BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008442
(565 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/479 (27%), Positives = 229/479 (47%), Gaps = 36/479 (7%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 305 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 364
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW R LL++ER + IS FEK+L F +Y++++
Sbjct: 365 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 424
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM-----KNTDGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL +++ ++ D + WA +E
Sbjct: 425 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 482
Query: 193 QSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + + T
Sbjct: 483 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHR--AVQCTSD 540
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSL---PESADQ 305
E +C L ER G+LED+D +VQK RL E R+ +++E+ + E A+Q
Sbjct: 541 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 600
Query: 306 KEHSVKKT----------GREKRKSDSNISY------EQSPAKRQKHAPQKPKKVHDKEK 349
++ + + G EKR +D + E+ P+KR++ P +
Sbjct: 601 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV 660
Query: 350 RQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFT-DECTAFLSNINLKATYED- 407
A + + + +++ K +K +P + D T F+SN+ D
Sbjct: 661 EVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDT 720
Query: 408 -LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
LR F G V IR + G RG YV+F +++ A+ +++ G+ + ++
Sbjct: 721 KLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVS 778
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 804 FISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 862
Query: 455 QMFLGKK-LSIARSNPKQRK 473
M + + + +A SNP QRK
Sbjct: 863 GMTIKENIIKVAISNPPQRK 882
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/479 (27%), Positives = 229/479 (47%), Gaps = 36/479 (7%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 323 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 382
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137
V++RA +NCPW LW R LL++ER + IS FEK+L F +Y++++
Sbjct: 383 LSVHNRAIRNCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAY 442
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM-----KNTDGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL +++ ++ D + WA +E
Sbjct: 443 LDYLRRRVDFKQDSSKELEE--LRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIE 500
Query: 193 QSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + + T
Sbjct: 501 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHR--AVQCTSD 558
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSL---PESADQ 305
E +C L ER G+LED+D +VQK RL E R+ +++E+ + E A+Q
Sbjct: 559 YPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQ 618
Query: 306 KEHSVKKT----------GREKRKSDSNISY------EQSPAKRQKHAPQKPKKVHDKEK 349
++ + + G EKR +D + E+ P+KR++ P +
Sbjct: 619 RKRARAEKKALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENSIPAAGETQNV 678
Query: 350 RQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFT-DECTAFLSNINLKATYED- 407
A + + + +++ K +K +P + D T F+SN+ D
Sbjct: 679 EVAPGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDA 738
Query: 408 -LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465
LR F G V IR + G RG YV+F +++ A+ +++ G+ + ++
Sbjct: 739 KLRPLFEACGEVVQIRPIFSN-RGDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVS 796
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 822 FISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 880
Query: 455 QMFLGKK-LSIARSNPKQRK 473
M + + + +A SNP QRK
Sbjct: 881 GMTIKENVIKVAISNPPQRK 900
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 132/484 (27%), Positives = 226/484 (46%), Gaps = 47/484 (9%)
Query: 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVV 77
+++ + +Y Y+ +E GDP R+QL++ERA+ + + DLW+ Y+QYLD+ LKV ++V
