Query 008442
Match_columns 565
No_of_seqs 455 out of 3249
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 12:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0128 RNA-binding protein SA 100.0 6.5E-46 1.4E-50 378.2 23.1 430 5-459 298-735 (881)
2 KOG1915 Cell cycle control pro 100.0 8.2E-29 1.8E-33 238.4 25.5 243 3-278 57-304 (677)
3 KOG1915 Cell cycle control pro 100.0 9.8E-28 2.1E-32 231.1 27.0 252 2-287 305-589 (677)
4 KOG0495 HAT repeat protein [RN 99.9 3.4E-22 7.4E-27 199.7 27.5 248 4-283 535-782 (913)
5 KOG1914 mRNA cleavage and poly 99.9 2E-20 4.3E-25 183.9 28.2 275 2-281 36-499 (656)
6 KOG2047 mRNA splicing factor [ 99.9 6.9E-21 1.5E-25 190.2 25.2 257 3-278 405-718 (835)
7 KOG1070 rRNA processing protei 99.9 3.2E-20 6.8E-25 199.1 27.6 254 7-287 1446-1704(1710)
8 KOG0495 HAT repeat protein [RN 99.9 2E-19 4.3E-24 180.2 27.2 220 2-246 563-782 (913)
9 KOG2047 mRNA splicing factor [ 99.8 1.5E-19 3.3E-24 180.7 22.9 255 6-266 14-297 (835)
10 KOG1258 mRNA processing protei 99.8 1.9E-18 4.1E-23 173.8 26.0 273 3-283 63-395 (577)
11 PLN03134 glycine-rich RNA-bind 99.8 1.8E-18 3.9E-23 149.4 15.2 84 389-472 32-116 (144)
12 KOG1070 rRNA processing protei 99.8 6.1E-17 1.3E-21 174.2 23.0 211 43-281 1444-1661(1710)
13 KOG2396 HAT (Half-A-TPR) repea 99.7 4E-15 8.7E-20 146.0 25.1 272 6-285 92-561 (568)
14 PF05843 Suf: Suppressor of fo 99.7 8.3E-16 1.8E-20 149.6 15.2 102 181-283 34-136 (280)
15 COG5107 RNA14 Pre-mRNA 3'-end 99.6 6.1E-14 1.3E-18 135.6 24.6 269 3-286 60-365 (660)
16 TIGR01659 sex-lethal sex-letha 99.6 1E-14 2.3E-19 144.4 14.9 83 390-472 192-277 (346)
17 KOG0113 U1 small nuclear ribon 99.6 4.5E-14 9.7E-19 129.0 13.4 87 389-475 99-186 (335)
18 KOG0105 Alternative splicing f 99.6 2.8E-14 6.1E-19 120.9 10.7 78 389-469 4-82 (241)
19 KOG0121 Nuclear cap-binding pr 99.5 1.5E-14 3.2E-19 115.2 7.5 79 389-467 34-113 (153)
20 KOG0128 RNA-binding protein SA 99.5 1.5E-12 3.2E-17 135.1 24.2 429 6-472 333-817 (881)
21 COG5107 RNA14 Pre-mRNA 3'-end 99.5 1.1E-12 2.4E-17 127.1 21.1 230 23-275 261-523 (660)
22 KOG0107 Alternative splicing f 99.5 4.9E-14 1.1E-18 118.9 10.3 78 390-472 9-87 (195)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 4.7E-14 1E-18 143.4 12.1 83 389-471 267-350 (352)
24 KOG1258 mRNA processing protei 99.5 4.6E-12 9.9E-17 128.2 25.6 258 3-277 273-538 (577)
25 KOG0149 Predicted RNA-binding 99.5 3.9E-14 8.4E-19 125.6 9.3 78 391-468 12-89 (247)
26 KOG1914 mRNA cleavage and poly 99.5 4.5E-12 9.8E-17 125.6 24.4 242 9-269 10-294 (656)
27 TIGR01659 sex-lethal sex-letha 99.5 5.8E-14 1.3E-18 139.2 10.9 84 387-470 103-187 (346)
28 PF00076 RRM_1: RNA recognitio 99.5 6.9E-14 1.5E-18 106.0 8.9 69 394-463 1-70 (70)
29 KOG0122 Translation initiation 99.5 6E-14 1.3E-18 124.7 9.6 82 389-470 187-269 (270)
30 KOG4207 Predicted splicing fac 99.5 8.5E-14 1.8E-18 120.3 9.3 84 387-470 9-93 (256)
31 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1E-13 2.2E-18 140.9 10.9 81 391-471 3-84 (352)
32 PLN03120 nucleic acid binding 99.5 1.6E-13 3.5E-18 126.4 10.5 76 391-469 4-79 (260)
33 PF05843 Suf: Suppressor of fo 99.5 7.4E-13 1.6E-17 128.9 15.2 97 25-122 3-99 (280)
34 PLN03121 nucleic acid binding 99.4 6.3E-13 1.4E-17 120.3 10.2 77 389-468 3-79 (243)
35 KOG0126 Predicted RNA-binding 99.4 2.2E-14 4.7E-19 121.4 0.6 83 385-467 29-112 (219)
36 PF14259 RRM_6: RNA recognitio 99.4 8.8E-13 1.9E-17 99.8 9.3 69 394-463 1-70 (70)
37 KOG0111 Cyclophilin-type pepti 99.4 1.6E-13 3.4E-18 119.6 5.8 95 389-483 8-103 (298)
38 KOG0148 Apoptosis-promoting RN 99.4 2.8E-12 6.1E-17 115.6 12.8 76 389-470 162-238 (321)
39 TIGR01645 half-pint poly-U bin 99.4 8.8E-13 1.9E-17 137.7 11.1 84 390-473 203-287 (612)
40 KOG0125 Ataxin 2-binding prote 99.4 6.6E-13 1.4E-17 122.9 8.4 80 389-470 94-174 (376)
41 TIGR01645 half-pint poly-U bin 99.4 8.9E-13 1.9E-17 137.6 10.3 79 390-468 106-185 (612)
42 PLN03213 repressor of silencin 99.4 1.1E-12 2.3E-17 127.4 9.3 77 390-470 9-88 (759)
43 KOG2396 HAT (Half-A-TPR) repea 99.4 8.1E-10 1.8E-14 109.2 27.4 136 2-142 34-192 (568)
44 KOG0116 RasGAP SH3 binding pro 99.4 6.3E-12 1.4E-16 125.2 12.6 88 389-476 286-373 (419)
45 TIGR01648 hnRNP-R-Q heterogene 99.3 1.1E-11 2.4E-16 129.4 13.5 74 391-472 233-309 (578)
46 KOG0130 RNA-binding protein RB 99.3 3.3E-12 7.2E-17 102.7 7.3 84 385-468 66-150 (170)
47 KOG0131 Splicing factor 3b, su 99.3 1.6E-12 3.5E-17 110.5 5.5 80 389-468 7-87 (203)
48 TIGR01622 SF-CC1 splicing fact 99.3 7.5E-12 1.6E-16 131.8 10.9 82 388-469 86-167 (457)
49 smart00362 RRM_2 RNA recogniti 99.3 2.1E-11 4.6E-16 92.4 9.0 71 393-465 1-72 (72)
50 KOG0145 RNA-binding protein EL 99.3 1.4E-11 3E-16 110.3 8.4 84 389-472 39-123 (360)
51 KOG0114 Predicted RNA-binding 99.3 3.2E-11 7E-16 92.5 9.1 80 389-471 16-96 (124)
52 TIGR01628 PABP-1234 polyadenyl 99.3 1.9E-11 4.1E-16 132.0 11.2 78 393-470 2-80 (562)
53 KOG0117 Heterogeneous nuclear 99.3 1.7E-11 3.8E-16 118.2 9.5 81 389-469 81-163 (506)
54 TIGR01648 hnRNP-R-Q heterogene 99.3 1.6E-11 3.5E-16 128.2 10.0 79 389-468 56-136 (578)
55 KOG0148 Apoptosis-promoting RN 99.3 1.5E-11 3.2E-16 111.1 8.3 84 389-472 60-144 (321)
56 KOG0146 RNA-binding protein ET 99.3 6.4E-12 1.4E-16 112.9 5.8 87 386-472 280-367 (371)
57 TIGR01622 SF-CC1 splicing fact 99.3 3.8E-11 8.2E-16 126.5 12.4 79 391-469 186-265 (457)
58 TIGR01642 U2AF_lg U2 snRNP aux 99.2 4.2E-11 9.1E-16 128.0 12.4 82 389-470 293-375 (509)
59 KOG0144 RNA-binding protein CU 99.2 8.8E-12 1.9E-16 119.6 5.3 86 389-475 122-211 (510)
60 KOG0108 mRNA cleavage and poly 99.2 2E-11 4.4E-16 122.4 8.1 82 392-473 19-101 (435)
61 TIGR01628 PABP-1234 polyadenyl 99.2 3.8E-11 8.3E-16 129.6 10.6 80 390-470 284-364 (562)
