCIER 346
>gi|356542895|ref|XP_003539900.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 698
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 226/662 (34%), Positives = 318/662 (48%), Gaps = 150/662 (22%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIVF+RI+ LD EN +KI+G LLLQ E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDSYEATRIVFSRIQNLDAENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVS----PAGCRVP---SYW----- 105
L + S S P + SP +S Q + SSR VS P +P + W
Sbjct: 61 L---GLPSNSPPTPSTPPSPSPFISRQNSNTSSRLSVSGINLPPPLTIPNPSASWPTMSE 117
Query: 106 ------DHQVTNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLG-NTGFSS---- 154
T+ ++ F A G SD I+E Q L+DQ+ +N G NT S
Sbjct: 118 LQTDLVAGSSTSLSSLPFYANGGSDPIDEFQ-------LQDQLSFLNDGSNTSISHKNNP 170
Query: 155 DCYY---SDAALS-------------NLGARAGRRYQSLN----------AELPVKTCHY 188
D +Y SD + S G RR S+N + L K C Y
Sbjct: 171 DLFYPTYSDFSSSPTTAADPTLFPSYGWGGSLHRRSCSVNDACLGTEDPNSGLGWKPCLY 230
Query: 189 FNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKAR 248
F +G+CK+G++CR+ HG + ++ M G SP +E +E + ELL+++
Sbjct: 231 FARGYCKNGTSCRFLHGGLGDADAAMVG-------------SPSKIEMME-QCHELLRSK 276
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
+A A L S + + LL + +N +
Sbjct: 277 SAQQQRLA---------------AASQLMSSSTFPYSPKCMNFLLQQQQNDTQRA----A 317
Query: 309 QHAVILAEDAPKYLENRNERSD-----PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTY 363
A++++ED K+ +R ER+D PG + SRQIYLTFPA+STF E+DVSNYF+ Y
Sbjct: 318 AAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIY 377
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKY 423
GPV DVRIP QQKRMFGFVTF +TVK+IL+KGNPHFVC ARVLVKPY+EK K+ D+K
Sbjct: 378 GPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKL 437
Query: 424 QERMESPMYFSP--QYVDMDSELHSFSRGCETSRF------IRKQLLEEQ---EQAFELE 472
Q++ FSP +D+ H F + F + ++ LEEQ +QA EL+
Sbjct: 438 QQQQVDRGDFSPCGTPTGLDARDHQFDLQLGSRMFYNTQDMLWRRKLEEQADLQQALELQ 497
Query: 473 RRRLAELQLVR------------KPMPNP------------PYFGGYMDGLKISEDRLNF 508
RRL LQL+ P+P+P P F + K S +
Sbjct: 498 SRRLMGLQLLDIKKHHQRALCTGSPIPSPTHSPNMFNQNLVPSFHITSEAPKES-GSTSA 556
Query: 509 PSA--------ERIDYLIG--VLNNGSTTGDRVKHVETNYTD----QESEGLNLPDSPFA 554
P+ + ++ +G V+ NG D +++ D QE NLPDSPFA
Sbjct: 557 PAGTASVSTGQQSVNISVGKEVMVNGEDGYDEGNGRQSSSHDDCDLQECLEHNLPDSPFA 616
Query: 555 NP 556
+P
Sbjct: 617 SP 618
>gi|356542909|ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 704
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 195/548 (35%), Positives = 273/548 (49%), Gaps = 99/548 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIVF+RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDGYEATRIVFSRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPA-GCRVPSYW----------- 105
L + + PS + ++ + + S + PA PS W
Sbjct: 61 LGLPSNSPPTPSTPPSPSPFISRQNLNTSSRLSGTNIPPALTIPNPSSWPTMSELQTPDD 120
Query: 106 ----DHQVTNKNNSD----FVALGYSDSINELQSQTQFLSLED------QMEHVNLGNTG 151
+H V + S F A G SD I+E Q Q Q L D + H N +
Sbjct: 121 LMSPNHLVVGSSTSSLSLPFYANGGSDPIDEFQLQDQLAFLNDGSPTSTALSHKNNPDMF 180
Query: 152 FSSDCYYSDAALS----------NLGARAGRRYQSLN----------AELPVKTCHYFNK 191
+ S+ S + + G RR S+N + L K C YF +
Sbjct: 181 YPSNSDLSSSPTTAADPTLFPSYGWGGSLHRRSCSVNDACLGTEDPNSGLGWKPCLYFAR 240
Query: 192 GFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGN 251
G+CK+G++CR+ HG + ++ M G SP +E +E + ELL+++ G
Sbjct: 241 GYCKNGTSCRFLHGGLGDADAAMVG-------------SPSKIEMME-QCHELLRSKSGQ 286
Query: 252 PISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHA 311
+A A L S + + LL + +N + A
Sbjct: 287 QQRLA---------------AASQLMASSTFPYSPKCMNFLLQQQQNDTQRA----AAAA 327
Query: 312 VILAEDAPKYLENRNERSD-----PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
++++ED K+ +R ER+D PG + SRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 328 LMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPV 387
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQ 424
DVRIP QQKRMFGFVTF +TVK+IL+KGNPHFVC ARVLVKPY+EK K+ D RK Q
Sbjct: 388 QDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKLQ 447
Query: 425 ERMESPMYFSP--QYVDMDS----ELHSFSRGC-ETSRFIRKQLLEEQ---EQAFELERR 474
++ FSP +D+ +L R T + ++ LEEQ +QA EL+ R
Sbjct: 448 QQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSR 507
Query: 475 RLAELQLV 482
RL LQL+
Sbjct: 508 RLMGLQLL 515
>gi|356529848|ref|XP_003533499.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 696
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 215/655 (32%), Positives = 319/655 (48%), Gaps = 128/655 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TR+VF+RI+ LDPEN +KI+G LLLQ E+E+I LA P+ ++ V+ KA+ E
Sbjct: 1 MDSYEATRVVFSRIQNLDPENASKIMGLLLLQDHGEKELIRLAFGPEALVHSVILKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQF------------NPFSSRPPVSPAGCRVPS-Y 104
L + S S + ++ SP +S Q NP +S P +S + P
Sbjct: 61 L---GLPSNSPHTTSTLPSPSPYLSKQNSTSSRLSALTIPNPSASWPTMSE--LQTPDDL 115
Query: 105 WDHQVTNKNNSDFVALGYSDSINELQSQTQFLSLED----QMEHVNLGNTGF-------- 152
+T+ ++ + A G SD ++E Q Q Q L D H N F
Sbjct: 116 VAGSLTSSSSLPYYANGGSDPVDEFQLQDQLAFLNDGSNTSTSHKNNNPDLFYPNNNSDL 175
Query: 153 -SSDCYYSDAAL---SNLGARAGRRYQSL----------NAELPVKTCHYFNKGFCKHGS 198
SS +D L G RR S+ N+ L K C YF +G+CK+G+
Sbjct: 176 SSSPTTAADPTLFPSDGWGGSLHRRSCSVSDACLGSEDPNSGLGWKPCLYFARGYCKNGT 235
Query: 199 NCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASL 258
+CR+ HG + ++ + SP +E +E + ELL+++
Sbjct: 236 SCRFLHGGLGDADVGGAAAA--------MVGSPSKIEMME-QCHELLRSKS--------- 277
Query: 259 PMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA 318
+++ + L A L S + S+ LL + +N + A++++ED
Sbjct: 278 ----FQQ--QRLAAASQLMASSIFPYSPKSMNFLLQQQQNDTQRA----AAAALMMSEDL 327
Query: 319 PKYLENRNERSD-----PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC 373
K+ +R ER+D P + SRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP
Sbjct: 328 HKFGRSRLERNDFSLNSPVMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY 387
Query: 374 QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERME----S 429
QQKRMFGFVTF +TVK+IL+KGNPHFVC ARVLVKPY+EK K+ D+K Q++++ S
Sbjct: 388 QQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRGDFS 447
Query: 430 PMYFSPQYVDMDSELHSFSRG---CETSRFIRKQLLEEQ---EQAFELERRRLAELQL-- 481
P +P +D + G T + ++ LEEQ +QA EL+ RRL LQL
Sbjct: 448 PCG-TPTGLDARDQFDLQLGGRMLYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLD 506
Query: 482 VRK----------PMPNPPYFGGYMDGLKISEDRLNFPSAER------------------ 513
++K P+P+P + + + +N S +
Sbjct: 507 IKKHHQRALSTGSPIPSPTHSPNMFNQNIVPSFHINSESPKESGSTSAPASTASVSAGQQ 566
Query: 514 -IDYLIG---VLN--NGSTTGDRVKHVETNYTD-QESEGLNLPDSPFANPIASGI 561
++ +G V+N NG G+ + + D QE NLPDSPFA+P + +
Sbjct: 567 PVNISVGKEVVVNGENGYKEGNGKQSSSHDDCDLQECLEHNLPDSPFASPTKAAV 621
>gi|297734950|emb|CBI17184.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 185/520 (35%), Positives = 255/520 (49%), Gaps = 124/520 (23%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLL----QEQEMIHLAMSPDVVIQEVVYKAKA 56
MD E+TRIVF+RI+ LDPEN +KI+GY+LL E+EMI LA P+ ++ ++ KAK
Sbjct: 1 MDSYEATRIVFSRIQALDPENASKIMGYILLIQDHGEKEMIRLAFGPETLLHNLILKAKT 60
Query: 57 ELQQLAMKSAS-------SPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQV 109
+L L+ ++ +PIS P N FNP SS P
Sbjct: 61 QLGILSNTPSTPTSPSPFNPISKPTRLPTNN---GFNPSSSWP----------------- 100
Query: 110 TNKNNSDFVALGYSD--SINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLG 167
G+SD S N +Q + +L + + F+ CY SD S G
Sbjct: 101 ---------VSGFSDLRSPNSTTAQLSYAALHRR-------SYSFNDACYGSDDGASGFG 144
Query: 168 ARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDH 227
K C YF +GFCK+G+ C++ HG ++S ++
Sbjct: 145 ---------------WKPCLYFARGFCKNGNTCKFLHGGFADSVEASSAASA------AI 183
Query: 228 LFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYE-KYGKVLQAGGYLTESQRHGKAG 286
+ SPG L+ E E++ + R +++AS M Y K + E+QR A
Sbjct: 184 VGSPGKLDGFEQEMLRSQQQR----LAVASQLMAGLNFPYNKCMNFFMQQNETQRSAAA- 238
Query: 287 YSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQ 340
A+++ E+ K+ R ER+D G + GSRQ
Sbjct: 239 ------------------------ALMMGEELHKFGRCRPERNDFSGMGLGGAVNPGSRQ 274
Query: 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPH 400
IYLTFPA+STF E+DVSNYF+ +GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPH
Sbjct: 275 IYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPH 334
Query: 401 FVCGARVLVKPYREKSKLVDRKYQ------------ERMESPMYFSPQYVDMDS--ELHS 446
FVC +RVLVKPY+EK K+ ++K Q ER E SP +D +LH
Sbjct: 335 FVCDSRVLVKPYKEKGKVPEKKQQHQQQQQQQQQQLERGEYSTCSSPSGIDPREPYDLHL 394
Query: 447 FSRGC-ETSRFIRKQLLEEQ---EQAFELERRRLAELQLV 482
+R T + ++ LEEQ +QA EL+ RRL LQL+
Sbjct: 395 GARMFYNTQEMLLRRKLEEQADLQQAIELQGRRLMNLQLL 434
>gi|302755024|ref|XP_002960936.1| hypothetical protein SELMODRAFT_437396 [Selaginella moellendorffii]
gi|300171875|gb|EFJ38475.1| hypothetical protein SELMODRAFT_437396 [Selaginella moellendorffii]
Length = 523
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 192/600 (32%), Positives = 295/600 (49%), Gaps = 135/600 (22%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E TR+++ R++ LDP V+KIIGYLLLQ EQ+M+ +A+ D ++ VV KAK E
Sbjct: 1 MDPYELTRMLYARVQALDPRYVSKIIGYLLLQDEAEQDMLRMALGSDALLFSVVDKAKQE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L +SPS N+ + + PF SRP P + +DHQ+ ++
Sbjct: 61 LG----------LSPSPNAHFDHPA----PF-SRPEHPP--FHFSTAFDHQL--QSTYHL 101
Query: 118 VALGYSDSIN-------ELQSQTQFL---SLEDQMEHVNLGNTG-FSSDCYYSDA----- 161
+ + +N +LQ Q + + S++D +H L G F +D +Y +
Sbjct: 102 RDVYHPPLVNSHVPFQKQLQQQAELMNRPSMQDIYQHQPLFGAGVFPNDHFYPETFAFLN 161
Query: 162 ---------------------ALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNC 200
+LS + S N+ K C Y+++G CKHGS C
Sbjct: 162 RNRLKQQKQQQQKSDEHDLMLSLSEHESPNSSSSSSNNSSHAWKPCVYYSRGHCKHGSGC 221
Query: 201 RYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPM 260
R+ H +P+ + + +LE+LELEI ELL+AR+ +P+ I+ LP
Sbjct: 222 RFLH--------------TPNSLGIEEHGTESALERLELEIQELLRARK-SPVPISLLPQ 266
Query: 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
+Y+E++G L G+L + G LT LL +KN++ +ID+P+GQ AV+L E++ +
Sbjct: 267 MYFEEFGSALHVDGFLATPE--AVQGSGLTSLLCHMKNTL-VIDQPNGQQAVVLVEESSR 323
Query: 321 Y--LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM 378
+R + D I S FTE+DV+ +F+ YGPV DVRIP QQKRM
Sbjct: 324 LAVAAHRGDNYDHNGI--------------SAFTEEDVNAHFSAYGPVQDVRIPYQQKRM 369
Query: 379 FGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYV 438
FGFVTF +TVK ILA+GNPH+VCGARVLVKPYR+K K D+K
Sbjct: 370 FGFVTFIHGETVKTILAEGNPHYVCGARVLVKPYRDKVKYTDKK---------------- 413
Query: 439 DMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAE--LQLVRKPMPNPPYFGGYM 496
+ D + + + + + ++ +++Q+Q +++L E LQ V KP G
Sbjct: 414 NADQQSRNARNNTDLASKLPEESMQQQQQRENYLQQKLVEFRLQAVDKPQ------DGAT 467
Query: 497 DGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQE--SEGLNLPDSPFA 554
D L + E +N G GD H +T+++ + S + P++PFA
Sbjct: 468 DVL-LKETNINL---------------GYILGDDDTHRKTSHSSRNTYSRAASFPENPFA 511
>gi|225436555|ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Vitis vinifera]
Length = 695
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 193/567 (34%), Positives = 269/567 (47%), Gaps = 138/567 (24%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLL----QEQEMIHLAMSPDVVIQEVVYKAKA 56
MD E+TRIVF+RI+ LDPEN +KI+GY+LL E+EMI LA P+ ++ ++ KAK
Sbjct: 1 MDSYEATRIVFSRIQALDPENASKIMGYILLIQDHGEKEMIRLAFGPETLLHNLILKAKT 60
Query: 57 ELQQLAMKSAS-------SPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQV 109
+L L+ ++ +PIS P N FNP SS P + R P+ Q+
Sbjct: 61 QLGILSNTPSTPTSPSPFNPISKPTRLPTNN---GFNPSSSWPVSGFSDLRSPNSTTAQL 117
Query: 110 T-------NKNNSDFVALGYS---------------------DSIN---ELQSQTQFLSL 138
+ N SD + S D++ +LQ FL+
Sbjct: 118 SYAAVVNGATNVSDLGTVSSSPASIPYYNNCSSSNNSSVVCNDNVMDDYQLQDHLSFLND 177
Query: 139 EDQMEHV-----------NLGNT-------GFSSDCYYSDAALSNLGARAGRRYQSLNAE 180
+ E + + G T F+ CY SD S G
Sbjct: 178 ASKPEDLFDPRLELAMSPSFGETQLHRRSYSFNDACYGSDDGASGFG------------- 224
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELE 240
K C YF +GFCK+G+ C++ HG ++S ++ + SPG L+ E E
Sbjct: 225 --WKPCLYFARGFCKNGNTCKFLHGGFADSVEASSAASA------AIVGSPGKLDGFEQE 276
Query: 241 IIELLKARRGNPISIASLPMLYYE-KYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNS 299
++ + R +++AS M Y K + E+QR A
Sbjct: 277 MLRSQQQR----LAVASQLMAGLNFPYNKCMNFFMQQNETQRSAAA-------------- 318
Query: 300 VRLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQIYLTFPAESTFTE 353
A+++ E+ K+ R ER+D G + GSRQIYLTFPA+STF E
Sbjct: 319 -----------ALMMGEELHKFGRCRPERNDFSGMGLGGAVNPGSRQIYLTFPADSTFRE 367
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DVSNYF+ +GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC +RVLVKPY+
Sbjct: 368 EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 427
Query: 414 EKSKLVDRKYQ------------ERMESPMYFSPQYVDMDS--ELHSFSRGC-ETSRFIR 458
EK K+ ++K Q ER E SP +D +LH +R T +
Sbjct: 428 EKGKVPEKKQQHQQQQQQQQQQLERGEYSTCSSPSGIDPREPYDLHLGARMFYNTQEMLL 487
Query: 459 KQLLEEQ---EQAFELERRRLAELQLV 482
++ LEEQ +QA EL+ RRL LQL+
Sbjct: 488 RRKLEEQADLQQAIELQGRRLMNLQLL 514
>gi|302807700|ref|XP_002985544.1| hypothetical protein SELMODRAFT_45393 [Selaginella moellendorffii]
gi|300146750|gb|EFJ13418.1| hypothetical protein SELMODRAFT_45393 [Selaginella moellendorffii]
Length = 197
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 155/213 (72%), Gaps = 16/213 (7%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+++GFCKHGS+CR+ H ++ D SP SLE+L+ E+ E
Sbjct: 1 KPCVYYSRGFCKHGSSCRFSHDHIA---------------GDGSSPSPSSLERLDRELQE 45
Query: 244 LLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI 303
LL +R +P+SIA+LP LYYE++G+ LQA GYLTESQRHGK+GY+LT+LL++LK S+ +I
Sbjct: 46 LLSSRT-SPVSIAALPQLYYERFGRPLQAEGYLTESQRHGKSGYNLTRLLSKLKGSITVI 104
Query: 304 DRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTY 363
DRPHGQHAV+LAEDA K+ E D + SRQIYLTFPAES+F+EDDVS +F Y
Sbjct: 105 DRPHGQHAVVLAEDAHKFATFAGEHYDLSGVNPSSRQIYLTFPAESSFSEDDVSTHFRAY 164
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GPV DVRIP QQKRMFGFVTF +TVK++L++
Sbjct: 165 GPVQDVRIPFQQKRMFGFVTFVYPETVKIVLSE 197
>gi|147807899|emb|CAN62156.1| hypothetical protein VITISV_021251 [Vitis vinifera]
Length = 697
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 193/569 (33%), Positives = 269/569 (47%), Gaps = 140/569 (24%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLL----QEQEMIHLAMSPDVVIQEVVYKAKA 56
MD E+TRIVF+RI+ LDPEN +KI+GY+LL E+EMI LA P+ ++ ++ KAK
Sbjct: 1 MDSYEATRIVFSRIQALDPENASKIMGYILLIQDHGEKEMIRLAFGPETLLHNLILKAKT 60
Query: 57 ELQQLAMKSAS-------SPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQV 109
+L L+ ++ +PIS P N FNP SS P + R P+ Q+
Sbjct: 61 QLGILSNTPSTPTSPSPFNPISKPTRLPTNN---GFNPSSSWPVSGFSDLRSPNSTTAQL 117
Query: 110 T-------NKNNSDFVALGYS---------------------DSIN---ELQSQTQFLSL 138
+ N SD + S D++ +LQ FL+
Sbjct: 118 SYAAVVNGATNVSDLGTVSSSPASIPYYNNCSGSNNSSVVCNDNVMDDYQLQDHLSFLND 177
Query: 139 EDQMEHV-----------NLGNT-------GFSSDCYYSDAALSNLGARAGRRYQSLNAE 180
+ E + + G T F+ CY SD S G
Sbjct: 178 ASKPEDLFDPRLELAMSPSFGETQLHRRSYSFNDACYGSDDGASGFG------------- 224
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELE 240
K C YF +GFCK+G+ C++ HG ++S ++ + SPG L+ E E
Sbjct: 225 --WKPCLYFARGFCKNGNTCKFLHGGFADSVEASSAASA------AIVGSPGKLDGFEQE 276
Query: 241 IIELLKARRGNPISIASLPMLYYE-KYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNS 299
++ + R +++AS M Y K + E+QR A
Sbjct: 277 MLRSQQQR----LAVASQLMAGLNFPYNKCMNFFMQQNETQRSAAA-------------- 318
Query: 300 VRLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQIYLTFPAESTFTE 353
A+++ E+ K+ R ER+D G + GSRQIYLTFPA+STF E
Sbjct: 319 -----------ALMMGEELHKFGRCRPERNDFSGMGLGGAVNPGSRQIYLTFPADSTFRE 367
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DVSNYF+ +GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC +RVLVKPY+
Sbjct: 368 EDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 427
Query: 414 EKSKLVDRKYQ--------------ERMESPMYFSPQYVDMDS--ELHSFSRGC-ETSRF 456
EK K+ ++K Q ER E SP +D +LH +R T
Sbjct: 428 EKGKVPEKKQQHQQQQQQQQQQQQLERGEYSTCSSPSGIDPREPYDLHLGARMFYNTQEM 487
Query: 457 IRKQLLEEQ---EQAFELERRRLAELQLV 482
+ ++ LEEQ +QA EL+ RRL LQL+
Sbjct: 488 LLRRKLEEQADLQQAIELQGRRLMNLQLL 516
>gi|356531625|ref|XP_003534377.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Glycine max]
Length = 700
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 217/662 (32%), Positives = 317/662 (47%), Gaps = 146/662 (22%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIVF+RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDGYEATRIVFSRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
Query: 58 L---QQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYW--------- 105
L ++ P S N S + + + P ++ PS W
Sbjct: 61 LGLPSNSPPTPSTPPSPSPFLSRQNSTSSRLSGINIPPALTIPN---PSSWPTMSDDLMS 117
Query: 106 -DHQVTNKNNSD----FVALGYSDSINELQSQTQFLSLEDQMEHVNLGN---TGFSS--- 154
+H V + S + A G SD I++ Q L+DQ+ +N G+ T F+
Sbjct: 118 PNHLVVGSSTSSSSLPYYANGGSDPIDDFQ-------LQDQLSFLNDGSPTSTAFAHKTN 170
Query: 155 -DCYY----SDAALS-------------NLGARAGRRYQSLN----------AELPVKTC 186
D +Y SD + S G RR S+N + L K C
Sbjct: 171 PDLFYPTNNSDLSSSPTTAVDPTLFPSYGWGGSIHRRSCSVNDACLGSEDPSSGLGWKPC 230
Query: 187 HYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLK 246
YF +G+CK+G++CR+ HG + ++ + SPG +E +E + ELL+
Sbjct: 231 LYFARGYCKNGTSCRFLHGGIGDADGGGAAAM---------VGSPGKIEMME-QCHELLR 280
Query: 247 ARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRP 306
++ S+ + L A L S + S+ LL + +N +
Sbjct: 281 SK-----SVQQ----------QRLAAASQLMASSTFPYSPKSMNFLLQQQQNDTQRA--- 322
Query: 307 HGQHAVILAEDAPKYLENRNERSD-----PGPIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
A++++ED K+ +R ER+D P + SRQIYLTFPA+STF E+DVSNYF+
Sbjct: 323 -AAAALMMSEDLHKFGRSRLERNDFSLNSPVMVNPASRQIYLTFPADSTFREEDVSNYFS 381
Query: 362 TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
YGPV DVRIP QQKRMFGFVTF +TVK+IL+KGNPHFVC ARVLVKPY+EK K+ D+
Sbjct: 382 IYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDK 441
Query: 422 KYQERME----SPMYFSPQYVDMDSELHSFSRG---CETSRFIRKQLLEEQ---EQAFEL 471
K Q++++ SP +P +D + G T + ++ LEEQ +QA EL
Sbjct: 442 KQQQQVDRGDFSPCG-TPTGLDARDQFDLQLGGRMLYNTQDMLWRRKLEEQADLQQALEL 500
Query: 472 ERRRLAELQLVR------------KPMPNPPYFGGYMDGLKISEDRLNFPSAER------ 513
+ RRL LQL+ P+P+P + + + +N S +
Sbjct: 501 QSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNIVPSFHINSESPKESGSTSA 560
Query: 514 -------------IDYLIG---VLN--NGSTTGDRVKHVETNYTD-QESEGLNLPDSPFA 554
++ +G V+N NG G+ + + D QE NLPDSPFA
Sbjct: 561 PASTASVSAGQQPVNISVGKEVVVNGENGYKEGNGKQSSSHDDCDLQECLEHNLPDSPFA 620
Query: 555 NP 556
+P
Sbjct: 621 SP 622
>gi|302767304|ref|XP_002967072.1| hypothetical protein SELMODRAFT_439924 [Selaginella moellendorffii]
gi|300165063|gb|EFJ31671.1| hypothetical protein SELMODRAFT_439924 [Selaginella moellendorffii]
Length = 502
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 193/596 (32%), Positives = 284/596 (47%), Gaps = 148/596 (24%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E TR+++ R++ LDP +V+KIIGYLLLQ EQ+M+ +A+ D ++ VV KAK E
Sbjct: 1 MDPYELTRMLYARVQALDPRHVSKIIGYLLLQDEAEQDMLRMALGSDALLFSVVDKAKQE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L +SPS N+ + + PFS RP P + +DHQ+ ++
Sbjct: 61 LG----------LSPSPNAHFDHPA----PFS-RPEHPP--FHFGTAFDHQL--QSTYHL 101
Query: 118 VALGYSDSIN-------ELQSQTQFL---SLEDQMEHVNLGNTG-FSSDCYYSDA----- 161
+ + +N +LQ Q + + S++D +H L G F +D +Y +
Sbjct: 102 RDVYHPPLVNSHVPFQKQLQQQAELMNRPSIQDTYQHQPLFGAGVFPNDHFYPETFAFLN 161
Query: 162 ---------------------ALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNC 200
+LS G+ S N+ K C Y+++G CKHGS C
Sbjct: 162 RNRLKQQKQQQQKSDEHDLMLSLSEHGSPNSSSSSSNNSSHAWKPCVYYSRGHCKHGSGC 221
Query: 201 RYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPM 260
R+ H +P+ + + +LE+LELEI ELL+AR+ +P+ I+ LP
Sbjct: 222 RFLH--------------TPNSLGIEEHGTESALERLELEIQELLRARK-SPVPISLLPQ 266
Query: 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
+Y+E++G L G + RL +S L RP+GQ AV+L
Sbjct: 267 MYFEEFGSALHVDG--------KPIDLLSSPSCMRLTSSSLL--RPNGQQAVVL------ 310
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
IYLTFPAES FTE+DV+ +F+ YGPV DVRIP QQKRMFG
Sbjct: 311 --------------------IYLTFPAESAFTEEDVNAHFSAYGPVQDVRIPYQQKRMFG 350
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDM 440
FVTF A+TVK ILA+GNPH+VCGARVLVKPYR+K K D+K +
Sbjct: 351 FVTFIHAETVKTILAEGNPHYVCGARVLVKPYRDKVKYTDKK----------------NA 394
Query: 441 DSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAE--LQLVRKPMPNPPYFGGYMDG 498
D + + + + + ++ +++Q+Q ++RL E LQ V KP G D
Sbjct: 395 DQQSRNVRNNTDLASKLLEESMQQQQQRENYLQQRLVEFRLQAVDKPQ------DGATDV 448
Query: 499 LKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFA 554
L + E +N +G + T + H N S + P++PFA
Sbjct: 449 L-LKETNIN----------LGYILEDDDTHRKTSHSNRNTY---SRAASFPENPFA 490
>gi|302810669|ref|XP_002987025.1| hypothetical protein SELMODRAFT_45395 [Selaginella moellendorffii]
gi|300145190|gb|EFJ11868.1| hypothetical protein SELMODRAFT_45395 [Selaginella moellendorffii]
Length = 197
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 155/213 (72%), Gaps = 16/213 (7%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+++GFCKHGS+CR+ H ++ D SP SLE+L+ E+ E
Sbjct: 1 KPCVYYSRGFCKHGSSCRFSHDHIT---------------GDGSSPSPSSLERLDRELQE 45
Query: 244 LLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI 303
LL +R +P+SIA+LP LYYE++G+ LQA GYLTESQRHGK+GY+LT+LL++LK S+ +I
Sbjct: 46 LLSSRT-SPVSIAALPQLYYERFGRPLQAEGYLTESQRHGKSGYNLTRLLSKLKGSITVI 104
Query: 304 DRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTY 363
DRPHGQHAV+LAEDA K+ E D + SRQIYLTFPAES+F+EDDVS +F Y
Sbjct: 105 DRPHGQHAVVLAEDAHKFATFAGEHYDLSGVNPSSRQIYLTFPAESSFSEDDVSIHFRAY 164
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GPV DVRIP QQKRMFGFVTF +TVK++L++
Sbjct: 165 GPVQDVRIPFQQKRMFGFVTFVYPETVKIVLSE 197
>gi|226507390|ref|NP_001152488.1| nucleic acid binding protein [Zea mays]
gi|195656755|gb|ACG47845.1| nucleic acid binding protein [Zea mays]
Length = 653
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 201/627 (32%), Positives = 290/627 (46%), Gaps = 114/627 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKAR-- 58
Query: 58 LQQLAMKSASSPISP-SMNSPVNEVSFQFN----------------------------PF 88
+ L + + P +P S+ + F + F
Sbjct: 59 -KDLGLLPSPGPGTPTSVTAAATHSPFLLSRQNSGRCGAGTAPSPLSVSSPSSWAPPPHF 117
Query: 89 SSRPPVSPAGCRVPSYWDHQVT-----NKNNSDFVALGYSDSINELQSQTQFLSLEDQME 143
S V G + ++ N S F A G ++ELQ Q Q L D
Sbjct: 118 SRTNSVVSNGAPAEALAADLMSPAAAGNAPPSPFFAAG-EPLLDELQLQEQLAFLSDAAA 176
Query: 144 HVNLGNTGFSSDC----------YYSDAALSNLGARAGRRYQSLNAELPV--------KT 185
+ +S+C ++ AL G R S +EL + K
Sbjct: 177 GGHQLPLFDASECRSPGSGDAAGFFPYGALGWANGGPGHRRSSSVSELCLGGADGLGWKP 236
Query: 186 CHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELL 245
C Y+ +G+CK+GS CR+ HG +++ T + LE+ +I+
Sbjct: 237 CLYYARGYCKNGSACRFVHGGLTDDATAKMDTAT--------------LEQQCQDILLRS 282
Query: 246 KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDR 305
K++R +A+ P Y G V + T K L + + R+
Sbjct: 283 KSQR-----LAAFP---YSPTGSVPGSPSAAT------KCLSLLLHQQQQQNENQRVAAA 328
Query: 306 PHGQHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTY 363
++ +DA K++ R +R+D +V GSRQIYLTFPA+STF E+DVSNYF+ Y
Sbjct: 329 AAAAALMLGGDDAHKFIGRPRLDRADLASLVNPGSRQIYLTFPADSTFREEDVSNYFSIY 388
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--R 421
GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D R
Sbjct: 389 GPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYR 448
Query: 422 KYQERMESPMYFSPQYVDMDS---ELHSFS-----RGCETSRFIRKQLLEEQEQAFELER 473
K Q + E + F +D +LH + + ++ LEEQ+QA EL+
Sbjct: 449 KQQLQGERAVDFFSNGLDGRENHLDLHQLGARMLQHSHSANEMLLRRKLEEQQQAMELQS 508
Query: 474 RRLAELQLVR-KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVK 532
RRL LQL+ KP +P G G P+ +D S+ GD
Sbjct: 509 RRLMGLQLLDLKPRASPSPIGNMPLG----------PTQRAVDSPPDSGREESSAGD--- 555
Query: 533 HVETNYTDQESEGLNLPDSPFANPIAS 559
N ++S NLPDSPFA+P S
Sbjct: 556 -ASPNADSEQSAEHNLPDSPFASPTRS 581
>gi|302770004|ref|XP_002968421.1| hypothetical protein SELMODRAFT_65612 [Selaginella moellendorffii]
gi|300164065|gb|EFJ30675.1| hypothetical protein SELMODRAFT_65612 [Selaginella moellendorffii]
Length = 204
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 158/220 (71%), Gaps = 19/220 (8%)
Query: 180 ELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLEL 239
E P K C YF KGFCK+GS+CR+ H + + SP D L S+E+LE
Sbjct: 1 EDPPKPCMYFAKGFCKNGSSCRFIHD------SALLQSDSPP--KDQFL----SMERLEF 48
Query: 240 EIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNS 299
++ ELL++R+G PIS++SLP +Y+EKYG+ L+A GY++ESQRH K Y+LTKLL++ + S
Sbjct: 49 QLQELLRSRKGVPISVSSLPQIYFEKYGRWLEADGYVSESQRHAKPSYTLTKLLSKFQ-S 107
Query: 300 VRLIDRPHGQHAVILAEDAPKYLENR---NERSDPGPIVTGSRQIYLTFPAESTFTEDDV 356
V +++RPH QHA++LAED PKY ++ +E +DP P SRQIYLTFP +S F+E+DV
Sbjct: 108 VTVVERPHRQHALMLAEDVPKYSAHKVDLDECNDPSPC---SRQIYLTFPCDSNFSEEDV 164
Query: 357 SNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
+ +F YGPV+DVRIP Q KRMFGFVTF A+TV+MILA+
Sbjct: 165 ATHFRAYGPVEDVRIPTQHKRMFGFVTFTYAETVRMILAE 204
>gi|302774330|ref|XP_002970582.1| hypothetical protein SELMODRAFT_65615 [Selaginella moellendorffii]
gi|300162098|gb|EFJ28712.1| hypothetical protein SELMODRAFT_65615 [Selaginella moellendorffii]
Length = 205
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 154/220 (70%), Gaps = 18/220 (8%)
Query: 180 ELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLEL 239
E P K C YF KGFCK+GS+CR+ H + + SP D L S+E+LE
Sbjct: 1 EDPPKPCMYFAKGFCKNGSSCRFIHD------SALLQSDSPP--KDQFL----SMERLEF 48
Query: 240 EIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNS 299
++ ELL++R+G PIS++SLP +Y+EKYG+ L+A GY++ESQRH K GY+LTKLL+ L +
Sbjct: 49 QLQELLRSRKGVPISVSSLPQIYFEKYGRWLEADGYVSESQRHAKPGYTLTKLLSNLYHF 108
Query: 300 VRLIDRPHGQHAVILAEDAPKYLENR---NERSDPGPIVTGSRQIYLTFPAESTFTEDDV 356
RPH QHA++LAED PKY ++ +E +DP P SRQIYLTFP +S F+E+DV
Sbjct: 109 FLSFPRPHRQHALMLAEDVPKYSAHKVDLDECNDPSPC---SRQIYLTFPCDSNFSEEDV 165
Query: 357 SNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
+ +F YGPV+DVRIP Q KRMFGFVTF A+TV+MILA+
Sbjct: 166 ATHFRAYGPVEDVRIPTQHKRMFGFVTFTYAETVRMILAE 205
>gi|38230504|gb|AAR14273.1| predicted protein [Populus tremula x Populus alba]
Length = 705
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 188/554 (33%), Positives = 275/554 (49%), Gaps = 113/554 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD +TRIVF+RI+ LDPEN +KI+G LL+Q E+EMI LA P+ ++ V+ KA+
Sbjct: 1 MDAYGATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKAR-- 58
Query: 58 LQQLAMKSASS-----------------PISPSMNSPVNEVSFQFNP----FSSRPPVSP 96
++L + S ++ IS NS + + F P + S
Sbjct: 59 -KELGLSSPTNLSTSPSSPSPLYSSNPVAISRQNNSSTSRLGFNIPPSLAIPNPSSNNSS 117
Query: 97 AGCRVPSYWDHQVTNKNNS-----------DFVALGYSDSINE--LQSQTQFLSLEDQME 143
+ +P+ D ++ ++S G SD ++E LQ Q FL + +
Sbjct: 118 SWSDLPNPDDLMISPNDSSLNPASVPSYANGVRGGGESDLMDEFHLQDQLSFLMIIHK-- 175
Query: 144 HVNLGNTGFSSDCYY------------SDAAL--SNLGARAGRRYQSL---------NAE 180
+ SSD +Y SD+ + S G RR S+ N+
Sbjct: 176 -----SRSKSSDLFYPQLDALSSPTGASDSMMFPSYWGGSVHRRSCSVSDVLGSEDPNSG 230
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLEL- 239
+ C YF +G+CK+GSNCR+ HG + E DG + SP S K+++
Sbjct: 231 FGWRPCLYFARGYCKNGSNCRFVHGGLGEL----------DGAG--VVGSPNSNNKIDMM 278
Query: 240 -EIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKN 298
+ ELL+++ + +A+ L + + S + S+ LL + +N
Sbjct: 279 DQCHELLRSKSAHQQRLAAASQL-------MSGSAASFPYSPK------SMNFLLQQQQN 325
Query: 299 SVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSN 358
+ A+++ ED K+ +R +R+D + SRQIYLTFPA+STF E+DVSN
Sbjct: 326 DSQRA----AATALMMGEDMHKFGRSRLDRND--LVNPASRQIYLTFPADSTFREEDVSN 379
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC ARVLVKPY+EK K+
Sbjct: 380 YFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 439
Query: 419 VDRKYQERMESPMYFSP--QYVDMDS-ELHSFSRGC----ETSRFIRKQLLEEQ---EQA 468
D+K Q++ FSP +DS + G T + ++ LE Q +QA
Sbjct: 440 PDKKQQQQQVERGEFSPCGTPTGLDSRDPFDLQLGAGMFYNTQDMLWRRKLEGQADLQQA 499
Query: 469 FELERRRLAELQLV 482
EL+ RRL LQL+
Sbjct: 500 LELQSRRLMSLQLL 513
>gi|356497343|ref|XP_003517520.1| PREDICTED: zinc finger CCCH domain-containing protein 55-like
[Glycine max]
Length = 646
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 179/541 (33%), Positives = 258/541 (47%), Gaps = 112/541 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLL--LQEQEMIHLAMSPDVVIQEVVYKAKAEL 58
M E+T +V ++IK DPEN +KI+GYLL L+E E+I +A SPD V+Q +V + K+ L
Sbjct: 1 MGSCEATNVVLSKIKNFDPENASKIMGYLLMNLEESELIRVACSPDTVLQTLVLRVKSHL 60
Query: 59 ------------------QQLAMKSASSPISPSMNSPVNEVSFQFNP-----------FS 89
+A + +S S P N F NP F
Sbjct: 61 GLTLSTPSSPSQFPPSPLNPIARLTGTSSNPFSRGGPTNGFDFTRNPASPSSHSHAWNFP 120
Query: 90 SRPPVSPAGCRVPSYWD-HQVTNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLG 148
+ P+SP + SY + ++ + N D D ++E Q F L D ++ +L
Sbjct: 121 NNNPISPKSTPLLSYDNIRALSPRVNGD------CDFVDEQQVNEYFPFLNDSSKNEDLV 174
Query: 149 N----TGFSSDCYYS-DAAL---SNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNC 200
+ G + ++S D+ L S + G L K C YF +GFCK+G+NC
Sbjct: 175 DPRLELGVGAQNWHSGDSHLHRRSYSASDVGFGCDEAAPGLGYKPCLYFARGFCKNGTNC 234
Query: 201 RYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLP- 259
++ HG ++S + G SP LE +E + E ++ + IAS P
Sbjct: 235 KFLHGAFTDSLDAIVG-------------SPSKLEGME-QREEFVRFKAPQLQRIASGPS 280
Query: 260 MLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAP 319
EKY + L + ESQR A ++ E+
Sbjct: 281 AAAREKYYEFL-----MQESQRAAA--------------------------AFMMGEEFY 309
Query: 320 KYLENRNERSDPGPIVTG------SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC 373
+ +R ER+D ++G SRQIYLTFPAESTF ++DVS YF+ +GPV DVRIP
Sbjct: 310 NFGWDRPERNDFLAAISGEKPNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPY 369
Query: 374 QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ------ERM 427
QQKRMFGFVTF +TV++IL+KGNPHF+C +RVLVKPY+EK K+ D++ Q ER
Sbjct: 370 QQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQQQQQQQLERG 429
Query: 428 ESPMYFSPQYVDMDSELHSFSRGCET-----SRFIRKQLLEEQE--QAFELERRRLAELQ 480
+ SP E + F G +R+++ E+ E Q EL+ RRL LQ
Sbjct: 430 DLSPCLSPSGFG-SKEPYDFHLGARMLYNPHDILLRRKIEEQAELQQVLELQERRLKNLQ 488
Query: 481 L 481
L
Sbjct: 489 L 489
>gi|414888141|tpg|DAA64155.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 652
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 202/635 (31%), Positives = 293/635 (46%), Gaps = 122/635 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKAR-- 58
Query: 58 LQQLAMKSASSPISP-SMNSPVNEVSFQFN----------------------------PF 88
+ L + + P +P S+ + F + F
Sbjct: 59 -KDLGLLPSPGPGTPTSVTAAATHSPFLLSRQNSGRCGAGTAPSPLSVSSPSSWAPPPHF 117
Query: 89 SSRPPVSPAGCRVPSYWDHQVT-----NKNNSDFVALGYSDSINELQSQTQFLSLEDQME 143
S V G + ++ N S F A G ++ELQ Q Q L D
Sbjct: 118 SRTNSVVSNGAPAEALAADLMSPAAAGNAPPSPFFAAG-EPLLDELQLQEQLAFLSDAAA 176
Query: 144 HVNLGNTGFSSDC----------YYSDAALSNLGARAGRRYQSLNAELPV--------KT 185
+ +S+C ++ AL G R S +EL + K
Sbjct: 177 GGHQLPLFDASECRSPGSGDAAGFFPYGALGWANGGPGHRRSSSVSELCLGGADGLGWKP 236
Query: 186 CHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELL 245
C Y+ +G+CK+GS CR+ HG +++ T + LE+ +I+
Sbjct: 237 CLYYARGYCKNGSACRFVHGGLTDDATAKMDTAT--------------LEQQCQDILLRS 282
Query: 246 KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDR 305
K++R +A+ P Y G V + T K L + + R+
Sbjct: 283 KSQR-----LAAFP---YSPTGSVPGSPSAAT------KCLSLLLHQQQQQNENQRVAAA 328
Query: 306 PHGQHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTY 363
++ +DA K++ R +R+D +V GSRQIYLTFPA+STF E+DVSNYF+ Y
Sbjct: 329 AAAAALMLGGDDAHKFIGRPRLDRADLASLVNPGSRQIYLTFPADSTFREEDVSNYFSIY 388
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--R 421
GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D R
Sbjct: 389 GPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYR 448
Query: 422 KYQERMESPMYFSPQYVDMDS---ELHSF-SRGCETSRFIRKQLLEEQ------------ 465
K Q + E + F +D +LH +R + S + LL +
Sbjct: 449 KQQLQGERAVDFFSNGLDGRENHLDLHQLGARMLQHSHSANEMLLRRKLEEQQQAAAAEL 508
Query: 466 EQAFELERRRLAELQLVR-KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNG 524
+QA EL+ RRL LQL+ KP +P G G P+ +D
Sbjct: 509 QQAMELQSRRLMRLQLLDLKPRASPSPIGSMPLG----------PTQRAVDSPPDSGREE 558
Query: 525 STTGDRVKHVETNYTDQESEGLNLPDSPFANPIAS 559
S+ GD + + +DQ +E NLPDSPFA+P S
Sbjct: 559 SSAGDASPNAD---SDQSAE-HNLPDSPFASPTRS 589
>gi|414888142|tpg|DAA64156.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 661
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 202/635 (31%), Positives = 293/635 (46%), Gaps = 122/635 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKAR-- 58
Query: 58 LQQLAMKSASSPISP-SMNSPVNEVSFQFN----------------------------PF 88
+ L + + P +P S+ + F + F
Sbjct: 59 -KDLGLLPSPGPGTPTSVTAAATHSPFLLSRQNSGRCGAGTAPSPLSVSSPSSWAPPPHF 117
Query: 89 SSRPPVSPAGCRVPSYWDHQVT-----NKNNSDFVALGYSDSINELQSQTQFLSLEDQME 143
S V G + ++ N S F A G ++ELQ Q Q L D
Sbjct: 118 SRTNSVVSNGAPAEALAADLMSPAAAGNAPPSPFFAAG-EPLLDELQLQEQLAFLSDAAA 176
Query: 144 HVNLGNTGFSSDC----------YYSDAALSNLGARAGRRYQSLNAELPV--------KT 185
+ +S+C ++ AL G R S +EL + K
Sbjct: 177 GGHQLPLFDASECRSPGSGDAAGFFPYGALGWANGGPGHRRSSSVSELCLGGADGLGWKP 236
Query: 186 CHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELL 245
C Y+ +G+CK+GS CR+ HG +++ T + LE+ +I+
Sbjct: 237 CLYYARGYCKNGSACRFVHGGLTDDATAKMDTAT--------------LEQQCQDILLRS 282
Query: 246 KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDR 305
K++R +A+ P Y G V + T K L + + R+
Sbjct: 283 KSQR-----LAAFP---YSPTGSVPGSPSAAT------KCLSLLLHQQQQQNENQRVAAA 328
Query: 306 PHGQHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTY 363
++ +DA K++ R +R+D +V GSRQIYLTFPA+STF E+DVSNYF+ Y
Sbjct: 329 AAAAALMLGGDDAHKFIGRPRLDRADLASLVNPGSRQIYLTFPADSTFREEDVSNYFSIY 388
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--R 421
GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D R
Sbjct: 389 GPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYR 448
Query: 422 KYQERMESPMYFSPQYVDMDS---ELHSF-SRGCETSRFIRKQLLEEQ------------ 465
K Q + E + F +D +LH +R + S + LL +
Sbjct: 449 KQQLQGERAVDFFSNGLDGRENHLDLHQLGARMLQHSHSANEMLLRRKLEEQQQAAAAEL 508
Query: 466 EQAFELERRRLAELQLVR-KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNG 524
+QA EL+ RRL LQL+ KP +P G G P+ +D
Sbjct: 509 QQAMELQSRRLMRLQLLDLKPRASPSPIGSMPLG----------PTQRAVDSPPDSGREE 558
Query: 525 STTGDRVKHVETNYTDQESEGLNLPDSPFANPIAS 559
S+ GD + + +DQ +E NLPDSPFA+P S
Sbjct: 559 SSAGDASPNAD---SDQSAE-HNLPDSPFASPTRS 589
>gi|357471117|ref|XP_003605843.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355506898|gb|AES88040.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
Length = 666
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 184/509 (36%), Positives = 262/509 (51%), Gaps = 63/509 (12%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RIK +DPEN + I+G LL +E +EMI LA+SP+ +I V++KA+ E
Sbjct: 1 MDGYEATKMVFSRIKSMDPENASNIMGLLLSKEHGEKEMIRLALSPESLIHSVIFKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVS----PAGCRVPS-YWDHQVTNK 112
L ++ S + SP + N +S S P +P+ W T
Sbjct: 61 LGLPCSNNSPPTPSSTSPSPSPNFLSRQNSSTSSRLSSGFNLPPSLTIPNPSWGATTTTM 120
Query: 113 NNSD-FVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSS----DCYYSDAALSNLG 167
+ SD F SD I++ Q Q Q L D + + G G SS C +DA L
Sbjct: 121 SMSDQFQNHDDSDPIDDFQLQDQLSFLNDGSD-PSYGWGGNSSLHRRSCSVNDAYL---- 175
Query: 168 ARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDH 227
AG S A L K C YF +G+CK+G++CR+ HG S + + G
Sbjct: 176 --AGSEDPS--AGLGWKPCLYFARGYCKNGTSCRFLHGDASAAAAAIVG----------- 220
Query: 228 LFSPGSLEKLELEII-ELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAG 286
SP +E + + ELL+++ + A+ +++ + +L + G
Sbjct: 221 --SPNKIENMMDQYHHELLRSKSSHQQRFAA-----AAAASQLMASNSFLCSPK-----G 268
Query: 287 YSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQ 340
+ + +N + A+++ E+ K+ +R ER+D G I SRQ
Sbjct: 269 MNFLLQQQQNQNDTQRA----AAAALMMNEELHKFGRSRLERNDFSLYSPTGMINPASRQ 324
Query: 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPH 400
IYLTFPA+STF E+DVS YF+ +GPV DVRIP QQKRMFGFVTF +TVK IL+KGNPH
Sbjct: 325 IYLTFPADSTFREEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVFPETVKDILSKGNPH 384
Query: 401 FVCGARVLVKPYREKSKLVDRK--YQERMESPMYFSPQYVDMDSE--LHSFSR---GCET 453
FVC ARVLVKPY+EK K+ D+K Q+ SP VD + L R E
Sbjct: 385 FVCEARVLVKPYKEKGKIPDKKQLQQQGDFSPCRTPTGLVDARDQYDLQLAERMFYNTED 444
Query: 454 SRFIRKQLLEEQEQAFELERRRLAELQLV 482
+ RK+ E Q+QA E++RRRL LQL+
Sbjct: 445 MLWRRKEQAELQQQALEIQRRRLMGLQLL 473
>gi|222637701|gb|EEE67833.1| hypothetical protein OsJ_25610 [Oryza sativa Japonica Group]
Length = 696
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 196/620 (31%), Positives = 290/620 (46%), Gaps = 97/620 (15%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFN-PFSSRPPVSPAG-CRVPSYWDHQVTNKNNS 115
L L +P S S + F + S R +P+ + D ++ N
Sbjct: 61 LGLLPASGPGTPTSVSAAAAAAHSPFMLSRQNSGRCGTAPSPLSEMVGLGDELISPANGG 120
Query: 116 DFVA--LGYSDSINELQSQTQFLSLED-------QMEHVNLGNT----GFSSDCYYSDAA 162
+ G ++ELQ Q Q L + QM + G G + +
Sbjct: 121 GPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQMPMFDGGECRSPGGGDGGLFSYNLG 180
Query: 163 LSNLGARAGRRYQSLNA-------ELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMF 215
+N G RR S++ L K C Y+ +G+CK+GS CR+ HG
Sbjct: 181 WAN-GGPGHRRSASVSELCLGGADGLGWKPCLYYARGYCKNGSACRFVHG---------- 229
Query: 216 GQTSPDGFNDDHL--FSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAG 273
G DD P ++E+ + + K++R ++ A+ P Y G + +
Sbjct: 230 ------GLPDDAAGKMDPSAVEQQCQDFLIRSKSQR---LAAAAFP---YSPTGSLPGSP 277
Query: 274 GYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLEN-RNERSDPG 332
T+ R + L+ + ++A K++ R ER+D
Sbjct: 278 SAATKCLSLLLQQQQQQNESQRAAAAAALM---------LGGDEAHKFMGRPRLERADFA 328
Query: 333 PIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVK 391
++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK
Sbjct: 329 SMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVK 388
Query: 392 MILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ---ERMESPMYFSPQYVDMDS--ELHS 446
+ILAKGNPHF+C ARVLVKPY+EK K+ D+K ER++ +P +D ++H
Sbjct: 389 LILAKGNPHFICDARVLVKPYKEKGKVPDKKQHQPGERVDFSSCTTPTGLDARDPFDMHQ 448
Query: 447 F-SRGCETSRFIRKQLLEEQ----------EQAFELERRRLAELQLVR---------KPM 486
+R + S + LL + +QA EL RRL LQL+ P+
Sbjct: 449 LGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKSRAAAAPTPI 508
Query: 487 PNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVL------NNGSTTGDRVKHVETNYTD 540
NP F + + + P + + G L NG+ + + TD
Sbjct: 509 GNP--FSASQTAANATGE--SPPDSGELGKGSGFLLAHKKAVNGADKEESTGESSSPNTD 564
Query: 541 Q-ESEGLNLPDSPFANPIAS 559
+S NLPDSPFA+P S
Sbjct: 565 SDQSVEHNLPDSPFASPTKS 584
>gi|75328302|sp|Q84ZT0.1|C3H51_ORYSJ RecName: Full=Putative zinc finger CCCH domain-containing protein
51; Short=OsC3H51
gi|27817837|dbj|BAC55605.1| RRM-containing protein-like [Oryza sativa Japonica Group]
Length = 513
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 155/240 (64%), Gaps = 24/240 (10%)
Query: 186 CHY-FNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIEL 244
CH+ F +G+CK G NC+++HG V P+ N + SL KL++EI EL
Sbjct: 182 CHFHFFRGYCKKGVNCQFFHGSV------------PELHNPRQVHPFASLSKLDMEIREL 229
Query: 245 LKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLID 304
L P+++ LP +Y+EKYGK L+ G+LTESQ+HG+ G SLT LL L N++R+++
Sbjct: 230 LIGI-PPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVE 287
Query: 305 RPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSN 358
R HGQ+ V+L EDA K L + D G TGS QIY+TFP S FT+DDV N
Sbjct: 288 REHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVEN 344
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF +GPV VRIP Q+KRMFGFV+F +TV++IL+KG HF+CG RVLVK Y EKS+L
Sbjct: 345 YFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404
>gi|413957281|gb|AFW89930.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 433
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/428 (35%), Positives = 203/428 (47%), Gaps = 128/428 (29%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD SE + R+K+++PEN +KI+G +LL+E Q+M+ LA D + + AKA
Sbjct: 1 MDSSELHILALQRVKQVEPENASKILGCILLEEPDNQDMLQLAYGNDAEVHAKISHAKAM 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + +SSP +F ++ YW V NK ++
Sbjct: 61 LDAIVACCSSSP------------AFGYH-----------------YWP-PVPNKAQAEE 90
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYS--DAALSNLGARAGRRYQ 175
AL Q +H + G CYY+ +A + N G R
Sbjct: 91 YAL--------------------QPQHYSGGG------CYYASENALIYNGGGPPRSRLS 124
Query: 176 SLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLE 235
S + CHYF KG CK+G +C Y H + G+LE
Sbjct: 125 STR-----RPCHYFIKGICKNGQSCHYSH------------------HRQEAQVCSGALE 161
Query: 236 KLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLAR 295
KLELEIIELLK+R G P+SIASLP LY
Sbjct: 162 KLELEIIELLKSRHGQPLSIASLPTLYG-------------------------------- 189
Query: 296 LKNSVRLIDRPHGQHAVILAEDAPKYLE--NRNERSDPGPIVTGSRQIYLTFPAESTFTE 353
DRPHGQH V+LAEDA +Y E +R ER G + + S Q+YLTFP+ESTF E
Sbjct: 190 --------DRPHGQHYVVLAEDAGRYKELMSRGERG--GDMGSSSHQVYLTFPSESTFME 239
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DV+NYF YG V DVRIP Q+KRMFGFV+F + +TV IL PHF+ +RVLVK Y
Sbjct: 240 EDVANYFGLYGSVRDVRIPWQEKRMFGFVSFHNPETVNTILTMRIPHFIGESRVLVKRYI 299
Query: 414 EKSKLVDR 421
EKSK ++R
Sbjct: 300 EKSKCIER 307
>gi|297819906|ref|XP_002877836.1| hypothetical protein ARALYDRAFT_485553 [Arabidopsis lyrata subsp.
lyrata]
gi|297323674|gb|EFH54095.1| hypothetical protein ARALYDRAFT_485553 [Arabidopsis lyrata subsp.
