Your job contains 1 sequence.
>008442
MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLW
LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL
LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG
LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY
KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLP
ESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENE
GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSS
IRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERA
PTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAIK
PKTEEGEDLKPKSNDEFRKMFIKKD
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008442
(565 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 1516 1.7e-155 1
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 400 1.1e-47 2
UNIPROTKB|F1N0I9 - symbol:SART3 "Uncharacterized protein"... 406 2.2e-47 2
UNIPROTKB|F1RGA7 - symbol:SART3 "Uncharacterized protein"... 412 2.2e-47 2
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 495 4.7e-47 1
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 408 9.7e-47 2
UNIPROTKB|E2QXZ2 - symbol:SART3 "Uncharacterized protein"... 413 9.9e-47 2
MGI|MGI:1858230 - symbol:Sart3 "squamous cell carcinoma a... 406 1.6e-46 2
UNIPROTKB|Q15020 - symbol:SART3 "Squamous cell carcinoma ... 399 5.7e-44 2
UNIPROTKB|F1NUL7 - symbol:SART3 "Uncharacterized protein"... 368 4.7e-39 2
UNIPROTKB|F8VV04 - symbol:SART3 "Squamous cell carcinoma ... 399 2.4e-35 1
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 309 3.5e-30 2
WB|WBGene00007111 - symbol:B0035.12 species:6239 "Caenorh... 247 3.0e-27 2
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ... 206 4.0e-24 3
DICTYBASE|DDB_G0291836 - symbol:DDB_G0291836 "Squamous ce... 162 2.8e-22 3
FB|FBgn0014024 - symbol:Rnp4F "RNA-binding protein 4F" sp... 208 4.4e-16 2
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 162 3.4e-15 3
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 135 1.1e-12 2
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 175 9.1e-11 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 182 9.7e-11 1
UNIPROTKB|Q5QP21 - symbol:RBM39 "RNA-binding protein 39" ... 159 1.0e-10 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 183 1.7e-10 1
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 183 1.7e-10 1
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 176 5.2e-10 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 151 7.6e-10 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 151 7.6e-10 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 148 1.6e-09 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 145 3.4e-09 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 161 3.6e-09 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 167 3.9e-09 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 161 5.3e-09 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 161 5.5e-09 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 161 5.5e-09 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 161 5.5e-09 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 161 5.5e-09 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 124 1.2e-08 2
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 158 1.2e-08 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 156 1.8e-08 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 155 2.4e-08 1
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 161 4.0e-08 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 158 4.5e-08 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 158 5.2e-08 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 152 5.3e-08 1
UNIPROTKB|Q5QP23 - symbol:RBM39 "RNA-binding protein 39" ... 147 6.4e-08 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 130 9.4e-08 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 153 9.5e-08 1
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 144 1.0e-07 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 130 1.4e-07 1
CGD|CAL0002502 - symbol:orf19.2563 species:5476 "Candida ... 128 1.6e-07 2
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 142 1.8e-07 1
UNIPROTKB|J9P448 - symbol:RBM23 "Uncharacterized protein"... 151 1.9e-07 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 150 2.3e-07 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 151 2.5e-07 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 127 2.9e-07 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 127 2.9e-07 1
POMBASE|SPAC16E8.06c - symbol:nop12 "RNA-binding protein ... 139 3.0e-07 2
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 148 3.8e-07 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 143 4.1e-07 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 143 5.0e-07 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 134 5.1e-07 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 148 5.2e-07 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 146 5.3e-07 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 146 5.3e-07 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 138 5.5e-07 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 146 5.9e-07 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 142 6.0e-07 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 132 6.8e-07 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 132 6.8e-07 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 142 6.9e-07 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 123 7.8e-07 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 146 8.6e-07 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 146 8.6e-07 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 146 8.6e-07 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 146 8.7e-07 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 146 8.7e-07 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 146 8.7e-07 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 146 8.7e-07 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 135 8.8e-07 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 122 1.0e-06 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 145 1.1e-06 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 145 1.1e-06 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 145 1.1e-06 1
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 144 1.2e-06 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 139 1.3e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 121 1.3e-06 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 135 1.4e-06 1
UNIPROTKB|D4A5G0 - symbol:Rbm39 "Protein Rbm39" species:1... 146 1.4e-06 2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 102 1.5e-06 2
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 142 1.6e-06 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 144 1.7e-06 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 119 2.1e-06 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 138 2.8e-06 2
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 117 3.5e-06 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 117 3.5e-06 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 132 3.6e-06 1
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 149 4.1e-06 2
DICTYBASE|DDB_G0289941 - symbol:DDB_G0289941 "Nucleolar p... 117 4.9e-06 2
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding... 134 5.0e-06 1
UNIPROTKB|H0Y4X3 - symbol:RBM39 "RNA-binding protein 39" ... 137 5.1e-06 2
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 140 5.2e-06 1
WARNING: Descriptions of 164 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 302/545 (55%), Positives = 384/545 (70%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLW 60
M + RAHLEE IS+QDLSD+EKFQ++M Y+K+E++SGDP RVQ +YERA+ ++PVSSDLW
Sbjct: 272 MYSERAHLEENISKQDLSDTEKFQEFMNYIKFEKTSGDPTRVQAIYERAVAEYPVSSDLW 331
Query: 61 LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSL 120
+DYT YLDKTLKVG + YSRAT++CPW G+LW I VFEKSL
Sbjct: 332 IDYTVYLDKTLKVGKAITHAYSRATRSCPWTGDLWARYLLALERGSASEKEIYDVFEKSL 391
Query: 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180
C FS+FEEYLDL+LTR+DGLRRR+L + +E LDYSLIRETFQ+ASDYL+ M+NTD
Sbjct: 392 QCTFSSFEEYLDLYLTRVDGLRRRMLSTRMLEA-LDYSLIRETFQQASDYLTPHMQNTDS 450
Query: 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240
LL L+ YWA+LE ++GKD+ ARGVW+ LK SG ML AW +YI ME+ L HI EARSIY
Sbjct: 451 LLHLHTYWANLELNIGKDLAGARGVWDSFLKKSGGMLAAWHAYIDMEVHLGHIKEARSIY 510
Query: 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLP 300
+RCY+++F GTGSEDIC WLRFERE+G LE FD +VQKV PRLEEL+L R QQES +
Sbjct: 511 RRCYTRKFDGTGSEDICKGWLRFEREHGDLEHFDLAVQKVMPRLEELQLMRLQQESTPVK 570
Query: 301 ESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENE 360
SA KEHS +KRK++ N+ E+S AKRQK QK +V D + A +N
Sbjct: 571 PSAGLKEHS-----SQKRKAEQNVE-EESLAKRQKRKSQK--EV-DLGGQSATVPATKNV 621
Query: 361 GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSS 420
E +T + K+ +DA P + K + DECTAF+SN+++KA ED+R+FF D GGV S
Sbjct: 622 KAENGKTADSD--KEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDS 679
Query: 421 IRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERA 480
IRILH K TGK RGLAY DF+DDEHLAAA+AKN++MF GKK+SIARSNPK+ K R
Sbjct: 680 IRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGKKEFTRRG 739
Query: 481 PTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAIK 540
+ + + + A ET + +G+ V+++GKNTFAVPRNV+PLG+ K
Sbjct: 740 NVDGSGNSKDPSLISEKAKAPLGGET--EGERKGNEVEVRGKNTFAVPRNVKPLGYTTPK 797
Query: 541 PKTEE 545
P +E
Sbjct: 798 PSADE 802
Score = 550 (198.7 bits), Expect = 9.2e-57, Sum P(2) = 9.2e-57
Identities = 124/265 (46%), Positives = 167/265 (63%)
Query: 301 ESADQKEHS-VKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
ES K + +K+ +KRK++ N+ E+S AKRQK QK +V D + A +N
Sbjct: 565 ESTPVKPSAGLKEHSSQKRKAEQNVE-EESLAKRQKRKSQK--EV-DLGGQSATVPATKN 620
Query: 360 EGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVS 419
E +T + K+ +DA P + K + DECTAF+SN+++KA ED+R+FF D GGV
Sbjct: 621 VKAENGKTADSD--KEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVD 678
Query: 420 SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGER 479
SIRILH K TGK RGLAY DF+DDEHLAAA+AKN++MF GKK+SIARSNPK+ K R
Sbjct: 679 SIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGKKEFTRR 738
Query: 480 APTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAI 539
+ + + + A ET + +G+ V+++GKNTFAVPRNV+PLG+
Sbjct: 739 GNVDGSGNSKDPSLISEKAKAPLGGET--EGERKGNEVEVRGKNTFAVPRNVKPLGYTTP 796
Query: 540 KPKTEEGEDLKPKSNDEFRKMFIKK 564
KP +E PKSNDEFR MF+KK
Sbjct: 797 KPSADE----TPKSNDEFRNMFLKK 817
Score = 58 (25.5 bits), Expect = 9.2e-57, Sum P(2) = 9.2e-57
Identities = 49/241 (20%), Positives = 94/241 (39%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LE ++S ++ + Y+ Y+K + + + +++ E FP+S LWL++ +
Sbjct: 55 LESELS----ANPYNYDAYVQYIKLLRKTANLEKLRQAREAMSAIFPLSPSLWLEWARD- 109
Query: 68 DKTLKVGNVVRDV---YSRATKN-------CPWVGELWVXXXXXXXXXXXXXXXISTVFE 117
+ +L V ++ Y R + C ++ + + ++FE
Sbjct: 110 EASLAASENVPEIVMLYERGLSDYQSVSLWCDYLSFMLEFDPSVRGYPSEGISKMRSLFE 169
Query: 118 KSLLCA-FSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQ 174
+++ A F E + + G+ I + E IR F R +LS
Sbjct: 170 RAIPAAGFHVTEGNRIWEGYREFEQGVLATIDEADIEERNKQIQRIRSIFHR---HLSVP 226
Query: 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234
++N L Y W LEQ + D+ S + L K+S + A + M E H+
Sbjct: 227 LENLSSTLIAYKTW-ELEQGIDLDIGS-----DDLSKVSHQVAVANKKAQQMYSERAHLE 280
Query: 235 E 235
E
Sbjct: 281 E 281
Score = 55 (24.4 bits), Expect = 1.9e-56, Sum P(2) = 1.9e-56
Identities = 37/175 (21%), Positives = 75/175 (42%)
Query: 42 VQLLYERAITDFPVSSDLWLDYTQYL---DKTLK----VG-NVVRDVYSRATKNCPW-VG 92
+ +LYER ++D+ S LW DY ++ D +++ G + +R ++ RA + V
Sbjct: 122 IVMLYERGLSDYQ-SVSLWCDYLSFMLEFDPSVRGYPSEGISKMRSLFERAIPAAGFHVT 180
Query: 93 E---LWVXXXXXXXXXXXXXXXISTVFE--KSLLCAFSTFEEYLDLFLTRIDGLRRRILF 147
E +W + + E K + S F +L + L + I +
Sbjct: 181 EGNRIWEGYREFEQGVLATIDE-ADIEERNKQIQRIRSIFHRHLSVPLENLSSTL--IAY 237
Query: 148 -SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS 201
+ E+E +D + + + S ++ K ++Y+ AHLE+++ K +S
Sbjct: 238 KTWELEQGIDLDIGSDDLSKVSHQVAVANKKAQ---QMYSERAHLEENISKQDLS 289
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 400 (145.9 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 107/355 (30%), Positives = 168/355 (47%)
Query: 17 LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76
+S+ K +Y Y+ +E GDP RVQ+++ RA+ + + DLW+ YT YLD+ LK+ ++
Sbjct: 285 VSEPPKLAEYQSYIDFEIKEGDPARVQIIFGRALAENCLVPDLWIKYTTYLDRQLKIKDL 344
Query: 77 VRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLT 136
V + RA +NCPW LW + VFEK+L F +Y++++ +
Sbjct: 345 VLSAHERAVRNCPWTMGLWKSYLLALERHGADHQTVKDVFEKALNAGFIQATDYVEIWQS 404
Query: 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDGLLR--LYAYWAHL 191
+D LRRR+ FS E LD +R F R+ +YL + ++ + G L L WA +
Sbjct: 405 YLDYLRRRVDFSKEWSRELDE--LRAAFSRSLEYLKQDVEERFSESGDLSCTLMQIWARI 462
Query: 192 EQSMGKDMVSARGVWERLL-KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250
E K+M AR +W+ ++ K + W Y ++E R R + T
Sbjct: 463 EALHCKNMQKARELWDSIMTKGNAKYANMWLEYYNLERSYGDAAHCRKALHRAV--QCTS 520
Query: 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSV 310
E +C L FER G+LED+D +VQK +L + R++ K E+ ++
Sbjct: 521 DYPEHVCDVLLNFERVEGSLEDWDAAVQKTETKLNRVCEQRARVAEK---EALHARQEEE 577
Query: 311 KKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETK 365
K R K K+D K QK QK + DK K + + EE G E +
Sbjct: 578 KAEQRRKVKADK---------KAQKKG-QKANRTGDKRKAEDDD--EEEWGEEAE 620
Score = 152 (58.6 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 54/175 (30%), Positives = 85/175 (48%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
F+S + AT E L + G + +IRI+ ++ +GKS+GLAYV+F D+ + AV K +
Sbjct: 789 FISGLPYSATKETLEDLCKEHGTIRAIRIVTNR-SGKSKGLAYVEFEDEAQASQAVLKMD 847
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGERAPTE---QAQSHQQTGNAGTSASKESSIETSKQS 510
M LS+A SNP R+ E AP+ A Q G G ++ S + S
Sbjct: 848 GTMLENFTLSVAISNPPGRR-MKDEAAPSRFLGAAMPRQLQGARGKGRTQISLLPRSLYR 906
Query: 511 RGRGDSVQLKGKN-TFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFIKK 564
+ D+ K +N T + P G ++ +T K SN++F +M +KK
Sbjct: 907 QSTPDA---KAENGTISAPHATVTDGETSLDTQT------KSLSNEDFARMLLKK 952
Score = 87 (35.7 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 55/239 (23%), Positives = 97/239 (40%)
Query: 291 RSQQESK-SLPESADQKEHSVKKTGREKRKSDSNISYE-----QSPAKRQKHAPQKPKKV 344
+++Q K + A +K +TG +KRK++ + E + P+KR + V
Sbjct: 578 KAEQRRKVKADKKAQKKGQKANRTG-DKRKAEDDDEEEWGEEAELPSKRLRGEDDFDSTV 636
Query: 345 HDKEKRQVQNL-------AEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAF 395
++ L A + E G Q +P++QP D + K DE F
Sbjct: 637 TEELMETESGLFGRRAPPARKTEPPGFRKNQQGAPEPQRQP-HDMPKEQRK---DENCVF 692
Query: 396 LSNI--NLKATYEDLRRFFSDVGGVSSIRILHDKFTGKS--RGLAYVDFIDDEHLAAAVA 451
+SN+ N++ LR F G + +R + FT K RG YV F D + A+
Sbjct: 693 VSNLTFNMEDPEGKLRTLFQGCGTIQQVRPV---FTAKGTFRGYCYVQFEDRLAVPEALK 749
Query: 452 KNKQMFLGKKLSIARSNPKQRK-DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQ 509
++Q G+ + ++ K + D + T + SA+KE+ + K+
Sbjct: 750 MDRQEVDGRPMYVSPCVDKNKNPDFKVFKYKTSMEKHKIFISGLPYSATKETLEDLCKE 808
Score = 84 (34.6 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 53/204 (25%), Positives = 80/204 (39%)
Query: 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNV--VRDVYSRATK 86
++ + D RV L+ERAI D+ V ++WL+Y QY + G + VR ++ RA
Sbjct: 120 IRITEDESDRERVYELFERAIKDY-VCPEIWLEYVQYSIGGMGAQGGIERVRSIFERALT 178
Query: 87 NCPWVG-ELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRI 145
VG + +STV +E L L RI L RR
Sbjct: 179 A---VGLHMTKGASIWEAYREFEIVILSTVQPPPGTVPSQEQQELLSAQLERIHTLFRRQ 235
Query: 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGV 205
L ++D + T+ SD+ + + T + Y L+Q M +
Sbjct: 236 L----AVPLMD---MEGTYAEYSDWADDGVPETV----THQYRRALQQ-----MEKGKPY 279
Query: 206 WERLLKISGAMLEAWQSYISMEIE 229
E LL L +QSYI EI+
Sbjct: 280 EEALLVSEPPKLAEYQSYIDFEIK 303
Score = 60 (26.2 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 23/118 (19%), Positives = 54/118 (45%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ-- 65
LEEQ+S ++ + ++ +K + G R++ ++ FP++ ++WLD+ +
Sbjct: 64 LEEQLS----INAFDYNCHVDLIKLLRQEGKLHRLRKARQKMSELFPLTEEIWLDWLKDE 119
Query: 66 -YLDKTLKVGNVVRDVYSRATKN--CPWVGELWVXXXXXXXXXXXXXXXISTVFEKSL 120
+ + V +++ RA K+ CP + +V + ++FE++L
Sbjct: 120 IRITEDESDRERVYELFERAIKDYVCPEIWLEYVQYSIGGMGAQGGIERVRSIFERAL 177
Score = 51 (23.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 278 QKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHA 337
++V LE+ + E+K L +Q+ +K R+ + ++ K K A
Sbjct: 534 ERVEGSLEDWDAAVQKTETK-LNRVCEQRARVAEKEALHARQEEEKAE-QRRKVKADKKA 591
Query: 338 PQKPKKVHDK-EKRQVQNLAEENEGRETKQTVEEQPKKQ 375
+K +K + +KR+ ++ EE G E E P K+
Sbjct: 592 QKKGQKANRTGDKRKAEDDDEEEWGEEA-----ELPSKR 625
Score = 39 (18.8 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 313 TGREKRKSDSNISYEQSPAKRQKHAPQKPKKV-----HDKEKRQVQNLAEENEGRETKQT 367
TG E++ +I E +R+ + ++ H +E+ + +E E Q
Sbjct: 4 TGNEEQTLLPDIEEEAEGMEREMESEDDEEEEGMGVEHSEEEDEEDTSEDERENEAEIQR 63
Query: 368 VEEQ 371
+EEQ
Sbjct: 64 LEEQ 67
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 406 (148.0 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 106/399 (26%), Positives = 185/399 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 3 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 62
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
+SRA +NCPW LW IS FEK+L F +Y++++
Sbjct: 63 LSAHSRAVRNCPWTVALWSRYLLALERHGVEHRVISVTFEKALSAGFIQATDYVEIWQAY 122
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ D + WA +E
Sbjct: 123 LDYLRRRVDFKQDSSKELEE--LRSAFARALEYLKQEVEERFSESGDPSCLIMQNWARIE 180
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 181 ARLCNNMQKARELWDSIMTRGNAKFANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 238
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + ++Q K+ + A + +
Sbjct: 239 YPEHVCEVLLTMERTEGTLEDWDIAVQKTETRLARV----NEQRIKAAEKEAALAQQEEE 294
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEE-NEGRETKQTVEE 370
K + KR + ++ K++ K + D EK + E+ ++ R + +V
Sbjct: 295 KVEQRKRARAEKKALKK---KKKTRGADKHRADEDDEKEWGDDEEEQPSKRRRVENSVPP 351
Query: 371 QPKKQPIKDA-VPGRTKGFTDECTAFLSNINLKATYEDL 408
+ +P +A + G + E + L + + A D+
Sbjct: 352 AGEAEPGSEADLSGSSAPAATESPSELKEVRVGARRRDV 390
Score = 116 (45.9 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 38/138 (27%), Positives = 63/138 (45%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V IR++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 502 FVSGLPFSCTKEELEEICKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQASQAVLKMD 560
Query: 455 QMFLGKK-LSIARSNPKQRK---DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
M + + + +A SNP QRK +AP Q G G ++ S + + Q
Sbjct: 561 GMTIRENVIKVAISNPPQRKVPEKPEARKAPGSALLPRQVYGARGKGRTQLSLLPRALQ- 619
Query: 511 RGRGDSVQLKGKNTFAVP 528
R + + +N A P
Sbjct: 620 --RPSAATAQAENGPATP 635
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 412 (150.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 106/355 (29%), Positives = 176/355 (49%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 306 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 365
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW IS FEK+L F +Y++++
Sbjct: 366 LSVHSRAVRNCPWTVALWSRYLLAMERHGVDHRGISVTFEKALSAGFIQATDYVEIWQAY 425
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 426 LDYLRRRVDFKQDSSKELEE--LRSAFARALEYLKQEVEERFNESGDPSCLIMQNWARIE 483
Query: 193 QSMGKDMVSARGVWERLL-KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ K + W Y ++E R R + T
Sbjct: 484 ARLCNNMQKARELWDSIMTKGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 541
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + ++Q K A +KE ++
Sbjct: 542 YPEHVCEVLLTMERTEGTLEDWDIAVQKTETRLARV----NEQRIK-----AAEKEAALA 592
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQ 366
+ +E+ K++ ++ A+ +K A +K KK EK V E+ G E ++
Sbjct: 593 Q--QEEEKAE-----QRKRARAEKKALKKKKKTRGAEKNMVDEDDEKEWGDEEEE 640
Score = 121 (47.7 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 51/175 (29%), Positives = 79/175 (45%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V IR++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 800 FISGLPFSCTREELEEICKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQASQAVLKMD 858
Query: 455 QMFLGKKL-SIARSNPKQRK---DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
M + + + +A SNP QRK +AP Q G G ++ S + + Q
Sbjct: 859 GMTVKENIIKVAISNPPQRKFPEKPEARKAPGGPLVPRQIYGARGKGRTQLSLLPRALQR 918
Query: 511 RGRGDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPK-SNDEFRKMFIKK 564
G + Q +N A P P G A TE PK SN +F K+ ++K
Sbjct: 919 PG-APAAQ--AENGPAPP----PAG--ATPAATEA-----PKMSNADFAKLLLRK 959
Score = 76 (31.8 bits), Expect = 5.0e-09, Sum P(4) = 5.0e-09
Identities = 24/108 (22%), Positives = 56/108 (51%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQK 335
++++ LE+ + + E++ L +Q+ + +K ++ + ++ A+ +K
Sbjct: 552 TMERTEGTLEDWDIAVQKTETR-LARVNEQRIKAAEKEAALAQQEEEKAE-QRKRARAEK 609
Query: 336 HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP-KKQPIKDAVP 382
A +K KK EK N+ +E++ +E EEQP K++ ++++VP
Sbjct: 610 KALKKKKKTRGAEK----NMVDEDDEKEWGDEEEEQPSKRRRLENSVP 653
Score = 63 (27.2 bits), Expect = 5.0e-09, Sum P(4) = 5.0e-09
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNV--VRDVYSRA 84
D V L+E+A+ D+ + ++WL+Y QY + + G + VR V+ RA
Sbjct: 166 DREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERA 214
Score = 58 (25.5 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 129 EYL-DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187
E+L D +DGL R ++ + V DY + + Y + GL ++ +
Sbjct: 152 EWLHDEISMALDGLDREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSV 210
Query: 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219
+ S+G M +WE + A++EA
Sbjct: 211 FERALSSVGLHMTKGLAIWEAYREFESAIVEA 242
Score = 55 (24.4 bits), Expect = 3.1e-08, Sum P(4) = 3.1e-08
Identities = 22/92 (23%), Positives = 49/92 (53%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LEEQ+S ++ D + L+ E G+ +V++ ++ FP++ +LWL++ +
Sbjct: 102 LEEQLSI-NVYDYNCHVDLIRLLRLE---GELTKVRMARQKMSEIFPLTEELWLEWL-HD 156
Query: 68 DKTLKVGNVVR----DVYSRATKN--CP--WV 91
+ ++ + + R D++ +A K+ CP W+
Sbjct: 157 EISMALDGLDREHVYDLFEKAVKDYICPNIWL 188
Score = 44 (20.5 bits), Expect = 5.0e-09, Sum P(4) = 5.0e-09
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 207 ERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
E LL+ L +Q+YI E+++ + I++R
Sbjct: 301 EALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFER 336
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 495 (179.3 bits), Expect = 4.7e-47, P = 4.7e-47
Identities = 130/457 (28%), Positives = 223/457 (48%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ K +Y Y+ +E +GDP R+QL+YERA+ + + DLW Y QYLD+ LKV +V
Sbjct: 269 AETPKLAEYQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLDRQLKVKELV 328
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
+ RA +NCPW LW+ IS +FEK+L F +Y++++
Sbjct: 329 LSAHDRAVRNCPWTVGLWIQYLLAMERHGVDHCIISDMFEKALNAGFIQATDYVEIWQAY 388
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG- 196
+D LRRR+ F+ + L+ +R F RA +YL ++++ L +H + +G
Sbjct: 389 LDYLRRRVDFTQDSSKELEE--LRSAFARAVEYLKQEVEELQTCRYLGQQASHGDLEIGG 446
Query: 197 -KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS-- 253
++V A + LL L +Q+YI E++ + IY++ + T
Sbjct: 447 AAEVVGACSFY--LLGAETPKLAEYQAYIDFEMKAGDPARIQLIYEKALHRAVQCTSDYP 504
Query: 254 EDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK--SLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + R++ K L E +K+ + K
Sbjct: 505 EHVCEVLLTLERIEGTLEDWDAAVQKTENRLARVNEQRAKLRRKPSKLSEGGGKKKQTEK 564
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
EK + + E++ ++Q A +K K K + + A++++ E Q EE
Sbjct: 565 NRAAEKEAALARQEEEKAEQRKQSRAEKKASKKAKKNRIGEKRKADDDDEGEWGQEEEED 624
Query: 372 PKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYED--LRRFFSDVGGVSSIR-ILHDKF 428
P +Q D+ D T F+SN++ T + L+ F G VS +R + +K
Sbjct: 625 PLRQREHDS--------KDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK- 675
Query: 429 TGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
G RG YV+F D++ A+ ++++ G+ + ++
Sbjct: 676 -GTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVS 711
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 408 (148.7 bits), Expect = 9.7e-47, Sum P(2) = 9.7e-47
Identities = 107/382 (28%), Positives = 179/382 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 304 AEAPRLAEYQAYIDFEMKVGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 363
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW IS FE +L F +Y++++
Sbjct: 364 LSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQMISATFENALSAGFIQATDYVEIWQVY 423
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ D + WA +E
Sbjct: 424 LDYLRRRVDFRQDSSKELEE--LRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVE 481
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 482 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 539
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D ++QK RL + ++Q K A +KE ++
Sbjct: 540 YPEHVCEVLLTMERTEGTLEDWDLAIQKTETRLARV----NEQRMK-----AAEKEAALV 590
Query: 312 KTGREKRKSDSNISYEQSPAKRQK-HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEE 370
+ EK + + E+ K++K K K D ++R+ EE E + +K+ E
Sbjct: 591 QQEEEKAEQRKKVRAEKKALKKKKTRGADKRKAGEDDDEREC---GEEEEEQPSKRRRME 647
Query: 371 QPKKQPIKDAVPGRTKGFTDEC 392
+ A TK + +C
Sbjct: 648 NSLASGVASAKEEETK-LSGKC 668
Score = 119 (46.9 bits), Expect = 9.7e-47, Sum P(2) = 9.7e-47
Identities = 46/172 (26%), Positives = 77/172 (44%)
Query: 346 DKEKRQVQNLAEEN-EGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+K +Q +L +N EGR + K P D R ++ F+S + T
Sbjct: 754 EKSAQQALDLDRKNVEGRPMFVSPCVDKSKNP--DFKMFRYSTTLEKHKLFISGLPFSCT 811
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKK-LS 463
E+L G V +R++ ++ GK +GLAYV++ ++ + AV K M + + +
Sbjct: 812 KEELEGICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVLKMDGMTIKENVIK 870
Query: 464 IARSNPKQRK--DSSGER-APTEQAQSHQQTGNAGTSASKESSIETSKQSRG 512
+A SNP QRK + R AP Q G G ++ S + + Q +G
Sbjct: 871 VAISNPPQRKVPEKPEVRTAPGAPMVPRQMYGARGKGRTQLSLLPRALQRQG 922
Score = 102 (41.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 47/201 (23%), Positives = 88/201 (43%)
Query: 278 QKVTPRLEELRLFRSQQESKSLPES--ADQKEHSVKKT-GREKRKSDSNISYEQSPAKRQ 334
Q++ +E L + ++E + A++K KKT G +KRK+ + E+ + +
Sbjct: 578 QRMKAAEKEAALVQQEEEKAEQRKKVRAEKKALKKKKTRGADKRKAGEDDD-ERECGEEE 636
Query: 335 KHAPQKPKKVHDKEKRQVQNLAEENEGRETK-QTVE-EQPKKQPIKDAVPGRTK------ 386
+ P K +++ + V + EE K T++ P KQ K A R
Sbjct: 637 EEQPSKRRRMENSLASGVASAKEEETKLSGKCLTIDVAPPSKQKEKAASLKRDMPKVAHD 696
Query: 387 GFTDECTAFLSNI--NLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
D T F+SN+ +++ LR F G V IR + G RG YV+F +++
Sbjct: 697 SSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEK 755
Query: 445 HLAAAVAKNKQMFLGKKLSIA 465
A+ +++ G+ + ++
Sbjct: 756 SAQQALDLDRKNVEGRPMFVS 776
Score = 70 (29.7 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 47/251 (18%), Positives = 112/251 (44%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LEEQ+S + + ++ ++ + G+ +V++ ++ FP++ +LWL++ +
Sbjct: 100 LEEQLS----INGYDYNCHVGLIRLLRLEGELNKVRMARQKMSEIFPLTEELWLEWL-HD 154
Query: 68 DKTLKVGNVVRD----VYSRATKN--CPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLL 121
+ ++ V + R+ ++ RA K+ CP + + + +VFE++L
Sbjct: 155 EISMAVDGLDRERVYELFERAVKDYICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALS 214
Query: 122 CA-------FSTFEEYLDLFLTRIDGLR-RRI--LFSGEVEGVLDYSLIRETFQRASDYL 171
+ +E Y + ++ R R+ LF ++ L Y + TF ++
Sbjct: 215 SVGLHMTKGLAIWEAYREFESAIVEAARLERVHSLFRRQLAIPL-YEM-EATFAEYEEWS 272
Query: 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231
E + + +L+ Y ++++G+ + + E LL+ L +Q+YI E+++