62 smart00360 RRM RNA recognition 99.2 5.6E-11 1.2E-15 89.7 8.4 70 396-465 1-71 (71)
63 KOG0117 Heterogeneous nuclear 99.2 7.5E-11 1.6E-15 113.9 10.2 75 391-473 259-334 (506)
64 TIGR00990 3a0801s09 mitochondr 99.2 7.9E-09 1.7E-13 113.1 27.1 239 3-245 312-570 (615)
65 TIGR00990 3a0801s09 mitochondr 99.2 2.9E-08 6.3E-13 108.6 31.2 186 36-245 307-495 (615)
66 KOG0127 Nucleolar protein fibr 99.2 6.3E-11 1.4E-15 117.0 8.7 86 387-472 288-380 (678)
67 KOG0124 Polypyrimidine tract-b 99.2 2E-11 4.3E-16 114.4 4.5 75 392-466 114-189 (544)
68 KOG4212 RNA-binding protein hn 99.2 2.5E-10 5.5E-15 109.6 11.7 77 391-468 44-122 (608)
69 COG0724 RNA-binding proteins ( 99.2 1.2E-10 2.7E-15 114.5 9.9 79 391-469 115-194 (306)
70 cd00590 RRM RRM (RNA recogniti 99.2 2.8E-10 6E-15 86.7 9.6 73 393-466 1-74 (74)
71 TIGR02917 PEP_TPR_lipo putativ 99.1 3.8E-08 8.2E-13 112.6 31.0 267 4-280 416-695 (899)
72 KOG0127 Nucleolar protein fibr 99.1 1.9E-10 4.1E-15 113.6 8.2 81 391-472 117-198 (678)
73 PRK15174 Vi polysaccharide exp 99.1 1.4E-07 2.9E-12 103.5 31.3 270 3-283 94-381 (656)
74 PRK15174 Vi polysaccharide exp 99.1 1.2E-07 2.6E-12 103.9 30.7 268 3-281 60-345 (656)
75 TIGR02917 PEP_TPR_lipo putativ 99.1 8.4E-08 1.8E-12 109.8 31.1 269 3-281 449-730 (899)
76 smart00361 RRM_1 RNA recogniti 99.1 4.7E-10 1E-14 84.4 7.8 61 405-465 2-70 (70)
77 KOG0144 RNA-binding protein CU 99.1 3.2E-10 6.9E-15 109.1 8.2 85 389-473 32-120 (510)
78 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 6.3E-10 1.4E-14 117.1 11.1 77 389-470 273-351 (481)
79 PRK11447 cellulose synthase su 99.0 2.2E-07 4.9E-12 108.7 31.6 266 3-282 369-699 (1157)
80 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 8.5E-10 1.8E-14 116.1 10.2 74 391-470 2-78 (481)
81 KOG4626 O-linked N-acetylgluco 99.0 3.5E-08 7.6E-13 99.9 20.8 246 4-258 237-495 (966)
82 KOG0147 Transcriptional coacti 99.0 4.2E-10 9.2E-15 111.9 6.1 77 393-469 280-357 (549)
83 KOG4626 O-linked N-acetylgluco 99.0 6.5E-08 1.4E-12 98.0 20.5 262 10-281 107-415 (966)
84 PF13893 RRM_5: RNA recognitio 99.0 2.7E-09 5.9E-14 76.4 7.4 55 408-467 1-56 (56)
85 PRK11788 tetratricopeptide rep 99.0 1.3E-06 2.7E-11 90.2 30.3 86 35-122 47-136 (389)
86 PF13429 TPR_15: Tetratricopep 99.0 6.5E-09 1.4E-13 102.1 12.5 236 22-284 43-278 (280)
87 KOG0415 Predicted peptidyl pro 98.9 1.9E-09 4.2E-14 101.0 7.9 80 391-470 239-319 (479)
88 KOG0131 Splicing factor 3b, su 98.9 1.3E-09 2.8E-14 93.0 6.1 83 389-471 94-178 (203)
89 KOG4208 Nucleolar RNA-binding 98.9 2.3E-09 5.1E-14 93.7 7.4 82 389-470 47-130 (214)
90 KOG0145 RNA-binding protein EL 98.9 8.5E-09 1.8E-13 92.7 10.3 81 389-469 276-357 (360)
91 KOG4205 RNA-binding protein mu 98.9 1.6E-09 3.4E-14 104.3 6.0 83 390-472 5-87 (311)
92 PF08424 NRDE-2: NRDE-2, neces 98.9 1.3E-07 2.8E-12 94.0 19.9 114 3-121 3-130 (321)
93 PRK11447 cellulose synthase su 98.9 1.5E-06 3.3E-11 101.8 30.8 245 4-279 288-554 (1157)
94 PRK11788 tetratricopeptide rep 98.9 1.8E-06 3.9E-11 89.1 27.5 252 3-282 53-310 (389)
95 PF13429 TPR_15: Tetratricopep 98.9 1.3E-08 2.8E-13 99.9 10.7 230 24-282 9-242 (280)
96 TIGR02521 type_IV_pilW type IV 98.9 1.3E-06 2.9E-11 82.3 24.3 196 23-277 31-226 (234)
97 KOG0109 RNA-binding protein LA 98.9 3.4E-09 7.3E-14 97.0 5.9 71 392-470 3-74 (346)
98 PRK11189 lipoprotein NlpI; Pro 98.9 2.9E-06 6.2E-11 83.8 27.1 210 7-245 48-264 (296)
99 KOG0123 Polyadenylate-binding 98.8 7.6E-09 1.6E-13 103.4 8.4 78 392-472 77-155 (369)
100 KOG0153 Predicted RNA-binding 98.8 1.3E-08 2.8E-13 95.7 9.1 80 384-469 221-302 (377)
101 KOG4206 Spliceosomal protein s 98.8 1.1E-08 2.3E-13 91.3 7.9 80 390-472 8-92 (221)
102 KOG0533 RRM motif-containing p 98.8 2.9E-08 6.4E-13 91.7 10.9 81 391-472 83-164 (243)
103 PRK12370 invasion protein regu 98.8 2E-06 4.3E-11 92.7 26.8 213 3-245 279-501 (553)
104 PRK10049 pgaA outer membrane p 98.8 5.4E-06 1.2E-10 92.8 31.0 109 3-118 67-175 (765)
105 PRK10049 pgaA outer membrane p 98.8 4.6E-06 9.9E-11 93.4 30.3 267 3-281 101-454 (765)
106 PRK09782 bacteriophage N4 rece 98.8 4.1E-06 8.9E-11 94.6 29.4 246 4-281 457-704 (987)
107 KOG4205 RNA-binding protein mu 98.8 1.7E-08 3.7E-13 97.2 8.7 85 390-474 96-180 (311)
108 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.3E-08 2.9E-13 108.8 8.7 76 386-467 170-257 (509)
109 KOG0124 Polypyrimidine tract-b 98.8 1.3E-08 2.9E-13 95.7 7.3 81 392-472 211-292 (544)
110 KOG0146 RNA-binding protein ET 98.7 1.6E-08 3.4E-13 91.4 6.2 83 389-472 17-103 (371)
111 COG3063 PilF Tfp pilus assembl 98.7 2.4E-06 5.3E-11 77.1 19.3 182 34-274 46-227 (250)
112 PRK09782 bacteriophage N4 rece 98.7 2E-05 4.4E-10 89.1 30.9 237 4-274 495-731 (987)
113 PRK12370 invasion protein regu 98.7 1.1E-05 2.3E-10 87.1 27.4 203 20-245 253-469 (553)
114 KOG1457 RNA binding protein (c 98.7 3.5E-07 7.7E-12 80.7 12.5 84 389-472 32-120 (284)
115 KOG4661 Hsp27-ERE-TATA-binding 98.7 5.3E-08 1.1E-12 96.8 7.9 83 388-470 402-485 (940)
116 KOG0110 RNA-binding protein (R 98.7 4.4E-08 9.5E-13 100.6 7.6 76 392-468 516-596 (725)
117 PRK11189 lipoprotein NlpI; Pro 98.6 6.2E-06 1.3E-10 81.4 22.1 201 3-231 82-285 (296)
118 COG5191 Uncharacterized conser 98.6 1.1E-07 2.3E-12 88.8 8.2 135 2-141 34-193 (435)
119 KOG0547 Translocase of outer m 98.6 1.2E-05 2.7E-10 79.8 22.7 222 34-283 337-566 (606)
120 COG3063 PilF Tfp pilus assembl 98.6 9.2E-06 2E-10 73.4 19.7 117 3-125 53-171 (250)
121 KOG4212 RNA-binding protein hn 98.6 7.2E-08 1.6E-12 93.1 6.6 74 388-466 533-607 (608)
122 KOG0109 RNA-binding protein LA 98.6 7.2E-08 1.6E-12 88.5 6.1 74 391-472 78-152 (346)
123 KOG4209 Splicing factor RNPS1, 98.6 1.6E-07 3.6E-12 87.2 8.5 84 387-470 97-180 (231)