lyrata]
Length = 539
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 172/490 (35%), Positives = 236/490 (48%), Gaps = 99/490 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KAK E
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 58 LQQLAMKSASSPIS--PSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNS 115
L M + SP S + SP N NP S +P Y + ++++ +
Sbjct: 61 LG--LMNCSRSPWSHQDELISPKNNRGSSLNPAS-----------LPFYANGGRSSRDLT 107
Query: 116 DFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQ 175
+ L ++++ S++ FL H G+ Y D+ L G
Sbjct: 108 NDFEL-----MDDVNSRSDFLG----SVHARSGSCVLDGLGYGGDSDLGFGGV------- 151
Query: 176 SLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLE 235
C YF +GFCK+G++CR+ H S+ + G S
Sbjct: 152 ---------PCSYFARGFCKNGASCRFVH---SDGGADLVGSPS---------------- 183
Query: 236 KLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLAR 295
IELL R N + P L + ++T S SL +
Sbjct: 184 -----RIELL---RSNSVP----PRLAHH----------FMTRS--------SLPSFSPK 213
Query: 296 LKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTED 354
N ++ D A+++ ++ K R ER D + SRQIYLTFPA+S F E+
Sbjct: 214 GVN-LQQNDIQRAAAALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFREE 272
Query: 355 DVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414
DVSNYF+T+GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+E
Sbjct: 273 DVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKE 332
Query: 415 KSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGC--ETSRFIRKQLLEEQEQAFELE 472
K K+ D KY+ + SP +D RG T + + E E+ EL+
Sbjct: 333 KGKVPD-KYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNTQDVLWRSKFE--EEILELQ 389
Query: 473 RRRLAELQLV 482
RRL LQL+
Sbjct: 390 SRRLMNLQLL 399
>gi|15231090|ref|NP_190763.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis
thaliana]
gi|79314761|ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis
thaliana]
gi|75337705|sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46;
Short=AtC3H46
gi|4678924|emb|CAB41315.1| putative protein [Arabidopsis thaliana]
gi|23297746|gb|AAN13016.1| unknown protein [Arabidopsis thaliana]
gi|222422911|dbj|BAH19442.1| AT3G51950 [Arabidopsis thaliana]
gi|332645345|gb|AEE78866.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis
thaliana]
gi|332645346|gb|AEE78867.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis
thaliana]
Length = 540
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 176/491 (35%), Positives = 236/491 (48%), Gaps = 100/491 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KAK E
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 58 LQQLAMKSASSPIS--PSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKN-N 114
L M + SP S + SP N NP S +P Y + ++++
Sbjct: 61 LG--LMNCSRSPWSHQDELISPKNNRGSSLNPAS-----------LPFYANGGRSSRDLT 107
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
+DF + D +N T FL H G+ Y D+ L G
Sbjct: 108 NDFELM---DDMN--SRSTDFLG----SVHARSGSCVLDGLGYGGDSDLGFGGV------ 152
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
C YF +GFCK+G++CR+ H S+ + G S
Sbjct: 153 ----------PCSYFARGFCKNGASCRFVH---SDGGADLVGSPS--------------- 184
Query: 235 EKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLA 294
IELL R N + P L + ++T R +S TK +
Sbjct: 185 ------RIELL---RSNSVP----PRLAHH----------FMT---RSSLPSFS-TKGVN 217
Query: 295 RLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTE 353
+N V+ A+++ ++ K R ER D + SRQIYLTFPA+S F E
Sbjct: 218 LQQNDVQ-----RAAAALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFRE 272
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DVSNYF+T+GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+
Sbjct: 273 EDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYK 332
Query: 414 EKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGC--ETSRFIRKQLLEEQEQAFEL 471
EK K+ D KY+ + SP +D RG T + + E E+ EL
Sbjct: 333 EKGKVPD-KYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNTQDVLWRSKFE--EEILEL 389
Query: 472 ERRRLAELQLV 482
+ RRL LQL+
Sbjct: 390 QSRRLMNLQLL 400
>gi|19423979|gb|AAL87320.1| unknown protein [Arabidopsis thaliana]
Length = 540
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 176/491 (35%), Positives = 236/491 (48%), Gaps = 100/491 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KAK E
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 58 LQQLAMKSASSPIS--PSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKN-N 114
L M + SP S + SP N NP S +P Y + ++++
Sbjct: 61 LG--LMNCSRSPWSHQDELISPKNNRGSSLNPAS-----------LPFYANGGRSSRDLT 107
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
+DF + D +N T FL H G+ Y D+ L G
Sbjct: 108 NDFELM---DDMN--SRSTDFLG----SVHARSGSCVLDGLGYGGDSDLGFGGV------ 152
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
C YF +GFCK+G++CR+ H S+ + G S
Sbjct: 153 ----------PCSYFARGFCKNGASCRFVH---SDGGADLVGSPS--------------- 184
Query: 235 EKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLA 294
IELL R N + P L + ++T R +S TK +
Sbjct: 185 ------RIELL---RSNSVP----PRLAHH----------FMT---RSSLPSFS-TKGVN 217
Query: 295 RLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTE 353
+N V+ A+++ ++ K R ER D + SRQIYLTFPA+S F E
Sbjct: 218 LQQNDVQ-----RAAAALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFRE 272
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DVSNYF+T+GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+
Sbjct: 273 EDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYK 332
Query: 414 EKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGC--ETSRFIRKQLLEEQEQAFEL 471
EK K+ D KY+ + SP +D RG T + + E E+ EL
Sbjct: 333 EKGKVPD-KYRTNQTTVRELSPTGLDSSPRDVLGGRGFYNNTQDVLWRSKFE--EEILEL 389
Query: 472 ERRRLAELQLV 482
+ RRL LQL+
Sbjct: 390 QSRRLMNLQLL 400
>gi|21594547|gb|AAM66020.1| unknown [Arabidopsis thaliana]
Length = 540
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 173/497 (34%), Positives = 233/497 (46%), Gaps = 112/497 (22%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KAK E
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 58 LQQLAMKSASSPIS--PSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKN-N 114
L M + SP S + SP N NP S +P Y + ++++
Sbjct: 61 LG--LMNCSRSPWSHQDELISPKNNRGSSLNPAS-----------LPFYANGGRSSRDLT 107
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
+DF + D +N T FL H G+ Y D+ L G
Sbjct: 108 NDFELM---DDMN--SRSTDFLG----SVHARSGSCVLDGLGYGGDSDLGFGGV------ 152
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
C YF +GFCK+G++CR+ H S+ + G S
Sbjct: 153 ----------PCSYFARGFCKNGASCRFVH---SDGGADLVGSPS--------------- 184
Query: 235 EKLELEIIELLKARRGNP------ISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYS 288
I+LL++ P ++ +SLP + G LQ + QR A
Sbjct: 185 ------RIDLLRSNSVPPRLAHHFMTRSSLP--SFSPKGVNLQQ----NDVQRAAAA--- 229
Query: 289 LTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPA 347
+++ ++ K R ER D + SRQIYLTFPA
Sbjct: 230 -----------------------LMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPA 266
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+S F E+DVSNYF+T+GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RV
Sbjct: 267 DSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRV 326
Query: 408 LVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGC--ETSRFIRKQLLEEQ 465
LVKPY+EK K+ D KY+ + SP +D RG T + + E
Sbjct: 327 LVKPYKEKGKVPD-KYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNTQDVLWRSKFE-- 383
Query: 466 EQAFELERRRLAELQLV 482
E+ EL+ RRL LQL+
Sbjct: 384 EEILELQSRRLMNLQLL 400
>gi|125559631|gb|EAZ05167.1| hypothetical protein OsI_27364 [Oryza sativa Indica Group]
Length = 721
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 197/645 (30%), Positives = 291/645 (45%), Gaps = 122/645 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFN--------------------------PFSSR 91
L L +P S + + F + FS
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 92 PPVS-PAGCRVPSYWDHQVTNKNNSDFVA--LGYSDSINELQSQTQFLSLED-------Q 141
+S AG + D ++ N + G ++ELQ Q Q L + Q
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180
Query: 142 MEHVNLGNT----GFSSDCYYSDAALSNLGARAGRRYQSLNA-------ELPVKTCHYFN 190
M + G G + + +N G RR S++ L K C Y+
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWAN-GGPGHRRSASVSELCLGGADGLGWKPCLYYA 239
Query: 191 KGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHL--FSPGSLEKLELEIIELLKAR 248
+G+CK+GS CR+ HG G DD P ++E+ + + K++
Sbjct: 240 RGYCKNGSACRFVHG----------------GLPDDAAGKMDPSAVEQQCQDFLIRSKSQ 283
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R ++ A+ P Y G + + T+ R + L+
Sbjct: 284 R---LAAAAFP---YSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALM----- 332
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ ++A K++ R ER+D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 333 ----LGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 388
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ-- 424
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+K
Sbjct: 389 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKKQHQP 448
Query: 425 -ERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------EQAFE 470
ER++ +P +D ++H +R + S + LL + +QA E
Sbjct: 449 GERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIE 508
Query: 471 LERRRLAELQLVR---------KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVL 521
L RRL LQL+ P+ NP F + + + P + + G L
Sbjct: 509 LHSRRLMGLQLLDFKSRAAAAPTPIGNP--FSASQTAANATGE--SPPDSGELGKGSGFL 564
Query: 522 ------NNGSTTGDRVKHVETNYTDQ-ESEGLNLPDSPFANPIAS 559
NG+ + + TD +S NLPDSPFA+P S
Sbjct: 565 LAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLPDSPFASPTKS 609
>gi|33146675|dbj|BAC80021.1| putative DAZ associated protein 1 [Oryza sativa Japonica Group]
Length = 682
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 197/645 (30%), Positives = 291/645 (45%), Gaps = 122/645 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFN--------------------------PFSSR 91
L L +P S + + F + FS
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 92 PPVS-PAGCRVPSYWDHQVTNKNNSDFVA--LGYSDSINELQSQTQFLSLED-------Q 141
+S AG + D ++ N + G ++ELQ Q Q L + Q
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180
Query: 142 MEHVNLGNT----GFSSDCYYSDAALSNLGARAGRRYQSLNA-------ELPVKTCHYFN 190
M + G G + + +N G RR S++ L K C Y+
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWAN-GGPGHRRSASVSELCLGGADGLGWKPCLYYA 239
Query: 191 KGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHL--FSPGSLEKLELEIIELLKAR 248
+G+CK+GS CR+ HG G DD P ++E+ + + K++
Sbjct: 240 RGYCKNGSACRFVHG----------------GLPDDAAGKMDPSAVEQQCQDFLIRSKSQ 283
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R ++ A+ P Y G + + T+ R + L+
Sbjct: 284 R---LAAAAFP---YSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALM----- 332
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ ++A K++ R ER+D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 333 ----LGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 388
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ-- 424
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+K
Sbjct: 389 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKKQHQP 448
Query: 425 -ERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------EQAFE 470
ER++ +P +D ++H +R + S + LL + +QA E
Sbjct: 449 GERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIE 508
Query: 471 LERRRLAELQLVR---------KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVL 521
L RRL LQL+ P+ NP F + + + P + + G L
Sbjct: 509 LHSRRLMGLQLLDFKSRAAAAPTPIGNP--FSASQTAANATGE--SPPDSGELGKGSGFL 564
Query: 522 ------NNGSTTGDRVKHVETNYTDQ-ESEGLNLPDSPFANPIAS 559
NG+ + + TD +S NLPDSPFA+P S
Sbjct: 565 LAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLPDSPFASPTKS 609
>gi|115452805|ref|NP_001050003.1| Os03g0329200 [Oryza sativa Japonica Group]
gi|122247068|sp|Q10LZ9.1|C3H23_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 23;
Short=OsC3H23
gi|108707944|gb|ABF95739.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108707945|gb|ABF95740.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548474|dbj|BAF11917.1| Os03g0329200 [Oryza sativa Japonica Group]
Length = 677
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 196/642 (30%), Positives = 282/642 (43%), Gaps = 121/642 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q+ +EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQLA--MKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNS 115
L L ++SSP P+ +SP +S Q + P S P + + N +
Sbjct: 61 LALLPPPQAASSSPTVPAAHSPF-LLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAA 119
Query: 116 D-------------------------FVALGYSDSINELQSQTQFLSLEDQMEHVNLGNT 150
D F G +++ + Q Q L D VN G+
Sbjct: 120 DEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGGVNPGHA 179
Query: 151 --------------GFSSDCYYSDAALSNLGARAGRRYQSLNAELPV-------KTCHYF 189
G S A +N G RR S+N EL + K C Y+
Sbjct: 180 LQAFDGAECRSPGPGESGGMLPYGLAWAN-GGPGHRRSASVN-ELCLGGDGFGWKPCLYY 237
Query: 190 NKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELL-KAR 248
+GFCK+GS CR+ HG G +DD + E+ + + L K++
Sbjct: 238 ARGFCKNGSTCRFVHG----------------GLSDDAAMDATTAEQQQCQDFLLRSKSQ 281
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R P + P G L S SL + N +
Sbjct: 282 RLGPAAFPFTPT-------------GSLPASPSATSKCLSLLLQQQQQHNDNQRAAA--A 326
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ ++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 327 ALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 386
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 426
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+ +++
Sbjct: 387 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQ 446
Query: 427 MESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------EQAFELER 473
SP +D + H +R + S + +L + +QA +L
Sbjct: 447 QGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHS 506
Query: 474 RRLAELQLV------------RKPMPNP-PYFGGYMDGLKISEDRLNFPSAERIDYLI-- 518
RRL LQL+ M P P + G + + P + +
Sbjct: 507 RRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASC 566
Query: 519 -----GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFAN 555
G + NG D V N +S NLPDSPFA+
Sbjct: 567 GSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHNLPDSPFAS 608
>gi|125600867|gb|EAZ40443.1| hypothetical protein OsJ_24897 [Oryza sativa Japonica Group]
Length = 432
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 155/249 (62%), Gaps = 33/249 (13%)
Query: 186 CHY-FNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIEL 244
CH+ F +G+CK G NC+++HG V P+ N + SL KL++EI EL
Sbjct: 138 CHFHFFRGYCKKGVNCQFFHGSV------------PELHNPRQVHPFASLSKLDMEIREL 185
Query: 245 LKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLID 304
L P+++ LP +Y+EKYGK L+ G+LTESQ+HG+ G SLT LL L N++R+++
Sbjct: 186 LIGI-PPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVE 243
Query: 305 RPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSN 358
R HGQ+ V+L EDA K L + D G TGS QIY+TFP S FT+DDV N
Sbjct: 244 REHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVEN 300
Query: 359 YFN---------TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
YF +GPV VRIP Q+KRMFGFV+F +TV++IL+KG HF+CG RVLV
Sbjct: 301 YFKYCLNFIVTRQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLV 360
Query: 410 KPYREKSKL 418
K Y EKS+L
Sbjct: 361 KRYMEKSEL 369
>gi|115474123|ref|NP_001060660.1| Os07g0682400 [Oryza sativa Japonica Group]
gi|122166929|sp|Q0D3J9.1|C3H53_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 53;
Short=OsC3H53
gi|113612196|dbj|BAF22574.1| Os07g0682400 [Oryza sativa Japonica Group]
gi|215767061|dbj|BAG99289.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767076|dbj|BAG99304.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 682
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 197/647 (30%), Positives = 293/647 (45%), Gaps = 124/647 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFN--------------------------PFSSR 91
L L +P S + + F + FS
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 92 PPVS-PAGCRVPSYWDHQVTNKNNSDFVA--LGYSDSINELQSQTQFLSLED-------Q 141
+S AG + D ++ N + G ++ELQ Q Q L + Q
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180
Query: 142 MEHVNLGNT----GFSSDCYYSDAALSNLGARAGRRYQSLNA-------ELPVKTCHYFN 190
M + G G + + +N G RR S++ L K C Y+
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWAN-GGPGHRRSASVSELCLGGADGLGWKPCLYYA 239
Query: 191 KGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHL--FSPGSLEKLELEIIELLKAR 248
+G+CK+GS CR+ HG G DD P ++E+ + + K++
Sbjct: 240 RGYCKNGSACRFVHG----------------GLPDDAAGKMDPSAVEQQCQDFLIRSKSQ 283
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R ++ A+ P Y G + + T+ R + L+
Sbjct: 284 R---LAAAAFP---YSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALM----- 332
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ ++A K++ R ER+D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 333 ----LGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 388
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD---RKY 423
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D +++
Sbjct: 389 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQH 448
Query: 424 Q--ERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------EQA 468
Q ER++ +P +D ++H +R + S + LL + +QA
Sbjct: 449 QPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQA 508
Query: 469 FELERRRLAELQLVR---------KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIG 519
EL RRL LQL+ P+ NP F + + + P + + G
Sbjct: 509 IELHSRRLMGLQLLDFKSRAAAAPTPIGNP--FSASQTAANATGE--SPPDSGELGKGSG 564
Query: 520 VL------NNGSTTGDRVKHVETNYTDQ-ESEGLNLPDSPFANPIAS 559
L NG+ + + TD +S NLPDSPFA+P S
Sbjct: 565 FLLAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLPDSPFASPTKS 611
>gi|357119900|ref|XP_003561671.1| PREDICTED: zinc finger CCCH domain-containing protein 22-like
[Brachypodium distachyon]
Length = 673
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 186/549 (33%), Positives = 262/549 (47%), Gaps = 98/549 (17%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP+ KI+G L++Q E+EMI LA P+ ++Q V+ KA+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDEAAKIMGLLIIQDHGEKEMIRLAFGPESLLQTVMAKARRE 60
Query: 58 L-------------------QQLAMK-SASSPISPSMNSPVNEVSFQFNP-FSSRPPVSP 96
L QQL+ + S +P SPS S + S+ P FS V+P
Sbjct: 61 LGLLSASSSPTSAPRPQSPFQQLSRQNSGRAPPSPSPLSVSSPSSWAQAPVFSRNNGVAP 120
Query: 97 AGCRVPSYWDHQVTNKNNSDFVALGYSDS----INELQSQTQFLSLED----QMEHVN-L 147
V + ++ + N+ A + + +++LQ Q Q L D M H + L
Sbjct: 121 E--DVAGAGEQELMSPGNNGAAASFFPRAGDALVDDLQLQEQLAFLNDGGGATMNHAHQL 178
Query: 148 GNTGFSSDCYYSDAALSN------LGARAG-RRYQSLNA------ELPVKTCHYFNKGFC 194
G T DC + LG G RR S N L K C Y+ +GFC
Sbjct: 179 GGTFDGGDCRSPGPGDGSGMFPYGLGWAPGHRRSASANELFLGDNSLGWKPCLYYARGFC 238
Query: 195 KHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPIS 254
K+GS+CR+ HG + DD + ++ ++ R G+P
Sbjct: 239 KNGSSCRFVHGASLQDV-------------DDAPVAEQQQQQCHDFLLRYKSQRLGHP-- 283
Query: 255 IASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVIL 314
+G G L S S N L+ A+IL
Sbjct: 284 ----------SHGFPYSPTGSLPGSPSSASKCLSFLMQQQHNDNQRYLL----AAAAMIL 329
Query: 315 A--EDAPKYLEN-RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
++A K++ R +R+D ++ GSRQIYLTFPA+STF E+DVS YF YGPV DV
Sbjct: 330 GGGDEAHKFMGRPRLDRTDLASMMNNPGSRQIYLTFPADSTFREEDVSGYFRMYGPVHDV 389
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQERM 427
RIP QQKRMFGFVTF +TV++ILAKGNPHF+C ARVLVKPY+EK K+ D RK Q++
Sbjct: 390 RIPYQQKRMFGFVTFVLPETVRLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQQG 449
Query: 428 ESPMYFSPQYVDMDS---ELHSF-------SRGCETSRFIRKQLLEEQ----EQAFELER 473
+ +P +D + +LH S RKQ ++Q + A EL+
Sbjct: 450 DFSGCTTPNGLDGRADPFDLHQIGARMPQHSNSANEMMMRRKQEEDQQAAEFQHAVELQS 509
Query: 474 RRLAELQLV 482
RRL LQL+
Sbjct: 510 RRLMGLQLL 518
>gi|125558949|gb|EAZ04485.1| hypothetical protein OsI_26636 [Oryza sativa Indica Group]
Length = 432
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 154/249 (61%), Gaps = 33/249 (13%)
Query: 186 CHY-FNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIEL 244
CH+ F +G+CK G NC+++HG V P+ N + SL KL++EI EL
Sbjct: 138 CHFHFFRGYCKKGVNCQFFHGSV------------PELHNPRQVHPFASLSKLDMEIREL 185
Query: 245 LKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLID 304
L P+++ LP +Y+EKYGK L G+LTESQ+HG+ G SLT LL L N++R+++
Sbjct: 186 LIGI-PPPVAVDRLPSMYFEKYGKPLGPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVE 243
Query: 305 RPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSN 358
R HGQ+ V+L EDA K L + D G TGS QIY+TFP S FT+DDV N
Sbjct: 244 REHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVEN 300
Query: 359 YFN---------TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
YF +GPV VRIP Q+KRMFGFV+F +TV++IL+KG HF+CG+RVLV
Sbjct: 301 YFKYCLNFIVTRQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGSRVLV 360
Query: 410 KPYREKSKL 418
K Y EK +L
Sbjct: 361 KRYMEKPEL 369
>gi|224072821|ref|XP_002303898.1| predicted protein [Populus trichocarpa]
gi|222841330|gb|EEE78877.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 202/632 (31%), Positives = 297/632 (46%), Gaps = 137/632 (21%)
Query: 26 IGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAEL--------------QQLAMKSASS 68
+G LL+Q E+EMI LA P+ ++ V+ KA+ EL S
Sbjct: 1 MGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGLSSPTNLSTSPSSPSPLYSSNPI 60
Query: 69 PISPSMNSPVNEVSFQFNP----FSSRPPVSPAGCRVPSYWDHQVTNKNNS--------- 115
IS +S + + F P + S + +P+ D ++ ++S
Sbjct: 61 AISRQNSSSTSRLGFNIPPSLAIPNPSSNNSSSWSDLPNPDDLMISPNDSSLNPASVPFY 120
Query: 116 -DFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYY------------SDAA 162
+ V G SD ++E Q Q Q L D + NLG SSD +Y SD+
Sbjct: 121 ANGVRGGESDLMDEFQLQDQLSFLNDNSQ--NLGPK--SSDLFYPQLDALSSPTGASDSM 176
Query: 163 L--SNLGARAGRRYQSL---------NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESF 211
+ S G RR S+ N+ + C YF +G+CK+GSNCR+ HG + E
Sbjct: 177 MFPSYWGGSVHRRSCSVSDVLGSEDPNSGFGWRPCLYFARGYCKNGSNCRFVHGGLGEL- 235
Query: 212 TQMFGQTSPDGFNDDHLFSPGSLEKLEL--EIIELLKARRGNPISIASLPMLYYEKYGKV 269
DG + SP S K+++ + ELL+++ + +A+ L
Sbjct: 236 ---------DGAG--VVGSPNSNNKIDMMDQCHELLRSKSAHQQRLAAASQLMS------ 278
Query: 270 LQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERS 329
+ + + S+ LL + +N + A+++ ED K+ +R +R+
Sbjct: 279 -------SSAASFPYSPKSMNFLLQQQQNDSQRA----AATALMMGEDMHKFGRSRLDRN 327
Query: 330 DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADT 389
D + SRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +T
Sbjct: 328 D--LVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPET 385
Query: 390 VKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSP--QYVDMDS----E 443
VK+ILAKGNPHFVC ARVLVKPY+EK K+ D+K Q++ FSP +DS +
Sbjct: 386 VKIILAKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQQVERGEFSPCGTPTGLDSRDPFD 445
Query: 444 LHSFSRGC-ETSRFIRKQLLEEQ---EQAFELERRRLAELQL--VRK----------PMP 487
L +R T + ++ LEEQ +QA EL+ RRL LQL V+K P+P
Sbjct: 446 LQLGARMFYNTQDMLWRRKLEEQADLQQALELQSRRLMSLQLLDVKKHHHRALSNGSPVP 505
Query: 488 NPPY----------FGGYMDGLKISEDRL--NFPSAERIDYLIGVLNNGSTTGDRVKHVE 535
+P + F ++ ++ + P+ ++N +T+G E
Sbjct: 506 SPTHSPNIFNHSLAFPPLHSSTEVPQENCSSSMPATSVTAPPEKQISN-ATSGKEYTSSE 564
Query: 536 TNYTDQES---------EGL--NLPDSPFANP 556
N + +ES E L NLPDSPFA+P
Sbjct: 565 ENGSGKESSHGEDSDLQESLEHNLPDSPFASP 596
>gi|414888140|tpg|DAA64154.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 486
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 232/482 (48%), Gaps = 83/482 (17%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKD 60
Query: 58 LQQLAMKSASSPI--------SPSMNSPVNE------------------VSFQFNPFSSR 91
L L +P SP + S N FS
Sbjct: 61 LGLLPSPGPGTPTSVTAAATHSPFLLSRQNSGRCGAGTAPSPLSVSSPSSWAPPPHFSRT 120
Query: 92 PPVSPAGCRVPSYWDHQVT-----NKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVN 146
V G + ++ N S F A G ++ELQ Q Q L D +
Sbjct: 121 NSVVSNGAPAEALAADLMSPAAAGNAPPSPFFAAG-EPLLDELQLQEQLAFLSDAAAGGH 179
Query: 147 LGNTGFSSDC----------YYSDAALSNLGARAGRRYQSLNAELPV--------KTCHY 188
+S+C ++ AL G R S +EL + K C Y
Sbjct: 180 QLPLFDASECRSPGSGDAAGFFPYGALGWANGGPGHRRSSSVSELCLGGADGLGWKPCLY 239
Query: 189 FNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKAR 248
+ +G+CK+GS CR+ HG +++ T + LE+ +I+ K++
Sbjct: 240 YARGYCKNGSACRFVHGGLTDDATAKMDTAT--------------LEQQCQDILLRSKSQ 285
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R +A+ P Y G V + T K L + + R+
Sbjct: 286 R-----LAAFP---YSPTGSVPGSPSAAT------KCLSLLLHQQQQQNENQRVAAAAAA 331
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
++ +DA K++ R +R+D +V GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 332 AALMLGGDDAHKFIGRPRLDRADLASLVNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 391
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 426
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+ +++
Sbjct: 392 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQ 451
Query: 427 ME 428
++
Sbjct: 452 LQ 453
>gi|356540386|ref|XP_003538670.1| PREDICTED: zinc finger CCCH domain-containing protein 55-like
[Glycine max]
Length = 658
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 180/551 (32%), Positives = 250/551 (45%), Gaps = 119/551 (21%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLL--LQEQEMIHLAMSPDVVIQEVVYKAKAEL 58
M E+T +V ++IK DPEN +KI+GYLL L+E E+I LA SPD V+ +V + K L
Sbjct: 1 MGSCEATNVVLSKIKNFDPENASKIMGYLLMNLEESELIRLACSPDPVLHTLVLRVKNHL 60
Query: 59 QQLAMKS----------------------ASSPISPSMNSPVNEVSFQFNP--------- 87
L + S +S+P S P N F N
Sbjct: 61 SGLTLSSTTPSSPSLPPSPLNPTARLTAISSNPFSRG-GGPTNGFDFTRNHPSSPSSHSH 119
Query: 88 ---FSSRPPVSPAGCRVPSY-----WDHQVTNKNNSDFVALGYSDSINE----LQSQTQF 135
F + P+SP + SY +V N + DFV +NE L ++
Sbjct: 120 AWNFPNNNPISPKSTPLFSYDNIRALSPRVVNDDCGDFVD---EQQVNEYFPFLNDSSKN 176
Query: 136 LSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELP---VKTCHYFNKG 192
L D +G + S + S + G A P K C YF +G
Sbjct: 177 EDLVDPRLEFGVGAQNWHSGDSHLQHRRSYSASDVGFGCDEAAAAAPGLGYKPCLYFARG 236
Query: 193 FCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLEL--EIIELLKARRG 250
FCK+G+NC++ HG ++S + G S LE +E E + KA +
Sbjct: 237 FCKNGTNCKFLHGAFTDSLDAIVGSPS------------KQLEGMEQREEFVRFNKAPQL 284
Query: 251 NPISIASLP-MLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQ 309
IAS P EKY + L + ESQR A
Sbjct: 285 Q--RIASGPSAAAREKYFEFL-----IQESQRLAAA------------------------ 313
Query: 310 HAVILAEDAPKYLENRNERSDPGPIVT------GSRQIYLTFPAESTFTEDDVSNYFNTY 363
A I+ E+ + ++ ER+D ++ S+QIYLTFPAESTF ++DVS YF+ +
Sbjct: 314 -AFIMGEEFYNFGWDKPERNDFLAAISSEKSNSASQQIYLTFPAESTFKDEDVSEYFSKF 372
Query: 364 GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKY 423
GPV DVRIP QQKRMFGFVTF +TV++IL+KGNPHF+C +RVLVKPY+EK K+ D++
Sbjct: 373 GPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKRQ 432
Query: 424 Q------ERMESPMYFSPQYVDMDSELHSFSRGCET-----SRFIRKQLLEEQE--QAFE 470
Q ER + SP E + F G +R+++ E+ E Q E
Sbjct: 433 QHQQQQLERGDLSPCLSPSGFG-SKEPYDFHLGARMLYNPHDVLLRRKIEEQAELQQVRE 491
Query: 471 LERRRLAELQL 481
L+ RRL LQL
Sbjct: 492 LQERRLKNLQL 502
>gi|296085121|emb|CBI28616.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 220/460 (47%), Gaps = 99/460 (21%)
Query: 156 CYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMF 215
C SD L++ +G + K C YF +G+CK+G++CR+ HG S S
Sbjct: 132 CSVSDICLASDDPASGFGW---------KPCLYFARGYCKNGTSCRFLHGGDSASVVGSE 182
Query: 216 GQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGY 275
G + SP +E +E + ELL+++ +A+
Sbjct: 183 GAA--------MVGSPSKIEMME-QCHELLRSKSAQQQRLAA------------------ 215
Query: 276 LTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSD----- 330
SQ A + + + D A+++ +D K+ +R ER +
Sbjct: 216 --ASQIMASASFPYSAKCMNFLLQQQQTDSQRAAAALMMGDDMHKFGRSRLERGEFMNGG 273
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTV 390
G + GSRQIYLTFPA+STF E+DVSNYF+ +GPV DVRIP QQKRMFGFVTF +TV
Sbjct: 274 AGMVNPGSRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYPETV 333
Query: 391 KMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ------ERMESPMYFSPQYVDMDSEL 444
K+ILAKGNPHFVC ARVLVKPY+EK K+ D+K Q ER E +P +D +
Sbjct: 334 KLILAKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQQQQVERGEFSACSTPTGLD-SRDP 392
Query: 445 HSFSRGCE----TSRFIRKQLLEEQ---EQAFELERRRLAELQL--VRK----------- 484
+ G T + ++ LEEQ +QA EL+ RRL LQL V+K
Sbjct: 393 YDLQLGARMFYNTQDMLWRRKLEEQADLQQAIELQGRRLMGLQLLDVKKQQHHRALSTGA 452
Query: 485 PMPNPPYFGGYMDG-LKISEDR------------------LNFPSAERIDYLI------- 518
P+P+P + + + L + DR +N +AE+ +
Sbjct: 453 PIPSPTHSPSFFNQPLILPSDRSSPEAPEENCSSPATAIPVNAVAAEQQQQTVTTAAEKE 512
Query: 519 --GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANP 556
G+ NG+ TG H E + + E NLPDSPFA+P
Sbjct: 513 FTGIDENGNGTGKESSHNEDSDLPESLEH-NLPDSPFASP 551
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIVF+RI+ LDPEN +KI+G LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKE 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|255544930|ref|XP_002513526.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223547434|gb|EEF48929.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 686
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 171/570 (30%), Positives = 263/570 (46%), Gaps = 133/570 (23%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T I+ ++IK +DPEN +KI+GY+L+Q E +++ LA + ++ V+ KAK
Sbjct: 1 MDTYEATNILMSKIKSIDPENASKIMGYILIQDLNENDLLSLAFGSETLLHNVIIKAKTH 60
Query: 58 L--QQLAMKSASSPI------------------------------------SPS------ 73
L + + SSP+ SPS
Sbjct: 61 LGLSTNTLTTPSSPLPSPLNPISRPANNHSPFSTQSSSSPRVGTPFVDFAKSPSPHSWPA 120
Query: 74 -----MNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDFVALGYSDSINE 128
N+ + +S + +PF S + VP N S V+ +D +NE
Sbjct: 121 SGLANNNNGITSISPKSSPFLSYDNIRSGSALVPPSA--TANGGNGSGDVSRNSTDLLNE 178
Query: 129 LQSQTQFLSLED-QMEHVNLGN-----TGFSSDCY----------YSDAALSNLGARAGR 172
Q F L+D + + G+ GFS + SDA G
Sbjct: 179 YQLDEYFSFLDDLPSKGEDFGDPRAQLGGFSMNNVDNHIHRRRFSESDACFGTEDGGFGI 238
Query: 173 RYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPG 232
Y + C YF +GFCK+G NC++ HG GF G
Sbjct: 239 GY---------RPCLYFARGFCKNGENCKFVHG----------------GF--------G 265
Query: 233 SLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYS--LT 290
+ E + S + LY ++ +++ + +Q+ + Y+ +
Sbjct: 266 AGENIGDVSGGGGGGGGLLVGSPREMEGLYLQQQEDMMR----MKAAQQQQRLAYNKYMN 321
Query: 291 KLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIV------TGSRQIYLT 344
LL + +S R+ G +V++ ++ K + R ER+D + + SRQIYLT
Sbjct: 322 FLLQQESDSQRI-----GPASVMMGDEFHKIGQFRPERNDFLAMAMEEKANSASRQIYLT 376
Query: 345 FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
FPA+STF ++DVSNYF+ +GPV DVRIP QQKRMFGFVTF +DTVK+IL++GNPHF+C
Sbjct: 377 FPADSTFKDEDVSNYFSHFGPVQDVRIPYQQKRMFGFVTFVHSDTVKLILSRGNPHFICD 436
Query: 405 ARVLVKPYREKSKLVDRKYQERMESPM-------YFSPQYVDMDS--ELHSFSRGCETSR 455
+RVLVKPY+EK K+ +++ Q+ + M SP +D +LH +R S+
Sbjct: 437 SRVLVKPYKEKGKVTNKRQQQLQQQLMDRGNFSPCSSPSGLDPRELYDLHLGARMLYNSQ 496
Query: 456 --FIRKQLLEEQE--QAFELERRRLAELQL 481
+R++L ++ E QA EL+ RRL LQL
Sbjct: 497 EMMLRRKLEQQAELQQAIELQGRRLINLQL 526
>gi|357481341|ref|XP_003610956.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355512291|gb|AES93914.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
Length = 685
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 166/548 (30%), Positives = 248/548 (45%), Gaps = 99/548 (18%)
Query: 5 ESTRIVFNRIKKLDPENVTKIIGYLL--LQEQEMIHLAMSPDVVIQEVVYKAKAEL-QQL 61
E+T +V ++K DPEN +KI+G+LL L+E E++ LA PD V+ + + K L L
Sbjct: 5 EATNVVLAKVKNFDPENASKIMGFLLMNLEEYELVRLACCPDHVLHNLAIRVKTHLGMNL 64
Query: 62 AMKSASSPISP------------SMNSPVNEVSFQFNPFSSRP-------------PVSP 96
+ S+ SP++P S +SP F FN S P P+SP
Sbjct: 65 STPSSPSPLNPIGRITSSSNNPFSKSSPRGSNGFDFNRNPSSPSGNVWSQPSFPKNPISP 124
Query: 97 AGCRVPSYWDHQVTNKNN--------------SDFVALGYSDSINELQSQTQFLSLEDQM 142
+ SY + Q S V G D ++E Q F L +
Sbjct: 125 KFNPLMSYENIQGGVGVVGGGGGSGAGGSCAFSPRVNNGDYDFVDEQQLNECFPFLNESS 184
Query: 143 EHVNLGNTGFSSDCYYSDAALSNLGARAG---RRYQSLNAELPV---------KTCHYFN 190
+L + + N G R + + +A V K C YF
Sbjct: 185 NGDDLVDPRLEMGVGGQNWISGNNGDAHNIHKRSFSANDASFSVEESGLGFGFKPCLYFA 244
Query: 191 KGFCKHGSNCRYYHG-LVSESFTQMFGQTSPDGFNDDHLFS--PGSLEKLELEIIELLKA 247
+GFCK+GSNC++ HG + + + G +G F + + + L A
Sbjct: 245 RGFCKNGSNCKFVHGDSIDANSGAVVGSPKFEGLEQHEEFMRFKAAQQHQRMVAASQLAA 304
Query: 248 RRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPH 307
+P+S Y+KY +L + + + +A + + ++ RP
Sbjct: 305 GGTSPVS--------YDKYIDLL-----MQQHSDNQRAVAAAAFAMGEEYFNITGRGRPE 351
Query: 308 -GQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ +++ D P + SRQIYLTFPAESTF ++DVS YF+ +GPV
Sbjct: 352 RNEFLAMVSGDKPN---------------SASRQIYLTFPAESTFKDEDVSEYFSKFGPV 396
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ-- 424
DVRIP QQKRMFGFVTF +TV++IL+KGNPHF+C +RVLVKPY+EK K+ D+++Q
Sbjct: 397 QDVRIPYQQKRMFGFVTFVFPETVRVILSKGNPHFICDSRVLVKPYKEKGKVPDKRHQHQ 456
Query: 425 ----ERMESPMYFSPQYVDMDS--ELHSFSRGCETSR-FIRKQLLEEQ----EQAFELER 473
ER + SP D + H +R + ++ +EEQ +Q EL+
Sbjct: 457 QQQFERGDFSPCLSPSAFDSKEPFDFHPGTRMLYNPHDILLRRKIEEQAADFQQVLELQE 516
Query: 474 RRLAELQL 481
RRL LQL
Sbjct: 517 RRLKSLQL 524
>gi|224114163|ref|XP_002332416.1| predicted protein [Populus trichocarpa]
gi|222832369|gb|EEE70846.1| predicted protein [Populus trichocarpa]
Length = 598
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 176/338 (52%), Gaps = 56/338 (16%)
Query: 121 GYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDA-ALSN-------------L 166
G SD ++E Q Q Q L D NLG SSD +YS ALS+
Sbjct: 153 GESDLMDEFQLQDQLSFLND--NSANLGPK--SSDLFYSQLDALSSPTGASDSVMFPSYW 208
Query: 167 GARAGRRYQSL---------NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQ 217
G RR S+ N+ + C YF +G+CK+GSNCR+ HG + ES
Sbjct: 209 GGSVHRRSCSVSDVLGSEDPNSGFGWRPCLYFARGYCKNGSNCRFVHGGLGESDGAGVVV 268
Query: 218 TSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLT 277
SP+G N + + ELL+++ +A+ L GG
Sbjct: 269 GSPNGNNKIDMMD---------QCHELLRSKSAQQQRLAAASQLM----------GGSAA 309
Query: 278 ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTG 337
K S+ LL + +N D A+++ ED K+ +R +R+D I
Sbjct: 310 SFPYSPK---SMNFLLQQQQN-----DSQRAAAALMMGEDMHKFARSRLDRNDL--INPA 359
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
SRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKG
Sbjct: 360 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFLYPETVKIILAKG 419
Query: 398 NPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSP 435
NPHFVC ARVLVKPY+EK K+ D+K Q++ FSP
Sbjct: 420 NPHFVCDARVLVKPYKEKGKVPDKKQQQQQVERGEFSP 457
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIVF+RI+ LDPEN +KI+G LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKE 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|255544928|ref|XP_002513525.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223547433|gb|EEF48928.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 700
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 171/323 (52%), Gaps = 50/323 (15%)
Query: 178 NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKL 237
N+ L K C YF +GFCK+G++CR+ HG S + G SP L +
Sbjct: 233 NSGLGWKPCLYFARGFCKNGTSCRFLHGGESGDGATLVG-------------SPSKLSEF 279
Query: 238 ELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLK 297
E + ELL+++ + A + K + L
Sbjct: 280 E-QCQELLRSKAAAAQQQKLAAASQFMT------------------GASFPYNKCMNLLL 320
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQIYLTFPAESTF 351
R A+++ E+ K+ R ER+D G + GSRQIYLTFPA+STF
Sbjct: 321 QQQNDTQRSAAAAALMMGEELHKFGRCRPERNDFSAMGLGGAMNPGSRQIYLTFPADSTF 380
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411
E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC +RVLVKP
Sbjct: 381 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 440
Query: 412 YREKSKLVDRK---YQERMESPMY---FSPQYVDMDS--ELHSFSRGCE-TSRFIRKQLL 462
Y+EK K+ D+K Q++ME Y SP +D +LH +R + T + ++ L
Sbjct: 441 YKEKGKVPDKKQPHQQQQMERGDYSACSSPSGLDSREPFDLHLGARMFQNTQEMLLRRKL 500
Query: 463 EEQ---EQAFELERRRLAELQLV 482
EEQ +QA EL+ RRL LQL+
Sbjct: 501 EEQAELQQAIELQGRRLMNLQLL 523
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDPEN +KI+G LLLQ ++EMI LA P+ ++ ++ +AK
Sbjct: 1 MDSYEATKMVFSRIQSLDPENASKIMGCLLLQDHGDKEMIRLAFGPETLLHNLILQAKTH 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|449451727|ref|XP_004143613.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Cucumis sativus]
Length = 733
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/433 (35%), Positives = 207/433 (47%), Gaps = 90/433 (20%)
Query: 106 DHQVTNKN----NSDFVALGY--SDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYS 159
DH ++ N +S F A G SD I+E Q Q Q L D + + N +D ++
Sbjct: 135 DHLISPGNLPLGSSCFAAGGAPASDMIDEFQLQDQLSFLNDGSPTIGVKN----ADLFFP 190
Query: 160 DAALSNL----------------GARAGRR----------YQSLNAELPVKTCHYFNKGF 193
A LS+ G RR + LN L K C YF +GF
Sbjct: 191 PADLSSSPTGGGFGSYGGDATWGGGPVHRRSCSVNDACLGTEDLNCGLGWKPCLYFARGF 250
Query: 194 CKHGSNCRYYHGLVSESFTQMFGQTSPDGFN-----DDHLFSPGSLEKLELEIIELLKAR 248
CK+G++CR+ HG + +S SP + + L S S ++ +L+ +
Sbjct: 251 CKNGTSCRFLHGGLGDSDVSAAAVGSPSKIDVMEQCHELLRSKSSAQQRLAAASQLMASA 310
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
P S S+ L ++ +SQR A + L
Sbjct: 311 NSFPYSPKSINFLLQQQQ----------NDSQRAAAAAAAAAAAL--------------- 345
Query: 309 QHAVILAEDAPKYLEN----RNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
++ ED K+ + RNE S G I SRQIYLTFPA+STF E+DVSNYF+
Sbjct: 346 ----MMGEDLHKFSRSSRLERNEFSLNGSAGIINPASRQIYLTFPADSTFKEEDVSNYFS 401
Query: 362 TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC ARVLVKPY+EK K+ D
Sbjct: 402 MYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPD- 460
Query: 422 KYQERMESPMYFSP--QYVDMDS-----ELHSFSRGCETSR--FIRKQLLEEQE---QAF 469
KY+++ + FSP +DS L SR S + ++ LEEQ+ Q
Sbjct: 461 KYRKQQQIDRDFSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQADLQTL 520
Query: 470 ELERRRLAELQLV 482
+L+ RRL LQL+
Sbjct: 521 DLQSRRLLNLQLL 533
>gi|297811379|ref|XP_002873573.1| hypothetical protein ARALYDRAFT_325766 [Arabidopsis lyrata subsp.
lyrata]
gi|297319410|gb|EFH49832.1| hypothetical protein ARALYDRAFT_325766 [Arabidopsis lyrata subsp.
lyrata]
Length = 651
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 253/545 (46%), Gaps = 98/545 (17%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD ++T ++ +I+ L+P+ KIIGYLLLQ+ ++++HLA P+ ++Q ++ K K+
Sbjct: 1 MDSGDATALLLTKIRSLEPDYAPKIIGYLLLQDFGDRDLMHLARGPESILQSIISKVKSH 60
Query: 58 L------QQLAMKSASSPISPSMNSPVN---------------------------EVSFQ 84
L + ++ SP++P P+N ++
Sbjct: 61 LGIFSNNSPSSTPTSPSPLNPICRPPINGRGSSHSNGFMDFRRNSPSSPSSTSPWSLNNS 120
Query: 85 FNPFS-SRPPVSPAGCRVP----SYWDHQVTNKNNSDFVALGYSDSINELQSQTQFLSLE 139
NP + + P +SP +P S+ + V+ ++ A G +D +++ Q L+
Sbjct: 121 MNPINGNNPHISPKHTPIPKPFSSHQSNGVSATDSGSADAGGNADLLDDQQLNDYLSFLD 180
Query: 140 DQMEHV-NLGNTGFSSDCYYSDAALS----NLGARAGRRYQSLNAELPVKTCHYFNKGFC 194
D +L + D D + A A K C YF++G C
Sbjct: 181 DSCSKTEDLVDPRIPLDYSVDDGETHLHRRSFSADASFGSGDDGFGSGCKPCVYFSRGLC 240
Query: 195 KHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKAR------ 248
K+G +C++ HG E+ +G D SP +E + E+++ +
Sbjct: 241 KNGESCKFIHGGYPENM-------DCNGIVAD---SPRKMENFVRQHEEMMRLKLAYQQQ 290
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R + P+L YEK L +QR G + + + + ++
Sbjct: 291 RLASQILGRAPLLPYEKRMDFL----LQQHAQRDGGLPFGDERFWSSSPGRLERMEL--- 343
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
A+ L + + SRQIYLTFPA+STF ++DV+ YF+ +G V D
Sbjct: 344 -MAMQLGDQSNSV----------------SRQIYLTFPADSTFKDEDVATYFSLFGTVQD 386
Query: 369 VRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ---- 424
VRIP QQKRMFGFV+FA +TVK++LA+GNPHF+C +RVLVKPY+EK K++D+K Q
Sbjct: 387 VRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQ 446
Query: 425 ---ERMESPMYFSPQYVD--MDSELHSF-SRGCETSRFIRKQLLEEQE--QAFELERRRL 476
ER SP VD S+ H S+ R + ++ +E+ + +A ELERRR
Sbjct: 447 QQIERGNYSPCSSPSGVDPREQSDFHLVGSKMLYERREMMRRKMEQADLLRAIELERRRF 506
Query: 477 AELQL 481
LQL
Sbjct: 507 INLQL 511
>gi|79313317|ref|NP_001030738.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332642940|gb|AEE76461.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 602
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 175/528 (33%), Positives = 256/528 (48%), Gaps = 104/528 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F +I+ L+P+ +KIIGYLLLQ+ +++ LA+ P+ ++Q V KAK+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 58 L--QQLAMKSASSPISPSMNSPVN------EVSFQFNPFSSRPPVSPAGCRVPSYWDH-- 107
L SASSP++P ++ P+N S N FS R P+SP+ S +
Sbjct: 61 LGLSSNGSSSASSPLNP-ISRPINIHRHSLSHSSPGNGFS-RNPLSPSFATPGSLGSNPN 118
Query: 108 -------QVTNKNNSDFVALGYSDSINELQSQTQ---FLSLEDQMEHVN----LGNTGFS 153
++ SD A G S + + Q +LS ++ N L GFS
Sbjct: 119 MISSPFQASSSLFASDGAAAGDSTGNGDFLDEQQLGNYLSFLNESSSKNNDESLDPFGFS 178
Query: 154 SDCYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQ 213
+D DA L R + + +A + GF G N R+ HG + + F
Sbjct: 179 ADN--GDAHLHK------RSFSASDACFGSE-----EPGFGGGGYN-RFLHGGLGDDFD- 223
Query: 214 MFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARR-----GNPISIASLPMLYYEKYGK 268
SP GF SP + + + EI+ + A+R ++ PM Y +
Sbjct: 224 -----SPGGFG-----SPDYVSRQQEEIVRMKMAQRQRMAAAQYLAATGSPMSYEKGLNF 273
Query: 269 VL-QAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNE 327
+L Q + + + + G+ GY P G+H R+E
Sbjct: 274 LLHQRNAHRSGAGQFGEEGY--------------WFGSP-GRH-------------ERDE 305
Query: 328 RSDPGPIV-TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFAS 386
G + S+QIYLTFPA+S+FT++DVSNYF +GPV DVRIP QQKRMFGFVTF
Sbjct: 306 FMGMGDKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLH 365
Query: 387 ADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ-------ERMESPMYFSPQYVD 439
++TV++ILA+GNPHF+C +RVLVKPY+EK ++++++ Q ER SP +D
Sbjct: 366 SETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMD 425
Query: 440 ----MDSEL--HSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQL 481
DS L FS E R RK + +QA E +RRR LQL
Sbjct: 426 SRDLFDSHLAPRMFSNTQEMMR--RKAEQADLQQAIEFQRRRFLSLQL 471
>gi|11994270|dbj|BAB01453.1| unnamed protein product [Arabidopsis thaliana]
Length = 591
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 174/528 (32%), Positives = 255/528 (48%), Gaps = 104/528 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F +I+ L+P+ +KIIGYLLLQ+ +++ LA+ P+ ++Q V KAK+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 58 L--QQLAMKSASSPISPSMNSPVN------EVSFQFNPFSSRPPVSPAGCRVPSYWDH-- 107
L SASSP++P ++ P+N S N FS R P+SP+ S +
Sbjct: 61 LGLSSNGSSSASSPLNP-ISRPINIHRHSLSHSSPGNGFS-RNPLSPSFATPGSLGSNPN 118
Query: 108 -------QVTNKNNSDFVALGYSDSINELQSQTQ---FLSLEDQMEHVN----LGNTGFS 153
++ SD A G S + + Q +LS ++ N L GFS
Sbjct: 119 MISSPFQASSSLFASDGAAAGDSTGNGDFLDEQQLGNYLSFLNESSSKNNDESLDPFGFS 178
Query: 154 SDCYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQ 213
+D DA L R + + +A + GF G N R+ HG + + F
Sbjct: 179 ADN--GDAHLHK------RSFSASDACFGSE-----EPGFGGGGYN-RFLHGGLGDDFD- 223
Query: 214 MFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARR-----GNPISIASLPMLYYEKYGK 268
SP GF SP + + + EI+ + A+R ++ PM Y +
Sbjct: 224 -----SPGGFG-----SPDYVSRQQEEIVRMKMAQRQRMAAAQYLAATGSPMSYEKGLNF 273
Query: 269 VL-QAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNE 327
+L Q + + + + G+ GY P G+H R+E
Sbjct: 274 LLHQRNAHRSGAGQFGEEGY--------------WFGSP-GRH-------------ERDE 305
Query: 328 RSDPGPIV-TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFAS 386
G + S+QIYLTFPA+S+FT++DVSNYF +GPV DVRIP QQKRMFGFVTF
Sbjct: 306 FMGMGDKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLH 365
Query: 387 ADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRK-------YQERMESPMYFSPQYVD 439
++TV++ILA+GNPHF+C +RVLVKPY+EK ++++++ ER SP +D
Sbjct: 366 SETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMD 425
Query: 440 ----MDSEL--HSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQL 481
DS L FS E R RK + +QA E +RRR LQL
Sbjct: 426 SRDLFDSHLAPRMFSNTQEMMR--RKAEQADLQQAIEFQRRRFLSLQL 471
>gi|297830802|ref|XP_002883283.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329123|gb|EFH59542.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 607
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 177/537 (32%), Positives = 259/537 (48%), Gaps = 118/537 (21%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F +I+ L+P+ +KIIGYLLLQ+ ++++ LA+ PD ++Q V KAK+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGTRDLMRLALGPDTLLQSVCLKAKSA 60
Query: 58 L--QQLAMKSASSPISP------------SMNSPVNEVSFQFNPFSSRPPVSPAGCRVPS 103
L SASSP++P S +SP N F FS P+SP+ S
Sbjct: 61 LGLSSNGSSSASSPLNPISRPINIHRHSLSQSSPGN----GFMEFSRNNPLSPSLTTPGS 116
Query: 104 YWDHQVTNKNNSDFVA---------------LGYSDSINELQSQTQFLSLEDQMEHVN-- 146
+ N +S F A G D ++E Q +LS ++ N
Sbjct: 117 LGSN--PNMISSPFQASSSLFASDGGAAGDSTGNGDFLDE-QQLGNYLSFLNESSSKNND 173
Query: 147 --LGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYH 204
L GFS+D DA L R + + +A + GF G N R+ H
Sbjct: 174 ESLDPFGFSADN--GDAHLHK------RSFSASDACFGSE-----EPGFGGGGYN-RFPH 219
Query: 205 GLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARR-----GNPISIASLP 259
G + + F SP GF SP + + + E++ + A+R ++ P
Sbjct: 220 GGLGDDFD------SPGGFG-----SPDYVSRQQEEMVRMKMAQRQRMAAAQYLAATGSP 268
Query: 260 MLYYEKYGKVL-QAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA 318
M Y + +L Q + + + ++G+ GY P G+H
Sbjct: 269 MSYEKGLNFLLHQRNVHRSGAGQYGEEGY--------------WFGSP-GRH-------- 305
Query: 319 PKYLENRNERSDPGPIV-TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKR 377
R+E G + S+QIYLTFPA+S+FT++DVSNYF T+GPV DVRIP QQKR
Sbjct: 306 -----ERDEFMGMGDKSNSASKQIYLTFPADSSFTDEDVSNYFGTFGPVQDVRIPYQQKR 360
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM---YFS 434
MFGFVTF ++TV++ILA+GNPHF+C +RVLVKPY+EK ++++++ Q+++ M FS
Sbjct: 361 MFGFVTFVHSETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFS 420
Query: 435 PQY--VDMDSE--------LHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQL 481
P MDS FS E R RK + +QA E +RRR LQL
Sbjct: 421 PGSSPSGMDSRDLFESLLSPRMFSNTQEMMR--RKAEQADLQQAIEFQRRRFLNLQL 475
>gi|224104191|ref|XP_002313352.1| predicted protein [Populus trichocarpa]
gi|222849760|gb|EEE87307.1| predicted protein [Populus trichocarpa]
Length = 685
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 168/314 (53%), Gaps = 49/314 (15%)
Query: 178 NAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKL 237
N+ K C YF++GFCK+G+ CR+ HG ++S + G SP L +
Sbjct: 220 NSGFGWKPCLYFSRGFCKNGTGCRFVHGDSADS-AAIVG-------------SPSELNEF 265
Query: 238 ELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLK 297
E + E+L+++ + K+ A ++ G K + L
Sbjct: 266 E-QCQEILRSKAA-------------AQQRKLAAASQFMA-----GATFLPQNKCMNFLH 306
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQIYLTFPAESTF 351
R A+++ ++ K+ R ERSD G + +RQIYLTFPA+STF
Sbjct: 307 QQQNESQRSAAAAALMMGDEIHKFGRIRPERSDFSQMGLGGAMSPSARQIYLTFPADSTF 366
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411
E+DVS+YF+ YGPV DVRIP QQKRMFGFVTF A+TVK+ILAKGNPHFVC +RVLVKP
Sbjct: 367 REEDVSSYFSFYGPVQDVRIPYQQKRMFGFVTFVFAETVKLILAKGNPHFVCDSRVLVKP 426
Query: 412 YREKSKLVDRKYQ-----ERMESPMYFSPQYVDMDS--ELHSFSRGC-ETSRFIRKQLLE 463
Y+EK K+ D+K+Q ER E SP ++ +LH R T +R++L E
Sbjct: 427 YKEKGKVPDKKHQQQQQIEREEYSACPSPSRINCREPFDLHLGGRMFYNTQEMLRRKLEE 486
Query: 464 EQ--EQAFELERRR 475
E +QA EL+ RR
Sbjct: 487 EADLQQAIELQERR 500
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 18/107 (16%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T IVF+RI+ L+PEN +KI+GYLLLQ E+EMI LA P+ ++Q ++ + K
Sbjct: 1 MDSYEATNIVFSRIQSLEPENASKIMGYLLLQDYGEKEMIRLAFGPETLLQNLILQTKT- 59
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRP-PVSPAGCRVPS 103
QL S +PS SP F P SSRP P+ + R+P+
Sbjct: 60 --QLGFPSN----TPSTPSPA------FIP-SSRPSPLYISSSRIPN 93
>gi|297847524|ref|XP_002891643.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297337485|gb|EFH67902.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 413
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 207/445 (46%), Gaps = 109/445 (24%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQE---MIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F++I+ L+PEN +K+IGY LLQ+ E +I +A PD +IQ KAK++
Sbjct: 1 MDPGDPTSIIFSKIRTLEPENASKVIGYFLLQDMEQRDLIRIAFGPDSLIQTFCRKAKSD 60
Query: 58 LQQLAMKSASSPI-----SPSMNSPVN---EVSFQFNPFSSRPPVSPAGCRVPSYWDHQV 109
L L+ S PI S S +SP N E+S R P +P S
Sbjct: 61 LG-LSSNGFSRPINIHGQSLSQSSPRNGFLELS--------RNPSNPLSPSFTSNTLRDN 111
Query: 110 TNKNNSDF-------VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAA 162
N N+S F + D + Q FL +D+ N FS++ DA
Sbjct: 112 PNFNSSPFRESSSLFASSSGGDEQQQQQFSNNFLFTKDEDPFANFHKRSFSAN----DAC 167
Query: 163 LSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDG 222
L +E P GF R+ G + + F G SP
Sbjct: 168 L--------------ESEEP---------GFGGGTGYHRFPQGGLVDDFGSSAGLGSPSE 204
Query: 223 FNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRH 282
D++ E + +++ + + ++ S PML+ + G + GGY RH
Sbjct: 205 M--DYMLE----EMMRMKLAQQKRMVAAQFMAACSSPMLHRQGSGHFGEEGGYYFSPGRH 258
Query: 283 GKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIY 342
ER D + S+QIY
Sbjct: 259 --------------------------------------------ERED-----SVSKQIY 269
Query: 343 LTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV 402
LTFP+ES+FT++DVS YF+ +GPV+DVRIP QQ+RMFGFVTFA A+TV+ ILA+GNPHF+
Sbjct: 270 LTFPSESSFTDEDVSTYFSDFGPVEDVRIPYQQQRMFGFVTFAKAETVRTILARGNPHFI 329
Query: 403 CGARVLVKPYREKSKLVDRKYQERM 427
C +RVLVKPY+EK K++ ++ Q+++
Sbjct: 330 CDSRVLVKPYKEKGKILQKRQQQQL 354
>gi|326526009|dbj|BAJ93181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 697
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 204/429 (47%), Gaps = 83/429 (19%)
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELE 240
L K C Y+ +G+CK+GS CR+ HG GF DD + +E +
Sbjct: 233 LGWKPCLYYARGYCKNGSACRFVHG----------------GFPDDLAGAKMDQAAVEQQ 276
Query: 241 IIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSV 300
+ L R +A+ Y G + + S L + + +
Sbjct: 277 CQDFL--LRSKSQRLAAAAGFAYSPTGSLPG-----SPSAASKCLSLLLQQQQQQQNDGQ 329
Query: 301 RLIDRPHGQHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSN 358
R ++ ++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSN
Sbjct: 330 RAAAAAAAAALMLGGDEAHKFMNRPRLDRGDFASMMNPGSRQIYLTFPADSTFREEDVSN 389
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 390 YFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKV 449
Query: 419 VD--RKYQ-ERMESPMYFSPQYVDMDS--ELHSF-SRGCETSR-----FIRKQLLEEQ-- 465
D RK Q ER++ SP +D +LH +R + S +R++L E+Q
Sbjct: 450 PDKFRKQQGERVDFSSCGSPTGLDARDPFDLHQIGARMLQHSNSANEMLLRRKLEEQQQA 509
Query: 466 ---EQAFELERRRLAELQL-------------------VRKPMP------------NPPY 491
+QA EL+ RRL LQ+ + KP +PP
Sbjct: 510 VELQQAIELQSRRLMGLQMLDLKTRSAAAAAAATAPTPIGKPFSPTHTTATTPTFESPPD 569
Query: 492 FGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQESEGLNLPDS 551
G G FP ++ + T+GD T+ +DQ +E NLPDS
Sbjct: 570 SGEQGTGCGFL-----FPHKNAVN----GADKDETSGDSTTSPNTD-SDQSAE-HNLPDS 618
Query: 552 PFANPIASG 560
PFA+P SG
Sbjct: 619 PFASPTKSG 627
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 10/91 (10%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF RI+ LDP++ KI+G LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFARIQGLDPDHAAKIMGLLLIQDHGEKEMIRLAFGPEALLLAVMAKARKD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPF 88
L L P S +P + + +PF
Sbjct: 61 LGLL-------PASSGPGTPTSAAATGHSPF 84
>gi|147770113|emb|CAN69883.1| hypothetical protein VITISV_031889 [Vitis vinifera]
Length = 682
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 167/312 (53%), Gaps = 61/312 (19%)
Query: 304 DRPHGQHAVILAEDAPKYLENRNERSD-----PGPIVTGSRQIYLTFPAESTFTEDDVSN 358
D A+++ +D K+ +R ER + G + GSRQIYLTFPA+STF E+DVSN
Sbjct: 320 DSQRAAAALMMGDDMHKFGRSRLERGEFMNGGAGMVNPGSRQIYLTFPADSTFREEDVSN 379
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ +GPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC ARVLVKPY+EK K+
Sbjct: 380 YFSIFGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKV 439
Query: 419 VDRKYQ------ERMESPMYFSPQYVDMDSELHSFSRGCE----TSRFIRKQLLEEQ--- 465
D+K Q ER E +P +D + + G T + ++ LEEQ
Sbjct: 440 PDKKQQQQQQQVERGEFSACSTPTGLD-SRDPYDLQLGARMFYNTQDMLWRRKLEEQADL 498
Query: 466 EQAFELERRRLAELQL--VRK-----------PMPNPPYFGGYMDG-LKISEDR------ 505
+QA EL+ RRL LQL V+K P+P+P + + + L + DR
Sbjct: 499 QQAIELQGRRLMGLQLLDVKKQQHHRALSTGAPIPSPTHSPSFFNQPLILPSDRSSPEAP 558
Query: 506 ------------LNFPSAERIDYLI---------GVLNNGSTTGDRVKHVETNYTDQESE 544
+N +AE+ + G+ NG+ TG H E + + E
Sbjct: 559 EENCSSPATAIPVNAVAAEQQQQTVTTAAEKEFTGIDENGNGTGKESSHNEDSDLPESLE 618
Query: 545 GLNLPDSPFANP 556
NLPDSPFA+P
Sbjct: 619 H-NLPDSPFASP 629
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIVF+RI+ LDPEN +KI+G LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKE 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|357121462|ref|XP_003562439.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Brachypodium distachyon]
Length = 699
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 232/496 (46%), Gaps = 104/496 (20%)
Query: 128 ELQSQTQFLSLED-QMEHVNLGNTGFSSDCYY--SDAALSNLGA---RAGRRYQSLNA-- 179
LQ Q FL D Q + + L + G S+C DA + GA RR S++
Sbjct: 176 HLQDQLAFLGGGDRQQQQLPLFDGG-GSECRSPGGDAGVFPYGAGWAHGHRRSASVSELC 234
Query: 180 --------ELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSP 231
L K C Y+ +G+CK+GS CR+ HG GF+DD +
Sbjct: 235 FGGGGGGDALGWKPCMYYARGYCKNGSACRFVHGG--------------GGFSDDLAGAK 280
Query: 232 GSLEKLELEIIELL---KARR---GNPIS----IASLPMLYYEKYGKVLQAGGYLTESQR 281
+E + + L K++R G P S + P + +LQ ESQR
Sbjct: 281 MDQAAVEQQCHDFLLRSKSQRLAGGFPYSPTGSLPGSPSAASKCLSLLLQQHQQQNESQR 340
Query: 282 HGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYL-ENRNERSDPGPIVT-GSR 339
A + L+ + ++A K++ R +R D ++ GSR
Sbjct: 341 AAAAAAAAAALM-------------------LGGDEAHKFMGRARLDRGDFASMMNPGSR 381
Query: 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNP 399
QIYLTFPA+STF E+DVS YFN YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNP
Sbjct: 382 QIYLTFPADSTFREEDVSTYFNIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNP 441
Query: 400 HFVCGARVLVKPYREKSKLVD--RKYQ-ERMESPMYFSPQYVDMDS--ELHSF-SRGCET 453
HF+C ARVLVKPY+EK K+ D RK Q ERM+ SP +D +LH SR +
Sbjct: 442 HFICDARVLVKPYKEKGKVPDKFRKQQGERMDFASCTSPTGLDARDPFDLHPLGSRMLQH 501
Query: 454 SRFIRKQLLEEQEQA----------FELERRRLAELQLV-----RKPMPNP---PYFGGY 495
S + LL + + EL+ RRL LQL+ +P P P+ +
Sbjct: 502 SNSANEMLLRRKLEEQQQAAELQQAIELQSRRLMGLQLLDLKSRSAALPTPIGNPFSPSH 561
Query: 496 MDGLKI-------SEDRLN-----FPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQES 543
G S ++ N FP + ++ + + GD T+ +DQ +
Sbjct: 562 TTGATPTVESPPDSGEQGNGCGFLFPHKKAVN----GADKDESAGDSTTSPHTD-SDQSA 616
Query: 544 EGLNLPDSPFANPIAS 559
E NLPDSPFA+P S
Sbjct: 617 E-HNLPDSPFASPTKS 631
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF RI+ LDP++ KI+GYLL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATKVVFARIQGLDPDHAAKIMGYLLIQDHGEKEMIRLAFGPEALLHSVMAKARTE 60
Query: 58 LQQLAMKSASSPIS 71
L L P S
Sbjct: 61 LGLLGHHHHHLPSS 74
>gi|242051314|ref|XP_002463401.1| hypothetical protein SORBIDRAFT_02g043180 [Sorghum bicolor]
gi|241926778|gb|EER99922.1| hypothetical protein SORBIDRAFT_02g043180 [Sorghum bicolor]
Length = 702
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 201/415 (48%), Gaps = 71/415 (17%)
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELE 240
L K C Y+ +G+CK+GS CR+ HG + + T + G +LE+ +
Sbjct: 240 LGWKPCLYYARGYCKNGSACRFVHGGLPDDATALAGAK----------MDTATLEQQCQD 289
Query: 241 IIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSV 300
I+ K++R ++ A+ P Y G + + T+ + LL + +N
Sbjct: 290 ILLRSKSQR---LAAAAFP---YSPTGSLPGSPSAATKCL---------SLLLQQQQNEN 334
Query: 301 RLIDRPHGQHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSN 358
R ++ +DA K+L R +R+D ++ GSRQIYLTFPA+STF E+DVSN
Sbjct: 335 RRHAAAAAAALMLGGDDAHKFLGRPRLDRADLASMMNPGSRQIYLTFPADSTFREEDVSN 394
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 395 YFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKV 454
