Query 008441
Match_columns 565
No_of_seqs 438 out of 1793
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.9 2.4E-24 8.3E-29 195.9 12.2 132 156-295 3-135 (141)
2 3u3g_D Ribonuclease H, RNAse H 99.9 4.4E-24 1.5E-28 193.5 12.0 131 156-294 3-138 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.9 1.1E-23 3.6E-28 194.1 13.2 132 156-295 1-136 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.8 1.6E-18 5.3E-23 160.5 12.2 129 154-293 5-151 (154)
5 2kq2_A Ribonuclease H-related 99.8 1.5E-18 5E-23 159.6 10.3 128 154-295 4-139 (147)
6 3h08_A RNH (ribonuclease H); R 99.7 2.7E-18 9.1E-23 157.4 9.1 127 155-294 3-145 (146)
7 2e4l_A Ribonuclease HI, RNAse 99.7 2.6E-17 9E-22 153.0 9.2 126 155-293 5-145 (158)
8 1jl1_A Ribonuclease HI; RNAse 99.7 2.4E-17 8.2E-22 152.8 8.7 126 156-294 4-144 (155)
9 2lsn_A Reverse transcriptase; 99.7 1.4E-16 4.6E-21 148.9 13.5 130 154-292 5-162 (165)
10 3qio_A GAG-POL polyprotein; RN 99.7 2.7E-17 9.2E-22 151.6 8.5 123 154-293 10-147 (150)
11 1ril_A Ribonuclease H; hydrola 99.7 2.6E-17 8.8E-22 154.3 6.8 127 155-294 7-149 (166)
12 3p1g_A Xenotropic murine leuke 99.7 4.5E-16 1.5E-20 145.5 13.5 125 154-294 21-157 (165)
13 1wd2_A Ariadne-1 protein homol 99.7 1.3E-17 4.4E-22 128.8 1.6 51 476-526 5-59 (60)
14 4htu_A Ribonuclease H, RNAse H 99.7 1.1E-16 3.6E-21 143.5 7.5 103 156-269 5-114 (134)
15 1zbf_A Ribonuclease H-related 99.7 6.2E-17 2.1E-21 147.4 5.5 100 154-264 9-112 (142)
16 1wim_A KIAA0161 protein; ring 99.5 1.4E-14 4.9E-19 122.6 7.7 86 306-391 3-92 (94)
17 1mu2_A HIV-2 RT; HIV-2 reverse 99.5 2.1E-14 7.1E-19 159.1 8.0 117 154-290 434-554 (555)
18 2zd1_A Reverse transcriptase/r 99.4 3E-14 1E-18 158.0 4.1 117 154-290 437-557 (557)
19 2ct7_A Ring finger protein 31; 99.0 5E-12 1.7E-16 105.1 -4.5 72 375-461 5-80 (86)
20 2jmo_A Parkin; IBR, E3 ligase, 98.9 6.9E-11 2.4E-15 96.8 -3.4 69 371-453 2-75 (80)
21 4ap4_A E3 ubiquitin ligase RNF 98.8 1.8E-10 6E-15 102.7 -2.6 117 307-490 6-126 (133)
22 3hcs_A TNF receptor-associated 98.6 1.8E-08 6.1E-13 94.2 5.3 120 304-451 14-133 (170)
23 2ecm_A Ring finger and CHY zin 98.3 4.3E-07 1.5E-11 68.0 4.4 50 307-364 4-54 (55)
24 1rmd_A RAG1; V(D)J recombinati 98.3 3.7E-07 1.3E-11 79.6 4.5 84 307-411 22-105 (116)
25 2yu4_A E3 SUMO-protein ligase 98.3 8.9E-07 3E-11 74.4 6.4 61 306-368 5-66 (94)
26 2ecv_A Tripartite motif-contai 98.3 6.7E-07 2.3E-11 72.9 5.1 57 306-367 17-73 (85)
27 2ct2_A Tripartite motif protei 98.3 3.6E-07 1.2E-11 75.3 3.4 61 306-371 13-74 (88)
28 3hct_A TNF receptor-associated 98.3 7.2E-07 2.5E-11 78.1 5.6 85 305-411 15-99 (118)
29 1jm7_A BRCA1, breast cancer ty 98.3 6.6E-07 2.2E-11 77.3 4.8 54 308-369 21-74 (112)
30 2kiz_A E3 ubiquitin-protein li 98.2 1.4E-06 4.9E-11 68.4 5.9 53 305-365 11-63 (69)
31 2ecw_A Tripartite motif-contai 98.2 9.5E-07 3.2E-11 72.0 4.0 57 306-367 17-73 (85)
32 3ng2_A RNF4, snurf, ring finge 98.2 3.4E-07 1.2E-11 72.3 1.1 56 306-369 8-67 (71)
33 1x4j_A Ring finger protein 38; 98.2 7.3E-07 2.5E-11 71.4 3.1 52 306-365 21-72 (75)
34 2djb_A Polycomb group ring fin 98.2 7.9E-07 2.7E-11 70.7 3.1 53 306-368 13-65 (72)
35 3lrq_A E3 ubiquitin-protein li 98.2 1.3E-06 4.4E-11 74.3 4.3 54 307-369 21-74 (100)
36 2ep4_A Ring finger protein 24; 98.1 1.5E-06 5.1E-11 69.3 4.4 51 306-364 13-63 (74)
37 2ysl_A Tripartite motif-contai 98.1 8E-07 2.7E-11 70.6 2.8 55 305-367 17-71 (73)
38 2ect_A Ring finger protein 126 98.1 6.8E-07 2.3E-11 72.1 2.3 54 306-367 13-66 (78)
39 2ecy_A TNF receptor-associated 98.1 1.4E-06 4.8E-11 67.9 3.8 52 306-367 13-64 (66)
40 2xeu_A Ring finger protein 4; 98.1 5.6E-07 1.9E-11 69.4 1.2 54 308-369 3-60 (64)
41 3ztg_A E3 ubiquitin-protein li 98.1 2.3E-06 7.9E-11 71.2 4.7 49 306-363 11-60 (92)
42 2y43_A E3 ubiquitin-protein li 98.1 2.5E-06 8.6E-11 72.1 4.9 66 307-382 21-87 (99)
43 2ysj_A Tripartite motif-contai 98.1 3.8E-06 1.3E-10 64.8 5.4 46 305-356 17-62 (63)
44 1t1h_A Gspef-atpub14, armadill 98.1 2.1E-06 7.3E-11 69.1 4.1 65 307-381 7-72 (78)
45 1iym_A EL5; ring-H2 finger, ub 98.1 2.2E-06 7.5E-11 64.1 3.5 50 307-364 4-54 (55)
46 2ea6_A Ring finger protein 4; 98.1 2.4E-06 8.4E-11 66.8 3.9 52 305-364 12-67 (69)
47 3knv_A TNF receptor-associated 98.1 4.6E-07 1.6E-11 82.1 -0.5 87 306-411 29-121 (141)
48 1g25_A CDK-activating kinase a 98.0 1.6E-06 5.5E-11 67.4 2.4 55 308-369 3-59 (65)
49 2d8t_A Dactylidin, ring finger 98.0 1.6E-06 5.4E-11 68.7 2.0 53 305-368 12-64 (71)
50 1e4u_A Transcriptional repress 98.0 1.9E-06 6.7E-11 69.8 2.5 55 306-367 9-64 (78)
51 2yur_A Retinoblastoma-binding 98.0 5.7E-06 1.9E-10 66.1 5.1 52 305-364 12-63 (74)
52 3fl2_A E3 ubiquitin-protein li 98.0 4.3E-06 1.5E-10 73.7 4.3 49 307-365 51-99 (124)
53 2l0b_A E3 ubiquitin-protein li 98.0 4.8E-06 1.7E-10 69.4 4.2 52 306-365 38-89 (91)
54 3htk_C E3 SUMO-protein ligase 98.0 4.1E-06 1.4E-10 82.6 4.2 75 304-384 177-252 (267)
55 2csy_A Zinc finger protein 183 97.9 8.9E-06 3.1E-10 66.0 5.4 48 306-364 13-60 (81)
56 2egp_A Tripartite motif-contai 97.9 9.4E-07 3.2E-11 71.3 -0.6 58 306-368 10-68 (79)
57 2ckl_A Polycomb group ring fin 97.9 3.7E-06 1.3E-10 72.2 2.8 49 307-365 14-62 (108)
58 1chc_A Equine herpes virus-1 r 97.9 8.7E-06 3E-10 63.6 4.3 47 308-364 5-51 (68)
59 2kr4_A Ubiquitin conjugation f 97.9 1.8E-05 6.3E-10 65.0 6.0 65 307-382 13-78 (85)
60 1jm7_B BARD1, BRCA1-associated 97.8 4.1E-06 1.4E-10 73.2 1.7 64 307-382 21-85 (117)
61 1v87_A Deltex protein 2; ring- 97.8 1.2E-05 4.2E-10 69.6 4.4 54 308-364 25-93 (114)
62 3l11_A E3 ubiquitin-protein li 97.8 8.3E-06 2.8E-10 70.8 3.0 50 306-365 13-62 (115)
63 4ayc_A E3 ubiquitin-protein li 97.8 1.1E-05 3.9E-10 72.4 3.9 47 308-365 53-99 (138)
64 1z6u_A NP95-like ring finger p 97.8 1.4E-05 4.7E-10 73.1 4.0 49 308-366 78-126 (150)
65 2ecj_A Tripartite motif-contai 97.8 1.5E-05 5.2E-10 60.0 3.5 45 306-356 13-57 (58)
66 2ckl_B Ubiquitin ligase protei 97.7 2.7E-05 9.3E-10 72.0 4.3 49 307-364 53-101 (165)
67 1wgm_A Ubiquitin conjugation f 97.6 2.6E-05 8.9E-10 66.0 3.6 51 306-367 20-71 (98)
68 2kre_A Ubiquitin conjugation f 97.6 2.2E-05 7.6E-10 66.7 3.2 51 306-367 27-77 (100)
69 2ecn_A Ring finger protein 141 97.6 6.5E-06 2.2E-10 64.8 -0.6 46 307-364 14-59 (70)
70 2ct7_A Ring finger protein 31; 97.6 1.2E-05 4.1E-10 66.4 0.8 51 476-526 24-75 (86)
71 2ecl_A Ring-box protein 2; RNF 97.6 2.4E-05 8.1E-10 63.7 2.4 53 307-367 14-78 (81)
72 1bor_A Transcription factor PM 97.6 1.6E-05 5.4E-10 60.0 1.1 46 306-365 4-49 (56)
73 2c2l_A CHIP, carboxy terminus 97.4 0.00033 1.1E-08 69.6 8.0 52 306-367 206-257 (281)
74 2f42_A STIP1 homology and U-bo 97.2 0.00034 1.2E-08 65.5 5.7 52 306-367 104-155 (179)
75 4ic3_A E3 ubiquitin-protein li 97.2 0.00013 4.5E-09 58.2 2.2 42 308-364 24-66 (74)
76 2jmo_A Parkin; IBR, E3 ligase, 97.2 0.0001 3.6E-09 59.8 1.6 38 477-514 25-70 (80)
77 2d8s_A Cellular modulator of i 97.2 0.0005 1.7E-08 55.8 5.6 55 305-366 12-71 (80)
78 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00012 4E-09 64.6 1.4 57 305-369 69-129 (133)
79 2ecg_A Baculoviral IAP repeat- 97.0 0.00025 8.6E-09 56.6 2.5 43 308-365 25-68 (75)
80 3dpl_R Ring-box protein 1; ubi 97.0 0.00023 7.7E-09 61.1 2.3 51 307-365 36-101 (106)
81 2ea5_A Cell growth regulator w 96.9 0.00088 3E-08 52.5 4.9 47 304-365 11-58 (68)
82 2y1n_A E3 ubiquitin-protein li 96.9 0.00058 2E-08 71.3 4.6 49 308-366 332-380 (389)
83 2vje_A E3 ubiquitin-protein li 96.8 0.00058 2E-08 52.8 2.7 49 306-364 6-56 (64)
84 2vje_B MDM4 protein; proto-onc 96.8 0.00043 1.5E-08 53.4 1.9 50 306-364 5-55 (63)
85 4a0k_B E3 ubiquitin-protein li 96.8 0.00024 8.3E-09 61.9 0.3 52 307-366 47-113 (117)
86 2yho_A E3 ubiquitin-protein li 96.4 0.00083 2.8E-08 54.3 1.5 43 308-365 18-61 (79)
87 3t6p_A Baculoviral IAP repeat- 95.7 0.0029 9.9E-08 65.4 1.8 43 307-364 294-337 (345)
88 2ct0_A Non-SMC element 1 homol 95.7 0.0068 2.3E-07 48.2 3.5 51 307-365 14-64 (74)
89 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0071 2.4E-07 61.7 4.3 58 306-365 306-373 (381)
90 2bay_A PRE-mRNA splicing facto 95.5 0.011 3.7E-07 45.1 3.8 51 308-368 3-53 (61)
91 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.0094 3.2E-07 50.0 2.5 33 308-340 3-35 (101)
92 1wd2_A Ariadne-1 protein homol 92.8 0.06 2E-06 40.9 2.8 38 393-445 5-44 (60)
93 3vk6_A E3 ubiquitin-protein li 92.8 0.073 2.5E-06 44.4 3.4 33 310-344 3-35 (101)
94 2cs3_A Protein C14ORF4, MY039 91.1 0.51 1.7E-05 37.5 6.3 50 305-355 12-62 (93)
95 1vyx_A ORF K3, K3RING; zinc-bi 91.0 0.2 7E-06 37.8 3.9 49 307-364 5-58 (60)
96 2ysj_A Tripartite motif-contai 89.6 0.076 2.6E-06 40.1 0.4 41 478-523 21-62 (63)
97 2ysl_A Tripartite motif-contai 89.2 0.12 4.1E-06 40.0 1.3 41 478-523 21-62 (73)
98 4ayc_A E3 ubiquitin-protein li 88.6 0.14 4.7E-06 45.4 1.4 37 478-519 54-90 (138)
99 2yur_A Retinoblastoma-binding 88.3 0.086 2.9E-06 41.3 -0.1 42 478-524 16-58 (74)
100 3lrq_A E3 ubiquitin-protein li 87.8 0.086 2.9E-06 44.0 -0.5 34 478-516 23-57 (100)
101 2d8t_A Dactylidin, ring finger 87.4 0.16 5.6E-06 39.3 1.0 39 478-523 16-54 (71)
102 2egp_A Tripartite motif-contai 87.1 0.16 5.5E-06 39.9 0.8 33 478-515 13-45 (79)
103 3ztg_A E3 ubiquitin-protein li 87.0 0.095 3.3E-06 42.7 -0.6 41 478-523 14-55 (92)
104 1e4u_A Transcriptional repress 86.8 0.15 5E-06 40.8 0.4 44 478-523 12-55 (78)
105 2ckl_A Polycomb group ring fin 86.1 0.19 6.4E-06 42.4 0.7 37 478-519 16-53 (108)
106 2y43_A E3 ubiquitin-protein li 86.0 0.18 6E-06 41.8 0.5 36 478-518 23-59 (99)
107 2ct2_A Tripartite motif protei 85.8 0.12 4.2E-06 41.5 -0.6 45 478-523 16-61 (88)
108 1iym_A EL5; ring-H2 finger, ub 85.8 0.18 6E-06 36.7 0.4 42 478-523 6-48 (55)
109 2ecj_A Tripartite motif-contai 85.0 0.2 6.9E-06 36.7 0.3 41 478-523 16-57 (58)
110 3ng2_A RNF4, snurf, ring finge 84.6 0.12 4E-06 39.8 -1.2 41 478-518 11-53 (71)
111 3fl2_A E3 ubiquitin-protein li 84.4 0.21 7.2E-06 43.2 0.3 40 478-523 53-92 (124)
112 2ecy_A TNF receptor-associated 84.3 0.22 7.4E-06 37.9 0.3 40 478-523 16-55 (66)
113 2l0b_A E3 ubiquitin-protein li 84.3 0.22 7.7E-06 40.6 0.4 42 478-523 41-82 (91)
114 2ect_A Ring finger protein 126 84.2 0.37 1.2E-05 37.8 1.6 42 478-523 16-57 (78)
115 2ckl_B Ubiquitin ligase protei 83.7 0.23 7.9E-06 45.2 0.2 33 478-515 55-88 (165)
116 2djb_A Polycomb group ring fin 83.3 0.17 5.7E-06 39.3 -0.8 39 478-523 16-55 (72)
117 2ecn_A Ring finger protein 141 83.0 0.32 1.1E-05 37.3 0.7 36 478-519 16-51 (70)
118 2kiz_A E3 ubiquitin-protein li 82.6 0.28 9.6E-06 37.5 0.3 43 478-524 15-57 (69)
119 3nw0_A Non-structural maintena 82.1 0.91 3.1E-05 44.1 3.8 51 308-366 180-230 (238)
120 3l11_A E3 ubiquitin-protein li 82.1 0.54 1.9E-05 39.9 1.9 40 478-523 16-55 (115)
121 1joc_A EEA1, early endosomal a 81.6 2.8 9.6E-05 36.4 6.4 35 307-341 68-103 (125)
122 1t1h_A Gspef-atpub14, armadill 81.4 0.39 1.3E-05 37.6 0.7 40 478-523 9-48 (78)
123 2ecw_A Tripartite motif-contai 81.2 0.25 8.7E-06 39.1 -0.5 41 478-523 20-64 (85)
124 2csy_A Zinc finger protein 183 81.1 0.25 8.7E-06 39.2 -0.5 36 478-518 16-51 (81)
125 1chc_A Equine herpes virus-1 r 81.0 0.37 1.3E-05 36.6 0.4 39 478-523 6-45 (68)
126 2ep4_A Ring finger protein 24; 80.6 0.45 1.5E-05 36.8 0.8 42 478-523 16-57 (74)
127 2xeu_A Ring finger protein 4; 80.5 0.22 7.6E-06 37.2 -1.0 44 478-523 4-49 (64)
128 3qt1_I DNA-directed RNA polyme 79.7 0.82 2.8E-05 40.3 2.3 35 392-437 22-56 (133)
129 2jrp_A Putative cytoplasmic pr 79.3 2.1 7.1E-05 34.3 4.3 28 479-514 33-63 (81)
130 2ea6_A Ring finger protein 4; 79.0 0.25 8.5E-06 37.5 -1.2 44 478-523 16-61 (69)
131 1vq8_Z 50S ribosomal protein L 78.7 1.3 4.4E-05 35.8 2.9 29 477-505 27-56 (83)
132 2ecv_A Tripartite motif-contai 78.7 0.28 9.7E-06 38.8 -1.0 33 478-515 20-52 (85)
133 1x4j_A Ring finger protein 38; 78.5 0.4 1.4E-05 37.3 -0.1 41 478-523 24-65 (75)
134 3hct_A TNF receptor-associated 77.5 0.27 9.2E-06 42.2 -1.5 40 478-523 19-58 (118)
135 2ecl_A Ring-box protein 2; RNF 77.4 0.72 2.5E-05 36.7 1.1 43 479-523 17-69 (81)
136 1jm7_A BRCA1, breast cancer ty 77.0 0.43 1.5E-05 40.1 -0.4 41 478-523 22-63 (112)
137 3j20_Y 30S ribosomal protein S 76.4 1.4 4.7E-05 32.0 2.3 28 477-504 19-47 (50)
138 2k4x_A 30S ribosomal protein S 76.1 0.84 2.9E-05 33.9 1.0 27 478-504 19-46 (55)
139 1jm7_B BARD1, BRCA1-associated 74.5 1.2 3.9E-05 38.0 1.7 32 478-514 23-55 (117)
140 1g25_A CDK-activating kinase a 74.5 0.64 2.2E-05 35.0 0.1 35 478-513 4-39 (65)
141 2ecm_A Ring finger and CHY zin 74.3 0.59 2E-05 33.7 -0.2 42 478-523 6-48 (55)
142 3vk6_A E3 ubiquitin-protein li 74.2 0.55 1.9E-05 39.1 -0.4 30 479-513 3-33 (101)
143 1z6u_A NP95-like ring finger p 73.1 0.78 2.7E-05 41.2 0.3 40 478-523 79-118 (150)
144 2jr6_A UPF0434 protein NMA0874 73.1 1.8 6E-05 33.6 2.2 27 478-504 9-36 (68)
145 3knv_A TNF receptor-associated 72.6 0.63 2.2E-05 41.4 -0.5 34 478-516 32-65 (141)
146 2jrp_A Putative cytoplasmic pr 72.4 2.2 7.6E-05 34.1 2.7 34 478-513 3-42 (81)
147 1pft_A TFIIB, PFTFIIBN; N-term 72.1 3.1 0.0001 29.8 3.2 27 478-504 6-34 (50)
148 1rmd_A RAG1; V(D)J recombinati 71.2 0.72 2.5E-05 39.2 -0.4 40 478-523 24-63 (116)
149 2ko5_A Ring finger protein Z; 70.9 0.62 2.1E-05 38.2 -0.8 50 304-365 24-73 (99)
150 1wfl_A Zinc finger protein 216 70.3 1.4 4.6E-05 34.7 1.0 29 478-510 26-54 (74)
151 1z60_A TFIIH basal transcripti 69.6 1.3 4.5E-05 33.3 0.8 23 427-449 30-52 (59)
152 2jne_A Hypothetical protein YF 69.4 3.2 0.00011 34.2 3.1 34 478-513 33-72 (101)
153 4a0k_B E3 ubiquitin-protein li 68.7 1 3.5E-05 38.8 0.0 32 490-523 74-105 (117)
154 1wfh_A Zinc finger (AN1-like) 68.0 1.6 5.5E-05 33.3 1.0 30 478-511 16-45 (64)
155 3dpl_R Ring-box protein 1; ubi 66.7 1.5 5.2E-05 36.9 0.7 31 491-523 64-94 (106)
156 3hcs_A TNF receptor-associated 66.4 0.72 2.4E-05 42.1 -1.5 40 478-523 19-58 (170)
157 1wg2_A Zinc finger (AN1-like) 63.4 1.9 6.5E-05 32.9 0.6 30 478-511 16-45 (64)
158 2fiy_A Protein FDHE homolog; F 63.0 3.4 0.00012 41.6 2.6 14 435-448 208-221 (309)
159 2d8v_A Zinc finger FYVE domain 62.1 5 0.00017 30.7 2.7 34 305-342 5-39 (67)
160 1wff_A Riken cDNA 2810002D23 p 60.9 3.2 0.00011 33.5 1.5 31 477-510 25-55 (85)
161 1v87_A Deltex protein 2; ring- 60.7 1.4 4.7E-05 37.1 -0.7 36 478-513 26-74 (114)
162 2y1n_A E3 ubiquitin-protein li 60.3 4.2 0.00014 42.2 2.8 33 477-514 332-364 (389)
163 1z60_A TFIIH basal transcripti 59.9 1.9 6.6E-05 32.4 0.1 39 478-519 16-55 (59)
164 1wfp_A Zinc finger (AN1-like) 59.7 3.2 0.00011 32.5 1.3 28 478-509 26-53 (74)
165 1weo_A Cellulose synthase, cat 54.1 5 0.00017 32.5 1.6 39 423-488 31-69 (93)
166 4ic3_A E3 ubiquitin-protein li 54.0 10 0.00035 29.2 3.4 30 478-512 25-55 (74)
167 3v43_A Histone acetyltransfera 53.6 43 0.0015 28.0 7.6 48 308-356 5-60 (112)
168 3sbc_A Peroxiredoxin TSA1; alp 53.2 12 0.00042 35.5 4.5 48 176-226 140-187 (216)
169 2js4_A UPF0434 protein BB2007; 51.8 7.9 0.00027 30.0 2.4 26 478-503 9-35 (70)
170 2hf1_A Tetraacyldisaccharide-1 51.7 7.3 0.00025 30.1 2.2 26 478-503 9-35 (68)
171 2pk7_A Uncharacterized protein 51.2 7.7 0.00026 30.0 2.2 26 478-503 9-35 (69)
172 3htk_C E3 SUMO-protein ligase 50.2 4.8 0.00016 39.5 1.1 41 478-523 182-223 (267)
173 2xzm_9 RPS31E; ribosome, trans 48.9 8.5 0.00029 35.9 2.5 28 478-506 114-143 (189)
174 3lqh_A Histone-lysine N-methyl 46.6 21 0.00073 32.9 4.9 71 309-382 3-82 (183)
175 3h0g_I DNA-directed RNA polyme 45.9 10 0.00035 32.2 2.4 27 478-504 5-36 (113)
176 2c2l_A CHIP, carboxy terminus 45.8 4.3 0.00015 39.4 -0.0 40 478-523 209-248 (281)
177 3u5c_f 40S ribosomal protein S 45.2 8.7 0.0003 34.4 1.9 30 478-507 119-151 (152)
178 1twf_I B12.6, DNA-directed RNA 45.2 11 0.00037 32.5 2.5 28 477-504 4-36 (122)
179 2jny_A Uncharacterized BCR; st 43.2 12 0.00041 28.8 2.2 26 478-503 11-37 (67)
180 2byk_A Chrac-16; nucleosome sl 43.2 5 0.00017 35.6 0.0 9 376-384 49-57 (140)
181 2lbm_A Transcriptional regulat 43.1 59 0.002 28.7 7.0 50 307-362 62-117 (142)
182 2k5c_A Uncharacterized protein 42.3 5.5 0.00019 31.7 0.1 19 353-373 10-29 (95)
183 3qt1_I DNA-directed RNA polyme 42.2 8.5 0.00029 33.8 1.3 29 476-504 23-56 (133)
184 1wii_A Hypothetical UPF0222 pr 41.4 11 0.00038 30.4 1.8 27 478-504 24-57 (85)
185 3tue_A Tryparedoxin peroxidase 40.7 36 0.0012 32.3 5.6 63 176-255 144-206 (219)
186 1rw3_A POL polyprotein; RNA an 40.5 13 0.00044 39.2 2.7 73 154-238 344-422 (455)
187 1q0v_A Hydrophilic protein; ha 39.9 75 0.0025 25.2 6.3 16 39-54 11-26 (81)
188 3u5c_f 40S ribosomal protein S 39.2 15 0.00052 32.8 2.5 34 394-440 118-151 (152)
189 2kpi_A Uncharacterized protein 38.5 19 0.00065 26.5 2.5 24 478-503 11-37 (56)
190 3nyb_B Protein AIR2; polya RNA 36.7 46 0.0016 26.5 4.8 60 435-525 5-66 (83)
191 1x4w_A Hypothetical protein FL 36.7 5.3 0.00018 30.7 -0.8 31 478-509 16-46 (67)
192 2f9y_B Acetyl-coenzyme A carbo 36.5 6.5 0.00022 39.5 -0.4 31 474-504 21-53 (304)
193 1k81_A EIF-2-beta, probable tr 36.5 21 0.00072 23.8 2.3 25 479-503 2-30 (36)
194 2yu4_A E3 SUMO-protein ligase 36.1 5.8 0.0002 32.3 -0.7 41 478-523 8-53 (94)
195 4fp9_B Mterf domain-containing 35.8 7.7 0.00026 39.5 0.0 19 545-563 317-335 (335)
196 1zbd_B Rabphilin-3A; G protein 35.2 15 0.00051 32.2 1.7 33 307-339 54-88 (134)
197 3m7n_A Putative uncharacterize 35.1 16 0.00056 33.4 2.1 24 478-503 141-165 (179)
198 3h0g_I DNA-directed RNA polyme 34.7 22 0.00074 30.1 2.7 33 394-437 4-36 (113)
199 1twf_L ABC10-alpha, DNA-direct 34.3 10 0.00035 29.4 0.5 25 477-502 28-53 (70)
200 2lw9_A Unconventionnal myosin- 34.0 60 0.002 23.1 4.3 17 87-103 4-20 (51)
201 2akl_A PHNA-like protein PA012 33.8 16 0.00055 31.7 1.6 26 478-504 28-54 (138)
202 1uwz_A Cytidine deaminase; CDD 32.4 63 0.0022 28.1 5.4 57 176-236 22-80 (136)
203 2hu9_A MERP, mercuric transpor 31.8 26 0.0009 30.5 2.7 43 353-407 3-48 (130)
204 1dl6_A Transcription factor II 31.7 26 0.00089 25.9 2.3 25 478-502 12-38 (58)
205 3t6p_A Baculoviral IAP repeat- 31.2 35 0.0012 34.7 4.0 30 478-512 296-326 (345)
206 2kre_A Ubiquitin conjugation f 30.8 13 0.00045 30.6 0.6 39 478-523 30-68 (100)
207 1weo_A Cellulose synthase, cat 30.2 35 0.0012 27.6 3.0 35 477-511 16-52 (93)
208 2yho_A E3 ubiquitin-protein li 29.8 41 0.0014 26.2 3.4 31 478-513 19-50 (79)
209 1dvp_A HRS, hepatocyte growth 29.7 20 0.0007 33.8 1.9 29 478-508 162-191 (220)
210 3i2d_A E3 SUMO-protein ligase 29.6 50 0.0017 33.8 4.8 57 306-368 247-303 (371)
211 3ugs_B Undecaprenyl pyrophosph 29.3 1.3E+02 0.0045 28.5 7.4 71 178-260 8-78 (225)