124 PF08424 NRDE-2: NRDE-2, neces 98.6 4.3E-06 9.4E-11 83.2 19.2 170 43-248 5-185 (321)
125 KOG0110 RNA-binding protein (R 98.6 3.7E-08 8.1E-13 101.1 4.2 82 391-472 613-695 (725)
126 PF05391 Lsm_interact: Lsm int 98.6 3.9E-08 8.4E-13 51.8 2.1 16 548-563 6-21 (21)
127 KOG1548 Transcription elongati 98.6 2.1E-07 4.6E-12 87.6 8.2 84 388-472 131-223 (382)
128 KOG0123 Polyadenylate-binding 98.5 2.1E-07 4.5E-12 93.2 8.5 75 392-472 2-77 (369)
129 TIGR02521 type_IV_pilW type IV 98.5 8.7E-05 1.9E-09 69.8 26.3 164 58-282 32-197 (234)
130 TIGR00540 hemY_coli hemY prote 98.5 0.00023 4.9E-09 73.9 30.1 251 22-281 117-397 (409)
131 KOG1155 Anaphase-promoting com 98.5 6.4E-05 1.4E-09 74.5 23.1 81 40-123 347-428 (559)
132 KOG1155 Anaphase-promoting com 98.5 3.7E-05 8.1E-10 76.1 21.4 188 3-207 341-531 (559)
133 KOG0132 RNA polymerase II C-te 98.5 3.5E-07 7.5E-12 94.8 7.6 77 390-472 420-497 (894)
134 PF08311 Mad3_BUB1_I: Mad3/BUB 98.5 2E-06 4.4E-11 72.5 10.9 111 1-120 1-126 (126)
135 PLN03218 maturation of RBCL 1; 98.4 0.00035 7.5E-09 79.9 31.6 270 3-280 490-780 (1060)
136 KOG0547 Translocase of outer m 98.4 5.1E-05 1.1E-09 75.6 21.3 220 4-245 345-565 (606)
137 PRK10747 putative protoheme IX 98.4 0.00052 1.1E-08 70.8 29.3 246 25-280 120-387 (398)
138 KOG1995 Conserved Zn-finger pr 98.4 9E-07 1.9E-11 84.4 7.7 85 388-472 63-156 (351)
139 PLN03218 maturation of RBCL 1; 98.4 0.00079 1.7E-08 77.1 32.6 270 3-280 455-745 (1060)
140 PRK14574 hmsH outer membrane p 98.4 0.00046 1E-08 76.7 29.9 67 178-245 412-478 (822)
141 KOG0226 RNA-binding proteins [ 98.4 3E-07 6.5E-12 82.9 4.0 82 389-470 188-270 (290)
142 KOG1125 TPR repeat-containing 98.4 5E-05 1.1E-09 77.3 19.6 112 162-274 444-562 (579)
143 KOG0106 Alternative splicing f 98.3 6.3E-07 1.4E-11 81.0 5.0 71 392-470 2-73 (216)
144 KOG2076 RNA polymerase III tra 98.3 0.0015 3.3E-08 70.1 30.6 255 19-279 203-508 (895)
145 TIGR00540 hemY_coli hemY prote 98.3 0.00015 3.3E-09 75.1 23.2 217 4-246 137-399 (409)
146 COG5191 Uncharacterized conser 98.3 6.3E-07 1.4E-11 83.8 4.7 81 22-103 106-186 (435)
147 KOG4211 Splicing factor hnRNP- 98.3 3.5E-06 7.6E-11 83.4 9.6 81 389-472 8-88 (510)
148 KOG4454 RNA binding protein (R 98.3 2.8E-07 6.1E-12 81.2 1.8 76 390-467 8-84 (267)
149 PRK10747 putative protoheme IX 98.3 0.00017 3.6E-09 74.5 22.5 212 3-245 136-389 (398)
150 KOG1129 TPR repeat-containing 98.3 6.7E-05 1.4E-09 71.1 17.2 185 36-245 269-457 (478)
151 PLN02789 farnesyltranstransfer 98.3 0.00098 2.1E-08 66.0 26.6 201 24-245 38-249 (320)
152 KOG0147 Transcriptional coacti 98.3 4.2E-07 9E-12 91.0 2.3 86 387-472 175-260 (549)
153 KOG2076 RNA polymerase III tra 98.3 0.0002 4.4E-09 76.5 22.2 237 2-244 224-510 (895)
154 PF04059 RRM_2: RNA recognitio 98.1 1.9E-05 4.2E-10 62.3 8.7 78 392-469 2-86 (97)
155 PLN03081 pentatricopeptide (PP 98.1 0.00075 1.6E-08 75.2 24.2 263 4-280 243-520 (697)
156 KOG4210 Nuclear localization s 98.1 4.2E-06 9.1E-11 80.7 5.3 84 389-472 182-266 (285)
157 PRK10370 formate-dependent nit 98.1 0.00013 2.9E-09 67.2 15.0 115 6-125 60-176 (198)
158 smart00777 Mad3_BUB1_I Mad3/BU 98.1 4.8E-05 1E-09 63.3 10.7 108 2-118 2-124 (125)
159 KOG4660 Protein Mei2, essentia 98.1 3.1E-06 6.7E-11 85.1 4.1 71 388-463 72-143 (549)
160 KOG1840 Kinesin light chain [C 98.0 0.0097 2.1E-07 62.1 29.3 246 19-283 195-479 (508)
161 KOG4849 mRNA cleavage factor I 98.0 2.4E-05 5.2E-10 73.8 8.6 77 391-467 80-159 (498)
162 KOG1125 TPR repeat-containing 98.0 0.00043 9.4E-09 70.7 18.1 225 34-284 296-525 (579)
163 PLN03077 Protein ECB2; Provisi 98.0 0.0034 7.4E-08 71.8 27.9 85 190-280 597-683 (857)
164 KOG3060 Uncharacterized conser 98.0 0.0027 5.8E-08 58.6 20.6 188 36-246 25-220 (289)
165 KOG1126 DNA-binding cell divis 97.9 0.00091 2E-08 69.5 19.4 186 36-245 366-551 (638)
166 PLN02789 farnesyltranstransfer 97.9 0.0027 5.9E-08 62.9 22.4 200 6-226 58-264 (320)
167 KOG2002 TPR-containing nuclear 97.9 0.0021 4.6E-08 69.5 22.4 239 3-253 470-716 (1018)
168 KOG0151 Predicted splicing reg 97.9 1.7E-05 3.7E-10 81.7 6.5 82 388-469 171-256 (877)
169 PRK15359 type III secretion sy 97.9 0.00069 1.5E-08 59.0 15.8 111 7-126 15-125 (144)
170 KOG1173 Anaphase-promoting com 97.9 0.0042 9.1E-08 63.5 22.9 233 7-246 266-518 (611)
171 KOG0120 Splicing factor U2AF, 97.9 1.5E-05 3.2E-10 81.2 5.7 86 387-472 285-371 (500)
172 PF11608 Limkain-b1: Limkain b 97.9 3.2E-05 6.9E-10 57.8 5.4 68 392-469 3-76 (90)
173 PRK10370 formate-dependent nit 97.9 0.00065 1.4E-08 62.6 15.4 81 40-121 56-138 (198)
174 TIGR03302 OM_YfiO outer membra 97.9 0.0048 1E-07 58.6 22.1 186 20-245 30-231 (235)
175 KOG4211 Splicing factor hnRNP- 97.9 4.8E-05 1E-09 75.5 8.2 78 389-467 101-179 (510)
176 PF12569 NARP1: NMDA receptor- 97.8 0.043 9.3E-07 58.0 30.2 66 179-245 189-256 (517)
177 COG2956 Predicted N-acetylgluc 97.8 0.023 5E-07 54.4 24.9 224 25-282 38-277 (389)
178 TIGR02552 LcrH_SycD type III s 97.8 0.0013 2.8E-08 56.5 15.6 114 6-125 4-117 (135)
179 smart00386 HAT HAT (Half-A-TPR 97.8 3.2E-05 6.9E-10 48.1 3.8 30 38-67 2-31 (33)
180 PRK14720 transcript cleavage f 97.8 0.011 2.5E-07 65.5 25.6 236 19-279 27-283 (906)
181 PF08311 Mad3_BUB1_I: Mad3/BUB 97.8 0.00041 8.9E-09 58.5 11.6 79 159-244 44-126 (126)
182 KOG1126 DNA-binding cell divis 97.8 0.0048 1E-07 64.3 21.2 177 45-245 409-585 (638)
183 KOG2002 TPR-containing nuclear 97.7 0.028 6E-07 61.3 27.0 270 5-280 184-478 (1018)
184 PLN03081 pentatricopeptide (PP 97.7 0.007 1.5E-07 67.5 23.7 264 3-279 207-487 (697)
185 PRK15179 Vi polysaccharide bio 97.7 0.0056 1.2E-07 67.0 22.1 138 51-246 80-217 (694)
186 KOG1174 Anaphase-promoting com 97.7 0.031 6.7E-07 55.3 24.4 228 9-245 222-466 (564)