Sbjct: 306 AEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLV 365
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137
V+SRA +NCPW LW R LL++ER + IS FE +L F +Y++++
Sbjct: 366 LSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQTISATFENALSAGFIQATDYVEIWQVY 425
Query: 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM-----KNTDGLLRLYAYWAHLE 192
+D LRRR+ F + L+ +R F RA +YL +++ ++ D + WA +E
Sbjct: 426 LDYLRRRVDFRQDSSKELEE--LRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVE 483
Query: 193 QSMGKDMVSARGVWERLLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251
+ +M AR +W+ ++ A W Y ++E R R + + T
Sbjct: 484 ARLCNNMQKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHR--AVQCTSD 541
Query: 252 GSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL---EELRLFRSQQESKSLPESADQKEH 308
E +C L ER GTLED+D ++QK RL E R+ +++E+ +L + ++K
Sbjct: 542 YPEHVCEVLLTMERTEGTLEDWDLAIQKTETRLARVNEQRMKAAEKEA-ALVQQEEEKAE 600
Query: 309 SVKKTGREK---------RKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEEN 359
KK EK R +D E + + ++P K +R+ +N
Sbjct: 601 QRKKVRAEKKALKKKKKTRGADKRREDEDEENEWGEEEEEQPSK-----RRRTENSLASG 655
Query: 360 EGRETKQTVEEQPKKQPIKDAVPGRTK----------------GFTDECTAFLSNI--NL 401
E K+ E K I P + K D T F+SN+ ++
Sbjct: 656 EASAMKEETELSGKCLTIDVGPPSKQKEKAASLKRDMPKVAHDSSKDSVTVFVSNLPYSI 715
Query: 402 KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKK 461
+ LR F G V IR + G RG YV+F +++ A+ ++++ G+
Sbjct: 716 EEPEVKLRPLFEVCGEVVQIRPIFSN-RGDFRGYCYVEFGEEKSAQQALELDRKIVEGRP 774
Query: 462 LSIA 465
+ ++
Sbjct: 775 MFVS 778
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+S + T E+L G V +R++ ++ GK +GLAYV++ ++ + AV K
Sbjct: 804 FISGLPFSCTKEELEDICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 862
Query: 455 QMFLGKK-LSIARSNPKQRK---DSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQS 510
M + + + +A SNP QRK AP Q G G ++ S + + Q
Sbjct: 863 GMTIRENVIKVAISNPPQRKVPEKPEVRTAPGAPMLPRQMYGARGKGRTQLSLLPRALQR 922
Query: 511 RGRGDSVQLKGKNTFAVPRNVR-PLGFPAIKPKTEEGEDLKPKSNDEFRKMFIKK 564
+G A P+ P PA+ P + SN +F K+ ++K
Sbjct: 923 QG-------------AAPQAENGPAPGPAVAPSV--ATEAPKMSNADFAKLLLRK 962
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/524 (21%), Positives = 208/524 (39%), Gaps = 88/524 (16%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
+ HL+E D S+ K Y + ++ ++ER++ FP+ LWL Y
Sbjct: 321 KQHLDETTRGWDWSEQHKAHVYDVETLSLDDDLKNAVIRFIFERSVAKFPIVDVLWLSYI 380
Query: 65 QYLD------------------------KTLKVG---NVVRDVYSRATKNCPWVGELWVR 97
+++ K L G N D+ +R ++ P V +L R
Sbjct: 381 EFIQFEGVTVPENEDENEVTAEMVAKRAKRLGKGFLRNTELDLANRGVRSHPSV-QLNHR 439
Query: 98 SLLSLERS----RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153
L +ERS +EEI + ++ + T E +LD RI R S E +
Sbjct: 440 FLDLMERSDFELAEVDEEIRLILQRIVTDMDMTVELHLDYLAYRI----RNTNASDEQQ- 494
Query: 154 VLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212
+ +R F A + L+ + D + WA +E + + R +W +++
Sbjct: 495 ---VASLRAAFNHAWEELTVLYGDQADTRYEVLQLWAQVEYTQLGSPDNGREIWRQIMGY 551
Query: 213 SGAMLEA--WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270
G+ + W ++ ME E + + R + ++ S+ G + + R+ER YGT
Sbjct: 552 PGSSIRGLLWLNFAQMESEYNGGHGTRDVLRKALSQPVLENGLM-VQEFFRRYERCYGTY 610
Query: 271 EDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDSNISYEQSP 330
ES + ++ D VK R K S S +Q
Sbjct: 611 ------------------------ESIAACQALDLPVEYVKPRSRIKPNSQSAYPRQQKL 646
Query: 331 AKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAV--PGRTKGF 388
RQ+ + ++ +++R+ + ++ + ++ K +++ + +P A P + KG
Sbjct: 647 KPRQQQQQTNREPLNREQRRRQAHEQQQQQQQQQKHGIKKS-RTEPSGGATSPPSKVKGP 705
Query: 389 TDE---------------CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
+ F+ N++ + E+L FS G + +R++H K + +
Sbjct: 706 ANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVH-KLNKQFK 764
Query: 434 GLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPKQRKDSS 476