212 3a1b_A DNA (cytosine-5)-methyl 29.1 24 0.00083 31.8 2.1 33 307-342 78-112 (159)
213 1twf_I B12.6, DNA-directed RNA 28.4 24 0.00082 30.3 1.9 34 394-438 4-37 (122)
214 1wfe_A Riken cDNA 2310008M20 p 27.2 39 0.0013 27.2 2.8 33 394-444 25-57 (86)
215 1x4v_A Hypothetical protein LO 27.1 26 0.00089 26.5 1.6 33 394-444 12-44 (63)
216 2pv0_B DNA (cytosine-5)-methyl 27.1 27 0.00093 36.0 2.3 33 307-342 92-126 (386)
217 2yw8_A RUN and FYVE domain-con 26.5 51 0.0017 25.9 3.4 37 391-444 16-52 (82)
218 3g06_A SSPH2 (leucine-rich rep 26.4 42 0.0014 36.8 3.9 49 35-105 483-531 (622)
219 1joc_A EEA1, early endosomal a 26.0 42 0.0014 28.8 3.0 35 393-444 68-102 (125)
220 4h8e_A Undecaprenyl pyrophosph 25.8 40 0.0014 32.8 3.1 74 175-260 23-96 (256)
221 1xcc_A 1-Cys peroxiredoxin; un 25.6 79 0.0027 29.4 5.2 43 180-225 129-171 (220)
222 1x4u_A Zinc finger, FYVE domai 24.6 56 0.0019 25.8 3.4 19 425-443 28-46 (84)
223 1z2q_A LM5-1; membrane protein 24.6 60 0.0021 25.6 3.5 20 425-444 35-54 (84)
224 4fo9_A E3 SUMO-protein ligase 24.5 72 0.0024 32.6 4.9 56 307-368 214-269 (360)
225 3a2v_A Probable peroxiredoxin; 24.4 88 0.003 30.0 5.4 45 179-226 124-168 (249)
226 2o35_A Hypothetical protein DU 24.2 32 0.0011 28.4 1.8 17 332-348 42-58 (105)
227 2v2g_A Peroxiredoxin 6; oxidor 24.2 86 0.0029 29.6 5.2 43 180-225 128-170 (233)
228 1gh9_A 8.3 kDa protein (gene M 23.9 38 0.0013 26.3 2.1 24 478-502 5-28 (71)
229 3fyb_A Protein of unknown func 23.7 33 0.0011 28.2 1.8 17 332-348 41-57 (104)
230 2fr5_A Cytidine deaminase; tet 23.3 93 0.0032 27.4 4.9 57 176-236 34-92 (146)
231 3t7l_A Zinc finger FYVE domain 22.9 52 0.0018 26.5 2.8 35 307-341 19-54 (90)
232 1prx_A HORF6; peroxiredoxin, h 22.6 85 0.0029 29.3 4.8 43 180-225 132-174 (224)
233 2zet_C Melanophilin; complex, 22.5 40 0.0014 30.2 2.3 32 307-338 67-100 (153)
234 2gmg_A Hypothetical protein PF 22.2 35 0.0012 28.6 1.6 14 361-374 23-36 (105)
235 1z2q_A LM5-1; membrane protein 22.1 53 0.0018 26.0 2.7 36 305-340 18-54 (84)
236 1fre_A Nuclear factor XNF7; zi 21.9 64 0.0022 21.4 2.8 27 424-450 11-38 (42)
237 2f9i_B Acetyl-coenzyme A carbo 21.8 15 0.00053 36.4 -0.7 32 473-504 26-59 (285)
238 1r5t_A Cytidine deaminase; zin 21.7 99 0.0034 27.1 4.7 57 176-236 30-89 (142)
239 1nui_A DNA primase/helicase; z 21.3 44 0.0015 32.0 2.5 22 478-502 15-41 (255)
240 2z3g_A Blasticidin-S deaminase 21.1 1.2E+02 0.0041 26.0 5.0 57 176-236 25-81 (130)
241 1wfk_A Zinc finger, FYVE domai 21.0 51 0.0018 26.4 2.4 36 305-340 6-42 (88)
242 2k16_A Transcription initiatio 21.0 57 0.002 25.0 2.7 34 306-339 16-49 (75)
243 2a20_A Regulating synaptic mem 20.2 33 0.0011 25.6 0.9 36 478-514 10-45 (62)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.4e-24 Score=195.92 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=120.8
Q ss_pred eEEEEEccceeecccCCCCCCCceEEEEEEeCC-CCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecC
Q 008441 156 FFKVYSKGLVIEELVNGERVSLSAIGVAICDQM-DNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFID 234 (565)
Q Consensus 156 ~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~-~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~D 234 (565)
.++|||||++ .+ |||++|+|++|.++. |.++...+.++ +.. +||.|||+|++.||+.|.++|+++|.|++|
T Consensus 3 ~~~iy~DGs~-~~-----~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~-tn~~aEl~A~~~aL~~a~~~~~~~v~i~tD 74 (141)
T 3hst_B 3 KVVIEADGGS-RG-----NPGPAGYGAVVWTADHSTVLAESKQAI-GRA-TNNVAEYRGLIAGLDDAVKLGATEAAVLMD 74 (141)
T ss_dssp EEEEEEEEEE-SS-----SSEEEEEEEEEEETTSCSEEEEEEEEE-EEE-CHHHHHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred EEEEEEecCC-CC-----CCCCcEEEEEEEeCCCCcEEEeeeccC-CCC-chHHHHHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4899999999 45 999999999999986 56677788887 644 458999999999999999999999999999
Q ss_pred CccchhhccCccCCcchhhHHHHHHHHHHhhhccccccccccccchHHHHHHHHHhhhccc
Q 008441 235 CFPLFQFVTGRWPAKQRKISVLVDQVSLLEKRFSYFKPRHVARNDMKYVYELARAAINSQM 295 (565)
Q Consensus 235 S~lv~~qv~G~w~~k~~~l~~l~~~v~~Ll~~F~~~~~~~V~R~~n~~Ad~LA~eal~sqi 295 (565)
|++|++++++.|+++++.+..++.++..|+++|..+.+.||+|..|+.||+||+.++....
T Consensus 75 S~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~~ 135 (141)
T 3hst_B 75 SKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAAA 135 (141)
T ss_dssp CHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999987653
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.90 E-value=4.4e-24 Score=193.55 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=121.2
Q ss_pred eEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCC----eEEe
Q 008441 156 FFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELD----RVRV 231 (565)
Q Consensus 156 ~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~----~v~v 231 (565)
.++|||||++ .+ |||++|+|++|.++.|..+...+.++ +.. +||.|||+|++.||+.|.++|++ +|.|
T Consensus 3 ~~~iy~DGs~-~~-----n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~-tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i 74 (140)
T 3u3g_D 3 KIIIYTDGGA-RG-----NPGPAGIGVVITDEKGNTLHESSAYI-GET-TNNVAEYEALIRALEDLQMFGDKLVDMEVEV 74 (140)
T ss_dssp EEEEEEEEEE-SS-----TTEEEEEEEEEECTTSCEEEEEEEEE-EEE-CHHHHHHHHHHHHHHHHGGGGGGGTTCEEEE
T ss_pred eEEEEEecCC-CC-----CCCCcEEEEEEEeCCCCEEEEEEeeC-CCC-chHHHHHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 4899999999 44 99999999999998888888888888 655 55999999999999999999999 9999
Q ss_pred ecCCccchhhccCccCCcchhhHHHHHHHHHH-hhhccccccccccccchHHHHHHHHHhhhcc
Q 008441 232 FIDCFPLFQFVTGRWPAKQRKISVLVDQVSLL-EKRFSYFKPRHVARNDMKYVYELARAAINSQ 294 (565)
Q Consensus 232 ~~DS~lv~~qv~G~w~~k~~~l~~l~~~v~~L-l~~F~~~~~~~V~R~~n~~Ad~LA~eal~sq 294 (565)
++||++|++++++.|+++++.+..++.++..+ +++|..+.+.||+|..|+.||+||+.++...
T Consensus 75 ~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 75 RMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDKA 138 (140)
T ss_dssp EESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 9999999999999999999999999988753
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.90 E-value=1.1e-23 Score=194.10 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=118.1
Q ss_pred eEEEEEccceeecccCCCCCCCceE-EEEEEeCCCCeEEEeeeeccc---cCCChHHHHHHHHHHHHHHHHhcCCCeEEe
Q 008441 156 FFKVYSKGLVIEELVNGERVSLSAI-GVAICDQMDNLIFELKKPLIK---SGLNKSAAETKALIEGLNAALSMELDRVRV 231 (565)
Q Consensus 156 ~~~vyfdGa~~~~~~~~~npg~ag~-Gv~i~~~~~~~~~~~~~~~~~---~~tn~n~AEy~Ali~gL~~al~l~~~~v~v 231 (565)
||+|||||+++.+ |||++|+ |++|.+ .|..+...+..+ + ..++||.|||+|++.||+.|.++|+++|.|
T Consensus 1 m~~iy~DGs~~~~-----n~g~~G~~G~vi~~-~g~~~~~~~~~~-~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i 73 (149)
T 2ehg_A 1 MIIGYFDGLCEPK-----NPGGIATFGFVIYL-DNRKIEGYGLAE-KPFSINSTNNVAEYSGLICLMETMLRLGISSPII 73 (149)
T ss_dssp CCEEEEEEEEESS-----SSSSEEEEEEEEEC-SSCEEEEEEECS-CTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred CEEEEEeeccCCC-----CCChheEEEEEEEE-CCEEEEEecccc-CCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999999525 9999997 999998 677766666665 4 245669999999999999999999999999
Q ss_pred ecCCccchhhccCccCCcchhhHHHHHHHHHHhhhccccccccccccchHHHHHHHHHhhhccc
Q 008441 232 FIDCFPLFQFVTGRWPAKQRKISVLVDQVSLLEKRFSYFKPRHVARNDMKYVYELARAAINSQM 295 (565)
Q Consensus 232 ~~DS~lv~~qv~G~w~~k~~~l~~l~~~v~~Ll~~F~~~~~~~V~R~~n~~Ad~LA~eal~sqi 295 (565)
++||++|++++++.|+.+++.++.|++++..++++| .+.+.||+|..|+.||+||+.++....
T Consensus 74 ~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~ 136 (149)
T 2ehg_A 74 KGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVR 136 (149)
T ss_dssp EESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred EeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999 599999999999999999999987654
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.77 E-value=1.6e-18 Score=160.51 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=104.5
Q ss_pred CceEEEEEccceeecccCCCCCCC---ceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEE
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSL---SAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVR 230 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~---ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~ 230 (565)
...++|||||+++ + ||++ +|+||++.+..+. .++.++.+. ++||.||++|++.||+.|.+.+.++|.
T Consensus 5 ~~~~~iytDGs~~-~-----n~~~~~~aG~Gvv~~~~~~~---~~~~~l~~~-~tn~~aEl~A~~~aL~~~~~~~~~~v~ 74 (154)
T 2qkb_A 5 GDFVVVYTDGCCS-S-----NGRRRPRAGIGVYWGPGHPL---NVGIRLPGR-QTNQRAEIHAACKAIEQAKTQNINKLV 74 (154)
T ss_dssp TTEEEEEEEEEEE-T-----TTSSSCEEEEEEECSTTCTT---CEEEECCSS-CCHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEccCcC-C-----CCCCCCcEEEEEEEECCCce---eEEeecCCC-CchHHHHHHHHHHHHHHHHhCCCceEE
Confidence 5689999999994 4 7764 8999998764332 245566343 556999999999999999999999999
Q ss_pred eecCCccchhhccC--------ccCCcc---hhhHHHHHHHHHHhhhcccccccccccc----chHHHHHHHHHhhhc
Q 008441 231 VFIDCFPLFQFVTG--------RWPAKQ---RKISVLVDQVSLLEKRFSYFKPRHVARN----DMKYVYELARAAINS 293 (565)
Q Consensus 231 v~~DS~lv~~qv~G--------~w~~k~---~~l~~l~~~v~~Ll~~F~~~~~~~V~R~----~n~~Ad~LA~eal~s 293 (565)
|++||++|+++|.+ .|+++. .....|+.++..+++.|. +.+.||++. .|+.||+||+.++..
T Consensus 75 i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 75 LYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp EEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred EEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 99999999999987 455443 245678899999988886 899999985 599999999998763
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.76 E-value=1.5e-18 Score=159.56 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=103.6
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeee-ec--c-ccCCChHHHHHHHHHHHHHHHHhcCCCeE
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKK-PL--I-KSGLNKSAAETKALIEGLNAALSMELDRV 229 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~-~~--~-~~~tn~n~AEy~Ali~gL~~al~l~~~~v 229 (565)
...++|||||++ ++|++|+|++|.+ .|. +.+++. .+ . +..++||.|||+|+|.||+.|++.|. +|
T Consensus 4 ~~~i~iytDGs~--------~~g~~G~G~vi~~-~g~-~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v 72 (147)
T 2kq2_A 4 RTEYDVYTDGSY--------VNGQYAWAYAFVK-DGK-VHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KI 72 (147)
T ss_dssp TSCCEEECCCCC--------BTTBCEEEEEEEE-TTE-EEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CC
T ss_pred CCeEEEEECCCC--------CCCCcEEEEEEEE-CCE-EEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eE
Confidence 456889999999 4489999999988 343 445554 22 1 21234589999999999999999998 99
Q ss_pred EeecCCccchhhccCccCCcchhhHHHHHHHHHHhhhcccccccccc----ccchHHHHHHHHHhhhccc
Q 008441 230 RVFIDCFPLFQFVTGRWPAKQRKISVLVDQVSLLEKRFSYFKPRHVA----RNDMKYVYELARAAINSQM 295 (565)
Q Consensus 230 ~v~~DS~lv~~qv~G~w~~k~~~l~~l~~~v~~Ll~~F~~~~~~~V~----R~~n~~Ad~LA~eal~sqi 295 (565)
.|++||+.|.+++.|.|+++++....+.+.++.|.+ .+.+.||+ +..|+.||+||+.++....
T Consensus 73 ~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 73 RILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp CBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred EEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 999999999999999999999888888777777755 67778887 5679999999999987543
No 6
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.74 E-value=2.7e-18 Score=157.44 Aligned_cols=127 Identities=19% Similarity=0.159 Sum_probs=102.9
Q ss_pred ceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecC
Q 008441 155 YFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFID 234 (565)
Q Consensus 155 ~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~D 234 (565)
..++|||||++ .+ |||++|+|++|.+. +.+..++..+ +. ++||.||++|++.||+.+.+ .++|.|++|
T Consensus 3 ~~i~iytDGs~-~~-----n~g~~g~G~v~~~~--~~~~~~~~~~-~~-~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tD 70 (146)
T 3h08_A 3 KTITIYTDGAA-SG-----NPGKGGWGALLMYG--SSRKEISGYD-PA-TTNNRMELMAAIKGLEALKE--PARVQLYSD 70 (146)
T ss_dssp CEEEEEEEEEE-SS-----TTEEEEEEEEEEET--TEEEEEEEEE-EE-ECHHHHHHHHHHHHHHTCSS--CCEEEEEES
T ss_pred ceEEEEEecCC-CC-----CCCceEEEEEEEEC--CeeEEeecCC-CC-CcHHHHHHHHHHHHHHhcCc--cCcEEEEeC
Confidence 45899999999 44 99999999999875 3556777777 44 45589999999999998876 589999999
Q ss_pred CccchhhccCcc---------CCcc---hhhHHHHHHHHHHhhhcccccccccc----ccchHHHHHHHHHhhhcc
Q 008441 235 CFPLFQFVTGRW---------PAKQ---RKISVLVDQVSLLEKRFSYFKPRHVA----RNDMKYVYELARAAINSQ 294 (565)
Q Consensus 235 S~lv~~qv~G~w---------~~k~---~~l~~l~~~v~~Ll~~F~~~~~~~V~----R~~n~~Ad~LA~eal~sq 294 (565)
|++|++++.+.| +... ...+.|+.++..++++|. +.+.||+ +..|+.||+||+.++..+
T Consensus 71 S~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~-v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 71 SAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHR-VTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp CHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSE-EEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCc-eEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 999999999854 2222 244678888888888875 7888998 999999999999988653
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.70 E-value=2.6e-17 Score=153.00 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=100.9
Q ss_pred ceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecC
Q 008441 155 YFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFID 234 (565)
Q Consensus 155 ~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~D 234 (565)
..++|||||++ .+ |||++|+|++|.+. | .+..++..+ +. ++||.||+.|+|.||+.+.+. ++|.|++|
T Consensus 5 ~~i~iytDGs~-~~-----n~g~~G~G~v~~~~-~-~~~~~~~~~-~~-~tn~~aEl~A~~~AL~~~~~~--~~v~I~tD 72 (158)
T 2e4l_A 5 KLIHIFTDGSC-LG-----NPGPGGYGIVMNYK-G-HTKEMSDGF-SL-TTNNRMELLAPIVALEALKEP--CKIILTSD 72 (158)
T ss_dssp CEEEEEEEEEE-SS-----SSEEEEEEEEEEET-T-EEEEEEEEE-EE-ECHHHHHHHHHHHHHHTCSSC--CEEEEEEC
T ss_pred CeEEEEEcccc-cC-----CCCcEEEEEEEEEC-C-EEEEEecCc-CC-CccHHHHHHHHHHHHHHhccC--CeEEEEeC
Confidence 35899999999 44 99999999999874 3 455666666 44 455899999999999987543 89999999
Q ss_pred CccchhhccC--------ccCCcc---hhhHHHHHHHHHHhhhcccccccccc----ccchHHHHHHHHHhhhc
Q 008441 235 CFPLFQFVTG--------RWPAKQ---RKISVLVDQVSLLEKRFSYFKPRHVA----RNDMKYVYELARAAINS 293 (565)
Q Consensus 235 S~lv~~qv~G--------~w~~k~---~~l~~l~~~v~~Ll~~F~~~~~~~V~----R~~n~~Ad~LA~eal~s 293 (565)
|++|++++.+ .|.... .+-..|...+..+++.+ .+.+.||+ +..|+.||+||+.++..
T Consensus 73 S~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 73 SQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp CHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTS-EEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccC-cEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999999998 675432 12346777787787775 57888998 78999999999999876
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.70 E-value=2.4e-17 Score=152.76 Aligned_cols=126 Identities=17% Similarity=0.083 Sum_probs=100.3
Q ss_pred eEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCC
Q 008441 156 FFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFIDC 235 (565)
Q Consensus 156 ~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS 235 (565)
.++|||||++ .+ |||++|+|++|.+.. ....++..+ +.. +||.||+.|++.||+.+.+. .+|.|++||
T Consensus 4 ~~~iytDGs~-~~-----n~~~~G~G~v~~~~~--~~~~~~~~~-~~~-tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS 71 (155)
T 1jl1_A 4 QVEIFTAGSA-LG-----NPGPGGYGAILRYRG--REKTFSAGY-TRT-TNNRMELMAAIVALEALKEH--AEVILSTDS 71 (155)
T ss_dssp CEEEEEEEEE-SS-----TTEEEEEEEEEEETT--EEEEEEEEE-EEE-CHHHHHHHHHHHHHHTCCSC--CEEEEEECC
T ss_pred eEEEEEcccc-CC-----CCCceEEEEEEEECC--eEEEEecCC-CCC-cHHHHHHHHHHHHHHHhCcC--CcEEEEeCH
Confidence 4889999999 44 999999999998753 334555665 444 55899999999999988764 899999999
Q ss_pred ccchhhccC--------ccCCcc--h-hhHHHHHHHHHHhhhcccccccccc----ccchHHHHHHHHHhhhcc
Q 008441 236 FPLFQFVTG--------RWPAKQ--R-KISVLVDQVSLLEKRFSYFKPRHVA----RNDMKYVYELARAAINSQ 294 (565)
Q Consensus 236 ~lv~~qv~G--------~w~~k~--~-~l~~l~~~v~~Ll~~F~~~~~~~V~----R~~n~~Ad~LA~eal~sq 294 (565)
++|++++.+ .|.+.. | +-..|+..+..+++.+ .+.+.||+ +..|+.||+||+.++...
T Consensus 72 ~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 144 (155)
T 1jl1_A 72 QYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNP 144 (155)
T ss_dssp HHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC-EEEEEECCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccC-ceEEEEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999998 554432 1 2256778888887765 67888998 889999999999998753
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.69 E-value=1.4e-16 Score=148.95 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=98.1
Q ss_pred CceEEEEEccceeecccCCCCCCC-----ceEEEEEEeCCCC--eEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCC
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSL-----SAIGVAICDQMDN--LIFELKKPLIKSGLNKSAAETKALIEGLNAALSMEL 226 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~-----ag~Gv~i~~~~~~--~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~ 226 (565)
...+.||+||+| .| |||| +|+||+|...... +......+. +..|+ |.||++||+.+|+.|+..+
T Consensus 5 ~~evviYTDGsc-~g-----Npgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~t-nn~te-~~Aei~Al~~al~~al~~~- 75 (165)
T 2lsn_A 5 QYEGVFYTDGSA-IK-----SPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPL-GNHTA-QMAEIAAVEFACKKALKIP- 75 (165)
T ss_dssp CCSEEEEEEEEE-EE-----CSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEE-SSCCH-HHHHHHHHHHHHHHHHHSS-
T ss_pred CceEEEEEcCCC-CC-----CCCCCCCCcEEEEEEEEECCCccEEeccccCCc-hHHHH-HHHHHHHHHHHHHHHhcCC-
Confidence 556889999999 44 9998 9999999754332 233333333 44555 8999999999999999887
Q ss_pred CeEEeecCCccchhhccC--------ccCCcc--h-hhHHHHHHHHHHhhhcccccccccc----------ccchHHHHH
Q 008441 227 DRVRVFIDCFPLFQFVTG--------RWPAKQ--R-KISVLVDQVSLLEKRFSYFKPRHVA----------RNDMKYVYE 285 (565)
Q Consensus 227 ~~v~v~~DS~lv~~qv~G--------~w~~k~--~-~l~~l~~~v~~Ll~~F~~~~~~~V~----------R~~n~~Ad~ 285 (565)
.+|.|+|||++|++.|++ .|++.. | +-+.|..++..++..+..+.+.||+ +..|+.||+
T Consensus 76 ~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~ 155 (165)
T 2lsn_A 76 GPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADK 155 (165)
T ss_dssp SCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHH
Confidence 479999999999999975 333321 1 2246777888888888888999997 445999999
Q ss_pred HHHHhhh
Q 008441 286 LARAAIN 292 (565)
Q Consensus 286 LA~eal~ 292 (565)
||+++..