Sbjct: 273 EEPIP--ESVLQSY------QKALGQ-LEKYKPYEEALLQAEAPRLAEYQAYIDFEMKVG 323
Query: 232 HINEARSIYKR 242
+ I++R
Sbjct: 324 DPARIQLIFER 334
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 413 (150.4 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
Identities = 105/362 (29%), Positives = 181/362 (50%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP RVQL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 424 AEAPRLAEYQAYIDFEMKIGDPARVQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 483
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW IS FEK+L F +Y++++
Sbjct: 484 LSVHNRAVRNCPWTVALWTRYLLAMERHGVDHRVISVTFEKALSAGFIQATDYVEIWQAY 543
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 544 LDYLRRRVDFKQDSSKELEE--LRSAFTRALEYLKQEVEERFNESGDPSCMIMQNWARIE 601
Query: 193 QSMGKDMVSARGVWERLL-KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ K + W Y ++E R R + T
Sbjct: 602 ARLCNNMQKARELWDSIMTKGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 659
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVK 311
E +C L ER GTLED+D +VQK RL + ++Q K A +KE ++
Sbjct: 660 YPEHVCEVLLTMERTEGTLEDWDIAVQKTETRLARV----NEQRIK-----AAEKEAALA 710
Query: 312 KTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ 371
+ +E+ K++ ++ A+ +K A +K KK +KR+ + E+ G + ++ ++
Sbjct: 711 Q--QEEEKAE-----QRKRARAEKKALKKKKKTRGADKRKAEEDDEKEWGDDEEEQPSKR 763
Query: 372 PK 373
K
Sbjct: 764 RK 765
Score = 116 (45.9 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
Identities = 44/171 (25%), Positives = 74/171 (43%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V IR++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 923 FVSGLPFSCTKEELEEICKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQASQAVLKMD 981
Query: 455 QMFLGKK-LSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
M + + + +A SNP QRK E+ T++A A + + R
Sbjct: 982 GMTIKENVIKVAISNPPQRKVP--EKPETKKAPGGGMVPRQIYGARGKGRTQLCLLPRA- 1038
Query: 514 GDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFIKK 564
L+ +T A P PA+ T + SN +F K+ ++K
Sbjct: 1039 -----LQRPSTTAAQAENGPAPQPAVT--TSAATEAPKMSNADFAKLLLRK 1082
Score = 76 (31.8 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 24/108 (22%), Positives = 56/108 (51%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQK 335
++++ LE+ + + E++ L +Q+ + +K ++ + ++ A+ +K
Sbjct: 670 TMERTEGTLEDWDIAVQKTETR-LARVNEQRIKAAEKEAALAQQEEEKAE-QRKRARAEK 727
Query: 336 HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP-KKQPIKDAVP 382
A +K KK +KR+ AEE++ +E EEQP K++ ++++ P
Sbjct: 728 KALKKKKKTRGADKRK----AEEDDEKEWGDDEEEQPSKRRKVENSTP 771
Score = 64 (27.6 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNV--VRDVYSRA 84
D V L+E+A+ D+ + ++WL+Y QY + + G + VR V+ RA
Sbjct: 284 DREHVYELFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERA 332
Score = 58 (25.5 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 129 EYL-DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187
E+L D +DGL R ++ + V DY + + Y + GL ++ +
Sbjct: 270 EWLHDEISMALDGLDREHVYELFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSV 328
Query: 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219
+ S+G M +WE + A++EA
Sbjct: 329 FERALSSVGLHMTKGLAIWEAYREFESAIVEA 360
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 406 (148.0 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 104/382 (27%), Positives = 176/382 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 306 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 365
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW IS FE +L F +Y++++
Sbjct: 366 LSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQTISATFENALSAGFIQATDYVEIWQVY 425
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ D + WA +E
Sbjct: 426 LDYLRRRVDFRQDSSKELEE--LRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVE 483
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 484 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 541
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER GTLED+D ++QK RL E R+ +++E+ +L + ++K
Sbjct: 542 YPEHVCEVLLTMERTEGTLEDWDLAIQKTETRLARVNEQRMKAAEKEA-ALVQQEEEKAE 600
Query: 309 SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKE----KRQVQNLAEENEGRET 364
KK EK+ + +R+ + ++E +R+ +N E
Sbjct: 601 QRKKVRAEKKALKKKKKTRGADKRREDEDEENEWGEEEEEQPSKRRRTENSLASGEASAM 660
Query: 365 KQTVEEQPKKQPIKDAVPGRTK 386
K+ E K I P + K
Sbjct: 661 KEETELSGKCLTIDVGPPSKQK 682
Score = 119 (46.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 45/174 (25%), Positives = 76/174 (43%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 804 FISGLPFSCTKEELEDICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 862
Query: 455 QMFLGKK-LSIARSNPKQRK--DSSGER-APTEQAQSHQQTGNAGTSASKESSIETSKQS 510
M + + + +A SNP QRK + R AP Q G G ++ S + + Q
Sbjct: 863 GMTIRENVIKVAISNPPQRKVPEKPEVRTAPGAPMLPRQMYGARGKGRTQLSLLPRALQR 922
Query: 511 RGRGDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFIKK 564
+G + G P PA+ P + SN +F K+ ++K
Sbjct: 923 QGAAPQAE-NG-----------PAPGPAVAPSV--ATEAPKMSNADFAKLLLRK 962
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 50/251 (19%), Positives = 110/251 (43%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LEEQ+S D + + L+ E G+ RV+ ++ FP++ +LWL++ +
Sbjct: 102 LEEQLSINGY-DYNCHVELIRLLRLE---GELSRVRAARQKMSELFPLTEELWLEWL-HD 156
Query: 68 DKTLKVGNVVRD----VYSRATKN--CPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLL 121
+ ++ + + R+ ++ RA K+ CP + + + +VFE++L
Sbjct: 157 EISMAMDGLDREHVYELFERAVKDYICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALS 216
Query: 122 CA-------FSTFEEYLDLFLTRIDGLR-RRI--LFSGEVEGVLDYSLIRETFQRASDYL 171
+ +E Y + ++ R ++ LF ++ L Y + TF ++
Sbjct: 217 SVGLHMTKGLAIWEAYREFESAIVEAARLEKVHSLFRRQLAIPL-YEM-EATFAEYEEWS 274
Query: 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231
E M + +L+ Y ++++G+ + + E LL+ L +Q+YI E+++
Sbjct: 275 EEPMP--ESVLQSY------QKALGQ-LEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIG 325
Query: 232 HINEARSIYKR 242
+ I++R
Sbjct: 326 DPARIQLIFER 336
>UNIPROTKB|Q15020 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 EMBL:AB020880 GO:GO:0043231
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 EMBL:AF387506 EMBL:D63879 EMBL:AK290209
EMBL:BC032601 EMBL:BC041638 EMBL:BC093784 EMBL:BC103706
EMBL:BC111983 IPI:IPI00006025 IPI:IPI00383381 IPI:IPI01022779
RefSeq:NP_055521.1 UniGene:Hs.584842 PDB:2DO4 PDBsum:2DO4
ProteinModelPortal:Q15020 SMR:Q15020 IntAct:Q15020
MINT:MINT-2867335 STRING:Q15020 PhosphoSite:Q15020 DMDM:74762140
PaxDb:Q15020 PeptideAtlas:Q15020 PRIDE:Q15020
Ensembl:ENST00000228284 Ensembl:ENST00000546611
Ensembl:ENST00000546728 GeneID:9733 KEGG:hsa:9733 UCSC:uc001tmy.1
UCSC:uc001tnb.3 CTD:9733 GeneCards:GC12M108915 HGNC:HGNC:16860
HPA:HPA044322 MIM:175900 MIM:611684 neXtProt:NX_Q15020
Orphanet:79152 PharmGKB:PA34948 HOGENOM:HOG000063708
HOVERGEN:HBG053888 InParanoid:Q15020 OMA:SQAVMKM OrthoDB:EOG4RXXZG
PhylomeDB:Q15020 ChiTaRS:SART3 EvolutionaryTrace:Q15020
GenomeRNAi:9733 NextBio:36616 ArrayExpress:Q15020 Bgee:Q15020
CleanEx:HS_SART3 Genevestigator:Q15020 GermOnline:ENSG00000075856
Uniprot:Q15020
Length = 963
Score = 399 (145.5 bits), Expect = 5.7e-44, Sum P(2) = 5.7e-44
Identities = 99/351 (28%), Positives = 171/351 (48%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 305 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 364
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW IS FEK+L F +Y++++
Sbjct: 365 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 424
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 425 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 482
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 483 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 540
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER G+LED+D +VQK RL E R+ +++E+ + + ++ E
Sbjct: 541 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 600
Query: 309 SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
+K R ++K+ + P KR + + D+E++ + EN
Sbjct: 601 --RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVEN 649
Score = 120 (47.3 bits), Expect = 5.7e-44, Sum P(2) = 5.7e-44
Identities = 48/176 (27%), Positives = 79/176 (44%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 804 FISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 862
Query: 455 QMFLGKKL-SIARSNPKQRK---DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
M + + + +A SNP QRK +AP Q G G ++ S + + Q
Sbjct: 863 GMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQ- 921
Query: 511 RGRGDSVQLKGKNTFAVPRNVRPLGFPAIK-PKTEEGEDLKPK-SNDEFRKMFIKK 564
R + + +N P PA+ P E PK SN +F K+F++K
Sbjct: 922 --RPSAAAPQAENG--------PAAAPAVAAPAATEA----PKMSNADFAKLFLRK 963
Score = 79 (32.9 bits), Expect = 2.7e-09, Sum P(4) = 2.7e-09
Identities = 26/114 (22%), Positives = 60/114 (52%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQK 335
++++ LE+ + + E++ L +Q+ + +K ++ + ++ A+ +K
Sbjct: 551 TMERTEGSLEDWDIAVQKTETR-LARVNEQRMKAAEKEAALVQQEEEKAE-QRKRARAEK 608
Query: 336 HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP-KKQPIKDAVP--GRTK 386
A +K KK+ EKR A+E++ +E EEQP K++ +++++P G T+
Sbjct: 609 KALKKKKKIRGPEKRG----ADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQ 658
Score = 64 (27.6 bits), Expect = 2.7e-09, Sum P(4) = 2.7e-09
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNV--VRDVYSRA 84
Q D V L+E+A+ D+ + ++WL+Y QY + + G + VR V+ RA
Sbjct: 161 QDGLDREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERA 213
Score = 56 (24.8 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LEEQ+S ++ D + L+ E G+ +V++ ++ FP++ +LWL++
Sbjct: 101 LEEQLSI-NVYDYNCHVDLIRLLRLE---GELTKVRMARQKMSEIFPLTEELWLEWLHDE 156
Query: 68 DKTLKVG---NVVRDVYSRATKN--CP--WV 91
+ G V D++ +A K+ CP W+
Sbjct: 157 ISMAQDGLDREHVYDLFEKAVKDYICPNIWL 187
Score = 53 (23.7 bits), Expect = 8.4e-08, Sum P(3) = 8.4e-08
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD 198
DGL R ++ + V DY + + Y + GL ++ + + S+G
Sbjct: 162 DGLDREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLH 220
Query: 199 MVSARGVWERLLKISGAMLEA 219
M +WE + A++EA
Sbjct: 221 MTKGLALWEAYREFESAIVEA 241
Score = 47 (21.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 24/96 (25%), Positives = 44/96 (45%)
Query: 155 LDYSLIRETFQRA-SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213
LD + + F++A DY+ + G Y+ + Q G + V R V+ER L
Sbjct: 164 LDREHVYDLFEKAVKDYICPNIWLEYGQ---YSVGG-IGQKGGLEKV--RSVFERALSSV 217
Query: 214 G-------AMLEAWQSYISMEIELDHINEARSIYKR 242
G A+ EA++ + S +E + + S+++R
Sbjct: 218 GLHMTKGLALWEAYREFESAIVEAARLEKVHSLFRR 253
Score = 44 (20.5 bits), Expect = 2.7e-09, Sum P(4) = 2.7e-09
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 207 ERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242
E LL+ L +Q+YI E+++ + I++R
Sbjct: 300 EALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFER 335
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 368 (134.6 bits), Expect = 4.7e-39, Sum P(2) = 4.7e-39
Identities = 102/345 (29%), Positives = 162/345 (46%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ K +Y Y+ +E +GDP R+QL+YERA+ + + DLW Y QYLD+ LKV +V
Sbjct: 243 AETPKLAEYQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLDRQLKVKELV 302
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
+ RA +NCPW LW+ IS +FEK+L F +Y++++
Sbjct: 303 LSAHDRAVRNCPWTVGLWIQYLLAMERHGVDHCIISDMFEKALNAGFIQATDYVEIWQAY 362
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGLLRLYAYWAH-L 191
+D LRRR+ F+ + L+ +R F RA +YL ++++ D + WA +
Sbjct: 363 LDYLRRRVDFTQDSSKELEE--LRSAFARAVEYLKQEVEERFSESGDPSCTIMQNWAREI 420
Query: 192 EQSMGKDMVSARGVWERLLKISGAMLEA--WQSYISMEIELDHINEARSIYKRCYSKRFT 249
KD + +W LL G +A + Y ++E R R + T
Sbjct: 421 WLDWLKDEIKMASLWYDLLS-QGMPKDANMGREYYNLERAHGDTQHCRKALHRAV--QCT 477
Query: 250 GTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQK 306
E +C L ER GTLED+D +VQK RL E R ++ SK E+ +
Sbjct: 478 SDYPEHVCEVLLTLERIEGTLEDWDAAVQKTENRLARVNEQRAKLRRKPSKLNKENMSFQ 537
Query: 307 EHSVKKTGREKRKSDSN-ISYEQSPAKRQKHAPQKPKK-VHDKEK 349
HS + ++ K D + + E+ + P+KP + KEK
Sbjct: 538 FHSSAEQPSKRHKGDGDGLLLEEE----MESGPEKPDHPTNQKEK 578
Score = 128 (50.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 63/270 (23%), Positives = 107/270 (39%)
Query: 202 ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261
AR +W LK M W +S + D N R Y +R G D H
Sbjct: 417 AREIWLDWLKDEIKMASLWYDLLSQGMPKD-ANMGREYYNL---ERAHG----DTQHCRK 468
Query: 262 RFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSD 321
R D+ V +V LE R+ + ++ + + + + V + + R+
Sbjct: 469 ALHRAVQCTSDYPEHVCEVLLTLE--RIEGTLEDWDAAVQKTENRLARVNEQRAKLRRKP 526
Query: 322 SNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPI---K 378
S ++ E + A Q P K H + + L EE E K K++P K
Sbjct: 527 SKLNKENMSFQFHSSAEQ-PSKRHKGDGDGLL-LEEEMESGPEKPDHPTNQKEKPSTSRK 584
Query: 379 DAVPGRTKGFTDECTAFLSNINLKATYED--LRRFFSDVGGVSSIR-ILHDKFTGKSRGL 435
D D T F+SN++ T + L+ F G VS +R + +K G RG
Sbjct: 585 DVPKVLHDSSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGY 642
Query: 436 AYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
YV+F D++ A+ ++++ G+ + ++
Sbjct: 643 CYVEFKDEKSALQALGMDRKVVEGRPMFVS 672
Score = 117 (46.2 bits), Expect = 4.7e-39, Sum P(2) = 4.7e-39
Identities = 46/173 (26%), Positives = 76/173 (43%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V IR++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 698 FISGLPFSCTKEELEDICKAHGNVKDIRLVTNR-AGKPKGLAYVEYENEAQASQAVLKMD 756
Query: 455 QMFLGKK-LSIARSNPKQRK--DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSR 511
+ + + + +A SNP RK D + ++ A Q G G ++ S + + Q +
Sbjct: 757 GLTIKEHVIKVAISNPPLRKLPDKAEAGRASQFAVPRQIYGARGKGRTQLSMMPRALQRQ 816
Query: 512 GRGDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFIKK 564
N A N PA +E E+ K SN +F KM + K
Sbjct: 817 S----------NPVAKAENGMVQNSPATS--SERTEEPKKMSNADFAKMLLNK 857
Score = 73 (30.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQY-LDKTLKVGNV--VRDVYSRA 84
+K + +V L+ERA+ D+ + ++WL+Y QY + + G + VR ++ RA
Sbjct: 82 IKMASEVSEREKVYELFERAVKDY-ICPEIWLEYAQYSIGGIGQEGGIEKVRSIFERA 138
Score = 62 (26.9 bits), Expect = 8.8e-05, Sum P(3) = 8.8e-05
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LEEQ+S ++ + ++ +K + G+ +++ ++ FP++ ++WLD+ +
Sbjct: 26 LEEQLS----INAFDYNCHLDLIKLLRQEGELVKLRRARQKMSELFPLTEEIWLDWLK-- 79
Query: 68 DKTLKVGNV-----VRDVYSRATKN--CPWVGELWV 96
D+ V V +++ RA K+ CP E+W+
Sbjct: 80 DEIKMASEVSEREKVYELFERAVKDYICP---EIWL 112
Score = 41 (19.5 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 207 ERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246
E LL L +Q+YI E++ + IY+R ++
Sbjct: 238 EALLGAETPKLAEYQAYIDFEMKAGDPARIQLIYERALAE 277
>UNIPROTKB|F8VV04 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00386 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396 EMBL:AC008119
HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206 IPI:IPI01022491
ProteinModelPortal:F8VV04 SMR:F8VV04 Ensembl:ENST00000546815
UCSC:uc010swy.1 ArrayExpress:F8VV04 Bgee:F8VV04 Uniprot:F8VV04
Length = 771
Score = 399 (145.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 99/351 (28%), Positives = 171/351 (48%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 323 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 382
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW IS FEK+L F +Y++++
Sbjct: 383 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 442
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL ++++ N G + WA +E
Sbjct: 443 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 500
Query: 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + T
Sbjct: 501 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSD 558
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER G+LED+D +VQK RL E R+ +++E+ + + ++ E
Sbjct: 559 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 618
Query: 309 SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
+K R ++K+ + P KR + + D+E++ + EN
Sbjct: 619 --RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVEN 667
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 309 (113.8 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 96/390 (24%), Positives = 173/390 (44%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL---------- 67
+++ K +Y Y+ +E +GDP R+QL+YERA+ + + DLW Y QYL
Sbjct: 183 AETPKLAEYQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWARYNQYLVRSSPDLTWH 242
Query: 68 -DKTLKVGNVVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFST 126
D+ LKV +V + RA +NCPW LW+ IS +FEK+L F
Sbjct: 243 RDRQLKVKELVLSAHDRAVRNCPWTVGLWIQYLLAMERHGVDHCIISDMFEKALNAGFIQ 302
Query: 127 FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-----DGL 181
+Y++++ +D LRRR+ F+ + L+ +R F RA +YL ++++ D
Sbjct: 303 ATDYVEIWQAYLDYLRRRVDFTQDSSKELEE--LRSAFARAVEYLKQEVEERFSESGDPS 360
Query: 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARS 238
+ WA +E ++ +W +K + ++ W Y+ + +E H + +
Sbjct: 361 CTIMQNWARVEYRHAENPGKILQLWFCKVKANDFEQLVVGLWIQYL-LAMERAH-GDTQH 418
Query: 239 IYKRCY-SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK 297
K + + + T E +C L ER G + LE+ + E++
Sbjct: 419 CRKALHRAVQCTSDYPEHVCEVLLTLERIEGNKLHIISFYSVLLGTLEDWDAAVQKTENR 478
Query: 298 SLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAE 357
L +Q+ + +K R+ + ++ ++ +K A +K KK EKR+ + E
Sbjct: 479 -LARVNEQRAKAAEKEAALARQEEEKAE-QRKQSRAEKKASKKAKKNRIGEKRKADDDDE 536
Query: 358 ENEGRETKQTVEEQPKKQ-PIKDAVPGRTK 386
G+E K + ++ + P K P K
Sbjct: 537 GEWGQEDKDPLRQREHESGPEKPDHPTNQK 566
Score = 144 (55.7 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 49/205 (23%), Positives = 96/205 (46%)
Query: 268 GTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSV-KKTGREKRKSDSNISY 326
GTLED+D +VQK RL + R++ K + ++E + +K R ++K+
Sbjct: 463 GTLEDWDAAVQKTENRLARVNEQRAKAAEKEAALARQEEEKAEQRKQSRAEKKASKKAKK 522
Query: 327 EQSPAKRQKHAPQKPK-KVHDKEK-RQVQNLA-EENEGRETKQTVEEQPKKQPIKDAVPG 383
+ KR+ + + DK+ RQ ++ + E T Q + ++ + +
Sbjct: 523 NRIGEKRKADDDDEGEWGQEDKDPLRQREHESGPEKPDHPTNQKEKPSTSRKDVPKVLHD 582
Query: 384 RTKGFTDECTAFLSNINLKATYED--LRRFFSDVGGVSSIR-ILHDKFTGKSRGLAYVDF 440
+K D T F+SN++ T + L+ F G VS +R + +K G RG YV+F
Sbjct: 583 SSK---DNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCYVEF 637
Query: 441 IDDEHLAAAVAKNKQMFLGKKLSIA 465
D++ A+ ++++ G+ + ++
Sbjct: 638 KDEKSALQALGMDRKVVEGRPMFVS 662
Score = 99 (39.9 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V IR++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 688 FISGLPFSCTKEELEDICKAHGNVKDIRLVTNR-AGKPKGLAYVEYENEAQASQAVLKMD 746
Query: 455 QMFLGKK-LSIARSNPKQRK 473
+ + + + +A SNP RK
Sbjct: 747 GLTIKEHVIKVAISNPPLRK 766
Score = 73 (30.8 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQY-LDKTLKVGNV--VRDVYSRA 84
+K + +V L+ERA+ D+ + ++WL+Y QY + + G + VR ++ RA
Sbjct: 31 IKMASEVSEREKVYELFERAVKDY-ICPEIWLEYAQYSIGGIGQEGGIEKVRSIFERA 87
>WB|WBGene00007111 [details] [associations]
symbol:B0035.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 EMBL:Z73102
GeneTree:ENSGT00550000074656 HSSP:P33240 InterPro:IPR008669
Pfam:PF05391 eggNOG:NOG321927 OMA:SQAVMKM PIR:T18650
RefSeq:NP_502136.1 ProteinModelPortal:Q17430 SMR:Q17430
STRING:Q17430 PaxDb:Q17430 EnsemblMetazoa:B0035.12.1
EnsemblMetazoa:B0035.12.2 EnsemblMetazoa:B0035.12.3 GeneID:178053
KEGG:cel:CELE_B0035.12 UCSC:B0035.12.1 CTD:178053 WormBase:B0035.12
HOGENOM:HOG000017964 InParanoid:Q17430 NextBio:899522
Uniprot:Q17430
Length = 836
Score = 247 (92.0 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 80/318 (25%), Positives = 138/318 (43%)
Query: 3 NARAHLEEQISR-QDLSDSE--KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL 59
N+ +EQ+S+ ++L E K Q + +E+ SG P R+++ +ER +++ +
Sbjct: 224 NSTMRQKEQLSKFEELIQQEETKKQGLKQFFDHEKKSGIPSRIKMAHERLVSELDDDEEA 283
Query: 60 WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKS 119
W+ Y + D LK+ V VYSRA ++CP+ L I ++E++
Sbjct: 284 WIAYGAWADIELKLPQVAVKVYSRALRHCPYSFVLHQQALLAFERDRRPNEEIDALWERA 343
Query: 120 LLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT- 178
++ EE L+ T LRRRI +G DYS + E F + L E
Sbjct: 344 RSNVINSAEEGRSLYRTYAFLLRRRIHLTGSS----DYSPMAEVFDEGAALLREWFSMAW 399
Query: 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-GAMLEAWQSYISMEIELDHINEAR 237
D A+ S+ K+M R +W +L G W + +E + AR
Sbjct: 400 DTTADYRQMQAYFYASLMKNMDKCRNIWNDILASGFGRFAGKWIEAVRLERQFGDKENAR 459
Query: 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQE-- 295
+ + +I +++FERE GTL + D ++KV ++ R R Q++
Sbjct: 460 KYLNKALNS--VSDNINEIYMYYVQFEREEGTLAELDLVLEKVNSQVAH-RAIRPQKKVS 516
Query: 296 SKSLPESADQKEHSVKKT 313
K P +++H K+T
Sbjct: 517 EKPAPAPKSKQDHIQKRT 534
Score = 140 (54.3 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 59/227 (25%), Positives = 105/227 (46%)
Query: 276 SVQKVTPRLEELR-LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQ 334
+VQK P E+ R +F S + + + Q V R RK++S++ + + A
Sbjct: 581 AVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASI-RFARKANSDLVH-RGFAYVV 638
Query: 335 KHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTA 394
QK ++ K++ V+ GR + + K+ K + ++
Sbjct: 639 MENDQKAQQALLKDRVPVK-------GRPMFISANDPEKRVGFKFSTT------LEKSKV 685
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
F+ N++ +AT ++L+ FS G V+S+R + K GK +G+A+VDF + VA +
Sbjct: 686 FVRNVHFQATDDELKALFSKFGTVTSVRRVTHK-DGKPKGIAFVDFDTEASAQKCVASGD 744
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASK 500
K M ++L +A SNP +KD S + P S ++ G A+K
Sbjct: 745 KLMLRERELEVALSNPPVKKDKSHGK-PAAIGASLEEDGPRKGHAAK 790
Score = 64 (27.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 481 PTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKN-TFAVPRNVRPLGFPAI 539
P ++ +SH G A+ +S+E +G +QL + T P+ L +
Sbjct: 761 PVKKDKSH------GKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDV 814
Query: 540 KPKTEEGEDLKPKSNDEFRKMFIK 563
T + P SND+FRKMF+K
Sbjct: 815 SEGTSTSQ---PLSNDQFRKMFMK 835
Score = 37 (18.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 270 LEDFDHSVQKVTPRL 284
+ED D +QK+ ++
Sbjct: 15 MEDLDEEIQKIKQKM 29
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 206 (77.6 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 41/116 (35%), Positives = 65/116 (56%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 305 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 364
Query: 78 RDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEK--SLLCAFSTFEEYL 131
V++RA +NCPW LW IS ++ L AF+ EYL
Sbjct: 365 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISDSSKELEELRAAFTRALEYL 420
Score = 194 (73.4 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 76/329 (23%), Positives = 143/329 (43%)
Query: 46 YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD--VYSRA-TKNCPWVGELWVXXXXXX 102
YE A+ + +Y Y+D +K+G+ R ++ RA +NC V +LW+
Sbjct: 298 YEEALLQ--AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENC-LVPDLWIRYSQYL 354
Query: 103 XXXXXXXXXISTVFEKSLL-CAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159
+ +V +++ C ++ + YL L + R G+ +++ E L+
Sbjct: 355 DRQLKVKDLVLSVHNRAIRNCPWTVALWSRYL-LAMER-HGVDHQVISDSSKE--LEE-- 408
Query: 160 IRETFQRASDYLSEQMK---NTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG 214
+R F RA +YL ++++ N G + WA +E + +M AR +W+ ++
Sbjct: 409 LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGN 468
Query: 215 AML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273
A W Y ++E R R + T E +C L ER G+LED+
Sbjct: 469 AKYANMWLEYYNLERAHGDTQHCRKALHRAV--QCTSDYPEHVCEVLLTMERTEGSLEDW 526
Query: 274 DHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSP 330
D +VQK RL E R+ +++E+ + + ++ E +K R ++K+ + P
Sbjct: 527 DIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ--RKRARAEKKALKKKKKIRGP 584
Query: 331 AKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
KR + + D+E++ + EN
Sbjct: 585 EKRGADEDDEKEWGDDEEEQPSKRRRVEN 613
Score = 120 (47.3 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 48/176 (27%), Positives = 79/176 (44%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 768 FISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 826
Query: 455 QMFLGKKL-SIARSNPKQRK---DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
M + + + +A SNP QRK +AP Q G G ++ S + + Q
Sbjct: 827 GMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQ- 885
Query: 511 RGRGDSVQLKGKNTFAVPRNVRPLGFPAIK-PKTEEGEDLKPK-SNDEFRKMFIKK 564
R + + +N P PA+ P E PK SN +F K+F++K
Sbjct: 886 --RPSAAAPQAENG--------PAAAPAVAAPAATEA----PKMSNADFAKLFLRK 927
Score = 97 (39.2 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 50/204 (24%), Positives = 87/204 (42%)
Query: 278 QKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKT----GREKRKSDSNISYEQSPAKR 333
Q++ +E L + ++E + A ++ ++KK G EKR +D + E +
Sbjct: 543 QRMKAAEKEAALVQQEEEKAEQRKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEE 602
Query: 334 QKHAPQKPKKVHDK--EKRQVQNLAEENEGRETK-QTVE-EQPKKQPIKDAVPGRTK--- 386
++ P K ++V + + QN+ E G K V+ E P KQ K A R
Sbjct: 603 EQ--PSKRRRVENSIPAAGETQNV-EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKV 659
Query: 387 ---GFTDECTAFLSNINLKATYED--LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFI 441
D T F+SN+ D LR F G V IR + G RG YV+F
Sbjct: 660 LHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFK 718
Query: 442 DDEHLAAAVAKNKQMFLGKKLSIA 465
+++ A+ +++ G+ + ++
Sbjct: 719 EEKSALQALEMDRKSVEGRPMFVS 742
Score = 79 (32.9 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 26/114 (22%), Positives = 60/114 (52%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQK 335
++++ LE+ + + E++ L +Q+ + +K ++ + ++ A+ +K
Sbjct: 515 TMERTEGSLEDWDIAVQKTETR-LARVNEQRMKAAEKEAALVQQEEEKAE-QRKRARAEK 572
Query: 336 HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP-KKQPIKDAVP--GRTK 386
A +K KK+ EKR A+E++ +E EEQP K++ +++++P G T+
Sbjct: 573 KALKKKKKIRGPEKRG----ADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQ 622
Score = 64 (27.6 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNV--VRDVYSRA 84
Q D V L+E+A+ D+ + ++WL+Y QY + + G + VR V+ RA
Sbjct: 161 QDGLDREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERA 213
Score = 56 (24.8 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYL 67
LEEQ+S ++ D + L+ E G+ +V++ ++ FP++ +LWL++
Sbjct: 101 LEEQLSI-NVYDYNCHVDLIRLLRLE---GELTKVRMARQKMSEIFPLTEELWLEWLHDE 156
Query: 68 DKTLKVG---NVVRDVYSRATKN--CP--WV 91
+ G V D++ +A K+ CP W+
Sbjct: 157 ISMAQDGLDREHVYDLFEKAVKDYICPNIWL 187
Score = 53 (23.7 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD 198
DGL R ++ + V DY + + Y + GL ++ + + S+G
Sbjct: 162 DGLDREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLH 220
Query: 199 MVSARGVWERLLKISGAMLEA 219
M +WE + A++EA
Sbjct: 221 MTKGLALWEAYREFESAIVEA 241
Score = 47 (21.6 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 24/96 (25%), Positives = 44/96 (45%)
Query: 155 LDYSLIRETFQRA-SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213
LD + + F++A DY+ + G Y+ + Q G + V R V+ER L
Sbjct: 164 LDREHVYDLFEKAVKDYICPNIWLEYGQ---YSVGG-IGQKGGLEKV--RSVFERALSSV 217
Query: 214 G-------AMLEAWQSYISMEIELDHINEARSIYKR 242
G A+ EA++ + S +E + + S+++R
Sbjct: 218 GLHMTKGLALWEAYREFESAIVEAARLEKVHSLFRR 253
>DICTYBASE|DDB_G0291836 [details] [associations]
symbol:DDB_G0291836 "Squamous cell carcinoma antigen
recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
Length = 949
Score = 162 (62.1 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 52/220 (23%), Positives = 98/220 (44%)
Query: 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215
D L++ F+ ++ +S N + Y Y A E D+ R + + +L I +
Sbjct: 506 DKQLMKSLFETMNNQMSTIDVNNYTTVDRYMYIAQFEWRQFNDLSRYREIVDYVLSIDPS 565
Query: 216 MLEAWQSYISMEIELDHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFD 274
W YIS E+E R ++K+ S RF S I W FER YG + +
Sbjct: 566 QYWIWCQYISFEMEQKQFQSVRELFKKASSHIRFDDPSSR-IWQDWFTFERGYGDINQY- 623
Query: 275 HSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQ 334
+ V+ R ++ ++++ + L + Q++ ++ R K K D E+ +K+Q