G+AYV+F AVA ++ +F G +S+A SNP R S+
Sbjct: 765 GIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVAISNPPPRGTSA 808
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 181/458 (39%), Gaps = 73/458 (15%)
Query: 18 SDSEKFQQYMIYLKYE--QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGN 75
S + + YM + E +S+ + + LYERAI +P+ +LWL YT +L K +
Sbjct: 265 SANHSLEAYMDLINDESRRSTAELQYITTLYERAIVLYPLIPELWLQYTAWLSKVDFSSS 324
Query: 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYL 131
V RAT+NC W+G +W L + S AS S V E+ C S F+E +
Sbjct: 325 QASSVAERATRNCSWIGRIWSIKLTYMTLSGAS---TSAVCEEKDRCLNSNLLVNFDEVI 381
Query: 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAH 190
D F G + L+ E ++ + DYL + K + D +R+ +
Sbjct: 382 DFF----SGFLKACLYLSSNEDK-PQEFLKHQIHKVEDYLRKNHKGSKDARMRIELSKIY 436
Query: 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQS-YISM---EIELDHINEARSIYKRCYSK 246
L + D S W + W S YIS EL +S+YK
Sbjct: 437 LYSEIS-DFESVEKCWSDMFHDFQNQALYWISRYISTMKYNPELAAETLKKSLYK----- 490
Query: 247 RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQK 306
++ L F+ Y ++ D ++ T L ++ + + L A++
Sbjct: 491 --------NVDQPQLLFQF-YQSIMDLNNDCFTNTSHLYDVLNAQRISFKRQLDSFAEET 541
Query: 307 EHSVKKTGREKRKSDSNISYEQSPAKRQKHAPQKPKKVHDKEKRQVQNLAEENEGRETKQ 366
+ +V+ T +P KV Q + A ++ R+ Q
Sbjct: 542 KQTVENT--------------------------EPLKV-----PQADDTAALSKKRKPGQ 570
Query: 367 TVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426
+ K +PI+ R + +E T ++N+ + +L+ FF D G + I IL D
Sbjct: 571 EGDVFKKSKPIEQ---HRNR---EELTVLVTNLPSDISENELKIFFKDCGNIIRIFILED 624
Query: 427 KFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
K +A ++F + + AA ++ + G ++S+
Sbjct: 625 --NQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISV 660
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
+++NI+ K +D+ FF D G V S+RI K + +G YV ++ A++
Sbjct: 760 YVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKGFGYVVMTTNQDAENALSAAG 817
Query: 455 QMFLGKKLSIARSNP-----KQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSKQ 509
+ + L++ S P K R S+ R A+S + T + S K+S + +
Sbjct: 818 KQLGNRVLNVVLSKPRESLEKTRVSSNDNRT---LAKSFETTESNKMSTPKKSFEQIKSK 874
Query: 510 SRG 512
S G
Sbjct: 875 SLG 877
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D + ++ N++ AT E+L F G V+ + IL DKFTG +G AY++F D E + +
Sbjct: 161 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTS 220
Query: 450 VAKNKQMFLGKKLSI 464
+A ++ +F G+++ +
Sbjct: 221 LALDESLFRGRQIKV 235
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 126/284 (44%), Gaps = 46/284 (16%)
Query: 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYT 64
R+ E+++ R L+ S ++ Y +E S G+ R + +YERA+ P LWL YT
Sbjct: 56 RSEFEDRLRRNGLNMS----TWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYT 111
Query: 65 QYLDKTLKVGNV--VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122
+ + LK+ NV R++Y RA P + +LW + + LE + VFE+ +
Sbjct: 112 E---QELKMRNVQHARNLYDRAVSILPRIDQLWYK-YVHLEELLGNIPGTRQVFERWMKW 167
Query: 123 AFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180
+ Y++L + R D L R + + E+
Sbjct: 168 EPEEKAWHAYINLEV-RYDELDR------------------------ASAIWERCVTCHP 202
Query: 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----AMLEA---WQSYISMEIELDHI 233
+ + + WA E+ G ++ AR V++ L G AM +A + ++ ME L
Sbjct: 203 VPKQWIRWAKFEEDRG-NLEKARIVFQMALDYIGEDEDAMEKAQSVFTAFAKMETRLKEY 261
Query: 234 NEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277
AR IYK +R + SE I ++ RFE+++GT+ + +V
Sbjct: 262 ERARVIYKYAL-ERLPRSKSEGIYSSYTRFEKQFGTMNSVEDTV 304
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWE 207
S V+ + DY + E R ++++ + + +A E S G +M R ++E
Sbjct: 36 SAPVQKIEDYEELEEYRGRRRSEFEDRLRRNGLNMSTWIKYASWEASQG-EMDRCRSIYE 94
Query: 208 RLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245
R L + L W Y E+++ ++ AR++Y R S
Sbjct: 95 RALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVS 132