T Consensus 156 LA~~gA~ 162 (165)
T 2lsn_A 156 LATQGSY 162 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9998753
No 10
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.69 E-value=2.7e-17 Score=151.59 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=94.0
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeec
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFI 233 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~ 233 (565)
.++++||+||++ .+ |||++|+|++|.+..+ . .+ .+ + .++||.||++|+|.||+.+ + .+|.|++
T Consensus 10 ~~~~~iytDGs~-~~-----n~g~~g~G~v~~~~~~-~--~~--~~-~-~~Tnn~aEl~A~i~AL~~~---~-~~v~i~t 72 (150)
T 3qio_A 10 VGAETFYVDGAA-NR-----ETKLGKAGYVTNRGRQ-K--VV--TL-T-DTTNQKTELQAIYLALQDS---G-LEVNIVT 72 (150)
T ss_dssp TTCEEEEEEEEE-CT-----TTCCEEEEEEETTSCE-E--EE--EE-S-SCCHHHHHHHHHHHHHHHS---C-SEEEEEE
T ss_pred CCCEEEEEccCC-CC-----CCCCeEEEEEEEcCCE-E--EE--eC-C-CCCHHHHHHHHHHHHHHhC---C-CcEEEEe
Confidence 567999999999 44 9999999999875421 1 22 23 3 4555999999999999873 3 8999999
Q ss_pred CCccchhhccC--------ccCCcch---hhHHHHHHHHHHhhhccccccccccccc----hHHHHHHHHHhhhc
Q 008441 234 DCFPLFQFVTG--------RWPAKQR---KISVLVDQVSLLEKRFSYFKPRHVARND----MKYVYELARAAINS 293 (565)
Q Consensus 234 DS~lv~~qv~G--------~w~~k~~---~l~~l~~~v~~Ll~~F~~~~~~~V~R~~----n~~Ad~LA~eal~s 293 (565)
||++|++.+.+ .|++... +-+.|..++..++.++..+.+.||++.. |+.||+||++++..
T Consensus 73 DS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 73 DSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp SCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred CcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99999998875 1332211 3456777777666788899999999997 99999999988765
No 11
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.68 E-value=2.6e-17 Score=154.29 Aligned_cols=127 Identities=19% Similarity=0.112 Sum_probs=100.0
Q ss_pred ceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecC
Q 008441 155 YFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFID 234 (565)
Q Consensus 155 ~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~D 234 (565)
..++|||||++ .+ |||++|+|++|.+..+ ...++..+ +. ++||.|||+|+|.||+.+.+. .+|.|++|
T Consensus 7 ~~i~iytDGs~-~~-----n~g~~G~G~v~~~~~~--~~~~~~~~-~~-~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tD 74 (166)
T 1ril_A 7 KRVALFTDGAC-LG-----NPGPGGWAALLRFHAH--EKLLSGGE-AC-TTNNRMELKAAIEGLKALKEP--CEVDLYTD 74 (166)
T ss_dssp CCCCEEEEEEE-SS-----TTEEEEEEEEECBTTB--CCEECCEE-EE-ECHHHHHHHHHHHHHHSCCSC--CEEEEECC
T ss_pred ccEEEEECccc-cC-----CCCCEEEEEEEEECCE--EEEEecCC-CC-CcHHHHHHHHHHHHHHHhccC--CeEEEEeC
Confidence 45889999999 44 9999999999987532 33455555 44 455899999999999987665 58999999
Q ss_pred CccchhhccC---------ccCCcch---hhHHHHHHHHHHhhhcccccccccc----ccchHHHHHHHHHhhhcc
Q 008441 235 CFPLFQFVTG---------RWPAKQR---KISVLVDQVSLLEKRFSYFKPRHVA----RNDMKYVYELARAAINSQ 294 (565)
Q Consensus 235 S~lv~~qv~G---------~w~~k~~---~l~~l~~~v~~Ll~~F~~~~~~~V~----R~~n~~Ad~LA~eal~sq 294 (565)
|++|+++|.+ .|+.... +-..|+.++..+++.+ .+.+.||+ +..|+.||+||+.++...
T Consensus 75 S~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 75 SHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp CHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 9999999999 3554322 2346788888888876 67888898 889999999999998754
No 12
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.67 E-value=4.5e-16 Score=145.52 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=94.1
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeec
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFI 233 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~ 233 (565)
+..+.||+||++ .+ |||++|+|++|+.. |.. .+.+ .+ ...++||.||++|+|.||+.+ ..++|.|++
T Consensus 21 ~~~i~iytDGs~-~~-----npG~~g~G~vi~~~-~~~-~~~~-~~-~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~t 87 (165)
T 3p1g_A 21 DADYTWYTDGSS-FL-----QEGQRRAGAAVTTE-TEV-IWAR-AL-PAGTSAQRAELIALTQALKMA---EGKKLNVYT 87 (165)
T ss_dssp TCSEEEEEEEEE-EE-----ETTEEEEEEEEECS-SCE-EEEE-EE-CTTCCHHHHHHHHHHHHHHHT---BTSEEEEEE
T ss_pred CCCEEEEEEccc-CC-----CCCceEEEEEEEEC-CEE-EEEe-cC-CCCCcHHHHHHHHHHHHHHHc---cCceEEEEE
Confidence 335999999999 44 99999999999874 443 3444 33 234566999999999999987 478999999
Q ss_pred CCccchhhccCccCCcc--h-hhHHHHHHHHHHhhhccccccccccccc---------hHHHHHHHHHhhhcc
Q 008441 234 DCFPLFQFVTGRWPAKQ--R-KISVLVDQVSLLEKRFSYFKPRHVARND---------MKYVYELARAAINSQ 294 (565)
Q Consensus 234 DS~lv~~qv~G~w~~k~--~-~l~~l~~~v~~Ll~~F~~~~~~~V~R~~---------n~~Ad~LA~eal~sq 294 (565)
||++|++.+ |.... + +-..|+.++...+.++..+.+.||++.. |+.||+||+.+....
T Consensus 88 DS~~vi~~i---w~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 88 DSRYAFATA---HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp CCHHHHHHH---HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhh---hcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 999999977 52211 1 1234455554444567889999999876 899999999988754
No 13
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.66 E-value=1.3e-17 Score=128.77 Aligned_cols=51 Identities=37% Similarity=0.922 Sum_probs=46.6
Q ss_pred CccccCCCCceeEecCCcceEEee---cCccccccccccccCCCCC-cCCCCCCC
Q 008441 476 LWRQCVKCNHLIELAEGCFHMTCR---CGHEFCYNCGAEWKNKKAT-CSCPLWDE 526 (565)
Q Consensus 476 ~~k~CPkC~~~IEK~~GCnHMtC~---Cg~~FCw~C~~~~~~~~~~-c~C~~~~~ 526 (565)
.+|+||+|+++|||++|||||+|+ |+++|||+|+++|..|+.. +.|++|++
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~~ 59 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCccc
Confidence 469999999999999999999995 9999999999999988755 69999875
No 14
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.66 E-value=1.1e-16 Score=143.52 Aligned_cols=103 Identities=11% Similarity=0.094 Sum_probs=79.1
Q ss_pred eEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCC
Q 008441 156 FFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFIDC 235 (565)
Q Consensus 156 ~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS 235 (565)
+..||||||+ +| |||++|+|+||.+ .|.++ ....++ +. ++||.|||+|+|.||+.+.+++.+ |.|++||
T Consensus 5 ~~~iytDGac-~G-----NPGp~G~ggV~~~-~g~~~-~~~g~~-~~-tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDS 73 (134)
T 4htu_A 5 WESLSVDVGS-QG-----NPGIVEYKGVDTK-TGEVL-FEREPI-PI-GTNNMGEFLAIVHGLRYLKERNSR-KPIYSNS 73 (134)
T ss_dssp SSSEEEEEEE-ET-----TTEEEEEEEEETT-TCCEE-EEEEEE-EE-ECHHHHHHHHHHHHHHHHHHTTCC-CCEEESC
T ss_pred ceEEEEeecc-CC-----CCCCeEEEEEEEE-CCEEE-EEecCC-CC-CchHHHHHHHHHHHHHHHHhCCCC-EEEEcch
Confidence 3569999999 55 9999999888766 45544 444556 54 455999999999999999999876 8999999
Q ss_pred ccchhhccC-ccCC------cchhhHHHHHHHHHHhhhccc
Q 008441 236 FPLFQFVTG-RWPA------KQRKISVLVDQVSLLEKRFSY 269 (565)
Q Consensus 236 ~lv~~qv~G-~w~~------k~~~l~~l~~~v~~Ll~~F~~ 269 (565)
++|+++|.+ .|++ ++..|-.+++.+..+++.+..
T Consensus 74 qyVi~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~ 114 (134)
T 4htu_A 74 QTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTY 114 (134)
T ss_dssp HHHHHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCcccCCCCCccCHHHHHHHHHHHHHHHhCCC
Confidence 999999985 3554 456666666666666666553
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.65 E-value=6.2e-17 Score=147.42 Aligned_cols=100 Identities=10% Similarity=0.119 Sum_probs=77.2
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeec
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFI 233 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~ 233 (565)
..+++|||||++ +| |||++|+|++|. ..|..+ ..+.++ +.. +||.|||+|+|.||+.|.++++ +|.|++
T Consensus 9 ~~~~~iy~DGa~-~g-----NpG~~G~G~vl~-~~g~~~-~~~~~~-~~~-TNN~aEl~A~i~aL~~~~~~~~-~v~i~t 77 (142)
T 1zbf_A 9 IIWESLSVDVGS-QG-----NPGIVEYKGVDT-KTGEVL-FEREPI-PIG-TNNMGEFLAIVHGLRYLKERNS-RKPIYS 77 (142)
T ss_dssp CCSSSEEEEEEE-CS-----SSEEEEEEEEET-TTCCEE-EECCCE-EEE-CHHHHHHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred CCeEEEEEeecc-CC-----CCCCeEEEEEEE-eCCEEE-EEeccc-CCc-CcHHHHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 346789999999 55 999999999998 556544 455556 544 5599999999999999999999 999999
Q ss_pred CCccchhhccCccCC----cchhhHHHHHHHHHHh
Q 008441 234 DCFPLFQFVTGRWPA----KQRKISVLVDQVSLLE 264 (565)
Q Consensus 234 DS~lv~~qv~G~w~~----k~~~l~~l~~~v~~Ll 264 (565)
||++|++++.+.|.. +..+...|.+.+..+.
T Consensus 78 DS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~ 112 (142)
T 1zbf_A 78 NSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAE 112 (142)
T ss_dssp SCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHH
T ss_pred ehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHH
Confidence 999999999999832 1223444555444443
No 16
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=1.4e-14 Score=122.55 Aligned_cols=86 Identities=22% Similarity=0.541 Sum_probs=76.0
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCC--CCCCCCCCCCCc--cchhhHHHhhhhHHHHHHH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGM--EPTCPHEGCKSK--LEVESCRIFLTLKLFEIWN 381 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~--~~kCP~~~C~~~--l~~~~i~~lL~~e~~e~y~ 381 (565)
...++|+||++++....++.+.+|+|.||++||++|++.+|.+|. .++||.++|+.. ++.+.++++|+++++++|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 347899999999887777777789999999999999999998875 369999999999 9999999999999999999
Q ss_pred HHHHHhcCCC
Q 008441 382 QRMKEALIPV 391 (565)
Q Consensus 382 ~~~~e~~i~~ 391 (565)
+++.+..++.
T Consensus 83 ~~~~~~~v~~ 92 (94)
T 1wim_A 83 KLQFERSGPS 92 (94)
T ss_dssp HHHHHSSCSS
T ss_pred HHHHHhhhcc
Confidence 9888776643
No 17
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.49 E-value=2.1e-14 Score=159.13 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=93.4
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeec
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFI 233 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~ 233 (565)
.+.|.|||||+++ + |||++|+|+++..+. .. ...+ +. ++||.|||+|+|.||+. +.++|.|++
T Consensus 434 ~~~~~iytDGs~~-~-----n~g~~g~G~v~~~~~--~~---~~~~-~~-~TNn~aEl~A~i~aL~~----~~~~v~I~t 496 (555)
T 1mu2_A 434 PGAETFYTDGSCN-R-----QSKEGKAGYVTDRGK--DK---VKKL-EQ-TTNQQAELEAFAMALTD----SGPKVNIIV 496 (555)
T ss_dssp TTCEEEEEEEEEC-T-----TTCCEEEEEEETTSC--EE---EEEE-SS-CCHHHHHHHHHHHHHHT----SCSEEEEEE
T ss_pred CCceEEEEccccc-C-----CCCCceEEEEEEeCC--Ee---eccC-CC-CCHHHHHHHHHHHHHHc----CCCeEEEEE
Confidence 5579999999994 4 999999999997642 21 2334 43 45699999999999987 779999999
Q ss_pred CCccchhhccCccCCcchhhHHHHHHHHHHhhhcccccccccccc----chHHHHHHHHHh
Q 008441 234 DCFPLFQFVTGRWPAKQRKISVLVDQVSLLEKRFSYFKPRHVARN----DMKYVYELARAA 290 (565)
Q Consensus 234 DS~lv~~qv~G~w~~k~~~l~~l~~~v~~Ll~~F~~~~~~~V~R~----~n~~Ad~LA~ea 290 (565)
||++|++++.+ |... .-.++.+++..++.++..+.+.||++. .|+.||+||+.+
T Consensus 497 DS~~v~~~i~~-~~~~--~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 554 (555)
T 1mu2_A 497 DSQYVMGIVAS-QPTE--SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp SCHHHHHHHHT-CCSE--ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred ehHHHHHHHhc-cccc--ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhh
Confidence 99999999988 7754 235566677777667788889999984 599999999976
No 18
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.44 E-value=3e-14 Score=157.96 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=87.4
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeec
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFI 233 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~ 233 (565)
.+.|.|||||+++ + |||++|+|+++.. |... .+ .+ + .++||.|||+|++.||+.| .++|.|++
T Consensus 437 ~~~~~iytDGs~~-~-----n~g~~g~g~v~~~--~~~~-~~--~~-~-~~TNn~aEl~Ai~~aL~~~----~~~v~I~t 499 (557)
T 2zd1_A 437 VGAETFYVDGAAN-R-----ETKLGKAGYVTNK--GRQK-VV--PL-T-NTTNQKTELQAIYLALQDS----GLEVNIVT 499 (557)
T ss_dssp TTSCEEEEEEEEC-T-----TTCCEEEEEEETT--SCEE-EE--EE-C-SCCHHHHHHHHHHHHHHHS----CSEEEEEE
T ss_pred CCCEEEEEccCCC-C-----CCCceEEEEEEEC--CcEE-Ee--cC-C-CCCHHHHHHHHHHHHHHhC----CCcEEEEe
Confidence 4569999999994 4 9999999999863 3321 11 23 3 3456999999999999987 68999999
Q ss_pred CCccchhhccCccCCcchhhHHHHHHHHHHhhhcccccccccccc----chHHHHHHHHHh
Q 008441 234 DCFPLFQFVTGRWPAKQRKISVLVDQVSLLEKRFSYFKPRHVARN----DMKYVYELARAA 290 (565)
Q Consensus 234 DS~lv~~qv~G~w~~k~~~l~~l~~~v~~Ll~~F~~~~~~~V~R~----~n~~Ad~LA~ea 290 (565)
||++|++++.+ |..++ -..+..++...+.++..+.+.||++. .|+.||+||+++
T Consensus 500 DS~~vi~~i~~-~~~~~--~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 500 DSQYALGIIQA-QPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCHHHHHHHTT-CCSEE--SSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred ChHHHHHHHhc-CCccC--CHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99999999987 66541 23444555544555667899999995 599999999864
No 19
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.02 E-value=5e-12 Score=105.13 Aligned_cols=72 Identities=21% Similarity=0.588 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCC-CCCcccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCCc---CCCCC
Q 008441 375 KLFEIWNQRMKEALIP-VTEKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVPW---HNNMT 450 (565)
Q Consensus 375 e~~e~y~~~~~e~~i~-~~~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~~---H~g~t 450 (565)
+++++|.+++.+..+. .++++||| +|++++... .....+.|+.|+..||+.|+.+| |.|.+
T Consensus 5 ~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~-------------~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~s 69 (86)
T 2ct7_A 5 SSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYE-------------REQLEATCPQCHQTFCVRCKRQWEEQHRGRS 69 (86)
T ss_dssp CCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECC-------------CSCSCEECTTTCCEECSSSCSBCCTTTTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCCEeECc--CCCchheec-------------CCCCceEeCCCCCccccccCCchhhcCCCCC
Confidence 4556677767676774 45678999 999987421 23456999999999999999999 99999
Q ss_pred hhhHhhhCCCC
Q 008441 451 CIYYKRLNPNP 461 (565)
Q Consensus 451 C~e~~~~~~~~ 461 (565)
|.+|++|...+
T Consensus 70 C~~~~~w~~~n 80 (86)
T 2ct7_A 70 CEDFQNWKRMN 80 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHhC
Confidence 99999986543
No 20
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=98.86 E-value=6.9e-11 Score=96.77 Aligned_cols=69 Identities=23% Similarity=0.471 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCcccccCCCCCCcccchhhhhccCCCcccccccCceeCC-----CCCCceecccCCCc
Q 008441 371 FLTLKLFEIWNQRMKEALIPVTEKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCT-----KCHRRFCIDCKVPW 445 (565)
Q Consensus 371 lL~~e~~e~y~~~~~e~~i~~~~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~-----~C~~~fC~~C~~~~ 445 (565)
+|+++++++|.+++.+..+.....+|||.|+|++++... .....+.|+ .|++.||+.|+.+|
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~-------------~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPE-------------PDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCC-------------SCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEEC-------------CCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 356677788888777777765569999999999988532 245668998 99999999999999
Q ss_pred CCCCChhh
Q 008441 446 HNNMTCIY 453 (565)
Q Consensus 446 H~g~tC~e 453 (565)
|. .+|.+
T Consensus 69 H~-~~C~~ 75 (80)
T 2jmo_A 69 HE-GECSA 75 (80)
T ss_dssp CS-SCSSS
T ss_pred cC-Ccccc
Confidence 99 99975
No 21
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=1.8e-10 Score=102.73 Aligned_cols=117 Identities=21% Similarity=0.473 Sum_probs=77.1
Q ss_pred cccccceeccccccC----CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHHHhhhhHHHHHHHH
Q 008441 307 INETCVICLEDTDVG----HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCRIFLTLKLFEIWNQ 382 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~----~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~~lL~~e~~e~y~~ 382 (565)
...+|+||++.+... .....++|||.||..|+.+|+..+ ..||. |+..+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~~~~~~l~~l~---------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------NTCPT--CRKKINHKRYHPIY---------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC------SBCTT--TCCBCTTTCEEECB----------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC------CCCCC--CCCcCccccccccc----------
Confidence 467999999986432 223455999999999999998532 38997 99988765543321
Q ss_pred HHHHhcCCCCCcccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCCcCCCCChhhHhhhCCCCC
Q 008441 383 RMKEALIPVTEKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVPWHNNMTCIYYKRLNPNPP 462 (565)
Q Consensus 383 ~~~e~~i~~~~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~g~tC~e~~~~~~~~~ 462 (565)
...+...|| -|...+.... ..........||+.||..|...|..
T Consensus 68 -------i~~~~~~C~--iC~~~~~~~~------------~~~~~~~~~~CgH~fc~~Ci~~~~~--------------- 111 (133)
T 4ap4_A 68 -------IGSGTVSCP--ICMDGYSEIV------------QNGRLIVSTECGHVFCSQCLRDSLK--------------- 111 (133)
T ss_dssp -------CSSSSCBCT--TTCCBHHHHH------------HTTCCEEEETTSBEEEHHHHHHHHH---------------
T ss_pred -------cCCCCCCCC--CCCCcccccc------------ccCcceEeCCCCChhhHHHHHHHHH---------------
Confidence 123456787 6766543210 0112234457999999999765431
Q ss_pred hhHHHHHHHHhcCCccccCCCCceeEec
Q 008441 463 TEDVKLKSLASSNLWRQCVKCNHLIELA 490 (565)
Q Consensus 463 ~ed~~l~~l~~~~~~k~CPkC~~~IEK~ 490 (565)
. .+.||.|+..|.++
T Consensus 112 -----------~--~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 -----------N--ANTCPTCRKKINHK 126 (133)
T ss_dssp -----------H--CSBCTTTCCBCCGG
T ss_pred -----------c--CCCCCCCCCcCChh
Confidence 1 16899999998765
No 22
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.65 E-value=1.8e-08 Score=94.15 Aligned_cols=120 Identities=22% Similarity=0.364 Sum_probs=72.9
Q ss_pred CcccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHHHhhhhHHHHHHHHH
Q 008441 304 GKTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCRIFLTLKLFEIWNQR 383 (565)
Q Consensus 304 ~~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~~lL~~e~~e~y~~~ 383 (565)
.....+.|+||++.+ .+++.+ +|||.||..|+..|+.... .+||. |+..+....+. ....+++
T Consensus 14 ~~~~~~~C~IC~~~~--~~pv~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~--Cr~~~~~~~~~---~~~~~~~---- 76 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REAVQT-PCGHRFCKACIIKSIRDAG-----HKCPV--DNEILLENQLF---PDNFAKR---- 76 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHHHC-----SBCTT--TCCBCCGGGCE---ECHHHHH----
T ss_pred CCCCCCCCCCCChhh--cCcEEC-CCCCHHHHHHHHHHHHhCC-----CCCCC--CccCcchhhhh---hhHHHHH----
Confidence 344578999999875 455654 8999999999999997541 28997 99888765432 1111111
Q ss_pred HHHhcCCCCCcccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCCcCCCCCh
Q 008441 384 MKEALIPVTEKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVPWHNNMTC 451 (565)
Q Consensus 384 ~~e~~i~~~~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~g~tC 451 (565)
... .-.++||+.+|+..+...++..-. ..=....+.|+.|+..+ .+....+|....|
T Consensus 77 ~i~-----~l~v~C~n~GC~~~~~~~~l~~H~-----~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C 133 (170)
T 3hcs_A 77 EIL-----SLMVKCPNEGCLHKMELRHLEDHQ-----AHCEFALMDCPQCQRPF-QKFHINIHILKDC 133 (170)
T ss_dssp HHH-----TSEEECCSTTCCCEEEGGGHHHHH-----TTCTTSEEECTTTCCEE-EGGGHHHHHHHTC
T ss_pred HHh-----hcccCCCCCCCCceecHhHHHHHH-----hcCCceeeECCCCChHH-HHHHHHHHhhhhC
Confidence 111 135799999999988766542100 00012346677666655 3333334443334
No 23
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.32 E-value=4.3e-07 Score=68.01 Aligned_cols=50 Identities=26% Similarity=0.493 Sum_probs=39.4
Q ss_pred cccccceecccccc-CCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 307 INETCVICLEDTDV-GHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 307 ~~~~C~IC~e~~~~-~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
...+|+||++.+.. ...+.+++|+|.||..|+..|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------YRCPL--CSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------CCCTT--SCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------CcCCC--CCCcCC
Confidence 46799999998743 3445667999999999999999764 47997 887663
No 24
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.31 E-value=3.7e-07 Score=79.62 Aligned_cols=84 Identities=18% Similarity=0.401 Sum_probs=58.6
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHHHhhhhHHHHHHHHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCRIFLTLKLFEIWNQRMKE 386 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~~lL~~e~~e~y~~~~~e 386 (565)
..+.|+||++.+ .+++.+ +|||.||..|+..|+... ...||. |+..+....+...+ ..+ ...+.
T Consensus 22 ~~~~C~IC~~~~--~~p~~~-~CgH~fC~~Ci~~~~~~~-----~~~CP~--Cr~~~~~~~~~~~~-~~l----~~~i~- 85 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVET-SCKHLFCRICILRCLKVM-----GSYCPS--CRYPCFPTDLESPV-KSF----LNILN- 85 (116)
T ss_dssp HHTBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHHT-----CSBCTT--TCCBCCGGGCBCCC-HHH----HHHHH-
T ss_pred CCCCCCCCCcHh--cCcEEc-CCCCcccHHHHHHHHhHC-----cCcCCC--CCCCCCHhhccccH-HHH----HHHHH-
Confidence 367999999876 455554 999999999999999752 247997 99998876543221 111 11111
Q ss_pred hcCCCCCcccccCCCCCCcccchhh
Q 008441 387 ALIPVTEKVYCPYPKCSALMSKSEI 411 (565)
Q Consensus 387 ~~i~~~~~~~CP~p~C~~~i~~~~~ 411 (565)
.-.++||+.+|+..+...++
T Consensus 86 -----~l~v~C~~~gC~~~~~~~~~ 105 (116)
T 1rmd_A 86 -----SLMVKCPAQDCNEEVSLEKY 105 (116)
T ss_dssp -----HCEEECCSTTCCCEEEHHHH
T ss_pred -----HhcCCCCCCCCcchhhHhHH
Confidence 12578999999998876554
No 25
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=8.9e-07 Score=74.44 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=46.7
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCc-cchhhH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSK-LEVESC 368 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~-l~~~~i 368 (565)
...+.|+||++.+ .+++.+..|||.||+.||..|+...-..+..++||..+|... +....+
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 3578999999875 577776459999999999999976432234568999999977 665443
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=6.7e-07 Score=72.94 Aligned_cols=57 Identities=28% Similarity=0.643 Sum_probs=45.6
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
....+|+||++.+. +++.+ +|+|.||..|+..|+......+..+.||. |+..+....