Sbjct: 624 ---RAVSDRYSIIQNKYNKEQERYLQQQQQQQQKQQQQNKR-KEKDDGKNKDEKRISKKQ 679
Query: 335 KHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKK 374
K+ K K D+ K+ + +++ + +E ++ PKK
Sbjct: 680 KNENHKEKGDQDEFKKPLPPTSKKEKEKE-----KDLPKK 714
Score = 116 (45.9 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 40/142 (28%), Positives = 65/142 (45%)
Query: 393 TAFLSNINLKATYEDLRRFF--SDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV 450
T F++N++ E L +F + V G+ IR++ K+R AY+D ID E+L A+
Sbjct: 824 TVFINNLSPSVNKEKLEQFLRHNGVTGIKDIRVVL-----KARPFAYIDLIDKENLKKAL 878
Query: 451 AKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
+ +K+ FL K +++ S P SS +P + N T S + E K+
Sbjct: 879 SLDKKYFLSKLINVNLSKPP----SS--ISPANNNNDNNNNNNNNTITSNGNDTEFIKEI 932
Query: 511 RGRGDSVQLKGKNTFAVPRNVR 532
R K T VPR ++
Sbjct: 933 PSR--------KPTLLVPRGIK 946
Score = 113 (44.8 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E + + D K+++Y+ + K +Q + P RV L+ER + F +W Y
Sbjct: 310 REPFEIALKEKKYLDQRKWKEYIEFEKQQQHNDKPMRVATLFERQLKSFSNHFSIWSFYL 369
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
YL+K ++ V+SR+ ++ + GE W
Sbjct: 370 TYLEKFTNFKDLHLKVFSRSLRSIYYSGEHW 400
Score = 110 (43.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 29/150 (19%), Positives = 68/150 (45%)
Query: 327 EQSPAKRQKHAPQKPKKVHDKEK-RQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRT 385
+Q ++QK Q +K D K + + ++++ + K+ ++ K+P+
Sbjct: 646 QQQQQQQQKQQQQNKRKEKDDGKNKDEKRISKKQKNENHKEKGDQDEFKKPLPPTSKKEK 705
Query: 386 KGFTD-ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
+ D + N++ DL + F G + S++++ DK GKS+G+ ++ + E
Sbjct: 706 EKEKDLPKKLIILNLSFDTAEPDLHKIFDKYGQIKSLKLVLDK-NGKSKGICFILYKSHE 764
Query: 445 HLAAAVAKNKQMFLGKKLSIARSNPKQRKD 474
A+ ++Q+ + + + S +Q D
Sbjct: 765 SANKALEMDQQIIKNRTICVQYSKDQQIND 794
Score = 60 (26.2 bits), Expect = 7.8e-17, Sum P(3) = 7.8e-17
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 3 NARAHLEEQISRQDLSDS-EKFQQYM-----IYL-------KYEQSSGDPGRVQLLYERA 49
NA + +Q + Q L ++ EKFQ I+L KY ++ D + LYE+A
Sbjct: 99 NALSKFTKQSNYQTLREAREKFQSIHPLSQDIWLAWFSDEQKYMKTDNDKQYILSLYEKA 158
Query: 50 ITDFPVSSDLWLDYTQYLDK-TLKVGNVVRDV 80
+ DF +S + + Y +++ K G ++ +V
Sbjct: 159 LNDF-ISVKINVSYCKFIIKINTNSGGLINNV 189
Score = 45 (20.9 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 14 RQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73
R+D EK Y+ L + ++ E+ + P+S D+WL + K +K
Sbjct: 85 REDPYSFEKNLNYINALSKFTKQSNYQTLREAREKFQSIHPLSQDIWLAWFSDEQKYMKT 144
Query: 74 GN---VVRDVYSRA 84
N + +Y +A
Sbjct: 145 DNDKQYILSLYEKA 158
Score = 44 (20.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 34/169 (20%), Positives = 71/169 (42%)
Query: 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250
LEQ G D++ + +W +L + + ++ I R +Y R S G
Sbjct: 200 LEQC-GDDIIESPLLWSEYRMFEQMLLSQIKDDKEKQTQIKII---RDLYHRQLSNPMIG 255
Query: 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK-SLPESADQ-KEH 308
S I + + ++E ++++ +++ EE + ++E K +S Q KE
Sbjct: 256 LHS--IYNDYQQWEHSQ-SIDNNNNNNNNQEKEKEEKE--KEEKEIKLKFEKSLKQFKER 310
Query: 309 SVKKTG-REKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLA 356
+ +EK+ D E ++Q+ KP +V +RQ+++ +
Sbjct: 311 EPFEIALKEKKYLDQRKWKEYIEFEKQQQHNDKPMRVATLFERQLKSFS 359
>FB|FBgn0014024 [details] [associations]
symbol:Rnp4F "RNA-binding protein 4F" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0005737 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0007417 GO:GO:0006396
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
EMBL:Y15249 EMBL:Y15250 EMBL:Y15251 EMBL:AY061395 EMBL:DQ269487
EMBL:DQ269488 EMBL:DQ269489 EMBL:DQ269490 EMBL:DQ269491
EMBL:DQ272384 RefSeq:NP_001096884.1 RefSeq:NP_511047.2
RefSeq:NP_996353.1 UniGene:Dm.2995 ProteinModelPortal:Q9W4D2
SMR:Q9W4D2 STRING:Q9W4D2 PaxDb:Q9W4D2 PRIDE:Q9W4D2
EnsemblMetazoa:FBtr0070752 EnsemblMetazoa:FBtr0070753
EnsemblMetazoa:FBtr0112876 GeneID:31448 KEGG:dme:Dmel_CG3312
CTD:31448 FlyBase:FBgn0014024 eggNOG:NOG321927 InParanoid:Q9W4D2
OMA:LYGDQAD OrthoDB:EOG4Z34VX PhylomeDB:Q9W4D2 GenomeRNAi:31448
NextBio:773694 Bgee:Q9W4D2 GermOnline:CG3312 Uniprot:Q9W4D2
Length = 941
Score = 208 (78.3 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 107/500 (21%), Positives = 205/500 (41%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
+ HL+E D S+ K Y + ++ ++ER++ FP+ LWL Y
Sbjct: 321 KQHLDETTRGWDWSEQHKAHVYDVETLSLDDDLKNAVIRFIFERSVAKFPIVDVLWLSYI 380
Query: 65 QYLD---KTLKVGNVVRDVYSR-ATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSL 120
+++ T+ +V + K +G+ ++ S
Sbjct: 381 EFIQFEGVTVPENEDENEVTAEMVAKRAKRLGKGFLRNTELDLANRGVRSHPSVQLNHRF 440
Query: 121 LCAF--STFE-----EYLDLFLTRI------------DGLRRRILFSGEVEGVLDYSLIR 161
L S FE E + L L RI D L RI + + SL R
Sbjct: 441 LDLMERSDFELAEVDEEIRLILQRIVTDMDMTVELHLDYLAYRIRNTNASDEQQVASL-R 499
Query: 162 ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA- 219
F A + L+ + D + WA +E + + R +W +++ G+ +
Sbjct: 500 AAFNHAWEELTVLYGDQADTRYEVLQLWAQVEYTQLGSPDNGREIWRQIMGYPGSSIRGL 559
Query: 220 -WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278
W ++ ME E + + R + ++ S+ G + + R+ER YGT E + Q
Sbjct: 560 LWLNFAQMESEYNGGHGTRDVLRKALSQPVLENGLM-VQEFFRRYERCYGTYESIA-ACQ 617
Query: 279 KVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAP 338
+ +E ++ RS+ + S +SA ++ +K ++++ + ++ EQ +RQ H
Sbjct: 618 ALDLPVEYVKP-RSRIKPNS--QSAYPRQQKLKPRQQQQQTNREPLNREQR--RRQAHEQ 672
Query: 339 QKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ-PKKQPIKDAVPGRTKGFTDECTAFLS 397
Q+ ++ ++K ++ E G T + + P K++ + F+
Sbjct: 673 QQQQQ--QQQKHGIKKSRTEPSGGATSPPSKVKGPANAEAKESNFKYSPNMEIN-KIFVR 729
Query: 398 NINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM 456
N++ + E+L FS G + +R++H K + +G+AYV+F AVA ++ +
Sbjct: 730 NLHPACSKEELHELFSPFGTIKDVRLVH-KLNKQFKGIAYVEFEKPGEAQRAVAGRDGCL 788
Query: 457 FLGKKLSIARSNPKQRKDSS 476
F G +S+A SNP R S+
Sbjct: 789 FKGMNISVAISNPPPRGTSA 808
Score = 76 (31.8 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 28/114 (24%), Positives = 49/114 (42%)
Query: 454 KQMFLGKKLSIARSNPKQRKDSSG--ERAPTEQAQSHQQTGNAGTSASKESSIETSKQSR 511
+Q KKL + P +S + A +A +Q G+ ++ + ++ +
Sbjct: 830 RQEVAAKKLRLLLPEPGDISSTSASVDVAIKREANGEEQKGDVQERDEQKGEEQKGEEQK 889
Query: 512 GRGDS-VQLKGKNTFAVPRN-VRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFIK 563
G + KG + ++ V G + K EE PKSND+FRK+F+K
Sbjct: 890 GEEPKGEEQKGDDQIGEEQSGVEQKGD---EKKEEEMPAAVPKSNDDFRKLFLK 940
Score = 46 (21.3 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 505 ETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAIKP 541
E + GR D KG N N P G A+KP
Sbjct: 776 EAQRAVAGR-DGCLFKGMNISVAISNPPPRGTSAVKP 811
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 162 (62.1 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 60/235 (25%), Positives = 94/235 (40%)
Query: 18 SDSEKFQQYMIYLKYE--QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGN 75
S + + YM + E +S+ + + LYERAI +P+ +LWL YT +L K +
Sbjct: 265 SANHSLEAYMDLINDESRRSTAELQYITTLYERAIVLYPLIPELWLQYTAWLSKVDFSSS 324
Query: 76 VVRDVYSRATKNCPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLCAFST----FEEYL 131
V RAT+NC W+G +W S V E+ C S F+E +
Sbjct: 325 QASSVAERATRNCSWIGRIW---SIKLTYMTLSGASTSAVCEEKDRCLNSNLLVNFDEVI 381
Query: 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAH 190
D F G + L+ E ++ + DYL + K + D +R+ +
Sbjct: 382 DFF----SGFLKACLYLSSNEDK-PQEFLKHQIHKVEDYLRKNHKGSKDARMRIELSKIY 436
Query: 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQS-YIS-MEIELDHINEA--RSIYK 241
L + D S W + W S YIS M+ + E +S+YK
Sbjct: 437 LYSEIS-DFESVEKCWSDMFHDFQNQALYWISRYISTMKYNPELAAETLKKSLYK 490
Score = 97 (39.2 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 33/122 (27%), Positives = 60/122 (49%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKN 453
+++NI+ K +D+ FF D G V S+RI K + +G YV ++ A+ A
Sbjct: 760 YVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKGFGYVVMTTNQDAENALSAAG 817
Query: 454 KQMFLGKK-LSIARSNPKQRKDSSGERAPTEQ--AQSHQQTGNAGTSASKESSIETSKQS 510
KQ LG + L++ S P++ + + + + A+S + T + S K+S + +S
Sbjct: 818 KQ--LGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKS 875
Query: 511 RG 512
G
Sbjct: 876 LG 877
Score = 91 (37.1 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 42/195 (21%), Positives = 81/195 (41%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQK 335
S K P L L +S ++ P+ Q S+ + + S++ Y+ A+R
Sbjct: 471 STMKYNPELAAETLKKSLYKNVDQPQLLFQFYQSIMDLNNDCFTNTSHL-YDVLNAQRIS 529
Query: 336 HAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP------IKDAVPGRTKGFT 389
Q ++ K+ V+N E + + T K++P K + P
Sbjct: 530 FKRQLDSFA-EETKQTVEN-TEPLKVPQADDTAALSKKRKPGQEGDVFKKSKPIEQHRNR 587
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
+E T ++N+ + +L+ FF D G + I IL D K +A ++F + + AA
Sbjct: 588 EELTVLVTNLPSDISENELKIFFKDCGNIIRIFILEDN--QKDVKVAQIEFSETSEVLAA 645
Query: 450 VAKNKQMFLGKKLSI 464
++ + G ++S+
Sbjct: 646 KTRDLKSIRGHEISV 660
Score = 64 (27.6 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 551 PKSNDEFRKMFIK 563
PKSND+FRKMF+K
Sbjct: 1002 PKSNDDFRKMFLK 1014
Score = 53 (23.7 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 53 FPVSSDLWLDY 63
FP+S DLW+DY
Sbjct: 73 FPLSEDLWVDY 83
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 135 (52.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 64/248 (25%), Positives = 106/248 (42%)
Query: 4 ARAHLEEQISRQDLSDSEKFQQYMI---YLKYEQSSGDPGR------VQLLYERAITDFP 54
AR LE ++ R ++ Q++ I Y+++E + R + +Y+RA+ F
Sbjct: 443 AREDLEIRL-RNAAESGDRAQEWAIFGEYIEWELNRNRRRRNTNFELINAIYQRAVLRFQ 501
Query: 55 VSSDLWLDYTQYL-DKTLKVGNVVRDVYS---RATKNCPWVGELWVXXXXXXXXXXXXXX 110
+++W DY +L D+++ GN S RAT++CP G LW
Sbjct: 502 TDANIWEDYIMFLIDESMH-GNAHPTTISALDRATRHCPGSGTLWSQYLLSSEREGQPFT 560
Query: 111 XISTVFEKSL---LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL--IRETFQ 165
I+ + K+ L EE L + LRRR S + LD + IR +
Sbjct: 561 KIADIKHKATSTGLLDVGGMEEVLKVHTAWCSYLRRRAFLSEATDEDLDVAEVGIRSAIE 620
Query: 166 RASDYLSEQM--KNTDG--LLRLYA-YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220
+ L E+ ++ +G L RL Y +L +S D SAR ++ L+ G E W
Sbjct: 621 SVQE-LGEKKYGRSYEGDPLFRLERIYIRYLSESGSWD--SARETFKGLMGRRGNSYEFW 677
Query: 221 QSYISMEI 228
+Y E+
Sbjct: 678 LTYYHWEL 685
Score = 123 (48.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 396 LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQ 455
+SN+N A+ +DL+ FS G V +R L K G S+G YV F E AA+A ++Q
Sbjct: 1000 VSNVNWSASEDDLKELFSRFGTVELVR-LPRKVDGGSKGFGYVVFSSKEEATAALAMHEQ 1058
Query: 456 MFLGKKLSIARSNPKQRK 473
F G+ L + S P+ K
Sbjct: 1059 EFRGRPLHVKVSAPQGAK 1076
Score = 101 (40.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 32/140 (22%), Positives = 64/140 (45%)
Query: 331 AKRQKHAPQKPKKVHDKEKRQVQNLAE-ENEGRETKQTVEEQPKKQPIKD-----AVPGR 384
A+RQ+ A + + + Q ++ E RE + T P K+ D A P
Sbjct: 762 ARRQREAQEAAAQQAAAAATETQEASQSEKRKREDESTANGLPTKRARADRASVEAEPVA 821
Query: 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
+ + T + N+ T +R+FF D G ++ ++++ + GKS +A ++F +
Sbjct: 822 LRRDRENSTVVVKNLPQGTTEHKVRQFFRDCGAINGVKMMPGE-DGKSE-VAMIEFNTRD 879
Query: 445 HLAAAVAKNKQMFLGKKLSI 464
AAA ++++ F G + +
Sbjct: 880 DAAAAQTRDQKTFDGNTIQV 899
Score = 67 (28.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 32/128 (25%), Positives = 55/128 (42%)
Query: 436 AYVDFIDDEHL--AAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGN 493
A V++ D H AA + +++ G+KL I + K S+ ++AP + + + +
Sbjct: 1153 AIVEYADVNHAGKAALELEGQEITPGRKLHIGTVG-EMLKQSAEKKAPVQAPKPKDKPKS 1211
Query: 494 AGTSASKESSIETSKQSRGR-GDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPK 552
+ + + + I+ Q GR G L K A P + + EG K
Sbjct: 1212 SFLTPT--APIKRPPQPGGRSGKRGHLGVKRGTAQPTSTTTTMTTTTTNASGEGSK-NQK 1268
Query: 553 SNDEFRKM 560
SND+FR M
Sbjct: 1269 SNDDFRAM 1276
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 175 (66.7 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 52/191 (27%), Positives = 93/191 (48%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQ-----PKKQPIKDAVPGRTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P P+ ++ + + D + ++ N++
Sbjct: 51 KARVREMEEEAEKLKELQNEVEKQMNLSPPPAGPVIMSIEEKIEA--DGRSIYVGNVDYG 108
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKFTG +G AY++F D E + A+A ++ +F G+++
Sbjct: 109 ATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQI 168
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGK 522
+ + S+ +R +A+ + GN + A S T + RGR Q + +
Sbjct: 169 KVGAKRTNRPGISTTDRG-FPRARFRSRGGNFSSRARYYSGY-TPPRGRGRAFRFQDQWR 226
Query: 523 NTFAVPRNVRP 533
T P P
Sbjct: 227 LTTPPPVAAAP 237
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 182 (69.1 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 61/233 (26%), Positives = 112/233 (48%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKR 350
R ++ +S + D++ V++ R+K +SD E+S +R + KP+ D+E+R
Sbjct: 75 RERERHRSSRDK-DRERDKVREGSRDK-ESDR----ERSSKERDRSDRDKPR---DRERR 125
Query: 351 QVQNLAEENEGRETKQ--TVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDL 408
+ + + RE K+ VE ++ K P D+ T F + LKAT D+
Sbjct: 126 EREKRSSSRSRREEKEPEVVERGSRRHRDKKDEP-EADPERDQRTVFAYQMPLKATERDV 184
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468
FFS G V +R++ D+ + +S+G+ Y++F D + A+A + Q+FLG+ + + S
Sbjct: 185 YEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSE 244
Query: 469 PKQR--KDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQL 519
++ + +S T A GN + S E + ++ G + VQL
Sbjct: 245 AEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMS-ELQLRQIFEAFGPVELVQL 296
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 159 (61.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 41/171 (23%), Positives = 82/171 (47%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKK-VHDKEK 349
RS++ KS S + H K++ ++RK + ++S ++ +K + K ++ + +
Sbjct: 31 RSKKRKKSKSRS---RSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSR 87
Query: 350 -RQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDL 408
R+ + R ++ + K P+++ + T D T F + + DL
Sbjct: 88 DRRFRGRYRSPYRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDL 147
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLG 459
FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG
Sbjct: 148 EEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLG 198
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 183 (69.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 69/287 (24%), Positives = 124/287 (43%)
Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE-----DICHAWLRFEREY 267
S + +A Y S + E DH + R I K S+R + + SE D E
Sbjct: 296 SSSSSDASNEYSSSDEERDH--KKRKIRKTNRSRRISRSSSESNSSTDNDKRGTSRSSEE 353
Query: 268 GTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKS-DSNIS- 325
+D ++ R + R + + D+ + REK K D +
Sbjct: 354 KVYSKYDKMKRRDRERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDR 413
Query: 326 YEQSPAKRQKHAPQKPKKVHDKEK---RQVQNLAEENEGRETKQTVE-EQPKKQPIKDA- 380
Y R + ++ +K ++E+ R+ + + ENE ++ E E+ +++ I++
Sbjct: 414 YRDRERDRYRDRERERRKDREREREREREKERIRRENERERLRKERELERERREKIREER 473
Query: 381 --VPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKFTGKSRGLAY 437
+ D+ T + N++LKA D+ FFS+V G V I+ + D+ +GKS+G+AY
Sbjct: 474 RLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAY 533
Query: 438 VDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP-KQRKDSSGERAPTE 483
V+F E + A+A N M + + I S K R + + P +
Sbjct: 534 VEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPID 580
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 183 (69.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 69/287 (24%), Positives = 124/287 (43%)
Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE-----DICHAWLRFEREY 267
S + +A Y S + E DH + R I K S+R + + SE D E
Sbjct: 296 SSSSSDASNEYSSSDEERDH--KKRKIRKTNRSRRISRSSSESNSSTDNDKRGTSRSSEE 353
Query: 268 GTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKS-DSNIS- 325
+D ++ R + R + + D+ + REK K D +
Sbjct: 354 KVYSKYDKMKRRDRERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDR 413
Query: 326 YEQSPAKRQKHAPQKPKKVHDKEK---RQVQNLAEENEGRETKQTVE-EQPKKQPIKDA- 380
Y R + ++ +K ++E+ R+ + + ENE ++ E E+ +++ I++
Sbjct: 414 YRDRERDRYRDRERERRKDREREREREREKERIRRENERERLRKERELERERREKIREER 473
Query: 381 --VPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKFTGKSRGLAY 437
+ D+ T + N++LKA D+ FFS+V G V I+ + D+ +GKS+G+AY
Sbjct: 474 RLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAY 533
Query: 438 VDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP-KQRKDSSGERAPTE 483
V+F E + A+A N M + + I S K R + + P +
Sbjct: 534 VEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPID 580
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 176 (67.0 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 69/274 (25%), Positives = 115/274 (41%)
Query: 262 RFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSD 321
R R +D S ++ R + R R + +S S D++ + RE+R+S
Sbjct: 33 RSNRSRSRSKDRKSSSRRSRSRSRDRRGDRGDRR-RSRSRSKDRRTTRRRSPSRERRRSR 91
Query: 322 SNI--SYEQSPAKRQKHAPQKPKKVHDKE---KRQVQNLAEENE---GRETKQTVEEQPK 373
S + + R + + P + D+ +R + G E + + P+
Sbjct: 92 SRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPR 151
Query: 374 KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
P K+A T D+ T + I DL FFS VG V +RI+ D TG+S+
Sbjct: 152 HSPPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSK 211
Query: 434 GLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRK--DSS-----GERAPTEQAQ 486
G+ YV+F D+E + +A N Q +G L I R+ ++ + +SS G AP +
Sbjct: 212 GICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGP 271
Query: 487 SHQQTGNAGTSASKESSIETSKQSRGRGDSVQLK 520
+H N E I +S GR + + L+
Sbjct: 272 THVLVENLHPKID-EKMIRDIFESFGRIEKIDLE 304
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 151 (58.2 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 355 LAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLKATYEDL 408
+ EE E +E + VE+Q P +A P K D + ++ N++ AT E+L
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468
F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++ +
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 469 PKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 121 TNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 163
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 151 (58.2 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 355 LAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLKATYEDL 408
+ EE E +E + VE+Q P +A P K D + ++ N++ AT E+L
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468
F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++ +
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 469 PKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 121 TNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 163
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 148 (57.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 37/123 (30%), Positives = 70/123 (56%)
Query: 349 KRQVQNL-AEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYED 407
KR+V + +E + RE + T+++Q + +K+ K D + F+ N++ A+ E+
Sbjct: 31 KRRVAEMESEAAKLREMQATLDQQ--SESLKE-----DKEDIDARSIFVGNVDYGASPEE 83
Query: 408 LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA-- 465
++ F G ++ + IL DKFTG+ +G AYV+F + +A A+ N+ +F G+ L +
Sbjct: 84 IQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKVVPK 143
Query: 466 RSN 468
R+N
Sbjct: 144 RTN 146
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 145 (56.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/123 (26%), Positives = 69/123 (56%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYED 407
K++V + EE RE + +++ Q ++ + ++ D + F+ N++ A+ E+
Sbjct: 35 KKRVAEMEEEAAKLREMQASLDSQSQE------LSTESRDDVDSRSIFVGNVDYSASPEE 88
Query: 408 LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA-- 465
++ F G ++ + IL DKFTG+ +G AYV+F + +A A+ N+ +F G+ + ++
Sbjct: 89 IQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVLNESVFKGRNIKVSPK 148
Query: 466 RSN 468
R+N
Sbjct: 149 RTN 151
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 161 (61.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 92 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYG 151
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 152 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 211
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 212 KVIPKRTNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 260
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 167 (63.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 56/214 (26%), Positives = 100/214 (46%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQ 351
S+ ES+S ++++E V+KT +K S + S +S + + D E
Sbjct: 173 SESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSS-SDSES-- 229
Query: 352 VQNLAEENEGRETKQTVEEQPKK--QPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLR 409
++ +E+ + R+ + EE+P K +P +D+ + CT F+ ++ + L
Sbjct: 230 -ESSSEDEKKRKAEPASEERPAKITKPSQDS--------NETCTVFVGRLSWNVDDQWLG 280
Query: 410 RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL-GKKLSIARSN 468
+ F + G + R++ D +G+S+G YVDF E AAVA N + G+ +++ SN
Sbjct: 281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340
Query: 469 PKQRKDSSGERAPTEQAQSHQQTGNAGTSASKES 502
P+ P AQ Q+ GN G S+ S
Sbjct: 341 PRPAN-------PQPYAQ--QRAGNFGDQLSEPS 365
Score = 116 (45.9 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
T F+ N++ AT +DL F G + SIR+ D +G+ +G YV F D + V
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 453 NKQMFLGKKLSIARSNPKQRKDSSGER 479
N G+ + S P+ S G R
Sbjct: 427 NGHFIAGRPCRLDFSTPRTGGGSRGGR 453
Score = 66 (28.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 18/85 (21%), Positives = 39/85 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKR 350
+S++E+K S + + SVKK + K+K +S+ E + + + + E
Sbjct: 53 KSKKEAKRA-SSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESE 111
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQ 375
+ + +E E + V+ + KK+
Sbjct: 112 SSSSESSSSESEE-EVIVKTEEKKE 135
Score = 65 (27.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/95 (21%), Positives = 46/95 (48%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKK---VHDK 347
+ Q++SK ES+ + E + E S+S S +S + + + + ++ V +
Sbjct: 72 KKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTE 131
Query: 348 EKRQVQN-LAEENEGRETKQTVEE-QPKKQPIKDA 380
EK++ + + +E E ++ V + + KK+ D+
Sbjct: 132 EKKESSSESSSSSESEEEEEAVVKIEEKKESSSDS 166
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 161 (61.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 119 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYG 178
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 179 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 238
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 239 KVIPKRTNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 287
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 123 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYG 182
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 183 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 242
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 243 KVIPKRTNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 291
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 123 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYG 182
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 183 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 242
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 243 KVIPKRTNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 291
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 123 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYG 182
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 183 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 242
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 243 KVIPKRTNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 291
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 161 (61.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 123 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYG 182
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 183 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 242
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +A+ +T N +S S+ S S+ RGR
Sbjct: 243 KVIPKRTNRPGISTTDRG-FPRARYRARTTNYNSSRSRFYSGFNSRP-RGR 291
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 124 (48.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 42/161 (26%), Positives = 80/161 (49%)
Query: 365 KQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRIL 424
++T EE+ ++ ++ + GR+ ++ N++ ++T E L FF VG + + IL
Sbjct: 9 QETEEERQERLAKQEEIDGRS--------VYVGNVDYQSTPEQLEEFFHGVGVIERVTIL 60
Query: 425 HDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIA--RSN-PKQRKDSSGERA 480
D+F+G +G AY++F E + A+ + + + F G++L + R+N P R+ G
Sbjct: 61 FDRFSGLPKGYAYIEFEQTESVQKAIDELHGKEFRGRELRVTAKRTNLPGFRR---GRGR 117
Query: 481 PTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKG 521
+A+ + G G + S+ +R GDS Q G
Sbjct: 118 GGFRARGRGRGGFRGRGRGRGGF--NSRGTRN-GDSEQADG 155
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 347 KEKRQVQNLAEENEGRETKQ 366
+EK +VQ EE + R KQ
Sbjct: 3 EEKVRVQETEEERQERLAKQ 22
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 48/171 (28%), Positives = 87/171 (50%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 119 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYG 178
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKF+G +G AY++F D E + ++A ++ +F G+++
Sbjct: 179 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 238
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+ + S+ +R +++ +T N +S S+ S S+ RGR
Sbjct: 239 KVIPKRTNRPGISTTDRG-FPRSRYRARTTNYNSSRSRFYSGFNSRP-RGR 287
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 156 (60.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/172 (28%), Positives = 84/172 (48%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 114 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYG 173
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKFTG +G AY++F D E + ++A ++ +F G+++
Sbjct: 174 ATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQI 233
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRG 514
+ PK R + G + T++ + +S S S + R RG
Sbjct: 234 KVV---PK-RTNRPGI-STTDRGFPRARYRARASSYSSRSRFYSGYTPRPRG 280
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 49/172 (28%), Positives = 84/172 (48%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 113 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYG 172
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DKFTG +G AY++F D E + ++A ++ +F G+++
Sbjct: 173 ATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 232
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRG 514
+ PK R + G + T++ + +S S S + R RG
Sbjct: 233 KVV---PK-RTNRPGI-STTDRGFPRARYRARASSYSSRSRFYSGYTPRPRG 279
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 161 (61.7 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNIS---YEQSPAKRQKHAPQKPKKVHD-KE 348
++E SL + +E+ K E ++ NIS + +S + R K + P+ V + KE
Sbjct: 220 EEEMMSLGDLPTNEENKDKNESGENLAANENISDLEWLKSRSTRIKENGEVPEIVPEVKE 279
Query: 349 KRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDL 408
+V + ++++ E + T EEQ Q I++ GR F+ NI+ +A+ ED
Sbjct: 280 VNEVTEVTQQSDN-EPELTPEEQIA-QKIEET--GRL---------FIRNISYEASEEDF 326
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARS 467
R FS G + + I D TGKS+G YV F+ E A +KQ+F G+ L I +
Sbjct: 327 RSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPA 386
Query: 468 NPKQ 471
+ K+
Sbjct: 387 DKKK 390
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 158 (60.7 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 66/270 (24%), Positives = 120/270 (44%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKR 350
RS++ S+S +D++ + G + R SN Y + + + + + P D+ R