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + ++ N++ +T +DL FS G ++ I IL DKF+G +G AY++F + + AA
Sbjct: 91 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA 150
Query: 450 VAKNKQMFLGKKLSI 464
VA ++ +F G+ + +
Sbjct: 151 VAMDETVFRGRTIKV 165
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D + ++ N++ AT E+L F G V+ + IL DKFTG +G AY++F D E + +
Sbjct: 160 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTS 219
Query: 450 VAKNKQMFLGKKLSI 464
+A ++ +F G+++ +
Sbjct: 220 LALDESLFRGRQIKV 234
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + ++ N++ T +DL FS G ++ I IL DKF+G +G AY++F + + AA
Sbjct: 91 DKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA 150
Query: 450 VAKNKQMFLGKKLSI 464
V ++ +F G+ + +
Sbjct: 151 VTMDETVFRGRTIKV 165
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D + ++ N++ AT E+L F G V+ + IL DK+TG +G AY++F D E + +
Sbjct: 161 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTS 220
Query: 450 VAKNKQMFLGKKLSI 464
+A ++ +F G+++ +
Sbjct: 221 LALDESLFRGRQIKV 235
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
D + ++ N++ AT E+L F G V+ + IL DKF+G +G AY++F D E +
Sbjct: 169 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRT 228
Query: 449 AVAKNKQMFLGKKLSI 464
++A ++ +F G+++ +
Sbjct: 229 SLALDESLFRGRQIKV 244
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 352 VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRF 411
VQ AEE EG Q + + P+ + + D + ++ N++ + E+L
Sbjct: 109 VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVE--ADHRSVYVGNVDYGGSAEELEAH 166
Query: 412 FSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464
FS G V + IL DKF+G +G AY++F + AAV ++ +F G+ + +
Sbjct: 167 FSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKV 219
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
D + ++ N++ AT E+L F G V+ + IL DKF+G +G AY++F D E +
Sbjct: 169 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRT 228
Query: 449 AVAKNKQMFLGKKLSI 464
++A ++ +F G+++ +
Sbjct: 229 SLALDESLFRGRQIKV 244
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
D + ++ N++ AT E+L F G V+ + IL DKF+G +G AY++F D E +
Sbjct: 165 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRT 224
Query: 449 AVAKNKQMFLGKKLSI 464
++A ++ +F G+++ +
Sbjct: 225 SLALDESLFRGRQIKV 240
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
+ ++ N++ K+T++ + +F G V+ I IL DK TG +G YV+F++ E + A+A
Sbjct: 102 SVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMAL 161
Query: 453 NKQMFLGKKLSIA 465
N F ++L I
Sbjct: 162 NDSFFNERQLKIT 174
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA-VAKN 453
FL NI AT ED ++ FS G + + + D TG+S+G AYV F D EH A A + +
Sbjct: 304 FLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELD 363
Query: 454 KQMFLGKKLSIARSNPKQ 471
KQ+F G+ L I ++ K+
Sbjct: 364 KQIFQGRLLHILPADAKK 381
>sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1
Length = 388
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452
TA + N++ T DL FF + GV+SIR++ D T +SRG YV+F + L+AA+A
Sbjct: 95 TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALAL 152
Query: 453 NKQMFLGKKLSIARSNPKQ 471
+ + +G+ + I + P++
Sbjct: 153 SGEDLMGRPVRITVAEPRR 171
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 22/119 (18%)
Query: 357 EENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTA----------FLSNINLKATYE 406
E+NE +TK+ EEQP++ AVP +T DE A FL NI + E
Sbjct: 311 EQNESLDTKK--EEQPER-----AVPQKT----DEELAIEKINQTGRLFLRNILYTSKEE 359
Query: 407 DLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEH-LAAAVAKNKQMFLGKKLSI 464
D R+ FS G + + + D TG+S+G AYV F D ++ + A V +KQ+F G+ L I
Sbjct: 360 DFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHI 418
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 384 RTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFI 441
+TK + N+ +AT +D+ F+ G + S+R+ KF +RG A+V+F+
Sbjct: 755 KTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPK-KFDKSARGFAFVEFL 811