Query: 419 VDRKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ---------- 465
D+ +++++ +D +LH +R + S + LL +
Sbjct: 455 PDKYRKQQLQGERVDFSNGLDARDHFDLHQLGARMLQHSHSANEMLLRRKLEEQQQQAAE 514
Query: 466 -EQAFELERRRLAELQLV-----RKPMP-----------------NPPYFGGYMDGLKIS 502
+QA EL+ RRL LQL+ P P +PP G + G K S
Sbjct: 515 LQQAMELQSRRLMGLQLLDLKTRSSPSPIGMPFSPTRAVASATVESPPDSGEH--GPKGS 572
Query: 503 EDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPI 557
ER NG + N +S NLPDSPFA+P
Sbjct: 573 SGFFLPQRGERPAV------NGGDKEESAGDASPNADGDQSAEHNLPDSPFASPT 621
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKD 60
Query: 58 LQQL 61
L L
Sbjct: 61 LGLL 64
>gi|449464832|ref|XP_004150133.1| PREDICTED: zinc finger CCCH domain-containing protein 22-like
[Cucumis sativus]
Length = 482
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 202/417 (48%), Gaps = 96/417 (23%)
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLE-L 239
L + C Y+ KGFCK+GS CR++H S DG G E +E
Sbjct: 54 LGWRPCLYYAKGFCKNGSGCRFFH--------------SGDG---------GRAEIVEEC 90
Query: 240 EIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTK----LLAR 295
+ LL++ G ++ V G+ YS T LL +
Sbjct: 91 NDVVLLRSNSG------------VQQRMGVGSVNGFFP---------YSPTTASELLLQQ 129
Query: 296 LKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSD---PGPIVTGSRQIYLTFPAESTFT 352
+N +R + + E++ R ERSD G +RQIYLTFPAES F
Sbjct: 130 QQNEMR-----RAVAGLSMGEESNNSGRFRLERSDFSGGGMGNPAARQIYLTFPAESCFK 184
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412
E+DVS YF+ YGPV DVRIP QQKRMFGFVTF A+TVK+ILAKGNPHFVC +RVLVKPY
Sbjct: 185 EEDVSKYFSIYGPVQDVRIPYQQKRMFGFVTFVYAETVKLILAKGNPHFVCDSRVLVKPY 244
Query: 413 REKSKLVDR-KYQERME----SPMYFSPQYVDMDSELHSFSRGCE----TSRFIRKQLLE 463
+EK K+ D+ + Q++ME SP +P +D +LH G + + ++ LE
Sbjct: 245 KEKGKVPDKFRKQQQMERGDLSPCG-TPTGLD-SRDLHDLHHGARMYYNSQDMLWRRKLE 302
Query: 464 EQ---EQAFELERRRLAELQL--VRKPM------------PNPPYFGGYM------DGLK 500
EQ +QA EL+ R+ LQL VRKP+ P+P F + +
Sbjct: 303 EQADLQQALELQALRVMSLQLADVRKPLHHHTPLSTCSPIPSPNPFNQTLFHSIPTNSQL 362
Query: 501 ISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQESEGL--NLPDSPFAN 555
+ E+ N R++ V+NN T D TD + L NLPDSPFA+
Sbjct: 363 LQENGSNHLPEIRVE--PQVMNNFDLTADS-DSSNGKETDLQETSLEHNLPDSPFAS 416
>gi|413955828|gb|AFW88477.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 684
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 137/253 (54%), Gaps = 31/253 (12%)
Query: 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAK
Sbjct: 366 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 425
Query: 397 GNPHFVCGARVLVKPYREKSKLVD--RKYQERMESPMYFSPQYVDMDS--ELHSFS---- 448
GNPHF+C ARVLVKPY+EK K+ D RK Q+ S +D +LH
Sbjct: 426 GNPHFICDARVLVKPYKEKGKVPDKCRKPQQGDFSGCTTPTGGLDGGYPFDLHQLGGRML 485
Query: 449 -RGCETSRFIRKQLLEEQEQAFELERRRLAELQLV----------RKPMPNPPYFGGYMD 497
+ + ++ LEEQ+QA EL+ RRL LQL+ P+P P +
Sbjct: 486 QHSSSANELLLRRKLEEQQQAIELQSRRLMGLQLLDLKARAAAAAASPLPT-PIGDAFAS 544
Query: 498 GLKISEDRLNFPSAE---------RIDYLIGVLNNGSTTGDRVKHVETNYTDQESEG--L 546
+S + PS R + + NG + + + D + G
Sbjct: 545 SQPVSTTAVESPSPPESGQQLLKLRSGFALEGKVNGGDKEESAREASPDAADSDQSGGEH 604
Query: 547 NLPDSPFANPIAS 559
NLPDSPFA+P S
Sbjct: 605 NLPDSPFASPTKS 617
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGEKEMIRLAFGPESLLHAVMAKARKD 60
Query: 58 LQQLAMKSASS 68
L L S +S
Sbjct: 61 LGLLLPASPTS 71
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFG 216
K C Y+ +GFCK+G +CR+ HG +S+ G
Sbjct: 234 KPCLYYARGFCKNGGSCRFVHGGLSDDAAAFAG 266
>gi|414888139|tpg|DAA64153.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 734
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 173/344 (50%), Gaps = 52/344 (15%)
Query: 111 NKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDC----------YYSD 160
N S F A G ++ELQ Q Q L D + +S+C ++
Sbjct: 145 NAPPSPFFAAG-EPLLDELQLQEQLAFLSDAAAGGHQLPLFDASECRSPGSGDAAGFFPY 203
Query: 161 AALSNLGARAGRRYQSLNAELPV--------KTCHYFNKGFCKHGSNCRYYHGLVSESFT 212
AL G R S +EL + K C Y+ +G+CK+GS CR+ HG +++ T
Sbjct: 204 GALGWANGGPGHRRSSSVSELCLGGADGLGWKPCLYYARGYCKNGSACRFVHGGLTDDAT 263
Query: 213 QMFGQTSPDGFNDDHLFSPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQA 272
+ LE+ +I+ K++R +A+ P Y G V +
Sbjct: 264 AKMDTAT--------------LEQQCQDILLRSKSQR-----LAAFP---YSPTGSVPGS 301
Query: 273 GGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLEN-RNERSDP 331
T K L + + R+ ++ +DA K++ R +R+D
Sbjct: 302 PSAAT------KCLSLLLHQQQQQNENQRVAAAAAAAALMLGGDDAHKFIGRPRLDRADL 355
Query: 332 GPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTV 390
+V GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TV
Sbjct: 356 ASLVNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETV 415
Query: 391 KMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFS 434
K+ILAKGNPHF+C ARVLVKPY+EK K+ D KY R SP FS
Sbjct: 416 KLILAKGNPHFICDARVLVKPYKEKGKVPD-KY--RHASPFLFS 456
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKD 60
Query: 58 LQQLAMKSASSPIS 71
L L +P S
Sbjct: 61 LGLLPSPGPGTPTS 74
>gi|242041061|ref|XP_002467925.1| hypothetical protein SORBIDRAFT_01g036490 [Sorghum bicolor]
gi|241921779|gb|EER94923.1| hypothetical protein SORBIDRAFT_01g036490 [Sorghum bicolor]
Length = 680
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 141/253 (55%), Gaps = 31/253 (12%)
Query: 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAK
Sbjct: 363 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 422
Query: 397 GNPHFVCGARVLVKPYREKSKLVD--RKYQERMESPMYFSPQYVDMDS--ELHSF-SRGC 451
GNPHF+C ARVLVKPY+EK K+ D RK Q+ S P +D +LH +R
Sbjct: 423 GNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFSGCTTPPGGLDARDPFDLHQLGARML 482
Query: 452 ETSR-----FIRKQLLEEQ-----EQAFELERRRLAELQLV------------RKPMPNP 489
+ S +R++L E+Q +QA EL+ RRL LQL+ P+P
Sbjct: 483 QHSNSANELLLRRKLEEQQQVAELQQAIELQSRRLMGLQLLDLKARAAATAAAASPLPT- 541
Query: 490 PYFGGYMDGLKISEDRLNFP--SAERIDYLIGVLNNGSTTGDRVKHVETNYTDQESEG-L 546
P + +S + P S E++ G G + + D + G
Sbjct: 542 PIANAFASSQLVSTIVVESPPESGEQLKLSSGFALEGKVNAGDKEESACDAADSDQSGEH 601
Query: 547 NLPDSPFANPIAS 559
NLPDSPFA+P S
Sbjct: 602 NLPDSPFASPTKS 614
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGEKEMIRLAFGPESLLHAVMAKARKD 60
Query: 58 LQQLAMKSASS 68
L L S +S
Sbjct: 61 LGLLLPASPTS 71
>gi|449476117|ref|XP_004154645.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
protein 46-like [Cucumis sativus]
Length = 675
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 169/316 (53%), Gaps = 48/316 (15%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C YF +GFCK+GSNC++ HG S+S SP LE L + E
Sbjct: 235 KPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVG----------SPSKLEGLFDQREE 284
Query: 244 LLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI 303
++ + +A+ L AG ++ SQ + + LL + + R
Sbjct: 285 FMRYKAAQQQRLAT---------ASELMAG--VSPSQYNKYINF----LLQQQNENHRAT 329
Query: 304 DRPHGQHAVILAEDAPKYLENRNERSDPGPIV-----TGSRQIYLTFPAESTFTEDDVSN 358
A+++ ++ K+ +R+ER+D + + SRQIYLTFPA+STF ++DVS
Sbjct: 330 -----AAALMMGDEYHKFGMSRSERNDFLALAAEKRNSASRQIYLTFPADSTFKDEDVSE 384
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ +GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHF+C +RVLVKPY+EK K+
Sbjct: 385 YFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKXILAKGNPHFICESRVLVKPYKEKGKV 444
Query: 419 VDRKYQ------ERMESPMYFSPQYVDM----DSELHSFSRGCETSRFIRKQLLEEQ--- 465
+++ Q +R + SP +D D L + T + ++ LEEQ
Sbjct: 445 PEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNLGARMMYNNTQGMMLRRKLEEQVEL 504
Query: 466 EQAFELERRRLAELQL 481
+QA EL+ RRL LQL
Sbjct: 505 QQALELQGRRLLNLQL 520
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T +V+ +IK L+PEN +KI+G+LL+Q ++E+I LA P+ ++ ++ KAKA
Sbjct: 1 MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|413955827|gb|AFW88476.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 687
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 134/263 (50%), Gaps = 48/263 (18%)
Query: 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAK
Sbjct: 366 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 425
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDS-------------- 442
GNPHF+C ARVLVKPY+EK K+ D+ PQ D
Sbjct: 426 GNPHFICDARVLVKPYKEKGKVPDKCRHA-------LKPQQGDFSGCTTPTGGLDGGYPF 478
Query: 443 ELHSFS-----RGCETSRFIRKQLLEEQEQAFELERRRLAELQLV----------RKPMP 487
+LH + + ++ LEEQ+QA EL+ RRL LQL+ P+P
Sbjct: 479 DLHQLGGRMLQHSSSANELLLRRKLEEQQQAIELQSRRLMGLQLLDLKARAAAAAASPLP 538
Query: 488 NPPYFGGYMDGLKISEDRLNFPSAE---------RIDYLIGVLNNGSTTGDRVKHVETNY 538
P + +S + PS R + + NG + + +
Sbjct: 539 T-PIGDAFASSQPVSTTAVESPSPPESGQQLLKLRSGFALEGKVNGGDKEESAREASPDA 597
Query: 539 TDQESEG--LNLPDSPFANPIAS 559
D + G NLPDSPFA+P S
Sbjct: 598 ADSDQSGGEHNLPDSPFASPTKS 620
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGEKEMIRLAFGPESLLHAVMAKARKD 60
Query: 58 LQQLAMKSASS 68
L L S +S
Sbjct: 61 LGLLLPASPTS 71
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFG 216
K C Y+ +GFCK+G +CR+ HG +S+ G
Sbjct: 234 KPCLYYARGFCKNGGSCRFVHGGLSDDAAAFAG 266
>gi|449442555|ref|XP_004139047.1| PREDICTED: zinc finger CCCH domain-containing protein 46-like
[Cucumis sativus]
Length = 675
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 169/316 (53%), Gaps = 48/316 (15%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C YF +GFCK+GSNC++ HG S+S SP LE L + E
Sbjct: 235 KPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVG----------SPSKLEGLFDQREE 284
Query: 244 LLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI 303
++ + +A+ L AG ++ SQ + + LL + + R
Sbjct: 285 FMRYKAAQQQRLAT---------ASELMAG--VSPSQYNKYINF----LLQQQNENHRAT 329
Query: 304 DRPHGQHAVILAEDAPKYLENRNERSDPGPIV-----TGSRQIYLTFPAESTFTEDDVSN 358
A+++ ++ K+ +R+ER+D + + SRQIYLTFPA+STF ++DVS
Sbjct: 330 -----AAALMMGDEYHKFGMSRSERNDFLALAAEKRNSASRQIYLTFPADSTFKDEDVSE 384
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ +GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHF+C +RVLVKPY+EK K+
Sbjct: 385 YFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKNILAKGNPHFICESRVLVKPYKEKGKV 444
Query: 419 VDRKYQ------ERMESPMYFSPQYVDM----DSELHSFSRGCETSRFIRKQLLEEQ--- 465
+++ Q +R + SP +D D L + T + ++ LEEQ
Sbjct: 445 PEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNLGARMMYNNTQGMMLRRKLEEQVEL 504
Query: 466 EQAFELERRRLAELQL 481
+QA EL+ RRL LQL
Sbjct: 505 QQALELQGRRLLNLQL 520
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T +V+ +IK L+PEN +KI+G+LL+Q ++E+I LA P+ ++ ++ KAKA
Sbjct: 1 MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|222624858|gb|EEE58990.1| hypothetical protein OsJ_10700 [Oryza sativa Japonica Group]
Length = 686
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 206/420 (49%), Gaps = 76/420 (18%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ +GFCK+GS+CR+ HG + + T + E+ + +
Sbjct: 237 KPCLYYARGFCKNGSSCRFVHGDDAAALTGA-------------AMDAATAEQQQCQDFL 283
Query: 244 LL-KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRL 302
L K++R P A+ P Y G + + T+ L+ LL + N +
Sbjct: 284 LRSKSQRLGP---AAFP---YSPTGSLPGSPSAATKC---------LSLLLQQQHNDNQ- 327
Query: 303 IDRPHGQHAVIL--AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSN 358
R A++L +++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSN
Sbjct: 328 --RAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSN 385
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 386 YFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKV 445
Query: 419 VDRKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ---------- 465
D+K+Q +P +D +LH +R + S + +L +
Sbjct: 446 PDKKHQGDFSG--CTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAEL 503
Query: 466 EQAFELERRRLAELQLV--------------RKPMPNPPYFGGYMDGLKISEDRLNFP-- 509
+QA EL RRL +LQL+ +P FG ++ + P
Sbjct: 504 QQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQ---PLATTMVESPPD 560
Query: 510 SAERI---DYLI---GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGIST 563
S E++ Y ++N G + N +S NLPDSPFA+P S +S
Sbjct: 561 SGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSA 620
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL 61
L L
Sbjct: 61 LALL 64
>gi|218192752|gb|EEC75179.1| hypothetical protein OsI_11406 [Oryza sativa Indica Group]
Length = 686
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 206/420 (49%), Gaps = 76/420 (18%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ +GFCK+GS+CR+ HG + + T + E+ + +
Sbjct: 237 KPCLYYARGFCKNGSSCRFVHGDDAAALTGA-------------AMDAATAEQQQCQDFL 283
Query: 244 LL-KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRL 302
L K++R P A+ P Y G + + T+ L+ LL + N +
Sbjct: 284 LRSKSQRLGP---AAFP---YSPTGSLPGSPSAATKC---------LSLLLQQQHNDNQ- 327
Query: 303 IDRPHGQHAVIL--AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSN 358
R A++L +++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSN
Sbjct: 328 --RAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSN 385
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 386 YFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKV 445
Query: 419 VDRKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ---------- 465
D+K+Q +P +D +LH +R + S + +L +
Sbjct: 446 PDKKHQGDFSG--CTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMILRRKLEEQQQAAEL 503
Query: 466 EQAFELERRRLAELQLV--------------RKPMPNPPYFGGYMDGLKISEDRLNFP-- 509
+QA EL RRL +LQL+ +P FG ++ + P
Sbjct: 504 QQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQ---PLATTMVESPPD 560
Query: 510 SAERI---DYLI---GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGIST 563
S E++ Y ++N G + N +S NLPDSPFA+P S +S
Sbjct: 561 SGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSA 620
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL 61
L L
Sbjct: 61 LALL 64
>gi|414876221|tpg|DAA53352.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 587
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 168/330 (50%), Gaps = 71/330 (21%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ GFCK+G +CR+ HG G +DD + G+ K+E +
Sbjct: 227 KPCLYYASGFCKNGGSCRFVHG----------------GLSDDAVALAGT--KMEAAADQ 268
Query: 244 ------LLKARRGNPISIASLPMLYYEKYGKVLQAGG--------YLTESQRHGKAGYSL 289
L +G + A P Y G + + L + Q+H +A +
Sbjct: 269 QQQCQDFLIRSKGQRLGPAVFP---YSPTGSLPGSPSAASKCLSFLLQQRQQHDRAAAAA 325
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAE 348
+ +L + + + RP R +R+D ++ SRQIYLTFPA+
Sbjct: 326 SLMLGGGDEAHKFMARP------------------RLDRADFASLMNPSSRQIYLTFPAD 367
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C RVL
Sbjct: 368 STFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDTRVL 427
Query: 409 VKPYREKSKLVDR-KYQERMESPMYFSPQYVDMDS----ELHSFS-----RGCETSRFIR 458
VKPY+EK K+ D+ + Q++ + Y +P +D+ +LH + +
Sbjct: 428 VKPYKEKGKVPDKYRKQQQGDFSGYTTPTG-GLDARDPFDLHQLGARMLQHSNSANELLL 486
Query: 459 KQLLEEQEQ------AFELERRRLAELQLV 482
++ LEEQ+Q A EL+ RRL LQL+
Sbjct: 487 RRKLEEQQQAAELQHAIELQSRRLMGLQLL 516
>gi|115452803|ref|NP_001050002.1| Os03g0328900 [Oryza sativa Japonica Group]
gi|108707942|gb|ABF95737.1| Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed [Oryza
sativa Japonica Group]
gi|113548473|dbj|BAF11916.1| Os03g0328900 [Oryza sativa Japonica Group]
gi|215734917|dbj|BAG95639.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 687
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/419 (32%), Positives = 204/419 (48%), Gaps = 72/419 (17%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ +GFCK+GS+CR+ HG + + T + E+ + + +
Sbjct: 237 KPCLYYARGFCKNGSSCRFVHGDDAAALTGA-------------AMDAATAEQQQCQ--D 281
Query: 244 LLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI 303
L + + A+ P Y G + + T+ L+ LL + N +
Sbjct: 282 FLLRSKSQRLGPAAFP---YSPTGSLPGSPSAATKC---------LSLLLQQQHNDNQ-- 327
Query: 304 DRPHGQHAVIL--AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNY 359
R A++L +++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNY
Sbjct: 328 -RAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNY 386
Query: 360 FNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
F+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 387 FSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVP 446
Query: 420 DRKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------E 466
D+ + + + +P +D +LH +R + S + +L + +
Sbjct: 447 DKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQ 506
Query: 467 QAFELERRRLAELQLV--------------RKPMPNPPYFGGYMDGLKISEDRLNFP--S 510
QA EL RRL +LQL+ +P FG ++ + P S
Sbjct: 507 QAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQ---PLATTMVESPPDS 563
Query: 511 AERI---DYLI---GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGIST 563
E++ Y ++N G + N +S NLPDSPFA+P S +S
Sbjct: 564 GEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSA 622
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL 61
L L
Sbjct: 61 LALL 64
>gi|205688046|sp|Q10M00.2|C3H22_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 22;
Short=OsC3H22
gi|108707943|gb|ABF95738.1| Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed [Oryza
sativa Japonica Group]
Length = 688
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/419 (32%), Positives = 204/419 (48%), Gaps = 72/419 (17%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ +GFCK+GS+CR+ HG + + T + E+ + + +
Sbjct: 237 KPCLYYARGFCKNGSSCRFVHGDDAAALTGA-------------AMDAATAEQQQCQ--D 281
Query: 244 LLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI 303
L + + A+ P Y G + + T+ L+ LL + N +
Sbjct: 282 FLLRSKSQRLGPAAFP---YSPTGSLPGSPSAATKC---------LSLLLQQQHNDNQ-- 327
Query: 304 DRPHGQHAVIL--AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNY 359
R A++L +++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNY
Sbjct: 328 -RAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNY 386
Query: 360 FNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
F+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 387 FSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVP 446
Query: 420 DRKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------E 466
D+ + + + +P +D +LH +R + S + +L + +
Sbjct: 447 DKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQ 506
Query: 467 QAFELERRRLAELQLV--------------RKPMPNPPYFGGYMDGLKISEDRLNFP--S 510
QA EL RRL +LQL+ +P FG ++ + P S
Sbjct: 507 QAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQ---PLATTMVESPPDS 563
Query: 511 AERI---DYLI---GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGIST 563
E++ Y ++N G + N +S NLPDSPFA+P S +S
Sbjct: 564 GEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSA 622
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL 61
L L
Sbjct: 61 LALL 64
>gi|224054504|ref|XP_002298293.1| predicted protein [Populus trichocarpa]
gi|222845551|gb|EEE83098.1| predicted protein [Populus trichocarpa]
Length = 674
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 169/318 (53%), Gaps = 47/318 (14%)
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELE 240
L + C YF +GFCK+G +C++ HG + + + G + SP +E+L L+
Sbjct: 237 LRYRQCLYFARGFCKNGESCKFGHGDENMAEVNVGGAL---------VSSPREMEELYLQ 287
Query: 241 IIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSV 300
E + R+ + M+ K V Q +H + LL + +
Sbjct: 288 QQEEMMKRKA--VQQQQEEMM---KMKAVQQQQQQRLAYNKH------MNFLLLQQNEAE 336
Query: 301 RLIDRPHGQHAVILAEDAPKYLENRNERSD------PGPIVTGSRQIYLTFPAESTFTED 354
R A ++ ++ K+ R R+D + SRQIYLTFPA+S+F ++
Sbjct: 337 RF-------GAAMMGDEFYKFGRTRGGRNDFLAMGMAEKANSASRQIYLTFPADSSFKDE 389
Query: 355 DVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414
DVSNYF+++GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPH++C +RVLVKPY+E
Sbjct: 390 DVSNYFSSFGPVQDVRIPYQQKRMFGFVTFVYPETVKEILAKGNPHYICESRVLVKPYKE 449
Query: 415 KSKLVDRKYQ--ER-----MESPMYFSPQYVDMDSELHSFSRGC-ETSRFIRKQLLEEQ- 465
K K+ +R Q ER SP F P+ + +LH +R T + ++ LEEQ
Sbjct: 450 KGKVANRTQQLLERGGFSPASSPSGFDPREL---CDLHLGARMLYNTPEMMLRRKLEEQA 506
Query: 466 --EQAFELERRRLAELQL 481
+QA EL+ RRL LQL
Sbjct: 507 ELQQAIELQGRRLINLQL 524
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E T I+ ++K LDPEN ++I+G++L+Q E++++ LA P+ ++Q VV+KAK
Sbjct: 1 MDTHEITNILLTKLKSLDPENASRIMGFILIQDPTEKDLLRLAFGPETLLQNVVFKAKIH 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|222624859|gb|EEE58991.1| hypothetical protein OsJ_10701 [Oryza sativa Japonica Group]
Length = 677
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 187/408 (45%), Gaps = 67/408 (16%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ +GFCK+GS CR+ HG G +DD + E+ + +
Sbjct: 232 KPCLYYARGFCKNGSTCRFVHG----------------GLSDDAAMDATTAEQQQCQDFL 275
Query: 244 LL-KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRL 302
L K++R P + P G L S SL + N +
Sbjct: 276 LRSKSQRLGPAAFPFTPT-------------GSLPASPSATSKCLSLLLQQQQQHNDNQR 322
Query: 303 IDRPHGQHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYF 360
+ ++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNYF
Sbjct: 323 AAA--AALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYF 380
Query: 361 NTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD 420
+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D
Sbjct: 381 SIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD 440
Query: 421 RKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------EQ 467
+ +++ SP +D + H +R + S + +L + +Q
Sbjct: 441 KYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQ 500
Query: 468 AFELERRRLAELQLV------------RKPMPNP-PYFGGYMDGLKISEDRLNFPSAERI 514
A +L RRL LQL+ M P P + G + + P +
Sbjct: 501 AIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTG 560
Query: 515 DYLI-------GVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFAN 555
+ G + NG D V N +S NLPDSPFA+
Sbjct: 561 QLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHNLPDSPFAS 608
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 5/82 (6%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL--AMKSASSPISPSMNSP 77
L L ++SSP P+ +SP
Sbjct: 61 LALLPPPQAASSSPTVPAAHSP 82
>gi|414866608|tpg|DAA45165.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 675
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 150/278 (53%), Gaps = 34/278 (12%)
Query: 315 AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP 372
++A K++ R +R+D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP
Sbjct: 339 GDEAHKFMARPRLDRADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIP 398
Query: 373 CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMY 432
QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+ +++
Sbjct: 399 YQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFSG 458
Query: 433 FSPQYVDMDS----ELHSFS-----RGCETSRFIRKQLLEEQEQ------AFELERRRLA 477
+ +D+ +LH + + ++ LEEQ+Q A EL+ RRL
Sbjct: 459 CTTPTGGLDARDPFDLHQLGARMLQHSNSANELLLRRKLEEQQQAAELQHAIELQSRRLM 518
Query: 478 ELQLV---------RKPMPNPPYFGGYMDGLKISEDRLNFP--SAERIDY-----LIGVL 521
LQL+ +P P + +S + P S E++ L G L
Sbjct: 519 GLQLLDLKARAAATASALPT-PIANAFASSHPLSTMAVESPLESGEQLKLSSGFALDGKL 577
Query: 522 NNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIAS 559
N G + +S NLPDSPFA+P S
Sbjct: 578 NGGDKEESACEASPDAADSDQSGEHNLPDSPFASPTKS 615
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 53/267 (19%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q E+EMI LA P+ ++ V+ KA+ +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGEKEMIRLAFGPESLLHAVMAKARKD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQ--------------------FNPFSSRPPVSPA 97
L L S +S ++ + ++P ++ Q P SR +
Sbjct: 61 LGLLLPASPTS-VAAAGHAPFLQLPRQNSGRAGAPSPLSVSSPSSWSHAPVFSRSNSTSN 119
Query: 98 GCRVPSYWDHQV----TNKNNSDFVALGYSDS-INELQSQTQFLSLED---QMEHVNLGN 149
G + + N + F D+ +++LQ Q Q L + H LG
Sbjct: 120 GTAEEAAGAGEELPSPVNGGAAPFFPRQAGDALLDDLQLQEQLAFLNEGGGNPAHQLLGF 179
Query: 150 TG--------FSSDCYYSDAALSNLGARAGRRYQSLNAELPV------------KTCHYF 189
G +D ++ + G A RR S+N EL + K C Y+
Sbjct: 180 DGGECRSPGPGDADGMFAFGLGWHNGGPAHRRSSSVN-ELCLGGGGGGGDGFGWKPCLYY 238
Query: 190 NKGFCKHGSNCRYYHGLVSESFTQMFG 216
+GFCK+G +CR+ HG +S+ + G
Sbjct: 239 ARGFCKNGGSCRFVHGGLSDDAAALAG 265
>gi|449525104|ref|XP_004169559.1| PREDICTED: zinc finger CCCH domain-containing protein 46-like
[Cucumis sativus]
Length = 349
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 151/268 (56%), Gaps = 42/268 (15%)
Query: 325 RNERSD---PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGF 381
R ERSD G +RQIYLTFPAES F E+DVS YF+ YGPV DVRIP QQKRMFGF
Sbjct: 21 RLERSDFSGGGMGNPAARQIYLTFPAESCFKEEDVSKYFSIYGPVQDVRIPYQQKRMFGF 80
Query: 382 VTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR-KYQERME----SPMYFSPQ 436
VTF A+TVK+ILAKGNPHFVC +RVLVKPY+EK K+ D+ + Q++ME SP +P
Sbjct: 81 VTFVYAETVKLILAKGNPHFVCDSRVLVKPYKEKGKVPDKFRKQQQMERGDLSPCG-TPT 139
Query: 437 YVDMDSELHSFSRGCE----TSRFIRKQLLEEQ---EQAFELERRRLAELQL--VRKPM- 486
+D +LH G + + ++ LEEQ +QA EL+ R+ LQL VRKP+
Sbjct: 140 GLD-SRDLHDLHHGARMYYNSQDMLWRRKLEEQADLQQALELQALRVMSLQLADVRKPLH 198
Query: 487 -----------PNPPYFGGYM------DGLKISEDRLNFPSAERIDYLIGVLNNGSTTGD 529
P+P F + + + E+ N R++ V+NN T D
Sbjct: 199 HHTPLSTCSPIPSPNPFNQTLFHSIPTNSQLLQENGSNHLPEIRVE--PQVMNNFDLTAD 256
Query: 530 RVKHVETNYTDQESEGL--NLPDSPFAN 555
TD + L NLPDSPFA+
Sbjct: 257 S-DSSNGKETDLQETSLEHNLPDSPFAS 283
>gi|414866607|tpg|DAA45164.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 356
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 137/257 (53%), Gaps = 36/257 (14%)
Query: 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAK
Sbjct: 44 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 103
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDS----ELHSFS---- 448
GNPHF+C ARVLVKPY+EK K+ D+ +++ + +D+ +LH
Sbjct: 104 GNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFSGCTTPTGGLDARDPFDLHQLGARML 163
Query: 449 -RGCETSRFIRKQLLEEQEQ------AFELERRRLAELQLV---------RKPMPNP--- 489
+ + ++ LEEQ+Q A EL+ RRL LQL+ +P P
Sbjct: 164 QHSNSANELLLRRKLEEQQQAAELQHAIELQSRRLMGLQLLDLKARAAATASALPTPIAN 223
Query: 490 ------PYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQES 543
P ++ S ++L S +D G LN G + +S
Sbjct: 224 AFASSHPLSTMAVESPLESGEQLKLSSGFALD---GKLNGGDKEESACEASPDAADSDQS 280
Query: 544 EGLNLPDSPFANPIASG 560
NLPDSPFA+P S
Sbjct: 281 GEHNLPDSPFASPTKSA 297
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQEMIHLAMSP 43
MD E+T++VF+RI+ LDP++ KI+G LL+Q++ M+P
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDRADFASMMNP 43
>gi|414866609|tpg|DAA45166.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 317
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 137/255 (53%), Gaps = 32/255 (12%)
Query: 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAK
Sbjct: 5 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 64
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDS----ELHSFS---- 448
GNPHF+C ARVLVKPY+EK K+ D+ +++ + +D+ +LH
Sbjct: 65 GNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFSGCTTPTGGLDARDPFDLHQLGARML 124
Query: 449 -RGCETSRFIRKQLLEEQEQ------AFELERRRLAELQLV---------RKPMPNPPYF 492
+ + ++ LEEQ+Q A EL+ RRL LQL+ +P P
Sbjct: 125 QHSNSANELLLRRKLEEQQQAAELQHAIELQSRRLMGLQLLDLKARAAATASALPT-PIA 183
Query: 493 GGYMDGLKISEDRLNFP--SAERIDY-----LIGVLNNGSTTGDRVKHVETNYTDQESEG 545
+ +S + P S E++ L G LN G + +S
Sbjct: 184 NAFASSHPLSTMAVESPLESGEQLKLSSGFALDGKLNGGDKEESACEASPDAADSDQSGE 243
Query: 546 LNLPDSPFANPIASG 560
NLPDSPFA+P S
Sbjct: 244 HNLPDSPFASPTKSA 258
>gi|414876222|tpg|DAA53353.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 625
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/413 (32%), Positives = 182/413 (44%), Gaps = 121/413 (29%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ GFCK+G +CR+ HG G +DD + G+ K+E +
Sbjct: 227 KPCLYYASGFCKNGGSCRFVHG----------------GLSDDAVALAGT--KMEAAADQ 268
Query: 244 ------LLKARRGNPISIASLPMLYYEKYGKVLQAGG--------YLTESQRHGKAGYSL 289
L +G + A P Y G + + L + Q+H +A +
Sbjct: 269 QQQCQDFLIRSKGQRLGPAVFP---YSPTGSLPGSPSAASKCLSFLLQQRQQHDRAAAAA 325
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAE 348
+ +L + + + RP R +R+D ++ SRQIYLTFPA+
Sbjct: 326 SLMLGGGDEAHKFMARP------------------RLDRADFASLMNPSSRQIYLTFPAD 367
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C RVL
Sbjct: 368 STFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDTRVL 427
Query: 409 VKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQ- 467
VKPY+EK K HS S + + ++ LEEQ+Q
Sbjct: 428 VKPYKEKGK---------------------------HSNS----ANELLLRRKLEEQQQA 456
Query: 468 -----AFELERRRLAELQLV------------RKPMPNPPYFGGYMDGLKISEDRLNFP- 509
A EL+ RRL LQL+ +P P + +S + P
Sbjct: 457 AELQHAIELQSRRLMGLQLLDLKARAAATAAAASALPT-PVVNAFASIHPLSTMAVESPL 515
Query: 510 -SAERIDYLIGVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASGI 561
S E++ G G G H NLPDSPFA+P S +
Sbjct: 516 ESGEQLKLSSGFALEGKLNGG--DH-------------NLPDSPFASPTKSDV 553
>gi|449533070|ref|XP_004173500.1| PREDICTED: zinc finger CCCH domain-containing protein 46-like
[Cucumis sativus]
Length = 450
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 122/190 (64%), Gaps = 20/190 (10%)
Query: 312 VILAEDAPKYLEN----RNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
+++ ED K+ + RNE S G I SRQIYLTFPA+STF E+DVSNYF+ YG
Sbjct: 62 LMMGEDLHKFSRSSRLERNEFSLNGSAGIINPASRQIYLTFPADSTFKEEDVSNYFSMYG 121
Query: 365 PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ 424
PV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHFVC ARVLVKPY+EK K+ D KY+
Sbjct: 122 PVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPD-KYR 180
Query: 425 ERMESPMYFSP--QYVDMDS-----ELHSFSRGCETSR--FIRKQLLEEQE---QAFELE 472
++ + FSP +DS L SR S + ++ LEEQ+ Q +L+
Sbjct: 181 KQQQIDRDFSPCGTPTGLDSRELYDHLQLGSRMFYNSHQDLLWRRKLEEQQADLQTLDLQ 240
Query: 473 RRRLAELQLV 482
RRL LQL+
Sbjct: 241 SRRLLNLQLL 250
>gi|14586374|emb|CAC42905.1| putative protein [Arabidopsis thaliana]
Length = 574
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 163/325 (50%), Gaps = 70/325 (21%)
Query: 183 VKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLF--SPGSLEKLELE 240
K C YF++G CK+G +C++ HG PD + + + SP +E +
Sbjct: 154 CKPCVYFSRGLCKNGESCKFIHG------------GYPDNMDGNGIVADSPRKMENFVRQ 201
Query: 241 IIELLKAR------RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKL-- 292
E+++ + R + P L YEK L +QR G + +
Sbjct: 202 HEEMMRLKLAYQQQRLASQILGRAPQLPYEKRMDFL----LQQHAQRDGGLPFGDERFWS 257
Query: 293 -----LARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPA 347
L R++ ++ L D+ + + SRQIYLTFPA
Sbjct: 258 SSPGRLERMELAMHLGDQSN----------------------------SASRQIYLTFPA 289
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA +TVK++LA+GNPHF+C +RV
Sbjct: 290 DSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRV 349
Query: 408 LVKPYREKSKLVDRKYQ-------ERMESPMYFSPQYVD--MDSELHSFSRGCETSRFIR 458
LVKPY+EK K++D+K Q ER SP +D S+ H S+ R +
Sbjct: 350 LVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHLGSKMLYERREMM 409
Query: 459 KQLLEEQE--QAFELERRRLAELQL 481
++ +E+ + +A ELERRR LQL
Sbjct: 410 RRKIEQADLLRAIELERRRFINLQL 434
>gi|240256278|ref|NP_568277.5| zinc finger CCCH domain-containing protein 55 [Arabidopsis
thaliana]
gi|334187639|ref|NP_001190296.1| zinc finger CCCH domain-containing protein 55 [Arabidopsis
thaliana]
gi|334187641|ref|NP_001190297.1| zinc finger CCCH domain-containing protein 55 [Arabidopsis
thaliana]
gi|334302925|sp|Q94CJ8.3|C3H55_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 55;
Short=AtC3H55
gi|26453236|dbj|BAC43691.1| unknown protein [Arabidopsis thaliana]
gi|27311807|gb|AAO00869.1| putative protein [Arabidopsis thaliana]
gi|332004426|gb|AED91809.1| zinc finger CCCH domain-containing protein 55 [Arabidopsis
thaliana]
gi|332004427|gb|AED91810.1| zinc finger CCCH domain-containing protein 55 [Arabidopsis
thaliana]
gi|332004428|gb|AED91811.1| zinc finger CCCH domain-containing protein 55 [Arabidopsis
thaliana]
Length = 650
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 163/325 (50%), Gaps = 70/325 (21%)
Query: 183 VKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLF--SPGSLEKLELE 240
K C YF++G CK+G +C++ HG PD + + + SP +E +
Sbjct: 230 CKPCVYFSRGLCKNGESCKFIHG------------GYPDNMDGNGIVADSPRKMENFVRQ 277
Query: 241 IIELLKAR------RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKL-- 292
E+++ + R + P L YEK L +QR G + +
Sbjct: 278 HEEMMRLKLAYQQQRLASQILGRAPQLPYEKRMDFL----LQQHAQRDGGLPFGDERFWS 333
Query: 293 -----LARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPA 347
L R++ ++ L D+ + + SRQIYLTFPA
Sbjct: 334 SSPGRLERMELAMHLGDQSN----------------------------SASRQIYLTFPA 365
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA +TVK++LA+GNPHF+C +RV
Sbjct: 366 DSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRV 425
Query: 408 LVKPYREKSKLVDRKYQ-------ERMESPMYFSPQYVD--MDSELHSFSRGCETSRFIR 458
LVKPY+EK K++D+K Q ER SP +D S+ H S+ R +
Sbjct: 426 LVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHLGSKMLYERREMM 485
Query: 459 KQLLEEQE--QAFELERRRLAELQL 481
++ +E+ + +A ELERRR LQL
Sbjct: 486 RRKIEQADLLRAIELERRRFINLQL 510
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD ++T ++ +I+ L+P+ KIIGYLLL +++++HLA P+ ++Q + K K+
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|413924734|gb|AFW64666.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 633
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 114/182 (62%), Gaps = 24/182 (13%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G ++ +RQIYLTFPA+STF+E+DVSNYF+ +GPV DVRIP QQKRMFGFV
Sbjct: 253 RSPRMDRGDLIGSPAARQIYLTFPADSTFSEEDVSNYFSMFGPVQDVRIPYQQKRMFGFV 312
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQERMESPMYF----SP- 435
TF A+TVK IL+KGNPHFVC ARVLVKPY+EK K+ D RK Q F SP
Sbjct: 313 TFVYAETVKAILSKGNPHFVCDARVLVKPYKEKGKVPDRFRKLQHTHHGGAEFVGCASPT 372
Query: 436 -----------QYVDMDSELHSFSRGCETSRFIRKQLLEEQ----EQAFELERRRLAELQ 480
Q + S + + + F+R++L EEQ +QA ELE RR LQ
Sbjct: 373 GLLDSRDPYDLQQPQIGSRMMYGNIANQHEAFLRRKLEEEQAAELQQAIELEGRRFMGLQ 432
Query: 481 LV 482
L+
Sbjct: 433 LL 434
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 49/215 (22%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+R++ LDPEN +K++G LL+Q+ +E+I LA P+ ++ V A+AE
Sbjct: 1 MDAWEATKVVFDRVRALDPENASKMMGLLLIQDNSDKELIRLAFGPEHLLHSFVATARAE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LA K AS P SPV P S P + + ++S F
Sbjct: 61 ---LAAKPASPP------SPV------LGPLQSGAPWGLPSPGSGAGGGGGGDHHHHSPF 105
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDA--ALSNLGAR-AGRRY 174
A DQ LG G +D +Y+D S GA A RR
Sbjct: 106 AA-------------------ADQ-----LGYDG-GADAFYADEYDCWSPAGAAGAHRRS 140
Query: 175 QSLN---AELPVKTCHYFNKGFCKHGSNCRYYHGL 206
SL+ A + C Y+ +G+CK+GS+CR+ HG+
Sbjct: 141 FSLSDAEAAASWRPCMYYARGYCKNGSSCRFLHGV 175
>gi|218192753|gb|EEC75180.1| hypothetical protein OsI_11407 [Oryza sativa Indica Group]
Length = 677
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 132/252 (52%), Gaps = 33/252 (13%)
Query: 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396
GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAK
Sbjct: 357 GSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 416
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDS--ELHSF-SRGCET 453
GNPHF+C ARVLVKPY+EK K+ D+ +++ SP +D + H +R +
Sbjct: 417 GNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQH 476
Query: 454 SRFIRKQLLEEQ----------EQAFELERRRLAELQLV------------RKPMPNP-P 490
S + +L + +QA +L RRL LQL+ M P P
Sbjct: 477 SNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTP 536
Query: 491 YFGGYMDGLKISEDRLNFPSAERIDYLI-------GVLNNGSTTGDRVKHVETNYTDQES 543
+ G + + P + + G + NG D V N +S
Sbjct: 537 ITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQS 596
Query: 544 EGLNLPDSPFAN 555
NLPDSPFA+
Sbjct: 597 GEHNLPDSPFAS 608
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 114/259 (44%), Gaps = 54/259 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL--AMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNS 115
L L ++SSP P+ +SP +S Q + P S P + + N +
Sbjct: 61 LALLPPPQAASSSPTVPAAHSPF-LLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAA 119
Query: 116 D-------------------------FVALGYSDSINELQSQTQFLSLEDQMEHVNLGNT 150
D F G +++ + Q Q L D VN G+
Sbjct: 120 DEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGGVNPGHA 179
Query: 151 --------------GFSSDCYYSDAALSNLGARAGRRYQSLNAELPV-------KTCHYF 189
G S A +N G RR S+N EL + K C Y+
Sbjct: 180 LQAFDGAECRSPGPGESGGMLPYGLAWAN-GGPGHRRSASVN-ELCLGGDGFGWKPCLYY 237
Query: 190 NKGFCKHGSNCRYYHGLVS 208
+GFCK+GS CR+ HG +S
Sbjct: 238 ARGFCKNGSTCRFVHGGLS 256
>gi|293333413|ref|NP_001169691.1| uncharacterized protein LOC100383572 [Zea mays]
gi|224030935|gb|ACN34543.1| unknown [Zea mays]
Length = 630
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 20/173 (11%)
Query: 328 RSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFA 385
R D G +V+ +RQIYLTFPA+STF EDDVSNYF+ YGPV DVRIP QQKRMFGFV+F
Sbjct: 267 RMDRGELVSSPAARQIYLTFPADSTFGEDDVSNYFSMYGPVQDVRIPYQQKRMFGFVSFV 326
Query: 386 SADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR--KYQER--------------MES 429
A+TV++IL KGNPHFVC ARVLVKPY+EK K+ DR K Q ++S
Sbjct: 327 YAETVRIILCKGNPHFVCDARVLVKPYKEKGKVPDRFRKLQHPHLGDFAGCTSPTGLLDS 386
Query: 430 PMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLV 482
F Q + + + F+R++L EEQ+QA ELE RR L L+
Sbjct: 387 RDPFDLQQPQIGPRM-MYGNIANHEAFLRRKL-EEQQQAIELEGRRFMGLHLL 437
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 62/220 (28%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T+ VF+R++ LDP+N +KI+G LL+Q ++E+I LA PD +++ A
Sbjct: 1 MDAWEATKAVFDRVRALDPDNASKIMGLLLIQDNSDKELIRLAFGPD----HILHAFAAA 56
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
+ +SP SP + P+++ + + P S + P DH
Sbjct: 57 ARADLAAKPASPPSP-VPGPLHQPASPWAPPSDH-------QQAPFAADH---------- 98
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSD--AALSNLGARAGRRYQ 175
ALGY G +D ++SD S GA A RR
Sbjct: 99 -ALGYD-------------------------YDGADADTFFSDDYDCWSPAGATAHRRSF 132
Query: 176 SL-NAELPV--------KTCHYFNKGFCKHGSNCRYYHGL 206
SL +AEL + C YF +GFCK+GS CR+ HGL
Sbjct: 133 SLSDAELAAAAAGPGAWRPCMYFARGFCKNGSACRFLHGL 172
>gi|224029225|gb|ACN33688.1| unknown [Zea mays]
Length = 605
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 20/173 (11%)
Query: 328 RSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFA 385
R D G +V+ +RQIYLTFPA+STF EDDVSNYF+ YGPV DVRIP QQKRMFGFV+F
Sbjct: 242 RMDRGELVSSPAARQIYLTFPADSTFGEDDVSNYFSMYGPVQDVRIPYQQKRMFGFVSFV 301
Query: 386 SADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR--KYQER--------------MES 429
A+TV++IL KGNPHFVC ARVLVKPY+EK K+ DR K Q ++S
Sbjct: 302 YAETVRIILCKGNPHFVCDARVLVKPYKEKGKVPDRFRKLQHPHLGDFAGCTSPTGLLDS 361
Query: 430 PMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLV 482
F Q + + + F+R++L EEQ+QA ELE RR L L+
Sbjct: 362 RDPFDLQQPQIGPRM-MYGNIANHEAFLRRKL-EEQQQAIELEGRRFMGLHLL 412
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 151 GFSSDCYYSDA--ALSNLGARAGRRYQSL-NAELPV--------KTCHYFNKGFCKHGSN 199
G +D ++SD S GA A RR SL +AEL + C YF +GFCK+GS
Sbjct: 81 GADADTFFSDDYDCWSPAGATAHRRSFSLSDAELAAAAAGPGAWRPCMYFARGFCKNGSA 140
Query: 200 CRYYHGL 206
CR+ HGL
Sbjct: 141 CRFLHGL 147
>gi|224054502|ref|XP_002298292.1| predicted protein [Populus trichocarpa]
gi|222845550|gb|EEE83097.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 103/148 (69%), Gaps = 10/148 (6%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
SRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF A+TV++ILAKG
Sbjct: 281 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVFAETVRLILAKG 340
Query: 398 NPHFVCGARVLVKPYREKSKLVDRKYQ-----ERMESPMYFSPQYVDMDS--ELHSFSRG 450
NPHFVC +RVLVKPY+EK K+ D+K+ ER E SP ++ +LH +R
Sbjct: 341 NPHFVCDSRVLVKPYKEKGKVPDKKHHQQQQIEREEYSACPSPSRINSREAFDLHIGARM 400
Query: 451 C-ETSRFIRKQLLEEQ--EQAFELERRR 475
T + ++L EE +QA E + RR
Sbjct: 401 LYNTQEMLSRKLKEEADFQQAIESQGRR 428
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 42/229 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+ +VF+RI+ L+PEN +KI+GYLLLQ E+EMI A P+ ++ ++ AK +
Sbjct: 1 MDSYEAANMVFSRIQNLEPENASKIMGYLLLQDYGEKEMIRFAFGPETLLHNLILYAKTQ 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRP-PVSPAGCRVPSYWDHQVTNKNNSD 116
L L+ K++SSP P SSRP P+S R+ + +TN ++
Sbjct: 61 LGFLSNKTSSSPFIP----------------SSRPSPLSIPSSRITNNNGFDITNPSSPS 104
Query: 117 FVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDA-ALSNLGARAGRRY- 174
+ +S S + S+ + +N +T F S+A SN + +Y
Sbjct: 105 TNSWHFSTP--NSTSPLSYASVVNGASSINASSTPFQPTVSLSNAFPYSNNNTTSPTKYG 162
Query: 175 ------------------QSLNAELPVKTCHYFNKGFCKHGSNCRYYHG 205
+ N+ K C YF++GFCK+GS CR+ HG
Sbjct: 163 DNGSHKRSFSVPDTCVGSEDSNSGFGWKPCLYFSRGFCKNGSGCRFVHG 211
>gi|242082672|ref|XP_002441761.1| hypothetical protein SORBIDRAFT_08g001980 [Sorghum bicolor]
gi|241942454|gb|EES15599.1| hypothetical protein SORBIDRAFT_08g001980 [Sorghum bicolor]
Length = 637
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 113/181 (62%), Gaps = 24/181 (13%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G +++ +RQIYLTFPA+STF+E+DVSNYF+ YGPV DVRIP QQKRMFGFV
Sbjct: 282 RSPRMDRGELMSSPAARQIYLTFPADSTFSEEDVSNYFSMYGPVQDVRIPYQQKRMFGFV 341
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR--KYQER-------------- 426
TF A+TVK+IL+KGNPHFVC ARVLVKPY+EK K+ DR K Q
Sbjct: 342 TFVYAETVKIILSKGNPHFVCDARVLVKPYKEKGKVPDRFRKLQHPHHGDFAGCTSPTGL 401
Query: 427 MESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLE-----EQEQAFELERRRLAELQL 481
++S F Q + + + F+R++L E E +QA ELE RR L L
Sbjct: 402 LDSRDPFDLQQPQIGPRM-MYGNIANHEAFLRRKLEEQHQAAELQQAIELEGRRFMGLHL 460
Query: 482 V 482
+
Sbjct: 461 L 461
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 44/218 (20%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T+ VF+R++ LDP+N +KI+G LL+Q ++E+I LA PD ++ V A+A+
Sbjct: 1 MDAWEATKAVFDRVRALDPDNASKIMGLLLIQDNSDKELIRLAFGPDHLLHAFVAAARAD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L + ++ + P+++ P SP G PS HQ + ++
Sbjct: 61 LAASSKPASP---PSPVLGPLHQ------------PASPWG-PPPSDHHHQHQSPFSAAD 104
Query: 118 VALGYS-DSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQS 176
ALGY D + F D Y D GA A RR S
Sbjct: 105 HALGYDYDGAAAAAAPAS--------------ADAFFPDDY--DCWSPAGGATAHRRSFS 148
Query: 177 L-NAELPV-------KTCHYFNKGFCKHGSNCRYYHGL 206
L +AE+ + C YF +GFCK+GS+CR+ HGL
Sbjct: 149 LSDAEVAGAAGAGAWRPCMYFARGFCKNGSSCRFLHGL 186
>gi|414882095|tpg|DAA59226.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 379
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 84/99 (84%), Gaps = 2/99 (2%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G +++ +RQIYLTFPA+STF+E+DVSNYF+ YGPV DVRIP QQKRMFGFV
Sbjct: 16 RSPRMDRGELMSSPAARQIYLTFPADSTFSEEDVSNYFSMYGPVQDVRIPYQQKRMFGFV 75
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
TF A+TVK+IL+KGNPHFVC ARVLVKPY+EK K+ DR
Sbjct: 76 TFVYAETVKIILSKGNPHFVCDARVLVKPYKEKGKVPDR 114
>gi|240255377|ref|NP_188747.5| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332642939|gb|AEE76460.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 296
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 108/159 (67%), Gaps = 15/159 (9%)
Query: 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILA 395
+ S+QIYLTFPA+S+FT++DVSNYF +GPV DVRIP QQKRMFGFVTF ++TV++ILA
Sbjct: 9 SASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILA 68
Query: 396 KGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMY-------FSPQYVD----MDSEL 444
+GNPHF+C +RVLVKPY+EK ++++++ Q+++ M SP +D DS L
Sbjct: 69 RGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRDLFDSHL 128
Query: 445 --HSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQL 481
FS E R RK + +QA E +RRR LQL
Sbjct: 129 APRMFSNTQEMMR--RKAEQADLQQAIEFQRRRFLSLQL 165
>gi|414882092|tpg|DAA59223.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 630
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 84/99 (84%), Gaps = 2/99 (2%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G +++ +RQIYLTFPA+STF+E+DVSNYF+ YGPV DVRIP QQKRMFGFV
Sbjct: 266 RSPRMDRGELMSSPAARQIYLTFPADSTFSEEDVSNYFSMYGPVQDVRIPYQQKRMFGFV 325
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
TF A+TVK+IL+KGNPHFVC ARVLVKPY+EK K+ DR
Sbjct: 326 TFVYAETVKIILSKGNPHFVCDARVLVKPYKEKGKVPDR 364
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 55/220 (25%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T+ VF+R++ LDP+N +KI+G LL+Q ++E+I LA PD ++ V A+A+
Sbjct: 1 MDAWEATKAVFDRVRALDPDNASKIMGLLLIQDNSDKELIRLAFGPDHLLHAFVSAARAD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LA K AS P SP + P+++ + + P SP DHQ +D
Sbjct: 61 ---LAAKPASPP-SPVLG-PLHQT------WGAPPHPSPTAGS-----DHQHQAPFAAD- 103
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSD--AALSNLGARAGRRYQ 175
+ALGY + G +D ++ D S GA A RR
Sbjct: 104 LALGY-----------------------DFDGAGAGADAFFPDDYDCWSPAGA-AHRRSF 139
Query: 176 SLN---------AELPVKTCHYFNKGFCKHGSNCRYYHGL 206
SL+ + C YF +GFCK+GS+CR+ HG
Sbjct: 140 SLSDAEATAAAAGGAAWRPCMYFARGFCKNGSSCRFLHGF 179
>gi|414882093|tpg|DAA59224.1| TPA: putative RNA-binding zinc finger family protein isoform 1 [Zea
mays]
gi|414882094|tpg|DAA59225.1| TPA: putative RNA-binding zinc finger family protein isoform 2 [Zea
mays]
Length = 629
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 84/99 (84%), Gaps = 2/99 (2%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G +++ +RQIYLTFPA+STF+E+DVSNYF+ YGPV DVRIP QQKRMFGFV
Sbjct: 266 RSPRMDRGELMSSPAARQIYLTFPADSTFSEEDVSNYFSMYGPVQDVRIPYQQKRMFGFV 325
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
TF A+TVK+IL+KGNPHFVC ARVLVKPY+EK K+ DR
Sbjct: 326 TFVYAETVKIILSKGNPHFVCDARVLVKPYKEKGKVPDR 364
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 55/220 (25%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T+ VF+R++ LDP+N +KI+G LL+Q ++E+I LA PD ++ V A+A+
Sbjct: 1 MDAWEATKAVFDRVRALDPDNASKIMGLLLIQDNSDKELIRLAFGPDHLLHAFVSAARAD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LA K AS P SP + P+++ + + P SP DHQ +D
Sbjct: 61 ---LAAKPASPP-SPVLG-PLHQT------WGAPPHPSPTAGS-----DHQHQAPFAAD- 103
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSD--AALSNLGARAGRRYQ 175
+ALGY + G +D ++ D S GA A RR
Sbjct: 104 LALGY-----------------------DFDGAGAGADAFFPDDYDCWSPAGA-AHRRSF 139
Query: 176 SLN---------AELPVKTCHYFNKGFCKHGSNCRYYHGL 206
SL+ + C YF +GFCK+GS+CR+ HG
Sbjct: 140 SLSDAEATAAAAGGAAWRPCMYFARGFCKNGSSCRFLHGF 179
>gi|413924733|gb|AFW64665.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 697
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 87/112 (77%), Gaps = 2/112 (1%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G ++ +RQIYLTFPA+STF+E+DVSNYF+ +GPV DVRIP QQKRMFGFV
Sbjct: 253 RSPRMDRGDLIGSPAARQIYLTFPADSTFSEEDVSNYFSMFGPVQDVRIPYQQKRMFGFV 312
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFS 434
TF A+TVK IL+KGNPHFVC ARVLVKPY+EK K+ DR SP++ +
Sbjct: 313 TFVYAETVKAILSKGNPHFVCDARVLVKPYKEKGKVPDRFRSVLPSSPLHIA 364
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 49/215 (22%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+R++ LDPEN +K++G LL+Q+ +E+I LA P+ ++ V A+AE
Sbjct: 1 MDAWEATKVVFDRVRALDPENASKMMGLLLIQDNSDKELIRLAFGPEHLLHSFVATARAE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LA K AS P SPV P S P + + ++S F
Sbjct: 61 ---LAAKPASPP------SPV------LGPLQSGAPWGLPSPGSGAGGGGGGDHHHHSPF 105
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDA--ALSNLGAR-AGRRY 174
A DQ LG G +D +Y+D S GA A RR
Sbjct: 106 AA-------------------ADQ-----LGYDG-GADAFYADEYDCWSPAGAAGAHRRS 140
Query: 175 QSLN---AELPVKTCHYFNKGFCKHGSNCRYYHGL 206
SL+ A + C Y+ +G+CK+GS+CR+ HG+
Sbjct: 141 FSLSDAEAAASWRPCMYYARGYCKNGSSCRFLHGV 175
>gi|242069801|ref|XP_002450177.1| hypothetical protein SORBIDRAFT_05g001540 [Sorghum bicolor]
gi|241936020|gb|EES09165.1| hypothetical protein SORBIDRAFT_05g001540 [Sorghum bicolor]
Length = 612
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 89/112 (79%), Gaps = 3/112 (2%)
Query: 312 VILAEDAPKYLENRNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
V+ ED ++ R+ R D G ++ +RQIYLTFPA+STF+E+DVSNYF+ +GPV DV
Sbjct: 221 VLGGEDMHRF-PVRSPRMDRGDLIGSPAARQIYLTFPADSTFSEEDVSNYFSMFGPVQDV 279
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
RIP QQKRMFGFVTF A+TVK++L+KGNPHFVC ARVLVKPY+EK K+ DR
Sbjct: 280 RIPYQQKRMFGFVTFVYAETVKVLLSKGNPHFVCDARVLVKPYKEKGKVPDR 331
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 52/215 (24%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+R+++LDPEN ++++G LL+Q ++E+I LA PD ++ V A+AE
Sbjct: 1 MDAWEATKVVFDRVRELDPENASRMMGLLLIQDNSDKELIRLAFGPDHLLHAFVATARAE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVS-PAGCRVPSYWDHQVTNKNNSD 116
L A +SP SP + P + PP P+ + HQ +S
Sbjct: 61 LA--ANGKPASPPSPVL-----------GPLQTGPPWGLPSPGAGADHHHHQ-----HSP 102
Query: 117 FV--ALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
F LGY + + S G R +
Sbjct: 103 FADHQLGYDGAAADAFYAD-------------------------DYDVWSPAGGAHCRSF 137
Query: 175 QSLNAELPV---KTCHYFNKGFCKHGSNCRYYHGL 206
+AE + C Y+ +G+CK+GS+CR+ HG+
Sbjct: 138 SLSDAEAAAASWRPCMYYARGYCKNGSSCRFLHGV 172
>gi|334186234|ref|NP_001190170.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332646964|gb|AEE80485.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 406
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 109/173 (63%), Gaps = 15/173 (8%)
Query: 311 AVILAEDAPKYLENRNERSD-PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
A+++ +D K R ER D SRQIYLTFPA+S F E+DVS+YF+T+GPV DV
Sbjct: 126 ALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDV 185
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
RIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY+ +
Sbjct: 186 RIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPD-KYRTK--- 241
Query: 430 PMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLV 482
P MD +L R +++ +E+A EL+ RL LQL+
Sbjct: 242 -----PSRDIMDFQLG--GRAFHEDLLWKRRF---EERALELQSTRLMNLQLL 284
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDP N +KIIG LLLQ E+EMI LA P ++ V+ KAK +
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 58 LQQ 60
L++
Sbjct: 61 LEE 63
>gi|7573328|emb|CAB87798.1| putative protein [Arabidopsis thaliana]
Length = 399
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 108/173 (62%), Gaps = 22/173 (12%)
Query: 311 AVILAEDAPKYLENRNERSD-PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
A+++ +D K R ER D SRQIYLTFPA+S F E+DVS+YF+T+GPV DV
Sbjct: 126 ALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDV 185
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
RIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY+ +
Sbjct: 186 RIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPD-KYRTK--- 241
Query: 430 PMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLV 482
P MD +L + RF +E+A EL+ RL LQL+
Sbjct: 242 -----PSRDIMDFQLDLLWK----RRF--------EERALELQSTRLMNLQLL 277
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDP N +KIIG LLLQ E+EMI LA P ++ V+ KAK +
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 58 LQQ 60
L++
Sbjct: 61 LEE 63
>gi|79316196|ref|NP_001030921.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|79456990|ref|NP_191904.2| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|46518429|gb|AAS99696.1| At3g63450 [Arabidopsis thaliana]
gi|332646962|gb|AEE80483.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332646963|gb|AEE80484.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 404
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 107/176 (60%), Gaps = 23/176 (13%)
Query: 311 AVILAEDAPKYLENRNERSD-PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
A+++ +D K R ER D SRQIYLTFPA+S F E+DVS+YF+T+GPV DV
Sbjct: 126 ALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDV 185
Query: 370 RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
RIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D+ R
Sbjct: 186 RIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKPSR--- 242
Query: 430 PMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEE---QEQAFELERRRLAELQLV 482
++ F G R + LL + +E+A EL+ RL LQL+
Sbjct: 243 -------------DIMDFQLG---GRAFHEDLLWKRRFEERALELQSTRLMNLQLL 282
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDP N +KIIG LLLQ E+EMI LA P ++ V+ KAK +
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 58 LQQ 60
L++
Sbjct: 61 LEE 63
>gi|357161178|ref|XP_003579005.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
[Brachypodium distachyon]
Length = 612
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 76/84 (90%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFPA+STF+E+DVS+YF+ YGPV DVRIP QQKRMFGFVTF A+TV++ILAKG
Sbjct: 254 ARQIYLTFPADSTFSEEDVSSYFSMYGPVQDVRIPYQQKRMFGFVTFVYAETVRLILAKG 313
Query: 398 NPHFVCGARVLVKPYREKSKLVDR 421
NPHFVC ARVLVKPY+EK K+ DR
Sbjct: 314 NPHFVCDARVLVKPYKEKGKVPDR 337
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF R++ LDPE +KI+G LL+Q E++MI LA P+ ++ VV +A+A+
Sbjct: 1 MDAYEATKVVFARVQALDPELASKIMGMLLVQDRSEEDMIRLAFGPEHLLHTVVARARAD 60
Query: 58 L 58
+
Sbjct: 61 I 61
>gi|212722294|ref|NP_001131248.1| uncharacterized protein LOC100192560 [Zea mays]
gi|195656461|gb|ACG47698.1| nucleic acid binding protein [Zea mays]
Length = 629
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 83/99 (83%), Gaps = 2/99 (2%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G +++ +RQIYLTFPA+STF+E+DVS YF+ YGPV DVRIP QQKRMFGFV
Sbjct: 266 RSPRMDRGELMSSPAARQIYLTFPADSTFSEEDVSIYFSMYGPVQDVRIPYQQKRMFGFV 325
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
TF A+TVK+IL+KGNPHFVC ARVLVKPY+EK K+ DR
Sbjct: 326 TFVYAETVKIILSKGNPHFVCDARVLVKPYKEKGKVPDR 364
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 55/220 (25%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T+ VF+R++ LDP+N +KI+G LL+Q ++E+I LA PD ++ V A+A+
Sbjct: 1 MDAWEATKAVFDRVRALDPDNASKIMGLLLIQDNSDKELIRLAFGPDHLLHAFVSAARAD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LA K AS P SP + P+++ + + P SP DHQ +D
Sbjct: 61 ---LAAKPASPP-SPVLG-PLHQT------WGAPPHPSPTAGS-----DHQHQAPFAAD- 103
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSD--AALSNLGARAGRRYQ 175
+ALGY + G +D ++ D S GA A RR
Sbjct: 104 LALGY-----------------------DFDGAGAGADAFFPDDYDCWSPAGA-AHRRSF 139
Query: 176 SLN---------AELPVKTCHYFNKGFCKHGSNCRYYHGL 206
SL+ + C YF +GFCK+GS+CR+ HG
Sbjct: 140 SLSDAEATAAAAGGAAWRPCMYFARGFCKNGSSCRFLHGF 179
>gi|110738379|dbj|BAF01116.1| hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 107/160 (66%), Gaps = 16/160 (10%)
Query: 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILA 395
+ S+QIYLTFPA+S+FT++DVSNYF +GPV DVRIP QQKRMFGFVTF ++TV++ILA
Sbjct: 9 SASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILA 68
Query: 396 KGNPHFVCGARVLVKPYREKSKLVD-RKYQERMESPMY---FSPQYVD--------MDSE 443
+GNPHF+C +RVLVKPY+EK ++++ R+ Q+++ M FSP DS
Sbjct: 69 RGNPHFICDSRVLVKPYKEKGRILENRRQQQQLLQQMERGNFSPGSSPSGMGSRDLFDSH 128
Query: 444 L--HSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQL 481
L FS E R RK + +QA E +RRR LQL
Sbjct: 129 LAPRMFSNTQEMMR--RKAEQADLQQAIEFQRRRFLSLQL 166
>gi|326491203|dbj|BAK05701.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 79/89 (88%), Gaps = 2/89 (2%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFPA+STF+E+DVS+YF+ YGPV DVRIP QQKRMFGFVTF A+TV++ILAKG
Sbjct: 252 ARQIYLTFPADSTFSEEDVSSYFSYYGPVQDVRIPYQQKRMFGFVTFVYAETVRLILAKG 311
Query: 398 NPHFVCGARVLVKPYREKSKLVD--RKYQ 424
NPHFVC ARVLVKPY+EK K+ D RK+Q
Sbjct: 312 NPHFVCDARVLVKPYKEKGKVPDRFRKFQ 340
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 58/212 (27%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF R++ L P+ +KI+G LL+Q E++MI LA P+ ++Q VV +A+A+
Sbjct: 1 MDAYEATKVVFARVQALHPDLASKIMGMLLIQDKSEEDMIRLAFGPEHLLQGVVARARAD 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
L A + SP + S + +S + PF P V
Sbjct: 61 LAAAAHHNKPSPPAASWGA---GLSAEDAPF---PGV----------------------- 91
Query: 118 VALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSL 177
D + +G GF + Y + ++ G + R +
Sbjct: 92 ----------------------DHARYEGVGGEGFYAPEEYGCWSPAS-GGQHRRSFSLS 128
Query: 178 NAELPV---KTCHYFNKGFCKHGSNCRYYHGL 206
+AE K C Y+ +GFCK+GS+CR+ HGL
Sbjct: 129 DAEAAAGGWKPCMYYARGFCKNGSSCRFVHGL 160
>gi|297821268|ref|XP_002878517.1| hypothetical protein ARALYDRAFT_486853 [Arabidopsis lyrata subsp.