187 KOG3060 Uncharacterized conser 97.7 0.014 3E-07 54.0 20.6 159 37-220 66-228 (289)
188 KOG1173 Anaphase-promoting com 97.7 0.021 4.5E-07 58.6 23.6 253 22-281 243-516 (611)
189 PF02184 HAT: HAT (Half-A-TPR) 97.6 6.8E-05 1.5E-09 45.1 3.1 30 198-228 2-31 (32)
190 KOG1156 N-terminal acetyltrans 97.6 0.032 7E-07 58.2 24.1 203 22-245 74-282 (700)
191 cd05804 StaR_like StaR_like; a 97.5 0.013 2.9E-07 59.4 21.1 202 20-245 3-214 (355)
192 PRK14574 hmsH outer membrane p 97.5 0.018 4E-07 64.3 23.1 183 33-241 44-227 (822)
193 PLN03077 Protein ECB2; Provisi 97.5 0.024 5.2E-07 65.0 24.7 257 4-275 408-712 (857)
194 KOG1156 N-terminal acetyltrans 97.5 0.071 1.5E-06 55.7 24.9 199 37-268 55-264 (700)
195 PRK15359 type III secretion sy 97.5 0.0019 4E-08 56.3 11.9 91 4-99 43-133 (144)
196 KOG1457 RNA binding protein (c 97.5 9.8E-05 2.1E-09 65.6 3.7 65 389-457 208-273 (284)
197 smart00386 HAT HAT (Half-A-TPR 97.5 0.00021 4.6E-09 44.3 4.2 31 198-228 2-32 (33)
198 PRK15179 Vi polysaccharide bio 97.4 0.0054 1.2E-07 67.1 17.3 114 4-123 105-218 (694)
199 KOG1190 Polypyrimidine tract-b 97.4 0.00047 1E-08 66.9 7.8 75 391-470 297-373 (492)
200 KOG4206 Spliceosomal protein s 97.3 0.00076 1.6E-08 60.7 7.3 76 388-468 143-220 (221)
201 PRK14720 transcript cleavage f 97.3 0.014 3E-07 64.8 18.4 177 45-263 17-195 (906)
202 PF08777 RRM_3: RNA binding mo 97.3 0.00081 1.7E-08 54.5 6.7 70 391-466 1-76 (105)
203 KOG0106 Alternative splicing f 97.3 0.00061 1.3E-08 61.9 6.3 72 387-466 95-167 (216)
204 TIGR02552 LcrH_SycD type III s 97.2 0.0063 1.4E-07 52.1 12.1 67 178-245 47-113 (135)
205 cd00189 TPR Tetratricopeptide 97.2 0.0085 1.8E-07 46.6 11.8 96 25-122 2-97 (100)
206 cd05804 StaR_like StaR_like; a 97.2 0.12 2.7E-06 52.3 23.1 204 54-280 3-212 (355)
207 PF13414 TPR_11: TPR repeat; P 97.2 0.0021 4.6E-08 47.8 7.5 68 22-89 2-69 (69)
208 KOG1128 Uncharacterized conser 97.2 0.014 3E-07 61.6 15.5 192 22-245 423-615 (777)
209 PF02184 HAT: HAT (Half-A-TPR) 97.1 0.0005 1.1E-08 41.4 2.9 29 39-68 3-31 (32)
210 PF13428 TPR_14: Tetratricopep 97.1 0.0015 3.2E-08 43.8 5.4 42 24-65 2-43 (44)
211 PF13432 TPR_16: Tetratricopep 97.1 0.0027 5.9E-08 46.5 7.1 61 30-91 4-64 (65)
212 PF13432 TPR_16: Tetratricopep 97.1 0.0023 5E-08 46.9 6.7 56 189-245 4-59 (65)
213 COG2956 Predicted N-acetylgluc 97.0 0.34 7.3E-06 46.7 29.0 228 20-271 66-300 (389)
214 KOG2003 TPR repeat-containing 97.0 0.25 5.4E-06 49.5 21.7 228 35-290 502-731 (840)
215 KOG1456 Heterogeneous nuclear 97.0 0.034 7.4E-07 53.7 15.3 78 389-471 118-200 (494)
216 KOG2003 TPR repeat-containing 97.0 0.43 9.3E-06 47.9 23.0 191 30-245 463-654 (840)
217 smart00777 Mad3_BUB1_I Mad3/BU 97.0 0.012 2.6E-07 49.1 10.6 76 161-243 46-125 (125)
218 KOG1855 Predicted RNA-binding 96.9 0.0025 5.4E-08 62.5 7.2 64 389-452 229-305 (484)
219 KOG1174 Anaphase-promoting com 96.9 0.25 5.5E-06 49.1 20.8 251 22-281 196-465 (564)
220 PF14559 TPR_19: Tetratricopep 96.9 0.0046 1E-07 45.7 7.2 49 198-246 6-54 (68)
221 KOG1840 Kinesin light chain [C 96.9 0.5 1.1E-05 49.7 24.1 164 67-246 208-396 (508)
222 PF14559 TPR_19: Tetratricopep 96.9 0.0032 7E-08 46.6 6.1 63 35-98 3-65 (68)
223 KOG0129 Predicted RNA-binding 96.9 0.0029 6.4E-08 63.7 7.3 65 388-452 367-432 (520)
224 PLN03088 SGT1, suppressor of 96.9 0.029 6.3E-07 56.9 14.7 94 30-125 9-102 (356)
225 PF12569 NARP1: NMDA receptor- 96.9 0.85 1.8E-05 48.4 29.7 220 22-245 37-290 (517)
226 KOG0105 Alternative splicing f 96.8 0.013 2.8E-07 50.9 10.1 71 387-464 111-184 (241)
227 PF13414 TPR_11: TPR repeat; P 96.8 0.0082 1.8E-07 44.5 8.0 62 183-245 4-66 (69)
228 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0027 5.9E-08 44.3 4.8 52 392-450 2-53 (53)
229 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0049 1.1E-07 49.1 6.8 77 391-468 6-90 (100)
230 TIGR03302 OM_YfiO outer membra 96.7 0.3 6.4E-06 46.2 20.0 174 4-215 52-235 (235)
231 KOG4162 Predicted calmodulin-b 96.7 1.2 2.6E-05 47.9 25.1 88 189-280 691-780 (799)
232 PF13428 TPR_14: Tetratricopep 96.6 0.0057 1.2E-07 40.9 5.3 42 183-225 2-43 (44)
233 COG5175 MOT2 Transcriptional r 96.6 0.0047 1E-07 58.5 6.3 79 390-468 113-201 (480)
234 cd00189 TPR Tetratricopeptide 96.6 0.041 8.9E-07 42.5 11.2 88 188-279 6-93 (100)
235 PF08952 DUF1866: Domain of un 96.6 0.0089 1.9E-07 50.6 7.0 72 391-470 27-107 (146)
236 KOG1548 Transcription elongati 96.5 0.011 2.5E-07 56.5 8.4 81 387-471 261-353 (382)
237 PRK10153 DNA-binding transcrip 96.5 0.25 5.5E-06 52.5 19.5 179 83-279 328-510 (517)
238 KOG4307 RNA binding protein RB 96.5 0.0091 2E-07 62.1 8.1 77 389-466 864-943 (944)
239 PLN03088 SGT1, suppressor of 96.5 0.034 7.4E-07 56.3 12.2 81 164-245 18-98 (356)
240 KOG3152 TBP-binding protein, a 96.4 0.0025 5.4E-08 58.3 3.2 71 391-461 74-157 (278)
241 PF13371 TPR_9: Tetratricopept 96.4 0.017 3.6E-07 43.4 7.4 60 34-94 6-65 (73)
242 PF13371 TPR_9: Tetratricopept 96.4 0.02 4.4E-07 42.9 7.6 55 191-246 4-58 (73)
243 KOG1365 RNA-binding protein Fu 96.3 0.0023 5E-08 61.6 2.6 74 393-467 163-240 (508)
244 KOG3617 WD40 and TPR repeat-co 96.3 2.2 4.7E-05 46.4 24.7 100 189-288 1028-1179(1416)
245 COG4235 Cytochrome c biogenesi 96.3 0.13 2.8E-06 49.3 13.7 112 7-124 144-258 (287)
246 COG5010 TadD Flp pilus assembl 96.2 0.43 9.4E-06 44.6 16.7 47 198-244 183-229 (257)
247 PRK15363 pathogenicity island 96.2 0.15 3.3E-06 44.2 12.9 100 20-121 32-131 (157)
248 KOG1128 Uncharacterized conser 96.2 0.23 4.9E-06 52.9 16.4 116 162-281 499-614 (777)
249 KOG2314 Translation initiation 96.2 0.021 4.5E-07 58.2 8.5 77 389-466 56-140 (698)
250 KOG1456 Heterogeneous nuclear 96.1 0.032 7E-07 53.9 9.0 79 387-470 283-363 (494)