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPV--CRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTT--TCCSSCSSS
T ss_pred cCCCCCCCCCcccC--CceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCC--CCCccCHHh
Confidence 35689999998864 44444 89999999999999988766666679997 998887644
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.6e-07 Score=75.29 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=45.2
Q ss_pred ccccccceeccccccCCc-eeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHHHh
Q 008441 306 TINETCVICLEDTDVGHM-FSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCRIF 371 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~-~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~~l 371 (565)
....+|+||++.+..... ..+++|||.||..|+..|+... +....||. |+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTT--TCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCC--CCCcccchhHHHH
Confidence 346899999998754331 3445999999999999999753 23468997 9998877655443
No 28
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.28 E-value=7.2e-07 Score=78.11 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=58.7
Q ss_pred cccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHHHhhhhHHHHHHHHHH
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCRIFLTLKLFEIWNQRM 384 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~~lL~~e~~e~y~~~~ 384 (565)
....+.|+||++.+ .+++.+ +|||.||..|+..|+...- ..||. |+..+....+. ....+++ .
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~--Cr~~~~~~~~~---~~~~l~~----~ 77 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQT-PCGHRFCKACIIKSIRDAG-----HKCPV--DNEILLENQLF---PDNFAKR----E 77 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHHHC-----SBCTT--TCCBCCGGGCE---ECHHHHH----H
T ss_pred CCCCCCCCcCChhh--cCeEEC-CcCChhhHHHHHHHHhhCC-----CCCCC--CCCCcCHHhcc---cCHHHHH----H
Confidence 34568999999876 355555 8999999999999997541 27997 99988765432 1111111 1
Q ss_pred HHhcCCCCCcccccCCCCCCcccchhh
Q 008441 385 KEALIPVTEKVYCPYPKCSALMSKSEI 411 (565)
Q Consensus 385 ~e~~i~~~~~~~CP~p~C~~~i~~~~~ 411 (565)
.. .-.++||+.+|+..+...++
T Consensus 78 i~-----~l~v~C~n~gC~~~~~~~~l 99 (118)
T 3hct_A 78 IL-----SLMVKCPNEGCLHKMELRHL 99 (118)
T ss_dssp HH-----TSEEECSSTTCCCEEEGGGS
T ss_pred Hc-----cceeECCCCCCCCEEeeHHH
Confidence 11 13579999999998876554
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.26 E-value=6.6e-07 Score=77.25 Aligned_cols=54 Identities=33% Similarity=0.641 Sum_probs=41.2
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR 369 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~ 369 (565)
...|+||++.+. +++.+ +|||.||..|+..|+... ...+.||. |+..+....+.
T Consensus 21 ~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~~---~~~~~CP~--Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIK--EPVST-KCDHIFCKFCMLKLLNQK---KGPSQCPL--CKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCS--SCCBC-TTSCCCCSHHHHHHHHSS---SSSCCCTT--TSCCCCTTTCB
T ss_pred CCCCcccChhhc--CeEEC-CCCCHHHHHHHHHHHHhC---CCCCCCcC--CCCcCCHhhcC
Confidence 568999998763 44444 899999999999998632 22358997 99988876543
No 30
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.23 E-value=1.4e-06 Score=68.40 Aligned_cols=53 Identities=25% Similarity=0.634 Sum_probs=41.2
Q ss_pred cccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
......|+||++.+.....+..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN------KKCPI--CRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC------SBCTT--TCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC------CCCcC--cCccccC
Confidence 34567999999987655555566999999999999999652 26997 9887653
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.19 E-value=9.5e-07 Score=72.01 Aligned_cols=57 Identities=26% Similarity=0.555 Sum_probs=43.5
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...++|+||++.+. +++. ++|+|.||..|+..|+......+..+.||. |+..+....
T Consensus 17 ~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPV--CRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCS--SCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTT--TCCCCCTTC
T ss_pred ccCCCCcCCChhhC--ccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCC--CCCcCCHHh
Confidence 35689999998863 4444 489999999999999976543344568997 998887654
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.17 E-value=3.4e-07 Score=72.32 Aligned_cols=56 Identities=21% Similarity=0.635 Sum_probs=42.6
Q ss_pred ccccccceeccccccC----CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH
Q 008441 306 TINETCVICLEDTDVG----HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR 369 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~----~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~ 369 (565)
....+|+||++.+... ....+++|+|.||..|+.+|+..+ ..||. |+..+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------NTCPT--CRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------SBCTT--TCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------CCCCC--CCCccChhhee
Confidence 3568999999986432 334566999999999999999643 38997 99988765543
No 33
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=7.3e-07 Score=71.43 Aligned_cols=52 Identities=23% Similarity=0.632 Sum_probs=41.6
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
....+|+||++.+.....+..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------CcCcC--cCCcCCC
Confidence 3567899999998766666666899999999999998642 37997 9887754
No 34
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=7.9e-07 Score=70.68 Aligned_cols=53 Identities=26% Similarity=0.543 Sum_probs=41.6
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESC 368 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i 368 (565)
.....|+||++.+. +++.+.+|+|.||..|+..|+.. ...||. |+..+....+
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~--Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY------SNRCPK--CNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH------CSSCTT--TCCCCCSSCS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc------CCcCCC--cCcccCcccc
Confidence 35689999998763 45555699999999999999965 248997 9988876543
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.15 E-value=1.3e-06 Score=74.25 Aligned_cols=54 Identities=26% Similarity=0.665 Sum_probs=43.3
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR 369 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~ 369 (565)
..+.|+||++.+ .+++.+++|||.||..|+..|+... + ..||. |+..+....+.
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~---~--~~CP~--Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ---R--AQCPH--CRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT---C--SBCTT--TCCBCCGGGCE
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC---c--CCCCC--CCCcCCHHHhH
Confidence 467999999886 4566646999999999999999753 1 58997 99998876654
No 36
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.5e-06 Score=69.31 Aligned_cols=51 Identities=29% Similarity=0.666 Sum_probs=40.7
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
....+|+||++.+.....+..++|+|.||..|+..|+..+ ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC------CcCCC--cCcccc
Confidence 3467999999998666655566899999999999999652 27997 988764
No 37
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=8e-07 Score=70.58 Aligned_cols=55 Identities=25% Similarity=0.550 Sum_probs=41.7
Q ss_pred cccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
......|+||++.+. +++.+ +|+|.||..|+..|+.. .+..+.||. |+..+....
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~-~CgH~fC~~Ci~~~~~~---~~~~~~CP~--Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTI-DCGHNFCLKCITQIGET---SCGFFKCPL--CKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEEC-TTCCEEEHHHHHHHCSS---SCSCCCCSS--SCCCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEc-CCCChhhHHHHHHHHHc---CCCCCCCCC--CCCcCCccc
Confidence 345689999998764 55555 99999999999999851 233468997 999887654
No 38
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.14 E-value=6.8e-07 Score=72.09 Aligned_cols=54 Identities=24% Similarity=0.540 Sum_probs=42.4
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
....+|+||++.+.....+..++|+|.||..|+..|+... ..||. |+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~--Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------DSCPV--CRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------CSCTT--TCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------CcCcC--cCCccCCcc
Confidence 3467999999998665555566999999999999998432 48997 998876543
No 39
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=67.93 Aligned_cols=52 Identities=21% Similarity=0.460 Sum_probs=40.1
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...+.|+||++.+. +++.+ +|||.||..|+..|+. ....+||. |+..+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~-----~~~~~CP~--Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQT-ECGHRFCESCMAALLS-----SSSPKCTA--CQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEES--SCCCC-SSSCCCCHHHHHHHHT-----TSSCCCTT--TCCCCCTTT
T ss_pred CcCCCCCCCChHhc--CeeEC-CCCCHHHHHHHHHHHH-----hCcCCCCC--CCcCCChhh
Confidence 34689999998863 44444 9999999999999985 22358997 998887654
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.12 E-value=5.6e-07 Score=69.36 Aligned_cols=54 Identities=22% Similarity=0.663 Sum_probs=41.1
Q ss_pred ccccceeccccccC----CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH
Q 008441 308 NETCVICLEDTDVG----HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR 369 (565)
Q Consensus 308 ~~~C~IC~e~~~~~----~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~ 369 (565)
..+|+||++.+... +.+.+.+|+|.||..|+.+|+.. ...||. |+..+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~--Cr~~~~~~~~~ 60 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPT--CRKKINHKRYH 60 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTT--TCCBCTTTCEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCC--CCccCCcccee
Confidence 57899999986432 33345699999999999999975 238997 99988765543
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.09 E-value=2.3e-06 Score=71.20 Aligned_cols=49 Identities=29% Similarity=0.600 Sum_probs=38.5
Q ss_pred ccccccceeccccccCCceeecC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCcc
Q 008441 306 TINETCVICLEDTDVGHMFSIDG-CLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKL 363 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~-C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l 363 (565)
...++|+||++.+ .+++.+ + |||.||..|+..|+.. .....||. |+..+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~-~~CgH~fC~~Ci~~~~~~----~~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVI-PCCGNSYCDECIRTALLE----SDEHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEEC-TTTCCEECHHHHHHHHHH----CTTCCCTT--TCCSS
T ss_pred CcCCCCCCCChhh--cCceEC-CCCCCHHHHHHHHHHHHh----cCCCcCcC--CCCcC
Confidence 3468999999876 356666 6 9999999999999863 22358997 99886
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.09 E-value=2.5e-06 Score=72.09 Aligned_cols=66 Identities=26% Similarity=0.495 Sum_probs=46.9
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH-HhhhhHHHHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR-IFLTLKLFEIWNQ 382 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~-~lL~~e~~e~y~~ 382 (565)
..+.|+||++.+. +++.+.+|||.||..|+..|+.. ...||. |+..+....+. +..-.++++.|.+
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY------KTQCPT--CCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHH
Confidence 3579999998864 45555589999999999999952 248997 99988865443 3333445555543
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.8e-06 Score=64.76 Aligned_cols=46 Identities=26% Similarity=0.521 Sum_probs=35.3
Q ss_pred cccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPH 356 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~ 356 (565)
.....+|+||++.+. +++.+ +|||.||..|+.+|+.. .+...+||.
T Consensus 17 ~~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~---~~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQ--KPVTI-DCGHNFCLKCITQIGET---SCGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCS--SCEEC-TTSSEECHHHHHHHHHH---CSSCCCCSC
T ss_pred CccCCCCCcCCchhC--CeEEe-CCCCcchHHHHHHHHHc---CCCCCcCcC
Confidence 345689999998864 55555 99999999999999974 233457885
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.08 E-value=2.1e-06 Score=69.10 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=45.8
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH-HhhhhHHHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR-IFLTLKLFEIWN 381 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~-~lL~~e~~e~y~ 381 (565)
..+.|+||++.+ .+++.+ +|||.||+.|+..|+.. + ..+||. |+..+....+. +..-.++++.|.
T Consensus 7 ~~~~C~IC~~~~--~~Pv~~-~CgH~fc~~Ci~~~~~~----~-~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 7 EYFRCPISLELM--KDPVIV-STGQTYERSSIQKWLDA----G-HKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSCTTTSCCC--SSEEEE-TTTEEEEHHHHHHHHTT----T-CCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred ccCCCCCccccc--cCCEEc-CCCCeecHHHHHHHHHH----C-cCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 468999999875 456665 89999999999999952 1 348997 99988765432 222344444443
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.06 E-value=2.2e-06 Score=64.08 Aligned_cols=50 Identities=22% Similarity=0.540 Sum_probs=37.7
Q ss_pred cccccceeccccccCCceeecC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 307 INETCVICLEDTDVGHMFSIDG-CLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~-C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
...+|+||++.+...+....++ |+|.||..|+.+|+.. ...||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc------CCcCcC--CCCEeE
Confidence 3568999999986544444444 9999999999999843 247997 887764
No 46
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.4e-06 Score=66.75 Aligned_cols=52 Identities=23% Similarity=0.689 Sum_probs=39.5
Q ss_pred cccccccceeccccccC----CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 305 KTINETCVICLEDTDVG----HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~----~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
......|+||++.+... ..+.+++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPT--CRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTT--TCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCC--CCCccC
Confidence 34568999999986432 33355699999999999999975 237997 988765
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.05 E-value=4.6e-07 Score=82.07 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=56.7
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH------HhhhhHHHHH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR------IFLTLKLFEI 379 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~------~lL~~e~~e~ 379 (565)
...+.|+||++.+ .+++.+ .|||.||..|+..|+.. ....||. |+..+...... .++....+++
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~-~CgH~FC~~Ci~~~~~~-----~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~~ 98 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQA-QCGHRYCSFCLASILSS-----GPQNCAA--CVHEGIYEEGISILESSSAFPDNAARR 98 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHGGG-----SCEECHH--HHHTTCCCTTTTEECGGGCEECHHHHH
T ss_pred CcCcCCCCCChhh--cCcEEC-CCCCccCHHHHHHHHhc-----CCCCCCC--CCCcccccccccccchhhhcccHHHHH
Confidence 3578999999875 455555 99999999999999842 2247996 88765433221 2222222221
Q ss_pred HHHHHHHhcCCCCCcccccCCCCCCcccchhh
Q 008441 380 WNQRMKEALIPVTEKVYCPYPKCSALMSKSEI 411 (565)
Q Consensus 380 y~~~~~e~~i~~~~~~~CP~p~C~~~i~~~~~ 411 (565)
... .-.++||+.+|+..+...++
T Consensus 99 ----~i~-----~L~v~Cpn~GC~~~~~l~~l 121 (141)
T 3knv_A 99 ----EVE-----SLPAVCPSDGCTWKGTLKEY 121 (141)
T ss_dssp ----HHH-----TSEEECCSTTCCCEEEHHHH
T ss_pred ----HHc-----ccccccCCCCCCCEeEHHHH
Confidence 111 23579999999998876554
No 48
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.04 E-value=1.6e-06 Score=67.37 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=39.7
Q ss_pred ccccceecc-ccccC-CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH
Q 008441 308 NETCVICLE-DTDVG-HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR 369 (565)
Q Consensus 308 ~~~C~IC~e-~~~~~-~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~ 369 (565)
..+|+||++ .+... ..+.+.+|||.||..|+.+|+.. ...+||. |+..+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~--Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GAGNCPE--CGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----TSSSCTT--TCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----CCCcCCC--CCCccccccce
Confidence 468999999 44322 22234599999999999999752 2348997 99988766554
No 49
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=1.6e-06 Score=68.69 Aligned_cols=53 Identities=26% Similarity=0.620 Sum_probs=41.0
Q ss_pred cccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhH
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESC 368 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i 368 (565)
.....+|+||++.+ .+++.+ +|+|.||..|+..|+... ..||. |+..+....+
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~-~CgH~fC~~Ci~~~~~~~------~~CP~--Cr~~~~~~~~ 64 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSL-PCKHVFCYLCVKGASWLG------KRCAL--CRQEIPEDFL 64 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEE-TTTEEEEHHHHHHCTTCS------SBCSS--SCCBCCHHHH
T ss_pred CCCCCCCccCCccc--CCCEEc-cCCCHHHHHHHHHHHHCC------CcCcC--cCchhCHhhc
Confidence 34568999999885 445555 899999999999988421 58997 9999876554
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.01 E-value=1.9e-06 Score=69.82 Aligned_cols=55 Identities=16% Similarity=0.472 Sum_probs=39.5
Q ss_pred ccccccceeccccccCCceee-cCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSI-DGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l-~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
....+|+||++.+...++..+ ..|||.||..|+..++.. ....||. |+..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----~~~~CP~--CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPA--CRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----SCSBCTT--TCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----CCCCCCC--CCCccCCCc
Confidence 456899999998754433222 249999999999988632 2358997 998876543
No 51
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.00 E-value=5.7e-06 Score=66.09 Aligned_cols=52 Identities=27% Similarity=0.531 Sum_probs=39.0
Q ss_pred cccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
....+.|+||++.+ .+++.+..|+|.||..|+..|+... ....||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~--Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES----DEHTCPT--CHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS----SSSCCSS--SCCSSC
T ss_pred CCCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc----CCCcCCC--CCCcCC
Confidence 34578999999876 3556553399999999999999752 2358997 988643
No 52
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.98 E-value=4.3e-06 Score=73.73 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=39.1
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
..++|+||++.+. +++.+ +|||.||..|+..|+. .....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~-----~~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPITT-VCQHNVCKDCLDRSFR-----AQVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEEC-TTSCEEEHHHHHHHHH-----TTCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHc--CcEEe-eCCCcccHHHHHHHHh-----HCcCCCCC--CCccCCC
Confidence 3579999998863 55555 9999999999999996 23358997 9988865
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.96 E-value=4.8e-06 Score=69.37 Aligned_cols=52 Identities=21% Similarity=0.474 Sum_probs=40.8
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
.....|+||++.+.....+..++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc------CCcCcC--cCccCCC
Confidence 356789999999866555555689999999999999842 237997 9887753
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.96 E-value=4.1e-06 Score=82.59 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=53.8
Q ss_pred CcccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH-HhhhhHHHHHHHH
Q 008441 304 GKTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR-IFLTLKLFEIWNQ 382 (565)
Q Consensus 304 ~~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~-~lL~~e~~e~y~~ 382 (565)
+....+.|+||++.+ .++++...|||.||+.|+..|+.. +....||..||+..+....+. +..-..+++.+.+
T Consensus 177 ~~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~----~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 177 GGKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG----YTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp SSBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT----CSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh----CCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 345678999999876 677776689999999999999852 223589999999988776542 2222345555555
Q ss_pred HH
Q 008441 383 RM 384 (565)
Q Consensus 383 ~~ 384 (565)
+.
T Consensus 251 r~ 252 (267)
T 3htk_C 251 KE 252 (267)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 55
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=8.9e-06 Score=66.00 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=38.4
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
...+.|+||++.+ .+++. ++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVV-TKCRHYFCESCALEHFRA------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEE-CTTSCEEEHHHHHHHHHH------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchh--cCeeE-ccCCCHhHHHHHHHHHHC------CCcCCC--cCcccc
Confidence 3467999999886 34554 599999999999999964 348997 998875
No 56
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.94 E-value=9.4e-07 Score=71.27 Aligned_cols=58 Identities=29% Similarity=0.582 Sum_probs=42.3
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhC-CCCCCCCCCCCCCccchhhH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQ-GMEPTCPHEGCKSKLEVESC 368 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~-g~~~kCP~~~C~~~l~~~~i 368 (565)
....+|+||++.+. +++.+ +|||.||..|+..|+...... +....||. |+..+....+
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECS--SCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSGG
T ss_pred ccCCCCcCCCcccC--CeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhhC
Confidence 34689999999864 44444 899999999999988542211 22468997 9998876543
No 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.92 E-value=3.7e-06 Score=72.24 Aligned_cols=49 Identities=27% Similarity=0.600 Sum_probs=39.5
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
..+.|+||++.+ .+++.+.+|||.||..|+..|+.. ...||. |+..+..
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET------SKYCPI--CDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS------CSBCTT--TCCBSCS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh------CCcCcC--CCccccc
Confidence 468999999886 456666699999999999999853 158997 9988764
No 58
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.89 E-value=8.7e-06 Score=63.59 Aligned_cols=47 Identities=43% Similarity=1.025 Sum_probs=37.0
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
..+|+||++.+. +....++|+|.||..|+..|+... ..||. |+..+.
T Consensus 5 ~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQN------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHS------CSTTT--TCCCCC
T ss_pred CCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCc------CcCcC--CChhhH
Confidence 568999998863 433456999999999999998542 37997 988765
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.87 E-value=1.8e-05 Score=65.04 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=46.9
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH-HhhhhHHHHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR-IFLTLKLFEIWNQ 382 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~-~lL~~e~~e~y~~ 382 (565)
..+.|+||++-+ .+++.+ +|||.||+.|+..|+.. ..+||. |+..+....+. +..-.+.++.|.+
T Consensus 13 ~~~~CpI~~~~m--~dPV~~-~cGhtf~r~~I~~~l~~------~~~cP~--~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVRL-PSGTVMDRSIILRHLLN------SPTDPF--NRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp TTTBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHH------CSBCTT--TCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred hheECcccCchh--cCCeEC-CCCCEECHHHHHHHHhc------CCCCCC--CcCCCChHhcchHHHHHHHHHHHHH
Confidence 478999999875 577766 79999999999999974 248997 88888765432 2222445555543
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.84 E-value=4.1e-06 Score=73.15 Aligned_cols=64 Identities=17% Similarity=0.395 Sum_probs=45.1
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH-HhhhhHHHHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR-IFLTLKLFEIWNQ 382 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~-~lL~~e~~e~y~~ 382 (565)
..++|+||++.+ .+++.+.+|||.||..|+..|+. ..||. |+..+....+. +..-.++++.+.+
T Consensus 21 ~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~--Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 21 KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--------TGCPV--CYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT--------TBCSS--SCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc--------CCCcC--CCCcCccccccccHHHHHHHHHHHH
Confidence 367999999886 45555548999999999999875 58997 99888654432 2333444554443
No 61
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.82 E-value=1.2e-05 Score=69.55 Aligned_cols=54 Identities=26% Similarity=0.594 Sum_probs=38.9
Q ss_pred ccccceeccccccC---------------CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 308 NETCVICLEDTDVG---------------HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 308 ~~~C~IC~e~~~~~---------------~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
..+|+||++.+... ....+++|+|.||..||..|+.... ......||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCC--CCCccC
Confidence 46999999997432 1333679999999999999995321 123358997 987764
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.80 E-value=8.3e-06 Score=70.83 Aligned_cols=50 Identities=24% Similarity=0.622 Sum_probs=39.2
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
...++|+||++.+ .+++.+ +|||.||..|+..|+.. ....||. |+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~-~CgH~fC~~Ci~~~~~~-----~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTL-PCNHTLCKPCFQSTVEK-----ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEEC-TTSCEECHHHHCCCCCT-----TTSBCTT--TCCBCHH
T ss_pred CCCCCCccCCccc--CceeEc-CCCCHHhHHHHHHHHhH-----CcCCCCC--CCcccCc
Confidence 3468999999876 456655 89999999999988742 2358997 9998874
No 63
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.80 E-value=1.1e-05 Score=72.42 Aligned_cols=47 Identities=23% Similarity=0.759 Sum_probs=37.1
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
.++|+||++.+ .+++.+ +|||.||..|+..|+.. ...||. |+..+..
T Consensus 53 ~~~C~iC~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~------~~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTL-NCAHSFCSYCINEWMKR------KIECPI--CRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBC--SSEEEE-TTSCEEEHHHHHHHTTT------CSBCTT--TCCBCCC
T ss_pred cCCCcccCccc--CCceEC-CCCCCccHHHHHHHHHc------CCcCCC--CCCcCCC
Confidence 46899999886 455655 89999999999999742 247997 9988753
No 64
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.77 E-value=1.4e-05 Score=73.09 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=39.4
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchh
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVE 366 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~ 366 (565)
.+.|+||++.+ .+++.+ +|+|.||..|+..|+.. ..+.||. |+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~-~CgH~fC~~Ci~~~~~~-----~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTT-ECFHNVCKDCLQRSFKA-----QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEEC-TTSCEEEHHHHHHHHHT-----TCCBCTT--TCCBCCTT
T ss_pred CCEeecCChhh--cCCEEc-CCCCchhHHHHHHHHHh-----CCCcCCC--CCccCCCC
Confidence 57999999875 455554 99999999999999963 2358997 99988765
No 65
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.5e-05 Score=59.97 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=33.0
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPH 356 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~ 356 (565)
.....|+||++.+. +++. ++|+|.||..|+.+|+.. ......||.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~---~~~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVI-IECGHNFCKACITRWWED---LERDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCC-CSSCCCCCHHHHHHHTTS---SCCSCCCSC
T ss_pred ccCCCCccCCcccC--ccEe-CCCCCccCHHHHHHHHHh---cCCCCCCCC
Confidence 34679999998864 3444 489999999999999742 123357885
No 66
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.66 E-value=2.7e-05 Score=72.04 Aligned_cols=49 Identities=33% Similarity=0.836 Sum_probs=39.2
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
..+.|+||++.+. +++.+.+|||.||..|+..|+.. + ...||. |+..+.
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~-~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G-NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T-CCBCTT--TCCBCC
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C-cCCCCC--CCCcCC
Confidence 4679999998864 56666699999999999999962 1 347997 998875
No 67
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.65 E-value=2.6e-05 Score=65.97 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=41.0
Q ss_pred ccccccceeccccccCCceeecCCC-cccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCL-HRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~-H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...+.|+||++.+ .+++.+ +|| |.||+.|+..|+.. ...||. |+..+....
T Consensus 20 p~~~~CpI~~~~m--~dPV~~-~cG~htf~r~cI~~~l~~------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVL-PSSRVTVDRSTIARHLLS------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEEC-TTTCCEEEHHHHHHHTTT------SCBCTT--TCSBCCTTT
T ss_pred cHhcCCcCccccc--cCCeEC-CCCCeEECHHHHHHHHHh------CCCCCC--CCCCCChhh
Confidence 3478999999875 577766 899 99999999999963 248997 998887654
No 68
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.64 E-value=2.2e-05 Score=66.65 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=41.1
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...+.|+||++.+ .+++.+ +|||.||+.|+..|+.. ..+||. |+..+....