Sbjct: 80 RSRKRSRS--RDSDRRRARRDRHGDDYR---SNGDYYRGGGRARTRS-RSP--YDDRYYR 131
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQP-IKDAVPGRTKGFTDECTAFLSNINLKATYEDLR 409
+ E + E +P+K+ +D P + D T F+ + + ++L
Sbjct: 132 PSGRSRRDERDEERRPRREREPRKRSDSRDRSPELNEDERDRRTIFVQQLAARLRTKELI 191
Query: 410 RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLG----KKLSIA 465
FF VG V +I+ D+ +G+S+G+ YV+F D+ +A A+ Q LG +L+ A
Sbjct: 192 AFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQLTGQKLLGIPIIAQLTEA 251
Query: 466 RSNPKQRKDSSGERAPTEQAQSHQ-QTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNT 524
N +Q ++S A H+ GN S E+ +++ + G + VQL+ T
Sbjct: 252 EKN-RQARNSEASSGNKHSAPFHRLYVGNIHFSID-ENDLQSVFEPFGELEFVQLQKDET 309
Query: 525 FAVPRNVRPLGFPAIKPKTEEGEDLKPKSN 554
R+ R GF + + E L+ K N
Sbjct: 310 ---GRS-RGYGFVQFRDPNQAREALE-KMN 334
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 158 (60.7 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 51/208 (24%), Positives = 98/208 (47%)
Query: 295 ESKSLPESADQKEHSVKKTGRE--KRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQ- 351
+S+S S D+ S R R Y +SP +H+ + ++ ++ R
Sbjct: 141 QSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSR-RRYEERSSRSS 199
Query: 352 ------VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATY 405
++L +++ E K++ +P+++ K + R D T F+S + + T
Sbjct: 200 RAHDYDYEDLRDDDRSHERKRS-RSRPRERSSKLSEEER-----DRRTVFVSQLANRLTS 253
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGK----K 461
+L FF G V +I+ DK +G+S+G+AYV+F ++ + AA+A + + LG +
Sbjct: 254 RELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQ 313
Query: 462 LSIARSNPKQRKDSSGERAPTEQAQSHQ 489
L+ A N K R+ + RA + + H+
Sbjct: 314 LTEAEKNRKAREAAELARAASAEIPFHR 341
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 152 (58.6 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 48/172 (27%), Positives = 84/172 (48%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIK-DAVPG----RTKGFTDECTAFLSNINLK 402
K +V+ + EE E +E + VE+Q P +A P K D + ++ N++
Sbjct: 114 KARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYG 173
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
AT E+L F G V+ + IL DK+TG +G AY++F D E + ++A ++ +F G+++
Sbjct: 174 ATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 233
Query: 463 SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRG 514
+ PK R + G + T++ + +S S S + R RG
Sbjct: 234 KVV---PK-RTNRPGI-STTDRGFPRARYRARASSYSSRSRFYSGYTPRPRG 280
>UNIPROTKB|Q5QP23 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 HOVERGEN:HBG057646
TIGRFAMs:TIGR01622 UniGene:Hs.282901 HGNC:HGNC:15923
HOGENOM:HOG000236253 ChiTaRS:RBM39 IPI:IPI00647282 SMR:Q5QP23
STRING:Q5QP23 Ensembl:ENST00000374038 Uniprot:Q5QP23
Length = 231
Score = 147 (56.8 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 42/185 (22%), Positives = 83/185 (44%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYE 406
+ ++ R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKIGLPHSIKLRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPR 166
Query: 407 DLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 167 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQA 226
Query: 467 SNPKQ 471
S ++
Sbjct: 227 SQAEK 231
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 130 (50.8 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 37/139 (26%), Positives = 71/139 (51%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ FL N+ + +R F+D G V ++RI+ D+ +G +G YV F + + + A+
Sbjct: 253 SVFLGNLAYDISDSAVREHFADCGDVVAVRIVRDRQSGMGKGFGYVLFENTDAVHLALKL 312
Query: 453 NKQMFLGKKLSIARSNPK----QRKDSSGERAPTEQAQS--HQQTGNAGTSASKESSI-- 504
N +G+KL + R K QR +S R P ++AQS + G+ + ++++
Sbjct: 313 NNSDLMGRKLRVKRCVEKGRAPQRSTTSRPRGPMDRAQSTLRNRRGSHDSFVGEKANPAK 372
Query: 505 ETSKQSRGRGDSVQLKGKN 523
+++K R + + + GKN
Sbjct: 373 KSAKPKRLKSITKKKGGKN 391
Score = 67 (28.6 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 289 LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDK- 347
LFR+ L +KE K+T E + S+ E+ P K +K ++ K +K
Sbjct: 25 LFRAAAPPPVLVAVPRKKEKKRKRTEAEVSEGQSSAVREEPPKKVKKTRKKELSKAEEKL 84
Query: 348 -EKRQVQNLAEENEGRETKQTVEEQPKK 374
+ A+E+E ++ Q+ +Q K+
Sbjct: 85 ASRESALEQADEDEEQKLLQSKAKQKKR 112
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 153 (58.9 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 63/284 (22%), Positives = 127/284 (44%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQ 351
S +S+S S+ E S +T +E+ K S+ S + S + ++ ++ KK KE
Sbjct: 60 SSSDSESSSSSSSDSE-SEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSS 118
Query: 352 VQNLA--------EENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDE-CTAFLSNINLK 402
+ + E+ E + K+ E+ +++ + + + T+E T F+ ++
Sbjct: 119 SDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWS 178
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL-GKK 461
E L++ F +GGV R+++++ T +SRG YVDF + + A+ + + + G+
Sbjct: 179 IDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRP 238
Query: 462 LS--IARSNPKQRKDSSGERAPTEQAQSHQQ-TGNAGTSASKESSIETSKQSRGRGDSVQ 518
++ ++ S P D + + T S GN +A +++ E + G SV+
Sbjct: 239 INCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK-HGEVVSVR 297
Query: 519 LKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFI 562
+ P +P GF ++ ED K K+ D + +I
Sbjct: 298 IPTH-----PETEQPKGFGYVQ--FSNMEDAK-KALDALQGEYI 333
Score = 145 (56.1 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 67/278 (24%), Positives = 124/278 (44%)
Query: 264 EREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSN 323
+ E + D + T + E S +S S E ++KE + K+ +E SDS+
Sbjct: 63 DSESSSSSSSDSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSS 122
Query: 324 ISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPG 383
S S ++ +K ++ +DK KR+ ++ AEE E E+ KKQ ++
Sbjct: 123 SS-SSSDSESEK------EESNDK-KRKSED-AEEEEDEESSN------KKQKNEE---- 163
Query: 384 RTKGFTDE-CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID 442
T+E T F+ ++ E L++ F +GGV R+++++ T +SRG YVDF +
Sbjct: 164 -----TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 218
Query: 443 DEHLAAAVAKNKQMFL-GKKLS--IARSNPKQRKDSSGERAPTEQAQSHQQ-TGNAGTSA 498
+ A+ + + + G+ ++ ++ S P D + + T S GN +A
Sbjct: 219 KSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNA 278
Query: 499 SKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGF 536
+++ E + G SV++ P +P GF
Sbjct: 279 DRDAIFELFAK-HGEVVSVRIPTH-----PETEQPKGF 310
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 144 (55.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 40/138 (28%), Positives = 71/138 (51%)
Query: 346 DKEKRQVQNLAEENEG-RETKQTVEEQPKKQ-PIKDAVPGRTKGFTDECTAFLSNINLKA 403
D+ K++++ + +E RE + VE++ Q P A K D + F+ N++
Sbjct: 44 DEMKKRLKEMEDEAAALREMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYAC 103
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLS 463
T E++++ F G V + IL DKF G+ +G AYV+F++ E + A+ N+ G++L
Sbjct: 104 TPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLK 162
Query: 464 IA--RSNPKQRKDSSGER 479
+ R+N K G R
Sbjct: 163 VLQKRTNVPGLKQFRGRR 180
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA--K 452
++ N+N + DL R F+ G V S +++ D+ TG+SRG +V+ D+ AA+A
Sbjct: 6 YVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLN 65
Query: 453 NKQMFLGKKLSIARSNPKQRKDSSG 477
K+M G+ L + + P +R+ SG
Sbjct: 66 GKEMD-GRNLMVNEARPPERRGGSG 89
>CGD|CAL0002502 [details] [associations]
symbol:orf19.2563 species:5476 "Candida albicans" [GO:0005688
"U6 snRNP" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002502 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000044
EMBL:AACQ01000043 RefSeq:XP_718230.1 RefSeq:XP_718326.1
ProteinModelPortal:Q5A9A2 GeneID:3639977 GeneID:3640129
KEGG:cal:CaO19.10095 KEGG:cal:CaO19.2563 eggNOG:NOG249654
Uniprot:Q5A9A2
Length = 915
Score = 128 (50.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 90/396 (22%), Positives = 168/396 (42%)
Query: 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254
M KD++ + E+ + +L + ++S + + I RS +K K + E
Sbjct: 419 MAKDLIDL--MLEKFNNEAEVLLFGLRYFVSYKTDFGQI---RSYFKNAIHKLDSFDLPE 473
Query: 255 DICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTG 314
+C WL FE+ YG + + SV K L+ L S++ ++ + + D+ KK
Sbjct: 474 KLCDKWLEFEQLYGDINSYMESVAKCEIALKTL----SKKRTRDI--TVDENNQPSKKHK 527
Query: 315 REKRKS-DSNISYEQSPAKRQKH--APQKPKKVHD--KEKRQVQNLA-EENEGRETKQTV 368
RE K D+ ++ + K+ A + D K+ ++ +++ E EG + +
Sbjct: 528 REPTKDIDTETKSRETCTVKVKNIAADTDEHSIRDFFKDCGEIGDISFVEAEG--IRYAI 585
Query: 369 EEQPKKQPIKDAVPGRTKGFT-DECTAF-LSNI-----NLKATYED--LRRFFSDVGGVS 419
+ +Q + A+ K ++ + L N N +T+ ++ F +G V+
Sbjct: 586 FDFENEQQVFSALTKNYKSLDGNKLEVYRLQNALLFVNNYPSTFSQATVKEMFEKIGPVA 645
Query: 420 SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMF----LGKKLS--IARSNPKQR 472
IR ++ + K + YV I +E + + + Q + LG + S I SNP+++
Sbjct: 646 KIRF-PNQTSKKIKRFCYVQMISNEDAQKIIDQYHGQKYDDPNLGGEFSWEIKFSNPEEK 704
Query: 473 KDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVR 532
ER+ A+ + T + + SKE+ E S G + V K + ++
Sbjct: 705 H----ERSSPISARKVKVT-SISFNVSKEA-FEKKFTSCGEIEQVVFP-KAVYEEDGKLK 757
Query: 533 PLGFPAIKP-KTEEGEDLKPKSNDEF---RKMFIKK 564
G AI KT EG + K ND RK+F+ K
Sbjct: 758 SNGGLAIVTYKTTEGVENALKLNDSKWMGRKLFVSK 793
Score = 77 (32.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 6 AHLEEQISRQDLSDSEKF-QQYMIYLKYEQSSG----DPGRVQLLYER---AITDFPVSS 57
A LEE + S+ + Y Y+KY +S+ Q+ YE+ +I P +
Sbjct: 171 AQLEESFNEYSSFISKYYGDDYDKYMKYMKSANKIYSSTKMKQIYYEQFEISIKQSPDNP 230
Query: 58 DLWLDYTQ--YLDKTLKVGNVVRDVYSRA-TKNCPWVGELWV 96
LW+DY + Y + K N V ++ RA +KN W + W+
Sbjct: 231 QLWIDYMESVYSHQKKKDLNPVLAIFERAISKNESW-SQNWI 271
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 27 MIYLKYEQSSGD-PGRVQLLYERAITDFPVSSDLWLDYTQY 66
+IY+ Y SS P +Q ++++ + FP S+ ++ + +Y
Sbjct: 277 LIYIIYGCSSDQRPEWLQFVFQKFLRTFPNSNHVYAESIRY 317
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + ++ N++ +T +DL FS G ++ I IL DKF+G +G AY++F + + AA
Sbjct: 91 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA 150
Query: 450 VAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQ 509
VA ++ +F G+ + + PK R + G + + GN G + +
Sbjct: 151 VAMDETVFRGRTIKVL---PK-RTNMPGISSTDRGGFRGRPRGNRGNY--QRGQRPRGRP 204
Query: 510 SRGRG 514
RGRG
Sbjct: 205 FRGRG 209
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 44/195 (22%), Positives = 89/195 (45%)
Query: 285 EELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKR-----QKHAPQ 339
++ L R ++ S+S +S D+K + R +R+S + S ++ R ++H+ +
Sbjct: 67 QDFPLHRKKR-SRSHSKSRDRKRSRSRDRDRHRRRSSRSRSRDRQRRHRSRSWDRRHSSE 125
Query: 340 KPKKVHDKEKRQVQNLAEENEGRETKQTVEEQ-PKKQPIKDAVPGRTKGFTDECTAFLSN 398
+ +E R GR + +K P+++ + + D T F
Sbjct: 126 SRSRDRRREDRVRYRSPPLATGRRYAHSKSPHFREKSPVREPIDNLSPEERDARTVFCMQ 185
Query: 399 INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL 458
+ + DL FFS VG V +RI+ D+ + +S+G+AYV+F + + + A+ Q L
Sbjct: 186 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLL 245
Query: 459 GKKLSIARSNPKQRK 473
G + + S ++ +
Sbjct: 246 GVPIIVQASQAEKNR 260
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 42/187 (22%), Positives = 85/187 (45%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKR-----QKHAPQKPKKVHDK 347
++ S+S +S D+K + R +R+S + S ++ R ++H+ + + +
Sbjct: 62 KKRSRSHSKSRDRKRSRSRDRDRHRRRSSRSRSRDRQRRHRSRSWDRRHSSESRSRDRRR 121
Query: 348 EKRQVQNLAEENEGRETKQTVEEQ-PKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYE 406
E R GR + +K P+++ + + D T F + +
Sbjct: 122 EDRVRYRSPPLATGRRYAHSKSPHFREKSPVREPIDNLSPEERDARTVFCMQLAARIRPR 181
Query: 407 DLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466
DL FFS VG V +RI+ D+ + +S+G+AYV+F + + + A+ Q LG + +
Sbjct: 182 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 241
Query: 467 SNPKQRK 473
S ++ +
Sbjct: 242 SQAEKNR 248
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 43/190 (22%), Positives = 85/190 (44%)
Query: 286 ELRLFRSQQESKSLP-ESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQK-PKK 343
E R RS++ S E + S + GR + + + + + K PQ PK
Sbjct: 61 ERRRSRSRERKPSRSKERKRSRSRSKDRGGRSRGRKSPFMGQKLNGGPGGKTGPQHFPK- 119
Query: 344 VHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKA 403
H +++ + ++ ++ + K + K P++ + + D T F + +
Sbjct: 120 -HSRKRSRSKSPFKKEKSPFKKDKSPFKKDKSPVRQPIDNLSPEERDARTVFCMQLAARI 178
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLS 463
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG +
Sbjct: 179 RPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPII 238
Query: 464 IARSNPKQRK 473
+ S ++ +
Sbjct: 239 VQASQAEKNR 248
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D T ++ N+ +A +R FS+ G V S+R++ DK TGK RG +V+ D+ A
Sbjct: 69 DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKAI 128
Query: 450 VAKNKQMFLGKKLSI--ARSNPKQRKDSS 476
A N F + L + A+ P++ +D++
Sbjct: 129 SALNDTEFQQRTLKVREAKERPERTEDNN 157
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D T ++ N+ +A +R FS+ G V S+R++ DK TGK RG +V+ D+ A
Sbjct: 69 DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKAI 128
Query: 450 VAKNKQMFLGKKLSI--ARSNPKQRKDSS 476
A N F + L + A+ P++ +D++
Sbjct: 129 SALNDTEFQQRTLKVREAKERPERTEDNN 157
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 139 (54.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 50/170 (29%), Positives = 75/170 (44%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
T C F+ N+ +A E L R+F D G + +RI+ D T +G AY+ F D +
Sbjct: 268 TKRCV-FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
Query: 449 AVAKN-KQMFLGKKLSIARSN---PKQ--RKDSSGERAPTEQAQSHQQTGNAGTSA-SKE 501
A+ N K+M G+ L I R+ PK R E+ T Q ++ + G AG + +E
Sbjct: 327 ALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARKLIGKAGNALLQQE 386
Query: 502 SSIETSKQSRGRGD----SVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGE 547
++E + G V K K A RN + K KT G+
Sbjct: 387 LALEGHRAKPGENPLAKKKVNKKRKERAAQWRNKKAESVGK-KQKTAAGK 435
Score = 54 (24.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 57 SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL 94
S L L+ T ++D+ L+V +V + + TK C +VG L
Sbjct: 241 SALSLNGTMFMDRHLRVDSVSHPM-PQDTKRCVFVGNL 277
Score = 43 (20.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAK 332
+S E ++ E + +K E KSD + PA+
Sbjct: 133 QSVLEERTSQEDVKSEREVAEKLANELEKSDKTVFVNNLPAR 174
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 148 (57.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 44/191 (23%), Positives = 87/191 (45%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQV 352
++ S+S +S D+K + R +R++ S +SP ++ +H + + H E R
Sbjct: 61 KKRSRSHNKSRDRKRSRSRDRDRYRRRN----SRSRSPGRQCRHRSRSWDRRHGSESRSR 116
Query: 353 QNLAEENEGRETKQTV-------EEQP---KKQPIKDAVPGRTKGFTDECTAFLSNINLK 402
+ E+ + + P +K P+++ V + D T F + +
Sbjct: 117 DHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAAR 176
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKL 462
DL FFS VG V +RI+ D+ + +S+G+AYV+F + + + A+ Q LG +
Sbjct: 177 IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI 236
Query: 463 SIARSNPKQRK 473
+ S ++ +
Sbjct: 237 IVQASQAEKNR 247
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 143 (55.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 45/169 (26%), Positives = 74/169 (43%)
Query: 348 EKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFT--DECTAFLSNINLKATY 405
E VQ A E E E ++ + P + I PG K D + ++ N++ +
Sbjct: 97 EPPSVQRKATEEERAEARELLS--P--ETIGCFFPGAPKENVEADHRSVYVGNVDYGGSA 152
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
+L +FS G + + IL DKF+G +G AY++F + AAV ++ F G+ + +
Sbjct: 153 AELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVL 212
Query: 466 RSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRG 514
SS +R S + G S ++ + QSRGRG
Sbjct: 213 PKRTNFPGISSTDRGGLRTHSSSRAAFLQG-SLQRKPRLRPHGQSRGRG 260
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 143 (55.4 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 45/169 (26%), Positives = 74/169 (43%)
Query: 348 EKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFT--DECTAFLSNINLKATY 405
E VQ A E E E ++ + P + I PG K D + ++ N++ +
Sbjct: 112 EPPSVQRKATEEERAEARELLS--P--ETIGCFFPGAPKENVEADHRSVYVGNVDYGGSA 167
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
+L +FS G + + IL DKF+G +G AY++F + AAV ++ F G+ + +
Sbjct: 168 AELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVL 227
Query: 466 RSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRG 514
SS +R S + G S ++ + QSRGRG
Sbjct: 228 PKRTNFPGISSTDRGGLRTHSSSRAAFLQG-SLQRKPRLRPHGQSRGRG 275
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 134 (52.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
+D + ++ N++ AT ++L +F+ G V+ + I +++FTG +G AY++F D E +
Sbjct: 63 SDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRT 122
Query: 449 AVAKNKQMFLGK--KLSIARSN 468
A+A ++ +F G+ K+S R+N
Sbjct: 123 AMALDETLFRGRVIKVSPKRTN 144
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 148 (57.2 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 70/301 (23%), Positives = 129/301 (42%)
Query: 279 KVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDS----NISYEQSPAKRQ 334
KV + E S + + ++E K + SDS + S E++PAK +
Sbjct: 151 KVVKKAESSESESSDSSDSDSDDESSEEEEVPKAKAKAAESSDSEDSDSESEEEAPAKAK 210
Query: 335 KHAP-QKPKKVHDKEKRQVQNLAEENEGRETKQTVE-EQP----KKQPIKDAVPGRTKGF 388
A K + D + + + ++E G ++ + ++P K++ ++ K
Sbjct: 211 GDAKTSKEESDSDSDSSESSSDSDEESGSSGSESEDSDKPADSKKRKAEEEPAAASKKSK 270
Query: 389 TDE---CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEH 445
T+E F+ N++ T E L + F G +S+ RI+ ++ TG+SRG YV+F +
Sbjct: 271 TEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSA-RIMTERDTGRSRGFGYVEFTNAAD 329
Query: 446 LAAAVAKNKQMFL-GKKLSI--ARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKES 502
A A K+ + G+K+++ A P KD G + E+AQ+ ++ TS ++
Sbjct: 330 AAKAYEAMKEHEIDGRKINLDYATGRPAN-KDQGGFK---ERAQNRARSFGDQTSPESDT 385
Query: 503 SIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPA-IKPKTEEGED-LKPKSNDEFRKM 560
+ DSV F NV + P ++ +G ++ S DE RK
Sbjct: 386 LFVGNLPFSANEDSVH----EVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKA 441
Query: 561 F 561
+
Sbjct: 442 Y 442
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 146 (56.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 50/211 (23%), Positives = 94/211 (44%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQV 352
++ S + D+KE S + E++K + + S + + + + D +
Sbjct: 74 KESSSDESDDEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDS--- 130
Query: 353 QNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDE-CTAFLSNINLKATYEDLRRF 411
+ +EE ++ K ++ + P+K + P + T+E T F+ ++ L+R
Sbjct: 131 DSDSEEEPSKKRKAEESKEEESAPVKKSKPAAS---TEEPATLFVGRLSWNIDDAWLKRE 187
Query: 412 FSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQ 471
F +GGV R++ ++ TGKSRG YVDF E +AA ++M GK++ P
Sbjct: 188 FEHIGGVIGARVIMERATGKSRGYGYVDF---ESKSAAEKALEEM-QGKEID---GRPIN 240
Query: 472 RKDSSGERAPTEQAQSHQQTGNAGTSASKES 502
S+G+ P ++ + G S S S
Sbjct: 241 LDMSTGK--PHASKSNNDRAKQYGDSQSPPS 269
Score = 99 (39.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 35/135 (25%), Positives = 57/135 (42%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T F+ N++ A ++L F + G V S R+ T + +G YV F DE AA A
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 452 KNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSR 511
N + G+ + S P+ +++ + G SA+ S T + ++
Sbjct: 331 MNGEYIEGRPCRLDFSTPRDNTNNNNNN--NRRGGFGGGFGGRERSATPRSGNSTPRPNK 388
Query: 512 GRGDSVQLKG-KNTF 525
S + KG K TF
Sbjct: 389 ----STEFKGTKKTF 399
Score = 63 (27.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 16/87 (18%), Positives = 41/87 (47%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKR 350
+ ++ +K + E + +E S + E+ SD + S + S + + + + EK+
Sbjct: 15 KEEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKK 74
Query: 351 QVQNLAEENEGR--ETKQTVEEQPKKQ 375
+ + ++E + E+ +E+ KK+
Sbjct: 75 ESSSDESDDEDKKEESSSGSDEEEKKE 101
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 146 (56.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 50/211 (23%), Positives = 94/211 (44%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQV 352
++ S + D+KE S + E++K + + S + + + + D +
Sbjct: 74 KESSSDESDDEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDS--- 130
Query: 353 QNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDE-CTAFLSNINLKATYEDLRRF 411
+ +EE ++ K ++ + P+K + P + T+E T F+ ++ L+R
Sbjct: 131 DSDSEEEPSKKRKAEESKEEESAPVKKSKPAAS---TEEPATLFVGRLSWNIDDAWLKRE 187
Query: 412 FSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQ 471
F +GGV R++ ++ TGKSRG YVDF E +AA ++M GK++ P
Sbjct: 188 FEHIGGVIGARVIMERATGKSRGYGYVDF---ESKSAAEKALEEM-QGKEID---GRPIN 240
Query: 472 RKDSSGERAPTEQAQSHQQTGNAGTSASKES 502
S+G+ P ++ + G S S S
Sbjct: 241 LDMSTGK--PHASKSNNDRAKQYGDSQSPPS 269
Score = 99 (39.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 35/135 (25%), Positives = 57/135 (42%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T F+ N++ A ++L F + G V S R+ T + +G YV F DE AA A
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 452 KNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSR 511
N + G+ + S P+ +++ + G SA+ S T + ++
Sbjct: 331 MNGEYIEGRPCRLDFSTPRDNTNNNNNN--NRRGGFGGGFGGRERSATPRSGNSTPRPNK 388
Query: 512 GRGDSVQLKG-KNTF 525
S + KG K TF
Sbjct: 389 ----STEFKGTKKTF 399
Score = 63 (27.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 16/87 (18%), Positives = 41/87 (47%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKR 350
+ ++ +K + E + +E S + E+ SD + S + S + + + + EK+
Sbjct: 15 KEEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKK 74
Query: 351 QVQNLAEENEGR--ETKQTVEEQPKKQ 375
+ + ++E + E+ +E+ KK+
Sbjct: 75 ESSSDESDDEDKKEESSSGSDEEEKKE 101
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 138 (53.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 39/140 (27%), Positives = 73/140 (52%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQ--PKKQPIKDAVPGRTKGFTDECTAFLSNINLKATY 405
KR+++ + EE RE + VE++ + P A K D + ++ N++ T
Sbjct: 43 KRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTP 102
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
E+++ F G V+ + IL DKF G+ +G AYV+F++ E + A+ N+ G++L ++
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVS 161
Query: 466 --RSN-PKQRKDSSGERAPT 482
R+N P ++ G P+
Sbjct: 162 PKRTNVPGMKQYHPGRFNPS 181
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 146 (56.5 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 46/171 (26%), Positives = 81/171 (47%)
Query: 352 VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRF 411
VQ AEE EG Q + + P+ P K D + ++ N++ + E+L
Sbjct: 109 VQQQAEEEEGTAAGQLLSPETVGCPLS-GTP-EEKVEADHRSVYVGNVDYGGSAEELEAH 166
Query: 412 FSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQ 471
FS G V + IL DKF+G +G AY++F + AAV ++ +F G+ + + PK
Sbjct: 167 FSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVL---PK- 222
Query: 472 RKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGK 522
R + G + T++ G+ G + S ++ + R +G + + +GK
Sbjct: 223 RTNFPGISS-TDRGGLRGHPGSRG-APFPHSGLQGRPRLRPQGQN-RARGK 270
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 132 (51.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 38/137 (27%), Positives = 71/137 (51%)
Query: 338 PQKPKKVHDKEKRQVQNLAEENEGRETK-QTVEEQPKKQPIKDAV-P-GRTKGFTDECTA 394
P + ++V + +V+N EE E K + + Q + P K TD +
Sbjct: 6 PVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTDEEKRDTDARSI 65
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ N++ +T +L++ FS G V+ + IL +KFTG+ +G AY++F D + + AVA +
Sbjct: 66 YIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLD 125
Query: 454 KQMFLGKKLSIA--RSN 468
F ++L ++ R+N
Sbjct: 126 GSTFRERQLKVSAKRTN 142
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 132 (51.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 38/137 (27%), Positives = 71/137 (51%)
Query: 338 PQKPKKVHDKEKRQVQNLAEENEGRETK-QTVEEQPKKQPIKDAV-P-GRTKGFTDECTA 394
P + ++V + +V+N EE E K + + Q + P K TD +
Sbjct: 6 PVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTDEEKRDTDARSI 65
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ N++ +T +L++ FS G V+ + IL +KFTG+ +G AY++F D + + AVA +
Sbjct: 66 YIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLD 125
Query: 454 KQMFLGKKLSIA--RSN 468
F ++L ++ R+N
Sbjct: 126 GSTFRERQLKVSAKRTN 142
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 142 (55.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 49/172 (28%), Positives = 80/172 (46%)
Query: 348 EKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYED 407
E +VQNL +EG E + + P D+ P K D + ++ N++ T ++
Sbjct: 120 EPPRVQNL---DEGEEAAGALLARQLLSPETDS-P-LEKAEADHRSIYVGNVDYGGTAQE 174
Query: 408 LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA-- 465
L +F+ G + + IL DKF+G +G AY++F + AAV +K +F G+ + +
Sbjct: 175 LEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDKSIFRGRVIKVLPK 234
Query: 466 RSN-PK-QRKDSSGERA-PTEQAQSHQQTGNAGTSASKESSIETSKQSRGRG 514
R+N P D G R P + S G G + + +SRGRG
Sbjct: 235 RTNLPGISSTDRGGLRGHPGARVGSFPYGGLQGGARFRPRG-----RSRGRG 281
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 346 DKEKRQVQNLAEENEGRETK-QTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+KE +++ E E K + ++EQ + +A+ K D + ++ N++ T
Sbjct: 11 EKELLEMKERVAEMEAEAAKLRAMQEQLDNET--EALRN-DKESIDAQSVYVGNVDYSVT 67
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
E+L+ F+ G V+ + IL DKFTG +G AY++F + + A+ N M + L +
Sbjct: 68 PEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKV 127
Query: 465 A--RSN 468
R+N
Sbjct: 128 TPKRTN 133
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 146 (56.5 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 146 (56.5 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 146 (56.5 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 146 (56.5 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 106
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 107 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 165
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 166 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 226 QASQAEKNR 234
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 135 (52.6 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 32/136 (23%), Positives = 65/136 (47%)
Query: 346 DKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATY 405
++E+++++ + E G T + Q + P K D + ++ N++ AT
Sbjct: 35 EEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSL--LTP-EEKAEADAKSVYVGNVDYGATA 91
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
E++ + F G VS + I D+F+G +G AYV+F + E + A+A + G+++ +
Sbjct: 92 EEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKVD 151
Query: 466 RSNPKQRKDSSGERAP 481
+ S+ R P
Sbjct: 152 PKRTNKPGMSTTNRPP 167
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 122 (48.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/77 (31%), Positives = 48/77 (62%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ ++ N+ + T E++ +F+ VG V+++RI++D+ TG+ RG A+V+F ++ AV +
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 453 -NKQMFLGKKLSIARSN 468
N F G+ L + +N
Sbjct: 67 LNGVAFNGRNLRVNYAN 83
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/196 (22%), Positives = 86/196 (43%)
Query: 279 KVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAP 338
K R + + +S++ KS + + +E+R+S S S E+ R AP
Sbjct: 39 KSRSRSRDRKRSKSRERKKSHDRRRSRSRDRKRSRSKERRRSRSR-SRERGGRYR---AP 94
Query: 339 QKPKKVHDKEKRQV-QNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLS 397
K + + + A + R ++ + + P++ + T D T F
Sbjct: 95 FSGLKFNGGPRGKTGPPPAIKLSRRRSRSRSPFKKDRSPVRQPIDNLTPEERDARTVFCM 154
Query: 398 NINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMF 457
+ + DL FFS VG V +RI+ D+ + +S+G+AY++F+D + A+ + Q
Sbjct: 155 QLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRL 214
Query: 458 LGKKLSIARSNPKQRK 473
LG + + S ++ +
Sbjct: 215 LGVPIIVQASQAEKNR 230
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 41/197 (20%), Positives = 83/197 (42%)