251 KOG1129 TPR repeat-containing 96.1 1.2 2.5E-05 43.2 19.1 219 34-280 234-455 (478)
252 KOG1365 RNA-binding protein Fu 96.0 0.0093 2E-07 57.6 4.9 77 391-468 280-360 (508)
253 KOG1127 TPR repeat-containing 96.0 0.74 1.6E-05 50.9 19.2 93 31-123 10-104 (1238)
254 TIGR02795 tol_pal_ybgF tol-pal 96.0 0.29 6.2E-06 40.3 13.5 100 24-125 3-108 (119)
255 PRK15363 pathogenicity island 95.9 0.31 6.7E-06 42.4 13.1 93 188-284 41-133 (157)
256 KOG4676 Splicing factor, argin 95.8 0.011 2.4E-07 57.3 4.4 76 392-467 8-86 (479)
257 TIGR02795 tol_pal_ybgF tol-pal 95.7 0.36 7.8E-06 39.7 13.2 88 190-279 10-101 (119)
258 COG4783 Putative Zn-dependent 95.7 1.4 2.9E-05 45.1 18.9 85 34-120 317-401 (484)
259 KOG3785 Uncharacterized conser 95.7 0.93 2E-05 44.3 16.9 177 37-225 36-228 (557)
260 COG4783 Putative Zn-dependent 95.7 0.24 5.3E-06 50.3 13.6 100 3-107 324-423 (484)
261 PRK11906 transcriptional regul 95.7 0.63 1.4E-05 47.6 16.7 164 84-263 240-417 (458)
262 KOG0553 TPR repeat-containing 95.7 0.13 2.8E-06 49.0 11.1 91 33-125 91-181 (304)
263 KOG0129 Predicted RNA-binding 95.7 0.033 7.2E-07 56.4 7.4 63 388-451 256-324 (520)
264 PRK02603 photosystem I assembl 95.6 0.43 9.3E-06 42.7 14.0 80 22-102 34-116 (172)
265 KOG0624 dsRNA-activated protei 95.6 2.5 5.4E-05 41.3 19.0 221 21-245 36-297 (504)
266 KOG4162 Predicted calmodulin-b 95.6 4.4 9.6E-05 43.8 25.7 241 23-285 323-575 (799)
267 COG4235 Cytochrome c biogenesi 95.5 0.5 1.1E-05 45.3 14.3 84 39-123 138-223 (287)
268 PF14938 SNAP: Soluble NSF att 95.4 2.1 4.6E-05 41.8 19.2 124 156-281 89-223 (282)
269 PF12895 Apc3: Anaphase-promot 95.4 0.089 1.9E-06 40.7 7.6 58 184-243 27-84 (84)
270 PF09295 ChAPs: ChAPs (Chs5p-A 95.4 0.33 7.1E-06 49.5 13.5 57 188-245 206-262 (395)
271 COG5010 TadD Flp pilus assembl 95.3 2.5 5.5E-05 39.7 19.6 92 181-276 133-224 (257)
272 KOG1190 Polypyrimidine tract-b 95.3 0.052 1.1E-06 53.2 7.0 77 389-469 412-490 (492)
273 KOG2193 IGF-II mRNA-binding pr 95.2 0.015 3.3E-07 56.9 3.2 75 392-472 2-78 (584)
274 PF09295 ChAPs: ChAPs (Chs5p-A 95.2 0.38 8.3E-06 49.0 13.2 85 37-126 183-267 (395)
275 KOG0553 TPR repeat-containing 95.2 0.31 6.8E-06 46.5 11.6 83 162-245 95-177 (304)
276 KOG0120 Splicing factor U2AF, 95.2 0.055 1.2E-06 55.8 7.1 65 406-470 424-492 (500)
277 PRK10803 tol-pal system protei 95.1 0.34 7.4E-06 46.6 11.9 56 189-245 187-245 (263)
278 PF08675 RNA_bind: RNA binding 94.9 0.17 3.8E-06 38.2 7.2 51 392-451 10-60 (87)
279 KOG0624 dsRNA-activated protei 94.8 4.4 9.5E-05 39.7 24.5 47 198-244 170-216 (504)
280 KOG1127 TPR repeat-containing 94.8 1.7 3.7E-05 48.2 17.0 192 55-278 459-654 (1238)
281 CHL00033 ycf3 photosystem I as 94.6 1.2 2.6E-05 39.7 13.7 77 22-99 34-113 (168)
282 PF13431 TPR_17: Tetratricopep 94.6 0.046 1E-06 34.1 3.1 34 205-238 1-34 (34)
283 PRK10866 outer membrane biogen 94.5 4.5 9.7E-05 38.5 21.7 173 29-243 38-238 (243)
284 KOG0115 RNA-binding protein p5 94.5 0.091 2E-06 48.4 5.9 78 390-468 30-112 (275)
285 PF12688 TPR_5: Tetratrico pep 94.4 1.9 4.2E-05 35.9 13.4 91 28-120 6-102 (120)
286 PF10309 DUF2414: Protein of u 94.4 0.22 4.7E-06 35.7 6.4 52 392-451 6-60 (62)
287 PF13424 TPR_12: Tetratricopep 94.3 0.29 6.2E-06 37.1 7.9 63 182-245 5-74 (78)
288 KOG0112 Large RNA-binding prot 94.3 0.06 1.3E-06 58.1 5.0 77 388-470 452-531 (975)
289 PF04733 Coatomer_E: Coatomer 94.1 1.5 3.2E-05 43.0 14.0 97 179-279 164-261 (290)
290 PRK11906 transcriptional regul 94.0 2.3 5E-05 43.6 15.4 172 49-243 240-433 (458)
291 PF03704 BTAD: Bacterial trans 93.8 1.1 2.3E-05 38.8 11.5 46 73-119 77-122 (146)
292 PF14938 SNAP: Soluble NSF att 93.8 7.1 0.00015 38.1 20.4 121 156-279 130-259 (282)
293 KOG0112 Large RNA-binding prot 93.8 0.018 3.9E-07 62.0 -0.0 80 387-467 368-448 (975)
294 PF12895 Apc3: Anaphase-promot 93.7 0.37 7.9E-06 37.2 7.4 81 36-119 2-84 (84)
295 PRK02603 photosystem I assembl 93.6 1.1 2.4E-05 40.1 11.4 49 183-232 73-121 (172)
296 PF09976 TPR_21: Tetratricopep 93.4 2.6 5.6E-05 36.4 13.1 53 36-89 24-79 (145)
297 PRK10803 tol-pal system protei 93.4 2.3 5E-05 40.9 13.7 86 194-281 155-244 (263)
298 PRK10153 DNA-binding transcrip 93.3 2.1 4.6E-05 45.6 14.6 173 46-244 326-512 (517)
299 PF09976 TPR_21: Tetratricopep 93.0 5.5 0.00012 34.3 14.8 91 185-280 51-144 (145)
300 CHL00033 ycf3 photosystem I as 92.9 4.3 9.3E-05 36.0 14.1 64 182-246 35-101 (168)
301 KOG1996 mRNA splicing factor [ 92.9 0.3 6.6E-06 45.8 6.4 63 406-468 301-365 (378)
302 KOG4307 RNA binding protein RB 92.8 0.48 1E-05 49.9 8.4 80 388-468 308-387 (944)
303 PF13525 YfiO: Outer membrane 92.7 8 0.00017 35.6 19.4 64 27-93 9-77 (203)
304 KOG2202 U2 snRNP splicing fact 92.7 0.052 1.1E-06 50.1 1.3 60 408-468 85-146 (260)
305 KOG2416 Acinus (induces apopto 92.7 0.43 9.4E-06 49.3 7.8 78 387-470 440-522 (718)
306 PRK11634 ATP-dependent RNA hel 92.3 1.7 3.6E-05 47.6 12.4 68 393-469 488-562 (629)
307 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.34 7.3E-06 43.5 5.9 81 389-469 5-97 (176)
308 PF13431 TPR_17: Tetratricopep 92.0 0.17 3.7E-06 31.5 2.7 26 45-70 1-26 (34)
309 PF04733 Coatomer_E: Coatomer 91.4 3.9 8.5E-05 40.1 12.8 61 182-243 201-262 (290)
310 PLN03098 LPA1 LOW PSII ACCUMUL 90.9 1.3 2.9E-05 45.2 9.1 67 178-245 71-140 (453)
311 PLN03098 LPA1 LOW PSII ACCUMUL 90.4 1.2 2.7E-05 45.4 8.4 69 18-87 70-141 (453)
312 PF13512 TPR_18: Tetratricopep 90.3 5.4 0.00012 34.2 10.9 69 29-100 16-90 (142)
313 PF03704 BTAD: Bacterial trans 89.9 2.6 5.6E-05 36.3 9.2 61 184-245 64-124 (146)
314 KOG2068 MOT2 transcription fac 89.4 0.2 4.3E-06 48.4 1.8 82 389-470 75-163 (327)
315 PF13512 TPR_18: Tetratricopep 89.2 4.4 9.5E-05 34.7 9.5 54 3-58 28-82 (142)