T Consensus 27 p~~~~CpI~~~~m--~dPV~~-~cGhtf~r~~I~~~l~~------~~~cP~--~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRL-PSGTIMDRSIILRHLLN------SPTDPF--NRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEE-TTTEEEEHHHHHHHTTS------CSBCSS--SCCBCCTTS
T ss_pred cHhhCCcCccCcc--cCCeEC-CCCCEEchHHHHHHHHc------CCCCCC--CCCCCChhh
Confidence 3478999999875 577777 79999999999999952 248997 888887654
No 69
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=6.5e-06 Score=64.77 Aligned_cols=46 Identities=28% Similarity=0.779 Sum_probs=35.4
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
....|+||++.+.. + +++|+|.||..|+..|+. ....||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~~---~-~~~CgH~fc~~Ci~~~~~------~~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD---L-ILPCAHSFCQKCIDKWSD------RHRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS---E-EETTTEEECHHHHHHSSC------CCSSCHH--HHHCTT
T ss_pred CCCCCeeCCcCccC---c-ccCCCCcccHHHHHHHHH------CcCcCCC--cCCccc
Confidence 46799999998643 3 448999999999999875 2347986 776654
No 70
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.60 E-value=1.2e-05 Score=66.39 Aligned_cols=51 Identities=22% Similarity=0.653 Sum_probs=41.0
Q ss_pred CccccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCCCCC
Q 008441 476 LWRQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPLWDE 526 (565)
Q Consensus 476 ~~k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~~~~ 526 (565)
..+.||+|...+....+-..++| .|++.||+.|+.+|..-|....|..|..
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 34679999999988888888999 5999999999999955455557766543
No 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.4e-05 Score=63.70 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=38.3
Q ss_pred cccccceecccccc-----------C-CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 307 INETCVICLEDTDV-----------G-HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 307 ~~~~C~IC~e~~~~-----------~-~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...+|+||++.+.. . .+..+..|+|.||..|+.+|+..+ ..||. |+..+....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------NRCPL--CQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------CBCTT--TCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------CCCCC--cCCCcchhh
Confidence 45678888877632 2 244565799999999999998532 37997 998876543
No 72
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.57 E-value=1.6e-05 Score=59.95 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=34.9
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
....+|+||++.+. ++.. ++|+|.||..|+.. ...+||. |+..+..
T Consensus 4 ~~~~~C~IC~~~~~--~p~~-l~CgH~fC~~Ci~~---------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPKL-LPCLHTLCSGCLEA---------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB--CCSC-STTSCCSBTTTCSS---------SSSSCSS--CCSSSSC
T ss_pred ccCCCceEeCCccC--CeEE-cCCCCcccHHHHcc---------CCCCCCc--CCcEeec
Confidence 34678999998864 3443 48999999999876 2458997 9887654
No 73
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.36 E-value=0.00033 Score=69.65 Aligned_cols=52 Identities=17% Similarity=0.041 Sum_probs=40.9
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...+.|+||++.+ .+++.+ +|||+||+.|+..|+.. .+ ..||. |+..+....
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~-~~gh~f~~~~i~~~~~~---~~--~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCIT-PSGITYDRKDIEEHLQR---VG--HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEEC-SSCCEEETTHHHHHHHH---TC--SSCTT--TCCCCCGGG
T ss_pred CcccCCcCcCCHh--cCCeEC-CCCCEECHHHHHHHHHH---CC--CCCcC--CCCCCchhc
Confidence 3578999999875 577766 79999999999999964 12 24997 999887654
No 74
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.22 E-value=0.00034 Score=65.54 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=41.5
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhh
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVES 367 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~ 367 (565)
...+.|+||++.+ .+++.+ +|||.||+.|+..|+.. .+. .||. |+..+....
T Consensus 104 p~~f~CPI~~elm--~DPV~~-~~Ghtfer~~I~~~l~~---~~~--tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCIT-PSGITYDRKDIEEHLQR---VGH--FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEEC-TTSCEEEHHHHHHHHHH---TCS--BCTT--TCCBCCGGG
T ss_pred cHhhcccCccccC--CCCeEC-CCCCEECHHHHHHHHHh---CCC--CCCC--CcCCCChhh
Confidence 3578999999875 567766 89999999999999964 232 6997 898887654
No 75
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.18 E-value=0.00013 Score=58.16 Aligned_cols=42 Identities=24% Similarity=0.652 Sum_probs=33.5
Q ss_pred ccccceeccccccCCceeecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
...|+||++.+ .+++.+ +|||. ||..|+..+ .+||. |+..+.
T Consensus 24 ~~~C~iC~~~~--~~~~~~-pCgH~~~C~~C~~~~----------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFV-PCGHLVTCKQCAEAV----------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSSSB--CCEEEE-TTCCBCCCHHHHTTC----------SBCTT--TCCBCS
T ss_pred CCCCCCCCCCC--CCEEEc-CCCChhHHHHhhhcC----------ccCCC--cCcCcc
Confidence 56899999874 445544 99999 999999865 48997 988765
No 76
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.17 E-value=0.0001 Score=59.82 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=35.0
Q ss_pred ccccCC--CCceeEecCCcceEEe------ecCccccccccccccC
Q 008441 477 WRQCVK--CNHLIELAEGCFHMTC------RCGHEFCYNCGAEWKN 514 (565)
Q Consensus 477 ~k~CPk--C~~~IEK~~GCnHMtC------~Cg~~FCw~C~~~~~~ 514 (565)
.+.||. |+..|....++..++| .||+.||+.|+..|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 588997 9999998889999999 7999999999999975
No 77
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0005 Score=55.78 Aligned_cols=55 Identities=24% Similarity=0.472 Sum_probs=41.9
Q ss_pred cccccccceeccccccCCceeecCCC-----cccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchh
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGCL-----HRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVE 366 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C~-----H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~ 366 (565)
......|.||++++...+.+ +++|. |.|+..||.+|+..+ ....||. |+..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS----DTRCCEL--CKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH----CCSBCSS--SCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC----CCCCCCC--CCCeeecC
Confidence 34467899999988655555 35886 999999999999764 1248997 99887653
No 78
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.11 E-value=0.00012 Score=64.55 Aligned_cols=57 Identities=23% Similarity=0.683 Sum_probs=42.4
Q ss_pred cccccccceecccccc----CCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhHH
Q 008441 305 KTINETCVICLEDTDV----GHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESCR 369 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~----~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i~ 369 (565)
......|+||++.+.. .......+|+|.||..|+..|+... ..||. |+..+..+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~--Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------NTCPT--CRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------SBCTT--TCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------CCCCC--CCCcCChhcce
Confidence 3456789999988642 1223455999999999999999642 38997 99998876543
No 79
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.00025 Score=56.57 Aligned_cols=43 Identities=23% Similarity=0.592 Sum_probs=32.5
Q ss_pred ccccceeccccccCCceeecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
..+|+||++.+ .+++. ++|||. ||..|+.. ..+||. |+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~-~pCgH~~~C~~C~~~----------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVF-VPCGHLVTCKQCAEA----------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCC-SSSCCCCBCHHHHHH----------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCCCC--CCEEE-ecCCCHHHHHHHhhC----------CCCCcc--CCceecC
Confidence 56899999875 34443 499999 99999953 148997 9887653
No 80
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.02 E-value=0.00023 Score=61.05 Aligned_cols=51 Identities=20% Similarity=0.494 Sum_probs=38.4
Q ss_pred cccccceeccccccC---------------CceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 307 INETCVICLEDTDVG---------------HMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~---------------~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
...+|.||++.+... ..+.+++|+|.||..|+..|+.. ...||. |+..+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~--Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPL--DNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSS--SCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------CCcCcC--CCCccee
Confidence 457899999887533 12445699999999999999853 247997 9987654
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00088 Score=52.47 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=34.7
Q ss_pred CcccccccceeccccccCCceeecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 304 GKTINETCVICLEDTDVGHMFSIDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 304 ~~~~~~~C~IC~e~~~~~~~~~l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
.......|.||++.. .++ .+++|+|. ||..|+.. ..+||. |+..+..
T Consensus 11 ~~~~~~~C~IC~~~~--~~~-v~~pCgH~~~C~~C~~~----------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT--VNW-VLLPCRHTCLCDGCVKY----------FQQCPM--CRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSC--CCC-EETTTTBCCSCTTHHHH----------CSSCTT--TCCCCCC
T ss_pred cCCCCCCCCCcCcCC--CCE-EEECCCChhhhHHHHhc----------CCCCCC--CCcchhc
Confidence 344567999999874 333 35599999 99999983 248997 9887653
No 82
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.91 E-value=0.00058 Score=71.33 Aligned_cols=49 Identities=24% Similarity=0.603 Sum_probs=37.7
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchh
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVE 366 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~ 366 (565)
..+|+||++.. .+++. .+|||.||..|+..|+.. ....||. |+..+...
T Consensus 332 ~~~C~ICle~~--~~pv~-lpCGH~FC~~Ci~~wl~~-----~~~~CP~--CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKI-EPCGHLMCTSCLTSWQES-----EGQGCPF--CRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB--CCEEE-ETTCCEECHHHHHHHHHH-----TCSBCTT--TCCBCCEE
T ss_pred CCCCCccCcCC--CCeEE-eCCCChhhHHHHHHHHhc-----CCCCCCC--CCCccCCc
Confidence 36999999875 34444 499999999999999863 2348997 99887653
No 83
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.80 E-value=0.00058 Score=52.77 Aligned_cols=49 Identities=29% Similarity=0.581 Sum_probs=35.4
Q ss_pred ccccccceeccccccCCcee-ecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 306 TINETCVICLEDTDVGHMFS-IDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~-l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
....+|.||++... +... .++|||. ||..|+..+... ..+||. |+..+.
T Consensus 6 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT------TCCCTT--TCCCCC
T ss_pred CCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc------CCcCCC--cCcchh
Confidence 34678999998742 3322 2389999 899999988742 137997 988764
No 84
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.79 E-value=0.00043 Score=53.37 Aligned_cols=50 Identities=22% Similarity=0.579 Sum_probs=35.5
Q ss_pred ccccccceeccccccCCceeecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
.....|.||++.... -.+...+|||. ||..|...+... + .+||. |+..+.
T Consensus 5 ~~~~~C~IC~~~~~~-~~~~~~pCgH~~~C~~C~~~~~~~----~--~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD-GNIIHGRTGHLVTCFHCARRLKKA----G--ASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC-EEEEETTEEEEEECHHHHHHHHHT----T--CBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCC-eEEEecCCCCHhHHHHHHHHHHHh----C--CcCCC--cCchhh
Confidence 346799999986421 12223499998 999999987642 2 47997 988774
No 85
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.76 E-value=0.00024 Score=61.91 Aligned_cols=52 Identities=19% Similarity=0.510 Sum_probs=0.8
Q ss_pred cccccceeccccccCC---------------ceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchh
Q 008441 307 INETCVICLEDTDVGH---------------MFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVE 366 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~---------------~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~ 366 (565)
...+|.||++.+...- .+...+|+|.||..|+..|+..+ ..||. |+..+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~------~~CP~--Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPL--DNREWEFQ 113 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC------CcCCC--CCCeeeee
Confidence 3468999999875321 22234899999999999999753 27996 88876543
No 86
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.45 E-value=0.00083 Score=54.26 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=33.0
Q ss_pred ccccceeccccccCCceeecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
...|.||++.. .+++. ++|||. ||..|+..+ ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~-~pCgH~~~C~~C~~~~----------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTF-CPCGHTVCCESCAAQL----------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEE-ETTCBCCBCHHHHTTC----------SBCTT--TCCBCCE
T ss_pred CCEeEEeCccc--CcEEE-ECCCCHHHHHHHHHhc----------CcCCC--CCchhhC
Confidence 46899999874 34444 499999 999999754 28997 9987754
No 87
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.74 E-value=0.0029 Score=65.39 Aligned_cols=43 Identities=26% Similarity=0.668 Sum_probs=34.1
Q ss_pred cccccceeccccccCCceeecCCCcc-cchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHR-YCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~-fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
....|+||++.+ .+++.+ +|||. ||..|+..+ ..||. |+..+.
T Consensus 294 ~~~~C~IC~~~~--~~~v~l-pCgH~~fC~~C~~~~----------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFI-PCGHLVVCQECAPSL----------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEE-TTCCEEECTTTGGGC----------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcC--CceEEc-CCCChhHhHHHHhcC----------CcCCC--CCCCcc
Confidence 357899999875 455555 99999 999999865 48997 988765
No 88
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.71 E-value=0.0068 Score=48.24 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=38.3
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
...+|.||++.+...+ ....|+|.|...|+.+||+.+ ....||. |+..+..
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~----~~~~CP~--Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSN----AEPRCPH--CNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTC----SSCCCTT--TCSCCCS
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhc----CCCCCCC--CcCcCCC
Confidence 4579999999876433 344899999999999999532 1247997 8887653
No 89
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.69 E-value=0.0071 Score=61.68 Aligned_cols=58 Identities=21% Similarity=0.460 Sum_probs=41.8
Q ss_pred ccccccceecccccc-CCce----eecCCCcccchhhHHHHHHHHHhCCCC---C--CCCCCCCCCccch
Q 008441 306 TINETCVICLEDTDV-GHMF----SIDGCLHRYCFLCMKKHIEEKLRQGME---P--TCPHEGCKSKLEV 365 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~-~~~~----~l~~C~H~fC~~Cl~~~i~~~i~~g~~---~--kCP~~~C~~~l~~ 365 (565)
....+|+|||+.+.. ..+. ....|+|.|...|+..|+...-..... + .||. |+..++-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 456799999998754 2121 134799999999999999876543322 1 7997 9998874
No 90
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.48 E-value=0.011 Score=45.15 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=38.2
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhH
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESC 368 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i 368 (565)
.+.|+||++.+ .+++....|||.|++.|+.+|+... + +||. .+..|...++
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~---~cP~--t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G---NDPI--TNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S---BCTT--TCCBCCGGGC
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C---CCcC--CcCCCChhhc
Confidence 47899999875 4666554899999999999999753 3 5997 6677765543
No 91
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.07 E-value=0.0094 Score=49.99 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=25.2
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHH
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKK 340 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~ 340 (565)
...|+||.+.+...-....+.|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 468999997643333444469999999999997
No 92
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.85 E-value=0.06 Score=40.91 Aligned_cols=38 Identities=32% Similarity=0.819 Sum_probs=31.1
Q ss_pred CcccccCCCCCCcccchhhhhccCCCcccccccCceeCCC--CCCceecccCCCc
Q 008441 393 EKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTK--CHRRFCIDCKVPW 445 (565)
Q Consensus 393 ~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~--C~~~fC~~C~~~~ 445 (565)
+.+.|| +|+..+.+ ...-+.+.|.. |+..||+.|..+|
T Consensus 5 ~~k~CP--~C~~~Iek-------------~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEK-------------DGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSS-------------CCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEe-------------CCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 456787 99998853 34678899988 9999999999988
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.77 E-value=0.073 Score=44.44 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=24.7
Q ss_pred ccceeccccccCCceeecCCCcccchhhHHHHHHH
Q 008441 310 TCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEE 344 (565)
Q Consensus 310 ~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~ 344 (565)
.|.+|- ++...-..+.+|.|.||.+|...|.+.
T Consensus 3 fC~~C~--~Pi~iygRmIPCkHvFCydCa~~~~~~ 35 (101)
T 3vk6_A 3 FCDKCG--LPIKVYGRMIPCKHVFCYDCAILHEKK 35 (101)
T ss_dssp BCTTTC--SBCSEEEEEETTCCEEEHHHHHHHHHT
T ss_pred ecCccC--CCeEEEeeeccccccHHHHHHHHHHhc
Confidence 578886 333444456799999999999988754
No 94
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.14 E-value=0.51 Score=37.48 Aligned_cols=50 Identities=26% Similarity=0.575 Sum_probs=36.0
Q ss_pred cccccccceeccccccCCceeecC-CCcccchhhHHHHHHHHHhCCCCCCCC
Q 008441 305 KTINETCVICLEDTDVGHMFSIDG-CLHRYCFLCMKKHIEEKLRQGMEPTCP 355 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~-C~H~fC~~Cl~~~i~~~i~~g~~~kCP 355 (565)
......|.+|.+..+...++.... =.|.||..|-+.+|+.+-..+.+ .||
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~Ev-yCP 62 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEV-YCP 62 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCC-CCT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcE-ECC
Confidence 345689999998877666664321 26999999999999987654433 444
No 95
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.95 E-value=0.2 Score=37.83 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=34.8
Q ss_pred cccccceeccccccCCceeecCCC--c---ccchhhHHHHHHHHHhCCCCCCCCCCCCCCccc
Q 008441 307 INETCVICLEDTDVGHMFSIDGCL--H---RYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLE 364 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~--H---~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~ 364 (565)
....|-||+++... .+ +.+|. | .|...||.+|+..+- ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~~-~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~----~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGN-ER--FRACGCTGELENVHRSCLSTWLTISR----NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSC-CC--CCSCCCSSGGGSCCHHHHHHHHHHHT----CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCCC-ce--ecCcCCCCchhhhHHHHHHHHHHhCC----CCccCC--CCCeee
Confidence 45689999987432 22 34655 4 899999999997542 247997 887765
No 96
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.61 E-value=0.076 Score=40.06 Aligned_cols=41 Identities=29% Similarity=0.714 Sum_probs=30.0
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCC-CCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNK-KATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~-~~~c~C~~ 523 (565)
..||-|...+. +-++-.|||.||+.|...|... +..-.||+
T Consensus 21 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CBCTTTCSBCS-----SCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred CCCCcCCchhC-----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 57999987765 2345589999999999999753 22346764
No 97
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.24 E-value=0.12 Score=40.03 Aligned_cols=41 Identities=29% Similarity=0.714 Sum_probs=30.2
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCC-CCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNK-KATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~-~~~c~C~~ 523 (565)
..||-|...+. +-++-.|||.||+.|...|... ...-.||+
T Consensus 21 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (73)
T ss_dssp CBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred CEeccCCcccC-----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence 58999988765 3444579999999999999863 22346665
No 98
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=88.57 E-value=0.14 Score=45.42 Aligned_cols=37 Identities=35% Similarity=0.865 Sum_probs=29.0
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATC 519 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c 519 (565)
-.||-|.-.+. +-++..|||.||+.|...|...+.+|
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~~~~~~C 90 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWMKRKIEC 90 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHTTTCSBC
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHHHcCCcC
Confidence 36999988764 23555799999999999998776654
No 99
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=88.35 E-value=0.086 Score=41.34 Aligned_cols=42 Identities=19% Similarity=0.551 Sum_probs=31.2
Q ss_pred cccCCCCceeEecCCcceEEee-cCccccccccccccCCCCCcCCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHEFCYNCGAEWKNKKATCSCPLW 524 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~FCw~C~~~~~~~~~~c~C~~~ 524 (565)
-.||-|...+. +-++-. |||.||+.|...|....+.-.||+=
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C 58 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHHHSSSSCCSSS
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCC
Confidence 57999987765 346666 9999999999999865433456653
No 100
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=87.76 E-value=0.086 Score=44.01 Aligned_cols=34 Identities=21% Similarity=0.695 Sum_probs=28.1
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKK 516 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~ 516 (565)
-.||-|.-.+. +-++| .|||.||+.|...|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHHHC
Confidence 47999998886 45776 599999999999997655
No 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.44 E-value=0.16 Score=39.25 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=29.2
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.. -++-.|||.||+.|...|...+. .||+
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~--~CP~ 54 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLGK--RCAL 54 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCSS--BCSS
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCCC--cCcC
Confidence 579999877642 25557999999999999986654 4554
No 102
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=87.10 E-value=0.16 Score=39.92 Aligned_cols=33 Identities=24% Similarity=0.613 Sum_probs=26.2
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNK 515 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~ 515 (565)
-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHh
Confidence 579999887643 344479999999999998865
No 103
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=87.01 E-value=0.095 Score=42.74 Aligned_cols=41 Identities=20% Similarity=0.572 Sum_probs=30.0
Q ss_pred cccCCCCceeEecCCcceEEee-cCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|.-.+. +-++-. |||.||+.|...|-...+...||.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~ 55 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALLESDEHTCPT 55 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHHHHHCTTCCCTT
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHHHHhcCCCcCcC
Confidence 47999997765 345666 999999999998864433345664
No 104
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=86.77 E-value=0.15 Score=40.79 Aligned_cols=44 Identities=23% Similarity=0.613 Sum_probs=29.2
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|.-++... .-..+.|.|||.||..|...+... ....||.
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~ 55 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTD-ENGLCPA 55 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTT
T ss_pred CcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhc-CCCCCCC
Confidence 5799999877432 223344789999999999876432 2334554
No 105
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=86.15 E-value=0.19 Score=42.41 Aligned_cols=37 Identities=27% Similarity=0.580 Sum_probs=29.6
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCc
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATC 519 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c 519 (565)
-.||-|...+. +-++. .|||.||+.|...|...+..|
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~~~C 53 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLETSKYC 53 (108)
T ss_dssp TBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHTSCSBC
T ss_pred CCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHHhCCcC
Confidence 57999988775 35777 799999999999998765443
No 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=86.01 E-value=0.18 Score=41.80 Aligned_cols=36 Identities=22% Similarity=0.597 Sum_probs=28.6
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKAT 518 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~ 518 (565)
-.||-|...+.. -++. .|||.||+.|...|...+..
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~ 59 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYKTQ 59 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTCCB
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCCCC
Confidence 479999887753 4566 69999999999999876544
No 107
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.84 E-value=0.12 Score=41.50 Aligned_cols=45 Identities=20% Similarity=0.464 Sum_probs=30.7
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCC-CCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKK-ATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~-~~c~C~~ 523 (565)
..||-|...+..... .-+.-.|||.||+.|...|.... ..-.||+
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 61 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLLHCGHTICRQCLEKLLASSINGVRCPF 61 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHHHHHCSSCBCCTT
T ss_pred CCCccCCccccccCC-CeEECCCCChhhHHHHHHHHHcCCCCcCCCC
Confidence 579999887764321 12344799999999999997554 2235664
No 108
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=85.83 E-value=0.18 Score=36.72 Aligned_cols=42 Identities=33% Similarity=0.699 Sum_probs=30.6
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.... ..+.- .|||.||..|...|..... .||+
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~ 48 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSHS--TCPL 48 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTCC--SCSS
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcCC--cCcC
Confidence 57999988776433 23444 4999999999999987655 4664
No 109
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.97 E-value=0.2 Score=36.74 Aligned_cols=41 Identities=27% Similarity=0.824 Sum_probs=28.7
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCC-CCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNK-KATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~-~~~c~C~~ 523 (565)
..||-|...+... ++-.|||.||+.|...|-.. ...-.||+
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 5799998877532 33469999999999999432 22335663
No 110
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=84.59 E-value=0.12 Score=39.84 Aligned_cols=41 Identities=24% Similarity=0.503 Sum_probs=29.7
Q ss_pred cccCCCCceeEec--CCcceEEeecCccccccccccccCCCCC
Q 008441 478 RQCVKCNHLIELA--EGCFHMTCRCGHEFCYNCGAEWKNKKAT 518 (565)
Q Consensus 478 k~CPkC~~~IEK~--~GCnHMtC~Cg~~FCw~C~~~~~~~~~~ 518 (565)
..||-|...+... .|-.-+.-.|||.||+.|...|...+.+
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~ 53 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 53 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSB
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCC
Confidence 5799999887653 2322234479999999999999766554
No 111
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=84.39 E-value=0.21 Score=43.18 Aligned_cols=40 Identities=30% Similarity=0.632 Sum_probs=28.6
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|.-.+. +-++-.|||.||..|...|-..+. ..||+
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~ 92 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSFRAQV-FSCPA 92 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHHTTC-CBCTT
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHHhHCc-CCCCC
Confidence 47999988765 334557999999999998875332 24553
No 112
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.33 E-value=0.22 Score=37.90 Aligned_cols=40 Identities=28% Similarity=0.667 Sum_probs=28.6
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.. -++-.|||.||+.|...|... ..-.||+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~ 55 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQTECGHRFCESCMAALLSS-SSPKCTA 55 (66)
T ss_dssp EECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHTT-SSCCCTT
T ss_pred CCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHHh-CcCCCCC
Confidence 579999887652 233369999999999999842 2235664
No 113
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=84.32 E-value=0.22 Score=40.63 Aligned_cols=42 Identities=26% Similarity=0.537 Sum_probs=30.3
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.... ..++-.|||.||+.|...|.....+ ||+
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~~~--CP~ 82 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKSGT--CPV 82 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTTCB--CTT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcCCc--CcC
Confidence 57999987775433 2233369999999999999876654 554
No 114
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.17 E-value=0.37 Score=37.82 Aligned_cols=42 Identities=26% Similarity=0.615 Sum_probs=29.3
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.... .-+.-.|||.||+.|...|...+.+ ||+
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~--CP~ 57 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQHDS--CPV 57 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTTCS--CTT
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcCCc--CcC
Confidence 57999987765332 1222259999999999999866554 554
No 115
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=83.69 E-value=0.23 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=27.5
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNK 515 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~ 515 (565)
-.||-|...+. +-++. .|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeCCCCChhHHHHHHHHHHh
Confidence 47999988876 35777 79999999999999765
No 116
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.35 E-value=0.17 Score=39.32 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=29.2
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.. -++- .|||.||+.|...|..... .||+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~--~CP~ 55 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYYSN--RCPK 55 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHHCS--SCTT
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHcCC--cCCC
Confidence 579999877753 4555 6999999999999975544 4554
No 117
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.99 E-value=0.32 Score=37.28 Aligned_cols=36 Identities=25% Similarity=0.788 Sum_probs=27.9
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATC 519 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c 519 (565)
..||-|...+.. +.-.|||.||+.|...|.....+|
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~~~~~C 51 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWSDRHRNC 51 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSSCCCSSC
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHHHCcCcC
Confidence 579999877643 444799999999999998755543
No 118
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.64 E-value=0.28 Score=37.50 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=30.3
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPLW 524 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~~ 524 (565)
..||-|...+... -..+.-.|||.||+.|...|...+.+ ||+-
T Consensus 15 ~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~--CP~C 57 (69)
T 2kiz_A 15 EKCTICLSILEEG--EDVRRLPCMHLFHQVCVDQWLITNKK--CPIC 57 (69)
T ss_dssp CSBTTTTBCCCSS--SCEEECTTSCEEEHHHHHHHHHHCSB--CTTT
T ss_pred CCCeeCCccccCC--CcEEEeCCCCHHHHHHHHHHHHcCCC--CcCc
Confidence 6799998776432 22333369999999999999766554 6653
No 119
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=82.12 E-value=0.91 Score=44.12 Aligned_cols=51 Identities=31% Similarity=0.582 Sum_probs=38.4
Q ss_pred ccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchh
Q 008441 308 NETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVE 366 (565)
Q Consensus 308 ~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~ 366 (565)
...|.||.+-+... .....|+|.|...|+..|++. ....+||. |+..++.+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~----~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQS----NAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTT----CSSCBCTT--TCCBCCSC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHh----CCCCCCCC--CCCCCCCC
Confidence 67999999876533 444469999999999999853 23358996 99887653
No 120
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=82.06 E-value=0.54 Score=39.89 Aligned_cols=40 Identities=28% Similarity=0.598 Sum_probs=28.2
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|...+.. -++=.|||.||+.|...|...+. -.||+
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~ 55 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEKAS-LCCPF 55 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCTTT-SBCTT
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhHCc-CCCCC
Confidence 479999877642 23337999999999999986532 24443
No 121
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.62 E-value=2.8 Score=36.41 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=24.9
Q ss_pred cccccceeccccccC-CceeecCCCcccchhhHHHH
Q 008441 307 INETCVICLEDTDVG-HMFSIDGCLHRYCFLCMKKH 341 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~-~~~~l~~C~H~fC~~Cl~~~ 341 (565)
....|.+|...|... .-+..-.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 456899999877532 22344589999999997653
No 122
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.39 E-value=0.39 Score=37.64 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=29.2
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|..... +-++-.|||.||..|...|-..+ .-.||.