lyrata]
gi|297324355|gb|EFH54776.1| hypothetical protein ARALYDRAFT_486853 [Arabidopsis lyrata subsp.
lyrata]
Length = 414
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 109/177 (61%), Gaps = 21/177 (11%)
Query: 311 AVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNT----YGP 365
A+++ +D K R ER D + SRQIYLTFPA+S F E+DVS+YF+ +GP
Sbjct: 133 ALMMGDDLHKLGRWRPERIDLSAMACPASRQIYLTFPADSIFREEDVSDYFSMVVQYFGP 192
Query: 366 VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQE 425
V DVRIP QQKRMFGFVTF DTVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY++
Sbjct: 193 VQDVRIPFQQKRMFGFVTFMYPDTVKSILAKGNPHFVCDSRVLVKPYKEKGKVPD-KYRD 251
Query: 426 RMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLV 482
MD +L + T + K+ E E+A EL+ RL LQL+
Sbjct: 252 I-------------MDFQLGGRAFHDNTQDLLWKRRFE--ERALELQSTRLMNLQLL 293
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TR+V +RI+ LDP N +KI+G LLLQ E+EMI LA P ++ V+ KAK +
Sbjct: 1 MDVYEATRVVLSRIQSLDPANASKIMGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 58 LQQ 60
L +
Sbjct: 61 LDE 63
>gi|224104195|ref|XP_002313354.1| predicted protein [Populus trichocarpa]
gi|222849762|gb|EEE87309.1| predicted protein [Populus trichocarpa]
Length = 446
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 11/157 (7%)
Query: 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILA 395
+ SRQIYLTFPA+S+F ++DVSNYF ++GPV DVRIP QQKRMFGFVTF +TVK ILA
Sbjct: 141 SASRQIYLTFPADSSFKDEDVSNYFCSFGPVQDVRIPYQQKRMFGFVTFVHPETVKEILA 200
Query: 396 KGNPHFVCGARVLVKPYREKSKLVDR----KYQERMESPMYFSPQYVDMDS-ELHSFSRG 450
KGNPH++C +RVLVKPY+EK K+ ++ Y + + Q + ++S + + R
Sbjct: 201 KGNPHYICESRVLVKPYKEKGKVANKYGCNSYLRGGIFHLLQALQVLILESYVIFTLVRA 260
Query: 451 ---CETSRFIRKQLLEEQ---EQAFELERRRLAELQL 481
T + ++ LEEQ +QA EL+ RRL LQL
Sbjct: 261 RMLYNTPEIMLRRKLEEQAELQQAIELQGRRLINLQL 297
>gi|30695000|ref|NP_849792.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332194556|gb|AEE32677.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 513
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 91/122 (74%), Gaps = 6/122 (4%)
Query: 307 HGQHAVILAEDAPKYL-ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGP 365
H + E+ Y + R+ER D + S+QIYLTFP+ES+FT++DVS YF +G
Sbjct: 238 HRHGSGHFGEECGNYFSQGRHERED-----SVSKQIYLTFPSESSFTDEDVSTYFRDFGL 292
Query: 366 VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQE 425
VDDVRIP QQ+RM+GFVTFA A+TV+ ILA+GNPHF+C +RVLVKPY+EK K++ ++ Q+
Sbjct: 293 VDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQ 352
Query: 426 RM 427
++
Sbjct: 353 QL 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQE---MIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F++I+ + EN +++I Y LLQ+ E +I +A PD +IQ KAK +
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 58 LQQLAMKSASSPI-----SPSMNSPVNE-VSFQFNP 87
L + S PI S S +SP N + F NP
Sbjct: 61 L-GFSSNGFSRPINIHGQSLSSSSPRNGFLEFSRNP 95
>gi|15217946|ref|NP_175563.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|12325355|gb|AAG52614.1|AC024261_1 unknown protein; 33958-32214 [Arabidopsis thaliana]
gi|20268750|gb|AAM14078.1| unknown protein [Arabidopsis thaliana]
gi|21281143|gb|AAM45048.1| unknown protein [Arabidopsis thaliana]
gi|332194555|gb|AEE32676.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 414
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 89/115 (77%), Gaps = 6/115 (5%)
Query: 314 LAEDAPKYL-ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP 372
E+ Y + R+ER D + S+QIYLTFP+ES+FT++DVS YF +G VDDVRIP
Sbjct: 245 FGEECGNYFSQGRHERED-----SVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIP 299
Query: 373 CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERM 427
QQ+RM+GFVTFA A+TV+ ILA+GNPHF+C +RVLVKPY+EK K++ ++ Q+++
Sbjct: 300 YQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQL 354
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQE---MIHLAMSPDVVIQEVVYKAKAE 57
MD + T I+F++I+ + EN +++I Y LLQ+ E +I +A PD +IQ KAK +
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 58 LQQLAMKSASSPI-----SPSMNSPVNE-VSFQFNP 87
L + S PI S S +SP N + F NP
Sbjct: 61 L-GFSSNGFSRPINIHGQSLSSSSPRNGFLEFSRNP 95
>gi|414887325|tpg|DAA63339.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 439
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 217/451 (48%), Gaps = 66/451 (14%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E + ++++ L P+N I+ Y++ E +L + D V+ + ++
Sbjct: 1 MDIEECRTRLQDKVRLLHPKNAEGIVDYMIANTPLENIRSYLLTATDNVLMNL-FEGANR 59
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNSDF 117
LQ + S N P+ + F PF P HQ +++N+S
Sbjct: 60 LQNILNLSEE-------NEPLFGL---FTPFDQIGPQK----------QHQFSSRNHSQV 99
Query: 118 VA-----LGYSDSINELQSQTQFLSLEDQMEHVNL--GNTGFSSDCYYSDAALSNLGARA 170
+ +G S + S+ D + +++ G+T C A N+G
Sbjct: 100 LQAPLYPIGPSGAFQNPYSK--LTGFRDHFQSLSILDGDTPSHYKC-----ASINVGG-- 150
Query: 171 GRRYQSLNAELPVKTCH-YFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLF 229
Y S N ++ KTC Y + CK+G NC + S + + + D DHL
Sbjct: 151 ---YPS-NGKVQTKTCRFYLSIRKCKYGENCHF-------SLVCGYPEIN-DMRQVDHL- 197
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
GSL+ LE+EI +LL + + + + L + E Y K+L+ G+ TE QR+ K GY L
Sbjct: 198 --GSLQMLEMEI-DLLLLQPSSQVPVDHLEKKFLEIYTKLLEIDGFHTEDQRNRKTGYGL 254
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGS--RQIYLTFPA 347
T L +L N+ R +R G++ V+L +DAPKY+ + + + P + GS +I +TF +
Sbjct: 255 TDLFMQL-NATRETER-RGRYYVVLVKDAPKYVTHGFQPAVP---LAGSDFNKICVTFKS 309
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
ES FT DV NYF+ YG V + R +++ M G V+F +T K I+++ PHF+CG V
Sbjct: 310 ESIFTHTDVQNYFSQYGTVSEERFS-EERHMHGHVSFVDLETAKRIISESGPHFICGNEV 368
Query: 408 LVKPYREKSKLVDRKYQERMESPMYFSPQYV 438
K YREK +L R+ + + P+ +P+Y+
Sbjct: 369 RAKAYREKHELNFRQGRHNV-VPVEDAPKYM 398
>gi|222615430|gb|EEE51562.1| hypothetical protein OsJ_32780 [Oryza sativa Japonica Group]
Length = 400
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFP +S F+++DV NYF+ YG V DVRIP Q+KRMFGFVTFA TVK+ILAKG
Sbjct: 166 ARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKRMFGFVTFAYQKTVKLILAKG 225
Query: 398 NPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFS 434
NPH++C ARVLVKPY+EK K+ ++K+Q+ +SP Y +
Sbjct: 226 NPHYICDARVLVKPYKEKDKVPNKKFQQS-DSPSYMN 261
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
M E+T++VF R++ L+P IIG LL + E +MIHLA PD ++Q ++ K + +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDKNEMDMIHLACGPDNLLQSIIAKVRTD 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|77548504|gb|ABA91301.1| RNA recognition motif, putative [Oryza sativa Japonica Group]
Length = 401
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFP +S F+++DV NYF+ YG V DVRIP Q+KRMFGFVTFA TVK+ILAKG
Sbjct: 166 ARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKRMFGFVTFAYQKTVKLILAKG 225
Query: 398 NPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFS 434
NPH++C ARVLVKPY+EK K+ ++K+Q+ +SP Y +
Sbjct: 226 NPHYICDARVLVKPYKEKDKVPNKKFQQS-DSPSYMN 261
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
M E+T++VF R++ L+P IIG LL + E +MIHLA PD ++Q ++ K + +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDKNEMDMIHLACGPDNLLQSIIAKVRTD 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|242050694|ref|XP_002463091.1| hypothetical protein SORBIDRAFT_02g037630 [Sorghum bicolor]
gi|241926468|gb|EER99612.1| hypothetical protein SORBIDRAFT_02g037630 [Sorghum bicolor]
Length = 211
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 3/155 (1%)
Query: 264 EKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLE 323
++YGK L+ G + + Q+ GKAG SLT +L RL N+ R+I+R G ++ EDAP YL
Sbjct: 2 DRYGKPLRNEGLIIDGQQQGKAGCSLTDVLMRL-NTTRVIER-KGHQYIVPVEDAPMYLA 59
Query: 324 NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVT 383
+ + P + S QI++ F S FTE+DV +YF+ YG V +VRIP Q KRM+GFV+
Sbjct: 60 HAFKLG-MSPASSNSNQIFVVFMPGSKFTEEDVHSYFSQYGTVSNVRIPPQGKRMYGFVS 118
Query: 384 FASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F T + IL++ PHF+CG RV VK Y++K +L
Sbjct: 119 FQDPGTAERILSERTPHFICGDRVCVKAYKDKDEL 153
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 7/59 (11%)
Query: 360 FNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG---NPHFVCGARVLVKPYREK 415
+ YGPV+DVR +KRMFG+V+F +TVK IL++ HF+CG V V+PYREK
Sbjct: 153 LDHYGPVNDVR----KKRMFGYVSFKHPETVKRILSERCLRTSHFICGDHVFVEPYREK 207
>gi|218185150|gb|EEC67577.1| hypothetical protein OsI_34930 [Oryza sativa Indica Group]
Length = 581
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 70/84 (83%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFP +S F+++DV NYF+ YG V DVRIP Q+KRMFGFVTF TVK+ILAKG
Sbjct: 317 ARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKRMFGFVTFTYQKTVKLILAKG 376
Query: 398 NPHFVCGARVLVKPYREKSKLVDR 421
NPH++C ARVLVKPY+EK K+ ++
Sbjct: 377 NPHYICDARVLVKPYKEKDKVPNK 400
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
M E+T++VF R++ L+P IIG LL + E +MIHLA PD ++Q ++ K + +
Sbjct: 152 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDNNEMDMIHLACGPDNLLQSIIAKVRTD 211
Query: 58 L 58
L
Sbjct: 212 L 212
>gi|77552901|gb|ABA95697.1| RNA recognition motif, putative, expressed [Oryza sativa Japonica
Group]
Length = 480
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 9/152 (5%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFP +S F+++DV NYF+ YG V DVRIP Q+K MFGFVTFA TVK+ILAKG
Sbjct: 166 ARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKCMFGFVTFAYQKTVKLILAKG 225
Query: 398 NPHFVCGARVLVKPYREKSKLVDR-KYQERMESPMYFSPQ------YVDMDSELHSFSRG 450
NPH++C ARVLVKPY+EK K+ ++ ++ P+ Y+ + +
Sbjct: 226 NPHYICDARVLVKPYKEKDKVPNKFRHVNHCLIPLRIFAHILPFECYIVLGPRILYRDIA 285
Query: 451 CETSRFIRKQLLEEQEQAFELERRRLAELQLV 482
+ F KQ +EQ+ A EL+R L L L+
Sbjct: 286 SHEASFRMKQ--DEQQHATELQRCCLMRLPLL 315
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
M E+T++VF R++ L+P IIG LL + E +MI LA PD ++Q ++ K + +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTD 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|222616541|gb|EEE52673.1| hypothetical protein OsJ_35055 [Oryza sativa Japonica Group]
Length = 430
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 70/84 (83%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFP +S F+++DV NYF+ YG V DVRIP Q+K MFGFVTFA TVK+ILAKG
Sbjct: 166 ARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKCMFGFVTFAYQKTVKLILAKG 225
Query: 398 NPHFVCGARVLVKPYREKSKLVDR 421
NPH++C ARVLVKPY+EK K+ ++
Sbjct: 226 NPHYICDARVLVKPYKEKDKVPNK 249
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
M E+T++VF R++ L+P IIG LL + E +MI LA PD ++Q ++ K + +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTD 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|218186344|gb|EEC68771.1| hypothetical protein OsI_37303 [Oryza sativa Indica Group]
Length = 430
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 70/84 (83%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+RQIYLTFP +S F+++DV NYF+ YG V DVRIP Q+K MFGFVTFA TVK+ILAKG
Sbjct: 166 ARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKCMFGFVTFAYQKTVKLILAKG 225
Query: 398 NPHFVCGARVLVKPYREKSKLVDR 421
NPH++C ARVLVKPY+EK K+ ++
Sbjct: 226 NPHYICDARVLVKPYKEKDKVPNK 249
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
M E+T++VF R++ L+P IIG LL + E +MI LA PD ++Q ++ K + +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTD 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|224068835|ref|XP_002302837.1| predicted protein [Populus trichocarpa]
gi|224147115|ref|XP_002336411.1| predicted protein [Populus trichocarpa]
gi|222834932|gb|EEE73381.1| predicted protein [Populus trichocarpa]
gi|222844563|gb|EEE82110.1| predicted protein [Populus trichocarpa]
Length = 140
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Query: 427 MESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELERRRLAELQLVRKPM 486
M+ P+Y S ++D DSELHS R C+ S+ +RKQ +EE EQ ELERRRL+E KP+
Sbjct: 1 MQHPIYHSHHFMDGDSELHSALRVCDNSKSLRKQFMEEHEQEIELERRRLSEFHFSPKPL 60
Query: 487 PNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNYTDQES-EG 545
+ G MD LK+S ++ F SAE +Y VLNNGST+ ++ +H T+ +DQ+S +G
Sbjct: 61 NRHSFLGHSMDELKLSGEQAEFSSAEHFNYWFDVLNNGSTSEEKHRHTRTSCSDQDSNQG 120
Query: 546 LNLPDSPFANPIASGISTV 564
+NLP+SPFA+ I SGISTV
Sbjct: 121 VNLPESPFASAIGSGISTV 139
>gi|357116531|ref|XP_003560034.1| PREDICTED: putative zinc finger CCCH domain-containing protein
51-like [Brachypodium distachyon]
Length = 522
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 131/270 (48%), Gaps = 66/270 (24%)
Query: 162 ALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPD 221
SN+ R + L A +P + Y + G CK G +CR+ HG
Sbjct: 110 GCSNVTGCPASRSEQL-ANIPCR--FYMSTGVCKKGWSCRFSHGF--------------- 151
Query: 222 GFNDDHLFSPGSLEKLELEIIELLKARRGNPIS-IASLPMLYYEKYGKVLQAGGYLTESQ 280
G L LE+ I ELL R P++ +A LP +Y Y + LQ G+ +S
Sbjct: 152 ----------GPLGMLEMAIRELLMNR---PLTRVADLP-VYLACYKQPLQ--GWWNQST 195
Query: 281 RHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIV----- 335
S+ LLARL ++DR GQ+ ++L E AP YL GP V
Sbjct: 196 G------SIISLLARLHTVTLIVDR-MGQNFIVLLEHAPSYL---------GPAVNLNVM 239
Query: 336 ---TGSRQIYLTFPAE--STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTV 390
+G +IY+TF AE + TE VSNYF+ YGPV VR+P R+ GFVTF TV
Sbjct: 240 DTGSGFNKIYITFTAEGRARCTESLVSNYFSQYGPVLKVRMP--TPRLCGFVTFQYPQTV 297
Query: 391 KMILAKGNP---HFVCGARVLVKPYREKSK 417
+++L + NP HF+CGA VLVKPY+ +
Sbjct: 298 ELLLFEWNPQVPHFICGATVLVKPYKHSGE 327
>gi|414866610|tpg|DAA45167.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 292
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 114/231 (49%), Gaps = 32/231 (13%)
Query: 361 NTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD 420
+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D
Sbjct: 4 SIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD 63
Query: 421 RKYQERMESPMYFSPQYVDMDS----ELHSFS-----RGCETSRFIRKQLLEEQEQ---- 467
+ +++ + +D+ +LH + + ++ LEEQ+Q
Sbjct: 64 KYRKQQQGDFSGCTTPTGGLDARDPFDLHQLGARMLQHSNSANELLLRRKLEEQQQAAEL 123
Query: 468 --AFELERRRLAELQLV---------RKPMPNPPYFGGYMDGLKISEDRLNFP--SAERI 514
A EL+ RRL LQL+ +P P + +S + P S E++
Sbjct: 124 QHAIELQSRRLMGLQLLDLKARAAATASALPT-PIANAFASSHPLSTMAVESPLESGEQL 182
Query: 515 DY-----LIGVLNNGSTTGDRVKHVETNYTDQESEGLNLPDSPFANPIASG 560
L G LN G + +S NLPDSPFA+P S
Sbjct: 183 KLSSGFALDGKLNGGDKEESACEASPDAADSDQSGEHNLPDSPFASPTKSA 233
>gi|218192754|gb|EEC75181.1| hypothetical protein OsI_11409 [Oryza sativa Indica Group]
Length = 221
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 82/133 (61%), Gaps = 15/133 (11%)
Query: 363 YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRK 422
YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+K
Sbjct: 8 YGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKK 67
Query: 423 YQERMESPMYFSPQYVDMDS--ELHSF-SRGCETSRFIRKQLLEEQ----------EQAF 469
+Q +P +D +LH +R + S + +L + +QA
Sbjct: 68 HQGDFSG--CTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAI 125
Query: 470 ELERRRLAELQLV 482
EL RRL +LQL+
Sbjct: 126 ELHSRRLMDLQLL 138
>gi|414873767|tpg|DAA52324.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 485
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 66/99 (66%), Gaps = 16/99 (16%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFV 382
R+ R D G ++ +RQI VSNYF+ +GPV DVRIP QQK MFGFV
Sbjct: 357 RSPRMDRGDLICSPAARQI--------------VSNYFSMFGPVQDVRIPYQQKHMFGFV 402
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
TF A+TVK+I +KGNPHFVC ARVLVKPY+EK K+ R
Sbjct: 403 TFVYAETVKVIPSKGNPHFVCYARVLVKPYKEKGKIPGR 441
>gi|212275268|ref|NP_001130674.1| uncharacterized protein LOC100191777 [Zea mays]
gi|194689800|gb|ACF78984.1| unknown [Zea mays]
Length = 259
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 102/201 (50%), Gaps = 33/201 (16%)
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQERMESPMYFSP 435
MFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D RK Q + E + F
Sbjct: 1 MFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQLQGERAVDFFS 60
Query: 436 QYVDMDS---ELHSF-SRGCETSRFIRKQLLEEQ------------EQAFELERRRLAEL 479
+D +LH +R + S + LL + +QA EL+ RRL L
Sbjct: 61 NGLDGRENHLDLHQLGARMLQHSHSANEMLLRRKLEEQQQAAAAELQQAMELQSRRLMRL 120
Query: 480 QLVR-KPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDRVKHVETNY 538
QL+ KP +P G G P+ +D S+ GD + +
Sbjct: 121 QLLDLKPRASPSPIGSMPLG----------PTQRAVDSPPDSGREESSAGDASPNAD--- 167
Query: 539 TDQESEGLNLPDSPFANPIAS 559
+DQ +E NLPDSPFA+P S
Sbjct: 168 SDQSAEH-NLPDSPFASPTRS 187
>gi|413922880|gb|AFW62812.1| putative cytochrome P450 superfamily protein [Zea mays]
Length = 944
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 48/56 (85%)
Query: 366 VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDR 421
+ DVRIP QQKRMFGFVTF A+TVK+IL+KGNPHFVC ARVLVKPY+EK K+ R
Sbjct: 636 LQDVRIPYQQKRMFGFVTFVYAETVKVILSKGNPHFVCDARVLVKPYKEKGKVPGR 691
>gi|242050692|ref|XP_002463090.1| hypothetical protein SORBIDRAFT_02g037623 [Sorghum bicolor]
gi|241926467|gb|EER99611.1| hypothetical protein SORBIDRAFT_02g037623 [Sorghum bicolor]
Length = 250
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 233 SLEKLEL---EIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAG-YS 288
SLE+L L EI +LL +++ + + I LPM+Y+ KYGK L + E Q+ G+ G YS
Sbjct: 53 SLERLPLLGEEIRQLLISQQPSVVPIEHLPMIYFAKYGKSLFVTDFKPEVQQLGEKGSYS 112
Query: 289 LTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT--GSRQ---IYL 343
L LL RL +++++I+R HGQ L DA LE+ +D ++ +R IY+
Sbjct: 113 LICLLMRL-DTIKVIERFHGQQCAALGGDA---LESSGSAADSKLVLAPPNTRHIVTIYI 168
Query: 344 TFPAESTFTEDDVSNYF---------NTYGPVDDVRIPCQQKRMFGFVTFASADTVKMIL 394
F +STFT +YF +GPV ++I M G+V+F +TVK++L
Sbjct: 169 AFSRQSTFTVRGAWSYFRYCQFAISVRKFGPVTFLQI---LGAMRGWVSFLYPETVKLLL 225
Query: 395 A--KGNPHFVCGARVLVKPYREK 415
+ + N H + GA V + EK
Sbjct: 226 SETRSNRHLILGAVVHIFSSMEK 248
>gi|414887324|tpg|DAA63338.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 141
Score = 85.1 bits (209), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM-FGFVTFASADTVK 391
P + S +I++TF FT V YF+ YG V++V IP QKR FGFV+F +++VK
Sbjct: 11 PASSASNKIFITFNCIHIFTHTSVQKYFSQYGTVNEVIIPIMQKRPDFGFVSFLDSESVK 70
Query: 392 MILAKGNPHFVCGARVLVKPYREKSKL 418
IL++ PHF+CG V VK YREK +L
Sbjct: 71 QILSERGPHFICGNEVHVKAYREKHEL 97
>gi|295913262|gb|ADG57888.1| transcription factor [Lycoris longituba]
Length = 180
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 87/197 (44%), Gaps = 57/197 (28%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C ++ +GFCK+GS CR+ HG V DD S+E+ E
Sbjct: 35 KPCLHYQRGFCKNGSACRFLHGPV-----------------DD---ISASVEQ------E 68
Query: 244 LLKARRGNPISIASLPMLYYEKYG----KVLQAGGYLTESQRHGKAGYSLTKLLARLKNS 299
L+ R + AS Y G K + ESQR
Sbjct: 69 LMLMRSKSQRLAASAAAFPYSPTGSSSNKCFKFMLQQNESQRAAAV-------------- 114
Query: 300 VRLIDRPHGQHAVILAEDAPKYL-ENRNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVS 357
A++L + K++ R ERSD IV SRQIYLTFPA+STF E+DVS
Sbjct: 115 -----------ALMLESENQKFMGRARLERSDFAGIVNPSSRQIYLTFPADSTFREEDVS 163
Query: 358 NYFNTYGPVDDVRIPCQ 374
NYF+ YGPV DVRIP Q
Sbjct: 164 NYFSIYGPVQDVRIPYQ 180
>gi|296089905|emb|CBI39724.3| unnamed protein product [Vitis vinifera]
Length = 70
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 260 MLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAP 319
M+YYE+YG+ LQ+ LTESQ+HG+AGY TKL ARL+ ++RLI+ PHGQH +IL E P
Sbjct: 1 MIYYERYGRGLQSELSLTESQQHGEAGYDSTKLQARLR-TIRLINGPHGQHPIILTEYVP 59
Query: 320 KYLE 323
KY+E
Sbjct: 60 KYVE 63
>gi|297725823|ref|NP_001175275.1| Os07g0583500 [Oryza sativa Japonica Group]
gi|255677923|dbj|BAH94003.1| Os07g0583500 [Oryza sativa Japonica Group]
Length = 998
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 341 IYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAK 396
IY+T + T++++ +YF +GPV +V + C+ +K FGFVTF +ADTV ++L+K
Sbjct: 222 IYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSK 281
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRK 422
PHF+ G +V VK Y E +K RK
Sbjct: 282 STPHFIFGVKVRVKRYLEWTKQEQRK 307
>gi|222637348|gb|EEE67480.1| hypothetical protein OsJ_24899 [Oryza sativa Japonica Group]
Length = 739
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 341 IYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAK 396
IY+T + T++++ +YF +GPV +V + C+ +K FGFVTF +ADTV ++L+K
Sbjct: 312 IYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSK 371
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRK 422
PHF+ G +V VK Y E +K RK
Sbjct: 372 STPHFIFGVKVRVKRYLEWTKQEQRK 397
>gi|27817839|dbj|BAC55607.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 552
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 341 IYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAK 396
IY+T + T++++ +YF +GPV +V + C+ +K FGFVTF +ADTV ++L+K
Sbjct: 208 IYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVSLLLSK 267
Query: 397 GNPHFVCGARVLVKPYREKSKLVDRK 422
PHF+ G +V VK Y E +K RK
Sbjct: 268 STPHFIFGVKVRVKRYLEWTKQEQRK 293
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKG 397
IY+T A++ T ++ +YF +GPV +V IP + +K FGFVTF + DTV ++L+K
Sbjct: 375 IYITI-AKNILTWKNIRDYFKKFGPVINVYIPFKPDNEKHTFGFVTFENDDTVGLLLSKS 433
Query: 398 NPHFVCGARV 407
H + G +
Sbjct: 434 TSHSISGVEL 443
>gi|334183229|ref|NP_001185197.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332194558|gb|AEE32679.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 403
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 47/228 (20%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
+FT+ VS YF +GPV VRIP Q+++++GFV+FA+A+TV IL + NPH + + V V
Sbjct: 185 SFTDQHVSTYFGNFGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNV 244
Query: 410 KP--------YREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQL 461
+RE V + M P F + +M R E +
Sbjct: 245 TAAATTAGVGWREPFS-VGNGPKGAMSRPRRFRNETHEM------LQRNTEQA------- 290
Query: 462 LEEQEQAFELER--RRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIG 519
+ +QA E+E RRL+ LQL M+ I + + +
Sbjct: 291 --DPQQAIEVEDQIRRLSNLQLPG------------MENKSIHHHQPSPSIGSHAHFPSQ 336
Query: 520 VLNNGSTTGDR-VKHVETNYTDQESEGL------NLPDSPFANPIASG 560
V GS TG++ ++ VET +++E +G LPDS F + SG
Sbjct: 337 VREGGSGTGEKDLEQVET--SNEEHQGQEKSLENTLPDSSFGSTKESG 382
>gi|297847526|ref|XP_002891644.1| hypothetical protein ARALYDRAFT_314515 [Arabidopsis lyrata subsp.
lyrata]
gi|297337486|gb|EFH67903.1| hypothetical protein ARALYDRAFT_314515 [Arabidopsis lyrata subsp.
lyrata]
Length = 388
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 362 TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYREKSKLVD 420
+GPV DVRIP Q++RMFGFVTFA+A+TV +LA+GN H + A+ + E+ L+
Sbjct: 195 NFGPVVDVRIPNQERRMFGFVTFANAETVTTVLAQGNSHLIGESAQQQLNQLLERENLLH 254
Query: 421 ---------RKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFEL 471
R E PM F +M R+ + + +QA E+
Sbjct: 255 HPRLSGMDPRDQDESRFGPMMFRNPTQEMRQ---------------RRNVQADLQQAIEV 299
Query: 472 E--RRRLAELQL 481
E RRRL L+L
Sbjct: 300 EDQRRRLLNLKL 311
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQE---MIHLAMSPDVVIQEVVYKAKAE 57
MD T + RI L+PEN KIIGY LLQ+ E +I LA D ++
Sbjct: 1 MDPGGPTATIIERIITLEPENAFKIIGYFLLQDIEDCDLIQLAFGTD--------QSSPR 52
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFNP 87
+ L +P+SPS+ S +F +NP
Sbjct: 53 NEFLDFSRNPNPLSPSLTS----NTFGYNP 78
>gi|449532871|ref|XP_004173401.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like,
partial [Cucumis sativus]
Length = 156
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E++RIVF+RI+ LDPEN +KI+G LL+Q E+EMI LA P+ ++ V+ KAK +
Sbjct: 1 MDSYEASRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVILKAKKD 60
Query: 58 L 58
L
Sbjct: 61 L 61
>gi|218199913|gb|EEC82340.1| hypothetical protein OsI_26639 [Oryza sativa Indica Group]
Length = 243
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 363 YGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
+GPV +V + C+ +K FGFVTF +AD V ++L+K PHF+ G +V VK Y E +K
Sbjct: 24 FGPVINVYLSCKPGNEKYTFGFVTFENADMVSLLLSKSTPHFIFGVKVRVKRYLEWTKQE 83
Query: 420 DRK 422
RK
Sbjct: 84 QRK 86
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKG 397
IY+T A++ T ++ +YF +GPV +V IP + +K FGFVTF + DTV ++L+K
Sbjct: 168 IYITI-AKNILTWKNIRDYFKKFGPVINVYIPFKPDNEKHTFGFVTFENDDTVGLLLSKS 226
Query: 398 NPHFVCGARVLVK 410
H + G V VK
Sbjct: 227 TSHSISGVEVRVK 239
>gi|147859914|emb|CAN78898.1| hypothetical protein VITISV_011188 [Vitis vinifera]
Length = 337
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 8/62 (12%)
Query: 407 VLVKPYREK--SKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRK-QLLE 463
+LVKP+REK S++VDR+ + PMY+SP ++D D++ S +R C+ SR + K QL+E
Sbjct: 95 ILVKPHREKASSRIVDRR-----QYPMYYSPHFIDRDTKFQSITRICDDSRLLGKHQLME 149
Query: 464 EQ 465
E
Sbjct: 150 EH 151
>gi|15217947|ref|NP_175564.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|12325375|gb|AAG52634.1|AC024261_21 hypothetical protein; 30893-28595 [Arabidopsis thaliana]
gi|332194557|gb|AEE32678.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 391
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 47/215 (21%)
Query: 363 YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP--------YRE 414
+GPV VRIP Q+++++GFV+FA+A+TV IL + NPH + + V V +RE
Sbjct: 186 FGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNVTAAATTAGVGWRE 245
Query: 415 KSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQEQAFELER- 473
V + M P F + +M R E + + +QA E+E
Sbjct: 246 PFS-VGNGPKGAMSRPRRFRNETHEM------LQRNTEQA---------DPQQAIEVEDQ 289
Query: 474 -RRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLNNGSTTGDR-V 531
RRL+ LQL M+ I + + + V GS TG++ +
Sbjct: 290 IRRLSNLQLPG------------MENKSIHHHQPSPSIGSHAHFPSQVREGGSGTGEKDL 337
Query: 532 KHVETNYTDQESEGL------NLPDSPFANPIASG 560
+ VET +++E +G LPDS F + SG
Sbjct: 338 EQVET--SNEEHQGQEKSLENTLPDSSFGSTKESG 370
>gi|255560757|ref|XP_002521392.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223539470|gb|EEF41060.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 412
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGA 405
T TED++ YF+ YG + + +I K R FGFVTF + D+V+ I + G H + G
Sbjct: 178 TLTEDELGEYFSVYGNIVEHQIMLDHKTGRSRGFGFVTFETEDSVEQIFSTGRTHELGGK 237
Query: 406 RVLVK 410
RV +K
Sbjct: 238 RVEIK 242
>gi|359482522|ref|XP_002276110.2| PREDICTED: nucleolin-like [Vitis vinifera]
Length = 501
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTV 390
V+ +R+I++ S+ TED++ +YF++YG + + +I + R FGFVTF S D V
Sbjct: 284 VSKTRKIFVG-GIPSSLTEDELKDYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAV 342
Query: 391 KMILAKGNPHFVCGARVLVK 410
+ + ++G H + G V +K
Sbjct: 343 ERLFSEGKTHELGGKLVEIK 362
>gi|311248526|ref|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 354
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
YY+++GK+ SQR G+ + +A + + + RPH ++A K
Sbjct: 40 YYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAA--MAARPHSIDGRVVAS---K 94
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRM 378
+ R E PG VT ++++++ E T TE + +YF YG +D + I Q +K
Sbjct: 95 RVVPREESGKPGACVT-TKKLFVGGIKEDT-TERHLRDYFERYGTIDAIEIIRQSGRKTA 152
Query: 379 FGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 FGFVTFDDHDPVDKIVLQK 171
>gi|311248536|ref|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 354
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
YY+++GK+ SQR G+ + +A + + + RPH ++A K
Sbjct: 40 YYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAA--MAARPHSIDGRVVAS---K 94
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRM 378
+ R E PG VT ++++++ E T TE + +YF YG +D + I Q +K
Sbjct: 95 RVVPREESGKPGACVT-TKKLFVGGIKEDT-TERHLRDYFERYGTIDAIEIIRQSGRKTA 152
Query: 379 FGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 FGFVTFDDHDPVDKIVLQK 171
>gi|115477046|ref|NP_001062119.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|42408771|dbj|BAD10006.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113624088|dbj|BAF24033.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|215765667|dbj|BAG87364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201366|gb|EEC83793.1| hypothetical protein OsI_29708 [Oryza sativa Indica Group]
gi|222640778|gb|EEE68910.1| hypothetical protein OsJ_27766 [Oryza sativa Japonica Group]
Length = 362
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
TEDD ++F YGPV D +I ++ R FGF+ F+S V +LA GN + GA
Sbjct: 121 ALTEDDFKHFFQKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGA 180
Query: 406 RVLVK 410
+V +K
Sbjct: 181 KVEIK 185
>gi|297743097|emb|CBI35964.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTV 390
V+ +R+I++ S+ TED++ +YF++YG + + +I + R FGFVTF S D V
Sbjct: 136 VSKTRKIFVG-GIPSSLTEDELKDYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAV 194
Query: 391 KMILAKGNPHFVCGARVLVK 410
+ + ++G H + G V +K
Sbjct: 195 ERLFSEGKTHELGGKLVEIK 214
>gi|405960878|gb|EKC26752.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 420
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+ ++G++L L + +R GK G S R + + Q +I
Sbjct: 145 YFSQFGELL-----LVQVKRDGKTGQSKGFGFVRFGD-FEAQSKCLAQRHMIDGRWCEVN 198
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGF 381
+ NE+S P P+ +R++++ +E T DD+ YF+ +G V DV IP + R F F
Sbjct: 199 IPASNEQSGP-PM---NRKVFIARCSED-ITADDLHKYFSKFGEVSDVFIP-KPFRAFAF 252
Query: 382 VTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416
VTF A+ + + G H + G V V KS
Sbjct: 253 VTFMDAEIAQSLC--GEDHIIKGTSVHVSSATPKS 285
>gi|392339470|ref|XP_003753820.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Rattus norvegicus]
Length = 341
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + V + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDVAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E PG VT +++++ E T E + +YF YG +D + I + KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGXKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|326531676|dbj|BAJ97842.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TEDD+ ++F++YG V + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 160 STLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 219
Query: 405 ARVLVK 410
+V +K
Sbjct: 220 KQVEIK 225
>gi|326487243|dbj|BAJ89606.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506666|dbj|BAJ91374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TEDD+ ++F++YG V + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 160 STLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 219
Query: 405 ARVLVK 410
+V +K
Sbjct: 220 KQVEIK 225
>gi|224126191|ref|XP_002329613.1| predicted protein [Populus trichocarpa]
gi|222870352|gb|EEF07483.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 48.1 bits (113), Expect = 0.013, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVT 383
R D VT +++I++ S TED++ YF+ YG + D +I K R FGFVT
Sbjct: 77 REDMEVRVTRTKKIFVGGIPPS-LTEDELKEYFSVYGSIVDHQIMLDHKTGRSRGFGFVT 135
Query: 384 FASADTVKMILAKGNPHFVCGARV 407
F S D V+ I ++G H + G +V
Sbjct: 136 FDSEDAVERIFSEGRTHELGGKQV 159
>gi|444523821|gb|ELV13633.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Tupaia chinensis]
Length = 304
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 56 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 111
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 112 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 169
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 170 GFGFVTFDDHDPVDKIVLQK 189
>gi|224129106|ref|XP_002320502.1| predicted protein [Populus trichocarpa]
gi|222861275|gb|EEE98817.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHA-VILAEDA- 318
Y+ +G+V++A + + + G+A G+ + A + R+I H ++ A+ A
Sbjct: 25 YFRSFGEVVEA--VIMKDRTTGRARGFGFV-VFADPAVAERVIKEKHSIDGRMVEAKKAV 81
Query: 319 ---PKYLENRNE----RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI 371
+ + NRN S PGP T ++I++ A ST TE+D NYF+ +G + DV +
Sbjct: 82 PRDDQNILNRNSGGSIHSSPGPGRT--KKIFVGGLA-STVTENDFKNYFDQFGTIIDVVV 138
Query: 372 ----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+TF S + V +L + H + G V VK
Sbjct: 139 MYDHNTQRPRGFGFITFDSEEAVDKVLMR-TFHELNGKMVEVK 180
>gi|255576302|ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223531524|gb|EEF33355.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 478
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA-- 318
Y+ KYG+V++A + + G+A G+ ++D+ + A+ A
Sbjct: 25 YFSKYGEVVEA--VIMRDRTTGRARGFGFVVFADPAVAERVIVDKHMIDGRTVEAKKAVP 82
Query: 319 --PKYLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
+++ NRN S PGP T ++I++ A ST T++D YF +G + DV +
Sbjct: 83 RDDQHILNRNTSSIHGSPGPGRT--KKIFVGGLA-STVTDNDFKKYFEQFGNITDVVVMY 139
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V +L K H + G V VK
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDRVLHK-TFHELNGKMVEVK 179
>gi|224161731|ref|XP_002338367.1| predicted protein [Populus trichocarpa]
gi|222872031|gb|EEF09162.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 47.8 bits (112), Expect = 0.016, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVT 383
R D VT +++I++ S TED++ YF+ YG + D +I K R FGFVT
Sbjct: 62 REDMEVRVTRTKKIFVGGIPPS-LTEDELKEYFSVYGSIVDHQIMLDHKTGRSRGFGFVT 120
Query: 384 FASADTVKMILAKGNPHFVCGARV 407
F S D V+ I ++G H + G +V
Sbjct: 121 FDSEDAVERIFSEGRTHELGGKQV 144
>gi|449688875|ref|XP_002157235.2| PREDICTED: TAR DNA-binding protein 43-like, partial [Hydra
magnipapillata]
Length = 271
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 345 FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
PA+++ EDD+ YF+ YG + DV +P R FGFVT+A AD +++L K H + G
Sbjct: 118 LPADTS--EDDLRKYFSDYGELTDVYLPTPF-RGFGFVTYAQADDAQIVLHKS--HSLKG 172
Query: 405 ARVLV 409
+R+ V
Sbjct: 173 SRMNV 177
>gi|357447963|ref|XP_003594257.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483305|gb|AES64508.1| RNA-binding protein, putative [Medicago truncatula]
Length = 411
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 324 NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMF 379
N + P P +++I++ A ST TE D NYF+ +G + DV + Q+ R F
Sbjct: 21 NSSSHGSPAPTPIRTKKIFVGGLA-STVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGF 79
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARVLVK 410
GF+T+ S + V+ +L K H + G V VK
Sbjct: 80 GFITYDSEEAVEKVLHK-TFHELNGKMVEVK 109
>gi|242093370|ref|XP_002437175.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
gi|241915398|gb|EER88542.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
Length = 414
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 197 SSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGG 256
Query: 405 ARVLVK 410
+V +K
Sbjct: 257 KQVEIK 262
>gi|297737532|emb|CBI26733.3| unnamed protein product [Vitis vinifera]
Length = 309
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA-- 318
Y+ YG+V++A + + G+A G+ ++D+ + A+ A
Sbjct: 25 YFRTYGEVVEA--VIMRDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVP 82
Query: 319 --PKYLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
++L NRN S PGP T ++I++ A ST TE D YF+ +G ++DV +
Sbjct: 83 RDDQHLLNRNTGSIHGSPGPGRT--KKIFVGGLA-STVTESDFKKYFDQFGTINDVVVMY 139
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V+ +L K H + G V VK
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVERVLHK-TFHELNGKMVEVK 179
>gi|443686443|gb|ELT89721.1| hypothetical protein CAPTEDRAFT_175992 [Capitella teleta]
Length = 444
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+R++++ E T DD+ +YFN +G V DV IP + R F FVTFA + + G
Sbjct: 190 NRKVFIGRCTED-MTADDLRSYFNKFGEVVDVFIP-KPFRAFAFVTFADPEVAHALC--G 245
Query: 398 NPHFVCGARVLVKPYREKSKLVDRKYQE-RMESPMY------FSP 435
H + GA V V KS D+ Q+ R + PM+ FSP
Sbjct: 246 EDHIIKGASVHVSNAAPKS--FDKHNQDNRGKGPMFNQGPQGFSP 288
>gi|147804734|emb|CAN67089.1| hypothetical protein VITISV_033546 [Vitis vinifera]
Length = 145
Score = 47.4 bits (111), Expect = 0.021, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTV 390
V+ +R+I++ S+ TED++ +YF++YG + + +I + R FGFVTF S D V
Sbjct: 54 VSKTRKIFVG-GIPSSLTEDELKDYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAV 112
Query: 391 KMILAKGNPHFVCGARVLVK 410
+ + ++G H + G V ++
Sbjct: 113 ERLFSEGKTHELGGKLVTLR 132
>gi|148666221|gb|EDK98637.1| mCG119114, isoform CRA_a [Mus musculus]
Length = 357
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 84 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 139
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 140 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 197
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 198 GFGFVTFDDHDPVDKIVLQK 217
>gi|390364931|ref|XP_787866.3| PREDICTED: uncharacterized protein LOC582835 [Strongylocentrotus
purpuratus]
Length = 667
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAK 396
T +D+ YF YG V DV IP +KR+FGFVTF +DTV +++K
Sbjct: 587 TAEDLKAYFTNYGVVTDVSIPPSTEGKKRVFGFVTFEDSDTVDKLISK 634
>gi|225460779|ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera]
Length = 478
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDRPHGQHAVILA 315
Y+ YG+V++A + + G+A G+ + R+ +ID + +
Sbjct: 25 YFRTYGEVVEA--VIMRDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVP 82
Query: 316 EDAPKYLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
D ++L NRN S PGP T ++I++ A ST TE D YF+ +G ++DV +
Sbjct: 83 RD-DQHLLNRNTGSIHGSPGPGRT--KKIFVGGLA-STVTESDFKKYFDQFGTINDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK--------PYREKSKLVD 420
Q+ R FGF+T+ S + V+ +L K H + G V VK P +S LV
Sbjct: 139 YDHNTQRPRGFGFITYDSEEAVERVLHK-TFHELNGKMVEVKRAVPKEHSPGPSRSPLVG 197
Query: 421 RKY 423
Y
Sbjct: 198 YNY 200
>gi|147783406|emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera]
Length = 482
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDRPHGQHAVILA 315
Y+ YG+V++A + + G+A G+ + R+ +ID + +
Sbjct: 25 YFRTYGEVVEA--VIMRDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVP 82
Query: 316 EDAPKYLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
D ++L NRN S PGP T ++I++ A ST TE D YF+ +G ++DV +
Sbjct: 83 RD-DQHLLNRNTGSIHGSPGPGRT--KKIFVGGLA-STVTESDFKKYFDQFGTINDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK--------PYREKSKLVD 420
Q+ R FGF+T+ S + V+ +L K H + G V VK P +S LV
Sbjct: 139 YDHNTQRPRGFGFITYDSEEAVERVLHK-TFHELNGKMVEVKRAVPKEHSPGPSRSPLVG 197
Query: 421 RKY 423
Y
Sbjct: 198 YNY 200
>gi|90083957|dbj|BAE90929.1| unnamed protein product [Macaca fascicularis]
Length = 317
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>gi|31455238|gb|AAH00506.3| HNRNPA2B1 protein [Homo sapiens]
Length = 249
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|357447959|ref|XP_003594255.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483303|gb|AES64506.1| RNA-binding protein, putative [Medicago truncatula]
Length = 446
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 324 NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMF 379
N + P P +++I++ A ST TE D NYF+ +G + DV + Q+ R F
Sbjct: 56 NSSSHGSPAPTPIRTKKIFVGGLA-STVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGF 114
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARVLVK 410
GF+T+ S + V+ +L K H + G V VK
Sbjct: 115 GFITYDSEEAVEKVLHK-TFHELNGKMVEVK 144
>gi|296196619|ref|XP_002745917.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Callithrix jacchus]
Length = 341
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|197101465|ref|NP_001127331.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pongo abelii]
gi|75070806|sp|Q5RBU8.1|ROA2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|55728019|emb|CAH90762.1| hypothetical protein [Pongo abelii]
Length = 353
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVK 410
FGFVTF D V K++L K H + G V+
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK--HHTINGHNAEVR 185
>gi|198431578|ref|XP_002128542.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A3
[Ciona intestinalis]
Length = 334
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+ KYGK+ + + +S G+ + + DRPH ++ + D +
Sbjct: 32 YFSKYGKI-EDCVVIKDSSTGRSKGFGFVTFETEAEADACMDDRPHTLNSRQI--DVKRA 88
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----R 377
+ +R E PG ++I++ + E ++ YF +G ++ +P ++ R
Sbjct: 89 V-SREESVKPGAHFQ-VKKIFIGGLKDGC-DETNLKEYFGQFGTIETFELPLERDSEKPR 145
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQ 424
F F+TF DTV ++AK H+V G R VK K+++ K Q
Sbjct: 146 GFAFITFEDHDTVDKLVAK-RHHYVNGVRCEVKKALSKAEMEKAKTQ 191
>gi|226505238|ref|NP_001141380.1| hypothetical protein [Zea mays]
gi|194704250|gb|ACF86209.1| unknown [Zea mays]
gi|413954079|gb|AFW86728.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 345
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 135 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGK 194
Query: 406 RVLVK 410
+V +K
Sbjct: 195 QVEIK 199
>gi|357447957|ref|XP_003594254.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483302|gb|AES64505.1| RNA-binding protein, putative [Medicago truncatula]
Length = 522
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 324 NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMF 379
N + P P +++I++ A ST TE D NYF+ +G + DV + Q+ R F
Sbjct: 132 NSSSHGSPAPTPIRTKKIFVGGLA-STVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGF 190
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARVLVK 410
GF+T+ S + V+ +L K H + G V VK
Sbjct: 191 GFITYDSEEAVEKVLHK-TFHELNGKMVEVK 220
>gi|215712317|dbj|BAG94444.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 436
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
TEDD ++F YGPV D +I ++ R FGF+ F+S V +LA GN + GA
Sbjct: 121 ALTEDDFKHFFQKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGA 180
Query: 406 RVL 408
+++
Sbjct: 181 KLI 183
>gi|15226106|ref|NP_180899.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|2459445|gb|AAB80680.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|22530920|gb|AAM96964.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|23198416|gb|AAN15735.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330253737|gb|AEC08831.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 404
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
T D+ YF TYGPV D I Q+ R FGFV+F S D+V ++L K H + G
Sbjct: 120 ALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK-TFHDLNGK 178
Query: 406 RVLVK 410
+V VK
Sbjct: 179 QVEVK 183
>gi|4504447|ref|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo
sapiens]
gi|114051756|ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus]
gi|73976082|ref|XP_863847.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 3
[Canis lupus familiaris]
gi|332242620|ref|XP_003270483.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Nomascus leucogenys]
gi|332864909|ref|XP_003318407.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Pan troglodytes]
gi|338724111|ref|XP_003364873.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Equus caballus]
gi|350595419|ref|XP_003484106.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Sus scrofa]
gi|390466619|ref|XP_003733620.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Callithrix jacchus]
gi|397472888|ref|XP_003807964.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Pan paniscus]
gi|402863875|ref|XP_003896219.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Papio anubis]
gi|403287969|ref|XP_003935191.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Saimiri boliviensis boliviensis]
gi|410952506|ref|XP_003982920.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Felis catus]
gi|426355697|ref|XP_004045246.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Gorilla gorilla gorilla]
gi|122145945|sp|Q2HJ60.1|ROA2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|337449|gb|AAA36574.1| hnRNP A2 protein [Homo sapiens]
gi|500638|gb|AAB60650.1| hnRNP protein A2 [Homo sapiens]
gi|565644|dbj|BAA06032.1| hnRNP A2 protein [Homo sapiens]
gi|87578315|gb|AAI13299.1| Heterogeneous nuclear ribonucleoprotein A2/B1 [Bos taurus]
gi|119614241|gb|EAW93835.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_b [Homo
sapiens]
gi|119614242|gb|EAW93836.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_b [Homo
sapiens]
gi|149033380|gb|EDL88181.1| rCG52521, isoform CRA_a [Rattus norvegicus]
gi|149033381|gb|EDL88182.1| rCG52521, isoform CRA_a [Rattus norvegicus]
gi|296488431|tpg|DAA30544.1| TPA: heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus]
gi|387542842|gb|AFJ72048.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Macaca
mulatta]
gi|410225452|gb|JAA09945.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343561|gb|JAA40594.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343565|gb|JAA40596.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343567|gb|JAA40597.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343569|gb|JAA40598.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|456753293|gb|JAA74140.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Sus scrofa]
Length = 341
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|158259881|dbj|BAF82118.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>gi|147789024|emb|CAN75779.1| hypothetical protein VITISV_012423 [Vitis vinifera]
Length = 345
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F+ YG V++ +I + R FGF+ F S + V IL++GN + G
Sbjct: 101 STVTEDEFKDFFSKYGKVEEHQIIRDHETNRSRGFGFIIFESEEVVDEILSEGNMIDMAG 160
Query: 405 ARVLVKPYREKSKLVDRKYQE 425
+V + + ++K V+ K E
Sbjct: 161 TQVSILQWSPRNKHVEIKKAE 181
>gi|109134362|ref|NP_058086.2| heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1 [Mus
musculus]
gi|309267107|ref|XP_001473875.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Mus musculus]
gi|21071091|gb|AAK98601.2| heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
gi|148666222|gb|EDK98638.1| mCG119114, isoform CRA_b [Mus musculus]
gi|148666223|gb|EDK98639.1| mCG119114, isoform CRA_b [Mus musculus]
Length = 341
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|291394569|ref|XP_002713772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1
[Oryctolagus cuniculus]
gi|291397610|ref|XP_002715276.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1
[Oryctolagus cuniculus]
Length = 352
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>gi|296084992|emb|CBI28407.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHA-VILAEDA- 318
Y+ YG+V++A + + + G+A G+ + A + R+I H ++ A+ A
Sbjct: 25 YFSNYGEVVEA--VIMKDRTTGRARGFGFV-VFADPAVAERVIKEKHNIDGRMVEAKKAV 81
Query: 319 PK---YLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
PK + +RN S PGP T R+I++ A ST TE D YF+ +G + DV +
Sbjct: 82 PKDDQSILSRNSGSIHGSPGPGRT--RKIFVGGLA-STVTESDFKKYFDQFGAITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYESEEAVDKVLLK-TFHELNGKMVEVK 179
>gi|215712318|dbj|BAG94445.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 382
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
TEDD ++F YGPV D +I ++ R FGF+ F+S V +LA GN + GA
Sbjct: 67 ALTEDDFKHFFQKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGA 126
Query: 406 RVL 408
+++
Sbjct: 127 KLI 129
>gi|225447606|ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
Length = 478
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHA-VILAEDA- 318
Y+ YG+V++A + + + G+A G+ + A + R+I H ++ A+ A
Sbjct: 25 YFSNYGEVVEA--VIMKDRTTGRARGFGFV-VFADPAVAERVIKEKHNIDGRMVEAKKAV 81
Query: 319 PK---YLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
PK + +RN S PGP T R+I++ A ST TE D YF+ +G + DV +
Sbjct: 82 PKDDQSILSRNSGSIHGSPGPGRT--RKIFVGGLA-STVTESDFKKYFDQFGAITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYESEEAVDKVLLK-TFHELNGKMVEVK 179
>gi|297823133|ref|XP_002879449.1| hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp.
lyrata]
gi|297325288|gb|EFH55708.1| hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp.