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%)
Query: 374 KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
K P+++ + T D T F + + DL FFS VG V +R++ D+ + +S+
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 434 GLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSS 476
G+AYV+F+D + A+ Q LG + + S ++ + ++
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAA 237
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
KG ++ +++ T + LR F G + SI+++ D TG+S+G ++ F D E
Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%)
Query: 374 KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
K P+++ + T D T F + + DL FFS VG V +R++ D+ + +S+
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 434 GLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSS 476
G+AYV+F+D + A+ Q LG + + S ++ + ++
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAA 237
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
KG ++ +++ T + LR F G + SI+++ D TG+S+G ++ F D E
Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%)
Query: 374 KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
K P+++ + T D T F + + DL FFS VG V +R++ D+ + +S+
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 434 GLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSS 476
G+AYV+F+D + A+ Q LG + + S ++ + ++
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAA 237
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
KG ++ +++ T + LR F G + SI+++ D TG+S+G ++ F D E
Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
D + F+ N++ + +L +FS G + + IL DKF+G +G AY++F + A
Sbjct: 140 ADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKA 199
Query: 449 AVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGT----SASKESSI 504
AV ++ F G+ + + PK R + G + T++ +GN S +++ +
Sbjct: 200 AVGLDESTFRGRVIKVL---PK-RTNFPGISS-TDRGGLRTHSGNRAAFLHGSLHRKARL 254
Query: 505 ETSKQSRGRGDSVQ 518
+SRG G + Q
Sbjct: 255 RAHGRSRGHGGAPQ 268
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451
C F+ +N T ++LR +F G V+ ++I+ D TG+SRG ++ F + V
Sbjct: 159 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF-EKPSSVDEVV 217
Query: 452 KNKQMFLGKKLSIARSNPKQRKDSSGE 478
K + + GK + R+ P+ +D +G+
Sbjct: 218 KTQHILDGKVIDPKRAIPRDEQDKTGK 244
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK 454
F+ I ++ FFS G + +++ DK TG+SRG +V + D V +NK
Sbjct: 246 FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVDRVCQNK 304
Query: 455 QM-FLGKKLSIARSNPKQRKDSS 476
+ F +K+ I R+ P+ + S
Sbjct: 305 FIDFKDRKIEIKRAEPRHMQQKS 327
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + F+ N+ K + + F D G + ++RI+ DK TG +G YV F + + + A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344
Query: 450 VAKNKQMFLGKKLSIARSNPKQR 472
+ N +G+KL + RS K++
Sbjct: 345 LKLNNSELMGRKLRVMRSVNKEK 367
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
D + ++ N++ + +L +FS G + + IL DKF+G +G AY++F + A
Sbjct: 136 ADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQA 195
Query: 449 AVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTGNAGTSASKESSIETSK 508
AV ++ F G+ + + SS +R S + G S ++ +
Sbjct: 196 AVRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAAFLQG-SLQRKPRLRPHG 254
Query: 509 QSRGRG 514
QSRGRG
Sbjct: 255 QSRGRG 260
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D T F+S + + T +L FF G V +I+ DK +G+S+G+AYV+F ++ + AA
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 450 VAKNKQMFLG 459
+A + + LG
Sbjct: 298 IALSGKRLLG 307
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA-VAKN 453
FL NI AT +D R+ FS G + + I D TG+S+G AYV F + ++ A A V +
Sbjct: 333 FLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELD 392
Query: 454 KQMFLGKKLSIARSNPKQ 471
KQ+F G+ L I ++ K+
Sbjct: 393 KQIFQGRLLHILPADAKK 410
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV- 450
++ NI+ T E+ R F G ++S + D +GKSRG +V+F ++ AAAV