T Consensus 9 ~~C~IC~~~~~-----~Pv~~~CgH~fc~~Ci~~~~~~~-~~~CP~ 48 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIVSTGQTYERSSIQKWLDAG-HKTCPK 48 (78)
T ss_dssp SSCTTTSCCCS-----SEEEETTTEEEEHHHHHHHHTTT-CCBCTT
T ss_pred CCCCCcccccc-----CCEEcCCCCeecHHHHHHHHHHC-cCCCCC
Confidence 47999988764 23555799999999999998652 224554
No 123
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.19 E-value=0.25 Score=39.10 Aligned_cols=41 Identities=24% Similarity=0.632 Sum_probs=29.4
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCC----CCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKK----ATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~----~~c~C~~ 523 (565)
-.||-|...+.. -++-.|||.||+.|...|.... ..-.||.
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 579999887643 2455799999999999886542 2345664
No 124
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.13 E-value=0.25 Score=39.15 Aligned_cols=36 Identities=22% Similarity=0.583 Sum_probs=27.4
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKAT 518 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~ 518 (565)
-.||-|...+.. -++-.|||.||+.|...|......
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~ 51 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRATPR 51 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHHCSB
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHCCCc
Confidence 579999887743 344469999999999999765443
No 125
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.98 E-value=0.37 Score=36.62 Aligned_cols=39 Identities=31% Similarity=0.762 Sum_probs=28.1
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.. -..- .|||.||+.|...|...+. .||+
T Consensus 6 ~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~ 45 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMALPCLHAFCYVCITRWIRQNP--TCPL 45 (68)
T ss_dssp CCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHHHHSC--STTT
T ss_pred CCCeeCCccccC-----CcEecCCCCeeHHHHHHHHHhCcC--cCcC
Confidence 579999887642 2233 5999999999999976554 4554
No 126
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.63 E-value=0.45 Score=36.85 Aligned_cols=42 Identities=26% Similarity=0.672 Sum_probs=30.4
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+..... .+...|+|.||+.|...|.....+ ||+
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~~~~~~--CP~ 57 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWLEVRKV--CPL 57 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHHHHCSB--CTT
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHHHcCCc--CCC
Confidence 589999988754432 233469999999999999866554 554
No 127
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=80.50 E-value=0.22 Score=37.21 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=29.6
Q ss_pred cccCCCCceeEecC-Ccce-EEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAE-GCFH-MTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~-GCnH-MtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.... +-.. +.-.|||.||..|...|..... .||+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~ 49 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPT 49 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS--BCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC--CCCC
Confidence 46888887765431 1122 3346999999999999976544 4553
No 128
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=79.73 E-value=0.82 Score=40.35 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCcccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCce
Q 008441 392 TEKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRF 437 (565)
Q Consensus 392 ~~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~f 437 (565)
....+|| .|++++.+.+- .......+.|+.|++..
T Consensus 22 ~~~~FCP--eCgNmL~pked---------~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCR--DCNNMLYPRED---------KENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCT--TTCCBCBCCBC---------TTTCCBCCBCSSSCCBC
T ss_pred cCCeeCC--CCCCEeeECcc---------CCCceeEEECCCCCCcE
Confidence 4578998 99999865421 11234568888887743
No 129
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.28 E-value=2.1 Score=34.30 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=21.4
Q ss_pred ccCCCCceeEecCCcceEEee-cC--ccccccccccccC
Q 008441 479 QCVKCNHLIELAEGCFHMTCR-CG--HEFCYNCGAEWKN 514 (565)
Q Consensus 479 ~CPkC~~~IEK~~GCnHMtC~-Cg--~~FCw~C~~~~~~ 514 (565)
.||.|+.++|+ |+ || ..||-.|+.-..+
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEeec
Confidence 79999999987 53 66 6788888876553
No 130
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.99 E-value=0.25 Score=37.55 Aligned_cols=44 Identities=25% Similarity=0.575 Sum_probs=30.1
Q ss_pred cccCCCCceeEecC--CcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAE--GCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~--GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.... +-.-+.-.|||.||+.|...|..... .||+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~ 61 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPT 61 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS--SCTT
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC--CCCC
Confidence 57999988776542 22223336999999999999976544 4554
No 131
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=78.70 E-value=1.3 Score=35.79 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.4
Q ss_pred ccccCCCCceeEecCCcceEEe-ecCcccc
Q 008441 477 WRQCVKCNHLIELAEGCFHMTC-RCGHEFC 505 (565)
Q Consensus 477 ~k~CPkC~~~IEK~~GCnHMtC-~Cg~~FC 505 (565)
--.||.|+....+..+-..+.| .|++.|-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 3689999999999988889999 4999875
No 132
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.70 E-value=0.28 Score=38.81 Aligned_cols=33 Identities=30% Similarity=0.712 Sum_probs=25.3
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNK 515 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~ 515 (565)
..||-|...+.. -++-.|||.||..|...|...
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHHHH
Confidence 579999887753 233479999999999998543
No 133
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.55 E-value=0.4 Score=37.34 Aligned_cols=41 Identities=29% Similarity=0.730 Sum_probs=29.9
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+.... .+.. .|||.||+.|...|..... .||+
T Consensus 24 ~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~~~--~CP~ 65 (75)
T 1x4j_A 24 TLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLKANR--TCPI 65 (75)
T ss_dssp CEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHHHCS--SCTT
T ss_pred CCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHHcCC--cCcC
Confidence 57999998776433 3333 5999999999999976554 4665
No 134
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=77.45 E-value=0.27 Score=42.17 Aligned_cols=40 Identities=25% Similarity=0.646 Sum_probs=28.9
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|...+.. -++..|||.||+.|...|...... .||+
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~-~CP~ 58 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAGH-KCPV 58 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHCS-BCTT
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhhCCC-CCCC
Confidence 579999987753 355579999999999998654431 4553
No 135
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.39 E-value=0.72 Score=36.70 Aligned_cols=43 Identities=28% Similarity=0.694 Sum_probs=29.3
Q ss_pred ccCCCCceeEe----------cCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 479 QCVKCNHLIEL----------AEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 479 ~CPkC~~~IEK----------~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
.|+-|...++. .+.+..+.-.|||.|+..|...|...+.+ ||+
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~--CP~ 69 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR--CPL 69 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCB--CTT
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCC--CCC
Confidence 45555555543 34455555579999999999999877654 554
No 136
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.97 E-value=0.43 Score=40.09 Aligned_cols=41 Identities=34% Similarity=0.745 Sum_probs=28.8
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCC-CcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKA-TCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~-~c~C~~ 523 (565)
-.||-|...+.. -++-.|||.||+.|...|..... ...||.
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 63 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCCCCCCCcC
Confidence 479999887642 23346999999999999876432 234554
No 137
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.40 E-value=1.4 Score=32.03 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=19.0
Q ss_pred ccccCCCCceeEecCCcceEEe-ecCccc
Q 008441 477 WRQCVKCNHLIELAEGCFHMTC-RCGHEF 504 (565)
Q Consensus 477 ~k~CPkC~~~IEK~~GCnHMtC-~Cg~~F 504 (565)
.+.||+|+..+.-...=+.+.| +||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4899999974433322277899 598754
No 138
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=76.05 E-value=0.84 Score=33.88 Aligned_cols=27 Identities=37% Similarity=0.675 Sum_probs=19.9
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEF 504 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~F 504 (565)
+.||+|+..+.-...-+.++| +|++.+
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 789999985543334468999 699875
No 139
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.51 E-value=1.2 Score=38.04 Aligned_cols=32 Identities=25% Similarity=0.730 Sum_probs=25.4
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKN 514 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~ 514 (565)
-.||-|...+.. -++- .|||.||+.|...|..
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc
Confidence 579999877742 3444 7999999999999975
No 140
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.51 E-value=0.64 Score=35.03 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=22.5
Q ss_pred cccCCCCc-eeEecCCcceEEeecCcccccccccccc
Q 008441 478 RQCVKCNH-LIELAEGCFHMTCRCGHEFCYNCGAEWK 513 (565)
Q Consensus 478 k~CPkC~~-~IEK~~GCnHMtC~Cg~~FCw~C~~~~~ 513 (565)
..||-|.. .+....- ..+.=.|||.||+.|...|.
T Consensus 4 ~~C~IC~~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSL-KLMVNVCGHTLCESCVDLLF 39 (65)
T ss_dssp TCCSTTTTHHHHCSSC-CEEECTTCCCEEHHHHHHHH
T ss_pred CcCCcCCCCccCCCcc-CeecCCCCCHhHHHHHHHHH
Confidence 36888887 4432210 01233699999999999983
No 141
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=74.35 E-value=0.59 Score=33.75 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=29.1
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
..||-|...+...+ ..+.- .|||.||+.|...|..... .||+
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~ 48 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLKEGY--RCPL 48 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHHHTC--CCTT
T ss_pred CcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHHcCC--cCCC
Confidence 57999987764321 23444 5999999999999976553 4554
No 142
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=74.19 E-value=0.55 Score=39.13 Aligned_cols=30 Identities=33% Similarity=0.777 Sum_probs=19.5
Q ss_pred ccCCCCceeEecCCcceEEe-ecCcccccccccccc
Q 008441 479 QCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWK 513 (565)
Q Consensus 479 ~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~ 513 (565)
-||+|..+|---+- - .|+|-|||.|-..|.
T Consensus 3 fC~~C~~Pi~iygR-----mIPCkHvFCydCa~~~~ 33 (101)
T 3vk6_A 3 FCDKCGLPIKVYGR-----MIPCKHVFCYDCAILHE 33 (101)
T ss_dssp BCTTTCSBCSEEEE-----EETTCCEEEHHHHHHHH
T ss_pred ecCccCCCeEEEee-----eccccccHHHHHHHHHH
Confidence 59999999864331 1 266666777766654
No 143
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=73.13 E-value=0.78 Score=41.22 Aligned_cols=40 Identities=30% Similarity=0.601 Sum_probs=29.0
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|.-.+. +-++-.|||.||+.|...|..... ..||.
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~ 118 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRSFKAQV-FSCPA 118 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHHTTC-CBCTT
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHHHHhCC-CcCCC
Confidence 47999987764 345557999999999999876532 24554
No 144
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=73.10 E-value=1.8 Score=33.59 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.7
Q ss_pred cccCCCCceeEecCCcceEEee-cCccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHEF 504 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~F 504 (565)
-.||.|+...+...+...++|. ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899999999998888888884 65543
No 145
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=72.61 E-value=0.63 Score=41.39 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=27.1
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKK 516 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~ 516 (565)
-.||-|...+. +-++..|||.||+.|...|-..+
T Consensus 32 ~~C~IC~~~~~-----~pv~~~CgH~FC~~Ci~~~~~~~ 65 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQAQCGHRYCSFCLASILSSG 65 (141)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHGGGS
T ss_pred cCCCCCChhhc-----CcEECCCCCccCHHHHHHHHhcC
Confidence 47999988775 33666899999999999997543
No 146
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=72.43 E-value=2.2 Score=34.13 Aligned_cols=34 Identities=24% Similarity=0.733 Sum_probs=27.6
Q ss_pred cccCCCCceeEecCCcceEEe-ecCcc-----cccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHE-----FCYNCGAEWK 513 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~-----FCw~C~~~~~ 513 (565)
..||.|+..++.++| +.+| .|+.. ||-.|+++..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHH
Confidence 579999999999888 6678 48743 7999998864
No 147
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.07 E-value=3.1 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=20.9
Q ss_pred cccCCCCc-eeEecCCcceEEee-cCccc
Q 008441 478 RQCVKCNH-LIELAEGCFHMTCR-CGHEF 504 (565)
Q Consensus 478 k~CPkC~~-~IEK~~GCnHMtC~-Cg~~F 504 (565)
..||.|+. .+..+..=..+.|. ||.-|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 57999998 78777766778884 87643
No 148
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=71.21 E-value=0.72 Score=39.17 Aligned_cols=40 Identities=25% Similarity=0.575 Sum_probs=28.9
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|...+. +-++-.|||.||+.|...|..... -.||.
T Consensus 24 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~ 63 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVETSCKHLFCRICILRCLKVMG-SYCPS 63 (116)
T ss_dssp TBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHHHHTC-SBCTT
T ss_pred CCCCCCCcHhc-----CcEEcCCCCcccHHHHHHHHhHCc-CcCCC
Confidence 47999988775 235557999999999999876422 24554
No 149
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=70.93 E-value=0.62 Score=38.24 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=35.2
Q ss_pred CcccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccch
Q 008441 304 GKTINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEV 365 (565)
Q Consensus 304 ~~~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~ 365 (565)
.-...+.|-.|+-. ...++. ...|..|..|+...+.+ .-.||. |+..|+-
T Consensus 24 s~~G~~nCKsCWf~--~k~LV~--C~dHYLCl~CLtlmL~~------SdrCpI--C~~pLPt 73 (99)
T 2ko5_A 24 THLGPQFCKSCWFE--NKGLVE--CNNHYLCLNCLTLLLSV------SNRCPI--CKMPLPT 73 (99)
T ss_dssp CCSCCCCCCSSCSC--CSSEEE--CSSCEEEHHHHHHTCSS------SSEETT--TTEECCC
T ss_pred cccCcccChhhccc--cCCeee--ecchhhHHHHHHHHHhh------ccCCcc--cCCcCCc
Confidence 44457899999944 455543 35799999999876632 237987 9888764
No 150
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.34 E-value=1.4 Score=34.67 Aligned_cols=29 Identities=31% Similarity=0.801 Sum_probs=23.6
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGA 510 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~ 510 (565)
.+|..|+..+...+ +.|+||..||-.-.-
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy 54 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGLHRY 54 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSSSCS
T ss_pred CcChhhCCcccccC----eecCCCCEechhcCC
Confidence 58999999988763 899999999965433
No 151
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.58 E-value=1.3 Score=33.32 Aligned_cols=23 Identities=35% Similarity=0.944 Sum_probs=19.5
Q ss_pred ceeCCCCCCceecccCCCcCCCC
Q 008441 427 ARKCTKCHRRFCIDCKVPWHNNM 449 (565)
Q Consensus 427 ~~~C~~C~~~fC~~C~~~~H~g~ 449 (565)
...|+.|+..||..|-.-.|..+
T Consensus 30 ~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 30 VYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EECCTTTTCCBCHHHHHTTTTTS
T ss_pred cEECCccCcCcccchhHHHHhhc
Confidence 36899999999999988878654
No 152
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=69.37 E-value=3.2 Score=34.19 Aligned_cols=34 Identities=29% Similarity=0.932 Sum_probs=28.3
Q ss_pred cccCCCCceeEecCCcceEEe-ecCcc-----cccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHE-----FCYNCGAEWK 513 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~-----FCw~C~~~~~ 513 (565)
..||.|+..++.++| +.+| .|+.. ||-.|+++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHH
Confidence 689999999999988 7779 48765 5888988765
No 153
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=68.66 E-value=1 Score=38.82 Aligned_cols=32 Identities=31% Similarity=0.833 Sum_probs=0.0
Q ss_pred cCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 490 AEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 490 ~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
.+.|.-+.-.|+|.|+..|...|...+.+ ||+
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~--CP~ 105 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLKTRQV--CPL 105 (117)
T ss_dssp ----------------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHHcCCc--CCC
Confidence 34577777789999999999999877654 554
No 154
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.98 E-value=1.6 Score=33.28 Aligned_cols=30 Identities=30% Similarity=0.806 Sum_probs=23.8
Q ss_pred cccCCCCceeEecCCcceEEeecCcccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAE 511 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~ 511 (565)
.+|..|+..+... -+.|+||..||-.-.-+
T Consensus 16 ~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~ 45 (64)
T 1wfh_A 16 NRCTVCRKRVGLT----GFMCRCGTTFCGSHRYP 45 (64)
T ss_dssp CCCTTTCCCCCTT----CEECSSSCEECTTTCST
T ss_pred CcChhhCCccCcc----CEEeecCCEeccccCCc
Confidence 6899999988766 38899999999664433
No 155
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=66.65 E-value=1.5 Score=36.95 Aligned_cols=31 Identities=32% Similarity=0.848 Sum_probs=23.8
Q ss_pred CCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 491 EGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 491 ~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
++|.-+.-.|+|.|+..|...|...+.+ ||+
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~--CP~ 94 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKTRQV--CPL 94 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTTCSB--CSS
T ss_pred ccceEeecccCcEECHHHHHHHHHcCCc--CcC
Confidence 4566666689999999999999877654 554
No 156
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=66.43 E-value=0.72 Score=42.06 Aligned_cols=40 Identities=25% Similarity=0.646 Sum_probs=29.7
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|...+.. -+++.||+.||..|...|...... .||.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~-~CP~ 58 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAGH-KCPV 58 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHCS-BCTT
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHHhCCC-CCCC
Confidence 479999988763 367789999999999998643321 4553
No 157
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.43 E-value=1.9 Score=32.91 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=23.3
Q ss_pred cccCCCCceeEecCCcceEEeecCcccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAE 511 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~ 511 (565)
.+|..|+..+... -+.|+||..||-.-.-+
T Consensus 16 ~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~ 45 (64)
T 1wg2_A 16 NRCFSCNKKVGVM----GFKCKCGSTFCGSHRYP 45 (64)
T ss_dssp CSCTTTCCCCTTS----CEECTTSCEECSSSCSS
T ss_pred CcChhhCCccccc----CeEeecCCEecccCCCc
Confidence 6899999887655 38899999999654433
No 158
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=63.00 E-value=3.4 Score=41.65 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=9.4
Q ss_pred CceecccCCCcCCC
Q 008441 435 RRFCIDCKVPWHNN 448 (565)
Q Consensus 435 ~~fC~~C~~~~H~g 448 (565)
+.+|..|...||..
T Consensus 208 ~l~Cs~C~t~W~~~ 221 (309)
T 2fiy_A 208 YLSCSLCACEWHYV 221 (309)
T ss_dssp EEEETTTCCEEECC
T ss_pred EEEeCCCCCEEeec
Confidence 34567777788764
No 159
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.12 E-value=5 Score=30.65 Aligned_cols=34 Identities=29% Similarity=0.617 Sum_probs=26.1
Q ss_pred cccccccceeccccccCCceeecCC-CcccchhhHHHHH
Q 008441 305 KTINETCVICLEDTDVGHMFSIDGC-LHRYCFLCMKKHI 342 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~~~~~l~~C-~H~fC~~Cl~~~i 342 (565)
.....-|.||.++- .+....| +-.||..||+..-
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHHc
Confidence 34456899999873 2556799 7899999999764
No 160
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=60.88 E-value=3.2 Score=33.48 Aligned_cols=31 Identities=32% Similarity=0.817 Sum_probs=23.7
Q ss_pred ccccCCCCceeEecCCcceEEeecCccccccccc
Q 008441 477 WRQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGA 510 (565)
Q Consensus 477 ~k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~ 510 (565)
..+|..|+..+-.. +-+.|+||..||-.-.-
T Consensus 25 ~~rC~~C~kkvgl~---~~f~CrCg~~FC~~HRy 55 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECRCGNNFCASHRY 55 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECTTCCEECTTTCS
T ss_pred CccchhhCCeeccc---CCeEcCCCCEecccCCC
Confidence 36899999887654 34899999999965443
No 161
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.68 E-value=1.4 Score=37.14 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=25.4
Q ss_pred cccCCCCceeEecCCc------------ceEEe-ecCcccccccccccc
Q 008441 478 RQCVKCNHLIELAEGC------------FHMTC-RCGHEFCYNCGAEWK 513 (565)
Q Consensus 478 k~CPkC~~~IEK~~GC------------nHMtC-~Cg~~FCw~C~~~~~ 513 (565)
..||-|.-.++...+. ..+.- .|+|.||..|+..|.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 4799998887543321 11223 599999999999997
No 162
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=60.34 E-value=4.2 Score=42.23 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=25.0
Q ss_pred ccccCCCCceeEecCCcceEEeecCccccccccccccC
Q 008441 477 WRQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKN 514 (565)
Q Consensus 477 ~k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~ 514 (565)
...||-|..... +-+.-.|||.||+.|...|..
T Consensus 332 ~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh
Confidence 368999976652 223336999999999999975
No 163
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.86 E-value=1.9 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.637 Sum_probs=28.8
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCc
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATC 519 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c 519 (565)
+.|-.|...+...+ -..| +|+..||..|-.-....-++|
T Consensus 16 ~~C~~C~~~~~~~~---~y~C~~C~~~FC~dCD~fiHe~Lh~C 55 (59)
T 1z60_A 16 RFCYGCQGELKDQH---VYVCAVCQNVFCVDCDVFVHDSLHSC 55 (59)
T ss_dssp CEETTTTEECTTSE---EECCTTTTCCBCHHHHHTTTTTSCSS
T ss_pred CcccccCcccCCCc---cEECCccCcCcccchhHHHHhhccCC
Confidence 46999999884322 2679 699999999998876555544
No 164
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.68 E-value=3.2 Score=32.54 Aligned_cols=28 Identities=32% Similarity=0.954 Sum_probs=22.8
Q ss_pred cccCCCCceeEecCCcceEEeecCcccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCG 509 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~ 509 (565)
.+|..|+..+... -+.|+||..||-.-.
T Consensus 26 ~RC~~C~kkvgL~----~f~CrCg~~FCs~HR 53 (74)
T 1wfp_A 26 TRCLSCNKKVGVT----GFKCRCGSTFCGTHR 53 (74)
T ss_dssp CBCSSSCCBCTTT----CEECTTSCEECTTTC
T ss_pred ccchhhcCccccc----ceEeccCCEeccccC
Confidence 6899999888766 489999999996543
No 165
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=54.11 E-value=5 Score=32.55 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=25.9
Q ss_pred cccCceeCCCCCCceecccCCCcCCCCChhhHhhhCCCCChhHHHHHHHHhcCCccccCCCCceeE
Q 008441 423 RRLGARKCTKCHRRFCIDCKVPWHNNMTCIYYKRLNPNPPTEDVKLKSLASSNLWRQCVKCNHLIE 488 (565)
Q Consensus 423 ~~~~~~~C~~C~~~fC~~C~~~~H~g~tC~e~~~~~~~~~~ed~~l~~l~~~~~~k~CPkC~~~IE 488 (565)
.....+-|..|++..|.. |.+|.+ +.+.+-||+|+..+.