lyrata]
Length = 403
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
T D+ YF TYGPV D I Q+ R FGFV+F S D+V ++L K H + G
Sbjct: 120 ALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK-TFHDLNGK 178
Query: 406 RVLVK 410
+V VK
Sbjct: 179 QVEVK 183
>gi|357124087|ref|XP_003563738.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like isoform 2 [Brachypodium distachyon]
Length = 354
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKM 392
+R+I++ P ++ TE + +F++YG V++ +I + R FGFVTF S D V+
Sbjct: 115 TRKIFVGGIP--TSLTEGKLKEHFSSYGKVEEHQIMVDHSTGRSRGFGFVTFESEDAVER 172
Query: 393 ILAKGNPHFVCGARVLVK 410
++++G H + G +V +K
Sbjct: 173 VMSEGRMHDLGGKQVEIK 190
>gi|327274637|ref|XP_003222083.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Anolis carolinensis]
Length = 349
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 36 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDSAMAARPHSIDGRVVE---PKR 91
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF+ YG +D + I +KR
Sbjct: 92 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFSEYGKIDTIEIITDRQSGKKR 149
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 150 GFGFVTFDDHDPVDKIVLQK 169
>gi|344270293|ref|XP_003406980.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Loxodonta africana]
Length = 365
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 52 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 107
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 108 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 165
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 166 GFGFVTFDDHDPVDKIVLQK 185
>gi|14043072|ref|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo
sapiens]
gi|388452958|ref|NP_001252700.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Macaca mulatta]
gi|73976084|ref|XP_532495.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Canis lupus familiaris]
gi|194209740|ref|XP_001498416.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Equus caballus]
gi|296209404|ref|XP_002751505.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Callithrix jacchus]
gi|301754131|ref|XP_002912905.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Ailuropoda melanoleuca]
gi|332242622|ref|XP_003270484.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Nomascus leucogenys]
gi|332864911|ref|XP_519003.3| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Pan troglodytes]
gi|335305558|ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Sus scrofa]
gi|395830927|ref|XP_003788564.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Otolemur
garnettii]
gi|397472890|ref|XP_003807965.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Pan paniscus]
gi|402863877|ref|XP_003896220.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Papio anubis]
gi|403287971|ref|XP_003935192.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410952508|ref|XP_003982921.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Felis catus]
gi|426227786|ref|XP_004007996.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Ovis
aries]
gi|426355699|ref|XP_004045247.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Gorilla gorilla gorilla]
gi|133257|sp|P22626.2|ROA2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|337453|gb|AAA60271.1| hnRNP B1 protein [Homo sapiens]
gi|565643|dbj|BAA06031.1| hnRNP B1 protein [Homo sapiens]
gi|119614243|gb|EAW93837.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_c [Homo
sapiens]
gi|119614245|gb|EAW93839.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_c [Homo
sapiens]
gi|387542844|gb|AFJ72049.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Macaca
mulatta]
gi|410225454|gb|JAA09946.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343563|gb|JAA40595.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
Length = 353
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>gi|124028629|sp|O88569.2|ROA2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|23266713|gb|AAN16352.1|AF452567_1 heterogeneous nuclear ribonucleoprotein A2/B1/B0 [Mus musculus]
Length = 353
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>gi|440899276|gb|ELR50605.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Bos
grunniens mutus]
Length = 339
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 26 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 81
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 82 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 139
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 140 GFGFVTFDDHDPVDKIVLQK 159
>gi|32880197|ref|NP_872591.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2 [Mus
musculus]
gi|26354140|dbj|BAC40700.1| unnamed protein product [Mus musculus]
gi|223461557|gb|AAI41254.1| Hnrnpa2b1 protein [Mus musculus]
Length = 301
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|343961425|dbj|BAK62302.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pan troglodytes]
Length = 301
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|417410136|gb|JAA51545.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 368
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 55 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 110
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 111 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 168
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 169 GFGFVTFDDHDPVDKIVLQK 188
>gi|351704285|gb|EHB07204.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial
[Heterocephalus glaber]
gi|355560744|gb|EHH17430.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Macaca
mulatta]
gi|355747762|gb|EHH52259.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Macaca
fascicularis]
Length = 352
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 39 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 94
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 95 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 152
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 153 GFGFVTFDDHDPVDKIVLQK 172
>gi|395540406|ref|XP_003772146.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1
[Sarcophilus harrisii]
Length = 385
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 53 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMSARPHSIDGRVVE---PKR 108
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 109 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 166
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 167 GFGFVTFDDHDPVDKIVLQK 186
>gi|357148248|ref|XP_003574688.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like
[Brachypodium distachyon]
Length = 359
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TEDD ++F YG V D +I ++ R FGFV F S V +LA GN + G
Sbjct: 121 STLTEDDFKDFFEKYGTVVDHQIMRDHQTRRSRGFGFVVFCSEQVVDDLLANGNMIDLAG 180
Query: 405 ARVLVK 410
++V +K
Sbjct: 181 SKVEIK 186
>gi|348564390|ref|XP_003467988.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Cavia porcellus]
Length = 383
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 70 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 125
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 126 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 183
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 184 GFGFVTFDDHDPVDKIVLQK 203
>gi|410058693|ref|XP_003951016.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Pan
troglodytes]
gi|119614240|gb|EAW93834.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_a [Homo
sapiens]
Length = 301
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 7/78 (8%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKM 392
+R+I++ PA + +EDD+ ++F++YG V + +I + R FGFVTF S D+V+
Sbjct: 153 TRKIFVGGLPA--SLSEDDLRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 210
Query: 393 ILAKGNPHFVCGARVLVK 410
++++G + G +V +K
Sbjct: 211 VISEGRMRDLGGKQVEIK 228
>gi|3329498|gb|AAC26867.1| heterogenous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|417409751|gb|JAA51367.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 328
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 55 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 110
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 111 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 168
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 169 GFGFVTFDDHDPVDKIVLQK 188
>gi|357140381|ref|XP_003571747.1| PREDICTED: uncharacterized protein LOC100831046 isoform 2
[Brachypodium distachyon]
Length = 383
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 7/78 (8%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKM 392
+R+I++ PA + +EDD+ ++F++YG V + +I + R FGFVTF S D+V+
Sbjct: 133 TRKIFVGGLPA--SLSEDDLRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 190
Query: 393 ILAKGNPHFVCGARVLVK 410
++++G + G +V +K
Sbjct: 191 VISEGRMRDLGGKQVEIK 208
>gi|354472764|ref|XP_003498607.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Cricetulus griseus]
Length = 357
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 44 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 99
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 100 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 157
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 158 GFGFVTFDDHDPVDKIVLQK 177
>gi|281349549|gb|EFB25133.1| hypothetical protein PANDA_000670 [Ailuropoda melanoleuca]
Length = 323
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|334349111|ref|XP_001368260.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Monodelphis domestica]
Length = 341
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMSARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|149634029|ref|XP_001510026.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Ornithorhynchus anatinus]
gi|345323587|ref|XP_003430725.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 2 [Ornithorhynchus anatinus]
Length = 344
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMSARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|75074832|sp|Q9TTV2.1|ROA2_SAGOE RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1; AltName: Full=Vitamin D response
element-binding protein 2; Short=VDRE-BP 2
gi|6273351|gb|AAF06330.1|AF192348_1 vitamin D response element binding protein [Saguinus oedipus]
Length = 341
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFAEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|356547342|ref|XP_003542073.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Glycine max]
Length = 353
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 335 VTG---SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--------QKRMFGFVT 383
VTG +++I++ A+ FT+D++ YF+ YG V I CQ + R FGFVT
Sbjct: 122 VTGVFKTKKIFVGGIAQ-FFTDDELREYFSPYGNV----IECQIMLDHNTGRSRGFGFVT 176
Query: 384 FASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD 420
F D+V+ + + G H + G +V +K K VD
Sbjct: 177 FDDEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVD 213
>gi|413943841|gb|AFW76490.1| hypothetical protein ZEAMMB73_698498 [Zea mays]
Length = 413
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 199 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGK 258
Query: 406 RVLVK 410
+V +K
Sbjct: 259 QVEIK 263
>gi|226503497|ref|NP_001145761.1| uncharacterized protein LOC100279268 [Zea mays]
gi|219884331|gb|ACL52540.1| unknown [Zea mays]
Length = 413
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 199 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGK 258
Query: 406 RVLVK 410
+V +K
Sbjct: 259 QVEIK 263
>gi|74209393|dbj|BAE23274.1| unnamed protein product [Mus musculus]
Length = 301
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTVKMIL 394
FGFVTF D V I+
Sbjct: 142 GFGFVTFDDHDPVDKIV 158
>gi|71896753|ref|NP_001026156.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Gallus gallus]
gi|53127438|emb|CAG31102.1| hypothetical protein RCJMB04_2g17 [Gallus gallus]
Length = 349
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 36 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHTIDGRVVE---PKR 91
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 92 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 149
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 150 GFGFVTFDDHDPVDKIVLQK 169
>gi|326921905|ref|XP_003207194.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Meleagris gallopavo]
Length = 362
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 49 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHTIDGRVVE---PKR 104
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 105 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 162
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 163 GFGFVTFDDHDPVDKIVLQK 182
>gi|224065561|ref|XP_002301858.1| predicted protein [Populus trichocarpa]
gi|222843584|gb|EEE81131.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 46.2 bits (108), Expect = 0.046, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 337 GSRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVK 391
G+++I++ P ST TED YF +YG V+DV + Q+ R FGF+TF S D V
Sbjct: 90 GTKKIFVGGLP--STVTEDGFRQYFQSYGHVNDVVVMYDQQTQRPRGFGFITFDSEDAVD 147
Query: 392 MILAK 396
+L K
Sbjct: 148 NVLQK 152
>gi|335302749|ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 447
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 134 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 189
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG VD + I +KR
Sbjct: 190 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKVDTIEIITDRQSGKKR 247
Query: 378 MFGFVTFASADTV-KMILAK 396
FGF TF D V K++L K
Sbjct: 248 GFGFFTFDDHDPVDKIVLQK 267
>gi|345323589|ref|XP_003430726.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 3 [Ornithorhynchus anatinus]
Length = 302
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMSARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|449268325|gb|EMC79194.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Columba
livia]
Length = 339
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 26 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHTIDGRVVE---PKR 81
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 82 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 139
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 140 GFGFVTFDDHDPVDKIVLQK 159
>gi|157059859|dbj|BAF79675.1| heterogeneous nuclear ribonucleoprotein A2 [Rattus norvegicus]
Length = 341
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTVKMIL 394
FGFVTF D V I
Sbjct: 142 GFGFVTFDDHDPVDKIF 158
>gi|413954077|gb|AFW86726.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 401
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 191 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGK 250
Query: 406 RVLVK 410
+V +K
Sbjct: 251 QVEIK 255
>gi|157059865|dbj|BAF79678.1| heterogeneous nuclear ribonucleoprotein B0b [Rattus norvegicus]
Length = 313
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTVKMIL 394
FGFVTF D V I
Sbjct: 154 GFGFVTFDDHDPVDKIF 170
>gi|355694911|gb|AER99826.1| heteroproteinous nuclear ribonucleoprotein A2/B1 [Mustela putorius
furo]
Length = 173
Score = 45.8 bits (107), Expect = 0.052, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 26 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 81
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 82 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 139
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 140 GFGFVTFDDHDPVDKIVLQK 159
>gi|157265559|ref|NP_001098083.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Rattus norvegicus]
gi|224493240|sp|A7VJC2.1|ROA2_RAT RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|157059861|dbj|BAF79676.1| heterogeneous nuclear ribonucleoprotein B1 [Rattus norvegicus]
Length = 353
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTVKMIL 394
FGFVTF D V I
Sbjct: 154 GFGFVTFDDHDPVDKIF 170
>gi|413954080|gb|AFW86729.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 270
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 60 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGK 119
Query: 406 RVLVK 410
+V +K
Sbjct: 120 QVEIK 124
>gi|293336544|ref|NP_001168743.1| uncharacterized protein LOC100382538 [Zea mays]
gi|223972773|gb|ACN30574.1| unknown [Zea mays]
gi|413936749|gb|AFW71300.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
gi|413936750|gb|AFW71301.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
Length = 384
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKM 392
+R+I++ PA + TED++ ++F+ YG V + +I + R FGFVTF S D+V+
Sbjct: 143 TRKIFIGGLPA--SLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVER 200
Query: 393 ILAKGNPHFVCGARVLVK 410
++++G + G +V +K
Sbjct: 201 VISEGRMRDLGGKQVEIK 218
>gi|157059863|dbj|BAF79677.1| heterogeneous nuclear ribonucleoprotein B0a [Rattus norvegicus]
Length = 301
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTVKMIL 394
FGFVTF D V I
Sbjct: 142 GFGFVTFDDHDPVDKIF 158
>gi|71027799|ref|XP_763543.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350496|gb|EAN31260.1| nucleic acid binding factor, putative [Theileria parva]
Length = 421
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ-----KRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
T+DD+ +YF +G V D P Q + FGF++F + D+++ + G PH + G
Sbjct: 130 TKDDLEDYFKKFGTVYDAYCPRQNNYSGLNKGFGFISFENEDSIRKVFESG-PHVIMGRE 188
Query: 407 VLV 409
V+V
Sbjct: 189 VIV 191
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 359 YFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
YF+ +G V DV IP Q+ + FGF+TFA+ +++ L H V G ++V
Sbjct: 357 YFSQFGEVIDVYIPKDPHTQKGKGFGFITFANKNSIHSALDPSLKHVVDGREIIV 411
>gi|449492608|ref|XP_002192177.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1
[Taeniopygia guttata]
Length = 309
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 36 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHTIDGRVVE---PKR 91
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 92 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 149
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 150 GFGFVTFDDHDPVDKIVLQK 169
>gi|22328624|ref|NP_193166.2| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|18152698|emb|CAC83517.1| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|110740752|dbj|BAE98475.1| ribonucleoprotein like protein [Arabidopsis thaliana]
gi|332658011|gb|AEE83411.1| ribonucleoprotein 1 [Arabidopsis thaliana]
Length = 411
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGA 405
T T+++ YF YGPV DV I Q R FGFV+F S D V +L K H + G
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGK 178
Query: 406 RVLVK 410
+V VK
Sbjct: 179 QVEVK 183
>gi|224135041|ref|XP_002327552.1| predicted protein [Populus trichocarpa]
gi|222836106|gb|EEE74527.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 45.8 bits (107), Expect = 0.059, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTV 390
VT +++I++ S TED++ YF+ YG + D +I K R FGFVTF D V
Sbjct: 85 VTRTKKIFVGGIPPS-LTEDELKEYFSVYGSIVDHQIMLDHKTGRSRGFGFVTFDIEDAV 143
Query: 391 KMILAKGNPHFVCGARV 407
+ I ++G H + G +V
Sbjct: 144 EQIFSEGRTHELGGKQV 160
>gi|357124085|ref|XP_003563737.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like isoform 1 [Brachypodium distachyon]
Length = 410
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKM 392
+R+I++ P ++ TE + +F++YG V++ +I + R FGFVTF S D V+
Sbjct: 171 TRKIFVGGIP--TSLTEGKLKEHFSSYGKVEEHQIMVDHSTGRSRGFGFVTFESEDAVER 228
Query: 393 ILAKGNPHFVCGARVLVK 410
++++G H + G +V +K
Sbjct: 229 VMSEGRMHDLGGKQVEIK 246
>gi|219519440|gb|AAI45589.1| Heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDGAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>gi|89269835|emb|CAJ82537.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Xenopus (Silurana)
tropicalis]
Length = 327
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMDEVDASMAARPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E + PG VT +++++ E T E + YF YG ++ + I +KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIESIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
FGFVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + NY+ +G + D +R P ++ R FGFVTF+S D V +A PH + G
Sbjct: 21 TEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMA-ARPHTIDGR-- 77
Query: 408 LVKPYR 413
+V+P R
Sbjct: 78 VVEPKR 83
>gi|329112537|ref|NP_001016926.2| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 328
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMDEVDASMAARPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E + PG VT +++++ E T E + YF YG ++ + I +KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIESIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
FGFVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + NY+ +G + D +R P ++ R FGFVTF+S D V +A PH + G
Sbjct: 21 TEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMA-ARPHTIDGR-- 77
Query: 408 LVKPYR 413
+V+P R
Sbjct: 78 VVEPKR 83
>gi|427797249|gb|JAA64076.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 521
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+E +G+VL A + + + G++ G+ + + ++ VR + + H +I
Sbjct: 158 YFETFGEVLMA--QVKKDPKTGQSKGFGFIRF-SSYESQVRALSKRH----LIDGRWCDV 210
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
+ N + G SR++++ E + DD+ +YF+ YG V DV IP + R F
Sbjct: 211 KIPNSKVSAQDGQASELSRKVFVGRCTED-LSSDDLRDYFSKYGEVTDVFIP-KPFRAFA 268
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
FVTF D + + G H + G + V KS+
Sbjct: 269 FVTFVDPDVAQSLC--GEDHIIRGTSIHVSNAVPKSE 303
>gi|313231361|emb|CBY08476.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI---PCQQKRMFGFVTFASADTVK 391
V S ++++ A T + + +YF+ +G V +I + + +GFVTFA D+
Sbjct: 57 VASSNKLFVGGLAHLNHTNEMLEDYFSKWGKVLSFQIIKDAGHRSKGYGFVTFAHVDSAS 116
Query: 392 MILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMY 432
L HF+ G V VK +EK + R YQ SP Y
Sbjct: 117 ACLNSAQ-HFIEGRSVSVKNCKEKERH-GRPYQNSYNSPTY 155
>gi|297804878|ref|XP_002870323.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
gi|297316159|gb|EFH46582.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGA 405
T T+++ YF YGPV DV I Q R FGFV+F S D V +L K H + G
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDRVLHK-TFHDLSGK 178
Query: 406 RVLVK 410
+V VK
Sbjct: 179 QVEVK 183
>gi|2244786|emb|CAB10209.1| ribonucleoprotein like protein [Arabidopsis thaliana]
gi|7268135|emb|CAB78472.1| ribonucleoprotein like protein [Arabidopsis thaliana]
Length = 406
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGA 405
T T+++ YF YGPV DV I Q R FGFV+F S D V +L K H + G
Sbjct: 115 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGK 173
Query: 406 RVLVK 410
+V VK
Sbjct: 174 QVEVK 178
>gi|66809481|ref|XP_638463.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996868|sp|Q54PB2.1|MRD1_DICDI RecName: Full=Multiple RNA-binding domain-containing protein 1;
AltName: Full=RNA-binding motif protein 19 homolog;
AltName: Full=RNA-binding protein 19 homolog
gi|60467060|gb|EAL65101.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 895
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK---RMFGFVTFASADTVKMIL 394
S+ I P EST E + F YG + VRIP + R FGFV F + + K +
Sbjct: 795 SKIIIKNLPFESTIKE--IRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAM 852
Query: 395 -AKGNPHFVCGARVLVKPYREKSKLVD 420
A GN HF R LV Y E+ K +D
Sbjct: 853 EALGNSHFY--GRHLVLQYAEQDKNID 877
>gi|293336929|ref|NP_001168878.1| uncharacterized protein LOC100382683 [Zea mays]
gi|223973459|gb|ACN30917.1| unknown [Zea mays]
gi|414871120|tpg|DAA49677.1| TPA: hypothetical protein ZEAMMB73_860016 [Zea mays]
Length = 443
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED YF T+G V DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 124 STLTEDGFRQYFQTFGIVTDVVVMYDQNTQRPRGFGFITFDSEDAVDHVLQK-TFHDLGG 182
Query: 405 ARVLVK 410
V VK
Sbjct: 183 KLVEVK 188
>gi|226507640|ref|NP_001146692.1| uncharacterized protein LOC100280293 [Zea mays]
gi|219888359|gb|ACL54554.1| unknown [Zea mays]
gi|413934065|gb|AFW68616.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
gi|413934066|gb|AFW68617.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
gi|413934067|gb|AFW68618.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
Length = 453
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED YF T+G V DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 127 STLTEDGFRQYFETFGIVTDVVVMYDQNTQRPRGFGFITFDSEDAVDRVLQK-TFHDLGG 185
Query: 405 ARVLVK 410
V VK
Sbjct: 186 KLVEVK 191
>gi|224285299|gb|ACN40374.1| unknown [Picea sitchensis]
Length = 520
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 247 ARRGNPISIASLPM--------LYYEKYGKVLQAGGYL-TESQRHGKAGYSLTKLLARLK 297
+R G I + +P+ LY+ ++G+VL A YL ++++ G+ A
Sbjct: 269 SRMGRKIFVGRIPVEATAEDLQLYFSQFGQVLDA--YLPKDAKKISHRGFGFVTF-AEES 325
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVS 357
+ + R H ++A D L+ P G + P E+T +D+
Sbjct: 326 TAEHVSQRRHEILGHLIAVDRASPLDETPSVGVYAPSGLGKKIFIGRIPVEAT--TEDLR 383
Query: 358 NYFNTYGPVDDVRIPCQQKRM----FGFVTFASADTVKMILAKGNPHFVCGARVLV 409
YF+ YG + DV +P K++ FGFVTFA + + K H + G R+ V
Sbjct: 384 LYFSQYGRILDVYLPKDAKKISHRGFGFVTFAEESAAEHVAQKA--HEILGHRIAV 437
>gi|329112539|ref|NP_001192271.1| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 350
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMDEVDASMAARPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E + PG VT +++++ E T E + YF YG ++ + I + KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIESIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
FGFVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + NY+ +G + D +R P ++ R FGFVTF+S D V +A PH + G
Sbjct: 21 TEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMA-ARPHTIDGR-- 77
Query: 408 LVKPYR 413
+V+P R
Sbjct: 78 VVEPKR 83
>gi|134024345|gb|AAI35351.1| hnrpa2b1 protein [Xenopus (Silurana) tropicalis]
Length = 349
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMDEVDASMAARPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KR 377
R E + PG VT +++++ E T E + YF YG ++ + I + KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIESIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
FGFVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + NY+ +G + D +R P ++ R FGFVTF+S D V +A PH + G
Sbjct: 21 TEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMA-ARPHTIDGR-- 77
Query: 408 LVKPYR 413
+V+P R
Sbjct: 78 VVEPKR 83
>gi|221220742|gb|ACM09032.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 320 KYLENRNERSDPGPIVTGSRQIYLTFPAESTF--------TEDDVSNYFNTYGPVDDVRI 371
K LE + R D I PA+ F TE+ + YF T+G ++ + +
Sbjct: 138 KVLEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVGGLNPEATEETIREYFGTFGEIESIEL 197
Query: 372 PC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
P +++R F F+TF TVK L K H VCG +V
Sbjct: 198 PVDLKFKKRRGFIFITFKEEATVKKCLEK-KFHNVCGTKV 236
>gi|183178950|gb|ACC43958.1| TAR-protein [Philodina roseola]
Length = 288
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
+R+I++ ++ T DD+ YF+ YG + DV IP + R F FVTF ++ V+ +
Sbjct: 190 ARKIFVARLPDN-ITPDDLRQYFSKYGAIKDVYIP-KPARSFAFVTFHDSNIVRQLFGT- 246
Query: 398 NPHFVCGARVLVKPYREKSK 417
H + G V V P K+K
Sbjct: 247 --HIIHGCSVTVGPAEPKNK 264
>gi|219362753|ref|NP_001137092.1| uncharacterized protein LOC100217268 [Zea mays]
gi|194698334|gb|ACF83251.1| unknown [Zea mays]
gi|323388723|gb|ADX60166.1| SNF2 transcription factor [Zea mays]
gi|413925208|gb|AFW65140.1| hypothetical protein ZEAMMB73_790427 [Zea mays]
Length = 383
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F YG V D +I ++ R FGF+ FAS V +LA GN + G
Sbjct: 124 STLTEDEFKSFFARYGTVVDHQIMFDHETKRSRGFGFIVFASEQVVDDLLANGNMVDLAG 183
Query: 405 ARVLVK 410
++V +K
Sbjct: 184 SKVEIK 189
>gi|413925207|gb|AFW65139.1| hypothetical protein ZEAMMB73_790427, partial [Zea mays]
Length = 221
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F YG V D +I ++ R FGF+ FAS V +LA GN + G
Sbjct: 124 STLTEDEFKSFFARYGTVVDHQIMFDHETKRSRGFGFIVFASEQVVDDLLANGNMVDLAG 183
Query: 405 ARVLVKPYREKSKLV 419
++V +K E + +V
Sbjct: 184 SKVSLKFIIEMTPMV 198
>gi|209154614|gb|ACI33539.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 359
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 315 AEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTF--------TEDDVSNYFNTYGPV 366
A K LE + R D I PA+ F TE+ + YF T+G +
Sbjct: 124 AASVDKVLEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVGGLNPEATEETIREYFGTFGEI 183
Query: 367 DDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+ + +P +++R F F+TF TVK L K H VCG +V
Sbjct: 184 ESIELPVDPKFKKRRGFIFITFKEESTVKKCLEK-KFHNVCGTKV 227
>gi|223646910|gb|ACN10213.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
gi|223672773|gb|ACN12568.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 320 KYLENRNERSDPGPIVTGSRQIYLTFPAESTF--------TEDDVSNYFNTYGPVDDVRI 371
K LE + R D I PA+ F TE+ + YF T+G ++ + +
Sbjct: 138 KVLEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVGGLNPEATEETIREYFGTFGEIESIEL 197
Query: 372 PC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
P +++R F F+TF TVK L K H VCG +V
Sbjct: 198 PVDPKFKKRRGFIFITFKEEATVKKCLEK-KFHNVCGTKV 236
>gi|302142161|emb|CBI19364.3| unnamed protein product [Vitis vinifera]
Length = 377
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+ KYG V++ Y+ +S R + G+ S L D+ QH + K
Sbjct: 24 YFSKYGTVVET--YIRRDSGRTPRGGFGFVTFADAASLSRALQDQQ--QHFIQGQRVEVK 79
Query: 321 YLENRNERSDPGPIVTG--SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQ 374
N+ +R+ G S++I++ S TE++ NYF +G + DV + +
Sbjct: 80 RAMNKGQRNLDGSGNNNFTSKKIFVG-GLSSNLTEEEFKNYFERFGRITDVVVMHDSATR 138
Query: 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+ R FGF+TF S ++V+ ++ + N + + G RV VK
Sbjct: 139 RPRGFGFITFESEESVEHVM-QNNFYELNGKRVEVK 173
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVTFASADTVKMILAKGNPHFVCG 404
TE + +YF+ YG V + I R FGFVTFA A ++ L HF+ G
Sbjct: 14 GAITEGLLRDYFSKYGTVVETYIRRDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQG 73
Query: 405 ARVLVK 410
RV VK
Sbjct: 74 QRVEVK 79
>gi|294897114|ref|XP_002775830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882183|gb|EER07646.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 323
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMIL 394
RQ+++ E T+D YF+ +G V+ + + R FGFVT+++ D V++++
Sbjct: 78 RQLFVGGIPEG-ITDDGFHQYFSQFGHVERAIVMTDKMTGRCRGFGFVTYSTTDEVEVVI 136
Query: 395 AKGNPHFVCGARVLV 409
KG PH + G RV V
Sbjct: 137 MKGGPHQLNGKRVDV 151
>gi|410896061|ref|XP_003961518.1| PREDICTED: speckle targeted PIP5K1A-regulated poly(A)
polymerase-like [Takifugu rubripes]
Length = 796
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
++ D++ YF +GPV DV I + K + V F+ D+++ L+ G H + G+++ VK
Sbjct: 65 ISQTDITEYFQQFGPVSDV-IMDKDKGFYAIVLFSETDSIQATLSCGE-HRLKGSKLRVK 122
Query: 411 PYREKS-KLVDRK--YQERMESPMYFSPQYVDM 440
P +K KL+ +K +Q E+ PQ +
Sbjct: 123 PREKKEFKLIPKKSDFQNLQEAFDRLKPQLCQL 155
>gi|391339574|ref|XP_003744123.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Metaseiulus occidentalis]
Length = 334
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 349 STFTE-DDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVC 403
ST TE +D+ NYF YG +++V I + +KR FGFVTF D+V ++ + + H +
Sbjct: 121 STETEAEDLRNYFGKYGSIEEVIIATERDTGRKRGFGFVTFDDYDSVDKVVLQRH-HMIK 179
Query: 404 GARVLVKPYREKSKLVDRKYQERMESP 430
G R VK K ++ K ++ P
Sbjct: 180 GKRTEVKKALSKIEMEKAKRKDSFMGP 206
>gi|444727997|gb|ELW68462.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Tupaia chinensis]
Length = 274
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFV F D V K++L K
Sbjct: 142 GFGFVPFDDHDPVGKIVLQK 161
>gi|115482462|ref|NP_001064824.1| Os10g0470900 [Oryza sativa Japonica Group]
gi|10716605|gb|AAG21903.1|AC026815_7 putative RNA binding protein [Oryza sativa Japonica Group]
gi|31432618|gb|AAP54226.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113639433|dbj|BAF26738.1| Os10g0470900 [Oryza sativa Japonica Group]
Length = 464
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S TED+ YF TYG V DV + Q+ R FGF+TF + D V +L K H + G
Sbjct: 137 SNLTEDEFRQYFQTYGVVTDVVVMYDQNTQRPRGFGFITFDAEDAVDRVLHK-TFHDLSG 195
Query: 405 ARVLVK 410
V VK
Sbjct: 196 KMVEVK 201
>gi|242064522|ref|XP_002453550.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
gi|241933381|gb|EES06526.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
Length = 391
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED++ ++F++YG V + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 155 SLTEDELKDHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 214
Query: 406 RVLVK 410
+V +K
Sbjct: 215 QVEIK 219
>gi|196476793|gb|ACG76260.1| heterogeneous nuclear ribonucleoprotein [Amblyomma americanum]
Length = 195
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRM 378
+ ++ DP P G ++I++ ES E D+ YF YGPV++V +P Q+R
Sbjct: 98 KGKQIDPKPAKARPGIKKIFVG-GLESDMPEADIKAYFEMYGPVENVELPFDKAKIQRRQ 156
Query: 379 FGFVTFASADTVKMI 393
F FVTF D+V ++
Sbjct: 157 FAFVTFEREDSVDLV 171
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 355 DVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
D+ YF+ +G V DV I + R FGFVTF + D ++ +L K PH V G ++ K
Sbjct: 47 DLREYFSKFGVVVDVNIKTDPTTGKSRGFGFVTFNAKDAIEAVL-KATPHTVKGKQIDPK 105
Query: 411 PYREK 415
P + +
Sbjct: 106 PAKAR 110
>gi|125555768|gb|EAZ01374.1| hypothetical protein OsI_23407 [Oryza sativa Indica Group]
Length = 407
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF + D V+ ++++G H + G
Sbjct: 190 SLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGK 249
Query: 406 RVLVK 410
+V +K
Sbjct: 250 QVEIK 254
>gi|85000983|ref|XP_955210.1| RNA-binding protein [Theileria annulata strain Ankara]
gi|65303356|emb|CAI75734.1| RNA-binding protein, putative [Theileria annulata]
Length = 406
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ-----KRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
T+DD+ +YF +G V D P Q + FGF++F + +++K + G PH + G
Sbjct: 124 TKDDLEDYFKKFGTVYDAYCPKQNNYSGLNKGFGFISFENEESIKKVFETG-PHVIMGRE 182
Query: 407 VLV 409
V+V
Sbjct: 183 VIV 185
>gi|296081021|emb|CBI18525.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F+ YG V++ +I + R FGF+ F S + V IL++GN + G
Sbjct: 116 STVTEDEFKDFFSKYGKVEEHQIIRDHETNRSRGFGFIIFESEEVVDEILSEGNMIDMAG 175
Query: 405 ARVLVK 410
+V +K
Sbjct: 176 TQVEIK 181
>gi|357146558|ref|XP_003574035.1| PREDICTED: uncharacterized protein LOC100832671 [Brachypodium
distachyon]
Length = 449
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ T+D+ YF T+G V DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 124 SSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHK-TFHDLGG 182
Query: 405 ARVLVK 410
V VK
Sbjct: 183 KMVEVK 188
>gi|125597614|gb|EAZ37394.1| hypothetical protein OsJ_21732 [Oryza sativa Japonica Group]
Length = 344
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF + D V+ ++++G H + G
Sbjct: 127 SLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGK 186
Query: 406 RVLVK 410
+V +K
Sbjct: 187 QVEIK 191
>gi|225460542|ref|XP_002277226.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Vitis vinifera]
Length = 348
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F+ YG V++ +I + R FGF+ F S + V IL++GN + G
Sbjct: 116 STVTEDEFKDFFSKYGKVEEHQIIRDHETNRSRGFGFIIFESEEVVDEILSEGNMIDMAG 175
Query: 405 ARVLVK 410
+V +K
Sbjct: 176 TQVEIK 181
>gi|225458908|ref|XP_002283509.1| PREDICTED: uncharacterized protein LOC100255821 [Vitis vinifera]
Length = 471
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+ KYG V++ Y+ +S R + G+ S L D+ QH + K
Sbjct: 24 YFSKYGTVVET--YIRRDSGRTPRGGFGFVTFADAASLSRALQDQQ--QHFIQGQRVEVK 79
Query: 321 YLENRNERSDPGPIVTG--SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQ 374
N+ +R+ G S++I++ S TE++ NYF +G + DV + +
Sbjct: 80 RAMNKGQRNLDGSGNNNFTSKKIFVG-GLSSNLTEEEFKNYFERFGRITDVVVMHDSATR 138
Query: 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+ R FGF+TF S ++V+ ++ + N + + G RV VK
Sbjct: 139 RPRGFGFITFESEESVEHVM-QNNFYELNGKRVEVK 173
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVTFASADTVKMILAKGNPHFVCGA 405
TE + +YF+ YG V + I R FGFVTFA A ++ L HF+ G
Sbjct: 15 AITEGLLRDYFSKYGTVVETYIRRDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQ 74
Query: 406 RVLVK 410
RV VK
Sbjct: 75 RVEVK 79
>gi|296087606|emb|CBI34862.3| unnamed protein product [Vitis vinifera]
Length = 281
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T TE++ ++F YG V D +I + R FGFVTF + V +L++GN + G
Sbjct: 138 ATVTEEEFKDFFTQYGEVKDHQIMRDHSTSRSRGFGFVTFDTEQAVDDLLSQGNKLELAG 197
Query: 405 ARVLVK 410
A+V +K
Sbjct: 198 AQVEIK 203
>gi|388500070|gb|AFK38101.1| unknown [Lotus japonicus]
gi|388508218|gb|AFK42175.1| unknown [Lotus japonicus]
Length = 373
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S TED+ ++F YG V D +I + R FGF+TF S D V +L+ GN G
Sbjct: 142 SNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
Query: 405 ARVLVK 410
+V +K
Sbjct: 202 TQVEIK 207
>gi|297606021|ref|NP_001057893.2| Os06g0566100 [Oryza sativa Japonica Group]
gi|53793272|dbj|BAD54495.1| putative Heterogeneous nuclear ribonucleoproteins A1 homolog [Oryza
sativa Japonica Group]
gi|53793315|dbj|BAD54536.1| putative Heterogeneous nuclear ribonucleoproteins A1 homolog [Oryza
sativa Japonica Group]
gi|215765227|dbj|BAG86924.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677149|dbj|BAF19807.2| Os06g0566100 [Oryza sativa Japonica Group]
Length = 285
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF + D V+ ++++G H + G
Sbjct: 68 SLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGK 127
Query: 406 RVLVK 410
+V +K
Sbjct: 128 QVEIK 132
>gi|2582639|emb|CAA05398.1| hnRNP-like protein [Arabidopsis thaliana]
Length = 452
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE + NYF+ +G + DV + Q+ R FGF+TF S ++V M+L K H + G
Sbjct: 58 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNG 116
Query: 405 ARVLVK 410
V VK
Sbjct: 117 KMVEVK 122
>gi|427797245|gb|JAA64074.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 517
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+E +G+VL A + + + G++ G+ + + ++ VR + + H L + +
Sbjct: 158 YFETFGEVLMA--QVKKDPKTGQSKGFGFIRF-SSYESQVRALSKRH------LIDG--R 206
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
+ + + S G SR++++ E + DD+ +YF+ YG V DV IP + R F
Sbjct: 207 WCDVKIPNSKDGQASELSRKVFVGRCTED-LSSDDLRDYFSKYGEVTDVFIP-KPFRAFA 264
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
FVTF D + + G H + G + V KS+
Sbjct: 265 FVTFVDPDVAQSLC--GEDHIIRGTSIHVSNAVPKSE 299
>gi|195628644|gb|ACG36152.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 384
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED++ ++F++YG V + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 154 SLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 213
Query: 406 RVLVK 410
+V +K
Sbjct: 214 QVEIK 218
>gi|4938503|emb|CAB43861.1| hnRNP-like protein [Arabidopsis thaliana]
gi|7269517|emb|CAB79520.1| hnRNP-like protein [Arabidopsis thaliana]
Length = 524
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE + NYF+ +G + DV + Q+ R FGF+TF S ++V M+L K H + G
Sbjct: 124 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNG 182
Query: 405 ARVLVK 410
V VK
Sbjct: 183 KMVEVK 188
>gi|363807276|ref|NP_001242362.1| uncharacterized protein LOC100793209 [Glycine max]
gi|255636483|gb|ACU18580.1| unknown [Glycine max]
Length = 377
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S TED+ ++F YG V D +I + R FGF+TF S + V +L+ GN G
Sbjct: 139 SNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVDDLLSMGNKIDFAG 198
Query: 405 ARVLVK 410
A+V +K
Sbjct: 199 AQVEIK 204
>gi|414878425|tpg|DAA55556.1| TPA: putative RNA-binding zinc finger family protein [Zea mays]
Length = 430
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 396 KGNPHFVCGARVLVKPYREKSKLVDR 421
+GNPHFVC RVLVKPY+EK K+ R
Sbjct: 361 QGNPHFVCDVRVLVKPYKEKGKVPGR 386
>gi|452822102|gb|EME29125.1| RNA-binding protein [Galdieria sulphuraria]
Length = 639
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 353 EDDVSNYFNTYGPV-------DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
E++V+ YF ++GPV D V C R +GFV F A+ +L G CG
Sbjct: 38 EEEVTLYFQSFGPVKRCLVIQDAVTGHC---RGYGFVKFQRAEDAAKVLECGQRLVFCGQ 94
Query: 406 RVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQ 465
R+LV ++K D+ Q+ ++P + +P+ S+L +G KQLL+ +
Sbjct: 95 RILVDYALRRTK-TDKSDQQEEDTP-WVAPK----SSKLLGLGKGTSA-----KQLLDSK 143
Query: 466 EQAFELERRRLAELQLVRKPMPNPPYFGGYMDGL 499
+ +A+ ++ KP+ P+ + + L
Sbjct: 144 ---VSRNSQDIAKRTILIKPVLQVPWLQQFKELL 174
>gi|224114443|ref|XP_002316761.1| predicted protein [Populus trichocarpa]
gi|222859826|gb|EEE97373.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDA 318
Y+ KYG+V++A + + G+A G+ + A L + R+I H V +
Sbjct: 25 YFSKYGEVVEA--VIMRDRATGRARGFGFV-VFADLTVAERVIMEKHVIDGRTVEAKKAV 81
Query: 319 PK---YLENR---NERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
P+ ++ +R N PGP T ++I++ A ST TE++ YF YG + DV +
Sbjct: 82 PRDDQHILSRSISNIHGSPGPGRT--KKIFVGGLA-STVTENEFKKYFEQYGIIIDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYDSEEAVDRVLHK-TFHELNGKMVEVK 179
>gi|147795790|emb|CAN67607.1| hypothetical protein VITISV_004303 [Vitis vinifera]
Length = 507
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 262 YYEKYGKVLQAGGYLT-ESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+ KYG V++ Y+ +S R + G+ S L D+ QH + K
Sbjct: 24 YFSKYGTVVET--YIRRDSGRTPRGGFGFVTFADAASLSRALQDQQ--QHFIQGQRVEVK 79
Query: 321 YLENRNERSDPGPIVTG--SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQ 374
N+ +R+ G S++I++ S TE++ NYF +G + DV + +
Sbjct: 80 RAMNKGQRNLDGSGNNNFTSKKIFVGG-LSSNLTEEEFKNYFERFGRITDVVVMHDSATR 138
Query: 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+ R FGF+TF S ++V+ ++ + N + + G RV VK
Sbjct: 139 RPRGFGFITFESEESVEHVM-QNNFYELNGKRVEVK 173
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVTFASADTVKMILAKGNPHFVCGA 405
TE + +YF+ YG V + I R FGFVTFA A ++ L HF+ G
Sbjct: 15 AITEGLLRDYFSKYGTVVETYIRRDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQ 74
Query: 406 RVLVK 410
RV VK
Sbjct: 75 RVEVK 79
>gi|413948586|gb|AFW81235.1| putative RNA-binding zinc finger family protein [Zea mays]
Length = 265
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 396 KGNPHFVCGARVLVKPYREKSKLVDR 421
+GNPHFVC RVLVKPY+EK K+ R
Sbjct: 196 QGNPHFVCDVRVLVKPYKEKGKVPGR 221
>gi|356558851|ref|XP_003547716.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Glycine
max]
Length = 372
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F YG V D +I + R FGF+T+ S + V +L+ GN G
Sbjct: 141 STVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLSVGNKIEFAG 200
Query: 405 ARVLVK 410
A+V +K
Sbjct: 201 AQVEIK 206
>gi|18416794|ref|NP_567753.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930503|gb|AAL31937.1|AF419605_1 AT4g26650/T15N24_100 [Arabidopsis thaliana]
gi|20453245|gb|AAM19861.1| AT4g26650/T15N24_100 [Arabidopsis thaliana]
gi|332659832|gb|AEE85232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 455
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE + NYF+ +G + DV + Q+ R FGF+TF S ++V M+L K H + G
Sbjct: 131 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNG 189
Query: 405 ARVLVK 410
V VK
Sbjct: 190 KMVEVK 195
>gi|79325275|ref|NP_001031725.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332659833|gb|AEE85233.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 452
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE + NYF+ +G + DV + Q+ R FGF+TF S ++V M+L K H + G
Sbjct: 128 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNG 186
Query: 405 ARVLVK 410
V VK
Sbjct: 187 KMVEVK 192
>gi|102140031|gb|ABF70162.1| RNA-binding protein, putative [Musa acuminata]
Length = 465
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDRPHGQHAVILA 315
Y+ +G+V++A + + + G+A G+ + R+ ID + +
Sbjct: 25 YFSAFGEVVEA--VIMKDRTTGRARGFGFVVFADPAVTERVVTEKHTIDGRMVEAKKAVP 82
Query: 316 EDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI---- 371
D ++L + S G V G + ST TE D YF+ +G + DV +
Sbjct: 83 RDDHQFLNKNSSSSIHGSPVPGHTKKIFVGGLSSTITEGDFKKYFDQFGTITDVVVMYDH 142
Query: 372 PCQQKRMFGFVTFASADTVKMIL 394
Q+ R FGF+T+ S D V +L
Sbjct: 143 NTQRPRGFGFITYDSEDAVDKVL 165
>gi|47218115|emb|CAG09987.1| unnamed protein product [Tetraodon nigroviridis]
Length = 419
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 298 NSVRLID-----RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFT 352
+S+R +D RPH ++ PK +R + + PG ++ ++I++ E T
Sbjct: 56 SSLREVDEAMKARPHKVDGRVVE---PKRAVSREDSNKPGAHLS-VKKIFVGGIKEDT-E 110
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAK 396
ED + +YF YG ++ V I +KR F FVTF DTV I+A+
Sbjct: 111 EDQIRDYFEKYGKIECVDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 158
>gi|297803432|ref|XP_002869600.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297315436|gb|EFH45859.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE + NYF+ +G + DV + Q+ R FGF+TF S ++V M+L K H + G
Sbjct: 131 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNG 189
Query: 405 ARVLVK 410
V VK
Sbjct: 190 KMVEVK 195
>gi|356571134|ref|XP_003553735.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
2-like [Glycine max]
Length = 374
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ ++F YG V D +I + R FGF+T+ S + V +L+ GN G
Sbjct: 143 STVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLSVGNKIEFAG 202
Query: 405 ARVLVK 410
A+V +K
Sbjct: 203 AQVEIK 208
>gi|427777737|gb|JAA54320.1| Putative glycine rich protein [Rhipicephalus pulchellus]
Length = 355
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRM 378
+ ++ DP P G ++I++ ES E D+ YF +GPV++V +P Q+R
Sbjct: 127 KGKQIDPKPAKARPGIKKIFVG-GLESDMPEADIKAYFEKFGPVENVELPFDKAKNQRRQ 185
Query: 379 FGFVTFASADTVKMI 393
F FVTF D+V+++
Sbjct: 186 FAFVTFEREDSVELV 200
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 355 DVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
D+ YF+ +G V DV I + R FGFVTF + D ++ +L K PH V G ++ K
Sbjct: 76 DLREYFSKFGVVVDVNIKTDPTTGKSRGFGFVTFNAKDAIEAVL-KATPHTVKGKQIDPK 134
Query: 411 PYREK 415
P + +
Sbjct: 135 PAKAR 139
>gi|255582445|ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223528341|gb|EEF30383.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 484
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHA-VILAEDA- 318
Y+ +G+V++A + + + G+A G+ + A + R+I H ++ A+ A
Sbjct: 25 YFGSFGEVVEA--VIMKDRTTGRARGFGFV-VFADAAVAERVIMEKHNIDGRMVEAKKAV 81
Query: 319 PKYLENRNERS-------DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI 371
P+ +N RS PGP T R+I++ A ST TE D YF YG + DV +
Sbjct: 82 PRDDQNILNRSTGSSIHGSPGPGRT--RKIFVGGLA-STVTETDFRKYFEQYGTITDVVV 138
Query: 372 ----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 MYDHNTQRPRGFGFITYDSEEAVDKVLMK-TFHELNGKMVEVK 180
>gi|350015551|dbj|GAA42894.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Clonorchis
sinensis]
Length = 292
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T DD++ YF YG V D +I R F FVTF D+V K+ILA+ PH + G +
Sbjct: 115 TNDDLAEYFGQYGTVTDAQIVMAKDTNTSRGFAFVTFDDTDSVDKVILAR--PHTINGHK 172
Query: 407 VLVK 410
V+
Sbjct: 173 ADVR 176
>gi|238007140|gb|ACR34605.1| unknown [Zea mays]
gi|413926095|gb|AFW66027.1| hypothetical protein ZEAMMB73_185087 [Zea mays]
Length = 366
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED++ ++F++YG V + +I + R FGF+TF S D+V+ ++++G + G
Sbjct: 136 SLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGK 195
Query: 406 RVLVK 410
+V +K
Sbjct: 196 QVEIK 200
>gi|241627626|ref|XP_002408070.1| RNA-binding protein musashi, putative [Ixodes scapularis]
gi|215501115|gb|EEC10609.1| RNA-binding protein musashi, putative [Ixodes scapularis]
Length = 353
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 325 RNERSDPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRM 378
+ ++ DP P G ++I++ ES E D+ YF +GPV++V +P Q+R
Sbjct: 127 KGKQIDPKPAKARPGIKKIFVG-GLESDMPEADIKAYFEKFGPVENVELPFDKAKNQRRQ 185
Query: 379 FGFVTFASADTVKMIL 394
F FVTF D+V+++
Sbjct: 186 FAFVTFEREDSVELVC 201
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 355 DVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
D+ YF+ +G V DV I + R FGFVTF + + ++ +L K PH V G ++ K
Sbjct: 76 DLREYFSKFGVVVDVNIKTDPTTGKSRGFGFVTFTAKEAIEAVL-KATPHTVKGKQIDPK 134
Query: 411 PYREK 415
P + +
Sbjct: 135 PAKAR 139
>gi|326489793|dbj|BAK01877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 463
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--------GQHAV 312
Y+EKYG+V++A + + G+A G+ + A + R+I H + AV
Sbjct: 25 YFEKYGEVVEA--VIMRDRATGRARGFGFI-VFADPAVAERVIMEKHMIDGRMVEAKKAV 81
Query: 313 ILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
+ + PGP T ++I++ A ST TE D YF +G + DV +
Sbjct: 82 PRDDQQALSKSGGSAHGSPGPSRT--KKIFVGGLA-STVTEADFRTYFEQFGTITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYDSEDAVDKALFK-TFHELNGKMVEVK 179
>gi|239051430|ref|NP_001131946.2| uncharacterized protein LOC100193339 [Zea mays]
gi|194695014|gb|ACF81591.1| unknown [Zea mays]
gi|223947685|gb|ACN27926.1| unknown [Zea mays]
gi|238908636|gb|ACF80580.2| unknown [Zea mays]
gi|413926096|gb|AFW66028.1| heterogeneous nuclear ribonucleoprotein A3 isoform 1 [Zea mays]
gi|413926097|gb|AFW66029.1| heterogeneous nuclear ribonucleoprotein A3 isoform 2 [Zea mays]
gi|413926098|gb|AFW66030.1| heterogeneous nuclear ribonucleoprotein A3 isoform 3 [Zea mays]
Length = 384
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED++ ++F++YG V + +I + R FGF+TF S D+V+ ++++G + G
Sbjct: 154 SLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGK 213
Query: 406 RVLVK 410
+V +K
Sbjct: 214 QVEIK 218
>gi|66358802|ref|XP_626579.1| RRM domain containing protein [Cryptosporidium parvum Iowa II]
gi|46228014|gb|EAK88934.1| RRM domain containing protein [Cryptosporidium parvum Iowa II]
Length = 199
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCG 404
+T ++D + YF +G + D + C +K R FGFVTF S V I+ + H++ G
Sbjct: 94 TTCSQDILRKYFEQFGQISDCVMMCDKKSGIGRGFGFVTFTSTSVVDEIIRAYDEHYIDG 153
Query: 405 ARVLVK 410
V VK
Sbjct: 154 QWVEVK 159
>gi|156361860|ref|XP_001625502.1| predicted protein [Nematostella vectensis]
gi|156212338|gb|EDO33402.1| predicted protein [Nematostella vectensis]
Length = 126
Score = 43.9 bits (102), Expect = 0.21, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+V R+I++ A ST T++ + YF +G V D + ++ R FGFVTF T
Sbjct: 9 VVVFFRKIFVGGLATST-TKEGLHQYFENFGEVTDCVLMTDPTTKRSRGFGFVTFRDPAT 67
Query: 390 VKMILAKGNPHFVCGARVLVKPYR 413
++ +LAK PH + G + KP R
Sbjct: 68 IESVLAK-KPHILDGKTIDPKPAR 90
>gi|403221237|dbj|BAM39370.1| uncharacterized protein TOT_010000827 [Theileria orientalis strain
Shintoku]
Length = 326
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
T T + + +YF ++G V + + + R FGFVTFAS D+V+ +L++ H V
Sbjct: 66 TTTAEQLRSYFESFGKVTETEVVKDKITGRSRGFGFVTFASNDSVQRVLSQ--EHTVNDV 123
Query: 406 RVLVK--PYREKSKLVDRKYQE 425
+V VK +EKSK++ KY +
Sbjct: 124 QVEVKLAVRKEKSKILAPKYDQ 145
>gi|401405877|ref|XP_003882388.1| putative RNA binding protein [Neospora caninum Liverpool]
gi|325116803|emb|CBZ52356.1| putative RNA binding protein [Neospora caninum Liverpool]
Length = 1060
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
++E D+ +F+ YGPV RI + R FGFV+FA+ + N V G R
Sbjct: 798 WSEHDLLTHFSVYGPVLSARIASDRLSGRNRGFGFVSFANGQAAAAAVTAMNGFQVNGKR 857
Query: 407 VLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGC 451
+ K+ +K +E+ ++ +P DS HS S C
Sbjct: 858 L---------KVQIKKGEEQYAHNLHLTPCSNGTDSTWHSVSASC 893
>gi|405965286|gb|EKC30669.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 380
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
SR++++ E T DD+ +YF+ YG V DV IP + R F FVTFA + + G
Sbjct: 169 SRKVFVARCTED-ITADDLKSYFSKYGEVSDVFIP-KPFRAFAFVTFADHRIARSLC--G 224
Query: 398 NPHFVCGARVLV 409
H + GA V V
Sbjct: 225 EDHIIKGASVHV 236
>gi|222423819|dbj|BAH19875.1| AT4G26650 [Arabidopsis thaliana]
Length = 452
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE + NYF+ +G + DV + Q+ R FGF+TF S ++V M+L K H + G
Sbjct: 128 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNG 186
Query: 405 ARVLVK 410
+ VK
Sbjct: 187 KMIEVK 192
>gi|395324233|gb|EJF56678.1| RNA-binding protein Prp24 [Dichomitus squalens LYAD-421 SS1]
Length = 1028
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 323 ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK---RMF 379
E R ER+D R++Y+ ++ T++D+ N F TYG V DVR+ K + F
Sbjct: 769 ERRKERTDSD---ADDREVYVAGLSK-LVTKEDLENLFKTYGTVKDVRMILDDKGRSKGF 824
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMY 432
FV F + + + LA N +K R L D + + + ++P Y
Sbjct: 825 AFVEFETENDARAALAANNHE--------LKQRRMAVTLADSRVRAKNKAPGY 869
>gi|213513508|ref|NP_001134615.1| Heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Salmo salar]
gi|209734656|gb|ACI68197.1| Heterogeneous nuclear ribonucleoprotein A3 homolog 2 [Salmo salar]
Length = 339
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 302 LIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+ RPH ++ PK +R + + PG +T ++I++ E T ED + YF
Sbjct: 71 MAARPHKVDGRVVE---PKRAVSREDSNRPGAHLT-VKKIFVGGIKEDT-REDHIREYFE 125
Query: 362 TYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAK 396
TYG ++ + I +KR F FV+F DTV I+A+
Sbjct: 126 TYGRIETIDIMEERATGKKRGFCFVSFDDNDTVDKIVAQ 164
>gi|413926094|gb|AFW66026.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 443
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED++ ++F++YG V + +I + R FGF+TF S D+V+ ++++G + G
Sbjct: 213 SLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGK 272
Query: 406 RVLVK 410
+V +K
Sbjct: 273 QVEIK 277
>gi|427795623|gb|JAA63263.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+E +G+VL A + + + G++ G+ + + ++ VR + + H L + +
Sbjct: 61 YFETFGEVLMA--QVKKDPKTGQSKGFGFIRF-SSYESQVRALSKRH------LIDG--R 109
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
+ + + S G SR++++ E + DD+ +YF+ YG V DV IP + R F
Sbjct: 110 WCDVKIPNSKDGQASELSRKVFVGRCTED-LSSDDLRDYFSKYGEVTDVFIP-KPFRAFA 167
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
FVTF D + + G H + G + V KS+
Sbjct: 168 FVTFVDPDVAQSLC--GEDHIIRGTSIHVSNAVPKSE 202
>gi|410896922|ref|XP_003961948.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Takifugu rubripes]
Length = 336
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + + PG ++ ++I++ E T ED + +YF YG
Sbjct: 74 RPHKVDGRVVE---PKRAVSREDSNKPGAHLS-VKKIFVGGIKEDT-EEDQIRDYFEKYG 128
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAK 396
++ V I +KR F FVTF DTV I+A+
Sbjct: 129 KIECVDIMEERSSGKKRGFCFVTFDDHDTVDKIVAQ 164
>gi|326470511|gb|EGD94520.1| pre-mRNA splicing factor (Prp24) [Trichophyton tonsurans CBS 112818]
Length = 1279
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 339 RQIYL-TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMIL 394
R+IY+ P ++T E D+ F YG V+ VRIP + + R FGFVTFA+ D L
Sbjct: 962 REIYVCNIPYKTT--EGDLVELFTAYGDVESVRIPTKVNGETRGFGFVTFATKDQSTAAL 1019
Query: 395 AKGNPHF 401
A F
Sbjct: 1020 AMNEKTF 1026
>gi|94482853|gb|ABF22468.1| heterogeneous nuclear ribonucleoprotein A3 [Takifugu rubripes]
Length = 341
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + + PG ++ ++I++ E T ED + +YF YG
Sbjct: 79 RPHKVDGRVVE---PKRAVSREDSNKPGAHLS-VKKIFVGGIKEDT-EEDQIRDYFEKYG 133
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAK 396
++ V I +KR F FVTF DTV I+A+
Sbjct: 134 KIECVDIMEERSSGKKRGFCFVTFDDHDTVDKIVAQ 169
>gi|156382516|ref|XP_001632599.1| predicted protein [Nematostella vectensis]
gi|156219657|gb|EDO40536.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFAS 386
P P++ +R +++ A T TE ++ +F+ +GPV DVRI C ++ + FGF+TF+
Sbjct: 10 PEPVIYPTR-VFVGGLARGT-TELELETFFSNFGPVADVRIVCDRRTGLNKGFGFITFSL 67
Query: 387 ADTVKMILAKGNPHFVCGARVLVKPYREKSK---LVDRKYQERMES 429
+ K ++ + N F + L + R+K L + +Y ++ S
Sbjct: 68 EEPAKKLIEQNNIDFKGRSLRLRQAIRKKGSSQYLTNEEYSQKKGS 113
>gi|224089693|ref|XP_002308799.1| predicted protein [Populus trichocarpa]
gi|222854775|gb|EEE92322.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDRPHGQHAVILA 315
Y+ +G+VL+A + + + G+A G+ + R+ LID + + +
Sbjct: 25 YFRAFGEVLEA--VIMKDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVEAKKAVP 82
Query: 316 EDAPKYLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
+ L N+N S PGP T ++I++ A ST TE D YF+ +G + DV +
Sbjct: 83 REDQNTL-NKNSSSVNGSPGPART--KKIFVGGLA-STVTESDFRKYFDQFGVITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYDSEEAVDRVLHK-TFHELNGKMVEVK 179
>gi|440897852|gb|ELR49462.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Bos
grunniens mutus]
Length = 349
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 349 STFTEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCG 404
S TE+ + NY+ +G + D +R P QK R FGF+TF+S + +A PHF+ G
Sbjct: 29 SETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA-RPHFIDG 87
Query: 405 ARVLVK---PYREKSKL 418
V+ K P + KL
Sbjct: 88 KMVMPKRAVPREDHGKL 104
>gi|357482897|ref|XP_003611735.1| RNA-binding protein [Medicago truncatula]
gi|355513070|gb|AES94693.1| RNA-binding protein [Medicago truncatula]
Length = 403
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVTFAS---ADT 389
S++I++ P E+ +D+ YF +G ++DV IP KR FGFVTFA AD
Sbjct: 230 SKKIFVGRLPPEAN--SEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADR 287
Query: 390 VKMILAKGNPHFVCGARVLV 409
V + PH +CG V +
Sbjct: 288 VSL-----RPHEICGHEVAI 302
>gi|357521485|ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
gi|355525053|gb|AET05507.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
Length = 476
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T R+I++ A ST TE D YF+ +G + DV + Q+ R FGF+T+ S
Sbjct: 83 PGPGRT--RKIFVGGLA-STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 139
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V +L K H + G V VK
Sbjct: 140 EEAVDQVLLK-TFHELNGKMVEVK 162
>gi|357495375|ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Medicago truncatula]
gi|355519311|gb|AET00935.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Medicago truncatula]
Length = 479
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T R+I++ A ST TE D YF+ +G + DV + Q+ R FGF+T+ S
Sbjct: 100 PGPGRT--RKIFVGGLA-STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V +L K H + G V VK
Sbjct: 157 EEAVDQVLLK-TFHELNGKMVEVK 179
>gi|296490076|tpg|DAA32189.1| TPA: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
taurus]
Length = 361
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 349 STFTEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCG 404
S TE+ + NY+ +G + D +R P QK R FGF+TF+S + +A PHF+ G
Sbjct: 30 SETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMA-ARPHFIDG 88
Query: 405 ARVLVK---PYREKSKL 418
V+ K P + KL
Sbjct: 89 KMVMPKRAVPREDHGKL 105
>gi|326478692|gb|EGE02702.1| pre-mRNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 1545