Query: 279 KVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAP 338
K R + + RS++ +S + +K R K + S + + +P
Sbjct: 39 KSRSRSHDRKRSRSKERKRSRDRERKKSRSRERKRSRSKERRRSRSRSRDRRFRGRYRSP 98
Query: 339 QKPKKVHDKEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFL 396
K + + ++ L + R ++ + K P+++ + T D T F
Sbjct: 99 YSGPKFNSAIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFC 157
Query: 397 SNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQM 456
+ + DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q
Sbjct: 158 MQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQR 217
Query: 457 FLGKKLSIARSNPKQRK 473
LG + + S ++ +
Sbjct: 218 VLGVPIIVQASQAEKNR 234
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/218 (24%), Positives = 96/218 (44%)
Query: 266 EYGTLEDFDHSVQKVT-PRLEELRLFRSQQESKSLPE--SADQKEHSVKKTGREKRKSDS 322
+ L+ S+ K+ P S Q++ S + +A+ KE S + T EK K +S
Sbjct: 41 QLAALQALSSSLNKLNNPNSNNSSSNNSNQDTSSSKQDGTANDKEGSNEDTKNEK-KQES 99
Query: 323 NISYEQSPAKRQKHAPQK-PKKVHDKEKRQVQNLAEENEGRE-TKQTVEEQPKKQPIKDA 380
S + A P P + + Q Q + ++ ++ QT EE+ K K++
Sbjct: 100 ATSANAN-ANASSAGPSGLPWEQLQQTMSQFQQPSSQSPPQQQVTQTKEERSKADLSKES 158
Query: 381 VPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF 440
C F+ +N T ++LR +F G V+ ++I+ D TG+SRG ++ F
Sbjct: 159 -----------CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207
Query: 441 IDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGE 478
+ V K + + GK + R+ P+ +D +G+
Sbjct: 208 -EKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGK 244
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 42/187 (22%), Positives = 85/187 (45%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKR-----QKHAPQKPKKVHDK 347
++ S+S +S ++K + R +RK+ + S ++ R ++H+ + + +
Sbjct: 76 KKRSRSHSKSRERKRSRSRDRDRHRRKNSRSRSRDRQRRHRSRSWDRRHSSESRSRDWRR 135
Query: 348 EKRQVQNLAEENEGRETKQTVEEQ-PKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYE 406
E R GR + +K P+++ V + D T F + +
Sbjct: 136 EDRVHYRSPPLAAGRRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPR 195
Query: 407 DLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466
DL FFS VG V +RI+ D+ + +S+G+AYV+F + + + A+ Q LG + +
Sbjct: 196 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 255
Query: 467 SNPKQRK 473
S ++ +
Sbjct: 256 SQAEKNR 262
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 43/171 (25%), Positives = 78/171 (45%)
Query: 352 VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRF 411
VQ A E E E +Q + P+ + + D + F+ N++ + +L +
Sbjct: 105 VQRKATEEERAEVRQLLS--PETVDCFFSRTSKENVEADHRSVFVGNVDYGGSAAELEAY 162
Query: 412 FSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQ 471
FS G + + IL DKF+G +G AY++F + AAV ++ F G+ + + PK
Sbjct: 163 FSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVL---PK- 218
Query: 472 RKDSSGERAPTEQAQSHQQTGNAGT----SASKESSIETSKQSRGRGDSVQ 518
R + G + T++ +GN S +++ + +SRG G + Q
Sbjct: 219 RTNFPGISS-TDRGGLRTHSGNRAAFLHGSLHRKARLRAHGRSRGHGGAPQ 268
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 121 (47.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ ++ N + T E+L FFS +G ++++RI+ D+ TG+ RG A+++F ++ AV +
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 453 -NKQMFLGKKLSIARSN 468
N F G+ L + +N
Sbjct: 66 MNGAEFNGRPLRVNLAN 82
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/116 (27%), Positives = 57/116 (49%)
Query: 364 TKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423
+K T E + P + K D+ + ++ N++ T +DL FS G ++ I I
Sbjct: 67 SKMTAGEYTEGPP--RPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITI 124
Query: 424 LHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGER 479
L DKF+G +G AY++F + + AAV ++ +F G+ + + SS +R
Sbjct: 125 LCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDR 180
>UNIPROTKB|D4A5G0 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01622 EMBL:AC118414 IPI:IPI00951290
ProteinModelPortal:D4A5G0 Ensembl:ENSRNOT00000068388
ArrayExpress:D4A5G0 Uniprot:D4A5G0
Length = 440
Score = 146 (56.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 43/189 (22%), Positives = 86/189 (45%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKS-DSNISYEQSPAKRQK---HAPQKPKKVHD 346
R + +SK S D++ K R++ +S + S +S +R + +P K +
Sbjct: 38 RKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNS 97
Query: 347 KEKRQVQNLAEENE--GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKAT 404
+ ++ L + R ++ + K P+++ + T D T F + +
Sbjct: 98 AIRGKI-GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIR 156
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
DL FFS VG V +R++ D+ + +S+G+AYV+F+D + A+ Q LG + +
Sbjct: 157 PRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 216
Query: 465 ARSNPKQRK 473
S ++ +
Sbjct: 217 QASQAEKNR 225
Score = 40 (19.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 474 DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRP 533
+ +G + P Q+ Q +G+ A E S Q+R S Q + + A +V+P
Sbjct: 334 EGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRL---SQQTEA-SALAAAASVQP 389
Query: 534 LGFPAIK------PKTEE--GEDLKPKSN 554
L + P+TEE G D + K +
Sbjct: 390 LATQCFQLSNMFNPQTEEEVGWDTEIKDD 418
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 102 (41.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-LWLDY 63
R E+QI R ++S Q ++ Y +E+S D R + ++ERA+ D + LWL Y
Sbjct: 57 RKEFEDQI-RGAKTNS---QVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKY 112
Query: 64 TQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
++ + V N R+V+ RA K P V + W
Sbjct: 113 AEFEMRNKSV-NHARNVWDRAVKILPRVDQFW 143
Score = 86 (35.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 38/162 (23%), Positives = 75/162 (46%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR-- 242
Y Y H+E+ +G ++ AR ++ER + S +AW +I E+ + I +RSIY+R
Sbjct: 144 YKY-IHMEEILG-NIDGARKIFERWMDWSPDQ-QAWLCFIKFELRYNEIERSRSIYERFV 200
Query: 243 -CYSK--------RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELR-LFRS 292
C+ K +F S+ + A + +ER L+D + + + E L +
Sbjct: 201 LCHPKASSFIRYAKFEMKNSQ-VSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKE 259
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQ 334
+ ++ L + A +H K GR + +++E+ ++
Sbjct: 260 VERARFLYKYA--LDHIPK--GRAEDLYKKFVAFEKQYGNKE 297
Score = 70 (29.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 195 MGKDMVS-ARGVWERLLK-ISGAMLEAWQSYISM-EIE--LDHINEARSIYKRCYSKRFT 249
M VS AR V+ER ++ + EA +++ E E + AR +YK Y+
Sbjct: 217 MKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYK--YALDHI 274
Query: 250 GTG-SEDICHAWLRFEREYGTLEDFDHSV 277
G +ED+ ++ FE++YG E D ++
Sbjct: 275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAI 303
Score = 60 (26.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 30/106 (28%), Positives = 46/106 (43%)
Query: 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KDMVSARGVWE 207
G EG+ D + R Q Y E KN + Y + LE+++G KD + R V+E
Sbjct: 294 GNKEGIDDAIVGRRKLQ----YEGEVRKNPLNYDSWFDYIS-LEETLGDKDRI--REVYE 346
Query: 208 RLLKISGAMLEA--WQSYISM--------EIELDHINEARSIYKRC 243
R + E WQ YI + EI + + R++Y+ C
Sbjct: 347 RAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYREC 392
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 40/181 (22%), Positives = 81/181 (44%)
Query: 293 QQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQV 352
++ S+S +S D+K + R++ + + S ++ ++ + ++ +VH R
Sbjct: 64 KKRSRSHSKSRDRKHSRSRDRDRDRHRRRGSRSXDRRHSESRSRDRRREDRVH---YRSP 120
Query: 353 QNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFF 412
G E K P+++ V + D T F + + DL FF
Sbjct: 121 PLATGRRYGHSKSPHFRE---KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFF 177
Query: 413 SDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQR 472
S VG V +RI+ D+ + +S+G+AYV+F + + + A+ Q LG + + S ++
Sbjct: 178 SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN 237
Query: 473 K 473
+
Sbjct: 238 R 238
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 144 (55.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 52/232 (22%), Positives = 101/232 (43%)
Query: 262 RFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSD 321
R RE G D D ++ R + R RS+ E D+ + + R++R
Sbjct: 109 RHRREGG---DRDRERERERER-DRSRRSRSRDERGGGGRYGDRDKD---RRSRDRRGGS 161
Query: 322 SNISYEQSPAKRQKHAP--QKPKKVHD-KEKRQVQNLAEENEGRE--TKQTVEEQPKKQP 376
++ ++S KR++ Q+ K++ +E+++ + + + R T P
Sbjct: 162 KSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRRRGTNSPRRRSPPNGA 221
Query: 377 IKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLA 436
+ + D T F ++ + DL FFS VG V +R++ T + +G+A
Sbjct: 222 DRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIA 281
Query: 437 YVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSH 488
Y++F D E +A A+ + Q LG + + + ++ + + AP Q +SH
Sbjct: 282 YIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNA--APAFQPKSH 331
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 398 NINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQM 456
NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+ N +
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 457 FLGKKLSIARSNPKQRKD 474
F G+ L + + ++ K+
Sbjct: 63 FSGRALRVDNAASEKNKE 80
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 138 (53.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 48/141 (34%), Positives = 70/141 (49%)
Query: 374 KQPIKD-AVP--GRTKG-------FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423
K P+K+ A P GRT G D F+ N+ +T EDL+R FS G +S +
Sbjct: 377 KGPLKNSAKPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHY 436
Query: 424 LHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRKDSSGERAPT 482
D T K +G A+V FI EH A A+ + Q+F G+ L + S K K++S E T
Sbjct: 437 PIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIK--KEAS-EDTDT 493
Query: 483 EQAQSHQQTGNAGTSASKESS 503
Q S+++ + A+ SS
Sbjct: 494 -QGSSYKKKKESKDKANSSSS 513
Score = 55 (24.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 328 QSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKK 374
++P+K + P +PKK DK K+ L + E E ++ + K+
Sbjct: 100 KNPSKDKDFVPTEPKK-DDKTKKVASELEKLKEDTEFQEFLSAHQKR 145
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ ++ N + T +DL +FS G VS++RI+ D+ TG+ RG A+V+F ++ AV +
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 453 -NKQMFLGKKLSI 464
N F G+ L +
Sbjct: 65 FNGVDFNGRALRV 77
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 117 (46.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ ++ N + T +DL +FS G VS++RI+ D+ TG+ RG A+V+F ++ AV +
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 453 -NKQMFLGKKLSI 464
N F G+ L +
Sbjct: 65 FNGVDFNGRALRV 77
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D + ++ N++ K+T++ + +F G V+ I IL DK TG +G YV+F++ E + A
Sbjct: 99 DSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINA 158
Query: 450 VAKNKQMFLGKKLSIA--RSN 468
+A N F ++L I R+N
Sbjct: 159 MALNDSFFNERQLKITPKRTN 179
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 149 (57.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 49/172 (28%), Positives = 82/172 (47%)
Query: 302 SADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEG 361
++D+KE+ ++ + K S++ + +Q+ K + +EK E+NE
Sbjct: 263 NSDEKENEKRRNLAQDEKV-SDLDWF-----KQRRVRIKESEAETREKSS-SYATEQNES 315
Query: 362 RETKQTVEEQPKKQ-PIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSS 420
+TK+ EEQP++ P K + FL NI + ED R+ FS G +
Sbjct: 316 LDTKK--EEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEE 373
Query: 421 IRILHDKFTGKSRGLAYVDFIDDEHLAAA-VAKNKQMFLGKKLSIARSNPKQ 471
+ + D TG+S+G AYV F D ++ A V +KQ+F G+ L I K+
Sbjct: 374 VHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKK 425
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 245 SKRFTGTG---SEDICHAWLRFEREYGTLEDFDHSVQK--VTPRLEELRLFRSQQESKSL 299
S+RF G ED A F + + S+ K PR+ + ++ ++L
Sbjct: 56 SRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPM---KEKRREAL 112
Query: 300 PESADQKEHSVKKTGREKRKSDSN 323
+++E +++ R+K+K D N
Sbjct: 113 KRFREKEEKLLQEENRKKKKVDEN 136
>DICTYBASE|DDB_G0289941 [details] [associations]
symbol:DDB_G0289941 "Nucleolar protein 12"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0289941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000149 eggNOG:COG0724
KO:K14837 RefSeq:XP_635997.1 ProteinModelPortal:Q54GS2
EnsemblProtists:DDB0188659 GeneID:8627412 KEGG:ddi:DDB_G0289941
InParanoid:Q54GS2 OMA:REIRIFP ProtClustDB:CLSZ2731818
Uniprot:Q54GS2
Length = 481
Score = 117 (46.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDV-GGVSSIRILHDKFTGKSRGLAYVDFIDD 443
TK +D T F+ NI + E+L F G V S+RI+ D T +G YV+F D
Sbjct: 356 TKA-SDAKTIFIGNIPYETEEEELFLIFDKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTD 414
Query: 444 EHLAAAVAKNKQMFLGKKLSI--ARSNPKQRK 473
E + A+A+ F +++ I + NPK+ K
Sbjct: 415 ETASTAIAQKSIQFGKREIRIFPTKENPKKGK 446
Score = 67 (28.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 22/98 (22%), Positives = 39/98 (39%)
Query: 282 PRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKP 341
P++E+ ++ E+K E ++ +T + K + +N K+Q P
Sbjct: 29 PKVEKTVTTKATPENKKQIEKPTTTDNKKSQTEKPKTTTTTNTIKTTPENKKQTEKPTTA 88
Query: 342 KKVHDKEKRQVQNLAEEN----EGRETKQTVEEQPKKQ 375
+ +K N EN E + KQ + Q KKQ
Sbjct: 89 TTTTNTDKTNKNNKTSENTKTTENTKPKQQQQPQAKKQ 126
Score = 61 (26.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/98 (19%), Positives = 38/98 (38%)
Query: 295 ESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDK-EKRQVQ 353
E+ E+ K+ + ++K + S + + ++ PQKP + D +K +
Sbjct: 105 ENTKTTENTKPKQQQQPQAKKQKSEPTSTPTTTTTTTTKETTQPQKPFSIFDSLKKSEST 164
Query: 354 NLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDE 391
N +EN + T K+ K K F+ +
Sbjct: 165 NTKQENNEKTTTTASAATTIKKTEKSNKTSLLKAFSSD 202
Score = 46 (21.3 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 20/96 (20%), Positives = 41/96 (42%)
Query: 279 KVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAP 338
K T ++ ++ P +A ++ KT + + S++ + E + K+Q
Sbjct: 64 KTTTTTNTIKTTPENKKQTEKPTTATTTTNT-DKTNKNNKTSENTKTTENTKPKQQ---- 118
Query: 339 QKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKK 374
Q+P+ K+K + + TK+T QP+K
Sbjct: 119 QQPQA--KKQKSEPTSTPTTTTTTTTKETT--QPQK 150
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 134 (52.2 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 46/145 (31%), Positives = 66/145 (45%)
Query: 377 IKDAVPGRTKGFTDE-----CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK 431
IK + PG E + ++ NI ++T L F D+ G+ +RI D+ TG
Sbjct: 149 IKASKPGNRDAMNQEERTPTSSLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGW 208
Query: 432 SRGLAYVDFIDDEHLAAAVAKNKQM-FLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQ 490
RG A+ DF D E AV K K M +G+ L + S P R P + Q
Sbjct: 209 PRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYSTP---------RVPRNE---RMQ 256
Query: 491 TGNAGTSASKESSIETSKQSRGRGD 515
T + G+ S++S S+ SRG GD
Sbjct: 257 TAS-GSRDSRDS--RDSRDSRGSGD 278
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 137 (53.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 28/100 (28%), Positives = 51/100 (51%)
Query: 374 KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
K P+++ + T D T F + + DL FFS VG V +R++ D+ + +S+
Sbjct: 8 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 67
Query: 434 GLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRK 473
G+AYV+F+D + A+ Q LG + + S ++ +
Sbjct: 68 GIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR 107
Score = 40 (19.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 474 DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRP 533
+ +G + P Q+ Q +G+ A E S Q+R S Q + + A +V+P
Sbjct: 216 EGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRL---SQQTEA-SALAAAASVQP 271
Query: 534 LGFPAIK------PKTEE--GEDLKPKSN 554
L + P+TEE G D + K +
Sbjct: 272 LATQCFQLSNMFNPQTEEEVGWDTEIKDD 300
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 140 (54.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 53/218 (24%), Positives = 98/218 (44%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQ--KHAPQKPKKVHDKEK 349
S++ES S E K+ +V K + K DS+ S E S + + P K KV K
Sbjct: 268 SEEESSSDDEPTPAKKPTVVKNAKPAAK-DSSSSEEDSDEEESDDEKPPTKKAKVSSKTS 326
Query: 350 RQVQNLAEENEGRETKQTVEEQ--PKKQP----IKDA----------VP-GRTKGFTDEC 392
+Q + E ++ + +++ +E+ PKK+ + DA P +T+G +
Sbjct: 327 KQESSSDESSDESDKEESKDEKVTPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSK-- 384
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRGLAYVDFIDDEHLAAAVA 451
T F N++ + D+ FF + G V +R+ F G +G +++F E A+
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRL--SSFDDGSFKGYGHIEFASPEEAQKALE 442
Query: 452 KNKQMFLGK--KLSIARSNPKQRKDSSGERAPTEQAQS 487
N ++ LG+ +L +A R + G + Q+++
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRT 480
Score = 97 (39.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 34/139 (24%), Positives = 63/139 (45%)
Query: 361 GRETKQTVEEQPKKQPIKDAVPGR----TKGFTDECTAFLSNINLKATYEDLRRFFSDVG 416
GR+ + + + + P +++ PGR ++ T F S++ ++LR FS G
Sbjct: 450 GRDVRLDLANE-RGTP-RNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCG 507
Query: 417 GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDS- 475
V+ + + D+ TG SRG AY+D A ++ ++ G + + S P+ +
Sbjct: 508 EVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSE--IGGGNIHVEESRPRDSDEGR 565
Query: 476 SGERAPTEQAQSHQQTGNA 494
S RAP A + + A
Sbjct: 566 SSNRAPARGAPRGRHSDRA 584
Score = 71 (30.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 26/114 (22%), Positives = 53/114 (46%)
Query: 271 EDFDHSVQKVTPRLEELRLFRSQQESKSLP--------ESADQKEHSVKKTGREKRKSDS 322
ED D V K + E + + + ++ K++P +++D E K K K +S
Sbjct: 31 EDLDMQVTKKQKK-ELIDVVQKEKAEKTVPKKVESSSSDASDSDEEEKTKETPSKLKDES 89
Query: 323 NISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP 376
+ E + ++ AP K K+ +K +V++ + +++ ++T KKQP
Sbjct: 90 SSEEEDDSSSDEEIAPAK-KRPEPIKKAKVESSSSDDDSTSDEETAPV--KKQP 140
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 133 (51.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 372 PKKQP---IKDAVPGRTKG--FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426
PK QP K + PG G + T ++SN++ T D+ FS G V+ + +L D
Sbjct: 32 PKHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKD 91
Query: 427 KFTGKSRGLAYVDFIDDEHLA-AAVAKNKQMFLGKKL--SIARSN 468
+ T +SRG+A+V ++ E A AA + + ++ G+KL SIA N
Sbjct: 92 RHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIAADN 136
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 115 (45.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 30/137 (21%), Positives = 60/137 (43%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
++E F+ +N + L FS G +S + ++ D+ T +SRG ++ F + EH +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62
Query: 449 AV-AKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTG-NAGTSASKESSIET 506
A+ A N + G+++ + + R G + +S+ + G + G + +
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRP 122
Query: 507 SKQSRGRGDSVQLKGKN 523
G G S G+N
Sbjct: 123 GGYGYGYGRSRDYNGRN 139
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 140 (54.3 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 52/269 (19%), Positives = 110/269 (40%)
Query: 262 RFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQ-KEHSVKKTGREKRKS 320
R++REYG S + + R ++S+ + +D+ + +S + + R S
Sbjct: 130 RYDREYGGGSGRRDSGRDYRDNRDSSS--RDSRDSRDSRDRSDRDRRYSSESSSSRDRHS 187
Query: 321 DSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEE-QPKKQPIKD 379
+SN + S + + +K K + + + + N + + P
Sbjct: 188 ESNGNINGSSGGSNRDSKEKQKDLQNSPTTSTSSTSSSNTTTNKESSSSSISTSTPPTSS 247
Query: 380 AVPGRTKGF------TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
+ + +D+ T F+S ++ +DL FS G V ++R++ DK T + +
Sbjct: 248 STTSSSSTLPEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMK 307
Query: 434 GLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGN 493
G+ YV+F E + A+A + + G+++ + P+++ S + +S G
Sbjct: 308 GVGYVEFSQKEMVDKAIALSGSVLDGQQILVHSIQPEKKVIKSNSTG-SSGGESRIYVGY 366
Query: 494 AGTSASKESSIETSKQSRGRGDSVQLKGK 522
S ++E I Q G D + + K
Sbjct: 367 IHLSVAEEQ-IRVIFQPYGDIDFINIHTK 394
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 120 (47.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
TD + ++ N++ K+T ++ F+ G V+ + I DKFTG + A+V+F E +
Sbjct: 43 TDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQL 102
Query: 449 AVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKE 501
A+ + MF +K+ + + K G R T Q +H + G S +
Sbjct: 103 ALVLSGTMFRNRKIMVTLK--RTNKPGMG-RTATAQKPAHFAKSSHGKPGSHQ 152
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 197 KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240
+D V+A + LLK + L A + Y++ E +ARS+Y
Sbjct: 11 EDFVTAEEM--ELLKQA---LSASKKYMAPTAEEQEKTDARSVY 49
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 132 (51.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 45/160 (28%), Positives = 78/160 (48%)
Query: 398 NINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKNKQM 456
NI L E+LR F G V + I D ++G+ RG A+V+F+D A + N++
Sbjct: 53 NIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRS 112
Query: 457 FLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTS--ASKESSIETSKQSRGRG 514
F G+++++ ++ + RK R T + +S + +G+ S S+ SI S+ R
Sbjct: 113 FAGREITVVVAS-ESRKRPEEMRVKT-RTRSREPSGSRDRSHGRSRSRSISRSRSPRRPS 170
Query: 515 DS-VQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKS 553
DS + + ++ PR G P P+ EE E+ +S
Sbjct: 171 DSRSRYRSRSYSPAPRR---RGGP---PRGEEDENYSRRS 204
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 138 (53.6 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 44/208 (21%), Positives = 87/208 (41%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQ 351
S+ E + ++A + + SD S ++ PA+++ K D+
Sbjct: 195 SEDEKPATKKAAPAAAKAASSSDSSDEDSDEE-SEDEKPAQKKADTKASKKSSSDESSES 253
Query: 352 VQNLAEENEGRETKQTVEEQ---PKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDL 408
++ +E+ E K++ + + +K K T T F +N++ D+
Sbjct: 254 EEDESEDEEETPKKKSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADV 313
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468
FF + G V +R ++ G RG +V+F E A+ + + LG+++ R +
Sbjct: 314 ENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREI---RLD 370
Query: 469 PKQRKDSSGER-APTEQAQSHQQTGNAG 495
Q + GER A T Q+ + + G+ G
Sbjct: 371 IAQERGERGERPAFTPQSGNFRSGGDGG 398
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 103 (41.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 37/138 (26%), Positives = 69/138 (50%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
T ++ N++ T + + FS +G + +++ D T + +V+F + H AAA+A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 453 -NKQMFLGKKLSI--ARSNPKQRKDSSGERA-PTEQAQSHQQT--GNAGTSASKESSIET 506
N + +GK++ + A + Q+KD+S T+++Q H G+ + E I+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED-IKA 124
Query: 507 SKQSRGRGDSVQLK-GKN 523
+ GR SV LK G+N
Sbjct: 125 AFAPFGR-ISVSLKNGQN 141
Score = 43 (20.2 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 67 LDKTLKVGNVVRDV 80
+ KTL VGN+ RDV
Sbjct: 5 MPKTLYVGNLSRDV 18
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 135 (52.6 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 40/177 (22%), Positives = 82/177 (46%)
Query: 302 SADQKEH---SVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEE 358
S D+ H S + R++++ + S+++ + + + ++ D+ + + LA
Sbjct: 63 SRDRDRHRRRSSRSRSRDRQRRHRSRSWDR---RHSSESRSRDRRREDRVRYRSPPLATG 119
Query: 359 NEGRETKQTV--EEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVG 416
+K E+ P ++PI + P D T F + + DL FFS VG
Sbjct: 120 RRYAHSKSPHFREKSPVREPIDNLSPEER----DARTVFCMQLAARIRPRDLEDFFSAVG 175
Query: 417 GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRK 473
V +RI+ D+ + +S+G+AYV+F + + + A+ Q LG + + S ++ +
Sbjct: 176 KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 232
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 112 (44.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/79 (27%), Positives = 48/79 (60%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ +++ +AT +DLRR FS G V+S+ I+ D TG+S+G YV + +E A+ +
Sbjct: 6 YVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLD 65
Query: 454 KQMFLGKKLSIARSNPKQR 472
+ + ++++ + P+++
Sbjct: 66 GALLRNRVITVSVARPQKQ 84
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 112 (44.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/79 (27%), Positives = 48/79 (60%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ +++ +AT +DLRR FS G V+S+ I+ D TG+S+G YV + +E A+ +
Sbjct: 6 YVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLD 65
Query: 454 KQMFLGKKLSIARSNPKQR 472
+ + ++++ + P+++
Sbjct: 66 GALLRNRVITVSVARPQKQ 84
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 57/228 (25%), Positives = 95/228 (41%)
Query: 282 PRLEELRLFRSQQESKS-LPESADQKEHSVKKT-GREKRKSDSNISYEQSPAKRQKHAPQ 339
P++E RS S S + +D + S K+ R +R S+ S +S + R+K
Sbjct: 28 PKMES----RSGSPSPSRASKRSDSRSRSRSKSRSRSRRHSNRRYSRSRSHSHRKK---S 80
Query: 340 KPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAV-PGRTKGFTDECTAF-LS 397
+ + + +R+ A N R KD+ G + D T +
Sbjct: 81 RSRSYSPESRRRRSRSASPNSNRRKHAGSRSSYSHDSKKDSHNQGDARANPDPNTCLGVF 140
Query: 398 NINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQ 455
++L T DLR FS G ++ + +++D+ TG+SRG A+V F IDD A A +
Sbjct: 141 GLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGME 200
Query: 456 MFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESS 503
+ G+++ + S K+ PT + T N G SS
Sbjct: 201 LD-GRRIRVDYSITKR------PHTPTPGIYMGRPTHNGGGGGGGGSS 241
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 48/194 (24%), Positives = 89/194 (45%)
Query: 301 ESADQKEHSVKKTGREKRKSDSNIS-YEQSPAKRQKHAPQKPKKVH---DKEKRQVQNLA 356
++A +K + + + SDS+ S + PAK +K K ++ D + + +
Sbjct: 138 KAAAKKVEKSESSDSDSDSSDSDESDSDAKPAKAEKTDKAKKEETDSDSDSDSDSDSSGS 197
Query: 357 EENEGRETKQTVEEQPKKQ---PIKDAVPGRTKGFTDEC----TAFLSNINLKATYEDLR 409
+ ++ E K E P K+ ++ P + K T+E T F+ N++ L
Sbjct: 198 DSSDDEEEKPAKTEAPSKKRKAEEEEEAPAK-KTKTEESDKPSTLFVGNLSWNVDDAMLA 256
Query: 410 RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL-GKKLSIARSN 468
F G V+S R++ D+ +G+S+G YVDF E A + + F+ G+++ + S
Sbjct: 257 EEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFST 316
Query: 469 PK--QRKDSSGERA 480
K D++G RA
Sbjct: 317 GKATNSNDAAGARA 330
Score = 110 (43.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 34/124 (27%), Positives = 55/124 (44%)
Query: 360 EGRETKQTVEEQPKKQPIKDAVPGRTKGFTDEC-----TAFLSNINLKATYEDLRRFFSD 414
+GRE K K DA R K + D T F+ N+ A + + FFS+
Sbjct: 306 DGREIKVDFSTG-KATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSE 364
Query: 415 VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRK 473
V V S+R+ ++ +G+ +G YV F E +A + N Q G+ + S P+ +
Sbjct: 365 VAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPRPPR 424
Query: 474 DSSG 477
+ G
Sbjct: 425 EDGG 428
Score = 70 (29.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 283 RLEELRLFRSQQESKSLPES-ADQKEHSVKKTGREKRK-----SDSNISYEQSPAKRQKH 336
++E+ S +S ES +D K +KT + K++ SDS+ + S +
Sbjct: 143 KVEKSESSDSDSDSSDSDESDSDAKPAKAEKTDKAKKEETDSDSDSDSDSDSSGSDSSDD 202
Query: 337 APQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP 372
+KP K K++ EE ++TK ++P
Sbjct: 203 EEEKPAKTEAPSKKRKAEEEEEAPAKKTKTEESDKP 238
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 35/157 (22%), Positives = 61/157 (38%)
Query: 362 RETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSI 421
R T E + ++ D P + + F+ + F+ N+ L + F G V +
Sbjct: 61 RNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMV 120
Query: 422 RILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRKDSSGERA 480
+++DK TG+SRG +V + AA + N G+ L + P +++ R
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRG 180
Query: 481 PTEQAQSHQQT--GNAGTSASKESSIETSKQSRGRGD 515
P S G G+ A + + S G D
Sbjct: 181 PRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDD 217
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 81 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 113