T Consensus 31 ~Ge~FVAC~eC~FPvCrp----------CyEYEr-----------------keG~q~CpqCktrYk 69 (93)
T 1weo_A 31 EGDLFVACNECGFPACRP----------CYEYER-----------------REGTQNCPQCKTRYK 69 (93)
T ss_dssp SSSBCCSCSSSCCCCCHH----------HHHHHH-----------------HTSCSSCTTTCCCCC
T ss_pred CCCEEEeeeccCChhhHH----------HHHHHH-----------------hccCccccccCCccc
Confidence 445677888888888875 455543 233478999876654
No 166
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=54.03 E-value=10 Score=29.20 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=22.5
Q ss_pred cccCCCCceeEecCCcceEEeecCcc-ccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHE-FCYNCGAEW 512 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~-FCw~C~~~~ 512 (565)
..||-|..... +-++=.|||. ||+.|...|
T Consensus 25 ~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBC-----CEEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCC-----CEEEcCCCChhHHHHhhhcC
Confidence 57999986543 2233369999 999999998
No 167
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.62 E-value=43 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=31.6
Q ss_pred ccccceecccc------ccCCceeecCCCcccchhhHHH--HHHHHHhCCCCCCCCC
Q 008441 308 NETCVICLEDT------DVGHMFSIDGCLHRYCFLCMKK--HIEEKLRQGMEPTCPH 356 (565)
Q Consensus 308 ~~~C~IC~e~~------~~~~~~~l~~C~H~fC~~Cl~~--~i~~~i~~g~~~kCP~ 356 (565)
...|.+|+... ...+++....|+..|...|+.- -+...+..+.+ .||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W-~C~~ 60 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRW-QCIE 60 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCC-CCTT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcccc-cccc
Confidence 56899998753 2346777788999999999852 23334444433 5665
No 168
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=53.20 E-value=12 Score=35.51 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=36.8
Q ss_pred CCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCC
Q 008441 176 SLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMEL 226 (565)
Q Consensus 176 g~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~ 226 (565)
|.+.=|+.|+|++|.+.+....++ .+.+|..|...+|.+|+..-+.|.
T Consensus 140 g~~~R~tFiID~~G~Ir~~~v~~~---~~grn~dEiLr~l~AlQ~~~~~~~ 187 (216)
T 3sbc_A 140 GVALRGLFIIDPKGVIRHITINDL---PVGRNVDEALRLVEAFQWTDKNGT 187 (216)
T ss_dssp TEECEEEEEECTTSBEEEEEEECT---TBCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CceeeEEEEECCCCeEEEEEEcCC---CCCCCHHHHHHHHHHhhhHhhcCC
Confidence 445558999999997766555555 456689999999999998877774
No 169
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=51.77 E-value=7.9 Score=30.04 Aligned_cols=26 Identities=15% Similarity=0.338 Sum_probs=19.3
Q ss_pred cccCCCCceeEecCCcceEEee-cCcc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHE 503 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~ 503 (565)
-.||.|+...+...+=..++|. ||..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLA 35 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCce
Confidence 5799999999887665667773 5543
No 170
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=51.74 E-value=7.3 Score=30.06 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=19.2
Q ss_pred cccCCCCceeEecCCcceEEee-cCcc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHE 503 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~ 503 (565)
-.||.|+...+...+=..++|. ||..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 4799999999887665667773 5543
No 171
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=51.17 E-value=7.7 Score=30.02 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=19.0
Q ss_pred cccCCCCceeEecCCcceEEee-cCcc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHE 503 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~ 503 (565)
-.||.|+...+...+=..++|. ||..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLA 35 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 5799999998877655667773 5543
No 172
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.23 E-value=4.8 Score=39.50 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=31.4
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|..++. +-++. .|||.||-.|...|-..++...||.
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~~~~~~~~~CPv 223 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNYLQGYTTRDCPQ 223 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence 57999998874 56777 5999999999988765555556665
No 173
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=48.86 E-value=8.5 Score=35.87 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=21.4
Q ss_pred cccCCCCcee-EecCCcceEEe-ecCccccc
Q 008441 478 RQCVKCNHLI-ELAEGCFHMTC-RCGHEFCY 506 (565)
Q Consensus 478 k~CPkC~~~I-EK~~GCnHMtC-~Cg~~FCw 506 (565)
+.||+|+..+ .....+.| +| +|++.|+|
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred ccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 8999999653 44556666 99 79999875
No 174
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=46.60 E-value=21 Score=32.95 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=43.1
Q ss_pred cccceeccccccCC----ceeecCCCcccchhhHHHHHH--HHHh---CCCCCCCCCCCCCCccchhhHHHhhhhHHHHH
Q 008441 309 ETCVICLEDTDVGH----MFSIDGCLHRYCFLCMKKHIE--EKLR---QGMEPTCPHEGCKSKLEVESCRIFLTLKLFEI 379 (565)
Q Consensus 309 ~~C~IC~e~~~~~~----~~~l~~C~H~fC~~Cl~~~i~--~~i~---~g~~~kCP~~~C~~~l~~~~i~~lL~~e~~e~ 379 (565)
..|+||...+...+ ++....|...|...|..-.-. ..+. +.....||. |...-+. ..+..|..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~-~~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPA-EWRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSC-HHHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCH-HHHHHHHHHHHHH
Confidence 46999988776554 778889999999999863221 1221 112347986 7765543 3444455555444
Q ss_pred HHH
Q 008441 380 WNQ 382 (565)
Q Consensus 380 y~~ 382 (565)
+.+
T Consensus 80 l~~ 82 (183)
T 3lqh_A 80 LKQ 82 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 175
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.92 E-value=10 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.762 Sum_probs=21.6
Q ss_pred cccCCCCceeEec----CCcceEEee-cCccc
Q 008441 478 RQCVKCNHLIELA----EGCFHMTCR-CGHEF 504 (565)
Q Consensus 478 k~CPkC~~~IEK~----~GCnHMtC~-Cg~~F 504 (565)
+-||.|+.+.... .|.+.+.|+ |+|.+
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 6899999987554 268899995 99976
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.77 E-value=4.3 Score=39.43 Aligned_cols=40 Identities=10% Similarity=-0.072 Sum_probs=27.3
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|..... +-++-.|||.||..|...|-..++. .||.
T Consensus 209 ~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~~~~~-~cP~ 248 (281)
T 2c2l_A 209 LCGKISFELMR-----EPCITPSGITYDRKDIEEHLQRVGH-FNPV 248 (281)
T ss_dssp TBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHHHTCS-SCTT
T ss_pred cCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHHHCCC-CCcC
Confidence 46888876654 3344469999999999988754332 2664
No 177
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.24 E-value=8.7 Score=34.44 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=22.4
Q ss_pred cccCC--CCceeEecCCcceEEe-ecCcccccc
Q 008441 478 RQCVK--CNHLIELAEGCFHMTC-RCGHEFCYN 507 (565)
Q Consensus 478 k~CPk--C~~~IEK~~GCnHMtC-~Cg~~FCw~ 507 (565)
+.||+ |+.-+....-=+..+| +||+.|++.
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEESSSSSCCEEC
T ss_pred CcCCCccCCCceEecccCCCcccCCCceEEEec
Confidence 78999 9986554433367899 799998863
No 178
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=45.17 E-value=11 Score=32.49 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=22.2
Q ss_pred ccccCCCCceeEec----CCcceEEee-cCccc
Q 008441 477 WRQCVKCNHLIELA----EGCFHMTCR-CGHEF 504 (565)
Q Consensus 477 ~k~CPkC~~~IEK~----~GCnHMtC~-Cg~~F 504 (565)
.+-||.|+.++.-. .+-+.+.|+ |+|.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 47899999876643 568899995 99866
No 179
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.24 E-value=12 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=18.9
Q ss_pred cccCCCCceeEecCCcceEEee-cCcc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHE 503 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~ 503 (565)
-.||.|+.+.+....=+.+.|. ||..
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLA 37 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCcc
Confidence 5899999999887655567773 5443
No 180
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=43.23 E-value=5 Score=35.58 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 008441 376 LFEIWNQRM 384 (565)
Q Consensus 376 ~~e~y~~~~ 384 (565)
..+.|.+.+
T Consensus 49 A~ElFI~~L 57 (140)
T 2byk_A 49 CTELFVRHL 57 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 181
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.13 E-value=59 Score=28.69 Aligned_cols=50 Identities=22% Similarity=0.644 Sum_probs=35.5
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHH----HHH--hCCCCCCCCCCCCCCc
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIE----EKL--RQGMEPTCPHEGCKSK 362 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~----~~i--~~g~~~kCP~~~C~~~ 362 (565)
....|.+|.+. .+++....|...||..|+..-+. ..| ..+.+ .||. |...
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W-~C~~--C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQW-YCYI--CHPE 117 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCC-CCTT--TCCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCC-Eeec--ccCc
Confidence 35789999865 56777789999999999997663 233 23433 7886 6543
No 182
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=42.27 E-value=5.5 Score=31.65 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=14.0
Q ss_pred CCCCCCCCCccchhhH-HHhhh
Q 008441 353 TCPHEGCKSKLEVESC-RIFLT 373 (565)
Q Consensus 353 kCP~~~C~~~l~~~~i-~~lL~ 373 (565)
+||. |+..|...++ .+.|.
T Consensus 10 ~~Pl--CG~~L~W~eLIeQML~ 29 (95)
T 2k5c_A 10 KCPI--CGSPLKWEELIEEMLI 29 (95)
T ss_dssp ECSS--SCCEECHHHHHHHSTT
T ss_pred cCCc--CCCccCHHHHHHHHHh
Confidence 8997 9999998654 44444
No 183
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=42.21 E-value=8.5 Score=33.77 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=22.1
Q ss_pred CccccCCCCceeEec----CCcceEEee-cCccc
Q 008441 476 LWRQCVKCNHLIELA----EGCFHMTCR-CGHEF 504 (565)
Q Consensus 476 ~~k~CPkC~~~IEK~----~GCnHMtC~-Cg~~F 504 (565)
..+-||.|+.+.--. .+.+.+.|+ |+|.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 458999999986433 268899995 99965
No 184
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=41.39 E-value=11 Score=30.36 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=20.2
Q ss_pred cccCCCCce------eEecCCcceEEee-cCccc
Q 008441 478 RQCVKCNHL------IELAEGCFHMTCR-CGHEF 504 (565)
Q Consensus 478 k~CPkC~~~------IEK~~GCnHMtC~-Cg~~F 504 (565)
-.||.|++. +.|..|=-+++|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 579999875 3345677889994 88876
No 185
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=40.66 E-value=36 Score=32.30 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCCccchhhccCccCCcchhhHH
Q 008441 176 SLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFIDCFPLFQFVTGRWPAKQRKISV 255 (565)
Q Consensus 176 g~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS~lv~~qv~G~w~~k~~~l~~ 255 (565)
|.+.=|+.|+|++|.+.+....++ .+.+|..|....|.+|+.+-+.|.- .--.|++.++.|.+
T Consensus 144 g~~~R~tFiIDp~g~Ir~~~~~~~---~~gr~~~EvLr~l~aLQ~~~~~~~~--------------~Pa~W~~G~~~i~p 206 (219)
T 3tue_A 144 GVAYRGLFIIDPHGMLRQITVNDM---PVGRSVEEVLRLLEAFQFVEKHGEV--------------CPANWKKGDPGMKP 206 (219)
T ss_dssp TEECEEEEEECTTSBEEEEEEECT---TCCCCHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred CeeEEEEEEECCCCeEEEEEEecC---CCCCCHHHHHHHHHHhhhHHhcCCC--------------cCCCCCCCCccccC
Confidence 445558899999987765554555 4555899999999999988877740 11357777766654
No 186
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=40.49 E-value=13 Score=39.15 Aligned_cols=73 Identities=8% Similarity=-0.101 Sum_probs=46.0
Q ss_pred CceEEEEEccceeecccCCCCCCCceEEEEEEeCC---CCeEEEeeeeccccC--CChHHHHHHHHHHHHHHHHh-cCCC
Q 008441 154 DYFFKVYSKGLVIEELVNGERVSLSAIGVAICDQM---DNLIFELKKPLIKSG--LNKSAAETKALIEGLNAALS-MELD 227 (565)
Q Consensus 154 ~~~~~vyfdGa~~~~~~~~~npg~ag~Gv~i~~~~---~~~~~~~~~~~~~~~--tn~n~AEy~Ali~gL~~al~-l~~~ 227 (565)
+..+.||+|.+. . |+|+|+.... +.+|+-.++.+.... -+-...|+.|++.|++.... +--+
T Consensus 344 ~~~~~l~~DAS~-~-----------~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~ 411 (455)
T 1rw3_A 344 TKPFELFVDEKQ-G-----------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQ 411 (455)
T ss_dssp CCTTSCEEEEEE-C-----------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred CCcEEEEEeccC-C-----------cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 445789999743 1 1222343321 346777777772221 12258899999999988764 3337
Q ss_pred eEEeecCCccc
Q 008441 228 RVRVFIDCFPL 238 (565)
Q Consensus 228 ~v~v~~DS~lv 238 (565)
.+.|++|+.++
T Consensus 412 ~~~v~tDh~~~ 422 (455)
T 1rw3_A 412 PLVIKAPHAVE 422 (455)
T ss_dssp CEEEECSSCTT
T ss_pred cEEEEecChHH
Confidence 89999999843
No 187
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=39.91 E-value=75 Score=25.24 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=12.4
Q ss_pred HHhhHHHHHHhhccCC
Q 008441 39 FRLQLQEAISASLAHV 54 (565)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (565)
|-=+|+-||+.||--.
T Consensus 11 eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 11 EEELIRKAIELSLKES 26 (81)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhHHHH
Confidence 4457889999999863
No 188
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=39.16 E-value=15 Score=32.83 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=23.6
Q ss_pred cccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecc
Q 008441 394 KVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCID 440 (565)
Q Consensus 394 ~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~ 440 (565)
...||++.|+.-+. -+....+..|..|+..+++.
T Consensus 118 ~~~c~~~~cg~g~f-------------ma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVF-------------LANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSB-------------EEECSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceE-------------ecccCCCcccCCCceEEEec
Confidence 46899988986321 12234578999999988763
No 189
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=38.51 E-value=19 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=17.7
Q ss_pred cccCCCCceeEecCCcceEEee---cCcc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR---CGHE 503 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~---Cg~~ 503 (565)
-.||.|+...+... ..+.|. ||..
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLA 37 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcE
Confidence 58999999988777 566664 5543
No 190
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=36.71 E-value=46 Score=26.51 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=32.5
Q ss_pred CceecccCCCcCCCCChhhHhhhCCCCChhHHHHHHHHhcCCccccCCCCceeEecCCcceEEee--cCccccccccccc
Q 008441 435 RRFCIDCKVPWHNNMTCIYYKRLNPNPPTEDVKLKSLASSNLWRQCVKCNHLIELAEGCFHMTCR--CGHEFCYNCGAEW 512 (565)
Q Consensus 435 ~~fC~~C~~~~H~g~tC~e~~~~~~~~~~ed~~l~~l~~~~~~k~CPkC~~~IEK~~GCnHMtC~--Cg~~FCw~C~~~~ 512 (565)
..+|+.|...-|....|.+. .+|.+|+..-.... .|. =...+||.|++.=
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~-----------------------~rcY~c~~~gh~~~-----~c~~p~~~~~CYnCG~~G 56 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI-----------------------WRAYILVDDNEKAK-----PKVLPFHTIYCYNCGGKG 56 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG-----------------------TCCCCBC------------------CCCBCSSSSCBS
T ss_pred cCCCCCCCCCCCccccCCCc-----------------------ccccccccCCcccc-----cccCCCCCCeecccCCCC
Confidence 45788999999988888641 14666654311111 121 2457999999982
Q ss_pred cCCCCCcCCCCCC
Q 008441 513 KNKKATCSCPLWD 525 (565)
Q Consensus 513 ~~~~~~c~C~~~~ 525 (565)
|-.-.||...
T Consensus 57 ---H~~rdC~~~r 66 (83)
T 3nyb_B 57 ---HFGDDCKEKR 66 (83)
T ss_dssp ---SCGGGCSSCC
T ss_pred ---cCcccCCccc
Confidence 2233677533
No 191
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.70 E-value=5.3 Score=30.73 Aligned_cols=31 Identities=35% Similarity=0.799 Sum_probs=21.3
Q ss_pred cccCCCCceeEecCCcceEEeecCcccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCG 509 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~ 509 (565)
.+|-.|+..+...+ =.-+.|+||..||-.=.
T Consensus 16 ~rC~~C~kk~gL~~-~egf~CrCg~~FC~~HR 46 (67)
T 1x4w_A 16 RRCFQCQTKLELVQ-QELGSCRCGYVFCMLHR 46 (67)
T ss_dssp TBCSSSCCBCCHHH-HHHHCCSSSCCCCTTTC
T ss_pred CcchhhCCeecccc-cCceEecCCCEehhccC
Confidence 68999988876441 00157899999996543
No 192
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=36.50 E-value=6.5 Score=39.47 Aligned_cols=31 Identities=26% Similarity=0.744 Sum_probs=23.3
Q ss_pred cCCccccCCCCceeEecC-CcceEEe-ecCccc
Q 008441 474 SNLWRQCVKCNHLIELAE-GCFHMTC-RCGHEF 504 (565)
Q Consensus 474 ~~~~k~CPkC~~~IEK~~-GCnHMtC-~Cg~~F 504 (565)
+..|.+||+|+..+-..+ .=|...| .|+|++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 457999999999998874 3377788 488876
No 193
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=36.46 E-value=21 Score=23.78 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=18.7
Q ss_pred ccCCCCce---eEecCCcceEEee-cCcc
Q 008441 479 QCVKCNHL---IELAEGCFHMTCR-CGHE 503 (565)
Q Consensus 479 ~CPkC~~~---IEK~~GCnHMtC~-Cg~~ 503 (565)
.||.|+.+ +.+..+=..+.|. ||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 58999875 5555677788895 9875
No 194
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.07 E-value=5.8 Score=32.28 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=29.7
Q ss_pred cccCCCCceeEecCCcceEEe-ecCccccccccccccCCC----CCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHEFCYNCGAEWKNKK----ATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~FCw~C~~~~~~~~----~~c~C~~ 523 (565)
-.||-|..+.. +-++- .|||.||..|...|-..+ ....||.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~ 53 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQ 53 (94)
T ss_dssp CBCTTTCSBCS-----SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCS
T ss_pred eECcCcCchhc-----CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCc
Confidence 46999987765 46777 499999999999886532 2345665
No 195
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=35.84 E-value=7.7 Score=39.49 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=0.0
Q ss_pred CCCCccccccccccCccCc
Q 008441 545 DDDDDVIDEYESEFESEEE 563 (565)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (565)
||++..||-+|+.+++||+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ 335 (335)
T 4fp9_B 317 EDDDEAEDNDEDEDDDEEE 335 (335)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccC
Confidence 4444455555666566653
No 196
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.16 E-value=15 Score=32.24 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=23.9
Q ss_pred cccccceecccccc--CCceeecCCCcccchhhHH
Q 008441 307 INETCVICLEDTDV--GHMFSIDGCLHRYCFLCMK 339 (565)
Q Consensus 307 ~~~~C~IC~e~~~~--~~~~~l~~C~H~fC~~Cl~ 339 (565)
....|.+|..++.. ..-.....|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35689999998732 2234456899999999854
No 197
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=35.12 E-value=16 Score=33.44 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=20.2
Q ss_pred cccCCCCceeEecCCcceEEe-ecCcc
Q 008441 478 RQCVKCNHLIELAEGCFHMTC-RCGHE 503 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC-~Cg~~ 503 (565)
-.|++|+.+..+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 57999999998866 99999 59864
No 198
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.67 E-value=22 Score=30.11 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=22.1
Q ss_pred cccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCce
Q 008441 394 KVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRF 437 (565)
Q Consensus 394 ~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~f 437 (565)
..+|| .|++++.+..- .......+.|..|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~---------~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPRED---------KVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCC---------TTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEccc---------CCCCeeEEECCCCCCeE
Confidence 56898 99999865421 11234578888888755
No 199
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=34.35 E-value=10 Score=29.41 Aligned_cols=25 Identities=28% Similarity=0.767 Sum_probs=17.1
Q ss_pred ccccCCCCceeEecCCcceEEee-cCc
Q 008441 477 WRQCVKCNHLIELAEGCFHMTCR-CGH 502 (565)
Q Consensus 477 ~k~CPkC~~~IEK~~GCnHMtC~-Cg~ 502 (565)
.-.|+.|+..++...+ .-+.|+ ||+
T Consensus 28 ~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEECCCCCCcceeCCC-CCccCCCCCc
Confidence 3579999999887644 445663 665
No 200
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=34.00 E-value=60 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhHHH
Q 008441 87 QSEELMKLDRELADSRQ 103 (565)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ 103 (565)
|-+||.|||+|+.+-|.
T Consensus 4 Q~EEILRLErEIE~Lqr 20 (51)
T 2lw9_A 4 QVEEILRLEKEIEDLQR 20 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999988665
No 201
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=33.76 E-value=16 Score=31.72 Aligned_cols=26 Identities=31% Similarity=0.873 Sum_probs=17.9
Q ss_pred cccCCCCceeEecCCcceEEee-cCccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHEF 504 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~F 504 (565)
-.||+|+.-..-..|= .+.|. |+++|
T Consensus 28 P~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred CCCCCCCCcceEecCC-eEECCcccccc
Confidence 6899999877766663 36663 66643
No 202
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=32.37 E-value=63 Score=28.10 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=35.0
Q ss_pred CCceEEEEEEeCCCCeEEEeeeeccc--cCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCCc
Q 008441 176 SLSAIGVAICDQMDNLIFELKKPLIK--SGLNKSAAETKALIEGLNAALSMELDRVRVFIDCF 236 (565)
Q Consensus 176 g~ag~Gv~i~~~~~~~~~~~~~~~~~--~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS~ 236 (565)
+...+|++|...+|.++ . ...+.. ...+ .-||-.||..+... -...++.+.++++..
T Consensus 22 s~~~VGAal~~~dG~i~-~-G~Nvena~~~~t-~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVY-R-GCNIENAAYSMC-NCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp TCCCEEEEEEETTSCEE-E-EECBCCSSGGGC-BCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CCCCEEEEEEeCCCeEE-E-EeCcccCCCCCc-cCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 56678999998877655 3 444421 1123 47898888876643 223456777776643
No 203
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=31.75 E-value=26 Score=30.48 Aligned_cols=43 Identities=14% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCCCCCCC---ccchhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccccCCCCCCccc
Q 008441 353 TCPHEGCKS---KLEVESCRIFLTLKLFEIWNQRMKEALIPVTEKVYCPYPKCSALMS 407 (565)
Q Consensus 353 kCP~~~C~~---~l~~~~i~~lL~~e~~e~y~~~~~e~~i~~~~~~~CP~p~C~~~i~ 407 (565)
.||. |+. .+....++.+|.++..+ +...++.+|++|+|.-++.
T Consensus 3 ~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf 48 (130)
T 2hu9_A 3 RCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYF 48 (130)
T ss_dssp BCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEE
T ss_pred cCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEE
Confidence 5886 876 45667788887765432 2335788999999997665
No 204
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.73 E-value=26 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=15.2
Q ss_pred cccCCCCc-eeEecCCcceEEee-cCc
Q 008441 478 RQCVKCNH-LIELAEGCFHMTCR-CGH 502 (565)
Q Consensus 478 k~CPkC~~-~IEK~~GCnHMtC~-Cg~ 502 (565)
..||.|+. .|..+..=..+.|. ||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 57999976 55555444456663 543
No 205
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=31.19 E-value=35 Score=34.72 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=22.9
Q ss_pred cccCCCCceeEecCCcceEEeecCcc-ccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHE-FCYNCGAEW 512 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~-FCw~C~~~~ 512 (565)
..||-|.-... +-++=.|||. ||+.|...|
T Consensus 296 ~~C~IC~~~~~-----~~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 296 RTCKVCMDKEV-----SVVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp CBCTTTSSSBC-----CEEEETTCCEEECTTTGGGC
T ss_pred CCCCccCCcCC-----ceEEcCCCChhHhHHHHhcC
Confidence 68999987653 2233369999 999999988
No 206
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=30.80 E-value=13 Score=30.61 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=27.6
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccCCCCCcCCCC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKNKKATCSCPL 523 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~~~~~c~C~~ 523 (565)
-.||-|..... +-++-.|||.||..|...|-..+. .||.
T Consensus 30 ~~CpI~~~~m~-----dPV~~~cGhtf~r~~I~~~l~~~~--~cP~ 68 (100)
T 2kre_A 30 FRDPLMDTLMT-----DPVRLPSGTIMDRSIILRHLLNSP--TDPF 68 (100)
T ss_dssp TBCTTTCSBCS-----SEEEETTTEEEEHHHHHHHTTSCS--BCSS
T ss_pred hCCcCccCccc-----CCeECCCCCEEchHHHHHHHHcCC--CCCC
Confidence 47998876554 334445999999999999876543 4553
No 207
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.19 E-value=35 Score=27.62 Aligned_cols=35 Identities=29% Similarity=0.639 Sum_probs=27.5
Q ss_pred ccccCCCCceeEecC-CcceEEee-cCcccccccccc
Q 008441 477 WRQCVKCNHLIELAE-GCFHMTCR-CGHEFCYNCGAE 511 (565)
Q Consensus 477 ~k~CPkC~~~IEK~~-GCnHMtC~-Cg~~FCw~C~~~ 511 (565)
.+.|--|+--|-.+. |=-++-|. |++-.|--|..-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY 52 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY 52 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHH
Confidence 378999999888864 77788884 888888888653
No 208
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=29.84 E-value=41 Score=26.18 Aligned_cols=31 Identities=29% Similarity=0.692 Sum_probs=21.4
Q ss_pred cccCCCCceeEecCCcceEEeecCcc-cccccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHE-FCYNCGAEWK 513 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~-FCw~C~~~~~ 513 (565)
..|+-|..... +.+.=.|||. ||+.|...|.