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 451 AKNKQMFLGKKLSIARSNPKQRKD 474
A N + F G+KL + R+ K ++
Sbjct: 296 ALNDKDFKGQKLYVGRAQKKHERE 319
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF 440
+ ++ ++ T L FS +G V+SIR+ D T +S G AYV++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 103
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE-HLAAAVA 451
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E L+A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 452 KNKQMFLGKKLSI 464
N + F G+ L +
Sbjct: 77 LNGREFSGRALRV 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE-HLAAAVA 451
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E L+A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 452 KNKQMFLGKKLSI 464
N + F G+ L +
Sbjct: 77 LNGREFSGRALRV 89
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-- 450
T ++SN+ T DL R FS G V + IL DK + KS+G+++V F+D E V
Sbjct: 11 TVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVRG 70
Query: 451 AKNKQMF-LGKKLSIARSN 468
NKQ+F K SIA+ N
Sbjct: 71 LNNKQLFGRAIKASIAKDN 89
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 352 VQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRF 411
V + E NE E Q + +P+ P + + + F+ NI+ +A+ ED R
Sbjct: 274 VPEVKEVNEVTEVTQQSDNEPELTPEEQIA----QKIEETGRLFIRNISYEASEEDFRSL 329
Query: 412 FSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKNKQMFLGKKLSIARSNPK 470
FS G + + I D TGKS+G YV F+ E A + +KQ+F G+ L I ++ K
Sbjct: 330 FSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKK 389
Query: 471 Q 471
+
Sbjct: 390 K 390
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE-HLAAAVA 451
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E L+A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 452 KNKQMFLGKKLSI 464
N + F G+ L +
Sbjct: 77 LNGREFSGRALRV 89
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE-HLAAAVA 451
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E L+A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 452 KNKQMFLGKKLSI 464
N + F G+ L +
Sbjct: 77 LNGREFSGRALRV 89
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 373 KKQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
+K P+++ V + D T F + + DL FFS VG V +RI+ D+ + +S
Sbjct: 147 EKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRS 206
Query: 433 RGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQRKDSSGERAPTEQAQSHQQTG 492
+G+AYV+F + + + A+ Q LG + + + S E+ ++ Q G
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIV--------QASQAEKNRLAAMANNLQKG 258
Query: 493 NAG 495
N G
Sbjct: 259 NGG 261
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE 444
KG ++ +++ T + LR F G + +I ++ D TG+S+G ++ F D E
Sbjct: 257 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAA 448
T C F+ N+ +A E L R+F D G + +RI+ D T +G AY+ F D +
Sbjct: 268 TKRCV-FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
Query: 449 AVAKN-KQMFLGKKLSIAR---SNPKQ--RKDSSGERAPTEQAQSHQQTGNAGTS 497
A+ N K+M G+ L I R + PK R E+ T Q ++ + G AG +
Sbjct: 327 ALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARKLIGKAGNA 381
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE-HLAAAVA 451
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E L+A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 452 KNKQMFLGKKLSI 464
N + F G+ L +
Sbjct: 77 LNGREFSGRALRV 89
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDE-HLAAAVA 451
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +G + ++ D E L+A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 452 KNKQMFLGKKLSI 464
N + F G+ L +
Sbjct: 77 LNGREFSGRALRV 89
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 45/274 (16%)
Query: 31 KYEQSSGDPGRVQLL---YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87
+ E++ DPGR ++R + P SS LWL Y + + ++ R V RA K
Sbjct: 1581 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKA-RAVAERALKT 1639