316 KOG2376 Signal recognition par 89.1 33 0.00072 36.3 22.5 117 164-281 357-485 (652)
317 COG3071 HemY Uncharacterized e 89.0 27 0.00058 35.1 21.7 49 198-246 309-357 (400)
318 KOG0543 FKBP-type peptidyl-pro 89.0 12 0.00026 37.6 13.7 84 162-246 271-355 (397)
319 KOG3824 Huntingtin interacting 88.8 1.7 3.8E-05 41.6 7.4 59 34-93 127-185 (472)
320 PF12688 TPR_5: Tetratrico pep 88.3 9 0.00019 31.9 10.7 60 184-244 40-102 (120)
321 PF15023 DUF4523: Protein of u 88.0 2.8 6.2E-05 35.3 7.3 69 391-466 86-158 (166)
322 KOG4210 Nuclear localization s 88.0 0.33 7.1E-06 47.2 2.3 79 389-467 86-165 (285)
323 PF06552 TOM20_plant: Plant sp 88.0 9.6 0.00021 34.0 11.0 58 3-61 9-74 (186)
324 PRK15331 chaperone protein Sic 87.2 20 0.00044 31.5 14.7 88 194-285 49-136 (165)
325 PF07719 TPR_2: Tetratricopept 87.0 1.6 3.5E-05 26.5 4.4 32 25-56 3-34 (34)
326 KOG2253 U1 snRNP complex, subu 86.4 0.52 1.1E-05 49.5 2.8 68 390-466 39-107 (668)
327 KOG4285 Mitotic phosphoprotein 86.2 3.5 7.6E-05 39.2 7.8 72 391-469 197-269 (350)
328 KOG4555 TPR repeat-containing 85.8 18 0.00038 30.5 10.7 84 194-280 55-141 (175)
329 KOG4234 TPR repeat-containing 85.7 2.2 4.7E-05 38.5 5.9 69 35-106 107-175 (271)
330 PF07719 TPR_2: Tetratricopept 85.3 2.8 6E-05 25.4 4.8 27 219-245 3-29 (34)
331 PF06552 TOM20_plant: Plant sp 84.9 12 0.00027 33.3 10.1 81 40-121 8-101 (186)
332 PF13424 TPR_12: Tetratricopep 84.6 5.8 0.00013 29.7 7.3 70 214-284 2-76 (78)
333 PF07576 BRAP2: BRCA1-associat 84.6 12 0.00026 30.5 9.3 66 392-459 13-81 (110)
334 KOG3081 Vesicle coat complex C 84.5 38 0.00083 32.3 20.5 180 59-268 74-255 (299)
335 KOG0548 Molecular co-chaperone 84.5 57 0.0012 34.2 17.7 64 181-245 391-454 (539)
336 KOG1920 IkappaB kinase complex 84.0 90 0.002 36.2 19.1 35 115-149 923-957 (1265)
337 KOG1166 Mitotic checkpoint ser 83.9 9.8 0.00021 43.4 11.3 70 198-269 93-164 (974)
338 PRK15331 chaperone protein Sic 83.2 25 0.00054 30.9 11.2 99 20-122 34-134 (165)
339 KOG2591 c-Mpl binding protein, 83.1 3 6.4E-05 43.1 6.3 69 388-463 172-245 (684)
340 KOG4555 TPR repeat-containing 82.9 27 0.00059 29.4 11.8 87 36-123 56-145 (175)
341 PF13181 TPR_8: Tetratricopept 82.6 3.8 8.3E-05 24.9 4.6 29 185-214 4-32 (34)
342 COG1729 Uncharacterized protei 82.6 14 0.00031 35.1 10.2 56 189-245 185-243 (262)
343 PF03880 DbpA: DbpA RNA bindin 82.5 6.8 0.00015 29.4 6.7 58 401-467 11-74 (74)
344 PF15297 CKAP2_C: Cytoskeleton 81.8 8.1 0.00018 38.1 8.5 48 198-245 118-168 (353)
345 KOG3617 WD40 and TPR repeat-co 80.6 1E+02 0.0022 34.4 23.6 97 183-280 913-1048(1416)
346 PF15297 CKAP2_C: Cytoskeleton 80.6 13 0.00029 36.6 9.5 52 73-125 118-172 (353)
347 PF00515 TPR_1: Tetratricopept 80.1 3.5 7.5E-05 25.1 3.7 31 25-55 3-33 (34)
348 PF10602 RPN7: 26S proteasome 80.0 7.7 0.00017 34.8 7.4 61 184-245 38-101 (177)
349 TIGR02996 rpt_mate_G_obs repea 79.9 3.8 8.1E-05 26.7 3.7 27 45-71 4-30 (42)
350 COG3071 HemY Uncharacterized e 79.7 72 0.0016 32.2 29.9 95 182-283 263-357 (400)
351 KOG2135 Proteins containing th 79.4 1.2 2.6E-05 45.0 2.1 77 389-471 370-447 (526)
352 KOG3824 Huntingtin interacting 79.4 7.1 0.00015 37.6 7.0 52 194-246 128-179 (472)
353 PF13174 TPR_6: Tetratricopept 79.0 4.5 9.8E-05 24.2 4.0 27 189-216 7-33 (33)
354 KOG0550 Molecular chaperone (D 78.9 67 0.0015 32.7 13.7 67 178-245 283-349 (486)
355 KOG0890 Protein kinase of the 78.9 1.9E+02 0.0041 36.5 21.9 223 24-261 1703-1969(2382)
356 KOG4234 TPR repeat-containing 78.3 54 0.0012 29.9 12.1 63 162-225 148-210 (271)
357 COG4907 Predicted membrane pro 77.9 3.9 8.6E-05 41.3 5.1 9 443-451 525-533 (595)
358 TIGR02996 rpt_mate_G_obs repea 77.6 4.8 0.0001 26.2 3.7 34 5-42 2-35 (42)
359 PF04847 Calcipressin: Calcipr 77.4 6.4 0.00014 35.5 6.0 61 404-470 8-71 (184)
360 PF13181 TPR_8: Tetratricopept 76.1 7.3 0.00016 23.5 4.4 28 218-245 2-29 (34)
361 KOG2053 Mitochondrial inherita 75.6 1.4E+02 0.0031 33.5 24.8 65 23-90 45-109 (932)
362 PF13176 TPR_7: Tetratricopept 74.6 6.7 0.00014 24.5 3.9 26 220-245 2-27 (36)
363 PF13174 TPR_6: Tetratricopept 74.3 5.3 0.00011 23.9 3.4 20 36-55 13-32 (33)
364 PF00515 TPR_1: Tetratricopept 73.5 12 0.00026 22.6 4.9 25 189-214 8-32 (34)
365 KOG1972 Uncharacterized conser 73.3 5.7 0.00012 43.2 5.2 49 53-102 832-880 (913)
366 KOG4574 RNA-binding protein (c 72.7 2.8 6E-05 45.6 2.7 76 392-473 299-377 (1007)
367 KOG3785 Uncharacterized conser 72.6 44 0.00096 33.1 10.5 79 162-243 36-117 (557)
368 KOG0543 FKBP-type peptidyl-pro 72.0 53 0.0011 33.2 11.2 87 34-121 268-354 (397)
369 PF10602 RPN7: 26S proteasome 70.8 19 0.00041 32.3 7.4 69 218-286 37-105 (177)
370 KOG1166 Mitotic checkpoint ser 70.5 1.1E+02 0.0023 35.4 14.4 99 22-123 33-144 (974)
371 COG4785 NlpI Lipoprotein NlpI, 69.7 95 0.0021 28.8 15.4 50 40-90 82-131 (297)
372 PF13176 TPR_7: Tetratricopept 69.3 9.7 0.00021 23.7 3.7 26 26-51 2-27 (36)
373 KOG4676 Splicing factor, argin 68.8 0.78 1.7E-05 45.0 -2.0 65 392-460 152-216 (479)
374 PF11767 SET_assoc: Histone ly 67.5 30 0.00065 25.3 6.4 54 402-464 11-65 (66)
375 PRK04841 transcriptional regul 65.7 2.6E+02 0.0056 32.3 27.6 89 33-121 501-601 (903)
376 PF08640 U3_assoc_6: U3 small 62.9 9.7 0.00021 29.3 3.3 31 2-36 26-56 (83)
377 KOG0804 Cytoplasmic Zn-finger 62.5 29 0.00064 35.3 7.3 68 390-459 73-142 (493)
378 KOG0550 Molecular chaperone (D 61.2 1.3E+02 0.0028 30.8 11.3 87 37-125 217-319 (486)
379 smart00101 14_3_3 14-3-3 homol 60.8 1.5E+02 0.0033 28.1 12.4 56 157-212 144-200 (244)
380 KOG0890 Protein kinase of the 60.8 4.5E+02 0.0098 33.4 22.9 103 19-124 1666-1786(2382)
381 KOG1585 Protein required for f 60.6 1.5E+02 0.0034 28.0 11.6 74 198-288 46-125 (308)
382 PF02259 FAT: FAT domain; Int 59.3 1.9E+02 0.0042 28.7 17.0 45 183-228 253-303 (352)