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 339 RQIYL-TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMIL 394
R+IY+ P ++T E D+ F YG V+ VRIP + + R FGFVTFA+ D L
Sbjct: 968 REIYVCNIPYKTT--EGDLVELFTAYGDVESVRIPTKVNGETRGFGFVTFATKDQSTAAL 1025
Query: 395 AKGNPHF 401
A F
Sbjct: 1026 AMNEKTF 1032
>gi|396475683|ref|XP_003839845.1| hypothetical protein LEMA_P112850.1 [Leptosphaeria maculans JN3]
gi|312216415|emb|CBX96366.1| hypothetical protein LEMA_P112850.1 [Leptosphaeria maculans JN3]
Length = 877
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 186 CHYFNKGFCKHGSNCRYYHGLVSE 209
CH+F +G CK+G++CRY HG V E
Sbjct: 796 CHFFQRGSCKNGASCRYVHGRVGE 819
>gi|356551592|ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795907 [Glycine max]
Length = 479
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA-P 319
Y+ YG+V++A + + + G+A G+ + + ++ + ++ A+ A P
Sbjct: 25 YFSTYGEVVEA--VIMKDRTTGRARGFGFVVFSDPAIAEIVIKEKHNIDGRMVEAKKAVP 82
Query: 320 KYLEN---RNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
+ +N RN S PGP T R+I++ A ST TE D YF+ +G + DV +
Sbjct: 83 RDDQNILSRNSGSIHGSPGPGRT--RKIFVGGLA-STVTESDFKKYFDQFGTITDVVVMY 139
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVK 179
>gi|346466281|gb|AEO32985.1| hypothetical protein [Amblyomma maculatum]
Length = 321
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 330 DPGPIVT--GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVT 383
DP P G ++I++ ES E D+ YF +GPV++V +P Q+R F FVT
Sbjct: 103 DPKPAKARPGIKKIFVG-GLESDMPEADIKAYFEKFGPVENVELPFDKAKNQRRQFAFVT 161
Query: 384 FASADTVKMI 393
F D+V ++
Sbjct: 162 FEREDSVDLV 171
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 355 DVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
D+ YF+ +G V DV I + R FGFVTF + D ++ +L K PH V G ++ K
Sbjct: 47 DLREYFSKFGVVVDVNIKTDPTTGKSRGFGFVTFNAKDAIEAVL-KATPHTVKGKQIDPK 105
Query: 411 PYREK 415
P + +
Sbjct: 106 PAKAR 110
>gi|119614244|gb|EAW93838.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_d [Homo
sapiens]
gi|119614246|gb|EAW93840.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_d [Homo
sapiens]
gi|119614247|gb|EAW93841.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_d [Homo
sapiens]
Length = 301
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 286 GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTF 345
G+ + + + RPH ++ PK R E PG VT +++++
Sbjct: 11 GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKRAVAREESGKPGAHVT-VKKLFVGG 66
Query: 346 PAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAK 396
E T E + +YF YG +D + I +KR FGFVTF D V K++L K
Sbjct: 67 IKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 121
>gi|403283527|ref|XP_003933170.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Saimiri boliviensis boliviensis]
Length = 299
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH H ++ PK +R + PG +T ++I+L E T E + +YF YG
Sbjct: 75 RPHKVHGRVVE---PKRAVSREDSQRPGAHLT-VKKIFLGGIKEDT-EEHHLRDYFEQYG 129
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ + I +KR F FV F D+V MI+ + H V G V+ K ++
Sbjct: 130 KIEVIEIITDRGSGKKRGFAFVAFDDHDSVDMIVIQ-KYHTVNGHNCEVRKALSKQEMA 187
>gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis]
Length = 949
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T ED YF +G VDD + ++ R FGF+TFA ++V + A+G +
Sbjct: 111 ATVDEDTFRAYFEEFGLVDDAVVMFDHENKRPRGFGFITFADEESVDAVFARGTIQTIHD 170
Query: 405 ARVLVKPYREKSKLVDRKYQERMESPMY----FSPQYVDMDSELHSFSRG 450
++ +K + + + SPM P Y M E++ RG
Sbjct: 171 KQIEIKRAVPRDSMPPSPRALQHRSPMAHHPGVPPAYDHMPPEMYHHRRG 220
>gi|344238619|gb|EGV94722.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Cricetulus griseus]
Length = 282
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 302 LIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+ RPH ++ PK R E PG VT +++++ E T E + +YF
Sbjct: 8 MAARPHSIDGRVVE---PKRAVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFE 62
Query: 362 TYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAK 396
YG +D + I +KR FGFVTF D V K++L K
Sbjct: 63 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 102
>gi|307006509|gb|ADN23539.1| RNA-binding protein musashi subunit HRP1 [Hyalomma marginatum
rufipes]
Length = 208
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMIL 394
ES E D+ YF +GPV++V +P Q+R F FVTF D+V+++
Sbjct: 4 ESDMPEADIKAYFEKFGPVENVELPFDKARNQRRQFTFVTFEREDSVELVC 54
>gi|214241|gb|AAA49742.1| ribonucleoprotein A1b [Xenopus laevis]
Length = 351
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 286 GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTF 345
G+ L+ + + RPH ++ PK +R + S PG +T ++I++
Sbjct: 56 GFGFVTYLSTDEVDAAMTARPHKVDGRVVE---PKRAVSREDSSRPGAHLT-VKKIFVGG 111
Query: 346 PAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMIL 394
E T ED + YF YG ++ + I +KR F FVTF D+V I+
Sbjct: 112 IKEDT-EEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>gi|359488807|ref|XP_002272790.2| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis
vinifera]
Length = 2363
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T TE++ ++F YG V D +I + R FGFVTF + V +L++GN + G
Sbjct: 2125 ATVTEEEFKDFFTQYGEVKDHQIMRDHSTSRSRGFGFVTFDTEQAVDDLLSQGNKLELAG 2184
Query: 405 ARVLVK 410
A+V +K
Sbjct: 2185 AQVEIK 2190
>gi|449443534|ref|XP_004139532.1| PREDICTED: uncharacterized protein LOC101217028 [Cucumis sativus]
gi|449505564|ref|XP_004162509.1| PREDICTED: uncharacterized LOC101217028 [Cucumis sativus]
Length = 477
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T ++I++ A ST TE D YF+ +G + DV + Q+ R FGF+T+ S
Sbjct: 98 PGPTRT--KKIFVGGLA-STVTESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYES 154
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
++V+ +L K H + G V VK
Sbjct: 155 EESVEKVLYK-TFHELNGKMVEVK 177
>gi|133258|sp|P17130.1|ROA1_XENLA RecName: Full=Heterogeneous nuclear ribonucleoproteins A1 homolog;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|214239|gb|AAA49741.1| ribonucleoprotein A1a [Xenopus laevis]
Length = 365
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 286 GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTF 345
G+ L+ + + RPH ++ PK +R + S PG +T ++I++
Sbjct: 56 GFGFVTYLSTDEVDAAMTARPHKVDGRVVE---PKRAVSREDSSRPGAHLT-VKKIFVGG 111
Query: 346 PAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMIL 394
E T ED + YF YG ++ + I +KR F FVTF D+V I+
Sbjct: 112 IKEDT-EEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>gi|340730016|ref|XP_003403287.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Bombus
terrestris]
Length = 169
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
Q+ I+A +P + N DPG + G + T P + + YF YG + +
Sbjct: 4 QNQEIVASGSPAEVPN-----DPGKMFIGGLS-WQTSP-------ESLREYFTKYGDITE 50
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK---PYREKSKLVDR 421
V I ++ R FGF+TFA +V +LA+GN H + G ++ K P R K+V R
Sbjct: 51 VMIMKDPTTRRSRGFGFITFADPASVDKVLAQGN-HELDGKKIDPKVAFPRRTHPKMVTR 109
>gi|401401107|ref|XP_003880933.1| hypothetical protein NCLIV_039750 [Neospora caninum Liverpool]
gi|325115345|emb|CBZ50900.1| hypothetical protein NCLIV_039750 [Neospora caninum Liverpool]
Length = 502
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
+ +E DV YF +G VD V I + R FGFV FAS D+VK +L
Sbjct: 211 SLSESDVEKYFAKFGTVDKVSIIRDATTGKSRGFGFVVFASEDSVKEVL 259
>gi|209882765|ref|XP_002142818.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209558424|gb|EEA08469.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 211
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCG 404
+T ++D + YF +G + D + C +K R FGFVTF S V I+ + H++ G
Sbjct: 107 TTCSQDILRRYFEQFGQISDCVMMCDKKSGVGRGFGFVTFTSTSIVDDIIRAYDEHYIDG 166
Query: 405 ARVLVK 410
V VK
Sbjct: 167 QWVEVK 172
>gi|115445085|ref|NP_001046322.1| Os02g0221500 [Oryza sativa Japonica Group]
gi|46806500|dbj|BAD17624.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806519|dbj|BAD17632.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|113535853|dbj|BAF08236.1| Os02g0221500 [Oryza sativa Japonica Group]
Length = 397
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 338 SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKM 392
+R+I++ P S+ TED++ +F+ YG + + +I + R FGFVTF S D+V+
Sbjct: 154 TRKIFVGGLP--SSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVER 211
Query: 393 ILAKGNPHFVCGARVLVK 410
++++G + G +V +K
Sbjct: 212 VISEGRMRDLGGKQVEIK 229
>gi|147900728|ref|NP_001081282.1| heterogeneous nuclear ribonucleoproteins A1 homolog [Xenopus
laevis]
gi|47938744|gb|AAH72090.1| LOC397751 protein [Xenopus laevis]
Length = 365
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 286 GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTF 345
G+ L+ + + RPH ++ PK +R + S PG +T ++I++
Sbjct: 56 GFGFVTYLSTDEVDAAMTARPHKVDGRVVE---PKRAVSREDSSRPGAHLT-VKKIFVGG 111
Query: 346 PAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMIL 394
E T ED + YF YG ++ + I +KR F FVTF D+V I+
Sbjct: 112 IKEDT-EEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>gi|356501721|ref|XP_003519672.1| PREDICTED: uncharacterized protein LOC100799330 [Glycine max]
Length = 475
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T R+I++ A ST TE D YF+ +G + DV + Q+ R FGF+T+ S
Sbjct: 100 PGPGRT--RKIFVGGLA-STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V +L K H + G V VK
Sbjct: 157 EEAVDKVLLK-TFHELNGKMVEVK 179
>gi|115438775|ref|NP_001043667.1| Os01g0636700 [Oryza sativa Japonica Group]
gi|55297587|dbj|BAD68933.1| DNA repair helicase ERCC6-like [Oryza sativa Japonica Group]
gi|113533198|dbj|BAF05581.1| Os01g0636700 [Oryza sativa Japonica Group]
Length = 469
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPH---GQHAVI---LA 315
Y+ KYGK++ + ++ +AG S A S ++I H G+H V+ L
Sbjct: 34 YFIKYGKIVDL--IIIRAKGTAQAGDSAKITYADAAISDKIIKCRHIIKGKHVVVDRTLM 91
Query: 316 EDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ 375
ED +Y + + R R P T + DD+ ++F+ YG V D +I +
Sbjct: 92 EDTIQYKDKKTNR----------RITLDGLPW--TVSNDDIVHFFSPYGTVVDHQITQKD 139
Query: 376 KRMF----GFVTFASADTVKMILAKGNPHFVCGARV 407
+ GFV F+S V IL+ GN + G +V
Sbjct: 140 ENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKV 175
>gi|167518996|ref|XP_001743838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777800|gb|EDQ91416.1| predicted protein [Monosiga brevicollis MX1]
Length = 159
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVC 403
E+ +++YF YG V D + Q+ R FGFVTFA +V +L+ G PH VC
Sbjct: 13 EESLTDYFQRYGTVIDAVVMRDSVTQRSRGFGFVTFADPKSVTDVLSSG-PHVVC 66
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+++YG V+ A + +S G+ A K+ ++ G H V E PK
Sbjct: 19 YFQRYGTVIDAV-VMRDSVTQRSRGFGFVTF-ADPKSVTDVL--SSGPHVVCDREIDPK- 73
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----- 376
RS P T ++++L A S+ ED + NYF +G ++D CQ+
Sbjct: 74 --RAIPRSSSDPASTTIKKLFLGGLA-SSMNEDSIKNYFVQFGEIEDA--LCQRDRDTGR 128
Query: 377 -RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
R FGF+TF + + + +L + H + G RV
Sbjct: 129 PRGFGFITFKTEEAAESVL-RQQYHTIDGNRV 159
>gi|428181280|gb|EKX50144.1| hypothetical protein GUITHDRAFT_67277, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 43.1 bits (100), Expect = 0.36, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 307 HGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPA--ESTFTEDDVSNYFNTYG 364
HG +L D + R+E PG S Q F ST T D+ YF YG
Sbjct: 60 HGGLTDVLVAD--NVVRGRHEIRGPGISADDSLQTSKVFVGGIASTVTTQDLYEYFGKYG 117
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
V+DV++ + R F FVTF A+TV+ ++
Sbjct: 118 EVEDVQVMVDPQTHRSRGFAFVTFKHAETVQDVM 151
>gi|217074298|gb|ACJ85509.1| unknown [Medicago truncatula]
gi|388503058|gb|AFK39595.1| unknown [Medicago truncatula]
Length = 397
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 22/94 (23%)
Query: 331 PGPIVTG-------SRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM---- 378
PGPI S++I++ P E+ +D+ YF +G ++DV IP KR
Sbjct: 210 PGPIYGRGEPRRRISKKIFVGRLPPEAN--SEDLRQYFGRFGRIEDVCIPRDPKRTGHRG 267
Query: 379 FGFVTFAS---ADTVKMILAKGNPHFVCGARVLV 409
FGFVTFA AD V + PH +CG V +
Sbjct: 268 FGFVTFADEGVADRVSL-----RPHEICGHEVAI 296
>gi|225461983|ref|XP_002271592.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C [Vitis
vinifera]
gi|147768836|emb|CAN78130.1| hypothetical protein VITISV_036088 [Vitis vinifera]
Length = 348
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ N+F+ YG V + +I + R FGF+ F S + V +++KGN + G
Sbjct: 116 STVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAG 175
Query: 405 ARVLVK 410
+V +K
Sbjct: 176 TQVEIK 181
>gi|148224084|ref|NP_001080489.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus laevis]
gi|27694771|gb|AAH43814.1| Hnrpab-prov protein [Xenopus laevis]
Length = 324
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 315 AEDAPKYLENRNERSDPGPIVTGSRQIYLTF-PAESTFT--------EDDVSNYFNTYGP 365
AE K LE++ R D G ++ + + + P + F ED + YF T+G
Sbjct: 115 AESVDKVLEHKEHRLD-GRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGE 173
Query: 366 VDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
++ + +P ++R F F+TF D VK IL K H V G++ +K
Sbjct: 174 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK-KFHNVSGSKCEIK 221
>gi|302121706|gb|ADK92872.1| hnRNP [Hypericum perforatum]
Length = 477
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T R+I++ A ST TE D NYF+ +G + D + Q+ R FGF+T+ S
Sbjct: 101 PGPDHT--RKIFVGGLA-STVTESDFKNYFDQFGIIIDAVVMYDHNTQRPRGFGFITYDS 157
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V +L K H + G V VK
Sbjct: 158 DEAVDKVLTK-TFHELNGKMVEVK 180
>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
Length = 997
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPH---GQHAVI---LA 315
Y+ KYGK++ + ++ +AG S A S ++I H G+H V+ L
Sbjct: 34 YFIKYGKIVDL--IIIRAKGTAQAGDSAKITYADAAISDKIIKCRHIIKGKHVVVDRTLM 91
Query: 316 EDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ 375
ED +Y + + R R P T + DD+ ++F+ YG V D +I +
Sbjct: 92 EDTIQYKDKKTNR----------RITLDGLPW--TVSNDDIVHFFSPYGTVVDHQITQKD 139
Query: 376 KRMF----GFVTFASADTVKMILAKGNPHFVCGARV 407
+ GFV F+S V IL+ GN + G +V
Sbjct: 140 ENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKV 175
>gi|327306541|ref|XP_003237962.1| pre-mRNA splicing factor [Trichophyton rubrum CBS 118892]
gi|326460960|gb|EGD86413.1| pre-mRNA splicing factor [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 339 RQIYL-TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMIL 394
R+IY+ P ++T E D+ F YG V+ VRIP + R FGFVTFA+ D L
Sbjct: 985 REIYVCNIPYKTT--EGDLVELFTAYGDVESVRIPTKVNGDTRGFGFVTFATKDQSTAAL 1042
Query: 395 AKGNPHF 401
A F
Sbjct: 1043 AMNEKTF 1049
>gi|413954078|gb|AFW86727.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 278
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TED + +F++YG V + +I + R FGFVTF S D V+ ++++G H + G
Sbjct: 191 SLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGK 250
Query: 406 RV 407
+V
Sbjct: 251 QV 252
>gi|47226027|emb|CAG04401.1| unnamed protein product [Tetraodon nigroviridis]
Length = 475
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
++ D+++YF +GPV DV I + K ++ V F D+++ L+ G H + G ++ VK
Sbjct: 39 ISQADITDYFQQFGPVSDV-IMDKDKGVYAIVLFGETDSIQAALSCGE-HRLKGLKLRVK 96
Query: 411 PYREKS-KLVDRK 422
P +K KL+ +K
Sbjct: 97 PREKKEFKLIPKK 109
>gi|222618922|gb|EEE55054.1| hypothetical protein OsJ_02753 [Oryza sativa Japonica Group]
Length = 755
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPH---GQHAVI---LA 315
Y+ KYGK++ + ++ +AG S A S ++I H G+H V+ L
Sbjct: 34 YFIKYGKIVDL--IIIRAKGTAQAGDSAKITYADAAISDKIIKCRHIIKGKHVVVDRTLM 91
Query: 316 EDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ 375
ED +Y + + R R P T + DD+ ++F+ YG V D +I +
Sbjct: 92 EDTIQYKDKKTNR----------RITLDGLPW--TVSNDDIVHFFSPYGTVVDHQITQKD 139
Query: 376 KRMF----GFVTFASADTVKMILAKGNPHFVCGARV 407
+ GFV F+S V IL+ GN + G +V
Sbjct: 140 ENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKV 175
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404
TEDDV N F++ G + VR+P + + FG+VTF S D K + N HF+ G
Sbjct: 322 TEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSIDAAKQCVEM-NGHFIAG 377
>gi|428671713|gb|EKX72628.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 399
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ-----KRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
TEDD+ YF+ +G V D P QQ + FGF++F + + ++ + + PH + G
Sbjct: 134 TEDDLEEYFSKFGTVHDAYCPRQQNNSNLNKGFGFISFDNEEAIQKVF-ETVPHIIMGRE 192
Query: 407 VLV 409
V+V
Sbjct: 193 VIV 195
>gi|222622445|gb|EEE56577.1| hypothetical protein OsJ_05928 [Oryza sativa Japonica Group]
Length = 510
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TED++ +F+ YG + + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 277 SSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 336
Query: 405 ARVLVK 410
+V +K
Sbjct: 337 KQVEIK 342
>gi|297796435|ref|XP_002866102.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
gi|297311937|gb|EFH42361.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
Length = 449
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE++ NYF+ +G + DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 120 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNG 178
Query: 405 ARVLVK 410
V VK
Sbjct: 179 KLVEVK 184
>gi|148227778|ref|NP_001080390.1| heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Xenopus
laevis]
gi|28302301|gb|AAH46692.1| Hnrpa2b1 protein [Xenopus laevis]
Length = 346
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++G + + + + G+ + + RPH ++ PK
Sbjct: 28 YYEQWGTLTDCVVMRDPASKRSR-GFGFVTFSCMNEVDAAMATRPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E + PG VT +++++ E T E + YF YG +D + I +KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIDSIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
F FVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFAFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
>gi|403333244|gb|EJY65703.1| hypothetical protein OXYTRI_14141 [Oxytricha trifallax]
Length = 665
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 177 LNAELPVKTCHYFNKGFCKHGSNCRYYH 204
LN + KTC +F KG CK+G+NCRY H
Sbjct: 471 LNNQDKFKTCEFFKKGNCKYGANCRYQH 498
>gi|380014686|ref|XP_003691353.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Apis
florea]
Length = 410
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
Q+ I+A +P + N DPG + G + T P + + YF YG + +
Sbjct: 4 QNQEIVASGSPAEVPN-----DPGKMFIGGLS-WQTSP-------ESLREYFTKYGDITE 50
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK---PYREKSKLVDR 421
V + ++ R FGF+TFA +V +LA+GN H + G ++ K P R K+V R
Sbjct: 51 VMVMKDPTTRRSRGFGFITFADPASVDKVLAQGN-HELDGKKIDPKVAFPRRTHPKMVTR 109
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV NYF +GP++D + + R FGFVTF S D
Sbjct: 106 MVTRTKKIFVGGLSAPT-TLEDVKNYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 164
Query: 390 VKMI 393
V +
Sbjct: 165 VDKV 168
>gi|296089958|emb|CBI39777.3| unnamed protein product [Vitis vinifera]
Length = 293
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED+ N+F+ YG V + +I + R FGF+ F S + V +++KGN + G
Sbjct: 116 STVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAG 175
Query: 405 ARVLVK 410
+V +K
Sbjct: 176 TQVEIK 181
>gi|449468578|ref|XP_004151998.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
gi|449509419|ref|XP_004163583.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
Length = 436
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S TED YF +YG V DV I Q+ R FGF+TF + D V +L K + H + G
Sbjct: 119 SALTEDGFRQYFESYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLYK-SFHELNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|403222919|dbj|BAM41050.1| DAZ-associated protein 1 [Theileria orientalis strain Shintoku]
Length = 395
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ-----KRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
T+DD+ YF +G V D P Q + FGF++F S +T++ + + +PH + G
Sbjct: 126 TKDDLEEYFKKFGTVYDAYCPKQSNYSTLNKGFGFISFDSEETIQKVF-ETSPHVIMGRE 184
Query: 407 VLV 409
V+V
Sbjct: 185 VIV 187
>gi|326527725|dbj|BAK08137.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528387|dbj|BAJ93382.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 453
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ T+++ YF T+G V DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 127 SSLTDEEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHK-TFHDLGG 185
Query: 405 ARVLVK 410
V VK
Sbjct: 186 KMVEVK 191
>gi|47086935|ref|NP_998467.1| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|44890703|gb|AAH66681.1| Zgc:77052 [Danio rerio]
Length = 309
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF ++G ++ + +P ++R F F+TF VK IL K H VCG++
Sbjct: 141 TEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK-KYHNVCGSKC 199
Query: 408 LVK 410
+K
Sbjct: 200 EIK 202
>gi|357603649|gb|EHJ63861.1| hypothetical protein KGM_07603 [Danaus plexippus]
Length = 411
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+EK+G+VL A + +R K G S R + + R Q +I ++
Sbjct: 124 YFEKFGEVLMA-----QLKRDPKTGMSKGFAFIRFSSYTSQM-RVLAQRHMIDG----RW 173
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGF 381
+ R S G + + ++++ E T +D+ YF+ +G V DV IP + R F F
Sbjct: 174 CDVRIPNSKEGSVTSMPCKVFVGRCTED-LTANDLREYFSQFGEVTDVFIP-KPFRAFSF 231
Query: 382 VTFASADTVKMILAKGNPHFVCGARVLV---KPYREKS-----KLVDRKYQE 425
+TF + + + G H + G V V P + KS L R Y+E
Sbjct: 232 ITFLDPEVAQSLC--GQDHIIKGVSVNVSNASPKQNKSGSNQRNLPSRNYEE 281
>gi|1710623|sp|P51989.1|RO21_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A2 homolog 1;
AltName: Full=hnRNP A2(A)
gi|214741|gb|AAA49948.1| ribonucleoprotein [Xenopus laevis]
Length = 346
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++G + + + + G+ + + RPH ++ PK
Sbjct: 28 YYEQWGTLTDCVVMRDPASKRSR-GFGFVTFSCMNEVDAAMATRPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E + PG VT +++++ E T E + YF YG +D + I +KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIDSIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
F FVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFAFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
>gi|403283529|ref|XP_003933171.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Saimiri boliviensis boliviensis]
Length = 254
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH H ++ PK +R + PG +T ++I+L E T E + +YF YG
Sbjct: 30 RPHKVHGRVVE---PKRAVSREDSQRPGAHLT-VKKIFLGGIKEDT-EEHHLRDYFEQYG 84
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ + I +KR F FV F D+V MI+ + H V G V+ K ++
Sbjct: 85 KIEVIEIITDRGSGKKRGFAFVAFDDHDSVDMIVIQ-KYHTVNGHNCEVRKALSKQEMA 142
>gi|326525423|dbj|BAJ88758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLIDR--PHGQHAVI 313
Y+ ++G+V +A + + G+A G+ + R+ +ID + AV
Sbjct: 25 YFGRFGEVTEA--VIMRDRNTGRARGFGFIVFAEAGVAERVTMDKHMIDGRMVEAKKAVP 82
Query: 314 LAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
+ + N + PGP+ T R+I++ A S TE + YF +G + DV +
Sbjct: 83 RDDQSIASKNNGSSIGSPGPVRT--RKIFVGGLA-SNVTEVEFRRYFEQFGMITDVVVMY 139
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 179
>gi|46806499|dbj|BAD17623.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806518|dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
Length = 374
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TED++ +F+ YG + + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 164 SSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 223
Query: 405 ARVLVK 410
+V +K
Sbjct: 224 KQVEIK 229
>gi|384493669|gb|EIE84160.1| hypothetical protein RO3G_08870 [Rhizopus delemar RA 99-880]
Length = 176
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 174 YQSLNAELPVKTCHYFNKGFCKHGSNCRYYH--GLVSESFTQMFGQTSPDGFNDDHLFSP 231
Y ++ E K C ++ +GFCKHG NCR H LV +++ F PDG N P
Sbjct: 21 YLHIDPESKQKECPWYARGFCKHGPNCRNKHVRKLVCQNYVTGF---CPDGLN-----CP 72
Query: 232 GSLEKLELEIIELL 245
K EL ++ L
Sbjct: 73 NGHPKYELPVMYTL 86
>gi|156381166|ref|XP_001632137.1| predicted protein [Nematostella vectensis]
gi|156219188|gb|EDO40074.1| predicted protein [Nematostella vectensis]
Length = 173
Score = 42.7 bits (99), Expect = 0.51, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRR--YQSLNAELPVKTCHYFNKGFCKHG 197
DQ E ++ + +CY+ S G + ++ Y ++ + +K C ++++GFCKHG
Sbjct: 80 DQCEFLHQYDMTKMPECYF----YSKFGECSNKKCQYLHIDPQSKIKDCPWYDRGFCKHG 135
Query: 198 SNCRYYHGLVSESFTQMFGQTSPDGFNDDH 227
+CR+ H + G PDG N H
Sbjct: 136 PHCRHRHVRRVLCINYLCG-FCPDGPNCKH 164
>gi|326494758|dbj|BAJ94498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 494
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLIDR--PHGQHAVI 313
Y+ ++G+V +A + + G+A G+ + R+ +ID + AV
Sbjct: 48 YFGRFGEVTEA--VIMRDRNTGRARGFGFIVFAEAGVAERVTMDKHMIDGRMVEAKKAVP 105
Query: 314 LAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
+ + N + PGP+ T R+I++ A S TE + YF +G + DV +
Sbjct: 106 RDDQSIASKNNGSSIGSPGPVRT--RKIFVGGLA-SNVTEVEFRRYFEQFGMITDVVVMY 162
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 163 DHNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 202
>gi|350398654|ref|XP_003485263.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Bombus
impatiens]
Length = 410
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
Q+ I+A +P + N DPG + G + T P + + YF YG + +
Sbjct: 4 QNQEIVASGSPAEVPN-----DPGKMFIGGLS-WQTSP-------ESLREYFTKYGDITE 50
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK---PYREKSKLVDR 421
V + ++ R FGF+TFA +V +LA+GN H + G ++ K P R K+V R
Sbjct: 51 VMVMKDPTTRRSRGFGFITFADPASVDKVLAQGN-HELDGKKIDPKVAFPRRTHPKMVTR 109
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV NYF +GP++D + + R FGFVTF S D
Sbjct: 106 MVTRTKKIFVGGLSAPT-TLEDVKNYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 164
Query: 390 VKMI 393
V +
Sbjct: 165 VDKV 168
>gi|350580575|ref|XP_003480852.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 349
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YY+++GK+ S + + G+ + + + RPH ++ PK
Sbjct: 40 YYQQWGKLTDCVVLRDPSNKRSR-GFGFVTFSSVAEVDAAMAARPHSVDGKVVD---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG + +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESEKPGAHLA-VKKLFVGGIKEDT-EEHHLRDYFEKYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>gi|330842446|ref|XP_003293189.1| hypothetical protein DICPUDRAFT_41662 [Dictyostelium purpureum]
gi|325076506|gb|EGC30286.1| hypothetical protein DICPUDRAFT_41662 [Dictyostelium purpureum]
Length = 880
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 325 RNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK---RMFGF 381
+N +S P S+ I P EST E + F YG + VRIP + R FGF
Sbjct: 772 QNAKSKPS-----SKIIIKNLPFESTTKE--IRKLFAAYGEIQSVRIPKKPNGGHRGFGF 824
Query: 382 VTFASADTVKMIL-AKGNPHFVCGARVLVKPYREKSKLVD 420
V F + + K + A G+ HF R LV Y E+ K VD
Sbjct: 825 VEFLTEEEAKNAMEALGSSHFY--GRHLVLQYAEQDKNVD 862
>gi|30696616|ref|NP_851195.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334188426|ref|NP_001190546.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009262|gb|AED96645.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009265|gb|AED96648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 448
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE++ NYF+ +G + DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|146197870|dbj|BAF57645.1| hnRNP A2/B1 protein [Dugesia japonica]
Length = 386
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTV-KMILAKGNPHFVCGA 405
FTEDD+ +YF+T+G + D I R F F+TF D V K+IL+K PH +
Sbjct: 120 FTEDDLKDYFSTFGEIVDCTIKRDNVSGLSRGFAFITFTDRDIVDKVILSK--PHAIRHC 177
Query: 406 RVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSRGCETSRFIRKQLLEEQ 465
V VK +L R+ E + + + SE + R ++ +++
Sbjct: 178 IVDVKKALSPEEL--RQLDENHSTTNNNNNNNNNNISEFD------DCQRIYKQNQEQDE 229
Query: 466 EQAFELERRRLAELQLVRKPMPNPPYFGGYM 496
E + + +++ + P P Y G YM
Sbjct: 230 ETKLKEKNKKVTKRSQSYPPTEFPNYMGYYM 260
>gi|22531168|gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 448
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE++ NYF+ +G + DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|195999310|ref|XP_002109523.1| hypothetical protein TRIADDRAFT_53642 [Trichoplax adhaerens]
gi|190587647|gb|EDV27689.1| hypothetical protein TRIADDRAFT_53642 [Trichoplax adhaerens]
Length = 257
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGR--RYQSLNAELPVKTCHYFNKGFCKHG 197
DQ E ++ + +CY+ S G + + +Y +N E +K C ++++GFCKHG
Sbjct: 80 DQCEFLHEYDMTKMPECYF----YSKFGECSNKECQYLHINPESKIKDCPWYDRGFCKHG 135
Query: 198 SNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEI 241
CR+ H + G P+G N H+ L E++I
Sbjct: 136 PACRHRHVRRVACLNYLNG-FCPEGSNCKHVHLRFELPTREIDI 178
>gi|389610037|dbj|BAM18630.1| heterogeneous nuclear ribonucleoprotein 27c [Papilio xuthus]
Length = 318
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+E++G+V+ L + + G+ + A + +R + + H ++
Sbjct: 139 YFEQFGEVVMV--QLKKDKNGSFKGFGFIRF-ATYASQMRALAQRHNIDG--------RW 187
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGF 381
++ R S G + ++++ E T DD+ YF+++G V DV +P + R FGF
Sbjct: 188 VDVRIPNSKEGVVPQMPCKVFVGRCTED-MTADDLREYFSSFGEVTDVFVP-RPFRAFGF 245
Query: 382 VTFASADTVKMILAKGNPHFVCGARVLV 409
VTF + + + G H + GA V V
Sbjct: 246 VTFLDPEVAQSLC--GEDHVIKGASVSV 271
>gi|18423760|ref|NP_568826.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|42573682|ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15292725|gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20465895|gb|AAM20100.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332009263|gb|AED96646.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009264|gb|AED96647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 460
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE++ NYF+ +G + DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|399218473|emb|CCF75360.1| unnamed protein product [Babesia microti strain RI]
Length = 518
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 330 DPGPIVTGSR-QIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM-----FGFV 382
D G V R +I++T P E+T DD+ NYF +G V+D P Q + FGF+
Sbjct: 112 DSGDRVNRDRYRIFVTRIPFEAT--SDDIENYFKQFGEVEDAYCPKQPGKAHLNKGFGFI 169
Query: 383 TFASADTVKMILAKGNPHFVCGARVLV 409
+F + + ++ + PH + G ++V
Sbjct: 170 SFKNDEVLQAVF-NARPHTILGREIVV 195
>gi|326501296|dbj|BAJ98879.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 354
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 351 FTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
TEDD ++F YG V + +I ++ R FGFV F S + V +LA GN + G++
Sbjct: 124 LTEDDFKDFFEKYGAVVEHQIMRDHQTRRSRGFGFVVFESEEVVDDLLANGNMIDLAGSK 183
Query: 407 VLVK 410
V +K
Sbjct: 184 VEIK 187
>gi|148907387|gb|ABR16827.1| unknown [Picea sitchensis]
Length = 432
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA------GYSLTKLLARLKNSVRLIDRPHGQHAVILA 315
Y++ YG V++ + + G+A G+S + R+ ID V L
Sbjct: 25 YFKVYGDVVET--VIMRDKMTGRARGFGFIGFSEPTAVDRVLQDKHTID----GRQVELK 78
Query: 316 EDAPKYLENRNERSDPGPIVTGSR--QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP- 372
P+ RN + + G R +I++ A T TEDD YF +G + DV +
Sbjct: 79 RAVPREEHQRNAQKSGSNVGAGPRTKKIFVGGLAP-TVTEDDFKGYFEQFGTITDVVVMY 137
Query: 373 ---CQQKRMFGFVTFASADTVKMILAK 396
Q+ R FGF+TF S + V ++ K
Sbjct: 138 DHISQRPRGFGFITFDSEEAVDKVVMK 164
>gi|356513961|ref|XP_003525676.1| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]
Length = 2304
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S TED+ ++F YG V D +I + R FGF+TF S + V +L+ GN G
Sbjct: 2073 SNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAG 2132
Query: 405 ARVLVKPYREK 415
++V +K K
Sbjct: 2133 SQVEIKKAEPK 2143
>gi|357122209|ref|XP_003562808.1| PREDICTED: uncharacterized protein LOC100836006 [Brachypodium
distachyon]
Length = 472
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDR--PHGQHAVI 313
Y+ ++G+V +A + + G+A G+ + R+ +ID + AV
Sbjct: 25 YFGRFGEVTEA--VIMRDRNTGRARGFGFIVFAEPGVAERVTMDKHMIDGRMVEAKKAVP 82
Query: 314 LAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
+ + N + PGP+ T R+I++ A S TE + YF +G + DV +
Sbjct: 83 RDDQSIASKNNGSSIGSPGPVRT--RKIFVGGLA-SNVTEVEFRRYFEQFGMITDVVVMY 139
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 179
>gi|149691104|ref|XP_001493051.1| PREDICTED: probable E3 ubiquitin-protein ligase makorin-3-like
[Equus caballus]
Length = 496
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
TC Y+ G CK G NCRY H L + +SP D + +E L E+ E
Sbjct: 82 TCRYYLHGMCKEGENCRYSHDLSGRQMARESRSSSPQASTDRGASTAAHVETLPQEVAE 140
>gi|444515638|gb|ELV10942.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Tupaia chinensis]
Length = 244
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK R E PG VT +++++ E T E + +YF YG
Sbjct: 11 RPHSIDGTVVE---PKRAMAREESGKPGAHVT-VKKLFVGGIKEDT-GEHHLRDYFEGYG 65
Query: 365 PVDDVRIPCQ----QKRMFGFVTFASADTV-KMILAK 396
D + I +KR FGFVTF D V K++L K
Sbjct: 66 KTDTIEIITDWRSGKKRGFGFVTFDDHDPVEKIVLQK 102
>gi|334310867|ref|XP_001381121.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Monodelphis domestica]
Length = 376
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + YF +G ++ + +P ++R F F+TF D VK IL K H V G++
Sbjct: 193 TEDKIREYFGDFGEIESIELPMDPKTNKRRGFVFITFKEEDPVKKILEK-KFHNVGGSKC 251
Query: 408 LVK 410
+K
Sbjct: 252 EIK 254
>gi|300176462|emb|CBK23773.2| unnamed protein product [Blastocystis hominis]
Length = 178
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMI 393
TE+DV F+ YG V VRI Q R +GFV F S DT + +
Sbjct: 103 LTEEDVRREFSAYGDVKGVRIVTQGDRHYGFVYFNSVDTAEKV 145
>gi|125538654|gb|EAY85049.1| hypothetical protein OsI_06408 [Oryza sativa Indica Group]
Length = 504
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TED++ +F+ YG + + +I + R FGFVTF S D+V+ ++++G + G
Sbjct: 270 SSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 329
Query: 405 ARVLVK 410
+V +K
Sbjct: 330 KQVEIK 335
>gi|391331401|ref|XP_003740135.1| PREDICTED: TAR DNA-binding protein 43-like [Metaseiulus
occidentalis]
Length = 479
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+E +G+VL A + K G+ + + ++ +R++ + H +I ++
Sbjct: 131 YFEAFGEVLMAQVKKDPKTQQSK-GFGFIRF-SSYESQIRVLSKRH----MIDG----RW 180
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGF 381
+ + S G SR++++ E T DD+ +YF+ +G V DV IP + R F F
Sbjct: 181 CDVKIPNSRDGQASELSRKVFVGRCTED-LTADDLRDYFSKFGEVTDVFIP-KPFRAFAF 238
Query: 382 VTFASADTVKMILAKGNPHFVCGARVLV 409
VTF A+ + + G H + G + V
Sbjct: 239 VTFVDAEVAQSLC--GEDHIIKGTSIHV 264
>gi|323452376|gb|EGB08250.1| hypothetical protein AURANDRAFT_4745, partial [Aureococcus
anophagefferens]
Length = 216
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 186 CHYFNKGFCKHGSNCRYYHGL---------VSESFTQMFGQTSPDGFNDDHLFSPGSLEK 236
C +F +G C +G +CR++H + S+ +FG+ F DD + G+L K
Sbjct: 72 CLFFARGCCANGGDCRFFHRIPVKADLERFASDEMRDVFGRERHKDFRDD-MTGVGALMK 130
Query: 237 --LELEIIELLKARRGNPISIASLPMLYYEKYGKV 269
L + LLKA +P+++ + ++G+V
Sbjct: 131 PCRTLYVGSLLKAEYADPLALEEALWRNFGEWGEV 165
>gi|196001955|ref|XP_002110845.1| hypothetical protein TRIADDRAFT_54175 [Trichoplax adhaerens]
gi|190586796|gb|EDV26849.1| hypothetical protein TRIADDRAFT_54175 [Trichoplax adhaerens]
Length = 310
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 354 DDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
D + +FN YG V D I Q+ R FGFVTF V +L G PH + G ++
Sbjct: 22 DSMKKFFNKYGNVSDCVIKKDPVTQRSRGFGFVTFEDPGCVNSVLNAG-PHLLDGKQIDP 80
Query: 410 KPYREKSK 417
KP +K +
Sbjct: 81 KPAVQKGQ 88
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASAD 388
P + ++++ A++T +ED++ YF+++G V +V++ ++ R FGFVTF + +
Sbjct: 95 PSNVNTNKVFIGGVAQNT-SEDEIKKYFSSFGQVKNVQLMYDKTTKRMRGFGFVTFENDE 153
Query: 389 TVKMILAKGNPHFVCGARVLVKPYREKS 416
TVK + H + G V VK ++S
Sbjct: 154 TVKKTCGV-HFHNINGKSVEVKLAEDRS 180
>gi|195999482|ref|XP_002109609.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
gi|190587733|gb|EDV27775.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
Length = 154
Score = 42.4 bits (98), Expect = 0.71, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF YG + D + C+ + R FGFVT+ +VK LA G PH + G V
Sbjct: 13 TDETLRNYFAKYGDIADSVVICESGSRKPRGFGFVTYKDVTSVKNCLA-GIPHQIDGKTV 71
Query: 408 LVK 410
VK
Sbjct: 72 EVK 74
>gi|9758187|dbj|BAB08572.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 473
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE++ NYF+ +G + DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|115486383|ref|NP_001068335.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|108864610|gb|ABA94921.2| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645557|dbj|BAF28698.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|215697828|dbj|BAG92021.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740693|dbj|BAG97349.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 467
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--------GQHAV 312
Y++KYG+V++A + + G+A G+ + A + R+I H + AV
Sbjct: 25 YFDKYGEVVEA--VIMRDRATGRARGFGFI-VFADPAVAERVIMEKHMIDGRMVEAKKAV 81
Query: 313 ILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
+ + PGP T ++I++ A ST TE D YF +G + DV +
Sbjct: 82 PRDDQHALSKSGGSAHGSPGPSRT--KKIFVGGLA-STVTEADFRKYFEQFGTITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYDSEDAVDKALFK-TFHELNGKMVEVK 179
>gi|307105138|gb|EFN53389.1| hypothetical protein CHLNCDRAFT_36600 [Chlorella variabilis]
Length = 321
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED YF+ +G V + +I + R FGFVTFA + + + A G H + G +V
Sbjct: 105 TEDQFREYFSQFGEVVEAQIMQDHMSGRSRGFGFVTFAEDASAESVFAAGTMHDLGGKKV 164
Query: 408 LVKPYREK 415
VKP K
Sbjct: 165 EVKPATPK 172
>gi|297744195|emb|CBI37165.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TE+ YF TYG V DV + Q+ R FGF++F + D V +L K H + G
Sbjct: 119 STLTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGFGFISFDTEDAVDRVLHK-TFHDLNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|431909006|gb|ELK12597.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Pteropus alecto]
Length = 220
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK R E PG VT +++++ E T E +YF YG
Sbjct: 11 RPHSIDGRVVE---PKRAVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHFKDYFEEYG 65
Query: 365 PVDDVRIPCQ----QKRMFGFVTFASADTV-KMILAK 396
+D + I +KR FGFVTF D V K++L K
Sbjct: 66 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 102
>gi|50288923|ref|XP_446891.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526200|emb|CAG59824.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 323 ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMF--- 379
ENR++RSD P++ R+I + ++ +D + + F YG +DD+RIP +Q M
Sbjct: 179 ENRDKRSD-APVLE-RREIIIRNLPKTMLVKDTLLDIFKKYGAIDDLRIPKKQLEMLSDL 236
Query: 380 ----GFVTFASADTVKMILAKGNPHFVCGARVLVK--------PYREKSKLVDRKYQER 426
FV + + + K L N H + ++ V +E +++++ K+ E+
Sbjct: 237 NHGCAFVVYTNPEDAKSALEMNN-HVIDDIKISVNLSDSHAYLERKEVNRIINSKHTEK 294
>gi|148233568|ref|NP_001079471.1| heterogeneous nuclear ribonucleoprotein A2 homolog 2 [Xenopus
laevis]
gi|1710624|sp|P51990.1|RO22_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A2 homolog 2;
AltName: Full=hnRNP A2(B)
gi|214743|gb|AAB59951.1| ribonucleoprotein [Xenopus laevis]
gi|27694622|gb|AAH43750.1| MGC52881 protein [Xenopus laevis]
Length = 358
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK R E + PG VT +++++ E T E + YF YG
Sbjct: 70 RPHTIDGRVVE---PKRAVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYG 124
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ I +KR FGFVTF D V K++L K H + G V+ K ++
Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQ 182
Query: 420 D 420
D
Sbjct: 183 D 183
>gi|324514688|gb|ADY45952.1| Heterogeneous nuclear ribonucleoprotein A1 [Ascaris suum]
Length = 448
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG------------ 308
L+Y ++G V+ + + Q G+ + DRPH
Sbjct: 160 LFYSQWGNVVDCI-VIRDPQTKYSRGFGFVTFATMQMAEAAMADRPHTINNKVVDPKRAI 218
Query: 309 ---QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGP 365
Q + +L P +LE DPG ++ S I+ + T D + +YF+T+G
Sbjct: 219 PREQMSPMLPNHPPPFLEGE---PDPGCKLSLS-GIHWEY-----HTVDVLRHYFDTFGV 269
Query: 366 VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
V+ V I R FGFV F LA G H + G
Sbjct: 270 VEQVEI-LGNPRGFGFVVFEEKSAADRCLAHGKVHMING 307
>gi|148707568|gb|EDL39515.1| mCG1047313 [Mus musculus]
Length = 316
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++EK+G L + + Q G+ + + L RPH ++ PK
Sbjct: 32 HFEKWG-TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVAAALCARPHKVDGRVVE---PKR 87
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + PG +T ++I++ E T E ++ +YF YG ++ + + +KR
Sbjct: 88 AVSREDSVKPGAHLT-VKKIFVGGIKEDT-EEYNLRDYFEKYGKIETIEVMEDRQSGKKR 145
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 146 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 185
>gi|414590674|tpg|DAA41245.1| TPA: hypothetical protein ZEAMMB73_495774 [Zea mays]
Length = 470
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLID-RPHGQHAVIL 314
Y+ ++G V +A + + G+A G+ + + R+ +ID R +
Sbjct: 25 YFGRFGDVTEA--VIMRDRNTGRARGFGFVVFADSGIAERVTMEKHMIDGRMVEAKKAVP 82
Query: 315 AEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI--- 371
+D +N + PGP T R+I++ A S TE + YF +G + DV +
Sbjct: 83 RDDQSIASKNNSSIGSPGPGRT--RKIFVGGLA-SNVTEVEFRRYFEQFGVITDVVVMYD 139
Query: 372 -PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 140 HNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 178
>gi|326506828|dbj|BAJ91455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ T+++ YF T+G V DV + Q+ R FGF+TF S D V +L K H + G
Sbjct: 25 SSLTDEEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHK-TFHDLGG 83
Query: 405 ARVLVK 410
V VK
Sbjct: 84 KMVEVK 89
>gi|328724866|ref|XP_003248272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Acyrthosiphon pisum]
Length = 432
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFV------ 402
++ + YFN YG V D + + R FGFVTFA + V ++L G PH +
Sbjct: 26 QESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNVNVVLQNG-PHVLDGRTID 84
Query: 403 ---CGARVLVKPYREKS 416
C R L KP R S
Sbjct: 85 PKPCNPRTLQKPKRSSS 101
>gi|328724864|ref|XP_001951157.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Acyrthosiphon pisum]
Length = 442
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFV------ 402
++ + YFN YG V D + + R FGFVTFA + V ++L G PH +
Sbjct: 26 QESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNVNVVLQNG-PHVLDGRTID 84
Query: 403 ---CGARVLVKPYREKS 416
C R L KP R S
Sbjct: 85 PKPCNPRTLQKPKRSSS 101
>gi|296804902|ref|XP_002843299.1| U4/U6 snRNA-associated-splicing factor PRP24 [Arthroderma otae CBS
113480]
gi|238845901|gb|EEQ35563.1| U4/U6 snRNA-associated-splicing factor PRP24 [Arthroderma otae CBS
113480]
Length = 1278
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 339 RQIYL-TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMIL 394
R+IY+ P ++T E D+ F YG V+ VRIP + + R F FVTFA+ D L
Sbjct: 967 REIYVCNLPYKTT--EGDLVELFTAYGDVESVRIPTKVNGETRGFAFVTFATKDQSNAAL 1024
Query: 395 AKGNPHF 401
A F
Sbjct: 1025 AMNEKTF 1031
>gi|318086976|gb|ADV40080.1| putative RNA-binding protein musashi [Latrodectus hesperus]
Length = 298
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+ K+G+V + T+ G++ +R L + PH K
Sbjct: 73 YFSKFGEVTEVN-IKTDPTSGRSRGFAFVAFASRDSVDSVLHNGPHNIKG--------KQ 123
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKR 377
+E + + PG ++I++ ES TE D+ NYF YG V+ V +P Q+R
Sbjct: 124 IEAKRAKVRPGI-----KKIFVG-GIESDMTEADIRNYFEHYGKVEAVELPFDKVKNQRR 177
Query: 378 MFGFVTFASADTVKMILAK 396
F FVTF TV + +
Sbjct: 178 QFCFVTFEDEMTVDQVCKQ 196
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 355 DVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
D+ YF+ +G V +V I + R F FV FAS D+V +L G PH + G ++ K
Sbjct: 69 DLKEYFSKFGEVTEVNIKTDPTSGRSRGFAFVAFASRDSVDSVLHNG-PHNIKGKQIEAK 127
>gi|224064856|ref|XP_002301585.1| predicted protein [Populus trichocarpa]
gi|222843311|gb|EEE80858.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T ++I++ A ST TE D YF+ +G + DV + Q+ R FGF+T+ S
Sbjct: 101 PGPGRT--KKIFVGGLA-STVTESDFRKYFDQFGLITDVVVMYDHNTQRPRGFGFITYDS 157
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V +L K H + G V VK
Sbjct: 158 EEAVDKVLMK-TFHELNGKMVEVK 180
>gi|307940740|gb|ADN95984.1| G-strand specific single-stranded telomere-binding protein 2
[Nicotiana tabacum]
Length = 337
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T TED+ N+F+ +G V + I ++ R FGF+ F + V +LA+GN + G
Sbjct: 112 TTMTEDEFKNFFSKFGKVTEYEIIRDHVSKRSRGFGFIVFDNEQVVDNLLAEGNRTDMMG 171
Query: 405 ARVLVK 410
+V +K
Sbjct: 172 TQVEIK 177
>gi|84998348|ref|XP_953895.1| RNA-binding (SR) protein [Theileria annulata]
gi|65304893|emb|CAI73218.1| RNA-binding (SR) protein, putative [Theileria annulata]
Length = 303
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T +D+ YF+ YG V I + R FGFVTFA D+V +L K + A V
Sbjct: 40 TPEDLKEYFSKYGEVTHTEIVRDKNTGRSRGFGFVTFADRDSVNTVLRKVHKIDGVEADV 99
Query: 408 LVKPYREKSKLVDRKYQE 425
+ +EKSK++ +Y +
Sbjct: 100 KLAVRKEKSKILAPQYDQ 117
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMIL 394
R+I++ + T E+D++N+FN +G V V++ + R F FV FA+A+ K L
Sbjct: 58 RKIFVGGISWDT-NENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKAL 116
Query: 395 AKGNPHFVCGARVLVKPY--REKSKL 418
AK + + G + VKP RE KL
Sbjct: 117 AKKDAE-LKGKKCEVKPAKSRENKKL 141
>gi|170057997|ref|XP_001864728.1| TAR DNA-binding protein 43 [Culex quinquefasciatus]
gi|167877238|gb|EDS40621.1| TAR DNA-binding protein 43 [Culex quinquefasciatus]
Length = 540
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
T DD+ YF+ YG V DV IP + R F FVTF + + G H + GA V V
Sbjct: 220 MTADDIREYFSKYGEVTDVFIP-KPFRAFAFVTFIDPHVAQSLC--GEDHLIKGASVYV 275
>gi|76780030|gb|AAI06633.1| MGC52881 protein [Xenopus laevis]
Length = 346
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK R E + PG VT +++++ E T E + YF YG
Sbjct: 70 RPHTIDGRVVE---PKRAVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYG 124
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ I +KR FGFVTF D V K++L K H + G V+ K ++
Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQ 182
Query: 420 D 420
D
Sbjct: 183 D 183
>gi|414887334|tpg|DAA63348.1| TPA: hypothetical protein ZEAMMB73_769138, partial [Zea mays]
Length = 467
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLID-RPHGQHAVIL 314
Y+ ++G+V +A + + G+A G+ + + R+ +ID R +
Sbjct: 25 YFGRFGEVTEA--VIMRDRNTGRARGFGFVVFADSGIAERVTLDKHMIDGRMVEAKKAVP 82
Query: 315 AEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI--- 371
+D +N + PGP T R+I++ A S TE + YF +G + DV +
Sbjct: 83 RDDQSIASKNNSSIGSPGPGRT--RKIFVGGLA-SNVTEVEFRRYFEQFGVITDVVVMYD 139
Query: 372 -PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 140 HNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 178
>gi|193716167|ref|XP_001946745.1| PREDICTED: RNA-binding protein squid-like [Acyrthosiphon pisum]
Length = 290
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 324 NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMF 379
N N RS+ GP +++++ T +E ++ YF YG ++++ I Q R F
Sbjct: 6 NANGRSN-GPGRDDDKKLFVGGLGR-TISEKELREYFTQYGEIENINIKTDPFSGQSRGF 63
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARV 407
FV F +A TV +LA G+ HF+ +V
Sbjct: 64 AFVQFVNAKTVDDLLAAGD-HFIANKKV 90
>gi|328783731|ref|XP_623522.3| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like isoform 2
[Apis mellifera]
Length = 486
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV NYF +GP++D + + R FGFVTF S D
Sbjct: 182 MVTRTKKIFVGGLSAPT-TLEDVKNYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 240
Query: 390 VKMI 393
V +
Sbjct: 241 VDKV 244
>gi|226494259|ref|NP_001146396.1| uncharacterized protein LOC100279976 [Zea mays]
gi|219887017|gb|ACL53883.1| unknown [Zea mays]
gi|223975747|gb|ACN32061.1| unknown [Zea mays]
Length = 470
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLID-RPHGQHAVIL 314
Y+ ++G+V +A + + G+A G+ + + R+ +ID R +
Sbjct: 25 YFGRFGEVTEA--VIMRDRNTGRARGFGFVVFADSGIAERVTLDKHMIDGRMVEAKKAVP 82
Query: 315 AEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI--- 371
+D +N + PGP T R+I++ A S TE + YF +G + DV +
Sbjct: 83 RDDQSIASKNNSSIGSPGPGRT--RKIFVGGLA-SNVTEVEFRRYFEQFGVITDVVVMYD 139
Query: 372 -PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 140 HNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 178
>gi|449444504|ref|XP_004140014.1| PREDICTED: uncharacterized protein LOC101222391 [Cucumis sativus]
gi|449505107|ref|XP_004162378.1| PREDICTED: uncharacterized protein LOC101227668 [Cucumis sativus]
Length = 476
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFAS 386
PGP T R+I++ A ST TE + NYF+ +G + DV + R FGF+T+ S
Sbjct: 100 PGPGRT--RKIFVGGLA-STVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDS 156
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V+ +L K H + G V VK
Sbjct: 157 EEAVEKVLIK-TFHELNGKMVEVK 179
>gi|432899442|ref|XP_004076560.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Oryzias latipes]
Length = 328
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
+H+V++ PK R R+ P +VT +++I++ + +T ED V YF +G VDD
Sbjct: 83 KHSVLIKTIDPKVAFPR--RAQP-KMVTRTKKIFVGGLSANTVVED-VKQYFEQFGKVDD 138
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMI 393
+ + R FGF+TF S D V+ +
Sbjct: 139 AMLMFDKTTNRHRGFGFITFESEDIVEKV 167
>gi|345108301|emb|CBZ41969.1| deleted in azoospermia (Daz)-associated protein 1 [Botryllus
schlosseri]
Length = 333
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVK 391
T + +I++ A++ TE++V YF+ YG V +V ++ + FGFVTF S V
Sbjct: 100 TQTHKIFIGGLAQNA-TEEEVKAYFSQYGSVTEVVFVINKEENRHKGFGFVTFESESAVD 158
Query: 392 MILAKGNPHFVCGARVLVK 410
+ K + H +CG RV K
Sbjct: 159 QAVGK-HFHEICGKRVEAK 176
>gi|225438019|ref|XP_002274734.1| PREDICTED: uncharacterized protein LOC100263471 [Vitis vinifera]
Length = 441
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TE+ YF TYG V DV + Q+ R FGF++F + D V +L K H + G
Sbjct: 119 STLTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGFGFISFDTEDAVDRVLHK-TFHDLNG 177
Query: 405 ARVLVK 410
V VK
Sbjct: 178 KLVEVK 183
>gi|432899438|ref|XP_004076558.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Oryzias latipes]
Length = 328
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
+H+V++ PK R R+ P +VT +++I++ + +T ED V YF +G VDD
Sbjct: 83 KHSVLIKTIDPKVAFPR--RAQP-KMVTRTKKIFVGGLSANTVVED-VKQYFEQFGKVDD 138
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMI 393
+ + R FGF+TF S D V+ +
Sbjct: 139 AMLMFDKTTNRHRGFGFITFESEDIVEKV 167
>gi|158296255|ref|XP_001688946.1| AGAP006656-PA [Anopheles gambiae str. PEST]
gi|157016423|gb|EDO63952.1| AGAP006656-PA [Anopheles gambiae str. PEST]
Length = 237
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 307 HGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
HG H + + PK R R+ P +VT +++I++ + T T +DV +YF +GP+
Sbjct: 46 HGTHELDGKKIDPKVAFPR--RAHP-KMVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPI 101
Query: 367 DDVRI----PCQQKRMFGFVTFASADTVKMI 393
+D + + R FGFVTF S D V +
Sbjct: 102 EDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 132
>gi|168027702|ref|XP_001766368.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682277|gb|EDQ68696.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 104
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
ST TEDD YF +G + DV + Q+ R FGF+TF S D V+ ++
Sbjct: 9 STVTEDDFKKYFEQFGTITDVVVMYDHNTQRPRGFGFITFDSEDAVENVI 58
>gi|449463715|ref|XP_004149577.1| PREDICTED: uncharacterized protein LOC101220541 [Cucumis sativus]
gi|449517233|ref|XP_004165650.1| PREDICTED: uncharacterized protein LOC101224873 [Cucumis sativus]
Length = 480
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 24/195 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDA 318
Y+ YG+V++A + + G+A G+ + A + R+I H V +
Sbjct: 25 YFGHYGEVVEA--VIMRDRTTGRARGFGFV-VFADPGVAERVILDKHVIDGRTVEAKKAV 81
Query: 319 PK---YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI---- 371
PK + NR+ S G +G + ST TE D YF+ +G + DV +
Sbjct: 82 PKDDQNMLNRSSGSIHGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDH 141
Query: 372 PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK--------PYREKSKLVDRKY 423
Q+ R FGF+T+ S + V +L K H + G V VK P +S LV Y
Sbjct: 142 STQRPRGFGFITYDSEECVDRVLHK-TFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNY 200
Query: 424 QERMESPMYFSPQYV 438
M P F Y
Sbjct: 201 G--MSRPSGFLNSYT 213
>gi|395505200|ref|XP_003756932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Sarcophilus
harrisii]
Length = 278
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + YF +G ++ + +P ++R F F+TF D VK IL K H V G++
Sbjct: 95 TEDKIREYFGDFGEIESIELPMDPKTNKRRGFVFITFKEEDPVKKILEK-KFHNVGGSKC 153
Query: 408 LVK 410
+K
Sbjct: 154 EIK 156
>gi|356496896|ref|XP_003517301.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 362
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 331 PGPIVT-------GSRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM---- 378
PGPI S++I++ P E+T DD+ YF +G + DV +P KR
Sbjct: 214 PGPIYGRGDPSRRTSKKIFVGRLPPEAT--SDDLRQYFGRFGRILDVYVPRDPKRTGHRG 271
Query: 379 FGFVTFASADTVKMILAKGNPHFVCGARVLV 409
FGFVTFA + + H +CG +V +
Sbjct: 272 FGFVTFAEDGVADRVSRRS--HEICGHQVAI 300
>gi|193688245|ref|XP_001946219.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1, A2/B1
homolog [Acyrthosiphon pisum]
Length = 350
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 350 TFTEDDVSNYFNTYGPVDD----VRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TE+D+ YF+ YG V V +KR FGFV F D V I KG+ H + G
Sbjct: 109 SITEEDLKEYFSPYGNVTSAALVVHKETGKKRGFGFVEFDDYDPVDKICLKGS-HIIKGK 167
Query: 406 RVLVKPYREKSKLV 419
++ VK K ++
Sbjct: 168 KIDVKKALSKEEMA 181
>gi|196010301|ref|XP_002115015.1| hypothetical protein TRIADDRAFT_28865 [Trichoplax adhaerens]
gi|190582398|gb|EDV22471.1| hypothetical protein TRIADDRAFT_28865 [Trichoplax adhaerens]
Length = 210
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT ++++++ A +T TED ++ YF T+G ++D + Q+ R FGFV F S D+
Sbjct: 88 LVTRTKKVFVGGIATNTTTED-ITKYFETFGQIEDAMLMFDKSTQRHRGFGFVIFESEDS 146
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 359 YFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK---P 411
YF YG + + I ++ R FGFVTF AD V+ +L G PH + + K P
Sbjct: 23 YFEKYGEITECVIMHDPITKRSRGFGFVTFTDADNVEKVLQSG-PHKLDDKNIDAKVAYP 81
Query: 412 YREKSKLVDR 421
+++ KLV R
Sbjct: 82 KKQRQKLVTR 91
>gi|116787926|gb|ABK24693.1| unknown [Picea sitchensis]
Length = 476
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAK 396
+ TE+D NYF +G + DV + Q+ R FGF++F S D V+ +L K
Sbjct: 119 ANLTEEDFKNYFQQFGNITDVVVMYDHNTQRPRGFGFISFDSEDAVESVLQK 170
>gi|156395208|ref|XP_001637003.1| predicted protein [Nematostella vectensis]
gi|156224112|gb|EDO44940.1| predicted protein [Nematostella vectensis]
Length = 291
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398
+++++ EST TE + YF +G V DV IP + R FGFVTFAS + K +L++
Sbjct: 199 KKLFVGRLPEST-TEKTLMEYFAQFGEVTDVYIP-KPFRHFGFVTFASGELAKKVLSQN- 255
Query: 399 PHFVCGA 405
H + G+
Sbjct: 256 -HRISGS 261
>gi|307940742|gb|ADN95985.1| G-strand specific single-stranded telomere-binding protein 3
[Nicotiana tabacum]
Length = 339
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T TED+ N+F+ +G V + I ++ R FGF+ F + V +LA+GN + G
Sbjct: 112 TTMTEDEFKNFFSKFGKVTEYEIIRDHVSKRSRGFGFIVFDNEQVVDNLLAEGNRIDMMG 171
Query: 405 ARVLVK 410
+V +K
Sbjct: 172 TQVEIK 177
>gi|414887335|tpg|DAA63349.1| TPA: hypothetical protein ZEAMMB73_769138 [Zea mays]
Length = 342
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLID-RPHGQHAVIL 314
Y+ ++G+V +A + + G+A G+ + + R+ +ID R +
Sbjct: 25 YFGRFGEVTEA--VIMRDRNTGRARGFGFVVFADSGIAERVTLDKHMIDGRMVEAKKAVP 82
Query: 315 AEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI--- 371
+D +N + PGP T R+I++ A S TE + YF +G + DV +
Sbjct: 83 RDDQSIASKNNSSIGSPGPGRT--RKIFVGGLA-SNVTEVEFRRYFEQFGVITDVVVMYD 139
Query: 372 -PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S D V L K N H + G V VK
Sbjct: 140 HNTQRPRGFGFITYDSEDAVDKALHK-NFHELNGKMVEVK 178
>gi|432899440|ref|XP_004076559.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Oryzias latipes]
Length = 347
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
+H+V++ PK R R+ P +VT +++I++ + +T ED V YF +G VDD
Sbjct: 83 KHSVLIKTIDPKVAFPR--RAQP-KMVTRTKKIFVGGLSANTVVED-VKQYFEQFGKVDD 138
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMI 393
+ + R FGF+TF S D V+ +
Sbjct: 139 AMLMFDKTTNRHRGFGFITFESEDIVEKV 167
>gi|326522138|dbj|BAK04197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 371
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
+DD+ NYF +G V DV IP K R FGFVTF+ I K H + G +V+
Sbjct: 248 KDDLRNYFGGFGGVADVFIPRDPKGSGHRGFGFVTFSDEGVADNIADK--SHEILGCKVI 305
Query: 409 V 409
V
Sbjct: 306 V 306
>gi|259013338|ref|NP_001158364.1| musashi homolog 2 [Saccoglossus kowalevskii]
gi|32307763|gb|AAP79278.1| musashi nrp-1 [Saccoglossus kowalevskii]
Length = 394
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASAD 388
P VT +++I++ + +T T DD+ N+F+ YG V++ ++ + R FGFVTF S D
Sbjct: 103 PKVTRTKKIFVGGLSANT-TADDIKNHFSQYGKVEEAQLMFDKQTNRHRGFGFVTFDSED 161
Query: 389 TVKMI 393
V I
Sbjct: 162 VVDKI 166
>gi|357113956|ref|XP_003558767.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like
[Brachypodium distachyon]
Length = 345
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
T++D+ +YF +G ++DV + C + R FGF+TF S D++ +L + + H + G +
Sbjct: 141 ITKEDLKSYFGKFGAINDVVVICDGLTHKSRGFGFITFDSEDSMLKVL-ENSYHDLNGTK 199
Query: 407 VLVK 410
V K
Sbjct: 200 VETK 203
>gi|357616936|gb|EHJ70495.1| hypothetical protein KGM_10405 [Danaus plexippus]
Length = 441
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
Y+E++G+V+ L + G+ + A + +R + + H ++
Sbjct: 138 YFEQFGEVVMV--QLKRDKNGSFKGFGFIRF-ATYASQMRALAQRHNIDG--------RW 186
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGF 381
++ R S G + ++++ E T DD+ +YF+ +G V DV +P + R FGF
Sbjct: 187 VDVRIPNSKEGVVPQMPCKVFVGRCTED-MTADDLRDYFSRFGEVTDVFVP-RPFRAFGF 244
Query: 382 VTFASADTVKMILAKGNPHFVCGARVLV 409
VTF + + + G H + GA V V
Sbjct: 245 VTFLDPEVAQSLC--GEDHVIKGASVSV 270
>gi|345494041|ref|XP_001606007.2| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Nasonia
vitripennis]
Length = 367
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV NYF +GP++D + + R FGFVTF S D
Sbjct: 106 MVTRTKKIFVGGLSAPT-TLEDVKNYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 164
Query: 390 VKMI 393
V +
Sbjct: 165 VDKV 168
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
Q I+A +P + N DPG + G + T P + + YF YG + +
Sbjct: 4 QSQEIVASGSPAEVPN-----DPGKMFIGGLS-WQTSP-------ESLREYFTKYGDITE 50
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK---PYREKSKLVDR 421
V + ++ R FGF+TFA +V +LA+G H + G ++ K P R K+V R
Sbjct: 51 VMVMKDPTTRRSRGFGFITFADPASVDKVLAQGT-HELDGKKIDPKVAFPRRTHPKMVTR 109
>gi|297845880|ref|XP_002890821.1| hypothetical protein ARALYDRAFT_313613 [Arabidopsis lyrata subsp.
lyrata]
gi|297336663|gb|EFH67080.1| hypothetical protein ARALYDRAFT_313613 [Arabidopsis lyrata subsp.