Query: 88 CPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--- 139
+ E +WV +LL+LE S+E ++ VFE+++ + E L +FL D
Sbjct: 1640 ISFREEQEKLNVWV-ALLNLENMYGSQESLTKVFERAV-----QYNEPLKVFLHLADIYT 1693
Query: 140 ---------GLRRRIL------------FSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178
L R+L + V G QRA + L + ++
Sbjct: 1694 KSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAK-EHV 1752
Query: 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238
D +++ +A LE +G D+ A+ ++E L + W YI M I+ R
Sbjct: 1753 DVIVK----FAQLEFQLG-DVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRD 1807
Query: 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272
I++R + +L +E+++GT +D
Sbjct: 1808 IFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKD 1841
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D + ++ N++ T E+L+ F+ G V+ + IL DKFTG +G AY++F + + A
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 450 VAKNKQMFLGKKLSI 464
+ N M + L +
Sbjct: 113 LLLNGSMLHERPLKV 127
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ NIN + T ++ R F G V+S + D+ TGKSRG +V+F E + AV + N
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 454 KQMFLGKKLSIARSNPKQRKD 474
++ F G+ L + R+ K ++
Sbjct: 305 EKEFHGQNLYVGRAQKKHERE 325
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDF 440
+ ++ ++ T L FS +G V+SIR+ D T +S G AYV++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNY 109
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 60/278 (21%)
Query: 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQ--------LLYERAITDFPVSSDLWL 61
++IS+Q+ E F+ Y I+ E+ GD ++ YE + P + D W
Sbjct: 280 DRISKQEAQ--ELFKNYTIF---EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF 334
Query: 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---------LWVRSLLSLERSRASEEEI 112
DY + ++ + + VR+VY RA N P + E LWV L E E
Sbjct: 335 DYLRLVESDAE-ADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERT 393
Query: 113 STVFEKSLLC------AFSTFEEYLDLFLTRIDGL---RRRI-----------LFSGEVE 152
V++ SL F+ Y F R L RR + LF G +E
Sbjct: 394 RQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIE 453
Query: 153 GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209
L ++ R+ +++ ++ E N ++ A LE +G D+ AR ++E
Sbjct: 454 LELQLREFDRCRKLYEKFLEFGPE---NCTSWIKF----AELETILG-DIERARAIYE-- 503
Query: 210 LKISGAMLEA----WQSYISMEIELDHINEARSIYKRC 243
L IS L+ W+SYI EIE + R++Y++
Sbjct: 504 LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQL 541
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85
++ Y ++E+S + R + +YERA+ + LWL Y + K +V N R+++ RA
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV-NHARNIWDRAI 142
Query: 86 KNCPWVGELWVR 97
P V + W +
Sbjct: 143 TTLPRVNQFWYK 154
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243
YA W E+S+ K++ AR ++ER L + + W Y ME++ +N AR+I+ R
Sbjct: 87 YAQW---EESL-KEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 141
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--V 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GNV
Sbjct: 112 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNVAGA 168
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122
R V+ R + P + W S ++ E E T++E+ +L
Sbjct: 169 RQVFERWMEWQP-EEQAW-HSYINFELRYKEVERARTIYERFVLV 211
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 60/278 (21%)
Query: 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQ--------LLYERAITDFPVSSDLWL 61
++IS+Q+ E F+ Y I+ E+ GD ++ YE + P + D W
Sbjct: 280 DRISKQEAQ--ELFKNYTIF---EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF 334
Query: 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---------LWVRSLLSLERSRASEEEI 112
DY + ++ + + VR+VY RA N P + E LWV L E E
Sbjct: 335 DYLRLVESDAE-ADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERT 393
Query: 113 STVFEKSLLC------AFSTFEEYLDLFLTRIDGL---RRRI-----------LFSGEVE 152
V++ SL F+ Y F R L RR + LF G +E
Sbjct: 394 RQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIE 453