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/144 (29%), Positives = 68/144 (47%)
Query: 361 GRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSS 420
GR K+ EQ ++ K+ + K ++ N+N+ T E+LR+ FS G ++S
Sbjct: 274 GRAQKKAEREQLLREQFKEKHEEQ-KMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITS 332
Query: 421 IRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRKDSS--- 476
+++ D+ GKS+G +V F E AV + QMF GK L +A + K+ +
Sbjct: 333 TKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQV 391
Query: 477 --GERAPTEQAQSHQQTGNAGTSA 498
G R ++ S N GT A
Sbjct: 392 QFGNRVEARKSSSSASV-NPGTYA 414
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 135 (52.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 40/148 (27%), Positives = 73/148 (49%)
Query: 358 ENEGRETKQT-VEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVG 416
EN +ET ++QP ++ +D + ++ F+ N+ +T EDL + FS G
Sbjct: 45 ENAPKETVTAKTDDQPWQRMKRD--DEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYG 102
Query: 417 GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRKDS 475
+S I D+ T K +G A++ ++ EH A A+ + Q+F G+ + + S K+ K
Sbjct: 103 PLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKKLKI- 161
Query: 476 SGERAPTEQAQSHQQTGNAGTSASKESS 503
E E++ S+++ A A+ SS
Sbjct: 162 --EDIDAEESSSYKKQKEAKDKANSASS 187
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 126 (49.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+ +N +AT E +R +F + G + +I + D T K RG ++ F ++E + + K
Sbjct: 151 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKF 210
Query: 455 QMFLGKKLSIARSNPKQ--RKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRG 512
G K I + PK+ ++ G + + ++ +G G S + S+ Q RG
Sbjct: 211 HTISGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGSGGQGSTNYGKSQRRG 270
Score = 43 (20.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/120 (21%), Positives = 53/120 (44%)
Query: 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR-FEREYGTLEDFDHSVQKVTPRLEEL 287
E D IN +++ + K F G S D L+ + ++G + D + T R +
Sbjct: 50 EGDQINASKN--EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGF 107
Query: 288 RLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDK 347
F +++ S+ + DQKEH + + +K+ ++ ++ P K+ P+ +K
Sbjct: 108 G-FILFKDAASVEKVLDQKEHRLDGRVIDPKKA---MAMKKDPVKKIFVGGLNPEATEEK 163
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDD-EHLAAAVAKN 453
F+ ++ + L+ FS G V+ +RI +DK +G+SRG +VDF ++ + L+A A +
Sbjct: 44 FIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMD 103
Query: 454 KQMFLGKKLSIA 465
+ LG+ L I+
Sbjct: 104 GKGLLGRPLRIS 115
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 136 (52.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ NIN + T ++ R F G V+S + D+ TGKSRG +V+F E + AV + N
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 454 KQMFLGKKLSIARSNPKQRKDS----SGERAPTEQAQSHQ 489
++ F G+ L + R+ K ++ S E A E+A +Q
Sbjct: 305 EKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQ 344
Score = 46 (21.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 540 KPKTEEGEDLKPKS 553
KP+ +EGED K KS
Sbjct: 414 KPEEKEGEDSKSKS 427
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 95 (38.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ ++ AR
Sbjct: 229 LPRVNQFWYKYTYMEEMLG-NIAGARQVFERWMEWRPEE-QAWHSYINFELRYKEVDRAR 286
Query: 238 SIYKRCYSKRFTGTGSEDICHAWL---RFEREYGTLEDFDHSVQKVTPRLEE 286
+IY+R Y D+ + W+ RFE ++G F H+ +KV R E
Sbjct: 287 TIYER-YIHSLVLV-HPDVKN-WIKYARFEEKHGY---FAHA-RKVYERAVE 331
Score = 89 (36.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 171 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 228
Query: 88 CPWVGELW 95
P V + W
Sbjct: 229 LPRVNQFW 236
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|G3V546 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V546 SMR:G3V546 Ensembl:ENST00000557403
ArrayExpress:G3V546 Bgee:G3V546 Uniprot:G3V546
Length = 115
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 407 DLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466
DL FFS VG V +RI+ D+ + +S+G+AYV+F + + + A+ Q LG + +
Sbjct: 11 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 70
Query: 467 SNPKQRK 473
S ++ +
Sbjct: 71 SQAEKNR 77
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 43 FISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 101
Query: 455 QMFLGKKL-SIARSNPKQRK 473
M + + + +A SNP QRK
Sbjct: 102 GMTIKENIIKVAISNPPQRK 121
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHL--AAAV 450
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 451 AKNKQMFL 458
NKQ+ L
Sbjct: 71 INNKQVSL 78
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 42/173 (24%), Positives = 74/173 (42%)
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRR 410
Q Q EE+ G + K+ P K D + ++ N++ + T +L
Sbjct: 122 QPQQQEEEDAGALLAGQLLSPEKEAGFPSDTPTE-KVEADHRSVYVGNVDYEGTARELEA 180
Query: 411 FFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPK 470
+F+ G + + IL DKF+G +G AY++F + AAV + +F G+ + + PK
Sbjct: 181 YFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDNSVFRGRVIKVL---PK 237
Query: 471 QRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKN 523
R + G S + G G +++ S R RG + +G+N
Sbjct: 238 -RTNFPG-------ISSTDRGGLRGHPSARGRPFPHSSLERERGPRFRPRGRN 282
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 133 (51.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 133 (51.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHL--AAAV 450
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D E +
Sbjct: 11 TVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSRA 70
Query: 451 AKNKQMFLGK--KLSIARSN 468
NKQ+F G+ K SIA N
Sbjct: 71 LNNKQLF-GRVIKASIAIDN 89
>POMBASE|SPBC18H10.04c [details] [associations]
symbol:sce3 "translation initiation factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003723
"RNA binding" evidence=ISM] [GO:0003743 "translation initiation
factor activity" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005840 "ribosome" evidence=ISO] [GO:0006413 "translational
initiation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC18H10.04c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0005840 GO:GO:0003743
eggNOG:COG0724 GO:GO:0002183 KO:K03258 EMBL:AJ000318 PIR:T45516
RefSeq:NP_595728.1 ProteinModelPortal:O14369 STRING:O14369
PRIDE:O14369 EnsemblFungi:SPBC18H10.04c.1 GeneID:2540528
KEGG:spo:SPBC18H10.04c OMA:ENHRDFS OrthoDB:EOG40KC7K
NextBio:20801655 Uniprot:O14369
Length = 388
Score = 130 (50.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 49/179 (27%), Positives = 84/179 (46%)
Query: 378 KDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAY 437
+DA+P ++ TA + N++ T DL FF + GV+SIR++ D T +SRG Y
Sbjct: 83 RDAIPIPSE---PPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGY 137
Query: 438 VDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTS 497
V+F + L+AA+A + + +G+ + I + P+ R + ER+ + + G +
Sbjct: 138 VEFETADTLSAALALSGEDLMGRPVRITVAEPR-RSFAREERSTGDWVRR----GPLPPA 192
Query: 498 ASKESSIETSKQSRGR-GDSVQLKGKNTFAVPRN-VRPLGFPAIKPKTEEGEDLKPKSN 554
ES + + GR D + PR VR P + +LKP+S+
Sbjct: 193 EPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLPPRESSERPRLNLKPRSS 251
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D D L A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 452 -KNKQMFLGK--KLSIARSN 468
NKQ+F G+ K SIA N
Sbjct: 71 INNKQLF-GRVIKASIAIDN 89
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D D L A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 452 -KNKQMFLGK--KLSIARSN 468
NKQ+F G+ K SIA N
Sbjct: 71 INNKQLF-GRVIKASIAIDN 89
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D D L A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 452 -KNKQMFLGK--KLSIARSN 468
NKQ+F G+ K SIA N
Sbjct: 71 INNKQLF-GRVIKASIAIDN 89
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 133 (51.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 133 (51.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 133 (51.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>POMBASE|SPBC365.04c [details] [associations]
symbol:SPBC365.04c "RNA-binding protein, involved in
ribosome biogenesis (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISS;IDA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC365.04c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000001011 KO:K14789 OMA:GPRFILF OrthoDB:EOG4JHGRC
PIR:T40311 RefSeq:NP_596033.1 ProteinModelPortal:Q9Y7Y3
STRING:Q9Y7Y3 PRIDE:Q9Y7Y3 EnsemblFungi:SPBC365.04c.1
GeneID:2540924 KEGG:spo:SPBC365.04c NextBio:20802039 Uniprot:Q9Y7Y3
Length = 233
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 43/157 (27%), Positives = 78/157 (49%)
Query: 315 REKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQV---QNLAEENEGRETKQTVEEQ 371
R K+ + S E+ K Q+ + KK DK R + LA+ N+ + K +V
Sbjct: 16 RSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSND--KDKHSVSNP 73
Query: 372 PKKQPIKDAVPGRTKGFTDE--CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT 429
P K +K R KG ++ F+ N+ ++ E L+ F G V S+RI DK +
Sbjct: 74 PHKT-LKSK---RQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTS 129
Query: 430 GKSRGLAYVDFIDDEH--LAAAVAKNKQMFLGKKLSI 464
G+ +G A+V+FI+ + ++ A+ + ++ +K++I
Sbjct: 130 GRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 120 (47.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + ++ N++ T E+L F+ G ++ + IL DKF+G +G AY++F + AA
Sbjct: 50 DQRSIYVGNVDYGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSSVKAA 109
Query: 450 VAKNKQMFLGKKLSIARSNPKQRKDSSGER 479
V ++ +F G+ + + SS +R
Sbjct: 110 VELDESIFRGRVIKVLPKRTNMPGISSTDR 139
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 130 (50.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 52/217 (23%), Positives = 95/217 (43%)
Query: 315 REKRKSDSNISYEQSPAKRQKHAPQKPKKVHD--KEKRQVQNLAEENEGRETKQTVEEQP 372
R ++ +S + + KR+ H QK + KE+R + N G + +
Sbjct: 215 RSVMPAEGTLSKKLAAIKRKFHPDQKSINAYVVFKEERAAAKALQRN-GAQIAEGFR--- 270
Query: 373 KKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
I+ + T D+ + F+ N+ + L F D G + ++RI+ + TG
Sbjct: 271 ----IRVDLASETAS-RDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVG 325
Query: 433 RGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQR--KDSSGERAPTEQAQSHQQ 490
RG YV F + + + A+ N +G+KL + RS K++ + +S + ++S Q+
Sbjct: 326 RGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQR 385
Query: 491 ---TGNAGTSASKESSI-ETS---KQSRGRGDSVQLK 520
T G S SK + I E + K+ +G+ Q K
Sbjct: 386 LNFTSKEGKSHSKNAFIGEKAVLMKKKKGQKKKGQTK 422
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 130 (50.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 56/217 (25%), Positives = 98/217 (45%)
Query: 272 DFDHSV----QKVTPRLEELRLFRSQQESK-SLPESADQKEHSVKKTGREKRKSDSNISY 326
D DH V +K+ EE +L + +LP + ++K+ +K RE + DS
Sbjct: 160 DVDHIVLNQRKKIEINQEEEKLKNERTVFVGNLPVTCNKKK--LKSFFREYGQIDSVRFR 217
Query: 327 EQSPAK---RQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP---IKDA 380
PA+ +K A K +K+H +K + ++E TK + I+
Sbjct: 218 SLIPAEGTLSKKLAAIK-RKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVD 276
Query: 381 VPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF 440
+ T D+ + F+ N+ K + F D G + ++RI+ D+ TG RG YV F
Sbjct: 277 LASETSS-RDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLF 335
Query: 441 IDDEHLAAAVAKNKQMFLGKKLSIARS-NPKQRKDSS 476
+ + + A+ N +G+KL + RS N ++ K +S
Sbjct: 336 ENTDAVHLALKLNNSELMGRKLRVMRSVNKEKLKPNS 372
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 92 (37.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 45/171 (26%), Positives = 73/171 (42%)
Query: 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195
T I + LF G +E L+ L RE F R + ++ + +A LE +
Sbjct: 454 TSIGKCPKNKLFKGYIE--LELQL-RE-FDRCRKLYEKFLEFAPENCTSWIKFAELETIL 509
Query: 196 GKDMVSARGVWERLLKISGAMLEA----WQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
G D+ AR ++E L IS L+ W+SYI EIE + + R++Y+R + T
Sbjct: 510 G-DIDRARAIYE--LAISQPRLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQR----T 562
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPES 302
+ ++ +FE G E Q + +R ++E L ES
Sbjct: 563 QHVKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEEKEERVMLLES 613
Score = 89 (36.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 103 YAQWEESLKEIQRARSIYERALDVDYR-NVTLWLKYAEMEMKNRQV-NHARNIWDRAITT 160
Query: 88 CPWVGELW 95
P V + W
Sbjct: 161 LPRVNQFW 168
Score = 82 (33.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ +R V+ER ++ +AW SYI+ E+ ++ AR
Sbjct: 161 LPRVNQFWYKYTYMEEMLG-NVAGSRQVFERWMEWQPEE-QAWHSYINFELRYKEVDRAR 218
Query: 238 SIY 240
+IY
Sbjct: 219 TIY 221
Score = 78 (32.5 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 10 EQISRQDLSDSEKFQQYMIY-LKYEQSSG--D--PGRVQLLYERAITDFPVSSDLWLDYT 64
++I +QD + F+ Y I+ K+ G D + + YE + P + D W DY
Sbjct: 297 DRIPKQDAQNL--FKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 354
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGE 93
+ ++ VR+VY RA N P + E
Sbjct: 355 RLVESDADA-ETVREVYERAIANVPPIQE 382
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 39/148 (26%), Positives = 64/148 (43%)
Query: 324 ISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN-EGRETKQTVEEQP-KKQPIKDAV 381
+ Y++ + ++ K V D V+ L EGRE K + E+P P +
Sbjct: 107 VMYDKYSGRSRRFGFATMKSVEDANA-VVEKLNGNTVEGREIKVNITEKPIASSPDLSVL 165
Query: 382 PGRTKGFTDE-CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF 440
F D ++ N+ T E L FS+ G V S ++ T KS G +V F
Sbjct: 166 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 225
Query: 441 IDDEHLAAA-VAKNKQMFLGKKLSIARS 467
+E + AA VA N + G+K+ + ++
Sbjct: 226 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 94 (38.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 45/188 (23%), Positives = 88/188 (46%)
Query: 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241
++ + ++++E+ + +++ AR ++ER ++ +AWQ+YI+ E+ I+ ARS+Y+
Sbjct: 154 MQFWLKYSYMEEVI-ENIPGARQIFERWIEWEPPE-QAWQTYINFELRYKEIDRARSVYQ 211
Query: 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPE 301
R G ++ + +FE G + + + +K E + + + +L E
Sbjct: 212 RFLHVH--GINVQNWIK-YAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFE 268
Query: 302 SADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKK------VHD----KEKRQ 351
QKEH + G K D N+ ++ + KH Q KK + D K K Q
Sbjct: 269 ER-QKEHE-RARGIFKYGLD-NLPSNRTE-EIFKHYTQHEKKFGERVGIEDVIISKRKTQ 324
Query: 352 VQNLAEEN 359
+ + EEN
Sbjct: 325 YEKMVEEN 332
Score = 87 (35.7 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y K+E+S G+ R + ++ERA+ S +WL Y + ++ K N R+V+ RA
Sbjct: 92 YGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAE-MEMRCKQINHARNVFDRAITIM 150
Query: 89 PWVGELWV 96
P + W+
Sbjct: 151 PRAMQFWL 158
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 107 (42.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
AF+ I A +LR F+ G V + DK TG RG+ +V F +E L A+ +
Sbjct: 21 AFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHRGMGWVHFSSEEDLQNALQQE 80
Query: 454 KQMFLGKKLSIARSNPK 470
K + G KL I PK
Sbjct: 81 KHIIDGVKLHIQARRPK 97
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 107 (42.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
++ +++ T ++L+ FF G + +++ D+ TG+S+G A++ + + AV+K
Sbjct: 21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80
Query: 455 QMFL-GKKL--SIARSNPKQRKDSSG 477
+ L G+K+ +IAR N R+ G
Sbjct: 81 GIDLQGRKIRVNIARENTGDRRRDGG 106
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 107 (42.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
++ +++ T ++L+ FF G + +++ D+ TG+S+G A++ + + AV+K
Sbjct: 21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80
Query: 455 QMFL-GKKL--SIARSNPKQRKDSSG 477
+ L G+K+ +IAR N R+ G
Sbjct: 81 GIDLQGRKIRVNIARENTGDRRRDGG 106
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 107 (42.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D C F+ ++ + T E L+ +F G V ++ D T +SRG +V ++D +
Sbjct: 20 DPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKV 79
Query: 450 VAKNKQMFLGKKLS 463
+A+N+ K +S
Sbjct: 80 LAQNRHELDSKTVS 93
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 47/188 (25%), Positives = 86/188 (45%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQSPAK-RQKHAPQKPKKVHDKEKRQ 351
+ES+S +S VK R +S S +S + +S ++ R K + + H + R
Sbjct: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 352 VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKATY 405
++ + R T E + ++ + R ++ D T + ++L T
Sbjct: 72 -RSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTE 130
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKKLS 463
DLR FS G +S + +++D+ TG+SRG A+V F IDD A A ++ G+++
Sbjct: 131 RDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD-GRRIR 189
Query: 464 IARSNPKQ 471
+ S K+
Sbjct: 190 VDYSITKR 197
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 130 (50.8 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 47/188 (25%), Positives = 86/188 (45%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQSPAK-RQKHAPQKPKKVHDKEKRQ 351
+ES+S +S VK R +S S +S + +S ++ R K + + H + R
Sbjct: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 352 VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKATY 405
++ + R T E + ++ + R ++ D T + ++L T
Sbjct: 72 -RSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTE 130
Query: 406 EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKKLS 463
DLR FS G +S + +++D+ TG+SRG A+V F IDD A A ++ G+++
Sbjct: 131 RDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD-GRRIR 189
Query: 464 IARSNPKQ 471
+ S K+
Sbjct: 190 VDYSITKR 197
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 132 (51.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 77/354 (21%), Positives = 145/354 (40%)
Query: 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-- 58
+ R EEQ+ +++L + + + + + E+ SGDP RV+ +YERAI P S +
Sbjct: 303 LAKRRVQYEEQL-KENLRN---YDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKR 358
Query: 59 -------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW----VGELWVXXXXXXXXXXX 107
LW+ Y + + K + R VY+ K P ++W+
Sbjct: 359 HWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLN 418
Query: 108 XXXXISTVFEKSLLCAFST-FEEYLDLFLTRIDGLRRRILFSGEVE-------GVLDYSL 159
T+ + +C F Y+DL + +R R L+ ++E + Y+
Sbjct: 419 LQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAE 478
Query: 160 IR---ETFQRA-SDY-LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG 214
+ + +RA + Y L D ++ + E G + R ++ERLL+ +
Sbjct: 479 LERGLDDTERARAIYELGIDQPTLDMPELVWKAYIDFEDDEG-EYERERQLYERLLQKTD 537
Query: 215 AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274
+ + W +Y EI + E +R S E A FER + ++ +
Sbjct: 538 HV-KVWINYARFEINVPDEEEEEEEEERPIS-------DEAKRRARAVFERAHRVFKEKE 589
Query: 275 HSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQ 328
++V E L +R+ + + PE D+ E + + +++RK D + YE+
Sbjct: 590 LKEERV----ELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRRKLDDD-RYEE 638
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 133 (51.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 374 KQPIKD-AVP--GRTKG-------FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423
K P+K+ A P GRT G D F+ N+ ++ EDL + FS G VS +
Sbjct: 335 KAPLKNGAKPWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHY 394
Query: 424 LHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRKDSSGERAPT 482
D T K +G A+V F+ EH A A+ + Q+F G+ L + S K K++S E A
Sbjct: 395 PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK--KEAS-EDANA 451
Query: 483 EQAQSHQQTGNAGTSASKESS 503
++ S+++ + A+ SS
Sbjct: 452 PESSSYKKKKESKDKANSSSS 472
Score = 48 (22.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 325 SYEQSPAKRQKHA-PQKPKKVHDKEKR---QVQNLAEENEGRE 363
S + P + K A +PKK DK+K+ +++ L ++NE +E
Sbjct: 96 SSQSKPPPKDKDAISTEPKK-DDKKKKAAGELEKLKDDNEFQE 137
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 130 (50.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 122 (48.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+ +N +AT E +R +F + G + +I + D + K RG ++ F ++E + + K
Sbjct: 157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKF 216
Query: 455 QMFLGKKLSIARSNPKQ--RKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRG 512
G K I + PK+ ++ G + + ++ +G G S + S+ Q RG
Sbjct: 217 HTISGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGSGGQGSTNYGKSQRRG 276
Score = 44 (20.5 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR-FEREYGTLEDFDHSVQKVTPRLEEL 287
E D IN +++ + K F G S D L+ + ++G + D + T R
Sbjct: 56 EGDQINASKN--EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113
Query: 288 RLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDK 347
F +++ S+ + DQKEH + + +K+ ++ ++ P K+ P+ +K
Sbjct: 114 G-FILFKDATSVEKVLDQKEHRLDGRVIDPKKA---MAMKKDPVKKIFVGGLNPEATEEK 169
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 130 (50.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 130 (50.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 106 (42.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 396 LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKNK 454
+ N+ + + + LRR F G V + I D++T +SRG A+V F D A+ A +
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 455 QMFLGKKLSIARSNPKQRKDSS-GERAPTEQAQSHQQTGNAGTSASKES 502
+ G++L + + + DS R P +++S ++ + S S+ S
Sbjct: 78 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRSRSRSRSRSRSRSRSRYS 126
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 130 (50.8 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 90 (36.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 89 (36.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 87 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 144
Query: 88 CPWVGELW 95
P V + W
Sbjct: 145 LPRVNQFW 152
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 90 (36.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 89 (36.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 29 YLKYEQSSGDPGRVQLLYERAI-TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
Y ++E+S + R + +YERA+ D+ + LWL Y + K +V N R+++ RA
Sbjct: 87 YAQWEESLKEIQRARSIYERALDVDYR-NITLWLKYAEMEMKNRQV-NHARNIWDRAITT 144
Query: 88 CPWVGELW 95
P V + W
Sbjct: 145 LPRVNQFW 152
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 57/219 (26%), Positives = 100/219 (45%)
Query: 270 LEDFDHSV----QKVTPRLEELRLFRSQQESK-SLPESADQKEHS--VKKTGR-EKRKSD 321
L+D D +V +K+ EE RL + +LP + ++K+ K+ G+ E +
Sbjct: 154 LDDVDQTVVNPRRKIQTNKEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFR 213
Query: 322 SNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP---IK 378
S I E + +K K A K +K+H +K + ++E K + I+
Sbjct: 214 SLIPAEGTLSK--KLAAIK-RKIHPDQKNINAYVVFKDESAAAKALERNGAQIADGFRIR 270
Query: 379 DAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYV 438
+ T D+ + F+ N+ K + + F D G V ++RI+ D TG RG YV
Sbjct: 271 VDLASETSS-RDKRSVFVGNLPYKVEESAVEKHFLDCGSVVAVRIVRDPVTGVGRGFGYV 329
Query: 439 DFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQR-KDSS 476
F + + + A+ N +G+KL + RS K++ K +S
Sbjct: 330 LFENTDAVHLALKLNNSELMGRKLRVMRSIHKEKLKQNS 368
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 131 (51.2 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 49/217 (22%), Positives = 88/217 (40%)
Query: 271 EDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQS 329
+D D S ++ P ++ ++ KE S ++ ++ + DS + +
Sbjct: 166 DDDDESEEEEAPPPKKAAAAAKPAAKAPAAKAPAAKEESDEEEDDDEEEDDSEEEEMDTT 225
Query: 330 PAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFT 389
PA + K A K +E+ ++ E ET T ++ + + P K T
Sbjct: 226 PAPKAKKAGMVKAKEESEEEDDDDEEDDDEEEEETPATPAKRKAETKKEKGTPPAKKAKT 285
Query: 390 DE--CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLA 447
D + FL N+N +++L+ S + I D G ++ YVDF +E L
Sbjct: 286 DGEGFSLFLGNLNNNKDFDELKSAISKFFSKEGLEI-QDVRLGGTKKFGYVDFASEEELQ 344
Query: 448 AAVAKNKQMFLGK--KLSIARSNPKQRKDSSGERAPT 482
A+ N + LG+ KL ARS +++ A T
Sbjct: 345 KALELNGKKLLGQPVKLDKARSKENSQENKKERDART 381
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 130 (50.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 130 (50.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 130 (50.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 130 (50.8 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 130 (50.8 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>ASPGD|ASPL0000048939 [details] [associations]
symbol:AN1452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACD01000022 KO:K14837 RefSeq:XP_659056.1
ProteinModelPortal:Q5BDC8 STRING:Q5BDC8
EnsemblFungi:CADANIAT00008065 GeneID:2875093 KEGG:ani:AN1452.2
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR Uniprot:Q5BDC8
Length = 520
Score = 99 (39.9 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 31/116 (26%), Positives = 52/116 (44%)
Query: 416 GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMF---LGKKLSIARSNPKQR 472
G V S+R++ D+ T +G AYV F D + A+ N + F L +KL + R+ +
Sbjct: 365 GNVESVRVVRDRSTRVGKGFAYVQFYDQNCVEEALLLNDKRFPPLLPRKLRVVRAKKVAK 424
Query: 473 KDSSGERAPTEQAQSHQQTGNAGT--SASKESSIETSKQSRGRGDSVQLKGKNTFA 526
K AP ++ Q G AG S E+ ++ + + S+ +G A
Sbjct: 425 KSVETTGAPKGSDRTLQ--GRAGKLLGRSSEARLKAAAKKSISQSSLVFEGNRATA 478
Score = 76 (31.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQ 353
+++ P++A++ +V + KRK + E+S +R QK +K E+
Sbjct: 85 EDAPESPDAAEEAVQAVPEPPSRKRKRAAGEDLEESYMRRLAKEEQKEQKKRRAERSS-- 142
Query: 354 NLAEENEG--RETKQTVEEQPKKQ----PIKDAVPGRTKGFTDEC-----TAFLSNINLK 402
+L EE+E +E+ Q+ + + + + P +A+ G DE T FL N++ K
Sbjct: 143 SLEEESEDGEKESPQSEDGESEDEGADIPKHEALAGAAND-DDELSKSNRTVFLGNVSTK 201
Query: 403 A 403
A
Sbjct: 202 A 202
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 130 (50.8 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 47/189 (24%), Positives = 86/189 (45%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQSPAK-RQKHAPQKPKKVHDKEKR- 350
+ES+S +S VK R +S S +S + +S ++ R K + + H + R
Sbjct: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKAT 404
+ + + R T E + ++ + R ++ D T + ++L T
Sbjct: 72 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT 131
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKKL 462
DLR FS G +S + +++D+ TG+SRG A+V F IDD A A ++ G+++
Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD-GRRI 190
Query: 463 SIARSNPKQ 471
+ S K+
Sbjct: 191 RVDYSITKR 199
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 121 (47.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHL--AAAV 450
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 451 AKNKQMFLGK--KLSIARSN 468
NKQ+F G+ K SIA N
Sbjct: 71 INNKQLF-GRVIKASIAIDN 89
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 47/189 (24%), Positives = 86/189 (45%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQSPAK-RQKHAPQKPKKVHDKEKR- 350
+ES+S +S VK R +S S +S + +S ++ R K + + H + R
Sbjct: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKAT 404
+ + + R T E + ++ + R ++ D T + ++L T
Sbjct: 72 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT 131
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKKL 462
DLR FS G +S + +++D+ TG+SRG A+V F IDD A A ++ G+++
Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD-GRRI 190
Query: 463 SIARSNPKQ 471
+ S K+
Sbjct: 191 RVDYSITKR 199
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 124 (48.7 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 47/189 (24%), Positives = 86/189 (45%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQSPAK-RQKHAPQKPKKVHDKEKR- 350
+ES+S +S VK R +S S +S + +S ++ R K + + H + R
Sbjct: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKAT 404
+ + + R T E + ++ + R ++ D T + ++L T
Sbjct: 72 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT 131
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKKL 462
DLR FS G +S + +++D+ TG+SRG A+V F IDD A A ++ G+++
Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD-GRRI 190
Query: 463 SIARSNPKQ 471
+ S K+
Sbjct: 191 RVDYSITKR 199