T Consensus 19 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~~ 50 (79)
T 2yho_A 19 MLCMVCCEEEI-----NSTFCPCGHTVCCESCAAQLQ 50 (79)
T ss_dssp TBCTTTSSSBC-----CEEEETTCBCCBCHHHHTTCS
T ss_pred CEeEEeCcccC-----cEEEECCCCHHHHHHHHHhcC
Confidence 57999976432 1222259998 9999988874
No 209
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.73 E-value=20 Score=33.83 Aligned_cols=29 Identities=34% Similarity=0.834 Sum_probs=0.0
Q ss_pred cccCCCCceeEecCCcceEEee-cCccccccc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCR-CGHEFCYNC 508 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~-Cg~~FCw~C 508 (565)
..|+.|+...- ----.-+|+ ||.-||..|
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECTTTCCEECSTT
T ss_pred CccCCCCCccC--CcccccccCCcCCEEChHH
No 210
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=29.61 E-value=50 Score=33.85 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=40.4
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESC 368 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i 368 (565)
.....|++=+.. ...+.....|.|.-|++= ..|+......+.+ +||. |+..+.++.+
T Consensus 247 ~vSL~CPlS~~r--i~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W-~CPI--C~k~~~~~dL 303 (371)
T 3i2d_A 247 IMSLQCPISYTR--MKYPSKSINCKHLQCFDA-LWFLHSQLQIPTW-QCPV--CQIDIALENL 303 (371)
T ss_dssp EEESBCTTTSSB--CSSEEEETTCCSSCCEEH-HHHHHHHHHSCCC-BCTT--TCCBCCGGGE
T ss_pred EEeecCCCcccc--ccccCcCCcCCCcceECH-HHHHHHhhcCCce-eCCC--CCcccCHHHe
Confidence 346789987755 356666778999988874 5566655444443 9998 9998887653
No 211
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=29.26 E-value=1.3e+02 Score=28.53 Aligned_cols=71 Identities=14% Similarity=0.274 Sum_probs=41.0
Q ss_pred ceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCCccchhhccCccCCcchhhHHHH
Q 008441 178 SAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFIDCFPLFQFVTGRWPAKQRKISVLV 257 (565)
Q Consensus 178 ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS~lv~~qv~G~w~~k~~~l~~l~ 257 (565)
.=+|++ .| ||--+.-.+.+ ..... ..+=..++.+-++++.++|++.|.+|.=| +..|+-....+..|+
T Consensus 8 ~HVAiI-MD--GNrRwAk~rgl-~r~~G-H~~G~~~~~~i~~~c~~lGI~~lTlYaFS-------tENw~Rp~~EV~~Lm 75 (225)
T 3ugs_B 8 KHLAVV-MD--GNRRWARAKGF-LAKLG-YSQGVKTMQKLMEVCMEENISNLSLFAFS-------TENWKRPKDEIDFIF 75 (225)
T ss_dssp CEEEEE-EC--CCC----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEE-------SGGGGSCHHHHHHHH
T ss_pred CeEEEe-cc--CcHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------ccccCCCHHHHHHHH
Confidence 334444 44 44444444555 22334 36778899999999999999999998744 355777666777665
Q ss_pred HHH
Q 008441 258 DQV 260 (565)
Q Consensus 258 ~~v 260 (565)
+-+
T Consensus 76 ~L~ 78 (225)
T 3ugs_B 76 ELL 78 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 212
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=29.07 E-value=24 Score=31.80 Aligned_cols=33 Identities=18% Similarity=0.597 Sum_probs=25.9
Q ss_pred cccccceeccccccCCceeec--CCCcccchhhHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSID--GCLHRYCFLCMKKHI 342 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~--~C~H~fC~~Cl~~~i 342 (565)
....|.||.+. .+++... .|...||..||...+
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhc
Confidence 46799999865 4556554 688999999999876
No 213
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=28.40 E-value=24 Score=30.27 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=23.0
Q ss_pred cccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCcee
Q 008441 394 KVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFC 438 (565)
Q Consensus 394 ~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC 438 (565)
..+|| .|++++.+.+- .......+.|..|++..=
T Consensus 4 ~~FCp--~CgnlL~~~~~---------~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCR--DCNNMLYPRED---------KENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCS--SSCCBCEEEEE---------TTTTEEEEECSSSSCEEE
T ss_pred CCccc--ccCccCccccc---------CcCCCCEEECCcCCCeee
Confidence 57898 99999875421 112346788999987553
No 214
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.22 E-value=39 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.692 Sum_probs=25.8
Q ss_pred cccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCC
Q 008441 394 KVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVP 444 (565)
Q Consensus 394 ~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~ 444 (565)
...|..++|.... ...+.|..|+..||..-+.+
T Consensus 25 ~~~C~~~~Ck~~~------------------~l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 25 SYSCSFKGCTDVE------------------LVAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp CEECCSTTCCCEE------------------SSCEECTTTCCEECGGGCST
T ss_pred CCCCCCcCCCCCC------------------ccceECCCCCcccccccCCc
Confidence 4579888898642 24579999999999998874
No 215
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.07 E-value=26 Score=26.53 Aligned_cols=33 Identities=27% Similarity=0.690 Sum_probs=25.0
Q ss_pred cccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCC
Q 008441 394 KVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVP 444 (565)
Q Consensus 394 ~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~ 444 (565)
...|..+.|.... ...+.|..|+..||..-+.+
T Consensus 12 ~~~Cs~~~Ck~~~------------------ll~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 12 TNKCERAGCRQRE------------------MMKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCCSTTCCCCC------------------SSCCBCSSSCCBCCHHHHST
T ss_pred CCCCCccCCCCCC------------------ccceECCCCCcccCcccCCc
Confidence 3578888888541 23579999999999988764
No 216
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.05 E-value=27 Score=36.04 Aligned_cols=33 Identities=24% Similarity=0.718 Sum_probs=27.0
Q ss_pred cccccceeccccccCCceeec--CCCcccchhhHHHHH
Q 008441 307 INETCVICLEDTDVGHMFSID--GCLHRYCFLCMKKHI 342 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~--~C~H~fC~~Cl~~~i 342 (565)
....|.+|.+. .+++... .|...||+.|++..+
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 46799999875 4566666 899999999999887
No 217
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.47 E-value=51 Score=25.95 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=26.5
Q ss_pred CCCcccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCC
Q 008441 391 VTEKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVP 444 (565)
Q Consensus 391 ~~~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~ 444 (565)
..+...|. .|+..+. ....+..|..||..||..|-..
T Consensus 16 d~~~~~C~--~C~~~Fs---------------~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCR--QCEKEFS---------------ISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCT--TTCCBCB---------------TTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCccc--CcCCccc---------------CccccccCCCCCCEEChHHhCC
Confidence 34456776 7776552 1345688999999999999763
No 218
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=26.44 E-value=42 Score=36.84 Aligned_cols=49 Identities=6% Similarity=0.175 Sum_probs=35.0
Q ss_pred chhhHHhhHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhcccHHHHHHHHHHHHhHHHHH
Q 008441 35 LDFAFRLQLQEAISASLAHVPSSSSTSSLPPSTSSAPPPLPHDAASPTLASLQSEELMKLDRELADSRQAK 105 (565)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (565)
.=||||.+|+|.+.- |.+ |..--....|.|..+||.+++.+++.+|.++
T Consensus 483 v~Layr~~L~~~L~L-------------p~~---------~~~m~f~~~~~vt~~dl~~a~~~v~~~e~~~ 531 (622)
T 3g06_A 483 VWLAYQNKLKKSLGL-------------TSV---------TSEMRFFDVSGVTVTDLQDAELQVKAAEKSE 531 (622)
T ss_dssp HHHHHHHHTTTTTTC-------------TTS---------CSCCSCGGGSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhhcCC-------------CCC---------CCCceeeecCCCCHHHHHHHHHHHHHhhhHH
Confidence 457888888776542 111 2223456667999999999999999998875
No 219
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.00 E-value=42 Score=28.82 Aligned_cols=35 Identities=26% Similarity=0.668 Sum_probs=25.4
Q ss_pred CcccccCCCCCCcccchhhhhccCCCcccccccCceeCCCCCCceecccCCC
Q 008441 393 EKVYCPYPKCSALMSKSEIERDASSSSFVGRRLGARKCTKCHRRFCIDCKVP 444 (565)
Q Consensus 393 ~~~~CP~p~C~~~i~~~~~~e~~~s~~~~~~~~~~~~C~~C~~~fC~~C~~~ 444 (565)
....|+ .|+..|. ....+..|..||..||..|...
T Consensus 68 ~~~~C~--~C~~~Fs---------------~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCM--ACGKGFS---------------VTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCT--TTCCBCC---------------SSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCc--CcCCccc---------------cccccccCCCCCeEEChHHhCC
Confidence 445676 7776542 1346689999999999999763
No 220
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=25.76 E-value=40 Score=32.80 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=48.1
Q ss_pred CCCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCCccchhhccCccCCcchhhH
Q 008441 175 VSLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFIDCFPLFQFVTGRWPAKQRKIS 254 (565)
Q Consensus 175 pg~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS~lv~~qv~G~w~~k~~~l~ 254 (565)
+-|.=+|+++ +||--+.-.+.+ ..... ..+=+.++..-++++.++|++.|.+|..| +..|+-....+.
T Consensus 23 ~iP~HVAiIM---DGN~RwAk~rgl-~r~~G-H~~G~~~~~~iv~~c~~lGI~~lTlYaFS-------tENwkRp~~EV~ 90 (256)
T 4h8e_A 23 NIPEHIAIIM---DGNGRWAKKRKM-PRIKG-HYEGMQTIKKITRIASDIGVKYLTLYAFS-------TENWSRPESEVN 90 (256)
T ss_dssp CCCSEEEEEC---CCHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHHHHTCSEEEEEEEE-------TTGGGSCHHHHH
T ss_pred CCCCEEEEEc---CCCHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------hhhhCCCHHHHH
Confidence 3455666553 445333333333 11224 47788899999999999999999999866 345777766766
Q ss_pred HHHHHH
Q 008441 255 VLVDQV 260 (565)
Q Consensus 255 ~l~~~v 260 (565)
.|++-+
T Consensus 91 ~Lm~L~ 96 (256)
T 4h8e_A 91 YIMNLP 96 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665533
No 221
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=25.57 E-value=79 Score=29.44 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=32.5
Q ss_pred EEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcC
Q 008441 180 IGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSME 225 (565)
Q Consensus 180 ~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~ 225 (565)
=+++|+|++|.+++....++ .+..|..|....|.+|+..-+.|
T Consensus 129 p~~flID~~G~I~~~~~~~~---~~g~~~~ell~~i~~lq~~~~~~ 171 (220)
T 1xcc_A 129 RCLFFISPEKKIKATVLYPA---TTGRNAHEILRVLKSLQLTYTTP 171 (220)
T ss_dssp EEEEEECTTSBEEEEEEECT---TBCCCHHHHHHHHHHHHHHHHSS
T ss_pred ceEEEECCCCEEEEEEecCC---CCCCCHHHHHHHHHHHHhhhcCC
Confidence 47889999998877766555 22346899999999998766655
No 222
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.64 E-value=56 Score=25.80 Aligned_cols=19 Identities=32% Similarity=0.861 Sum_probs=16.5
Q ss_pred cCceeCCCCCCceecccCC
Q 008441 425 LGARKCTKCHRRFCIDCKV 443 (565)
Q Consensus 425 ~~~~~C~~C~~~fC~~C~~ 443 (565)
..+..|..||..||..|-.
T Consensus 28 ~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 28 KKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCEECSSSCCEECTTTSC
T ss_pred hhhhhhcCCCcEEChhhcC
Confidence 4568899999999999975
No 223
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.55 E-value=60 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=16.9
Q ss_pred cCceeCCCCCCceecccCCC
Q 008441 425 LGARKCTKCHRRFCIDCKVP 444 (565)
Q Consensus 425 ~~~~~C~~C~~~fC~~C~~~ 444 (565)
..+..|..||..||..|...
T Consensus 35 ~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 35 VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp SCCEECTTTCCEECTGGGCC
T ss_pred hhcccccCCCcEEChHHhCC
Confidence 45789999999999999763
No 224
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.54 E-value=72 Score=32.59 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=40.2
Q ss_pred cccccceeccccccCCceeecCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCCccchhhH
Q 008441 307 INETCVICLEDTDVGHMFSIDGCLHRYCFLCMKKHIEEKLRQGMEPTCPHEGCKSKLEVESC 368 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~~~i~~~i~~g~~~kCP~~~C~~~l~~~~i 368 (565)
....|++=+..+ ..+.....|.|.-|++ +..|+...-..+.+ +||. |+..+.++.+
T Consensus 214 vSL~CPlS~~ri--~~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W-~CPi--C~k~~~~~dL 269 (360)
T 4fo9_A 214 VSLMCPLGKMRL--TIPCRAVTCTHLQCFD-AALYLQMNEKKPTW-ICPV--CDKKAAYESL 269 (360)
T ss_dssp EESBCTTTCSBC--SSEEEETTCCCCCCEE-HHHHHHHHHHSCCC-BCTT--TCSBCCGGGE
T ss_pred EeeeCCCcccee--ccCCcCCCCCCCccCC-HHHHHHHHhhCCCe-ECCC--CCcccCHHHe
Confidence 467899877553 5566667899998887 45567665555444 9998 9999887664
No 225
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=24.36 E-value=88 Score=30.00 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.1
Q ss_pred eEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCC
Q 008441 179 AIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMEL 226 (565)
Q Consensus 179 g~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~ 226 (565)
-=+++|+|++|.++.....++ .+.+|..|...+|.+|+..-+.|+
T Consensus 124 ~p~~fIID~dG~I~~~~~~~~---~~gr~~~Ellr~I~alq~~~~~~~ 168 (249)
T 3a2v_A 124 VRGVFIVDARGVIRTMLYYPM---ELGRLVDEILRIVKALKLGDSLKR 168 (249)
T ss_dssp CEEEEEECTTSBEEEEEEECT---TBCCCHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCeEEEEEecCC---cccchhHHHHHHHHHHHhccccCc
Confidence 346889999998877666555 234479999999999987665553
No 226
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.21 E-value=32 Score=28.38 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=13.8
Q ss_pred ccchhhHHHHHHHHHhC
Q 008441 332 RYCFLCMKKHIEEKLRQ 348 (565)
Q Consensus 332 ~fC~~Cl~~~i~~~i~~ 348 (565)
-||++||.+|+...-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999876543
No 227
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=24.21 E-value=86 Score=29.62 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred EEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcC
Q 008441 180 IGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSME 225 (565)
Q Consensus 180 ~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~ 225 (565)
=+++|+|++|.+++....++ .+.+|..|....|.+|+..-+.+
T Consensus 128 p~~fiID~~G~I~~~~~~~~---~~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 128 RAVFIIGPDKKLKLSILYPA---TTGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEEECTTSBEEEEEEECT---TBCCCHHHHHHHHHHHHHHHHSS
T ss_pred ceEEEECCCCEEEEEEecCC---CCCCCHHHHHHHHHHHHhhccCC
Confidence 37789999998877766555 22336899999999998765554
No 228
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=23.91 E-value=38 Score=26.28 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=13.5
Q ss_pred cccCCCCceeEecCCcceEEeecCc
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGH 502 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~ 502 (565)
-.|| |+...--.+|=..-+|.||.
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~CG~ 28 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCVCGR 28 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEETTTE
T ss_pred EECC-CCCEEEEcCCCcEEECCCCC
Confidence 3577 77765555554444444443
No 229
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.69 E-value=33 Score=28.23 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=13.6
Q ss_pred ccchhhHHHHHHHHHhC
Q 008441 332 RYCFLCMKKHIEEKLRQ 348 (565)
Q Consensus 332 ~fC~~Cl~~~i~~~i~~ 348 (565)
-||++||..|+...-..
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999876543
No 230
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=23.31 E-value=93 Score=27.43 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCceEEEEEEeCCCCeEEEeeeeccc--cCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCCc
Q 008441 176 SLSAIGVAICDQMDNLIFELKKPLIK--SGLNKSAAETKALIEGLNAALSMELDRVRVFIDCF 236 (565)
Q Consensus 176 g~ag~Gv~i~~~~~~~~~~~~~~~~~--~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS~ 236 (565)
+...+|++|...+|.++ . ...+.. ...+ +-||-.|+..+... =...++.+.|++|..
T Consensus 34 s~f~VGAal~~~dG~i~-~-G~NvEnas~~~t-~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 34 SRFPVGAALLTGDGRIF-S-GCNIENACYPLG-VCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp TCCCEEEEEEETTSCEE-E-EECBCCSSGGGC-BCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCCCEEEEEEeCCCcEE-E-EEeccccCCCCC-cCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 34567888888777654 3 333321 1223 57999998876643 223456777887643
No 231
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=22.87 E-value=52 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.419 Sum_probs=25.3
Q ss_pred cccccceeccccccC-CceeecCCCcccchhhHHHH
Q 008441 307 INETCVICLEDTDVG-HMFSIDGCLHRYCFLCMKKH 341 (565)
Q Consensus 307 ~~~~C~IC~e~~~~~-~~~~l~~C~H~fC~~Cl~~~ 341 (565)
....|.+|...|... .-+..-.||+.||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456899999877532 22445589999999998754
No 232
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=22.59 E-value=85 Score=29.32 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=32.0
Q ss_pred EEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcC
Q 008441 180 IGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSME 225 (565)
Q Consensus 180 ~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~ 225 (565)
=+++|+|++|.+++....++ .+..|..|....|.+|+..-+.+
T Consensus 132 p~~fiID~~G~I~~~~~~~~---~~gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 132 RVVFVFGPDKKLKLSILYPA---TTGRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp CEEEEECTTSBEEEEEECCT---TBCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCEEEEEEecCC---CCCCCHHHHHHHHHHHHhhccCC
Confidence 47889999998877766555 23346899999999998765554
No 233
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.50 E-value=40 Score=30.15 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=24.1
Q ss_pred cccccceecccccc--CCceeecCCCcccchhhH
Q 008441 307 INETCVICLEDTDV--GHMFSIDGCLHRYCFLCM 338 (565)
Q Consensus 307 ~~~~C~IC~e~~~~--~~~~~l~~C~H~fC~~Cl 338 (565)
....|.+|..++.. ..-.....|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 36799999997532 233455689999999997
No 234
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.24 E-value=35 Score=28.57 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=7.5
Q ss_pred CccchhhHHHhhhh
Q 008441 361 SKLEVESCRIFLTL 374 (565)
Q Consensus 361 ~~l~~~~i~~lL~~ 374 (565)
..++..+|...|+-
T Consensus 23 ~plta~ei~~~l~i 36 (105)
T 2gmg_A 23 GDYSPSELARILDM 36 (105)
T ss_dssp SCBCTTHHHHSSCC
T ss_pred CCCCHHHHHHHhCC
Confidence 44555566555543
No 235
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.09 E-value=53 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=25.4
Q ss_pred cccccccceeccccccC-CceeecCCCcccchhhHHH
Q 008441 305 KTINETCVICLEDTDVG-HMFSIDGCLHRYCFLCMKK 340 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~-~~~~l~~C~H~fC~~Cl~~ 340 (565)
......|.+|...|... .-...-.||+.||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 33456899999887532 2233458999999999764
No 236
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=21.90 E-value=64 Score=21.44 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.1
Q ss_pred ccCceeCCCCCCceecccCC-CcCCCCC
Q 008441 424 RLGARKCTKCHRRFCIDCKV-PWHNNMT 450 (565)
Q Consensus 424 ~~~~~~C~~C~~~fC~~C~~-~~H~g~t 450 (565)
....+.|..|+..+|..|.. .-|.+++
T Consensus 11 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 11 ERLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SSCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred CeeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 45678999999999999998 6787663
No 237
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=21.76 E-value=15 Score=36.36 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=22.2
Q ss_pred hcCCccccCCCCceeEecC-CcceEEe-ecCccc
Q 008441 473 SSNLWRQCVKCNHLIELAE-GCFHMTC-RCGHEF 504 (565)
Q Consensus 473 ~~~~~k~CPkC~~~IEK~~-GCnHMtC-~Cg~~F 504 (565)
-+..|.+||+|+.++-... .=|...| .|++++
T Consensus 26 ~~~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~ 59 (285)
T 2f9i_B 26 PAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHI 59 (285)
T ss_dssp CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCBC
T ss_pred ChHHHHhhHhhCCccchhhhHHhcCcCCCCCCCC
Confidence 3457999999999998763 4455566 466643
No 238
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=21.71 E-value=99 Score=27.06 Aligned_cols=57 Identities=19% Similarity=0.074 Sum_probs=35.4
Q ss_pred CCceEEEEEEeCCCCeEEEeeeeccc--cCCChHHHHHHHHHHHHHHHHhcC-CCeEEeecCCc
Q 008441 176 SLSAIGVAICDQMDNLIFELKKPLIK--SGLNKSAAETKALIEGLNAALSME-LDRVRVFIDCF 236 (565)
Q Consensus 176 g~ag~Gv~i~~~~~~~~~~~~~~~~~--~~tn~n~AEy~Ali~gL~~al~l~-~~~v~v~~DS~ 236 (565)
+...+|++|...+|.++ . ...+.. ...+ +-||-.|+..+... -... ++.+.|.+|..
T Consensus 30 S~f~VGAAl~~~dG~i~-~-G~NvEnasy~~t-~cAEr~Ai~~a~~~-G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 30 SHFRVGCSILTNNDVIF-T-GANVENASYSNC-ICAERSAMIQVLMA-GHRSGWKCMVICGDSE 89 (142)
T ss_dssp TCCCEEEEEECTTSCEE-E-EECBCCSSGGGC-BCHHHHHHHHHHHT-TCCSCCCEEEEEESCS
T ss_pred CCCCEEEEEEeCCCCEE-E-EEeecccCCCCC-cCHHHHHHHHHHHc-CCCCceEEEEEEeCCC
Confidence 45567888888777544 3 333321 1224 57999998877643 1223 77888888754
No 239
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=21.31 E-value=44 Score=32.04 Aligned_cols=22 Identities=27% Similarity=0.753 Sum_probs=14.1
Q ss_pred cccCCCCc----eeEecCCcceEEe-ecCc
Q 008441 478 RQCVKCNH----LIELAEGCFHMTC-RCGH 502 (565)
Q Consensus 478 k~CPkC~~----~IEK~~GCnHMtC-~Cg~ 502 (565)
-+||.|+- .+- ..| ++.| +||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 58999987 333 345 4666 4665
No 240
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=21.05 E-value=1.2e+02 Score=26.03 Aligned_cols=57 Identities=11% Similarity=-0.069 Sum_probs=34.5
Q ss_pred CCceEEEEEEeCCCCeEEEeeeeccccCCChHHHHHHHHHHHHHHHHhcCCCeEEeecCCc
Q 008441 176 SLSAIGVAICDQMDNLIFELKKPLIKSGLNKSAAETKALIEGLNAALSMELDRVRVFIDCF 236 (565)
Q Consensus 176 g~ag~Gv~i~~~~~~~~~~~~~~~~~~~tn~n~AEy~Ali~gL~~al~l~~~~v~v~~DS~ 236 (565)
+...+|++|...+|.++ . ...+.....+ +-||-.|+..+... =...++.+.+++|..
T Consensus 25 s~f~VGAal~~~dG~i~-~-G~NvE~~~~t-~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~~ 81 (130)
T 2z3g_A 25 EDYSVASAALSSDGRIF-T-GVNVYHFTGG-PCAELVVLGTAAAA-AAGNLTCIVAIGNEN 81 (130)
T ss_dssp SSSCEEEEEEETTSCEE-E-EECCCCTTTC-CCHHHHHHHHHHHT-TCCCEEEEEEEETTT
T ss_pred CCCCEEEEEEecCCeEE-E-EeccccCCcc-cCHHHHHHHHHHHc-CCCceEEEEEEECCC
Confidence 44568999988877654 3 4444222234 57999988876642 113456677777643
No 241
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.01 E-value=51 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=25.0
Q ss_pred cccccccceeccccccC-CceeecCCCcccchhhHHH
Q 008441 305 KTINETCVICLEDTDVG-HMFSIDGCLHRYCFLCMKK 340 (565)
Q Consensus 305 ~~~~~~C~IC~e~~~~~-~~~~l~~C~H~fC~~Cl~~ 340 (565)
......|.+|...|... .-.-.-.||+.||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 33456899999876532 2233458999999999764
No 242
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.98 E-value=57 Score=24.97 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=26.6
Q ss_pred ccccccceeccccccCCceeecCCCcccchhhHH
Q 008441 306 TINETCVICLEDTDVGHMFSIDGCLHRYCFLCMK 339 (565)
Q Consensus 306 ~~~~~C~IC~e~~~~~~~~~l~~C~H~fC~~Cl~ 339 (565)
.....|.||........++....|...|...|+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 3456799998776555677778899999999986
No 243
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.18 E-value=33 Score=25.60 Aligned_cols=36 Identities=31% Similarity=0.724 Sum_probs=27.7
Q ss_pred cccCCCCceeEecCCcceEEeecCccccccccccccC
Q 008441 478 RQCVKCNHLIELAEGCFHMTCRCGHEFCYNCGAEWKN 514 (565)
Q Consensus 478 k~CPkC~~~IEK~~GCnHMtC~Cg~~FCw~C~~~~~~ 514 (565)
..|+.|...- -.+||-|.---|+..||-.||..+.-
T Consensus 10 ~~C~iC~KTK-FADG~Gh~C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 10 PTCGICHKTK-FADGCGHNCSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCSSSSCSC-CCSSCCEEBTTTCCEECTTSEEEEES
T ss_pred chhhhhccce-eccCCCccccccCCeeecccCCEeee
Confidence 5788887543 35799886446999999999998763
Done!