383 smart00028 TPR Tetratricopepti 57.5 20 0.00044 20.1 3.6 30 25-54 3-32 (34)
384 KOG4660 Protein Mei2, essentia 57.0 19 0.0004 37.6 5.0 80 391-470 388-473 (549)
385 KOG0548 Molecular co-chaperone 56.7 2.6E+02 0.0057 29.5 20.3 48 198-245 373-420 (539)
386 PF10300 DUF3808: Protein of u 56.0 2.7E+02 0.0059 29.4 18.9 85 36-121 201-295 (468)
387 COG3629 DnrI DNA-binding trans 56.0 2E+02 0.0044 27.9 11.8 58 187-245 158-215 (280)
388 COG1729 Uncharacterized protei 56.0 1.9E+02 0.0042 27.7 12.4 84 197-282 155-243 (262)
389 PF13525 YfiO: Outer membrane 55.6 1.7E+02 0.0036 26.8 14.2 51 194-245 17-70 (203)
390 KOG4642 Chaperone-dependent E3 54.9 1.1E+02 0.0024 28.8 9.1 98 163-261 25-124 (284)
391 PF04184 ST7: ST7 protein; In 54.1 2.6E+02 0.0056 29.5 12.5 54 189-243 266-321 (539)
392 smart00596 PRE_C2HC PRE_C2HC d 53.5 27 0.00058 25.6 4.0 61 406-468 2-63 (69)
393 COG4700 Uncharacterized protei 53.3 1.8E+02 0.0038 26.4 18.1 119 106-245 102-225 (251)
394 KOG2376 Signal recognition par 53.1 3.2E+02 0.007 29.4 20.4 153 76-240 359-514 (652)
395 KOG3973 Uncharacterized conser 53.0 17 0.00038 35.4 3.8 15 44-58 25-39 (465)
396 PF05918 API5: Apoptosis inhib 52.2 4.7 0.0001 42.8 0.0 10 22-31 21-30 (556)
397 KOG0529 Protein geranylgeranyl 51.3 2.9E+02 0.0062 28.3 12.8 83 43-125 95-181 (421)
398 COG4499 Predicted membrane pro 50.8 2.3E+02 0.0051 28.6 11.1 112 162-288 262-382 (434)
399 KOG4483 Uncharacterized conser 50.4 30 0.00065 34.5 5.1 55 391-452 391-446 (528)
400 KOG4642 Chaperone-dependent E3 48.3 1.1E+02 0.0024 28.9 8.0 79 40-121 27-106 (284)
401 KOG2318 Uncharacterized conser 47.7 62 0.0013 34.2 7.0 78 387-464 170-300 (650)
402 KOG0687 26S proteasome regulat 46.4 2.8E+02 0.006 27.5 10.7 83 201-283 86-170 (393)
403 COG0457 NrfG FOG: TPR repeat [ 44.9 2.2E+02 0.0047 25.0 23.9 48 198-245 217-264 (291)
404 KOG3973 Uncharacterized conser 43.4 32 0.00069 33.6 4.0 6 81-86 27-32 (465)
405 PF00244 14-3-3: 14-3-3 protei 43.4 2.9E+02 0.0063 26.1 18.6 85 128-212 113-198 (236)
406 KOG1585 Protein required for f 43.1 3E+02 0.0065 26.2 19.0 65 213-278 186-251 (308)
407 KOG1308 Hsp70-interacting prot 43.0 29 0.00062 34.3 3.7 79 164-245 130-210 (377)
408 PF07530 PRE_C2HC: Associated 42.2 66 0.0014 23.6 4.7 63 406-470 2-65 (68)
409 COG3629 DnrI DNA-binding trans 41.7 3E+02 0.0065 26.7 10.4 48 36-84 166-213 (280)
410 COG4785 NlpI Lipoprotein NlpI, 41.6 3E+02 0.0065 25.7 13.9 72 37-125 60-131 (297)
411 KOG4648 Uncharacterized conser 40.5 2.5E+02 0.0053 28.0 9.4 33 193-226 176-208 (536)
412 PF10300 DUF3808: Protein of u 39.9 4.8E+02 0.01 27.6 20.6 84 183-270 267-356 (468)
413 PF08631 SPO22: Meiosis protei 39.6 3.6E+02 0.0078 26.1 19.2 79 41-120 105-184 (278)
414 PF01535 PPR: PPR repeat; Int 39.5 47 0.001 19.1 3.1 27 219-245 2-28 (31)
415 KOG3081 Vesicle coat complex C 39.1 3.6E+02 0.0079 26.0 10.4 49 198-246 152-202 (299)
416 COG3947 Response regulator con 39.1 1.2E+02 0.0026 29.5 7.0 31 74-104 295-325 (361)
417 PHA00490 terminal protein 39.0 3E+02 0.0065 24.9 10.0 75 93-175 181-255 (266)
418 PF13281 DUF4071: Domain of un 38.8 4.4E+02 0.0095 26.8 20.5 177 55-245 139-333 (374)
419 PRK10590 ATP-dependent RNA hel 38.4 3.3E+02 0.007 28.6 11.2 11 392-402 315-325 (456)
420 PRK10941 hypothetical protein; 38.4 3.7E+02 0.0079 26.0 10.5 65 191-257 190-254 (269)
421 cd02684 MIT_2 MIT: domain cont 37.7 1.5E+02 0.0033 22.2 6.2 17 229-245 18-34 (75)
422 PF02259 FAT: FAT domain; Int 37.7 4.2E+02 0.009 26.2 15.1 65 21-86 144-212 (352)
423 COG4700 Uncharacterized protei 36.5 3.3E+02 0.0072 24.8 16.4 99 25-125 91-192 (251)
424 KOG2053 Mitochondrial inherita 36.0 7E+02 0.015 28.4 23.0 97 37-138 23-121 (932)
425 PF12854 PPR_1: PPR repeat 35.8 97 0.0021 18.9 4.1 26 217-242 7-32 (34)
426 KOG4454 RNA binding protein (R 35.5 11 0.00023 34.4 -0.4 62 389-451 78-143 (267)
427 PF13374 TPR_10: Tetratricopep 35.5 98 0.0021 19.1 4.5 28 219-246 4-31 (42)
428 KOG4648 Uncharacterized conser 35.1 1.3E+02 0.0027 30.0 6.6 88 35-125 109-197 (536)
429 PF03468 XS: XS domain; Inter 34.8 76 0.0016 26.2 4.5 46 404-452 30-76 (116)
430 PRK10941 hypothetical protein; 34.7 1.5E+02 0.0034 28.6 7.3 53 37-90 195-247 (269)
431 KOG4410 5-formyltetrahydrofola 34.3 45 0.00097 31.7 3.4 46 392-443 331-377 (396)
432 PF13041 PPR_2: PPR repeat fam 34.2 1.2E+02 0.0025 20.2 4.8 30 217-246 3-32 (50)
433 TIGR03504 FimV_Cterm FimV C-te 33.8 78 0.0017 21.0 3.6 24 222-245 4-27 (44)
434 cd02677 MIT_SNX15 MIT: domain 33.3 1.3E+02 0.0027 22.6 5.1 16 230-245 19-34 (75)
435 COG4976 Predicted methyltransf 33.2 62 0.0013 30.2 4.0 57 34-91 6-62 (287)
436 KOG2690 Uncharacterized conser 33.0 65 0.0014 31.3 4.3 45 77-122 193-238 (331)
437 KOG2193 IGF-II mRNA-binding pr 31.9 8.1 0.00018 38.6 -1.9 73 392-467 81-154 (584)
438 PF09986 DUF2225: Uncharacteri 31.8 4.2E+02 0.0091 24.5 10.6 85 197-281 91-192 (214)
439 KOG2114 Vacuolar assembly/sort 31.6 8.1E+02 0.018 27.8 18.0 94 5-100 347-443 (933)
440 PRK04841 transcriptional regul 31.2 8.6E+02 0.019 28.0 28.3 197 72-281 423-639 (903)
441 PF15513 DUF4651: Domain of un 30.9 1.1E+02 0.0023 22.1 4.0 18 406-423 9-26 (62)
442 TIGR00756 PPR pentatricopeptid 30.5 1.2E+02 0.0025 17.7 4.4 26 220-245 3-28 (35)
443 KOG2422 Uncharacterized conser 30.1 7.3E+02 0.016 26.8 12.7 29 217-245 416-447 (665)
444 KOG0739 AAA+-type ATPase [Post 29.2 2.9E+02 0.0063 27.1 7.8 36 229-274 22-58 (439)
445 KOG2114 Vacuolar assembly/sort 29.1 4.3E+02 0.0092 29.8 10.0 61 161-223 347-407 (933)
446 KOG4019 Calcineurin-mediated s 28.9 1.3E+02 0.0028 26.9 5.0 73 392-470 11-90 (193)
447 PF05435 Phi-29_GP3: Phi-29 DN 28.0 3.5E+02 0.0077 24.5 7.6 42 93-137 181-222 (266)