lyrata]
Length = 295
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 151 GFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYH 204
G+ SDC Y+ L + R G + C +F G CK GSNC++YH
Sbjct: 146 GWGSDCCYNHPPLHEIPYRIGNKL----------DCKFFKAGSCKRGSNCQFYH 189
>gi|405960558|gb|EKC26474.1| RNA-binding protein Musashi-like protein Rbp6 [Crassostrea gigas]
Length = 281
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 316 EDAPKYLENRN-------ERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
E+ P L+N+ R +VT +++I++ + +T T +DV NYF+ YG ++D
Sbjct: 84 ENGPHILDNKTVDPKVAFPRKAQPKMVTRTKKIFVGGLSAAT-TVEDVKNYFSQYGKIED 142
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMI 393
+ + R FGFVTF + D V +
Sbjct: 143 AMLMFDKTTNRHRGFGFVTFENEDVVDKV 171
>gi|356547577|ref|XP_003542187.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 352
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
++ +ED++ N+F+ YG V + I ++ R FGF+ F S V ILA GN + G
Sbjct: 115 TSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMGG 174
Query: 405 ARVLVK 410
+V +K
Sbjct: 175 TQVEIK 180
>gi|384254104|gb|EIE27578.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 412
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 359 YFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414
YF YG V D +P Q R GFVTFA+AD+V+ +++ +PH + G + +
Sbjct: 153 YFEQYGSVQDAYMPKDATKQSHRGIGFVTFANADSVEAVMS--SPHSMNGQELAIDRATP 210
Query: 415 KSKLVD 420
K K D
Sbjct: 211 KDKPSD 216
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQ-----QKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
TE+DV YF +G V DV +P + R FGFVTF + V I A G H + G+
Sbjct: 299 TENDVKEYFTRFGYVMDVYLPRDKVNRSEHRGFGFVTFETDGAVLRIHAHGQ-HQIKGSV 357
Query: 407 VLVK---PYREKSKLVD 420
V + P RE+ D
Sbjct: 358 VAIDSAVPRREEGTRTD 374
>gi|442760483|gb|JAA72400.1| Putative splicing factor [Ixodes ricinus]
Length = 138
Score = 41.2 bits (95), Expect = 1.4, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ---KRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T+D + NYF+ +G V D + C + R FGFVTF V +LA G PH + G V
Sbjct: 22 TQDGLLNYFSRFGEVVDSVVMCNETGRSRGFGFVTFRDPSCVATVLA-GGPHQLDGRTV 79
>gi|294944203|ref|XP_002784138.1| hypothetical protein Pmar_PMAR003392 [Perkinsus marinus ATCC 50983]
gi|239897172|gb|EER15934.1| hypothetical protein Pmar_PMAR003392 [Perkinsus marinus ATCC 50983]
Length = 292
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHG 205
R+ +S NA K C ++ GFCK GS CRY HG
Sbjct: 87 RQVRSTNAFFKTKVCSFYESGFCKLGSKCRYAHG 120
>gi|118344010|ref|NP_001071830.1| Tardbp protein [Ciona intestinalis]
gi|70571316|dbj|BAE06721.1| Ci-Tardbp [Ciona intestinalis]
Length = 440
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 32/204 (15%)
Query: 220 PDGFNDDHLFSPGSLEKLELEIIELLKARR-----------GNPISIASLPML-YYEKYG 267
P G N P + K+E E ++ ++++R G P IA + Y+ KYG
Sbjct: 104 PKGGNKVRNDFPDNKRKMEDEDVQSIRSKRPAQKCSDLIVLGLPWKIAEDDLKEYFAKYG 163
Query: 268 KVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRN 326
+++ L + +GK+ GY + + + L R H I+ E ++ + +
Sbjct: 164 ELVMV---LVKRDENGKSRGYGFIRFSSYEVQELVLSQR----H--IIGE---RWCDVKI 211
Query: 327 ERS-DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFA 385
S D P V S +I++ E T+D++ YF +G VDDV IP R F FVTF
Sbjct: 212 PHSKDQKPTV--SSKIFVGRITEK-MTKDEIRQYFEQFGDVDDVYIPI-PFRAFAFVTFR 267
Query: 386 SADTVKMILAKGNPHFVCGARVLV 409
++ ++ G + G V +
Sbjct: 268 DSNVAANLI--GEDQVINGVSVYI 289
>gi|240849376|ref|NP_001155365.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
gi|49257602|gb|AAH74212.1| Unknown (protein for MGC:83385) [Xenopus laevis]
gi|157415960|gb|ABV54637.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
Length = 326
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 311 AVILAEDAP---KYLENRNERSDPGPIVTGSRQIYLTF-PAESTFT--------EDDVSN 358
IL +DA K LE++ R D G ++ + + + P + F ED +
Sbjct: 109 GFILFKDAASVDKVLEHKEHRLD-GRLIDPKKAMAMKKEPIKKIFVGGLNPEAGEDKIRE 167
Query: 359 YFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
YF T+G ++ V +P ++R F F+TF + VK IL K H V G++ +K
Sbjct: 168 YFETFGEIEAVELPMDPKTNKRRGFVFITFKEEEPVKKILEK-KFHNVSGSKCEIK 222
>gi|302785051|ref|XP_002974297.1| hypothetical protein SELMODRAFT_101375 [Selaginella moellendorffii]
gi|302807955|ref|XP_002985671.1| hypothetical protein SELMODRAFT_122630 [Selaginella moellendorffii]
gi|300146580|gb|EFJ13249.1| hypothetical protein SELMODRAFT_122630 [Selaginella moellendorffii]
gi|300157895|gb|EFJ24519.1| hypothetical protein SELMODRAFT_101375 [Selaginella moellendorffii]
Length = 187
Score = 41.2 bits (95), Expect = 1.6, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAK 396
ST TE++ YF +G + D + Q+ R FGF+TF S D+V+ +L K
Sbjct: 118 STVTEEEFRGYFEQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVEAVLMK 169
>gi|356501604|ref|XP_003519614.1| PREDICTED: uncharacterized protein LOC100814628 [Glycine max]
Length = 477
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDA 318
Y+ KYG+V++A + + G+A G+ + A + R+I H V +
Sbjct: 25 YFGKYGEVIEA--VIMRDRTTGRARGFGFV-VFADPSAAERVIMDKHIIDGRTVEAKKAV 81
Query: 319 PKYLE---NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI---- 371
P+ + NR S G G + ST TE D YF+ +G + DV +
Sbjct: 82 PRDDQQTINRQTGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDH 141
Query: 372 PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 142 NTQRPRGFGFITYDSEEAVDRVLYK-TFHELNGKMVEVK 179
>gi|224284234|gb|ACN39853.1| unknown [Picea sitchensis]
Length = 473
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405
T TE+D YF +G + DV + Q+ R FGF+T+ S D V +L K H + G
Sbjct: 116 TVTENDFRKYFEQFGTITDVVVMYDHSTQRPRGFGFITYDSEDAVDQVLQK-TFHDLNGK 174
Query: 406 RVLVK 410
V VK
Sbjct: 175 MVEVK 179
>gi|171451948|dbj|BAG15902.1| musashi [Dugesia japonica]
Length = 327
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T + + NYF YG + DV I ++ R FGFVTF T++ IL +PHF+ ++
Sbjct: 29 TLETLRNYFQNYGDIKDVMILKDPVTKRSRGFGFVTFIEYSTIEKILL-NSPHFLDSKKI 87
Query: 408 LVK-PYREKSKLVDR 421
K +K LVD+
Sbjct: 88 DPKIAIPKKPDLVDK 102
>gi|187607268|ref|NP_001120028.1| heterogeneous nuclear ribonucleoprotein A3 [Xenopus (Silurana)
tropicalis]
gi|165971520|gb|AAI58334.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
gi|170284841|gb|AAI61197.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
Length = 383
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++E++GK+ + + Q G+ + + RPH ++ PK
Sbjct: 46 HFEQWGKLTDCV-VMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVE---PKR 101
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + + PG +T ++I++ E T E + +YF +YG ++ + + +KR
Sbjct: 102 AVSREDSARPGAHLT-VKKIFVGGIKEDT-EEYHLRDYFQSYGKIETIEVMEDRQSGKKR 159
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 160 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 199
>gi|444723183|gb|ELW63844.1| RNA-binding protein Musashi like protein 1 [Tupaia chinensis]
Length = 324
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
R+ P +VT +++I++ + +T T DDV YF +G VDD + + R FGFVT
Sbjct: 93 RAQP-KMVTRTKKIFVGGLSVNT-TVDDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 150
Query: 384 FASADTVKMI 393
F S D V+ +
Sbjct: 151 FESEDIVEKV 160
>gi|426254057|ref|XP_004020702.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Ovis aries]
Length = 325
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDD---VRIPCQQ-KRMFGFVTFASADTVKMILAKGNPHFVCG 404
S TE+ + NY+ +G + D +R P Q R FGFVTF+S V +A PH + G
Sbjct: 30 SETTEETLWNYYQQWGYLTDCVVIRDPASQTSRRFGFVTFSSVAEVDAAMA-ARPHSIDG 88
Query: 405 ARVLVK 410
RV K
Sbjct: 89 KRVTPK 94
>gi|357133920|ref|XP_003568569.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 366
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVTFASAD 388
P+VTG + P E+ DD+ +YF +G + D IP KR FGFVTFA D
Sbjct: 227 PLVTGKKIFVGRLPQEAN--TDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFAD-D 283
Query: 389 TVKMILAKGNPHFVCGARVLV 409
V +A+ H + G V V
Sbjct: 284 GVADRVAR-RSHEILGQEVAV 303
>gi|241833927|ref|XP_002414968.1| splicing factor, putative [Ixodes scapularis]
gi|215509180|gb|EEC18633.1| splicing factor, putative [Ixodes scapularis]
Length = 148
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ---KRMFGFVTFASADTVKMILAKGNPH 400
T+D + NYF+ +G V D + C + R FGFVTF V +LA G PH
Sbjct: 22 TQDGLLNYFSRFGEVVDSVVMCNETGRSRGFGFVTFRDPSCVATVLA-GGPH 72
>gi|414591910|tpg|DAA42481.1| TPA: hypothetical protein ZEAMMB73_522608 [Zea mays]
Length = 449
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 32/168 (19%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSL-----TKLLARLKNSVRLIDR---------P 306
Y+ ++G+V +A + + G+A G+ + R+ +ID P
Sbjct: 26 YFGRFGEVTEA--VIMRDRSTGRARGFGFVVFADAAVAERVTTEKHMIDGRMVEAKKAVP 83
Query: 307 HGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
H+++ +A PGP T R+I++ S TE D YF +G +
Sbjct: 84 RDDHSIVTKSNASSI-------GSPGPGRT--RKIFVG-GLPSNVTEADFRRYFEQFGVI 133
Query: 367 DDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
DV + Q+ R FGF+T+ S D V L K + H + G V VK
Sbjct: 134 TDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK-SFHELNGKMVEVK 180
>gi|224496034|ref|NP_001139026.1| tetratricopeptide repeat protein 31 [Danio rerio]
Length = 474
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 289 LTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAE 348
LT+L + S++L+++ + AV+ A K PGP +
Sbjct: 300 LTELGYDEEQSIQLLEKYNTVQAVV----AAKASNQDCALLQPGPCNS-----LWVGNVT 350
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
+ TE + + F YG +D +R+ +R FV F +A+ + K N HF+ R++
Sbjct: 351 TELTEKHLRDLFKIYGEIDSIRV--LHERFCAFVNFKNANMASRAMEKLNGHFIENTRLV 408
Query: 409 VKPYREKSKLVDRKYQERMESPMYFSP 435
V + DR+ Q + +P P
Sbjct: 409 V-------RYPDRRIQRVLPTPAMQQP 428
>gi|325185730|emb|CCA20211.1| conserved unknown protein putative [Albugo laibachii Nc14]
Length = 465
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 328 RSDPGPIVTGSRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFV 382
R + G ++T S+++++ P + TE D YF +G + D + Q+ R FGFV
Sbjct: 197 RGNSGGVITESKKVFVGGLPP--SVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFV 254
Query: 383 TFASADTVKMILAKGNPHFVCGARVLVK 410
TF V +++K H + G V +K
Sbjct: 255 TFEEEGAVAEVISK--THELHGKVVEIK 280
>gi|255563582|ref|XP_002522793.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223538031|gb|EEF39644.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 348
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TED+ +F+ YG V + +I + R FGF+ F S +TV +L+ GN + G
Sbjct: 116 SSVTEDEFKGFFSKYGQVVEHQIIRDHETNRSRGFGFIIFDSEETVDEMLSNGNMIDMAG 175
Query: 405 ARVLVK 410
+V +K
Sbjct: 176 TQVEIK 181
>gi|197209735|dbj|BAG68909.1| RNA binding protein [Arabidopsis thaliana]
Length = 359
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 28/173 (16%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTK------LLARLKNSVRLIDRPHG------ 308
Y+ +YG VL+A + + + GK G+ + ++ L+++ ++ +P
Sbjct: 25 YFSRYGAVLEA--VVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIR 82
Query: 309 QHAVILAEDAPKYLENRNERSDPG-------PIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+H + + ++LE + ++ + G + + S++I++ + +T TE++ +YF
Sbjct: 83 KHEIYQQPFSMQFLERKMQQMNGGLREMSSNGVTSRSKKIFVGGLSSNT-TEEEFKSYFE 141
Query: 362 TYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+G DV + + R FGFVT+ S D+V++++ + N H + RV VK
Sbjct: 142 RFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM-QSNFHELSDKRVEVK 193
>gi|147903976|ref|NP_001087778.1| MGC84815 protein [Xenopus laevis]
gi|51703946|gb|AAH81212.1| MGC84815 protein [Xenopus laevis]
Length = 291
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T +D++ YF +G V D I + R F FVTF D+V K+ILA+ PH + G +
Sbjct: 115 TNEDLAEYFGKFGNVTDASIVVAKDTNTSRGFAFVTFDDTDSVDKVILAR--PHMIGGHK 172
Query: 407 VLVKPYREKSKLVDRKYQER 426
V+ + +L RK Q +
Sbjct: 173 ADVRKALSREEL--RKVQTK 190
>gi|443692084|gb|ELT93758.1| hypothetical protein CAPTEDRAFT_170758 [Capitella teleta]
Length = 238
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+ K+G+V A L Q G++ G+ + + R+I++ QH + PK
Sbjct: 82 YFSKFGEVTDA--TLKTDQNTGRSRGFGFVTFVDSTCVN-RVIEQT--QHTLHGKNIDPK 136
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQK 376
+ R R I G + ED++ +F+ YG V++V +P Q+
Sbjct: 137 RAKARPGREPVKKIFVGG--------LDPEVPEDEIRQHFSKYGKVEEVELPFDRSKNQR 188
Query: 377 RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
R F FV+F + + V + + H + G V
Sbjct: 189 RFFCFVSFDTGEAVDALCQESEKHVLGGKNV 219
>gi|294897363|ref|XP_002775948.1| hypothetical protein Pmar_PMAR029055 [Perkinsus marinus ATCC 50983]
gi|239882315|gb|EER07764.1| hypothetical protein Pmar_PMAR029055 [Perkinsus marinus ATCC 50983]
Length = 3046
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 172 RRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHG 205
R+ +S NA K C ++ G CK GS CRY HG
Sbjct: 86 RQIRSTNAFFKTKMCSFYESGCCKLGSKCRYAHG 119
>gi|356527120|ref|XP_003532161.1| PREDICTED: uncharacterized protein LOC100805131 [Glycine max]
Length = 513
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T ++I++ ST TE D YF+ +G + DV + Q+ R FGF+T+ S
Sbjct: 134 PGPGRT--KKIFVG-GLPSTITESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 190
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
+ V +L K H + G V VK
Sbjct: 191 EEAVDRVLYK-TFHELNGKMVEVK 213
>gi|255641298|gb|ACU20926.1| unknown [Glycine max]
gi|255642525|gb|ACU21526.1| unknown [Glycine max]
Length = 213
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 331 PGPIVT-------GSRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM---- 378
PGPI S++I++ P E+T DD+ YF +G + DV +P KR
Sbjct: 65 PGPIYGRGDPSRRTSKKIFVGRLPPEAT--SDDLRQYFGRFGRILDVYVPRDPKRTGHRG 122
Query: 379 FGFVTFASADTVKMILAKGNPHFVCGARVLV 409
FGFVTFA + + H +CG +V +
Sbjct: 123 FGFVTFAEDGVADRVSRRS--HEICGHQVAI 151
>gi|158296251|ref|XP_001688945.1| AGAP006656-PB [Anopheles gambiae str. PEST]
gi|157016421|gb|EDO63951.1| AGAP006656-PB [Anopheles gambiae str. PEST]
Length = 327
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 307 HGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
HG H + + PK R R+ P +VT +++I++ + T T +DV +YF +GP+
Sbjct: 46 HGTHELDGKKIDPKVAFPR--RAHPK-MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPI 101
Query: 367 DDVRI----PCQQKRMFGFVTFASADTVKMI 393
+D + + R FGFVTF S D V +
Sbjct: 102 EDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 132
>gi|402074044|gb|EJT69596.1| hypothetical protein GGTG_13212 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 930
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 179 AELPVKTCHYFNKGFCKHGSNCRYYH 204
A P+K CHYF G C HG++CR+ H
Sbjct: 37 APKPIKPCHYFAAGHCAHGNSCRFAH 62
>gi|356566592|ref|XP_003551514.1| PREDICTED: uncharacterized protein LOC100794390 [Glycine max]
Length = 479
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--------GQHAV 312
Y+ KYG+V++A + + G+A G+ + A + R+I H + AV
Sbjct: 25 YFGKYGEVIEA--VIMRDRVTGRARGFGFV-VFADPSVAERVIMDKHIIDGRTVEAKKAV 81
Query: 313 ILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
+ ++ + + PGP T ++I++ ST TE D YF+ +G + DV +
Sbjct: 82 PRDDQQNINRQSGSAHASPGPGRT--KKIFVG-GLPSTITESDFKMYFDQFGTITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYDSEEAVDRVLYK-TFHELNGKMVEVK 179
>gi|340056255|emb|CCC50585.1| predicted zinc finger protein [Trypanosoma vivax Y486]
Length = 1002
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYH 204
P C +FNKG CKHG NC++ H
Sbjct: 971 FPGGLCRFFNKGHCKHGGNCQFVH 994
>gi|145347002|ref|XP_001417969.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578197|gb|ABO96262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 218
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 348 ESTFTEDDVSNYFNTYGPVDDV---RIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVC 403
+ T E V N+F+ +GPV +V R P Q R FGF+TF D+ K +L + H +
Sbjct: 21 DRTVDEGVVRNFFSQFGPVMEVLVMRDPHNHQSRGFGFITFQRDDSAKQVL-QNRYHDML 79
Query: 404 GARVLVK 410
G RV VK
Sbjct: 80 GKRVEVK 86
>gi|125577795|gb|EAZ19017.1| hypothetical protein OsJ_34549 [Oryza sativa Japonica Group]
Length = 481
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
PGP T ++I++ A ST TE D YF +G + DV + Q+ R FGF+T+ S
Sbjct: 114 PGPSRT--KKIFVGGLA-STVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDS 170
Query: 387 ADTVKMILAKGNPHFVCGARVLVK 410
D V L K H + G V VK
Sbjct: 171 EDAVDKALFK-TFHELNGKMVEVK 193
>gi|343455562|gb|AEM36348.1| At1g58470 [Arabidopsis thaliana]
Length = 360
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 28/173 (16%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTK------LLARLKNSVRLIDRPHG------ 308
Y+ +YG VL+A + + + GK G+ + ++ L+++ ++ +P
Sbjct: 25 YFSRYGAVLEA--VVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIR 82
Query: 309 QHAVILAEDAPKYLENRNERSDPG-------PIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+H + + ++LE + ++ + G + + S++I++ + +T TE++ +YF
Sbjct: 83 KHEIYHQPFSMQFLERKMQQMNGGLREMSSNGVASRSKKIFVGGLSSNT-TEEEFKSYFE 141
Query: 362 TYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+G DV + + R FGFVT+ S D+V++++ + N H + RV VK
Sbjct: 142 RFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM-QSNFHELSDKRVEVK 193
>gi|61402551|gb|AAH91819.1| LOC553339 protein, partial [Danio rerio]
Length = 317
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 289 LTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAE 348
LT+L + S++L+++ + AV+ A+ + + D + G
Sbjct: 143 LTELGYDEEQSIQLLEKYNTVQAVVAAKASNQ---------DCALLQPGPCNSLWVGNVT 193
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
+ TE + + F YG +D +R+ +R FV F +A+ + K N HF+ R++
Sbjct: 194 TELTEKHLRDLFKIYGEIDSIRV--LHERFCAFVNFKNANMASRAMEKLNGHFIENTRLV 251
Query: 409 VKPYREKSKLVDRKYQERMESPMYFSP 435
V + DR+ Q + +P P
Sbjct: 252 V-------RYPDRRIQRVLPTPAMQQP 271
>gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera]
Length = 3142
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 244 LLKARRGNPISIASLPMLYYEKYGK 268
L + RR NPISIASLPM++YE+YG+
Sbjct: 1539 LHETRRINPISIASLPMIHYERYGR 1563
>gi|308465164|ref|XP_003094843.1| CRE-HRP-1 protein [Caenorhabditis remanei]
gi|308246407|gb|EFO90359.1| CRE-HRP-1 protein [Caenorhabditis remanei]
Length = 344
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 286 GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYL 343
G+ A+ + + RPH V P+ +NR+E + ++++Y+
Sbjct: 65 GFGFVTFTAKTEVDAAMKQRPHVIDGKTVDPKRAVPRDDKNRSESN------VSTKRLYV 118
Query: 344 TFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGN 398
+ E ED +++YF+ YG V I Q+ R FGFVTF D+V + +L K
Sbjct: 119 SGVRED-HNEDMLTDYFSKYGNVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK-- 175
Query: 399 PHFVCGARVLVKPYREKSKL 418
H V G R V+ K ++
Sbjct: 176 SHMVNGHRCDVRKGLSKDEM 195
>gi|19114443|ref|NP_593531.1| nucleolar protein required for rRNA processing [Schizosaccharomyces
pombe 972h-]
gi|6226864|sp|P41891.2|GAR2_SCHPO RecName: Full=Protein gar2
gi|7523472|emb|CAB86413.1| nucleolar protein required for rRNA processing [Schizosaccharomyces
pombe]
Length = 500
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 343 LTFPAESTF--------TEDDVSNYFNTYGPVDDVRIPC--QQKRM--FGFVTFASADTV 390
L+ P+++ F TEDD+S F G + +R+P Q R+ FG+VTF+ D+
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 391 KMILAKGNPHFVCG 404
K + + N HF+ G
Sbjct: 421 KKCV-EMNGHFIAG 433
>gi|440910144|gb|ELR59970.1| hypothetical protein M91_04889, partial [Bos grunniens mutus]
Length = 359
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 310 HAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV 369
H++ APK R + PG +VT +++++ E T + + +YF YG ++ +
Sbjct: 94 HSIDGKRVAPKRAVPREDYGIPGALVT-VKKLFVCKIGEDT-EKHHLRDYFGKYGKINAI 151
Query: 370 RI----PCQQKRMFGFVTFASADTV-KMILAK 396
I +KR FGFVTF D V K++L K
Sbjct: 152 EIISDRESGRKRGFGFVTFDDHDPVDKLVLQK 183
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 263 YEKYGKVLQAGGYLTESQRHGK-AGYSLTKLLARLKNSVRLIDRPHGQ----HAVILAED 317
+EK G+VL T+ ++ K +G+ + AR ++++ I G+ HAV +
Sbjct: 536 FEKCGRVLAVTLSKTKDKKVEKNSGFGFVEY-ARHEDAINAIKTLQGKVIDGHAVQIEIS 594
Query: 318 APKYL-ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-- 374
PK E+ ER + ++ + P E+ E V F TYG + VR+P +
Sbjct: 595 QPKVKDEDHKERKEIEEHKVSNKLLVKNVPFETNIKE--VRELFRTYGTLRGVRLPKKVD 652
Query: 375 -QKRMFGFVTFASA-DTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
Q + F FV +A+ + + A N HF R L+ Y + ++L
Sbjct: 653 GQNKGFAFVEYATKQEAANAMAALKNSHFY--GRHLIIEYAKDTEL 696
>gi|113931574|ref|NP_001039236.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
gi|89272441|emb|CAJ82657.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
Length = 313
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 353 EDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
ED + YF T+G ++ + +P ++R F F+TF + VK IL K H V G++
Sbjct: 149 EDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK-KFHNVSGSKCE 207
Query: 409 VK 410
+K
Sbjct: 208 IK 209
>gi|161084519|ref|NP_001097631.1| RNA-binding protein 6, isoform B [Drosophila melanogaster]
gi|158028569|gb|ABW08559.1| RNA-binding protein 6, isoform B [Drosophila melanogaster]
Length = 499
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 113 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 171
Query: 390 VKMI 393
V +
Sbjct: 172 VDKV 175
>gi|18419943|ref|NP_568011.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|238481137|ref|NP_001154290.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15081787|gb|AAK82548.1| AT4g36960/C7A10_400 [Arabidopsis thaliana]
gi|23308345|gb|AAN18142.1| At4g36960/C7A10_400 [Arabidopsis thaliana]
gi|332661324|gb|AEE86724.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332661325|gb|AEE86725.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 379
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVT 383
R +P G++ P E++ DD+ +YF +G + D IP KR FGFVT
Sbjct: 230 RGEPTTRGIGNKIFVGRLPQEASV--DDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 384 FASADTVKMILAKGNPHFVCGARVLV 409
FA + + H +CG V +
Sbjct: 288 FAENGVADRVARRS--HEICGQEVAI 311
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ +E D ++F YG + D+ +P +Q R GF+TF+SAD+V+ ++ + H + G
Sbjct: 100 SSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME--DTHDLGG 157
Query: 405 ARVLV 409
V V
Sbjct: 158 TTVAV 162
>gi|345311474|ref|XP_001513207.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ornithorhynchus anatinus]
Length = 480
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + +YF +G ++ + +P ++R F F+TF + VK IL K H V G++
Sbjct: 308 TEDKIRDYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK-KFHNVSGSKC 366
Query: 408 LVK 410
+K
Sbjct: 367 EIK 369
>gi|348536391|ref|XP_003455680.1| PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like
[Oreochromis niloticus]
Length = 431
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVSESFTQM---FGQTSPDGFNDDHLFSPGSLEKLELEI 241
TC YF G CK G NCRY H L S M F Q F D F K
Sbjct: 23 TCRYFMHGLCKEGENCRYSHDLTSSKPASMICKFFQKGNCAFGDRCRFEHSKPVK----- 77
Query: 242 IELLKARRGNPISIASLP 259
E L A + P++ SLP
Sbjct: 78 NEELPASQTLPLASVSLP 95
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++++ YF YG V D + + R FGFVTFA D V L G PH + G +
Sbjct: 30 TQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPDNVDRALENG-PHTLDGRTI 88
Query: 408 LVKPYREKS 416
KP +S
Sbjct: 89 DPKPCNPRS 97
>gi|255574661|ref|XP_002528240.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223532357|gb|EEF34155.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 456
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TE D YF+ +G + DV + Q+ R FGF+T+ S + V +L K H + G
Sbjct: 116 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHK-TFHELNG 174
Query: 405 ARVLVK 410
V VK
Sbjct: 175 KMVEVK 180
>gi|449460598|ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
sativus]
gi|449502733|ref|XP_004161727.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
sativus]
Length = 377
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGA 405
T TE ++F YG + D+ +P Q R GF+TFAS+D+V+ ++A + H + G+
Sbjct: 101 TVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMA--DTHELGGS 158
Query: 406 RVLV 409
V+V
Sbjct: 159 NVVV 162
>gi|663262|emb|CAA88179.1| gar2 [Schizosaccharomyces pombe]
Length = 500
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 343 LTFPAESTF--------TEDDVSNYFNTYGPVDDVRIPC--QQKRM--FGFVTFASADTV 390
L+ P+++ F TEDD+S F G + +R+P Q R+ FG+VTF+ D+
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 391 KMILAKGNPHFVCG 404
K + + N HF+ G
Sbjct: 421 KKCV-EMNGHFIAG 433
>gi|356541820|ref|XP_003539370.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 365
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 331 PGPIVT------GSRQIYLT-FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM----F 379
PGPI S++I++ P E+T DD+ YF +G + DV +P KR F
Sbjct: 217 PGPIYGRGDARRTSKKIFVGRLPPEAT--SDDLRQYFGRFGRILDVYVPRDPKRAGHRGF 274
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARVLV 409
GFVTFA + + H +CG V +
Sbjct: 275 GFVTFAEDGAADRVSRR--SHEICGHPVAI 302
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGA 405
+ TE ++F YG + D+ +P Q R GF+TFASAD+V+ ++++ H + G+
Sbjct: 102 SVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMSE--THELGGS 159
Query: 406 RVLV 409
V+V
Sbjct: 160 AVVV 163
>gi|303275576|ref|XP_003057082.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461434|gb|EEH58727.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 928
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 234 LEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAG------GYLTESQRHGKAGY 287
L ++ EI +LL AR +SIA LP Y + Y K L Y ES R GK G
Sbjct: 181 LRFVKYEIRQLLLAR--GSLSIAQLPEEYLKCYRKPLTTALKVLDSQYTPESARSGKPGG 238
Query: 288 SLTK------LLARLKNSVRLIDRPHGQHAVILA 315
K L L + + + RPHGQH ++ A
Sbjct: 239 RARKSTLGAFLREHLMDVIEVRQRPHGQHVIVAA 272
>gi|224067168|ref|XP_002302389.1| predicted protein [Populus trichocarpa]
gi|222844115|gb|EEE81662.1| predicted protein [Populus trichocarpa]
Length = 172
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMI 393
+++I++ A S+ TE+ NYF +G DV + + R FGFVTF S ++V +
Sbjct: 92 TKKIFVGGLA-SSLTEEQFKNYFEQFGRTVDVVVMQDSLTNRPRGFGFVTFDSEESVDKV 150
Query: 394 LAKGNPHFVCGARVLVK 410
L G+ H + G RV VK
Sbjct: 151 LLIGS-HELNGKRVEVK 166
>gi|313231345|emb|CBY08460.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + ST + D++ YF+ YG V++ + + R FGFVTF S D
Sbjct: 9 MVTRTKKIFVGGLSAST-VQADLTAYFSKYGKVEEAMLMFDRQTNRHRGFGFVTFDSEDA 67
Query: 390 VKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYF 433
V+ ++ + + H + V K + K ++ + Q+RM + +
Sbjct: 68 VENVV-EIHYHEINNKTVECKKAQPKDVMMPNQSQKRMANQAFL 110
>gi|348515237|ref|XP_003445146.1| PREDICTED: poly [ADP-ribose] polymerase 12-like [Oreochromis
niloticus]
Length = 942
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 144 HVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYY 203
HVN NT FSSD + +D + +R +S+ + + C YF KG CKH C
Sbjct: 264 HVNRENTHFSSDIHAADDEAAKANKGHNKRQRSIRDKTEI--CMYFIKGHCKHEDRCYKA 321
Query: 204 H 204
H
Sbjct: 322 H 322
>gi|323456748|gb|EGB12614.1| hypothetical protein AURANDRAFT_60570 [Aureococcus anophagefferens]
Length = 940
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 169 RAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHG 205
R R N E + C +F G CKHG+NC+Y H
Sbjct: 565 RQSERDSERNGEAAGEVCRFFRMGRCKHGANCKYVHA 601
>gi|116787897|gb|ABK24684.1| unknown [Picea sitchensis]
Length = 375
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T TED+ +YF+ +G V + +I + R FGF+TF S V+ I+++G + G
Sbjct: 142 TTITEDEFKDYFSKFGKVAEHQIMQDRSTGRSRGFGFITFDSEQVVEEIISQGKMIELGG 201
Query: 405 ARVLVK 410
+V +K
Sbjct: 202 KQVEIK 207
>gi|261488392|emb|CBH19571.1| RNA recognition motif containing protein [Oryza sativa Indica
Group]
Length = 188
Score = 40.4 bits (93), Expect = 2.4, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
EDD ++F YGPV D +I ++ R FGF+ F+S V +LA G + +L
Sbjct: 124 EDDFKHFFQKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGKYDLI----LL 179
Query: 409 VKPYREKSK 417
V+ +R + +
Sbjct: 180 VQTWRSRKQ 188
>gi|255537972|ref|XP_002510051.1| DAZ-associated protein, putative [Ricinus communis]
gi|223550752|gb|EEF52238.1| DAZ-associated protein, putative [Ricinus communis]
Length = 370
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ TE+ +YF ++G + DV + + R FGFVTF S D+V + K H + G
Sbjct: 134 SSLTEEQFKDYFESFGKIVDVVVMQDSSTNRPRGFGFVTFDSEDSVDKAMEK-TFHELMG 192
Query: 405 ARVLVK 410
RV VK
Sbjct: 193 KRVEVK 198
>gi|326427925|gb|EGD73495.1| hypothetical protein PTSG_05199 [Salpingoeca sp. ATCC 50818]
Length = 389
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S T D++ YF+++GPV++ + Q+ + +GFVTF+ ++V LA H+V G
Sbjct: 21 SKTTGDELKAYFSSFGPVEEAVVIFDHDTQESKRYGFVTFSELESVHAALAAPY-HYVDG 79
Query: 405 ARV 407
R+
Sbjct: 80 QRI 82
>gi|392558318|gb|EIW51507.1| RNA-binding protein Prp24 [Trametes versicolor FP-101664 SS1]
Length = 1049
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 323 ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK---RMF 379
E R ER+D R+IY+ ++ T++D+ F TYG V DVR+ K + F
Sbjct: 789 ERRKERTDSD---ANEREIYIAGLSK-LVTKEDLETLFKTYGNVKDVRMILDDKGKSKGF 844
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMY 432
F+ F + + LA N +K R L D + + + ++P Y
Sbjct: 845 AFIEFTTEPEARAALAANNHE--------LKKRRMAVTLADSRVKPKNKAPGY 889
>gi|390360718|ref|XP_780859.3| PREDICTED: TAR DNA-binding protein 43-like [Strongylocentrotus
purpuratus]
Length = 476
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412
EDD+ YF G V DV IP ++ R F FVT +A + ++ G H + G VL+
Sbjct: 207 EDDIYQYFAKIGEVTDVFIP-KEFRGFAFVTLENAQIAQSLI--GQDHIINGNSVLINYA 263
Query: 413 REKSKLVDRKYQERMESP 430
K+K +Q+ P
Sbjct: 264 DPKNKQGQNPHQQGGRPP 281
>gi|391332405|ref|XP_003740625.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like
[Metaseiulus occidentalis]
Length = 259
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 330 DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFA 385
DPG + G + T P + + YF+ +G + +V + ++ R FGFVTFA
Sbjct: 20 DPGKMFIGGLS-WQTAP-------EGLREYFSKFGEISEVMVMKDPTTRRSRGFGFVTFA 71
Query: 386 SADTVKMILAKGNPHFVCGARV---LVKPYREKSKLVDR 421
+V+ +LA G PH + G ++ + P R K+V R
Sbjct: 72 DPASVEKVLANG-PHELDGKKIDPKIAFPKRAHPKMVTR 109
>gi|148905890|gb|ABR16107.1| unknown [Picea sitchensis]
gi|224285605|gb|ACN40521.1| unknown [Picea sitchensis]
gi|224285970|gb|ACN40697.1| unknown [Picea sitchensis]
Length = 371
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
++ TED+ +YF+ +G V + +I + R FGFVTF S + V+ IL+ G + G
Sbjct: 148 TSITEDEFKDYFSKFGKVLEHQIMQDHGTGRSRGFGFVTFDSEEAVEEILSHGKMCELGG 207
Query: 405 ARVLVKPYREKSKL 418
+V +K K L
Sbjct: 208 KQVEIKKAEPKKAL 221
>gi|302805284|ref|XP_002984393.1| hypothetical protein SELMODRAFT_445909 [Selaginella moellendorffii]
gi|300147781|gb|EFJ14443.1| hypothetical protein SELMODRAFT_445909 [Selaginella moellendorffii]
Length = 624
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 21 NVTKIIGYLLL---QEQEMIHLAMSPDVVIQEVVYKAKAELQQLAMKSASSPISPSMNSP 77
+VT+ + ++ ++Q+ +H A+SP +K ++LA+ +S +SP N P
Sbjct: 222 HVTRFVALGVVGNDKKQKYLH-ALSP-------TPASKLSSEELAVTPPNSTLSPYENRP 273
Query: 78 VNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNS--------DFVALGYSDSINEL 129
S + P S P S + + +W + ++ + DFV G +
Sbjct: 274 ----SSKKRPLSEMTPSSQSEGQ---FWRYDTSDAKKTKRVEGACFDFVTKGSCARGDRC 326
Query: 130 QSQTQF-----LSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVK 184
+ + F + + + G+ S+C Y ++ N + A Q +LP
Sbjct: 327 KFKHTFENGVLIPKRSCYDFITKGSCERGSECRYLHSSDENASSAAADNEQ----QLPPG 382
Query: 185 TC-HYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPD 221
+C ++F KG C+ G +CR+ H L + F SP+
Sbjct: 383 SCFNFFKKGSCEKGDDCRFSHSLERKQQECWFCLASPN 420
>gi|302760911|ref|XP_002963878.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
gi|302813190|ref|XP_002988281.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300144013|gb|EFJ10700.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300169146|gb|EFJ35749.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
Length = 188
Score = 40.4 bits (93), Expect = 2.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 309 QHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
QH+V+ A N + + PG + + S TEDD YF +G + D
Sbjct: 81 QHSVVKA--------NGSAVAGPGGHASSKTKKIFVGGLGSNVTEDDFRKYFEQFGTITD 132
Query: 369 VRI----PCQQKRMFGFVTFASADTVKMILAK 396
V + Q+ R FGF+TF + + V +L K
Sbjct: 133 VVVMYDHATQRPRGFGFITFDTEEAVDNVLHK 164
>gi|213407206|ref|XP_002174374.1| U4/U6 snRNA-associated-splicing factor PRP24 [Schizosaccharomyces
japonicus yFS275]
gi|212002421|gb|EEB08081.1| U4/U6 snRNA-associated-splicing factor PRP24 [Schizosaccharomyces
japonicus yFS275]
Length = 999
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 326 NERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFV 382
N++S GPI R++Y+T + T+ DV +F+ YG V++VR+P + + FG+V
Sbjct: 737 NKQSREGPIYE-KRELYVT-NIDFACTKTDVEKFFSRYGSVENVRLPSRNPYRHAGFGYV 794
Query: 383 TFASADTVKMILAKGNPHFVCGARVL 408
++ D + L+ G+RVL
Sbjct: 795 VMSNKDEAERALSATGERL--GSRVL 818
>gi|356552729|ref|XP_003544715.1| PREDICTED: uncharacterized protein LOC100788515 [Glycine max]
Length = 478
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDA 318
Y+ KYG+V++A + + G+A G+ + A + R+I H V +
Sbjct: 25 YFGKYGEVIEA--VIMRDRTTGRARGFGFV-VFADPSAAERVIMDKHIIDGRTVEAKKAV 81
Query: 319 PKYLE---NRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI---- 371
P+ + NR S G G + ST TE D YF+ +G + DV +
Sbjct: 82 PRDDQQTINRQSGSIHGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTIADVVVMYDH 141
Query: 372 PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V +L K H + G V VK
Sbjct: 142 NTQRPRGFGFITYDSEEAVDRVLYK-TFHELNGKMVEVK 179
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFG--FVTFASADTVKMILAKGNPHFVCGARVLV 409
TED+V +F G V RIP Q R G FVTFA+++ + LA F G R +
Sbjct: 261 TEDEVKEHFAGCGEVTGARIPLQNGRSSGTAFVTFATSEAAEAALAMDGQDF--GGRWMK 318
Query: 410 KPYREKSKLVDRK 422
EK + D K
Sbjct: 319 IRTAEKKNMFDEK 331
>gi|281201992|gb|EFA76199.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 874
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE + ++F +G V D +I + RMFGF+ F+S K L V
Sbjct: 14 LTEKRLKDHFERFGTVTDCKIMKSRDGKSRMFGFIGFSSESAAKQAL------------V 61
Query: 408 LVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHSFSR-GCETSRFIRKQLLEEQE 466
L Y + SK++ K VD +S +S+ +S F + Q LE+Q+
Sbjct: 62 LNNTYLDTSKIIVEK--------------AVDSESVSRPWSKYSAGSSAFNKAQELEKQK 107
Query: 467 QAFELERRRLAELQLVRK 484
Q E ++++ AE +L K
Sbjct: 108 QLTEQQKKKDAEEKLKNK 125
>gi|73984981|ref|XP_533737.2| PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Canis
lupus familiaris]
Length = 512
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 182 PVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEI 241
P C Y+ KG+C +G+ CRY H S + G T P G + SP S L I
Sbjct: 129 PSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVG-TMPHGVSSPGFHSPHSASDLTASI 187
Query: 242 IE 243
++
Sbjct: 188 VK 189
>gi|357156001|ref|XP_003577309.1| PREDICTED: uncharacterized protein LOC100846541 [Brachypodium
distachyon]
Length = 463
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--------GQHAV 312
Y+EKYG+V++A + + G+A G+ + A + R+I H + AV
Sbjct: 25 YFEKYGEVVEA--VIMRDRATGRARGFGFI-VFADPAVAERVIMEKHMIDGRMVEAKKAV 81
Query: 313 ILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI- 371
+ + PGP T ++I++ A ST E D YF +G + DV +
Sbjct: 82 PRDDQQALSKSGGSTHGSPGPSRT--KKIFVGGLA-STVNEADFRTYFEQFGTITDVVVM 138
Query: 372 ---PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
Q+ R FGF+T+ S + V L K H + G V VK
Sbjct: 139 YDHNTQRPRGFGFITYDSEEAVDKALFK-TFHELNGKMVEVK 179
>gi|146260280|ref|NP_001041526.1| heterogeneous nuclear ribonucleoprotein A/B isoform 1 [Mus
musculus]
gi|89275690|gb|ABD66224.1| S1 protein C2 [Mus musculus]
gi|148701714|gb|EDL33661.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Mus
musculus]
Length = 332
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|74225210|dbj|BAE38291.1| unnamed protein product [Mus musculus]
Length = 325
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 164 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 222
Query: 408 LVK 410
+K
Sbjct: 223 EIK 225
>gi|356554539|ref|XP_003545603.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like
[Glycine max]
Length = 417
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 142 MEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKT----CHYFNK-GFCKH 196
+ ++ G G+ S+C Y A ++G G ELP + C YF K G CK+
Sbjct: 51 LYYLRTGACGYGSNCRYHHPAHISIGTHYGE-------ELPQRAGQPDCEYFLKTGMCKY 103
Query: 197 GSNCRYYH 204
GS C+Y+H
Sbjct: 104 GSTCKYHH 111
>gi|226472210|emb|CAX77141.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T +D+S+YF+ +G V D +I ++ R F FVTF D V K+ILA+ PH + ++
Sbjct: 116 TNEDLSDYFSQFGTVTDAQIVIAKETNTSRGFAFVTFDDTDAVDKVILAR--PHTIKDSK 173
Query: 407 VLVKPYREKSKLVDRKYQERMES 429
V+ K + R+ +M S
Sbjct: 174 ADVR------KALSREEMNKMRS 190
>gi|195591012|ref|XP_002085238.1| GD12423 [Drosophila simulans]
gi|194197247|gb|EDX10823.1| GD12423 [Drosophila simulans]
Length = 351
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 113 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 171
Query: 390 VKMI 393
V +
Sbjct: 172 VDKV 175
>gi|224061141|ref|XP_002300356.1| predicted protein [Populus trichocarpa]
gi|222847614|gb|EEE85161.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDA 318
Y+ KYG+V++A + + G+A G+ + A + R+I H V +
Sbjct: 25 YFSKYGEVVEA--VIMRDRVTGRARGFGFV-VFADPIVAERVIMEKHVVDGRTVEAKKAV 81
Query: 319 PK---YLENRNERS---DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP 372
P+ ++ +RN S PGP T ++I++ A ST TE+D YF +G + DV +
Sbjct: 82 PRDDQHILSRNTSSIHGSPGPGRT--KKIFVGGLA-STVTENDFKKYFEQFGIITDVVVM 138
Query: 373 CQQK----RMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
R FGF+T+ S + V +L K H + G V VK
Sbjct: 139 YDHNTLRPRGFGFITYDSEEAVDRVLHK-TFHELNGKMVEVK 179
>gi|110767982|ref|XP_624411.2| PREDICTED: hypothetical protein LOC552027 [Apis mellifera]
gi|380027797|ref|XP_003697603.1| PREDICTED: uncharacterized protein LOC100868777 [Apis florea]
Length = 378
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 262 YYEKYGK----VLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAED 317
++EK+G+ V+ S+ G YS ++ +N+ RPH ++
Sbjct: 36 HFEKWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA-----RPHKVDGRVVE-- 88
Query: 318 APKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--- 374
PK R E P T +++++ + EDD+ YF +YG ++ + I
Sbjct: 89 -PKRAVPRQEIGRPEAGAT-VKKLFVG-GLKDDHEEDDLKQYFQSYGTINSISIVTDKET 145
Query: 375 -QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
+KR FGFV F D V I + N H + G V VK K+++
Sbjct: 146 GKKRGFGFVEFDDYDPVDKICLQRN-HQIRGKHVDVKKALSKAEMA 190
>gi|414883901|tpg|DAA59915.1| TPA: hypothetical protein ZEAMMB73_814821 [Zea mays]
Length = 448
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 323 ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRM 378
N + PGP T R+I++ S+ TE D YF +G + DV + Q+ R
Sbjct: 93 SNGSSTGSPGPGRT--RKIFVG-GLPSSVTEADFRRYFEQFGIITDVVVMYDHNTQRPRG 149
Query: 379 FGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYV 438
FGF+T+ S D V L K + H + G V VK K E+ P+ SP V
Sbjct: 150 FGFITYDSEDAVDKALHK-SFHELNGKMVEVKRAVPK---------EQSPGPVVRSPVGV 199
Query: 439 DMD---SELHSFSRG 450
+ + +HSF G
Sbjct: 200 GQNYATNRVHSFLNG 214
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
+ D+S F +GPV V IP R F FV F + + LA GN V G +V
Sbjct: 302 DSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKVQY 361
Query: 410 KPYREKSKL 418
YR K +L
Sbjct: 362 SAYRTKEEL 370
>gi|358334791|dbj|GAA32408.2| heterogeneous nuclear ribonucleoprotein A1/A3 [Clonorchis sinensis]
Length = 340
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T+D++ +YF+ YG + D I ++ R FGFVTF D V K IL K PH + +R
Sbjct: 120 TQDELRDYFSKYGNIVDCEIVTWKETGESRGFGFVTFDDYDPVDKAILYK--PHHIGSSR 177
Query: 407 VLVK 410
VK
Sbjct: 178 ADVK 181
>gi|296485782|tpg|DAA27897.1| TPA: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
taurus]
Length = 360
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 262 YYEKYGKVLQA---GGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDA 318
YY+++G++ G ++ R G+ + + + RPH ++
Sbjct: 48 YYQQWGELTDCVVIRGLASQKSR----GFGFVTFSSVAEVDAAMAARPHSIDGRVVD--- 100
Query: 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQ 374
PK +R + G +V +++++ E T E + YF YG +D + I
Sbjct: 101 PKRAVSREKSEKQGSLVN-VKKLFVGGIKEDT-EEHHLREYFEKYGKIDAIEIITDRQSG 158
Query: 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESP 430
+KR FGFVTF D V I+ + H + G R V K + R+ + ++ P
Sbjct: 159 KKRGFGFVTFDDYDPVDKIMLQ-KYHAINGHRAEV------GKALSRQEMKEIQGP 207
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
T TEDD YF +G + DV + Q+ R FGF+T+ S D V +L
Sbjct: 111 TVTEDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVL 159
>gi|1362732|pir||S56750 single stranded D box binding factor 2 - chicken
Length = 353
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 186 TEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKC 244
Query: 408 LVK 410
+K
Sbjct: 245 EIK 247
>gi|405977312|gb|EKC41770.1| Heterogeneous nuclear ribonucleoprotein 27C [Crassostrea gigas]
Length = 569
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
+D + N+F+ YG V D + Q+ R FGFVTF A V +L+ PH + G +V
Sbjct: 54 QDSLLNFFSQYGEVIDCVVMKNQQTGKSRGFGFVTFNDAQCVDTVLSAA-PHTIDGRQVD 112
Query: 409 VKPYREKS 416
KP K+
Sbjct: 113 AKPCNPKA 120
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFV 402
ED + N+F YG V DV I Q+ R FGF+TF S D V + A+ HF+
Sbjct: 159 EDFLRNFFGKYGKVLDVNIMIDQQNKKSRGFGFLTFESEDAVDQVCAE---HFI 209
>gi|30682553|ref|NP_683559.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11994764|dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana]
gi|19347908|gb|AAL85976.1| unknown protein [Arabidopsis thaliana]
gi|21689785|gb|AAM67536.1| unknown protein [Arabidopsis thaliana]
gi|62320244|dbj|BAD94504.1| hypothetical protein [Arabidopsis thaliana]
gi|332641794|gb|AEE75315.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 358
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
ST TED++ ++F YG V + ++ + R FGFV F S + V +L+KGN +
Sbjct: 118 STVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMAD 177
Query: 405 ARVLVKPYREKSKL 418
+V +K K L
Sbjct: 178 TQVEIKKAEPKKSL 191
>gi|313233627|emb|CBY09798.1| unnamed protein product [Oikopleura dioica]
Length = 367
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMIL 394
+F+E+++ YF+ YG V + + ++ R FGFVTFAS + L
Sbjct: 134 SFSEEELGEYFSQYGTVVESLVKTKEGRSFGFVTFASIEEANAAL 178
>gi|270011960|gb|EFA08408.1| hypothetical protein TcasGA2_TC006055 [Tribolium castaneum]
Length = 479
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+E +G+VL A + + + G++ G+ + A ++ +R++ + H +
Sbjct: 127 YFETFGEVLMA--QVKKDPKTGQSKGFGFIRF-ASYESQMRVLAQRHMIDG--------R 175
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
+ + + S G I ++++ E T DD+ YF YG V DV IP + R F
Sbjct: 176 WCDVKVPNSKEGLIQQVPCKVFIGRCTEE-LTADDLREYFGKYGEVTDVFIP-KPFRAFS 233
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
FVTF + + + G H + G V V KS+
Sbjct: 234 FVTFLDPEVAQSLC--GEDHIIKGVSVHVSNAAPKSE 268
>gi|171846711|gb|AAI61598.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 280
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 311 AVILAEDAP---KYLENRNERSDPGPIVTGSRQIYLTF-PAESTFT--------EDDVSN 358
IL +DA K LE + R D G ++ + + + P + F ED +
Sbjct: 63 GFILFKDAASVDKVLEQKEHRLD-GRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDKIRE 121
Query: 359 YFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
YF T+G ++ + +P ++R F F+TF + VK IL K H V G++ +K
Sbjct: 122 YFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK-KFHNVSGSKFEIK 176
>gi|12851175|dbj|BAB28963.1| unnamed protein product [Mus musculus]
gi|148701715|gb|EDL33662.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Mus
musculus]
Length = 276
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|389582520|dbj|GAB65258.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 317
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 262 YYEKYG---KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRP--HGQHAVILAE 316
Y+EKYG V+ A + T+ R G++ + +++ LID +G+ + E
Sbjct: 134 YFEKYGPVQNVVIAQDHETKRNR----GFAFVTMSSQINKDKILIDTHELNGKRVDVREE 189
Query: 317 D--APKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI--- 371
+ P ++ + I G Y +T+D + +YF+ +G +D V+I
Sbjct: 190 NNTIPSDIQRK--------IFVGGLNYY--------WTKDTLESYFSAFGEIDVVQIVLD 233
Query: 372 PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR-EKSKL-VDRKYQERMES 429
+ R FGFV FA+ +V +L K H + V V+ +K K+ + R++ +R ++
Sbjct: 234 SSGRSRCFGFVVFANESSVAKVL-KHRRHKIYDKMVEVRKAEPKKPKMAMKRQHSKRFQN 292
Query: 430 PMYFSPQY 437
F P Y
Sbjct: 293 MPDFYPNY 300
>gi|357459939|ref|XP_003600251.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
gi|355489299|gb|AES70502.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
Length = 481
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
+ PGP T ++I++ ST TE D YF+ +G + DV + Q+ R FGF+T
Sbjct: 97 QGSPGPGRT--KKIFVG-GLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
Query: 384 FASADTVKMILAKGNPHFVCGARVLVK 410
+ S + V +L K H + G V VK
Sbjct: 154 YDSEEAVDRVLYK-TFHELNGKMVEVK 179
>gi|349804307|gb|AEQ17626.1| putative heterogeneous nuclear ribonucleoprotein A3 [Hymenochirus
curtipes]
Length = 249
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++E++GK+ + + Q G+ + + RPH ++ PK
Sbjct: 33 HFEQWGKLTDCV-VMRDPQTKRSRGFGFVTYSCVEEVDAAMTARPHKVDGRVVE---PKR 88
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + + PG +T ++I++ E T E + +YF YG ++ + + +KR
Sbjct: 89 AVSREDSARPGAHLT-VKKIFVGGIKEDT-EEYHLRDYFEGYGKIETIEVMEDRQSGKKR 146
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 147 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 186
>gi|297798166|ref|XP_002866967.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312803|gb|EFH43226.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 380
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ +E D ++F YG + D+ +P +Q R GF+TF+SAD+V+ ++ + H + G
Sbjct: 100 SSVSESDFRSHFERYGEITDLYMPKDHNSKQHRGIGFITFSSADSVEDLME--DTHDLGG 157
Query: 405 ARVLV 409
V V
Sbjct: 158 TTVAV 162
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVT 383
R +P G++ P E++ DD+ YF +G + D IP KR FGFVT
Sbjct: 231 RGEPTTRGIGNKIFVGRLPQEASV--DDLREYFGRFGRIQDAYIPKDPKRSGHRGFGFVT 288
Query: 384 FASADTVKMILAKGNPHFVCGARVLV 409
FA + + H +CG V +
Sbjct: 289 FAENGVADCVARRS--HEICGQEVAI 312
>gi|293334069|ref|NP_001168848.1| uncharacterized protein LOC100382653 [Zea mays]
gi|392351175|ref|XP_003750865.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
2 [Rattus norvegicus]
gi|6562845|emb|CAB62553.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|149052496|gb|EDM04313.1| rCG34663, isoform CRA_a [Rattus norvegicus]
gi|223973327|gb|ACN30851.1| unknown [Zea mays]
Length = 332
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|242033307|ref|XP_002464048.1| hypothetical protein SORBIDRAFT_01g011290 [Sorghum bicolor]
gi|241917902|gb|EER91046.1| hypothetical protein SORBIDRAFT_01g011290 [Sorghum bicolor]
Length = 301
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 181 LPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFG 216
L K C Y+ +G+CK+GS CR+ HG + + T + G
Sbjct: 162 LGWKPCLYYARGYCKNGSACRFVHGGLPDDATTLAG 197
>gi|91087839|ref|XP_967837.1| PREDICTED: similar to TBPH CG10327-PA [Tribolium castaneum]
Length = 450
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPK 320
Y+E +G+VL A + + + G++ G+ + A ++ +R++ + H +
Sbjct: 127 YFETFGEVLMA--QVKKDPKTGQSKGFGFIRF-ASYESQMRVLAQRHMIDG--------R 175
Query: 321 YLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFG 380
+ + + S G I ++++ E T DD+ YF YG V DV IP + R F
Sbjct: 176 WCDVKVPNSKEGLIQQVPCKVFIGRCTEE-LTADDLREYFGKYGEVTDVFIP-KPFRAFS 233
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
FVTF + + + G H + G V V KS+
Sbjct: 234 FVTFLDPEVAQSLC--GEDHIIKGVSVHVSNAAPKSE 268
>gi|27695334|gb|AAH43069.1| Hnrpab protein [Mus musculus]
Length = 311
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|15220810|ref|NP_173208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191496|gb|AEE29617.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 369
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
ED++ NYF YG + + +I + R FGFVTF + D+V + + G H + +V
Sbjct: 170 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 229
Query: 409 VKPYREKSKLVDRKYQERMESPMY 432
+K K D ++ S Y
Sbjct: 230 IKRAEPKRTGRDNSFRSYGASGKY 253
>gi|4006877|emb|CAB16795.1| RNA-binding like protein [Arabidopsis thaliana]
gi|7270645|emb|CAB80362.1| RNA-binding like protein [Arabidopsis thaliana]
Length = 306
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM----FGFVT 383
R +P G++ P E++ DD+ +YF +G + D IP KR FGFVT
Sbjct: 174 RGEPTTRGIGNKIFVGRLPQEASV--DDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 231
Query: 384 FASADTVKMILAKGNPHFVCGARVLV 409
FA + + H +CG V +
Sbjct: 232 FAENGVADRVARRS--HEICGQEVAI 255
>gi|328783809|ref|XP_392590.4| PREDICTED: TAR DNA-binding protein 43-like [Apis mellifera]
gi|340729558|ref|XP_003403067.1| PREDICTED: TAR DNA-binding protein 43-like [Bombus terrestris]
gi|350411720|ref|XP_003489432.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Bombus
impatiens]
gi|350411723|ref|XP_003489433.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Bombus
impatiens]
gi|380018789|ref|XP_003693304.1| PREDICTED: TAR DNA-binding protein 43-like [Apis florea]
gi|383859208|ref|XP_003705088.1| PREDICTED: TAR DNA-binding protein 43-like [Megachile rotundata]
Length = 467
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
T DD+ +YF+ YG V DV IP + R F FVTF + + + G H + G V V
Sbjct: 203 LTADDLRDYFSKYGEVTDVFIP-KPFRAFSFVTFLDPEVAQSLC--GEDHIIKGVSVHVS 259
Query: 411 PYREKSK 417
KS+
Sbjct: 260 NAAPKSE 266
>gi|346469143|gb|AEO34416.1| hypothetical protein [Amblyomma maculatum]
Length = 314
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ---KRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF+ +G V D + C + R FGFVTF V +LA G PH + G V
Sbjct: 21 TQESLLNYFSRFGEVVDCVVMCNETGRSRGFGFVTFRDPSCVATVLA-GGPHQLDGRTV 78
>gi|3377279|dbj|BAA32032.1| AlF-C1 [Rattus norvegicus]
Length = 331
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 170 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 228
Query: 408 LVK 410
+K
Sbjct: 229 EIK 231
>gi|140971918|ref|NP_112620.2| heterogeneous nuclear ribonucleoprotein A/B [Rattus norvegicus]
gi|392351173|ref|XP_003750864.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
1 [Rattus norvegicus]
gi|6911221|gb|AAF31437.1|AF216753_1 CArG-binding factor A [Rattus norvegicus]
gi|6562847|emb|CAB62554.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|44890256|gb|AAH66664.1| Hnrpab protein [Rattus norvegicus]
gi|149052497|gb|EDM04314.1| rCG34663, isoform CRA_b [Rattus norvegicus]
Length = 285
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|6754222|ref|NP_034578.1| heterogeneous nuclear ribonucleoprotein A/B isoform 2 [Mus
musculus]
gi|729000|sp|Q99020.1|ROAA_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=CArG-binding factor-A;
Short=CBF-A
gi|220363|dbj|BAA14181.1| CArG-binding factor-A [Mus musculus]
gi|840648|gb|AAA92146.1| CArG box-binding factor [Mus musculus]
gi|12850708|dbj|BAB28821.1| unnamed protein product [Mus musculus]
gi|89275692|gb|ABD66225.1| S1 protein D2 [Mus musculus]
gi|148701716|gb|EDL33663.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_c [Mus
musculus]
Length = 285
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|328780076|ref|XP_003249751.1| PREDICTED: CUGBP Elav-like family member 2-like [Apis mellifera]
Length = 628
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 25/136 (18%)
Query: 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD---VRIPCQQ 375
P ENRNER ++++ ++ FTE+DV N F+ YG +++ +R +
Sbjct: 187 PADSENRNER-----------KLFVGMLSKK-FTENDVRNMFSVYGTIEECSVLRDSTGK 234
Query: 376 KRMFGFVTFASAD-TVKMILAKGNPHFV--CGARVLVKPYREKSKLVDRKYQERMESPMY 432
+ FVTFAS + I A + + C + ++VK + + K D+K +++++ ++
Sbjct: 235 SKACAFVTFASKQYAINAIKALHHSQTMEGCSSPLVVK-FADTQKEKDQKRMQQLQTNLW 293
Query: 433 ------FSPQYVDMDS 442
+P Y+ D+
Sbjct: 294 NIAGVNMAPHYLTNDT 309
>gi|26345118|dbj|BAC36208.1| unnamed protein product [Mus musculus]
Length = 285
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>gi|357119407|ref|XP_003561433.1| PREDICTED: DAZ-associated protein 1-like [Brachypodium distachyon]
Length = 376
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED+ YF +G V DV + + R FGFVTF S + V+ ++ K + H + G RV
Sbjct: 160 TEDEFRAYFEAFGTVTDVVVIYDSLTNRSRGFGFVTFDSEEAVRKVMGK-SFHDLKGTRV 218
Query: 408 LVK 410
K
Sbjct: 219 EAK 221
>gi|341889790|gb|EGT45725.1| hypothetical protein CAEBREN_10423 [Caenorhabditis brenneri]
Length = 311
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT ++++++ +T T +D+ YF TYG V+D + Q+ R FGFVTF S D
Sbjct: 118 LVTKTKKVFIG-GLSATSTLEDMKQYFETYGKVEDAMLMYDKATQRHRGFGFVTFDS-DE 175
Query: 390 VKMILAKGNPHFVCGARVLVKPYREKSKLV 419
V + + + H + G V K + K ++
Sbjct: 176 VADKVCEIHFHEINGKMVECKKAQPKEVML 205
>gi|56758132|gb|AAW27206.1| SJCHGC06052 protein [Schistosoma japonicum]
gi|226472196|emb|CAX77134.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472198|emb|CAX77135.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472200|emb|CAX77136.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472202|emb|CAX77137.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472206|emb|CAX77139.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472208|emb|CAX77140.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472212|emb|CAX77142.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472214|emb|CAX77143.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472216|emb|CAX77144.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472220|emb|CAX77146.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472222|emb|CAX77147.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226473414|emb|CAX71392.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T +D+S+YF+ +G V D +I R F FVTF D V K+ILA+ PH + ++
Sbjct: 116 TNEDLSDYFSQFGTVTDAQIVIAKDTNTSRGFAFVTFDDTDAVDKVILAR--PHTIKDSK 173
Query: 407 VLVKPYREKSKLVDRKYQERMES 429
V+ K + R+ +M S
Sbjct: 174 ADVR------KALSREEMNKMRS 190
>gi|68074213|ref|XP_679021.1| nucleic acid binding factor [Plasmodium berghei strain ANKA]
gi|56499660|emb|CAH99922.1| nucleic acid binding factor, putative [Plasmodium berghei]
Length = 491
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIP---CQQK-RMFGFVTFASADTVKMILAKGN-PHFVC 403