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 124 (48.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 47/189 (24%), Positives = 86/189 (45%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNIS-YEQSPAK-RQKHAPQKPKKVHDKEKR- 350
+ES+S +S VK R +S S +S + +S ++ R K + + H + R
Sbjct: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKAT 404
+ + + R T E + ++ + R ++ D T + ++L T
Sbjct: 72 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT 131
Query: 405 YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKKL 462
DLR FS G +S + +++D+ TG+SRG A+V F IDD A A ++ G+++
Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD-GRRI 190
Query: 463 SIARSNPKQ 471
+ S K+
Sbjct: 191 RVDYSITKR 199
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 128 (50.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E +A+
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 453 -NKQMFLGKKLSIARSNPKQRKD---SSGERAP 481
N + F G+ L + + ++ K+ S G AP
Sbjct: 85 LNGREFSGRALRVDNAASEKNKEELKSLGTGAP 117
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 124 (48.7 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
TKG D+ F+ I+ + EDL F+ G V+ ++ +D+ G+SRG A+V+F E
Sbjct: 23 TKGNEDK-KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGE 81
Query: 445 HLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSI 504
A+A +Q GK + + + ++ K P++ S Q + K I
Sbjct: 82 GCKLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSDY--SEQDLRSHFEQFGKVDDI 139
Query: 505 ET--SKQSRGR 513
E KQ++ R
Sbjct: 140 EWPFDKQTKAR 150
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 127 (49.8 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 36/133 (27%), Positives = 67/133 (50%)
Query: 342 KKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKD-AVPGRTKGFTDECTAFLSNIN 400
+++ ++ + +V+ + EE E + T EE+ KK+ ++ A+P +L I
Sbjct: 48 EEIEEEIEEEVE-VEEEEEEEDAVATEEEEEKKRHVELLALPPHGS------EVYLGGIP 100
Query: 401 LKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKNKQMFLG 459
AT DL+ F +G V+ +RI+ +K +G +G A+V F + A A+ N F G
Sbjct: 101 TDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRG 160
Query: 460 KKLSIARSNPKQR 472
K++ + + K R
Sbjct: 161 KRIKCSTTQAKHR 173
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 129 (50.5 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 49/207 (23%), Positives = 95/207 (45%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPK-KVHDKEKR 350
++QES+ E D +E + E D+ + + P K P K K + D+E
Sbjct: 167 AKQESEE-EEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPA-KATPAKAKAESEDEEDE 224
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPG-RTKGFTDEC----------------T 393
+ ++ EE+E E ++ EE ++P+K+A PG R K ++ +
Sbjct: 225 EDEDEDEEDEDDE-EEDEEESEDEKPVKEA-PGKRKKEMANKSAPEAKKKKTETPASAFS 282
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
F+ N+ YE+LR + G ++++ + G S+ YVDF+ E + A+ N
Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI-GSSKRFGYVDFLSAEDMDKALQLN 341
Query: 454 KQMFLGKKLSIARSNPKQR-KDSSGER 479
+ +G ++ + ++ K+ K++ ER
Sbjct: 342 GKKLMGLEIKLEKAKSKESLKENKKER 368
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 129 (50.5 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 49/207 (23%), Positives = 95/207 (45%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPK-KVHDKEKR 350
++QES+ E D +E + E D+ + + P K P K K + D+E
Sbjct: 167 AKQESEE-EEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPA-KATPAKAKAESEDEEDE 224
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPG-RTKGFTDEC----------------T 393
+ ++ EE+E E ++ EE ++P+K+A PG R K ++ +
Sbjct: 225 EDEDEDEEDEDDE-EEDEEESEDEKPVKEA-PGKRKKEMANKSAPEAKKKKTETPASAFS 282
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
F+ N+ YE+LR + G ++++ + G S+ YVDF+ E + A+ N
Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI-GSSKRFGYVDFLSAEDMDKALQLN 341
Query: 454 KQMFLGKKLSIARSNPKQR-KDSSGER 479
+ +G ++ + ++ K+ K++ ER
Sbjct: 342 GKKLMGLEIKLEKAKSKESLKENKKER 368
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 42/179 (23%), Positives = 83/179 (46%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVH--DKEK 349
+ +ES +P +AD +V +T E + + E+ + A VH D
Sbjct: 8 TSEESFEIP-NADVAGSAVLET--ETSQDIHQLEIEKDAGETDSDAGSIAMNVHQLDTAG 64
Query: 350 RQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLR 409
+Q++ E+ + T + KK+P + P ++ ++ F+S I + ++L+
Sbjct: 65 EPLQSMNEDEVDPNNESTALD--KKEP--QSAPEGSENLGNDL--FVSGIASRMQEDELQ 118
Query: 410 RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARS 467
+ FS G V+ +RI+ + T SRG ++ F E +A+ N Q F G+ L++ ++
Sbjct: 119 QIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 126 (49.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + F+ N+ K + + F D G + ++RI+ DK TG +G YV F + + + A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344
Query: 450 VAKNKQMFLGKKLSIARSNPKQR 472
+ N +G+KL + RS K++
Sbjct: 345 LKLNNSELMGRKLRVMRSVNKEK 367
Score = 43 (20.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/91 (20%), Positives = 41/91 (45%)
Query: 278 QKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHA 337
+KV + + + + +S SAD +E +K G++++ S + A R+
Sbjct: 104 KKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKV----ADRKILD 159
Query: 338 PQKPKKVHDKEKRQVQNLAEENEGRETKQTV 368
+ V ++K Q+ +E E + ++TV
Sbjct: 160 DTEDTVVSQRKKIQIN---QEEERLKNERTV 187
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 127 (49.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 41/179 (22%), Positives = 78/179 (43%)
Query: 294 QESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQ 353
QE + L ++ T +K ++ +S + + KR+ H QK + K +
Sbjct: 174 QEEERLKNERTVFVGNLPVTCNKKIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEE-- 231
Query: 354 NLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFS 413
+ A + R Q + + + R D+ + F+ N+ K + + F
Sbjct: 232 SAATQALKRNGAQIADGFRIRVDLASETSSR-----DKRSVFVGNLPYKVEESAIEKHFL 286
Query: 414 DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQR 472
D G + ++RI+ DK TG +G YV F + + + A+ N +G+KL + RS K++
Sbjct: 287 DCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEK 345
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGERAPTEQ 484
K +F+G+K + ++ K +K S + +Q
Sbjct: 377 KSLFIGEKAVLLKTKKKGQKKSGRPKKQRKQ 407
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 423 ILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPT 482
IL DKF+G +G AY++F D E + ++A ++ +F G+++ + + S+ +R
Sbjct: 3 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRG-F 61
Query: 483 EQAQSHQQTGNAGTSASKESSIETSKQSRGR 513
+A+ +T N +S S+ S S+ RGR
Sbjct: 62 PRARYRARTTNYNSSRSRFYSGFNSRP-RGR 91
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 30/126 (23%), Positives = 64/126 (50%)
Query: 378 KDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAY 437
K A+P + T + F+ ++ +AT +D ++FF G V ++ DK TG+ RG +
Sbjct: 182 KRAIPRDEQEKTSKI--FVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGF 239
Query: 438 VDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTS 497
V F + + AA+++ ++ LGK + + ++ P+ G+R + + + G+
Sbjct: 240 VTFDSEAAVEAALSRPLEI-LGKTIEVKKAQPRGNLRDDGDRG--RRGRDFRDGSQGGSD 296
Query: 498 ASKESS 503
S++ +
Sbjct: 297 GSQQQA 302
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 117 (46.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 56/210 (26%), Positives = 90/210 (42%)
Query: 357 EENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVG 416
+EN R T ++ E K KD P + T F+ ++ AT E LR FS G
Sbjct: 230 KENHLRVTPASMAE--KFGQAKDQQPSDKDA---KRTIFVGSLKYSATEEQLREIFSSCG 284
Query: 417 GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSS 476
+ IR L D G +G+AYV F + + A+ N+ + + +++ R K+
Sbjct: 285 EIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKL---- 339
Query: 477 GERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQL---KGKNTFAVPRNVRP 533
G + + A A ++ASK SS +K G +L KGK +V + P
Sbjct: 340 GAKQVRDAA--------AASAASKTSSKTKAKNQNSAGAKKRLDKKKGKENGSVKKEGAP 391
Query: 534 LG------FPAIKPK-TEEGEDLKPKSNDE 556
G + +K ++ + K KSND+
Sbjct: 392 TGQKKKSEYRGVKVDGIKKAKKPKKKSNDQ 421
Score = 52 (23.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 319 KSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIK 378
K+ + E P K++ + K V K K + + + E K V+E PKK K
Sbjct: 5 KAKESEKAELKPIKKEPGVVEDGK-VTKKSKTKPKKKTVKVPKDEVKAAVQESPKKLSAK 63
Query: 379 D 379
D
Sbjct: 64 D 64
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 366 QTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILH 425
+TVE PK+ + + G T + F+ + E LR +F D G + S+ I+
Sbjct: 92 RTVE--PKRAVPRQEIDSPNAGATVK-KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVS 148
Query: 426 DKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSG 477
DK TGK RG A+++F D + + + + K L + ++ KQ D G
Sbjct: 149 DKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQG 200
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 43/190 (22%), Positives = 87/190 (45%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREK--RKSDSNISYEQSPAKRQKHAPQKPKKVHDKEK 349
S+ +SKS P + + S ++G R S + S+ +S +K + + + + + + +
Sbjct: 14 SRSQSKS-PAGSPARVKSESRSGSRSPSRASKHSESHSRSRSKSRSRSRRHSHRRYTRSR 72
Query: 350 RQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGR-----TKGFTDECTAF-LSNINLKA 403
+ + R T E + ++ + R ++ D T + ++L
Sbjct: 73 SHSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYT 132
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHLAAAVAKNKQMFLGKK 461
T DLR FS G ++ + +++D+ TG+SRG A+V F IDD A A ++ G++
Sbjct: 133 TERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELD-GRR 191
Query: 462 LSIARSNPKQ 471
+ + S K+
Sbjct: 192 IRVDYSITKR 201
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHL--AAAV 450
T ++SN+ T DL R FS G V + I+ DK T +S+G+A++ F+D +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 451 AKNKQMFLGK--KLSIARSN 468
NKQ+F G+ K SIA N
Sbjct: 71 INNKQLF-GRVIKASIAIDN 89
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 46/155 (29%), Positives = 73/155 (47%)
Query: 361 GRETKQTVEEQ-PKKQ-PIKDAVP--GRTKG-------FTDECTAFLSNINLKATYEDLR 409
GR + E+Q P + P K P GRT G D F+ N++ ++ EDL
Sbjct: 358 GRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLE 417
Query: 410 RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSN 468
+ FS G +S + D T K +G A+V F+ EH A A+ + Q+F G+ L + S
Sbjct: 418 KLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
Query: 469 PKQRKDSSGE-RAPTEQAQSHQQTGNAGTSASKES 502
K K++S E AP + ++ + S+S +
Sbjct: 478 IK--KEASQEANAPGSSYKKKKEAMDKANSSSSHN 510
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 41/173 (23%), Positives = 72/173 (41%)
Query: 351 QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRR 410
Q Q EE+ G + K+ P K D + ++ N++ + T +L
Sbjct: 122 QPQQQEEEDAGALLAGQLLSPEKEAGFPSDTPTE-KVEADHRSVYVGNVDYEGTARELEA 180
Query: 411 FFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPK 470
+F+ G + + IL DKF+G +G AY++F + A V + +F G + + PK
Sbjct: 181 YFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAPVELDNSVFRGPVIKVL---PK 237
Query: 471 QRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKN 523
R + G S + G G +++ S R RG + +G+N
Sbjct: 238 -RTNFPG-------ISSTDRGGLRGHPSARGRPFPHSSLERERGPRFRPRGRN 282
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
Identities = 37/148 (25%), Positives = 66/148 (44%)
Query: 392 CTAFLSNINLKATYEDLRRFFSD-VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV 450
C ++SNI ++DL+ F VG + +++ D+ +GK+RG V+F D E++ A+
Sbjct: 57 CRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGCGIVEFKDPENVQKAL 115
Query: 451 AK-NKQMFLGKKLSIARSNPKQR-------KDSSGERAPTEQAQSHQQTGNAGTSASKES 502
K N+ G++L + + +QR +D G Q N G
Sbjct: 116 EKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRD 175
Query: 503 SIETSKQSRGRGDSVQLKGKNTFAVPRN 530
++ + R D +L G+N F + N
Sbjct: 176 HMDDRDRGFSRRDDDRLSGRNNFNMMSN 203
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
Identities = 47/178 (26%), Positives = 77/178 (43%)
Query: 380 AVPGR---TKGFTDEC--TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRG 434
+VPG T+ D T F++N++ AT + L R F+ G V I+ D TG+ G
Sbjct: 463 SVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSG 522
Query: 435 LAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNA 494
AY++F E A++ + F+ + L I K S+G+ + S + G
Sbjct: 523 SAYIEFTRKEAAENALSLDGTSFMSRILKIV-------KGSNGQNQEAASSMSWSRGGRF 575
Query: 495 GTSAS--KESSIETSKQSRGRGDSVQLK------GKNTFAVPRNVRPLGFPAIKPKTE 544
+ S + ++ RG G S+Q K G N P N R L + + K++
Sbjct: 576 TRAPSYFRGGAVRGRSVVRGGGRSMQWKRDSADTGNNNNVAPNNARSLTYVRAESKSD 633
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 349 KRQVQNLAEENEG-RETKQTVEEQPKKQPIKD--AVPG--RTKGFTDECTAFLSNINLKA 403
K +V+ + EE E ++ + V++Q AVP K D + ++ N++ A
Sbjct: 48 KARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGA 107
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLS 463
+ E+L F G ++ + IL +K G +G AY++F E + A+A N+ +F G+++
Sbjct: 108 SAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIK 167
Query: 464 I 464
+
Sbjct: 168 V 168
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 122 (48.0 bits), Expect = 0.00023, P = 0.00023
Identities = 36/124 (29%), Positives = 60/124 (48%)
Query: 332 KRQKHAPQKPKKVHDKEKR---QVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGF 388
K K K++DK+ V+ AEE+ + K + D V + K F
Sbjct: 183 KLTKRVTHLTGKLNDKQSSLTFYVKFGAEESVEKALKYNGTKLDDHVIRVDKVGSKKKEF 242
Query: 389 TDECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLA 447
+ F+ N+ + T + L FFS +G V ++RI+ DK TGK +G A+V+F D ++
Sbjct: 243 GKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS 302
Query: 448 AAVA 451
A++
Sbjct: 303 LALS 306
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 92 (37.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244
Y Y ++E+ + +++ AR V+ER ++ +AWQ+Y++ E+ I+ AR IY+R
Sbjct: 148 YKY-TYMEEML-ENVAGARQVFERWMEWQPEE-QAWQTYVNFELRYKEIDRAREIYER-- 202
Query: 245 SKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEE 286
F D+ + W++F R + F H ++V R E
Sbjct: 203 ---FVYV-HPDVKN-WIKFAR-FEESHGFIHGSRRVFERAVE 238
Score = 81 (33.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88
Y ++E+ + R + ++ERA+ + + LWL Y + K +V N R+++ RA
Sbjct: 82 YAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQV-NHARNLWDRAVTIM 140
Query: 89 PWVGELW 95
P V + W
Sbjct: 141 PRVNQFW 147
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 136 (52.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 57/232 (24%), Positives = 106/232 (45%)
Query: 276 SVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKR-KSDSNISYE-QSPAKR 333
S + TP +LR + + E + + G+ + KS I + +S A+
Sbjct: 288 SAEASTPHTVKLRGAPLNVTEQKIREFFSPLKPLAIRMGKNTQGKSTGFIFVDLKSEAEV 347
Query: 334 QKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQT-VEEQPKKQPIKDAVPGRTKGFTDEC 392
QK A ++ K+ + +V EN +ET ++QP ++ +D + ++
Sbjct: 348 QK-ALKRKKEYIGGQYVEVSRC--ENAPKETVTAKTDDQPWQRMKRD--DEEEEDLSESG 402
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
F+ N+ +T EDL + FS G +S I D+ T K +G A++ ++ EH A A+
Sbjct: 403 RLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAE 462
Query: 453 -NKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESS 503
+ Q+F G+ + + S K+ K E E++ S+++ A A+ SS
Sbjct: 463 MDGQVFQGRMMHLLPSTIKKLKI---EDIDAEESSSYKKQKEAKDKANSASS 511
Score = 38 (18.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 498 ASKESSIETSKQSRGRGDSVQLKGKNTFAVPRN 530
A + SS + K+++ + +S NT V N
Sbjct: 490 AEESSSYKKQKEAKDKANSASSHNWNTLFVGTN 522
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 102 (41.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+QI R + Q ++ Y K+E+S D R + ++ERA+ + LW+ Y
Sbjct: 64 RKEFEDQIRRARWN----IQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYA 119
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
++ K V N R+V+ R+ P V +LW
Sbjct: 120 EFEMKNKFVNNA-RNVWDRSVTLLPRVDQLW 149
Score = 98 (39.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD------ 58
R E+++S+ L+ + + Y++ E+S G+ R++ +YERAI + P + +
Sbjct: 314 RFEYEDEVSKNPLN----YDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQR 369
Query: 59 ---LWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89
LW++Y Y + K RDVY K P
Sbjct: 370 YIYLWINYALYEEIETKDVERTRDVYRECLKLIP 403
Score = 70 (29.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 33/131 (25%), Positives = 52/131 (39%)
Query: 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-----DHINEARS 238
L+ + E S G + R ++ERLL + + W S+ E D I AR
Sbjct: 515 LWKTYIDFEISEG-EFEKTRALYERLLDRT-KHCKVWISFAKFEASASEHKEDGIKSARV 572
Query: 239 IYKRC--YSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQ 293
I+ R Y K T E+ + WL E +G L D K+ +L++ ++ +
Sbjct: 573 IFDRANTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSVVQSKLPKKLKKRKMTSRE 632
Query: 294 QESKSLPESAD 304
S E D
Sbjct: 633 DGSTEYEEYFD 643
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 128 (50.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 39/147 (26%), Positives = 71/147 (48%)
Query: 358 ENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGG 417
+N+ R K++ E+ + +KD + + F+ N+ T EDL+ FS G
Sbjct: 367 KNDRRSAKRSEMEKNFVRELKD--DEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGP 424
Query: 418 VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRKDSS 476
+S + D T K +G A+V ++ E+ +A+A+ + F G+ L + S K+ K
Sbjct: 425 LSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQ 484
Query: 477 GERAPTEQAQSHQQTGNAGTSASKESS 503
G AP + S+++ +A A+ SS
Sbjct: 485 GPDAPG--SSSYKRKKDAKDKAASGSS 509
Score = 46 (21.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 291 RSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDK-EK 349
+ E K E ++++ KK + + S+++ A QK Q P +D E
Sbjct: 99 KKDTEEKKTHEQGEKEKKKPKKILNVLGDLEKDESFQEFLAVHQKRG-QVPTWANDTVEA 157
Query: 350 RQVQNLAEENEGRETKQTVEE 370
V+ E+ + ++ K VE+
Sbjct: 158 TAVRPEMEKKKEKKQKAAVED 178
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 107 (42.7 bits), Expect = 0.00025, P = 0.00025
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
T ++ N+ KA ++ F++ G V ++R++ DK TGK RG +V + A A
Sbjct: 65 TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDAL 124
Query: 453 NKQMFLGKKLSIARSN-PKQRKD 474
N++ ++ + L + +N PK ++
Sbjct: 125 NEKEYMQRTLKVRIANDPKSDEE 147
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 107 (42.7 bits), Expect = 0.00025, P = 0.00025
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
T ++ N+ KA ++ F++ G V ++R++ DK TGK RG +V + A A
Sbjct: 65 TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDAL 124
Query: 453 NKQMFLGKKLSIARSN-PKQRKD 474
N++ ++ + L + +N PK ++
Sbjct: 125 NEKEYMQRTLKVRIANDPKSDEE 147
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 133 (51.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 46/150 (30%), Positives = 69/150 (46%)
Query: 362 RETKQTVEEQPKKQPIKDAVPGRTKG-------FTDECTAFLSNINLKATYEDLRRFFSD 414
RE + P K K A GRT G D F+ N+ ++ EDL + FS
Sbjct: 367 REKSIPTAKAPPKNSTK-AWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSK 425
Query: 415 VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIARSNPKQRK 473
G +S + D T K +G A+V F+ EH A A+ + Q+F G+ L + S K K
Sbjct: 426 YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK--K 483
Query: 474 DSSGERAPTEQAQSHQQTGNAGTSASKESS 503
++S E T + S+++ + AS SS
Sbjct: 484 EAS-EDTDTPGSSSYKKKKESKDKASSSSS 512
Score = 41 (19.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 325 SYEQSPAKRQKHAPQKPKKVHDKEK--RQVQNLAEENEGRE 363
S + P K + P + KK + K+K +++ L +++E +E
Sbjct: 97 SQSKPPPKDKDSVPPEAKKDNRKKKVAGELEKLKKDDEFQE 137
Score = 38 (18.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 295 ESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQN 354
+SK P+ D KK R+K+ ++ E K+ Q+ VH K + QV
Sbjct: 98 QSKPPPKDKDSVPPEAKKDNRKKK-----VAGELEKLKKDDEF-QEFLSVHQK-RTQVAT 150
Query: 355 LAEE 358
A +
Sbjct: 151 WAND 154
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 136 (52.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 65/277 (23%), Positives = 120/277 (43%)
Query: 284 LEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSD-SNISYEQSPAKRQKHAPQKPK 342
L+ L FRS + E ++ + V + E + D +N ++ K + K +
Sbjct: 263 LDWLSKFRSNND-----EIIEKNQSIVYRDEEESEEEDVNNKENKKDKMKIDDNKENKKE 317
Query: 343 KVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTA---FLSNI 399
K DK+K + N +N+G + ++ K +PIK TK D + F+ N+
Sbjct: 318 KKKDKKKNKKDN---DNDGDD------DESKIKPIKYFEHDYTKEDEDVGESGRIFVRNL 368
Query: 400 NLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFL 458
+ EDL + FS G +S I I D + KS+G+A++ ++ E+ A+ + ++F
Sbjct: 369 SYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQ 428
Query: 459 GKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQ 518
G+ + + P G+ AP +Q ++ N G SS + K+ + + S
Sbjct: 429 GRLIHVL---P-------GKAAPAKQFSENKDNNNNGAEGGS-SSFKAEKEQKQKTTSGS 477
Query: 519 LKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSND 555
N + R+ + A + K +G+ L P D
Sbjct: 478 THNWNALFM-RSDAIVSSLAERYKMTQGQLLDPNQMD 513
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 51 TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90
T+ + L L+ T ++D T K+ V S T+N PW
Sbjct: 52 TEQSAKNALSLNGT-FID-TSKIVVETATVASETTENRPW 89
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 96 (38.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 152 EGVLDYSLI-RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ D + + ++ YA W E+S+ K++ AR ++ER L
Sbjct: 206 EELNDYKLRKRKTFE---DNIRKNRTVISNWIK-YAQW---EESL-KEIQRARSIYERAL 257
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+ + W Y ME++ +N AR+I+ R
Sbjct: 258 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDR 289
Score = 78 (32.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 37/179 (20%), Positives = 82/179 (45%)
Query: 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS--VQKV 280
YI +E++L + R +Y++ F G E+ C +W++F L D D + + ++
Sbjct: 600 YIELELQLREFDRCRKLYEK-----FLEFGPEN-CTSWIKFAELETILGDIDRARAIYEL 653
Query: 281 T---PRLEELR-LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKH 336
PRL+ L++S + + E ++ + ++ + + IS+ Q K
Sbjct: 654 AISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKE 713
Query: 337 AP-QKPKKVHDKEKRQVQNLAEENEGR----ETKQTVEEQ----PKKQPIKDAVPGRTK 386
K ++++++ + ++N EE E R E+ ++ EE+ K+ + +P + K
Sbjct: 714 GSLTKCRQIYEEANKTMRN-CEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVK 771
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 96 (38.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 152 EGVLDYSLI-RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210
E + DY L R+TF+ D + + ++ YA W E+S+ K++ AR ++ER L
Sbjct: 218 EELNDYKLRKRKTFE---DNIRKNRTVISNWIK-YAQW---EESL-KEIQRARSIYERAL 269
Query: 211 KISGAMLEAWQSYISMEIELDHINEARSIYKR 242
+ + W Y ME++ +N AR+I+ R
Sbjct: 270 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDR 301
Score = 78 (32.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 37/179 (20%), Positives = 82/179 (45%)
Query: 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHS--VQKV 280
YI +E++L + R +Y++ F G E+ C +W++F L D D + + ++
Sbjct: 612 YIELELQLREFDRCRKLYEK-----FLEFGPEN-CTSWIKFAELETILGDIDRARAIYEL 665
Query: 281 T---PRLEELR-LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKH 336
PRL+ L++S + + E ++ + ++ + + IS+ Q K
Sbjct: 666 AISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKE 725
Query: 337 AP-QKPKKVHDKEKRQVQNLAEENEGR----ETKQTVEEQ----PKKQPIKDAVPGRTK 386
K ++++++ + ++N EE E R E+ ++ EE+ K+ + +P + K
Sbjct: 726 GSLTKCRQIYEEANKTMRN-CEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVK 783
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
Identities = 63/260 (24%), Positives = 118/260 (45%)
Query: 292 SQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQ 351
+Q++S + P A + +VKK +E+ ++ I+ + ++ Q + K +
Sbjct: 73 AQKKSATTPTKASSTK-AVKKAEKEEVVAEEEIALDDDNDSEEEREDQA---LVTKLGFE 128
Query: 352 VQNLAEENEGRETKQT-VEEQPK--KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDL 408
V + EE G T T V + PK + K A G + G ++ +I ++
Sbjct: 129 VSD-DEEEGGDYTAGTDVGKVPKVSTKVKKSAQAGSSDG---PRVIYIGHIPYGFFEHEI 184
Query: 409 RRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL--GKKLSIAR 466
R++ S G ++++R+ +K TG S+G A+V+F D AA VAK +L G+ L + +
Sbjct: 185 RQYLSQFGTITNLRLSRNKKTGASKGYAFVEF-QDASTAAIVAKTMDAYLLFGRILKV-K 242
Query: 467 SNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFA 526
P++ + + + + + T AG KE +E K G +V+ + +
Sbjct: 243 LVPRESQHDNLFKGANRRFKKVPWTKMAG----KE--LEKPKGEARWGKAVEKENRRRSG 296
Query: 527 VPRNVRPL-GF----PAIKP 541
+R L G+ PA+KP
Sbjct: 297 RLEKLRELMGYEFEAPAVKP 316
>UNIPROTKB|E2R7P6 [details] [associations]
symbol:THRAP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030521
"androgen receptor signaling pathway" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0004872 "receptor activity" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
GO:GO:0030521 GO:GO:0045944 GO:GO:0004872 GO:GO:0003713
GO:GO:0006367 GeneTree:ENSGT00530000063211 GO:GO:0016592
GO:GO:0001104 CTD:9967 KO:K13112 OMA:KMKEKGS InterPro:IPR026667
PANTHER:PTHR15268:SF7 EMBL:AAEX03009637 RefSeq:XP_539593.2
Ensembl:ENSCAFT00000005432 GeneID:482476 KEGG:cfa:482476
NextBio:20857062 Uniprot:E2R7P6
Length = 958
Score = 96 (38.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 35/130 (26%), Positives = 54/130 (41%)
Query: 240 YKRCYSKRFTGTGSEDICHAWLRFERE-YGTLE-DFDHSVQKVTPRLEELRLFRSQQESK 297
+ R Y + + G + W ++ R YG ++ + Q +PR R RS +
Sbjct: 76 HNRGYRRPYYFRGRNRGFYPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRS-RSPKRRS 134
Query: 298 SLPESADQKEHSVKKTG-REKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLA 356
P S +S K + R +R S S S S + K K KK K+ R Q A
Sbjct: 135 PSPRSRSHSRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPSQ-AA 193
Query: 357 EENEGRETKQ 366
+N+G E K+
Sbjct: 194 GDNQGDEAKE 203
Score = 79 (32.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 53/223 (23%), Positives = 89/223 (39%)
Query: 348 EKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYED 407
E+++ +N ++ E ++T E+ +K D G TK +D F A D
Sbjct: 351 EEQKTEN-GKDKEQKQTNTDKEKMKEKGSFSDTGLGDTKMKSDP---F-------APKTD 399
Query: 408 LRRFFSDVGGVSSIRI-LHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLG--KKLS- 463
+ F G S R L D F K + D +DD+ A + + F K +S
Sbjct: 400 TEKSFR--GSQSPKRYKLRDDFEKKMADF-HKDDMDDQDKDKAKGRKESEFDDEPKFMSK 456
Query: 464 -IARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGK 522
IA +N Q ++ SG+ A ++ +ES E SK+ G G
Sbjct: 457 VIAGANKNQEEEKSGKWEGLVYAPPGKEKQRKTEELEEESFSERSKKEDRGGPKRTESGH 516
Query: 523 NTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKMFIKKD 565
F +N R + A++ K+ L+ K+++ K+ K D
Sbjct: 517 RGFVPEKNFRVTAYKAVQEKSSS-PPLR-KTSESREKLGAKGD 557
>UNIPROTKB|I3LL94 [details] [associations]
symbol:I3LL94 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016529 "sarcoplasmic reticulum" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005102
"receptor binding" evidence=IEA] InterPro:IPR010798 GO:GO:0016021
GO:GO:0016529 PANTHER:PTHR14106 GeneTree:ENSGT00510000049207
EMBL:CU928609 Ensembl:ENSSSCT00000029492 OMA:CARNIFL Uniprot:I3LL94
Length = 206
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 37/150 (24%), Positives = 71/150 (47%)
Query: 264 EREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKE--HSVKKTGREKRKSD 321
E + G +ED D + P +++ + + + E + PE Q + H K +EK K +
Sbjct: 44 EDDEGGVEDTDKGEIEEPPVKKKVEIHKEKTEKQEKPERKTQTKVTHREKDKAKEKEKPE 103
Query: 322 SNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP--IKD 379
++++ K++K P+ +++K + + AEE +E K +E+ K+ IKD
Sbjct: 104 KKATHKEKIEKKEK--PETKTVAKEEKKTKTKEKAEEKSKKEVKGGKQEKVKQTAAKIKD 161
Query: 380 AV-PG-RTKGFTDECTAFLSNINLKATYED 407
A P + KG ++ A LS K + +
Sbjct: 162 AQKPSPKPKGKDEKDAAALSKHEQKGKHSE 191
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 108 (43.1 bits), Expect = 0.00029, P = 0.00029
Identities = 30/137 (21%), Positives = 61/137 (44%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
++E F+ +N + L FS G +S + ++ D+ T +SRG ++ F + EH +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 449 AV-AKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTG-NAGTSASKESSIET 506