Query: 153 GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209
L ++ R+ +++ ++ E N ++ A LE +G D+ AR ++E
Sbjct: 454 LELQLREFDRCRKLYEKFLEFGPE---NCTSWIKF----AELETILG-DIERARAIYE-- 503
Query: 210 LKISGAMLEA----WQSYISMEIELDHINEARSIYKRC 243
L IS L+ W+SYI EIE + R++Y++
Sbjct: 504 LAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQL 541
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85
++ Y ++E+S + R + +YERA+ + LWL Y + K +V N R+++ RA
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV-NHARNIWDRAI 142
Query: 86 KNCPWVGELWVR 97
P V + W +
Sbjct: 143 TTLPRVNQFWYK 154
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 181 LLRLYAYW---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237
L R+ +W ++E+ +G ++ AR V+ER ++ +AW SYI+ E+ + AR
Sbjct: 145 LPRVNQFWYKYTYMEEMLG-NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVERAR 202
Query: 238 SIYKR 242
+IY+R
Sbjct: 203 TIYER 207
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243
YA W E+S+ K++ AR ++ER L + + W Y ME++ +N AR+I+ R
Sbjct: 87 YAQW---EESL-KEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRA 141
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 23 FQQYMIYLKY---EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV--V 77
++ ++LKY E + + +++RAIT P + W YT Y+++ L GNV
Sbjct: 112 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEML--GNVAGA 168
Query: 78 RDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122
R V+ R + P + W S ++ E E T++E+ +L
Sbjct: 169 RQVFERWMEWQP-EEQAW-HSYINFELRYKEVERARTIYERFVLV 211
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D D L A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 452 KNKQMFLGK--KLSIARSN 468
N + G+ K SIA N
Sbjct: 71 INNKQLFGRVIKASIAIDN 89
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA 451
T ++SN+ T DL R FS G V + I+ DK T KS+G+A++ F+D D L A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 452 KNKQMFLGK--KLSIARSN 468
N + G+ K SIA N
Sbjct: 71 INNKQLFGRVIKASIAIDN 89
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D+ + F+ N+ + L F D G + ++RI+ + TG RG YV F + + + A
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342
Query: 450 VAKNKQMFLGKKLSIAR-----------SNPKQRKDSSGERA----PTEQAQSHQQTGNA 494
+ N +G+KL + R SNP +KD S + +++ +SH +
Sbjct: 343 LKLNNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQRLNFTSKEGKSHSKNAFI 402
Query: 495 GTSA 498
G A
Sbjct: 403 GEKA 406
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAA 449
D + ++ N++ A+ E+L F G ++ + IL +K G +G AY++F E + A
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETA 153
Query: 450 VAKNKQMFLGKKLSI 464
+A N+ +F G+++ +
Sbjct: 154 LAMNETLFRGRQIKV 168
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451
T ++ N++ +AT DL+ F+D G V + + D+ TG+ RG A+V+ +D AA+
Sbjct: 1 MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAIT 60
Query: 452 K-NKQMFLGKKLSIARSNPKQ--RKDSSGER 479
+ + ++G++L + ++ P++ R+ S G++
Sbjct: 61 ELDGAEWMGRQLRVNKAKPREDDRRGSWGKK 91
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 395 FLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK-N 453
++ N+N+ T E+LR+ FS G ++S +++ D+ GKS+G +V F E AV +
Sbjct: 307 YVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 454 KQMFLGKKLSIARSNPKQ 471
QMF GK L +A + K+
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,166,557
Number of Sequences: 539616
Number of extensions: 8786628
Number of successful extensions: 34447
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 702
Number of HSP's that attempted gapping in prelim test: 30148
Number of HSP's gapped (non-prelim): 4091
length of query: 565
length of database: 191,569,459
effective HSP length: 123
effective length of query: 442
effective length of database: 125,196,691
effective search space: 55336937422
effective search space used: 55336937422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)