S T + + NYF +YG + D+ +P C K R FVTF ++ VK IL+ N H +
Sbjct: 412 SVTTIETLRNYFESYGEIIDIYMPNDICTNKPRGIAFVTFLDSECVKKILSNKNYKHIID 471
Query: 404 GARVLV 409
G V +
Sbjct: 472 GKEVNI 477
>gi|147819907|emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]
Length = 460
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKT----CHYFNK-GFC 194
D + ++ G G+ S+C ++ A S GA+ ELP + C YF K G C
Sbjct: 31 DCIYYLRTGLCGYGSNCRFNHPAYSEQGAQ-------YRGELPERVGQPDCGYFLKTGTC 83
Query: 195 KHGSNCRYYH 204
K+GS C+Y+H
Sbjct: 84 KYGSTCKYHH 93
>gi|297829856|ref|XP_002882810.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297328650|gb|EFH59069.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 231
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGN 398
ST TED++ ++F+ YG V + ++ + R FGFV F S + V +L+KGN
Sbjct: 118 STVTEDELKDFFSKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>gi|255717440|ref|XP_002555001.1| KLTH0F18766p [Lachancea thermotolerans]
gi|238936384|emb|CAR24564.1| KLTH0F18766p [Lachancea thermotolerans CBS 6340]
Length = 588
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
TED++ +YF+ YG V D++I + R FGF+TFA A +V ++
Sbjct: 220 TEDNLKDYFSKYGQVTDLKIMRDNATGRSRGFGFLTFAEASSVDEVV 266
>gi|147786960|emb|CAN60075.1| hypothetical protein VITISV_017592 [Vitis vinifera]
Length = 498
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 33 EQEMIHLAMSPDVVIQEVVYKAKAELQQLAMKSASSPISPSMNSP--VNEVSFQFNPF-- 88
E+ I LA +PD VIQ ++ +AK EL S+PISP +P V+++ Q PF
Sbjct: 54 ERGRIRLAFNPDNVIQYLINEAKTELGLSLKLVVSNPISPPHVNPSLVSDLPLQLTPFSP 113
Query: 89 -SSRP-PVSPAG 98
S+ P P SP G
Sbjct: 114 ASAWPFPSSPPG 125
>gi|226472204|emb|CAX77138.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T +D+S+YF+ +G V D +I R F FVTF D V K+ILA+ PH + ++
Sbjct: 116 TNEDLSDYFSQFGTVTDAQIVIAKDTNTSRGFAFVTFDDTDAVDKVILAR--PHTIKDSK 173
Query: 407 VLVKPYREKSKLVDRKYQERMES 429
V+ K + R+ +M S
Sbjct: 174 ADVR------KALSREEMNKMRS 190
>gi|45384514|ref|NP_990659.1| heterogeneous nuclear ribonucleoprotein A/B [Gallus gallus]
gi|515838|emb|CAA56586.1| single stranded D box binding factor [Gallus gallus]
Length = 302
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 186 TEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKC 244
Query: 408 LVK 410
+K
Sbjct: 245 EIK 247
>gi|226472218|emb|CAX77145.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 307
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T +D+S+YF+ +G V D +I R F FVTF D V K+ILA+ PH + ++
Sbjct: 116 TNEDLSDYFSQFGTVTDAQIVIAKDTNTSRGFAFVTFDDTDAVDKVILAR--PHTIKDSK 173
Query: 407 VLVKPYREKSKLVDRKYQERMES 429
V+ K + R+ +M S
Sbjct: 174 ADVR------KALSREEMNKMRS 190
>gi|426230606|ref|XP_004009357.1| PREDICTED: uncharacterized protein LOC101121854 [Ovis aries]
Length = 477
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQ-KRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + NY+ +G + D +R P Q R FGFVTF+S V +A PH + G RV
Sbjct: 33 TEETLWNYYQQWGYLTDCVVIRDPASQTSRRFGFVTFSSVAEVDAAMA-ARPHSIDGKRV 91
>gi|392591591|gb|EIW80918.1| hypothetical protein CONPUDRAFT_103939 [Coniophora puteana
RWD-64-598 SS2]
Length = 1056
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 323 ENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMF 379
E + ER+D +++Y+ ++ T T++D+ F TYG V+DVR+ Q + F
Sbjct: 794 ERKKERTDAD---ANEKEVYVAGLSKYT-TKEDLKGVFKTYGTVNDVRLVTDKNGQSKGF 849
Query: 380 GFVTFASADTVKMILAKGNPHF------VCGARVLVKPYREKSK 417
FV F S + + L+ N V A VKP + SK
Sbjct: 850 AFVEFESETSAQAALSANNYELRSRRIAVTLADSRVKPRYQDSK 893
>gi|444729715|gb|ELW70122.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Tupaia chinensis]
Length = 323
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RP ++ PK
Sbjct: 50 YYEQWGKLTDCVVMRVPASKRSR-GFGFVTFSSMAEADAAMTTRPQSIDGRVIE---PKC 105
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E PG VT +++++ E T E + +YF Y +D +I +KR
Sbjct: 106 AVAREESGKPGAHVT-VKKLFIGGIEEDT-EEHHLRDYFEEYRKIDTTKIITDRQSGKKR 163
Query: 378 MFGFVTFASADTVKMIL 394
F FVTF D V I+
Sbjct: 164 SFDFVTFDDHDPVDKIV 180
>gi|380013066|ref|XP_003690591.1| PREDICTED: CUGBP Elav-like family member 2-like [Apis florea]
Length = 582
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 25/136 (18%)
Query: 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD---VRIPCQQ 375
P ENRNER ++++ ++ FTE+DV N F+ YG +++ +R +
Sbjct: 164 PADSENRNER-----------KLFVGMLSKK-FTENDVRNMFSVYGTIEECSVLRDSTGK 211
Query: 376 KRMFGFVTFASAD-TVKMILAKGNPHFV--CGARVLVKPYREKSKLVDRKYQERMESPMY 432
+ FVTFAS + I A + + C + ++VK + + K D+K +++++ ++
Sbjct: 212 SKACAFVTFASKQYAINAIKALHHSQTMEGCSSPLVVK-FADTQKEKDQKRMQQLQTNLW 270
Query: 433 ------FSPQYVDMDS 442
+P Y+ D+
Sbjct: 271 NIAGVNMAPHYLTNDT 286
>gi|225447159|ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containing protein 12 [Vitis
vinifera]
gi|297739220|emb|CBI28871.3| unnamed protein product [Vitis vinifera]
Length = 450
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKT----CHYFNK-GFC 194
D + ++ G G+ S+C ++ A S GA+ ELP + C YF K G C
Sbjct: 52 DCIYYLRTGLCGYGSNCRFNHPAYSEQGAQ-------YRGELPERVGQPDCGYFLKTGTC 104
Query: 195 KHGSNCRYYH 204
K+GS C+Y+H
Sbjct: 105 KYGSTCKYHH 114
>gi|242043256|ref|XP_002459499.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
gi|241922876|gb|EER96020.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
Length = 455
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDRPHGQHAVILA 315
Y+ ++G+V +A + + G+A G+ + R+ +ID + +
Sbjct: 32 YFGRFGEVTEA--VIMRDRSTGRARGFGFVVFADPAVAERVTMDKHMIDGRMVEAKKAVP 89
Query: 316 EDAPKYLENRNERS--DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
D + N S PGP T R+I++ S TE D YF +G + DV +
Sbjct: 90 RDDHSIVSKSNASSIGSPGPGRT--RKIFVG-GLPSNVTEADFRRYFEQFGVITDVVVMY 146
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
Q+ R FGF+T+ S D V L K + H + G V VK K E+
Sbjct: 147 DHNTQRPRGFGFITYDSEDAVDKALHK-SFHELNGKMVEVKRAVPK---------EQSPG 196
Query: 430 PMYFSPQYVDMD---SELHSFSRG 450
P+ SP V + + +HSF G
Sbjct: 197 PVVRSPVGVGQNYAMNRVHSFLNG 220
>gi|367015290|ref|XP_003682144.1| hypothetical protein TDEL_0F01220 [Torulaspora delbrueckii]
gi|359749806|emb|CCE92933.1| hypothetical protein TDEL_0F01220 [Torulaspora delbrueckii]
Length = 212
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 17/93 (18%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCG-- 404
F E ++S YF+ +G + +VR+ +K R +GF+ FA+ D K+ N + + G
Sbjct: 94 FHERELSKYFSQFGDLKEVRLARNKKNGNSRHYGFIEFANKDDAKVAHETMNNYLIMGHL 153
Query: 405 --ARVLVKPYREKSKLVDR--KYQER--MESPM 431
RVL K + +D+ KY++R E+P+
Sbjct: 154 LQVRVLPKGAK-----IDKLYKYKKRAFQEAPV 181
>gi|291387921|ref|XP_002710458.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Oryctolagus
cuniculus]
Length = 306
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H + G++
Sbjct: 140 TEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEDPVKKVLEK-KFHTISGSKC 198
Query: 408 LVK 410
+K
Sbjct: 199 EIK 201
>gi|67536962|ref|XP_662255.1| hypothetical protein AN4651.2 [Aspergillus nidulans FGSC A4]
gi|40741263|gb|EAA60453.1| hypothetical protein AN4651.2 [Aspergillus nidulans FGSC A4]
Length = 1639
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 307 HGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+G H V+ D P ++RN GPI G R+I+++ S +EDD+ F+ +G V
Sbjct: 970 NGLHLVVKISD-PSRKQDRN-----GPIYEG-REIHVSNVNWSA-SEDDLKELFSRFGTV 1021
Query: 367 DDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHF 401
+ VR+P + + FG+V F+S + LA F
Sbjct: 1022 ELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQEF 1059
>gi|259482511|tpe|CBF77063.1| TPA: pre-mRNA splicing factor (Prp24), putative (AFU_orthologue;
AFUA_2G01820) [Aspergillus nidulans FGSC A4]
Length = 1290
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 307 HGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+G H V+ D P ++RN GPI G R+I+++ S +EDD+ F+ +G V
Sbjct: 971 NGLHLVVKISD-PSRKQDRN-----GPIYEG-REIHVSNVNWSA-SEDDLKELFSRFGTV 1022
Query: 367 DDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHF 401
+ VR+P + + FG+V F+S + LA F
Sbjct: 1023 ELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQEF 1060
>gi|383857431|ref|XP_003704208.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like
[Megachile rotundata]
Length = 443
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 313 ILAEDAPKYLENR-------NERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGP 365
++ ++ P L+ R N R+ P +G S TE D+ +FN YG
Sbjct: 69 LVLQNGPHQLDGRTIDPKPCNPRTQQKPKRSGGFPKVFLGGLPSNVTETDLRTFFNRYGK 128
Query: 366 VDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFV--CGARVLVK---PYREKS 416
V +V I Q+ R FGF++F D V +A+ HFV G +V +K P S
Sbjct: 129 VMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAE---HFVNLNGKQVEIKRAEPRDSSS 185
Query: 417 KLVD 420
K+ D
Sbjct: 186 KMND 189
>gi|386771324|ref|NP_001246813.1| RNA-binding protein 6, isoform F [Drosophila melanogaster]
gi|383291984|gb|AFH04484.1| RNA-binding protein 6, isoform F [Drosophila melanogaster]
Length = 225
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 1 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 59
Query: 390 VKMI 393
V +
Sbjct: 60 VDKV 63
>gi|242047760|ref|XP_002461626.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
gi|241925003|gb|EER98147.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
Length = 453
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLT-----KLLARLKNSVRLIDRPHGQHAVILA 315
Y+ ++G+V +A + + G+A G+ + R+ +ID + +
Sbjct: 30 YFGRFGEVTEA--VIMRDRSTGRARGFGFVVFADPAVAERVTMDKHMIDGRMVEAKKAVP 87
Query: 316 EDAPKYLENRNERS--DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI-- 371
D + N S PGP T R+I++ S TE D YF +G + DV +
Sbjct: 88 RDDHSIVSKSNASSIGSPGPGRT--RKIFVG-GLPSNVTEADFRRYFEQFGVITDVVVMY 144
Query: 372 --PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMES 429
Q+ R FGF+T+ S D V L K + H + G V VK K E+
Sbjct: 145 DHNTQRPRGFGFITYDSEDAVDKALHK-SFHELNGKMVEVKRAVPK---------EQSPG 194
Query: 430 PMYFSPQYVDMD---SELHSFSRG 450
P+ SP V + + +HSF G
Sbjct: 195 PVVRSPVGVGQNYAMNRVHSFLNG 218
>gi|26350925|dbj|BAC39099.1| unnamed protein product [Mus musculus]
Length = 301
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 83 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 141
Query: 390 VKMI 393
V+ +
Sbjct: 142 VEKV 145
>gi|308510723|ref|XP_003117544.1| hypothetical protein CRE_00749 [Caenorhabditis remanei]
gi|308238190|gb|EFO82142.1| hypothetical protein CRE_00749 [Caenorhabditis remanei]
Length = 336
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF+ +GPV D +R P + R FGFVTFAS + + + PH + G V
Sbjct: 82 TDEQLGNYFSQWGPVVDAIVIRDPTTKHSRGFGFVTFASIFSAESAM-NDRPHKLGGKTV 140
Query: 408 LVKPYREKSKLVDRKYQERMESPMYF 433
+ + + R+ M P +F
Sbjct: 141 ------DSKRAIPREQMSSMIPPPFF 160
>gi|317419221|emb|CBN81258.1| U6 snRNA-specific terminal uridylyltransferase 1 [Dicentrarchus
labrax]
Length = 801
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
++ DV YF YGPV DV I + K ++ V F D V+ L+ H + G ++ VK
Sbjct: 65 ISQTDVVEYFQQYGPVSDV-IMDKDKGVYAIVQFNETDGVQATLSCVE-HQMKGLKLRVK 122
Query: 411 PYREKS-KLVDRK---YQERMESPMYFSPQYVDM---DSELHSFSRGCE------TSRFI 457
P +K KL+ +K +Q + PQ + D+++ C+ +R +
Sbjct: 123 PREKKEFKLIPKKRNDFQNLQQILDRLKPQLCQLLSVDAQMQYIVERCQLGENEKKARGL 182
Query: 458 RKQLLEE 464
QLL+E
Sbjct: 183 LVQLLQE 189
>gi|313232764|emb|CBY19435.1| unnamed protein product [Oikopleura dioica]
Length = 489
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVC 403
+ T T + + YF+ YGP+ ++ + R FGF+ F S +V ++ K PH +
Sbjct: 184 DRTTTTERLQEYFSAYGPIKYCQVKVDPESGESRGFGFIVFESTHSVDNVI-KNLPHSID 242
Query: 404 GARVLVKPYREKSKLVDRK 422
G RV K K+K D K
Sbjct: 243 GKRVDAKRQHLKTKNGDDK 261
>gi|221331233|ref|NP_001137961.1| RNA-binding protein 6, isoform D [Drosophila melanogaster]
gi|220902621|gb|ACL83316.1| RNA-binding protein 6, isoform D [Drosophila melanogaster]
Length = 162
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 1 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 59
Query: 390 VKMI 393
V +
Sbjct: 60 VDKV 63
>gi|198437172|ref|XP_002122781.1| PREDICTED: similar to musashi 2 [Ciona intestinalis]
Length = 386
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 331 PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFAS 386
P +VT +++I++ + +T DD+ NYF TYG V+D + + R FGFVTF +
Sbjct: 74 PAQMVTRTKKIFVGGLSANTVV-DDLKNYFGTYGKVEDAMLMFDKQTNRHRGFGFVTFDN 132
Query: 387 ADTVKMI 393
+ V+ +
Sbjct: 133 EEPVEKV 139
>gi|356535448|ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGA 405
T TE+ YF +YG V DV + Q R FGF++F + D V +L K + H + G
Sbjct: 122 TLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHK-SFHDLNGK 180
Query: 406 RVLVK 410
+V VK
Sbjct: 181 QVEVK 185
>gi|212276326|ref|NP_001130962.1| Ribonucleoprotein like protein isoform 1 [Zea mays]
gi|194690564|gb|ACF79366.1| unknown [Zea mays]
gi|195616124|gb|ACG29892.1| ribonucleoprotein like protein [Zea mays]
gi|224030751|gb|ACN34451.1| unknown [Zea mays]
gi|414592149|tpg|DAA42720.1| TPA: Ribonucleoprotein like protein isoform 1 [Zea mays]
gi|414592150|tpg|DAA42721.1| TPA: Ribonucleoprotein like protein isoform 2 [Zea mays]
Length = 370
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 326 NERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFG 380
N +D G V GS+++++ + T TE++ YF T+G V DV + + R FG
Sbjct: 123 NGTADSGDNVNYGSKKVFVGGLQDDT-TEEEFRAYFETFGTVTDVAVIYDSATNRSRGFG 181
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVK 410
FVTF S + V ++ + + H + G +V K
Sbjct: 182 FVTFDSEEAVGKVMRQ-SFHDLNGTKVEAK 210
>gi|308490851|ref|XP_003107617.1| CRE-MSI-1 protein [Caenorhabditis remanei]
gi|308250486|gb|EFO94438.1| CRE-MSI-1 protein [Caenorhabditis remanei]
Length = 335
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT ++++++ +T T +D+ YF TYG V+D + Q+ R FGFVTF S D
Sbjct: 125 LVTKTKKVFIG-GLSATSTLEDLKQYFETYGKVEDAMLMYDKATQRHRGFGFVTFDS-DE 182
Query: 390 VKMILAKGNPHFVCGARVLVKPYREKSKLV 419
V + + + H + G V K + K ++
Sbjct: 183 VADKVCEIHFHEINGKMVECKKAQPKEVML 212
>gi|449267179|gb|EMC78145.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Columba
livia]
Length = 263
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 96 TEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKC 154
Query: 408 LVK 410
+K
Sbjct: 155 EIK 157
>gi|8778468|gb|AAF79476.1|AC022492_20 F1L3.34 [Arabidopsis thaliana]
Length = 392
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 353 EDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
ED++ NYF YG + + +I + R FGFVTF + D+V + + G H + +V
Sbjct: 193 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 252
Query: 409 VKPYREKSKLVDRKYQERMESPMY 432
+K K D ++ S Y
Sbjct: 253 IKRAEPKRTGRDNSFRSYGASGKY 276
>gi|241744067|ref|XP_002414227.1| tar DNA-binding protein, putative [Ixodes scapularis]
gi|215508081|gb|EEC17535.1| tar DNA-binding protein, putative [Ixodes scapularis]
Length = 204
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 320 KYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMF 379
++ + + S G SR++++ E T DD+ +YF+ +G V DV IP + R F
Sbjct: 60 RWCDVKIPNSKDGQASELSRKVFVGRCTED-LTSDDLRDYFSKFGEVTDVFIP-KPFRAF 117
Query: 380 GFVTFASADTVKMILAKGNPHFVCGARV 407
FVTF D + + G H + G +
Sbjct: 118 AFVTFVDPDVAQSLC--GEDHIIRGTSI 143
>gi|66911597|gb|AAH97855.1| LOC496375 protein [Xenopus laevis]
Length = 286
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAK 396
ED + YF T+G V+ + +P K R F F+TF D VK I+ K
Sbjct: 127 EDKIREYFGTFGEVEAIELPMDNKTNKRRGFCFITFKEEDPVKNIMEK 174
>gi|17554332|ref|NP_497799.1| Protein MSI-1 [Caenorhabditis elegans]
gi|10047307|dbj|BAB13470.1| neural RNA-binding protein MSI-1 [Caenorhabditis elegans]
gi|18376536|emb|CAA84667.2| Protein MSI-1 [Caenorhabditis elegans]
Length = 320
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT ++++++ +T T +D+ YF TYG V+D + Q+ R FGFVTF S D
Sbjct: 129 LVTKTKKVFIG-GLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS-DE 186
Query: 390 VKMILAKGNPHFVCGARVLVKPYREKSKLV 419
V + + + H + G V K + K ++
Sbjct: 187 VADKVCEIHFHEINGKMVECKKAQPKEVML 216
>gi|321461997|gb|EFX73024.1| hypothetical protein DAPPUDRAFT_32116 [Daphnia pulex]
Length = 185
Score = 39.7 bits (91), Expect = 4.8, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+ + + YF+ +G V +V + ++ R FGFVTFA A +V +LA PH + G ++
Sbjct: 14 SAEGLREYFSKFGDVTEVMVMKDPTTRRSRGFGFVTFADAASVDKVLASA-PHELDGKKI 72
Query: 408 LVK---PYREKSKLVDR 421
K P R K+V R
Sbjct: 73 DPKVAFPRRAHPKMVTR 89
>gi|149034887|gb|EDL89607.1| rCG42591, isoform CRA_b [Rattus norvegicus]
Length = 158
Score = 39.7 bits (91), Expect = 4.8, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRR--YQSLNAELPVKTCHYFNKGFCKHG 197
DQ E ++ + +CY+ S G + + + ++ E +K C ++++GFCKHG
Sbjct: 48 DQCEFLHEYDMTKMPECYF----YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 103
Query: 198 SNCRYYH 204
CR+ H
Sbjct: 104 PLCRHRH 110
>gi|25147057|ref|NP_741784.1| Protein H28G03.1, isoform c [Caenorhabditis elegans]
gi|351064184|emb|CCD72473.1| Protein H28G03.1, isoform c [Caenorhabditis elegans]
Length = 335
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF+ +GPV D +R P + R FGFVTFAS + + + PH + G V
Sbjct: 81 TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM-NDRPHKLGGKTV 139
Query: 408 LVKPYREKSKLVDRKYQERMESPMYF 433
+ + + R+ M P +F
Sbjct: 140 ------DSKRAIPREQMSSMIPPPFF 159
>gi|27709546|ref|XP_229073.1| PREDICTED: uncharacterized protein LOC302780 [Rattus norvegicus]
gi|109512293|ref|XP_001066404.1| PREDICTED: uncharacterized protein LOC302780 [Rattus norvegicus]
Length = 565
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 23/117 (19%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+E+ + YF T+G ++ + +P Q++R FGF+ + + V+ +L + HF+ +R
Sbjct: 130 SEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKYMDENPVRKVL-ETRYHFIGSSRC 188
Query: 408 LVK-------PYREKSKLVDR-KYQERMESPMYFSPQYVDMDSELHSFSRGCETSRF 456
VK P R+ SK R K + R P +EL + RG + F
Sbjct: 189 EVKMAFPKEYPARQLSKSKTRAKDRARTAVPA----------AELENHWRGGGSQNF 235
>gi|326928651|ref|XP_003210489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Meleagris gallopavo]
gi|449474690|ref|XP_004175898.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
gi|449474694|ref|XP_002196057.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
Length = 262
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 95 TEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKC 153
Query: 408 LVK 410
+K
Sbjct: 154 EIK 156
>gi|25147051|ref|NP_741783.1| Protein H28G03.1, isoform a [Caenorhabditis elegans]
gi|351064182|emb|CCD72471.1| Protein H28G03.1, isoform a [Caenorhabditis elegans]
Length = 336
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF+ +GPV D +R P + R FGFVTFAS + + + PH + G V
Sbjct: 82 TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM-NDRPHKLGGKTV 140
Query: 408 LVKPYREKSKLVDRKYQERMESPMYF 433
+ + + R+ M P +F
Sbjct: 141 ------DSKRAIPREQMSSMIPPPFF 160
>gi|270014210|gb|EFA10658.1| hypothetical protein TcasGA2_TC016295 [Tribolium castaneum]
Length = 300
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 1 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 59
Query: 390 VKMI 393
V +
Sbjct: 60 VDKV 63
>gi|6566348|dbj|BAA88269.1| RNA binding protein [Arabidopsis thaliana]
Length = 381
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTK------LLARLKNSVRLIDRPHGQHAVIL 314
Y+ +YG VL+A + + + GK G+ + ++ L+++ ++ +P I
Sbjct: 25 YFSRYGAVLEA--VVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIR 82
Query: 315 AED------APKYLENRNERSDPG-------PIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+ + ++LE + ++ + G + + +++I++ + +T TE++ +YF
Sbjct: 83 KHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNT-TEEEFKSYFE 141
Query: 362 TYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+G DV + + R FGFVT+ S D+V++++ + N H + RV VK
Sbjct: 142 RFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM-QSNFHELSDKRVEVK 193
>gi|340377267|ref|XP_003387151.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Amphimedon
queenslandica]
Length = 403
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE---DA 318
Y++K+G +L+ + + G+ + NS++ I H + +I+ + D
Sbjct: 73 YFKKFGVILEC--TIMKDGTGKSRGFGFITF--KDANSIQCILEAHAESPIIIDDKMIDP 128
Query: 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQ 374
+ R + P + R+I++ + T EDD+ +F +GPV++V++
Sbjct: 129 KPAVPKRGNKPTPASQI---RRIFVGGLSSDT-DEDDMKEFFEVFGPVEEVQLMYDKHTN 184
Query: 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 426
+ R FGFVTF + + H + RV VK + K L + + R
Sbjct: 185 RHRGFGFVTFEKVGPAAKVCSIQF-HDLKKKRVEVKVAQTKEALAHQADKAR 235
>gi|15217975|ref|NP_176143.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|12321044|gb|AAG50640.1|AC082643_4 RNA binding protein [Arabidopsis thaliana]
gi|15450912|gb|AAK96727.1| RNA binding protein [Arabidopsis thaliana]
gi|17978725|gb|AAL47356.1| RNA binding protein [Arabidopsis thaliana]
gi|18181938|dbj|BAB83876.1| RNA binding protein [Arabidopsis thaliana]
gi|332195431|gb|AEE33552.1| RNA-binding protein 1 [Arabidopsis thaliana]
Length = 360
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKA-GYSLTK------LLARLKNSVRLIDRPHGQHAVIL 314
Y+ +YG VL+A + + + GK G+ + ++ L+++ ++ +P I
Sbjct: 25 YFSRYGAVLEA--VVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIR 82
Query: 315 AED------APKYLENRNERSDPG-------PIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+ + ++LE + ++ + G + + +++I++ + +T TE++ +YF
Sbjct: 83 KHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNT-TEEEFKSYFE 141
Query: 362 TYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
+G DV + + R FGFVT+ S D+V++++ + N H + RV VK
Sbjct: 142 RFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM-QSNFHELSDKRVEVK 193
>gi|198430431|ref|XP_002129809.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 4 (Cleavage and polyadenylation
specificity factor 30 kDa subunit) (CPSF 30 kDa subunit)
(NS1 effector domain-binding protein 1) (Neb-1) (No
arches homolog) [Ciona intestinalis]
Length = 286
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGR------RYQSLNAELPVKTCHYFNKGF 193
DQ E ++ + +CY+ AR GR +YQ ++ +K C ++++GF
Sbjct: 80 DQCEFLHEYDMSKMPECYFY--------ARFGRCDNKDCQYQHIDPASKIKDCPWYDRGF 131
Query: 194 CKHGSNCRYYH 204
CKHG+ C++ H
Sbjct: 132 CKHGATCKHRH 142
>gi|341874087|gb|EGT30022.1| hypothetical protein CAEBREN_23175 [Caenorhabditis brenneri]
Length = 335
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIP-CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF+ +GPV D +R P + R FGFVTFAS + + + PH + G V
Sbjct: 82 TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM-NDRPHKLGGKTV 140
Query: 408 LVKPYREKSKLVDRKYQERMESPMYF 433
+ + + R+ M P +F
Sbjct: 141 ------DSKRAIPREQMSSMIPPPFF 160
>gi|345490453|ref|XP_001602436.2| PREDICTED: TAR DNA-binding protein 43-like [Nasonia vitripennis]
Length = 476
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410
T DD+ +YF+ +G V DV IP + R F FVTF + + + G H + G V V
Sbjct: 202 LTADDLRDYFSKFGEVTDVFIP-KPFRAFSFVTFLDPEVAQSLC--GEDHIIKGVSVHVS 258
Query: 411 PYREKSKLVDR 421
KS+ +R
Sbjct: 259 NAAPKSEGNNR 269
>gi|148227150|ref|NP_001088992.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus laevis]
gi|52082714|gb|AAU25946.1| p37 AUF1 [Xenopus laevis]
Length = 295
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 353 EDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAK 396
ED + YF T+G V+ + +P K R F F+TF D VK I+ K
Sbjct: 136 EDKIREYFGTFGEVEAIELPMDNKTNKRRGFCFITFKEEDPVKNIMEK 183
>gi|340378269|ref|XP_003387650.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
4-like [Amphimedon queenslandica]
Length = 277
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 134 QFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAE---LPVKTCHYFN 190
Q + D+ E ++ + G CY+ G + Q ++ + L VK C +++
Sbjct: 75 QLCNKGDECEFLHEYDMGRMPVCYF----FQKFGECNNKDCQFMHVDADTLKVKDCPWYD 130
Query: 191 KGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHL 228
+GFCKHG +CR H +FG P+G + H+
Sbjct: 131 RGFCKHGPSCRNRHTRRVMCQKYLFG-FCPEGISCKHV 167
>gi|156086366|ref|XP_001610592.1| RNA recognition motif containing protein [Babesia bovis T2Bo]
gi|154797845|gb|EDO07024.1| RNA recognition motif containing protein [Babesia bovis]
Length = 382
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+ +E+D++N F+ +GP++ + +R F FV F + ++ + + N + G ++
Sbjct: 182 DGKVSEEDLTNAFSKFGPINKI----DYRRNFAFVDFVKSRDAEVAMREMNERVLLGTKL 237
Query: 408 LVKPYREKSK 417
V P+ E+SK
Sbjct: 238 KVVPHSERSK 247
>gi|195016128|ref|XP_001984346.1| GH15068 [Drosophila grimshawi]
gi|193897828|gb|EDV96694.1| GH15068 [Drosophila grimshawi]
Length = 379
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 123 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 181
Query: 390 VKMI 393
V +
Sbjct: 182 VDKV 185
>gi|309266922|ref|XP_003086896.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC237030
[Mus musculus]
gi|309271524|ref|XP_003085337.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC237030
[Mus musculus]
Length = 537
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+E+ + YF T+G ++ + +P Q++R FGF+ + + V+ +L + HF+ +R
Sbjct: 130 SEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKYKDENPVRKVL-ETRYHFIGSSRC 188
Query: 408 LVKPYREKSKLV 419
VK K L
Sbjct: 189 EVKIAYPKENLA 200
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++++ YF YG V D + + R FGFVTFA + V+ L G PH + G +
Sbjct: 31 TQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVERALENG-PHTLDGRTI 89
Query: 408 LVKPYREKS 416
KP +S
Sbjct: 90 DPKPCNPRS 98
>gi|427777107|gb|JAA54005.1| Putative heteroproteinous nuclear ribonucleoprotein at 27c
[Rhipicephalus pulchellus]
Length = 322
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQ---KRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++ + NYF+ +G V D + C + R FGFVTF V +LA G PH + G V
Sbjct: 22 TQESLLNYFSRFGEVVDSVVMCNETGRSRGFGFVTFRDPSCVATVLA-GGPHQLDGRTV 79
>gi|148687912|gb|EDL19859.1| Musashi homolog 1(Drosophila) [Mus musculus]
Length = 280
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 71 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 129
Query: 390 VKMI 393
V+ +
Sbjct: 130 VEKV 133
>gi|195125567|ref|XP_002007249.1| GI12835 [Drosophila mojavensis]
gi|193918858|gb|EDW17725.1| GI12835 [Drosophila mojavensis]
Length = 383
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 127 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 185
Query: 390 VKMI 393
V +
Sbjct: 186 VDKV 189
>gi|194748703|ref|XP_001956784.1| GF24401 [Drosophila ananassae]
gi|190624066|gb|EDV39590.1| GF24401 [Drosophila ananassae]
Length = 370
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 114 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 172
Query: 390 VKMI 393
V +
Sbjct: 173 VDKV 176
>gi|148688488|gb|EDL20435.1| mCG62132 [Mus musculus]
Length = 518
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+E+ + YF T+G ++ + +P Q++R FGF+ + + V+ +L + HF+ +R
Sbjct: 130 SEEKIRAYFGTFGQIEAIELPLCSDTQERRAFGFIKYKDENPVRKVL-ETRYHFIGSSRC 188
Query: 408 LVKPYREKSKLV 419
VK K L
Sbjct: 189 EVKIAYPKENLA 200
>gi|62484464|ref|NP_730245.2| RNA-binding protein 6, isoform A [Drosophila melanogaster]
gi|194872120|ref|XP_001972967.1| GG15829 [Drosophila erecta]
gi|195328324|ref|XP_002030866.1| GM24349 [Drosophila sechellia]
gi|195494905|ref|XP_002095039.1| GE22169 [Drosophila yakuba]
gi|75027590|sp|Q9VVE5.3|MSIR6_DROME RecName: Full=RNA-binding protein Musashi homolog Rbp6
gi|21483526|gb|AAM52738.1| RE25373p [Drosophila melanogaster]
gi|61678495|gb|AAF49366.3| RNA-binding protein 6, isoform A [Drosophila melanogaster]
gi|190654750|gb|EDV51993.1| GG15829 [Drosophila erecta]
gi|194119809|gb|EDW41852.1| GM24349 [Drosophila sechellia]
gi|194181140|gb|EDW94751.1| GE22169 [Drosophila yakuba]
Length = 369
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 113 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 171
Query: 390 VKMI 393
V +
Sbjct: 172 VDKV 175
>gi|195442400|ref|XP_002068946.1| GK18043 [Drosophila willistoni]
gi|194165031|gb|EDW79932.1| GK18043 [Drosophila willistoni]
Length = 386
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 127 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 185
Query: 390 VKMI 393
V +
Sbjct: 186 VDKV 189
>gi|301508557|gb|ADK78240.1| heterogeneous nuclear ribonucleoprotein A2 [Schmidtea mediterranea]
Length = 331
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTV-KMILAKGNPHFVCGAR 406
T + + +YF +YG + D I + R FGFVTF D V K IL K PH + +R
Sbjct: 120 TTEHLRHYFTSYGTITDCEIVTWKDSGESRGFGFVTFDDYDPVDKAILYK--PHQIGSSR 177
Query: 407 VLVKPYREKSKLVDRKYQERME 428
V VK K ++ + + ++ E
Sbjct: 178 VDVKKALSKDEMEEIRRKQHNE 199
>gi|294610680|ref|NP_083246.1| RNA binding motif 31, Y-linked [Mus musculus]
gi|377834528|ref|XP_003689488.1| PREDICTED: uncharacterized protein LOC100861987 [Mus musculus]
gi|377836568|ref|XP_003689057.1| PREDICTED: uncharacterized protein LOC100861987 [Mus musculus]
gi|12856118|dbj|BAB30571.1| unnamed protein product [Mus musculus]
gi|148686366|gb|EDL18313.1| mCG53108 [Mus musculus]
Length = 565
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+E+ + YF T+G ++ + +P +++R FGF+ + ++V+ +L + HF+ +R
Sbjct: 130 SEEKIRAYFGTFGQIEAIELPLCSDTRERRAFGFIKYMDENSVRKVL-ENRYHFIGSSRC 188
Query: 408 LVK-------PYREKSK 417
VK P R+ SK
Sbjct: 189 EVKMAYPKENPARQLSK 205
>gi|449447311|ref|XP_004141412.1| PREDICTED: uncharacterized protein LOC101211898 [Cucumis sativus]
Length = 238
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 351 FTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406
TE++ +YF +G + DV + + R FGFVTF S ++V +L + N H + G R
Sbjct: 27 LTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFGFVTFESLESVDSVLQR-NFHELNGRR 85
Query: 407 VLVK 410
V VK
Sbjct: 86 VEVK 89
>gi|34784575|gb|AAH57067.1| Cpsf4 protein [Mus musculus]
Length = 159
Score = 39.3 bits (90), Expect = 6.0, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 140 DQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRR--YQSLNAELPVKTCHYFNKGFCKHG 197
DQ E ++ + +CY+ S G + + + ++ E +K C ++++GFCKHG
Sbjct: 27 DQCEFLHEYDMTKMPECYF----YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 82
Query: 198 SNCRYYH 204
CR+ H
Sbjct: 83 PLCRHRH 89
>gi|397525478|ref|XP_003832693.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Pan paniscus]
Length = 424
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 177 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 235
Query: 390 VKMI 393
V+ +
Sbjct: 236 VEKV 239
>gi|189241054|ref|XP_968171.2| PREDICTED: similar to CG32169 CG32169-PA [Tribolium castaneum]
Length = 525
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 206 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 264
Query: 390 VKMI 393
V +
Sbjct: 265 VDKV 268
>gi|386771322|ref|NP_001246812.1| RNA-binding protein 6, isoform E [Drosophila melanogaster]
gi|383291983|gb|AFH04483.1| RNA-binding protein 6, isoform E [Drosophila melanogaster]
Length = 259
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 1 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 59
Query: 390 VKMI 393
V +
Sbjct: 60 VDKV 63
>gi|221053642|ref|XP_002258195.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|193808028|emb|CAQ38732.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 360
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 31/156 (19%)
Query: 250 GNPISIASLPML-YYEKYG---KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDR 305
G P +I++ ++ Y+EKYG V+ A + T+ R G++ + +++ LID
Sbjct: 123 GIPQNISNKYLIDYFEKYGPVQNVVIAQDHETKRNR----GFAFVTMSSQINKDKILIDT 178
Query: 306 P--HGQHAVILAED--APKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFN 361
+G+ + E+ P ++ + I G Y +T+D + +YF+
Sbjct: 179 HEFNGKRVDVREENNTTPSDIQRK--------IFVGGLNYY--------WTKDTLESYFS 222
Query: 362 TYGPVDDVRI---PCQQKRMFGFVTFASADTVKMIL 394
+G +D V+I + R FGFV FA +V +L
Sbjct: 223 AFGEIDVVQIVLDSSGRSRCFGFVVFADESSVAKVL 258
>gi|4378711|gb|AAD19638.1| nucleic acid binding factor pRM10 [Rattus norvegicus]
Length = 298
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 184 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 242
Query: 408 LVK 410
+K
Sbjct: 243 EIK 245
>gi|161084522|ref|NP_001097632.1| RNA-binding protein 6, isoform C [Drosophila melanogaster]
gi|158028570|gb|ABW08560.1| RNA-binding protein 6, isoform C [Drosophila melanogaster]
Length = 257
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 1 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 59
Query: 390 VKMI 393
V +
Sbjct: 60 VDKV 63
>gi|442633006|ref|NP_001261979.1| RNA-binding protein 6, isoform G [Drosophila melanogaster]
gi|440215929|gb|AGB94672.1| RNA-binding protein 6, isoform G [Drosophila melanogaster]
Length = 371
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 113 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 171
Query: 390 VKMI 393
V +
Sbjct: 172 VDKV 175
>gi|15242719|ref|NP_198865.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Arabidopsis
thaliana]
gi|9758076|dbj|BAB08520.1| unnamed protein product [Arabidopsis thaliana]
gi|22531255|gb|AAM97131.1| ribonucleoprotein-like [Arabidopsis thaliana]
gi|332007170|gb|AED94553.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Arabidopsis
thaliana]
Length = 423
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
S+ +D+ +F +G + + +I + R FGFVT+ S D V +LAKGN + G
Sbjct: 139 SSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSG 198
Query: 405 ARVLVK 410
+V +K
Sbjct: 199 TQVEIK 204
>gi|16266931|dbj|BAB70469.1| Musashi1 [Homo sapiens]
Length = 179
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
R+ P +VT +++I++ + +T T +DV YF +G VDD + + R FGFVT
Sbjct: 33 RAQP-KMVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 90
Query: 384 FASADTVKMI 393
F S D V+ +
Sbjct: 91 FESEDIVEKV 100
>gi|354546409|emb|CCE43139.1| hypothetical protein CPAR2_207820 [Candida parapsilosis]
Length = 433
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 186 CHYFNKGFCKHGSNCRYYHGLVSESFTQ-----MFGQTSPDGFNDD 226
C +F++G C GSNC+Y H L S+S Q FG+ +NDD
Sbjct: 87 CLFFSRGCCYMGSNCKYLHNLPSKSTYQNQAKDCFGRDKTAEYNDD 132
>gi|25513662|pir||F89530 protein H28G03.1 [imported] - Caenorhabditis elegans
Length = 336
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDD---VRIP-CQQKRMFGFVTFASADTVKMIL 394
R++++ + T T++ + NYF+ +GPV D +R P + R FGFVTFAS + + +
Sbjct: 70 RKLFIGGLSHDT-TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 128
Query: 395 AKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYF 433
PH + G V + + + R+ M P +F
Sbjct: 129 -NDRPHKLGGKTV------DSKRAIPREQMSSMIPPPFF 160
>gi|390608549|dbj|BAM21251.1| musashi homolog protein [Ephydatia fluviatilis]
Length = 362
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
+++++ A T TEDDV ++F +GPV ++ + Q+ R FGFV F S D V L
Sbjct: 106 KKVFVGGIAAGT-TEDDVRSFFGQFGPVTEIDLKFDKATQRMRGFGFVGFDSEDVVDR-L 163
Query: 395 AKGNPHFVCGARVLVK 410
+ + H + G V VK
Sbjct: 164 CQIHFHQINGKTVEVK 179
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRI---PCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TED + YF+ YG V D I P ++ R FGFVTF +V+ ++ G PH + +
Sbjct: 24 TEDGLKQYFSKYGEVSDCVIMQDPMTKRPRGFGFVTFTDQASVEEVMKNG-PHTLDNKTI 82
Query: 408 LVKPYREKS 416
KP KS
Sbjct: 83 DPKPATMKS 91
>gi|218196677|gb|EEC79104.1| hypothetical protein OsI_19737 [Oryza sativa Indica Group]
Length = 297
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 298 NSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVS 357
N ++++ P G+ + D P R G + TG + P E+ DD+
Sbjct: 115 NRMKMLGTPQGELFRATSYDHPGPAYGRGHIG--GSLGTGKKIFVGRLPQEAN--TDDLW 170
Query: 358 NYFNTYGPVDDVRIPCQQKRM----FGFVTFASADTVKMILAKGNPHFVCGARVLV 409
+YF +G + D IP KR FGFVTFA + + H + G V V
Sbjct: 171 DYFGRFGRIVDAYIPKDPKRSGHGGFGFVTFADDGVADRVAQR--SHEILGQEVAV 224
>gi|25147054|ref|NP_741785.1| Protein H28G03.1, isoform b [Caenorhabditis elegans]
gi|351064183|emb|CCD72472.1| Protein H28G03.1, isoform b [Caenorhabditis elegans]
Length = 315
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDD---VRIP-CQQKRMFGFVTFASADTVKMIL 394
R++++ + T T++ + NYF+ +GPV D +R P + R FGFVTFAS + + +
Sbjct: 49 RKLFIGGLSHDT-TDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 107
Query: 395 AKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYF 433
PH + G V + + + R+ M P +F
Sbjct: 108 -NDRPHKLGGKTV------DSKRAIPREQMSSMIPPPFF 139
>gi|351704017|gb|EHB06936.1| Heterogeneous nuclear ribonucleoprotein A/B, partial
[Heterocephalus glaber]
Length = 261
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H + G++
Sbjct: 96 TEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTISGSKC 154
Query: 408 LVK 410
+K
Sbjct: 155 EIK 157
>gi|16041061|dbj|BAB69768.1| Musashi1 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
R+ P +VT +++I++ + +T T +DV YF +G VDD + + R FGFVT
Sbjct: 36 RAQP-KMVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 93
Query: 384 FASADTVKMI 393
F S D V+ +
Sbjct: 94 FESEDIVEKV 103
>gi|16041063|dbj|BAB69769.1| Musashi1 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
R+ P +VT +++I++ + +T T +DV YF +G VDD + + R FGFVT
Sbjct: 36 RAQP-KMVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 93
Query: 384 FASADTVKMI 393
F S D V+ +
Sbjct: 94 FESEDIVEKV 103
>gi|30682550|ref|NP_851001.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17065240|gb|AAL32774.1| Unknown protein [Arabidopsis thaliana]
gi|20260060|gb|AAM13377.1| unknown protein [Arabidopsis thaliana]
gi|332641793|gb|AEE75314.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 231
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGN 398
ST TED++ ++F YG V + ++ + R FGFV F S + V +L+KGN
Sbjct: 118 STVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>gi|16041059|dbj|BAB69767.1| Musashi1 [Homo sapiens]
Length = 180
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
R+ P +VT +++I++ + +T T +DV YF +G VDD + + R FGFVT
Sbjct: 36 RAQP-KMVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 93
Query: 384 FASADTVKMI 393
F S D V+ +
Sbjct: 94 FESEDIVEKV 103
>gi|384248222|gb|EIE21707.1| RNA-binding domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 128
Score = 38.9 bits (89), Expect = 7.3, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 327 ERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFV 382
+RS P R++++ A T TED+ YF +G + + +I + R FGF+
Sbjct: 45 KRSLPQSQKPKLRKLFVGGLAPET-TEDNFKEYFGQFGDITEAQIMQDHTSGRSRGFGFI 103
Query: 383 TFASADTVKMILAKGNPHFVCGARV 407
T+ + ++ + AKG H + G V
Sbjct: 104 TYEDEEAIEKVFAKGRMHELAGKNV 128
>gi|254578778|ref|XP_002495375.1| ZYRO0B09790p [Zygosaccharomyces rouxii]
gi|238938265|emb|CAR26442.1| ZYRO0B09790p [Zygosaccharomyces rouxii]
Length = 198
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGAR 406
F E ++S YF+ +G + D R+ +K R +GF+ F + D K+ N + + G
Sbjct: 80 FQEKELSKYFSQFGDLKDARLARNKKTGNTRHYGFIEFVNKDDAKVAQETMNNYLLMGHL 139
Query: 407 VLVK 410
+ V+
Sbjct: 140 IQVR 143
>gi|194695198|gb|ACF81683.1| unknown [Zea mays]
gi|414592148|tpg|DAA42719.1| TPA: hypothetical protein ZEAMMB73_519506 [Zea mays]
Length = 313
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 326 NERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFG 380
N +D G V GS+++++ + T TE++ YF T+G V DV + + R FG
Sbjct: 123 NGTADSGDNVNYGSKKVFVGGLQDDT-TEEEFRAYFETFGTVTDVAVIYDSATNRSRGFG 181
Query: 381 FVTFASADTVKMILAKGNPHFVCGARVLVK 410
FVTF S + V ++ + + H + G +V K
Sbjct: 182 FVTFDSEEAVGKVMRQ-SFHDLNGTKVEAK 210
>gi|357631285|gb|EHJ78874.1| TAR DNA binding protein-like protein [Danaus plexippus]
Length = 305
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398
R++++ ES T DD+ YF +G V DV +P + R F FVTF + + + G
Sbjct: 176 RKVFVGRCTES-LTADDLREYFGAFGQVTDVFVP-KPFRAFSFVTFLDPEVAQSLC--GQ 231
Query: 399 PHFVCGARVLV---KPYREKS 416
H + G V + P RE S
Sbjct: 232 DHVIKGVSVNISTASPKREHS 252
>gi|149063558|gb|EDM13881.1| rCG21724, isoform CRA_b [Rattus norvegicus]
Length = 262
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 53 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 111
Query: 390 VKMI 393
V+ +
Sbjct: 112 VEKV 115
>gi|110738919|dbj|BAF01381.1| hypothetical protein [Arabidopsis thaliana]
Length = 205
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGN 398
ST TED++ ++F YG V + ++ + R FGFV F S + V +L+KGN
Sbjct: 118 STVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>gi|406602666|emb|CCH45778.1| Nucleolysin TIA-1 isoform [Wickerhamomyces ciferrii]
Length = 485
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
S TED++ YF +G + V+IP + GFV + + + ++ ++K + + +R+
Sbjct: 303 SIVTEDELRLYFQPFGDITYVKIPV--GKGCGFVQYVTRSSAELAISKMQGYPIGNSRIR 360
Query: 409 VKPYREKSKLVDRKYQERMESPMYF----SPQY 437
+ R S + Y+++ E P+ + SPQ+
Sbjct: 361 LSWGRSNSNPKPQGYKQQPELPLLYGYNPSPQF 393
>gi|426247780|ref|XP_004017654.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Ovis aries]
Length = 325
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 94 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 152
Query: 390 VKMI 393
V+ +
Sbjct: 153 VEKV 156
>gi|344249205|gb|EGW05309.1| RNA-binding protein Musashi-like 1 [Cricetulus griseus]
Length = 338
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 71 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 129
Query: 390 VKMI 393
V+ +
Sbjct: 130 VEKV 133
>gi|255560914|ref|XP_002521470.1| RNA binding protein, putative [Ricinus communis]
gi|223539369|gb|EEF40960.1| RNA binding protein, putative [Ricinus communis]
Length = 2256
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
+T TE + +F YG V + +I + R FGF+TF + V +LAKGN + G
Sbjct: 2024 TTVTEVEFKEFFMQYGEVIEHQIMRDHSTNRSRGFGFITFDTEQAVDDLLAKGNKLELAG 2083
Query: 405 ARVLVKPYREK 415
+V +K K
Sbjct: 2084 GQVEIKKAEPK 2094
>gi|118344564|ref|NP_001072050.1| probable E3 ubiquitin-protein ligase makorin-1 [Takifugu rubripes]
gi|75570704|sp|Q5NU14.1|MKRN1_TAKRU RecName: Full=Probable E3 ubiquitin-protein ligase makorin-1
gi|56709991|dbj|BAD80899.1| makorin RING zinc finger protein 1a [Takifugu rubripes]
Length = 429
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVS 208
TC YF G CK G NCRY H L S
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTS 46
>gi|347970001|ref|XP_309663.5| AGAP003497-PA [Anopheles gambiae str. PEST]
gi|333466662|gb|EAA05403.6| AGAP003497-PA [Anopheles gambiae str. PEST]
Length = 569
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
DD+ +YF+ YG V DV IP + R F FVTF + + G H + G V V
Sbjct: 212 INSDDIRDYFSKYGEVTDVFIP-KPFRAFAFVTFIDPHVAQSLC--GEDHLIKGTSVYV 267
>gi|348686519|gb|EGZ26334.1| hypothetical protein PHYSODRAFT_555909 [Phytophthora sojae]
Length = 343
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 147 LGNTGFSSDCYYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHG- 205
LG + S C YS A + A + L+A + C +F +G CK+G +CR H
Sbjct: 80 LGKCRYGSRCTYSHALPEQVSECAADEAEGLSAAAALVDCPFFLRGNCKYGEHCRLRHNP 139
Query: 206 --LVSESFTQMFGQTSPDGFND-------------DHLFSPGSLEK------LELEIIEL 244
L+ + + F T F+D DH F L + +ELE+I
Sbjct: 140 AMLLGAATSAHF--TCGICFDDIIQSGKHFGLLSCDHCFCLDCLREWRQSKDMELEVIRA 197
Query: 245 LKARR-GNPISIASLPMLYYEKYGKVLQA 272
A R + + SL E+ KV++A
Sbjct: 198 CPACRVPSDFIVPSLIFCKGEEKRKVVEA 226
>gi|148909135|gb|ABR17668.1| unknown [Picea sitchensis]
Length = 411
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404
++ TED+ +YF+ +G V + +I + R FGF+TF + V+ I+++G + G
Sbjct: 138 TSITEDEFKDYFSKFGKVVEHQIMQDRNTGRSRGFGFITFETEQAVEEIISQGRMLELGG 197
Query: 405 ARVLVKPYREKSKLVD 420
+V +K K L D
Sbjct: 198 KQVEIKKAEPKKPLPD 213
>gi|355564741|gb|EHH21241.1| hypothetical protein EGK_04258 [Macaca mulatta]
Length = 324
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 328 RSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVT 383
R+ P +VT +++I++ + +T T +DV YF +G VDD + + R FGFVT
Sbjct: 80 RAQP-KMVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 137
Query: 384 FASADTVKMI 393
F S D V+ +
Sbjct: 138 FESEDIVEKV 147
>gi|334349522|ref|XP_003342214.1| PREDICTED: e3 ubiquitin-protein ligase makorin-1-like [Monodelphis
domestica]
Length = 374
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGL 206
TC YF GFC+ G NC+Y HGL
Sbjct: 46 TCRYFLNGFCREGDNCQYSHGL 67
>gi|126304534|ref|XP_001362686.1| PREDICTED: putative ATP-dependent RNA helicase DHX57 [Monodelphis
domestica]
Length = 1363
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 39/284 (13%)
Query: 39 LAMSPDVVIQEVVYKAKAELQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAG 98
+ +SP V + Y E Q A+KS + S+ +++ + P R +S A
Sbjct: 157 IEISPFAVQKLSRYGFNTEHCQAALKSCEGDVGASLEYLLSQCFSERYP--ERKEISGAA 214
Query: 99 CRVPSYWDHQVTNKNNSDFV--ALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDC 156
V W+ V + F ++ + +Q++ + LE +EH
Sbjct: 215 SSVS--WEECVEQRQEEAFALQSICGEKFVERIQNRVWTIGLE--LEH------------ 258
Query: 157 YYSDAALSNLGARAGRRYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFG 216
L+N ++ ++ + + C ++ +G C+ GS C++ H E+ ++
Sbjct: 259 ------LTNKLCKSKQKESAKKVQFSRGICQFYLQGSCRFGSKCKFRH----ENPSRQLS 308
Query: 217 QTSPDGFNDDHLFSPGS---LEKLELEIIELLKARRGNPI----SI-ASLPMLYYEKYGK 268
+ + +D HL S G L +LE+ E K P+ SI +LP+ +
Sbjct: 309 RKTERSKDDSHLRSNGDVSFLYELEIRFSEDSKYPFQAPLVAFYSINENLPLACRLHISE 368
Query: 269 VLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAV 312
L G LT ++ YSL LL K +L+ H +++V
Sbjct: 369 FL-YGKALTFAETAEPVVYSLITLLEDEKEIAKLLTNTHHKYSV 411
>gi|297263669|ref|XP_001087753.2| PREDICTED: hypothetical protein LOC699286 [Macaca mulatta]
Length = 696
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 234 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 292
Query: 390 VKMI 393
V+ +
Sbjct: 293 VEKV 296
>gi|281210598|gb|EFA84764.1| CCCH-type zinc finger-containing protein [Polysphondylium pallidum
PN500]
Length = 374
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 155 DCYYSDAALSNLGARAGRR--YQSLNAELPVKTCHYFNKGFCKHGSNCRYYH--GLVSES 210
+CY+ S G + + Y LN E V C ++ +GFCKHG CR+ H L+ E+
Sbjct: 93 ECYF----FSKFGECSNQECMYLHLNPEEKVIECPWYARGFCKHGPKCRHKHVKKLLCEN 148
Query: 211 FTQMFGQTSP 220
F F P
Sbjct: 149 FYLGFCPEGP 158
>gi|244790069|ref|NP_001156444.1| TAR DNA binding protein-like [Acyrthosiphon pisum]
gi|239792762|dbj|BAH72685.1| ACYPI004992 [Acyrthosiphon pisum]
Length = 333
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411
+E D+S YF+ YG + DV IP + R FGFVTF A + + + H V G + +
Sbjct: 202 SEPDLSKYFSQYGEITDVFIP-KPFRAFGFVTFNDASVAQSLCDED--HIVKGVSLHISE 258
Query: 412 YREKS 416
KS
Sbjct: 259 ANPKS 263
>gi|57864224|dbj|BAD86842.1| makorin RING finger protein 1b [Takifugu rubripes]
Length = 344
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVS 208
TC YF G CK G NCRY H L S
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTS 46
>gi|307199474|gb|EFN80087.1| TAR DNA-binding protein 43 [Harpegnathos saltator]
Length = 467
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARL---KNSVRLIDRPHGQHAVILAEDA 318
Y+E++G+VL A + ++ K+G S R ++ +R + + H +I
Sbjct: 125 YFEQFGEVLMA-----QVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRH----MIDG--- 172
Query: 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM 378
++ + + S G I ++++ E T DD+ +YF+ +G V DV IP + R
Sbjct: 173 -RWCDVKVPNSKEGMIQQVPCKVFVGRCTED-LTADDLRDYFSKFGEVTDVFIP-KPFRA 229
Query: 379 FGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417
F FVTF + + + G H + G V V KS+
Sbjct: 230 FSFVTFLDPEVAQSLC--GEDHIIKGVSVHVSNAAPKSE 266
>gi|321469931|gb|EFX80909.1| hypothetical protein DAPPUDRAFT_224415 [Daphnia pulex]
Length = 464
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T D++ YF+ YG V D + + R FGF+TFA + V ++L + PH + +
Sbjct: 32 TRDNLLRYFSQYGEVVDCVVMKNPETGRSRGFGFITFADPNNVGLVL-QNTPHILDNRTI 90
Query: 408 LVKPYREKSKLV 419
KP ++++V
Sbjct: 91 DPKPCNPRAEMV 102
>gi|432942710|ref|XP_004083045.1| PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like
isoform 1 [Oryzias latipes]
Length = 429
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVSESFTQMF 215
TC YF G CK G NCRY H L S M
Sbjct: 21 TCRYFMHGLCKEGDNCRYSHDLTSSKPATMI 51
>gi|242025582|ref|XP_002433203.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
gi|212518744|gb|EEB20465.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
Length = 272
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMIL 394
+ FTE+ + +F+ YG + DV+ P QKR + F+TF + DTV +L
Sbjct: 112 TDFTEEKIKEHFSQYGKITDVQWPFDRQKNQKRAYCFLTFENRDTVTELL 161
>gi|427783159|gb|JAA57031.1| Putative transcriptional coactivator caper rrm superfamily
[Rhipicephalus pulchellus]
Length = 906
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 179 AELPVKTCHYFNKGFCKHGSNCRYYH-GLVSESFTQMF 215
A+ P C +FNKG C GS+CR+ H G+ MF
Sbjct: 209 AQAPRPICRFFNKGQCTWGSSCRFIHPGINDRGNYNMF 246
>gi|6678940|ref|NP_032655.1| RNA-binding protein Musashi homolog 1 [Mus musculus]
gi|51316207|sp|Q61474.1|MSI1H_MOUSE RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|1434857|dbj|BAA08530.1| RNA-binding protein [Mus musculus]
gi|147897761|gb|AAI40423.1| Musashi homolog 1(Drosophila) [synthetic construct]
gi|148921876|gb|AAI46539.1| Musashi homolog 1(Drosophila) [synthetic construct]
Length = 362
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 104 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 162
Query: 390 VKMI 393
V+ +
Sbjct: 163 VEKV 166
>gi|380806927|gb|AFE75339.1| RNA-binding protein Musashi homolog 1, partial [Macaca mulatta]
Length = 216
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 60 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 118
Query: 390 VKMI 393
V+ +
Sbjct: 119 VEKV 122
>gi|350592544|ref|XP_003359176.2| PREDICTED: RNA-binding protein Musashi homolog 1-like, partial [Sus
scrofa]
Length = 411
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 153 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 211
Query: 390 VKMI 393
V+ +
Sbjct: 212 VEKV 215
>gi|241154571|ref|XP_002407336.1| conserved hypothetical protein [Ixodes scapularis]
gi|215494097|gb|EEC03738.1| conserved hypothetical protein [Ixodes scapularis]
Length = 275
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCG 404
++ TED + F GPV++V+IP Q + F FVTF AD++ LA + G
Sbjct: 16 DAKVTEDLLRELFVQGGPVEEVKIPKTSDGQSKNFAFVTFVHADSLSYSLALLEGTCLFG 75
Query: 405 ARVLVKPYREKSKLVDRKYQERM 427
R+ ++ R +D KY + M
Sbjct: 76 RRLKLE--RRPRATIDDKYVDMM 96
>gi|291407048|ref|XP_002719860.1| PREDICTED: musashi 1 [Oryctolagus cuniculus]
Length = 568
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 310 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 368
Query: 390 VKMI 393
V+ +
Sbjct: 369 VEKV 372
>gi|443691822|gb|ELT93572.1| hypothetical protein CAPTEDRAFT_180669 [Capitella teleta]
Length = 243
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + ST T DDV YF +G ++D + Q+ R F FVTF + D
Sbjct: 112 LVTKTKKIFVGGLSAST-TVDDVKQYFEQFGKIEDAMLMFDKATQRHRGFAFVTFENEDV 170
Query: 390 VKMI 393
V +
Sbjct: 171 VDKV 174
>gi|348584450|ref|XP_003477985.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cavia
porcellus]
Length = 366
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 108 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 166
Query: 390 VKMI 393
V+ +
Sbjct: 167 VEKV 170
>gi|22507308|ref|NP_683688.1| RNA-binding protein Musashi homolog 1 [Rattus norvegicus]
gi|51316134|sp|Q8K3P4.1|MSI1H_RAT RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|22073952|gb|AAK94485.1| RNA-binding protein Musashi-1 [Rattus norvegicus]
Length = 362
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 104 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 162
Query: 390 VKMI 393
V+ +
Sbjct: 163 VEKV 166
>gi|449477049|ref|XP_002196403.2| PREDICTED: RNA-binding protein Musashi homolog 1 [Taeniopygia
guttata]
Length = 330
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 83 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 141
Query: 390 VKMI 393
V+ +
Sbjct: 142 VEKV 145
>gi|432942712|ref|XP_004083046.1| PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like
isoform 2 [Oryzias latipes]
Length = 436
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQ 217
TC YF G CK G NCRY H L S M +
Sbjct: 21 TCRYFMHGLCKEGDNCRYSHDLTSSKPATMICK 53
>gi|149063557|gb|EDM13880.1| rCG21724, isoform CRA_a [Rattus norvegicus]
Length = 311
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 53 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 111
Query: 390 VKMI 393
V+ +
Sbjct: 112 VEKV 115
>gi|410920299|ref|XP_003973621.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Takifugu rubripes]
Length = 350
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF+ +G VDD + + R FGFVTF + D
Sbjct: 106 LVTRTKKIFVGGLSVNT-TIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDV 164
Query: 390 VKMI 393
V+ +
Sbjct: 165 VEKV 168
>gi|431892736|gb|ELK03169.1| Heterogeneous nuclear ribonucleoprotein A/B [Pteropus alecto]
Length = 230
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF + VK +L K H + G++
Sbjct: 64 TEEKIREYFGEFGEIEAIELPVDPKSNKRRGFVFITFKEEEPVKKVLEK-KFHTISGSKC 122
Query: 408 LVK 410
+K
Sbjct: 123 EIK 125
>gi|403281821|ref|XP_003932373.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Saimiri
boliviensis boliviensis]
Length = 352
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 105 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 163
Query: 390 VKMI 393
V+ +
Sbjct: 164 VEKV 167
>gi|410976792|ref|XP_003994797.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Felis catus]
Length = 380
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 122 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 180
Query: 390 VKMI 393
V+ +
Sbjct: 181 VEKV 184
>gi|302758358|ref|XP_002962602.1| hypothetical protein SELMODRAFT_438270 [Selaginella moellendorffii]
gi|300169463|gb|EFJ36065.1| hypothetical protein SELMODRAFT_438270 [Selaginella moellendorffii]
Length = 1912
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHG 205
K CHYF +G C++G CR+ HG
Sbjct: 182 KQCHYFQRGHCRNGHLCRFSHG 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,155,644,619
Number of Sequences: 23463169
Number of extensions: 397297663
Number of successful extensions: 962184
Number of sequences better than 100.0: 887
Number of HSP's better than 100.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 686
Number of HSP's that attempted gapping in prelim test: 960350
Number of HSP's gapped (non-prelim): 1678
length of query: 565
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 417
effective length of database: 8,886,646,355
effective search space: 3705731530035
effective search space used: 3705731530035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)