A+ A N + G+++ + + R G + +S+ + G + G + + S
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDS-RP 121
Query: 507 SKQSRGRGDSVQLKGKN 523
G G S G++
Sbjct: 122 GGYGYGYGRSRDYSGRS 138
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 126 (49.4 bits), Expect = 0.00029, P = 0.00029
Identities = 37/142 (26%), Positives = 67/142 (47%)
Query: 327 EQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTK 386
+ +P++ + P +P+ V D E + +N EE + + EE+ +++ ++++PG
Sbjct: 673 QDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPG--- 729
Query: 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK---SRGLAYVDFIDD 443
CT F+ N+N T E L+ FS VG V S I K S G +V++
Sbjct: 730 -----CTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKP 784
Query: 444 EHLAAAVAKNKQMFL-GKKLSI 464
E A+ + + + G KL +
Sbjct: 785 EQAQKALKQLQGHVVDGHKLEV 806
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 124 (48.7 bits), Expect = 0.00032, P = 0.00032
Identities = 44/210 (20%), Positives = 92/210 (43%)
Query: 280 VTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQ 339
V P +E +++ + E D+ E T K + + AK + +
Sbjct: 160 VVPAKQESEE-EEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESE-DE 217
Query: 340 KPKKVHDKEKRQVQNLAEENEGRETKQTVEEQP---KKQPIKDAVPGRTKGFTD-ECTA- 394
+ ++ D+++ + E+ E E ++ V+E P KK+ + P K T+ + A
Sbjct: 218 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPAS 277
Query: 395 ----FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV 450
F+ N+ YE+LR + G ++++ + G S+ YVDF+ E + A+
Sbjct: 278 AFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI-GSSKRFGYVDFLSAEDMDKAL 336
Query: 451 AKNKQMFLGKKLSIARSNPKQR-KDSSGER 479
N + +G ++ + ++ K+ K++ ER
Sbjct: 337 QLNGKKLMGLEIKLEKAKSKESLKENKKER 366
>WB|WBGene00044205 [details] [associations]
symbol:T13F3.8 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA]
GeneTree:ENSGT00690000102102 EMBL:Z93389 eggNOG:NOG314938
RefSeq:NP_001024138.1 UniGene:Cel.30179 ProteinModelPortal:Q564Q7
EnsemblMetazoa:T13F3.8 GeneID:3565698 KEGG:cel:CELE_T13F3.8
UCSC:T13F3.8 CTD:3565698 WormBase:T13F3.8 InParanoid:Q564Q7
OMA:REMSTVK NextBio:957503 Uniprot:Q564Q7
Length = 212
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 37/138 (26%), Positives = 68/138 (49%)
Query: 278 QKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHA 337
+KV + EE + E K P+ ++K+ KK +E++K + E+ + +K
Sbjct: 72 EKVEKKPEE----NKEAEKKDEPKKEEEKKEEEKK--KEEKKEEEK--KEEVKEEEKKDD 123
Query: 338 PQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLS 397
++ +K D EK++ E+NE ++ ++ +E+PKK+ I VP K +TD+ A
Sbjct: 124 SKRDEKKKDGEKKEDDENKEDNEKKKEEKKEDEKPKKEEI---VPQEQK-YTDKEQAIAD 179
Query: 398 NINLKAT-YEDLRRFFSD 414
+ K T Y + SD
Sbjct: 180 GVKKKRTDYPTMEDVASD 197
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 127 (49.8 bits), Expect = 0.00032, P = 0.00032
Identities = 44/184 (23%), Positives = 87/184 (47%)
Query: 270 LEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQS 329
++ D + +V +EE +F +QE+K + + + HS + R RK S +S
Sbjct: 368 IQQQDMDIDEVQDAVEE-EIF--EQEAKKVAVRSRSRTHS-RSRSRSPRKRRSR---SRS 420
Query: 330 PAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFT 389
++++KH + + +++++ ++ + E RE ++ E Q K P P R+K +
Sbjct: 421 GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREK--ERQKKGLP-----PIRSKTLS 473
Query: 390 D-ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
T ++ ++ KAT +DL F + G + SI ++ RG AYV + +
Sbjct: 474 VCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMI------PPRGCAYVCMVHRQDAFR 527
Query: 449 AVAK 452
A+ K
Sbjct: 528 ALQK 531
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 37/136 (27%), Positives = 65/136 (47%)
Query: 341 PKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQP--IKDAVP--GRTKGFTDECTAFL 396
PK V ++ + + +N+ ETK + Q K+ + V G GF + FL
Sbjct: 83 PKSVEIVQRARPHTI--DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFL 140
Query: 397 SNINLKATYED--LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
LK +++ +R +FS G V+S+++L D+ TG+ R +++F+D A+A K
Sbjct: 141 GG--LKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRK 198
Query: 455 QMFLGKKLSIARSNPK 470
L + + RS K
Sbjct: 199 HWILQTLVEVKRSTQK 214
>ZFIN|ZDB-GENE-040426-1460 [details] [associations]
symbol:akap17a "A kinase (PRKA) anchor protein
17A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 ZFIN:ZDB-GENE-040426-1460
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BC058319
IPI:IPI00482189 UniGene:Dr.78530 ProteinModelPortal:Q6PE21
HOVERGEN:HBG097697 ArrayExpress:Q6PE21 Uniprot:Q6PE21
Length = 531
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 60/258 (23%), Positives = 108/258 (41%)
Query: 281 TPRLEELRLFRSQQESKSLPESADQKEHSVK--KTGREKRKSDSNISYEQSPAKRQKHAP 338
T L E L + QQE + L E Q+E + K E+RK + EQ ++++
Sbjct: 258 TKHLSESSLKKRQQERQKLQELEKQREEQKRREKEDEERRKEEERKQREQEEQEKERRRE 317
Query: 339 QK----PKKVHDKEKRQVQNLA---EENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDE 391
+K +K+ +KE+++ Q +E E ++ K+ EE+ KK +K + R
Sbjct: 318 EKLRRREQKLKEKEEKKNQKKLKKQQEEEQKKMKKQQEEEQKKLQLKIQMEERKLLLAQR 377
Query: 392 CTAFLSNINLKATY-EDLRRFFSDVGGVSSIRI--LHDKFTGKSRGLAYVDFIDDEHLAA 448
L +I L A +R V +R+ L + + + L V+ E A
Sbjct: 378 N---LQSIRLLAELLSRAKREREREQQVECVRLQQLQQRRREQEQELRRVE---QEKSRA 431
Query: 449 AVAKNKQMFLGKKL--SIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIET 506
+ ++ L ++L ++ ++N ++D EQ QS Q S+ S T
Sbjct: 432 LELQRRERELRQRLLDNLLKNNTHAQRDDDTHALKEEQQQSKTQQKKTRAERSRRSRSRT 491
Query: 507 SKQSRGRGDSVQLKGKNT 524
+SR R S G+++
Sbjct: 492 HTRSRRRRRSTHSHGQSS 509
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 396 LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKNK 454
+ N+ + + + LRR F G V + I D++T +SRG A+V F D A+ A +
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 455 QMFLGKKLSIARSNPKQRKDSS-GERAPTEQAQSHQQTGNAGTSASKESSIETSK 508
+ G++L + + + DS R P + G S S+ S S+
Sbjct: 78 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSRSRSRSRSRSR 132
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
++ N+ DL ++FS G + S++I+ + TG+S+G A+V ++ + A+ +
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAHG 106
Query: 455 QMFLGKKL--SIARSNPKQ 471
+ G+ L IA+S +Q
Sbjct: 107 KDLQGRSLVVRIAKSREQQ 125
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
++ N+ DL ++FS G + S++I+ + TG+S+G A+V ++ + A+ +
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAHG 106
Query: 455 QMFLGKKL--SIARSNPKQ 471
+ G+ L IA+S +Q
Sbjct: 107 KDLQGRSLVVRIAKSREQQ 125
>RGD|1585290 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1585290 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473982 CTD:81892
GeneTree:ENSGT00390000008624 OrthoDB:EOG4Z62Q4 IPI:IPI00365864
RefSeq:NP_001102977.1 UniGene:Rn.65910 Ensembl:ENSRNOT00000016479
GeneID:688717 KEGG:rno:688717 UCSC:RGD:1585290 NextBio:737107
Uniprot:D4A4W6
Length = 111
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 28/93 (30%), Positives = 41/93 (44%)
Query: 380 AVPGRT--KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAY 437
AV G T + T AF+ I A +LR F+ G V + DK TG RG+ +
Sbjct: 5 AVKGLTALRSRTGRPIAFIRKIPWTAASSELREHFAQFGHVRRCTVPFDKETGFHRGMGW 64
Query: 438 VDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPK 470
V F E L A+ + + G ++ + PK
Sbjct: 65 VQFSSQEELQNALQEEHHIIDGVEIHVQPQKPK 97
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 369 EEQPKKQPIKDAVPGR---TKGFTDE--CTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423
+E+P + I A+ R KG T + T F++ +NL+ T E L+ FS G + IR+
Sbjct: 28 DEEPHDRAIWRAMLARYVPNKGVTGDPHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRL 87
Query: 424 LHDKFTGKSRGLAYVDFIDDEHLAAA 449
+ D TG S+G A++++ ++ L A
Sbjct: 88 VRDLVTGFSKGYAFIEYKEERALLKA 113
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 102 (41.0 bits), Expect = 0.00042, P = 0.00042
Identities = 36/138 (26%), Positives = 68/138 (49%)
Query: 344 VHDKEKRQVQNLAEE-NEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLK 402
V + E+ + + LA+ N R T V+E+ A G + + F++NI+ +
Sbjct: 12 VANAERSRGRGLAQSRNRERITYDVVDEE------SSATSGAPQRSVEGWIVFVTNIHEE 65
Query: 403 ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKK 461
AT +D+ FS+ G + +I + D+ TG +G A V++ + A+ + N LG+
Sbjct: 66 ATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQN 125
Query: 462 LSIARSNPKQRKDSSGER 479
+ + K +K +SG+R
Sbjct: 126 VKVDWCFVKGKK-TSGKR 142
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 116 (45.9 bits), Expect = 0.00046, P = 0.00046
Identities = 33/124 (26%), Positives = 60/124 (48%)
Query: 345 HDKEKRQVQNLAEEN-EGRETKQTVEEQPKKQPIKDAVPGRTKGFTDEC--TAFLSNINL 401
HD++ ++L E+ R+ KQ + + + IK P + + T FLS ++
Sbjct: 50 HDQQYHPTESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSY 109
Query: 402 KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL-GK 460
D+ R F+ G + IR++ +K TGKS G A+V F + L A + + L G+
Sbjct: 110 DTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGR 169
Query: 461 KLSI 464
++ +
Sbjct: 170 RIVV 173
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 113 (44.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 32/122 (26%), Positives = 55/122 (45%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+ +N +AT E +R +F + G + +I + D K RG ++ F ++E + + K
Sbjct: 157 FVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKF 216
Query: 455 QMFLGKKLSIARSNPK----QRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
G K I + PK Q++ SG R ++ GN G+ + S+ Q
Sbjct: 217 HTVSGSKCEIKVAQPKEVYQQQQYGSGGRG-------NRNRGNRGSGGGQGSTNYGKSQR 269
Query: 511 RG 512
RG
Sbjct: 270 RG 271
Score = 44 (20.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR-FEREYGTLEDFDHSVQKVTPRLEEL 287
E D IN +++ + K F G S D L+ + ++G + D + T R
Sbjct: 56 EGDQINASKN--EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113
Query: 288 RLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDK 347
F +++ S+ + DQKEH + + +K+ ++ ++ P K+ P+ +K
Sbjct: 114 G-FILFKDAASVEKVLDQKEHRLDGRVIDPKKA---MAMKKDPVKKIFVGGLNPEATEEK 169
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 48/179 (26%), Positives = 82/179 (45%)
Query: 304 DQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRE 363
DQK KK R+K +S+S ++ + + +A + + E + V + ++
Sbjct: 4 DQKAIESKK--RKKEESES-----ETESSEENNASSSSESESEDELKVVGEGSSSSKSTF 56
Query: 364 TKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRI 423
TK K+ KD TK D+ F+ + T DL+ +FS+ G +S+I+I
Sbjct: 57 TK-------KESAAKDE-SSNTKT-DDDLKVFVGQLPSGVTEYDLKEYFSECGDISNIKI 107
Query: 424 LHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPT 482
L+ + R A++ F D++ A+ N + F G+ S+ R N K S GE PT
Sbjct: 108 LN---SNPQRVAAFITFADEKGRDTAITYNGKDFNGQG-SL-RINGANSKPSDGEGEPT 161
>UNIPROTKB|Q32P59 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
Uniprot:Q32P59
Length = 111
Score = 97 (39.2 bits), Expect = 0.00049, P = 0.00049
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
AF+ I A +LR F+ G V + DK TG +G+ ++ F +E L A+ +
Sbjct: 21 AFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHKGMGWIHFSSEEELHNALQQE 80
Query: 454 KQMFLGKKLSIARSNPK 470
+ G KL + PK
Sbjct: 81 NHVIDGVKLHVQPQRPK 97
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 97 (39.2 bits), Expect = 0.00049, P = 0.00049
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF--IDDEHL 446
+DE F+ ++ + L + FS G +S + ++ D+ T +SRG +V F IDD
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK- 61
Query: 447 AAAVAKNKQMFLGKKLSIARSNPKQRKDSSGER 479
A +A N + G+++ + ++ S G R
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYR 94
>UNIPROTKB|Q9GZT3 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
CTD:81892 eggNOG:NOG291073 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 EMBL:AY860853 EMBL:AJ272055 EMBL:AF253980
EMBL:AF271779 EMBL:BC017895 IPI:IPI00009922 RefSeq:NP_001254792.1
RefSeq:NP_001254793.1 RefSeq:NP_112487.1 UniGene:Hs.655105
ProteinModelPortal:Q9GZT3 SMR:Q9GZT3 IntAct:Q9GZT3 STRING:Q9GZT3
PhosphoSite:Q9GZT3 DMDM:74762723 PaxDb:Q9GZT3 PeptideAtlas:Q9GZT3
PRIDE:Q9GZT3 DNASU:81892 Ensembl:ENST00000557342 GeneID:81892
KEGG:hsa:81892 UCSC:uc001xue.4 GeneCards:GC14P078175
HGNC:HGNC:20495 HPA:HPA020291 MIM:610211 neXtProt:NX_Q9GZT3
PharmGKB:PA134892132 InParanoid:Q9GZT3 PhylomeDB:Q9GZT3
ChiTaRS:SLIRP GenomeRNAi:81892 NextBio:72246 ArrayExpress:Q9GZT3
Bgee:Q9GZT3 CleanEx:HS_C14orf156 Genevestigator:Q9GZT3
GermOnline:ENSG00000119705 Uniprot:Q9GZT3
Length = 109
Score = 97 (39.2 bits), Expect = 0.00049, P = 0.00049
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
AF+ I A L+ F+ G V + DK TG RGL +V F +E L A+ +
Sbjct: 21 AFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQE 80
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGER 479
+ G K+ + PK + S E+
Sbjct: 81 NHIIDGVKVQVHTRRPKLPQTSDDEK 106
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 32/124 (25%), Positives = 62/124 (50%)
Query: 349 KRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPG--------RTKGFTDECTAFLSNIN 400
K +V+ + EE E + KQ ++ + KQ + G K D + ++ N++
Sbjct: 48 KARVKEMEEEAE--KIKQ-MQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVD 104
Query: 401 LKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGK 460
A+ E+L F G ++ + IL +K G +G AY++F E + A+A N+ +F G+
Sbjct: 105 YGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGR 164
Query: 461 KLSI 464
++ +
Sbjct: 165 QIKV 168
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 107 (42.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R E+QI R + Q ++ Y ++E+S D R + ++ERAI + LWL Y
Sbjct: 78 RKEFEDQIRRARWN----IQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYA 133
Query: 65 QYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95
++ K K N R+V+ RA P V +LW
Sbjct: 134 EFEMKN-KFVNSARNVWDRAVTLLPRVDQLW 163
Score = 62 (26.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 22/84 (26%), Positives = 35/84 (41%)
Query: 226 MEIELDHINEARSIYKRC--YSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280
+E + D I AR+I+ R Y K T E+ + WL E +G L D K+
Sbjct: 590 IEHKKDCIKRARAIFDRANTYYKDSTPELKEERATLLEDWLNMESSFGNLGDVSIVQSKL 649
Query: 281 TPRLEELRLFRSQQESKSLPESAD 304
+L++ + + S E D
Sbjct: 650 PKKLKKRKAITREDGSTEYEEYID 673
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 115 (45.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + F+ N+ K L F D G + ++RI+ + TG RG YV F + + + A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348
Query: 450 VAKNKQMFLGKKLSIARSNPKQR 472
+ N +G+KL + RS K++
Sbjct: 349 LKLNNSELMGRKLRVMRSVNKEK 371
Score = 46 (21.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 311 KKTGREKRKSDSNISYEQSPAKRQKHAPQKP------KKVHDKEKR 350
++T ++++ D + E+S ++ +K Q+P KK+ D +KR
Sbjct: 74 QETSKKRKLDDDDDDEEESVSQTKKPVLQEPSRKVKVKKLSDADKR 119
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 113 (44.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+ I+ T E+ FFS G + +++ DK TG+SRG +V + D V NK
Sbjct: 249 FVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTY-DSPAAVDKVCVNK 307
Query: 455 QMFL-GKKLSIARSNPKQRKDSSGERAPTEQAQSHQQ 490
+ L GK + + R+ P+ + + ++ +Q Q QQ
Sbjct: 308 YLTLKGKAMEVKRAAPRGQHN---QQVMMQQQQQQQQ 341
Score = 51 (23.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 483 EQAQSHQQTGNAGTSASKES 502
+QAQ+ QQ +GTSAS E+
Sbjct: 387 QQAQAAQQQQQSGTSASPEA 406
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 108 (43.1 bits), Expect = 0.00054, P = 0.00054
Identities = 40/149 (26%), Positives = 61/149 (40%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
F+ N+ EDLRR F G + + + D +T + RG AYV F D A+ +
Sbjct: 13 FVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
Query: 454 KQMFLGKKLSIA-----RSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSK 508
++ G+++ I R P Q K G + S S E +
Sbjct: 73 RKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER-----R 127
Query: 509 QSRGRGDSVQLKGKNTFAVPRNVRPLGFP 537
+SR R S + +++ PRN RP G P
Sbjct: 128 RSRSR--SFDYNYRRSYS-PRNSRPTGRP 153
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 118 (46.6 bits), Expect = 0.00055, P = 0.00055
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 371 QPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTG 430
+PK+ + + G T + F+ + + +R +F G + I I+ DK TG
Sbjct: 102 EPKRAVPRQDIDSPNAGATVK-KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETG 160
Query: 431 KSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSG 477
K RG A+V+F D + + V + + GK + + ++ PKQ G
Sbjct: 161 KKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGG 207
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 122 (48.0 bits), Expect = 0.00056, P = 0.00056
Identities = 43/185 (23%), Positives = 79/185 (42%)
Query: 295 ESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQN 354
++KS E D++E + E D + E+ + ++ + + ++E+ V+
Sbjct: 232 KAKSTAEDEDEEEDEEDEEDEEDDDEDED---EEEDEEEEEDEEDEDEDEEEEEEEPVKE 288
Query: 355 LAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSD 414
+ + KQ + KKQ ++ P T F F+ N+N + +L+ SD
Sbjct: 289 APGKRKKEMAKQKAAPEAKKQKVEATEP--TTSFN----LFVGNLNFSKSASELKTGISD 342
Query: 415 VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKD 474
V + + ++ D G SR YVDF E L A+ G ++ + + PK KD
Sbjct: 343 VFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK--PKG-KD 398
Query: 475 SSGER 479
S +R
Sbjct: 399 SKKDR 403
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 45/161 (27%), Positives = 76/161 (47%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE--HLAAAV 450
T ++SNI T D+ + S G V + I+ DK T S+G+A+V F+D E + +
Sbjct: 11 TVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRS 70
Query: 451 AKNKQMFLGK--KLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAG-TSASKESSIETS 507
NKQ+F G+ K SIA N + + +R T++++ ++ G G S + ++
Sbjct: 71 LNNKQLF-GRMVKASIAIDNGRAA-EFIRKRNYTDKSKCYE-CGEEGHLSYACPKNLLGE 127
Query: 508 KQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGED 548
++ + + K K P V P + EEGED
Sbjct: 128 REPPPKKEK---KKKKKVQQPEEVEP------EDSEEEGED 159
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 116 (45.9 bits), Expect = 0.00060, P = 0.00060
Identities = 31/104 (29%), Positives = 50/104 (48%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ FL NI T E ++ S G V+ R++ + TGK +G + DF D + A+AV
Sbjct: 9 SVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRN 68
Query: 453 -NKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAG 495
N +G+K+ + + + KDS P + +Q Q G G
Sbjct: 69 LNDYEIMGRKIRVDWPHNNE-KDS----VPEDYSQPSQMPGQDG 107
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 118 (46.6 bits), Expect = 0.00060, P = 0.00060
Identities = 45/226 (19%), Positives = 95/226 (42%)
Query: 285 EELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKV 344
EE + +S+++SK E +++E S + K+ +S +++S + ++ KP V
Sbjct: 46 EEEKPEKSKKKSKKY-EEVEEEEKSPSPSPSPKKSKESKKKHKRSSDESEEIVDSKPVTV 104
Query: 345 ----------HDKEKRQVQNLAEENEGRETKQTVEEQPKK-QPIKDAVPGRTKGFTDECT 393
+ +K ++NL E E + + +K + AV + +
Sbjct: 105 PIVTIESDSDFEFDKEDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRN 164
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
F+ + T+E+L+ F G ++ ++ DK TG+++G +V F + AA+
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSH-QQTGNAGTSA 498
++ + +S + P ++ P E + TGN A
Sbjct: 225 EKRMYNRTVSCLPARPFNSGKPREQQQPVESVKIDLSHTGNQSEMA 270
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 116 (45.9 bits), Expect = 0.00060, P = 0.00060
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 361 GRE--TKQTVEEQP--KKQP-IKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDV 415
GRE + +V+ P ++ P + ++ P + + + ++ N+ + LR FS
Sbjct: 177 GREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKF 236
Query: 416 GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
G + S R+LHD+ TG++R A++ F E AA++ N + G+++ +
Sbjct: 237 GTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIV 285
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 96 (38.9 bits), Expect = 0.00062, P = 0.00062
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + E L++ FS G ++ ++ DK T +SRG +V F + + A+
Sbjct: 6 FVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEAEN 65
Query: 455 QMFLGKKLSIARSNPKQRKDSSGERAPTE 483
+M G+KL ++ + Q K + ++ PT+
Sbjct: 66 EMG-GRKLVVSFA---QEKTENNQQKPTD 90
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 116 (45.9 bits), Expect = 0.00065, P = 0.00065
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
F+ NI + E + FS G V + R+++D+ TGK +G + ++ D++ A+AV N
Sbjct: 11 FVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNLN 70
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGERAP 481
+G+KL + SN K + + P
Sbjct: 71 DTEIMGRKLRVDFSNEKPSTNDPDDGPP 98
>UNIPROTKB|G4N3R6 [details] [associations]
symbol:MGG_16710 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CM001233 InterPro:IPR021487 Pfam:PF11338 RefSeq:XP_003711697.1
EnsemblFungi:MGG_16710T0 GeneID:12984188 KEGG:mgr:MGG_16710
Uniprot:G4N3R6
Length = 389
Score = 109 (43.4 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 36/162 (22%), Positives = 74/162 (45%)
Query: 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELR 288
+++H+ + S KR ++ G + L+ + Y +L+++ H + K T
Sbjct: 76 QVEHMRKVVSYCKRHLAQESKGNSEKS--EEELKKTKSYASLKNWGHDILKATQGKSSAN 133
Query: 289 LFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKE 348
+ + +++D+K+ S G+ K KS S Q+P KRQ + K + +++E
Sbjct: 134 --GNSDSTDENEDASDEKKGSASN-GKSKSKSPS-----QTP-KRQTRSAAKDAEANEEE 184
Query: 349 KRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTD 390
+ + + AEE E E K+ E++ + A G+ + D
Sbjct: 185 EEESKENAEEEEDEEYKEEDEDEAGDEDESTAKSGQKRKAAD 226
Score = 52 (23.4 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 470 KQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIE-TSKQSRGRGDSVQLK-GKN 523
+Q D GE EQ + A ESS + +K +GD+V K G N
Sbjct: 282 EQASDKDGETEAGEQEDKEEPEEEEEEEAEDESSGKGDAKNGPSKGDTVSWKWGNN 337
>WB|WBGene00021913 [details] [associations]
symbol:cec-8 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000953
PROSITE:PS50013 SMART:SM00298 Pfam:PF00385 GO:GO:0005634
GO:GO:0009792 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR023780
GeneTree:ENSGT00690000102102 EMBL:FO081109 RefSeq:NP_497198.1
ProteinModelPortal:Q95XW8 SMR:Q95XW8 DIP:DIP-25228N IntAct:Q95XW8
MINT:MINT-1109877 STRING:Q95XW8 PaxDb:Q95XW8
EnsemblMetazoa:Y55B1BR.3 GeneID:175202 KEGG:cel:CELE_Y55B1BR.3
UCSC:Y55B1BR.3 CTD:175202 WormBase:Y55B1BR.3 eggNOG:NOG255798
InParanoid:Q95XW8 OMA:PRANNEN NextBio:887184 Uniprot:Q95XW8
Length = 679
Score = 121 (47.7 bits), Expect = 0.00066, P = 0.00066
Identities = 74/305 (24%), Positives = 125/305 (40%)
Query: 271 EDFDHSVQKVTPRLEELRLFRSQQESKSLPESA-DQKEHSVKKTGREKR--KSDSNISYE 327
E D + R + R S +S S +S D+K+ K R KR SD + E
Sbjct: 196 ESEDEEEKSPRKRSSKKRRAASVSDSDSDSDSDFDKKKWKKNKAKRSKRDDSSDDDSEME 255
Query: 328 QSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKG 387
+ K +K K K +K KR V + + ++E E K E++ KK K AV +
Sbjct: 256 RRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDEDEEEKP--EKRSKKS--KKAVIDSSSE 311
Query: 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKS-RGLAYVDFIDDEHL 446
+E + D + SD S ++ K KS + + +E
Sbjct: 312 DEEEEKSSKKRSKKSKKESDEEQQASD----SEEEVVEVKKNSKSPKKTPKKTAVKEESE 367
Query: 447 AAAVAKNKQMFLGKKLSIARSNPKQRKDSSG------ERAPTEQAQSHQQTGNAGTSASK 500
++ + +++ KK S + N ++ K+SS E +P ++ +S +++ SA+K
Sbjct: 368 ESSGDEEEEVVKKKKSS--KINKRKAKESSSDEEEEVEESPKKKTKSPRKSSKK--SAAK 423
Query: 501 ESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAIKPKTEEGEDLKPKSNDEFRKM 560
E S E S + + V K P+ PA K ++EE D + +E +
Sbjct: 424 EESEEESSDNEEE-EEVDYSPKKKVKSPKKSSKK--PAAKVESEEPSD-NEEEEEEVEES 479
Query: 561 FIKKD 565
IKKD
Sbjct: 480 PIKKD 484
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 118 (46.6 bits), Expect = 0.00068, P = 0.00068
Identities = 30/124 (24%), Positives = 59/124 (47%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+ + T E+ R++F G V+ + I++D+ T + RG +V F ++ + + + K
Sbjct: 113 FVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTF 172
Query: 455 QMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSK----QS 510
GK++ + R+ PK G R+ Q G G +S + +++++ QS
Sbjct: 173 HDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQ-GYGGNESSYDGRMDSNRFLQHQS 231
Query: 511 RGRG 514
G G
Sbjct: 232 VGNG 235
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 116 (45.9 bits), Expect = 0.00073, P = 0.00073
Identities = 49/195 (25%), Positives = 82/195 (42%)
Query: 368 VEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK 427
+ E+ + + D V ++ + D FL + + T D+ FS G + +I ++ DK
Sbjct: 13 LNEREVQLGVADKVSWHSE-YKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDK 71
Query: 428 FTGKSRGLAYVDFIDDEHLAAAVAK-NKQMFLGKKLSIAR-SNPKQRKDSSGERAPTEQA 485
TGKS+G ++ + D AV N G+ + + SN + KDS T Q
Sbjct: 72 KTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQL 131
Query: 486 QSH---QQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKNTFAVPRNVRPLGFPAIKP- 541
Q +T + S S E T K + + + + K K R V+ + P
Sbjct: 132 QEKGCGARTPSPSLSESSEDEKPTKKHKKDKKEKKKKK-KEKEKADREVQAEQPSSSSPR 190
Query: 542 -KT-EEGEDLKPKSN 554
KT +E +D PK +
Sbjct: 191 RKTVKEKDDTGPKKH 205
>DICTYBASE|DDB_G0295683 [details] [associations]
symbol:DDB_G0295683 "cofilin/tropomyosin type actin
binding domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003779 "actin
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 InterPro:IPR002108 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS51263 SMART:SM00132
dictyBase:DDB_G0295683 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
Gene3D:2.10.110.10 InterPro:IPR013326 SUPFAM:SSF47162
EMBL:AAFI02000193 RefSeq:XP_001733061.1 ProteinModelPortal:B0G198
EnsemblProtists:DDB0238576 GeneID:8628738 KEGG:ddi:DDB_G0295683
OMA:SVQTNSQ Uniprot:B0G198
Length = 1589
Score = 119 (46.9 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 31/115 (26%), Positives = 58/115 (50%)
Query: 264 EREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSN 323
ERE + D +Q + +E+ R + QQ+ K E +++E K+ EK K D
Sbjct: 689 ERERNEKLEKDRQLQ-LEQEIEKERKLKQQQKEKEQKEQKEKREQREKEEKEEKDKKDKE 747
Query: 324 ISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIK 378
+Q K+Q+ Q+ +K +K++R+ + EE E E ++ E + K++ +K
Sbjct: 748 EKEKQELKKKQQQQQQQKEK--EKQERKEKEEREEREKEEREEREEREEKERELK 800
Score = 56 (24.8 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 23/102 (22%), Positives = 48/102 (47%)
Query: 464 IARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQSRGRGDSVQLKGKN 523
+ + Q+ DS + E+ +S ++ E +E+SK S + + + K
Sbjct: 884 VKKQQQTQKDDSDDSSSEDEKPKSVV----VASTKKPEPIVESSKPSFVK----KQQNKQ 935
Query: 524 TFAVPRNVRPLGFPAIKPKTE--EGEDLK-PKSNDEFRKMFI 562
P V+P+ +I+PK++ E D++ SN E R++++
Sbjct: 936 PEPEPEEVKPIVKKSIQPKSDLQENPDVECDLSNPELRQIWL 977
Score = 44 (20.5 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYER 48
LE + Q + +SEK +Q + L+ +Q ++Q +E+
Sbjct: 558 LEREREIQSILESEKQRQQQVELEIQQEKERTKQLQQQWEQ 598
>UNIPROTKB|G3V2S9 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008044 HGNC:HGNC:20495 ChiTaRS:SLIRP
EMBL:AC008372 ProteinModelPortal:G3V2S9 SMR:G3V2S9
Ensembl:ENST00000557431 ArrayExpress:G3V2S9 Bgee:G3V2S9
Uniprot:G3V2S9
Length = 124
Score = 95 (38.5 bits), Expect = 0.00080, P = 0.00080
Identities = 30/98 (30%), Positives = 42/98 (42%)
Query: 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453
AF+ I A L+ F+ G V + DK TG RGL +V F +E L A+ +
Sbjct: 21 AFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQE 80
Query: 454 KQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQT 491
+ G K S+ R K GER P + Q+
Sbjct: 81 NHIIDGVKESLFRDTQWTAK---GERPPQANGRKAAQS 115
WARNING: HSPs involving 14 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 565 550 0.00097 119 3 11 23 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 264
No. of states in DFA: 616 (65 KB)
Total size of DFA: 309 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.90u 0.09s 68.99t Elapsed: 00:00:04
Total cpu time: 68.94u 0.09s 69.03t Elapsed: 00:00:04
Start: Thu May 9 16:10:42 2013 End: Thu May 9 16:10:46 2013
WARNINGS ISSUED: 2