448 PRK15490 Vi polysaccharide bio 27.8 3.5E+02 0.0076 29.3 9.1 76 165-243 25-100 (578)
449 PF10579 Rapsyn_N: Rapsyn N-te 27.5 2.2E+02 0.0048 21.7 5.5 48 198-245 21-68 (80)
450 PRK14136 recX recombination re 27.4 6.1E+02 0.013 25.0 13.3 47 198-244 256-303 (309)
451 KOG1972 Uncharacterized conser 27.1 1.7E+02 0.0038 32.5 6.7 48 22-69 835-882 (913)
452 PF14853 Fis1_TPR_C: Fis1 C-te 27.0 2E+02 0.0044 19.9 4.9 25 193-218 12-36 (53)
453 COG5193 LHP1 La protein, small 26.7 31 0.00067 34.6 1.1 62 390-451 173-244 (438)
454 cd02683 MIT_1 MIT: domain cont 26.7 2.1E+02 0.0045 21.6 5.4 26 229-264 18-43 (77)
455 KOG2690 Uncharacterized conser 26.5 78 0.0017 30.8 3.6 9 112-120 193-201 (331)
456 COG4976 Predicted methyltransf 26.2 98 0.0021 29.0 4.1 53 193-246 6-58 (287)
457 COG3947 Response regulator con 26.0 3E+02 0.0066 26.8 7.3 54 189-243 286-339 (361)
458 COG0724 RNA-binding proteins ( 25.3 1E+02 0.0022 29.1 4.5 55 388-442 222-276 (306)
459 PF08780 NTase_sub_bind: Nucle 25.2 4E+02 0.0087 22.2 8.6 62 59-120 43-108 (124)
460 PRK04778 septation ring format 24.9 9.2E+02 0.02 26.2 12.6 26 218-243 176-203 (569)
461 KOG1464 COP9 signalosome, subu 24.6 6.4E+02 0.014 24.3 13.3 56 198-253 160-227 (440)
462 KOG0530 Protein farnesyltransf 24.4 6.5E+02 0.014 24.3 14.2 127 96-245 46-175 (318)
463 PF12583 TPPII_N: Tripeptidyl 23.9 1.1E+02 0.0023 25.8 3.5 28 198-225 91-118 (139)
464 COG3118 Thioredoxin domain-con 22.1 7.5E+02 0.016 24.2 10.9 82 198-281 149-230 (304)
465 PRK10590 ATP-dependent RNA hel 22.1 2.3E+02 0.0049 29.8 6.6 7 434-440 343-349 (456)
466 PF09707 Cas_Cas2CT1978: CRISP 21.9 1.5E+02 0.0032 23.1 3.7 48 392-442 26-73 (86)
467 PF04184 ST7: ST7 protein; In 21.8 9.8E+02 0.021 25.4 11.9 82 198-280 215-321 (539)
468 PF10567 Nab6_mRNP_bdg: RNA-re 21.0 2E+02 0.0043 27.9 5.1 59 390-448 14-79 (309)
469 KOG4365 Uncharacterized conser 21.0 21 0.00046 36.0 -1.2 77 393-470 5-82 (572)
470 PF13041 PPR_2: PPR repeat fam 20.1 2.7E+02 0.0059 18.3 5.8 27 185-212 6-32 (50)
No 1
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.5e-46 Score=378.20 Aligned_cols=430 Identities=32% Similarity=0.504 Sum_probs=308.1
Q ss_pred hHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008442 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (565)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (565)
+..||..++..+. ....|+.||+||++.|++.+++.+|||++..+|.+.++|+.|..|+....+.+.....++-||
T Consensus 298 ~~~~e~~~q~~~~----~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra 373 (881)
T KOG0128|consen 298 LFKFERLVQKEPI----KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRA 373 (881)
T ss_pred HHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchh
Confidence 3445555555554 889999999999999999999999999999999999999999999999888888899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 008442 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (565)
Q Consensus 85 l~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~ 164 (565)
+++|||...||.+|+..|++.......|...|++++...+. ++ .+++.++....+.+. ..+++.++.+|
T Consensus 374 ~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-------l~---~~~~~~rr~~~~~~~-s~~~s~lr~~F 442 (881)
T KOG0128|consen 374 VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-------LH---NDYLAYRRRCTNIID-SQDYSSLRAAF 442 (881)
T ss_pred hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-------HH---HHHHHHHHhhcccch-hhhHHHHHHHH
Confidence 99999999999999999999888888898999998864322 22 233333333333322 25788999999
Q ss_pred HHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 008442 165 QRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 165 ~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~-lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
..|..+|...... .++.+.+.+.|+++|..+.++++.||.||+..+......+. .|+.|+++|..+|+...||.++.+
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ 522 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRK 522 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHH
Confidence 9999999999987 89999999999999999999999999999999998555555 999999999999999999999999
Q ss_pred HHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHHHHHHHHhhhccCCcchhhhhhhccccccccccCCC
Q 008442 243 CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDS 322 (565)
Q Consensus 243 al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~ 322 (565)
|+......+....+++.|..||+++|+++++..+..+.+++.......++++++....+.+...+ .....++...
T Consensus 523 ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke-----~~~~~~k~~~ 597 (881)
T KOG0128|consen 523 AYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVYPEQQKKE-----IQRRQFKGEG 597 (881)
T ss_pred HHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCCcchhhHH-----hhHHHhhccc
Confidence 98754433335679999999999999999999999999998887666555544433222111111 0011111111
Q ss_pred CccccCCcccccccCCCC----CCCCCch-hhhhhccccccccCCCcccccccCCCCCC-cccCCCCCCCCCCCCCeEEE
Q 008442 323 NISYEQSPAKRQKHAPQK----PKKVHDK-EKRQVQNLAEENEGRETKQTVEEQPKKQP-IKDAVPGRTKGFTDECTAFL 396 (565)
Q Consensus 323 ~~~~~~~~~k~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V 396 (565)
.......+.++.+...++ ....+.. .+..++ +.+..+......++..+. ..+.....+...++.+++||
T Consensus 598 ~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-----a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fv 672 (881)
T KOG0128|consen 598 NVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-----AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFV 672 (881)
T ss_pred ccccccCccccccccccchhhhhhccccchhhcccc-----cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHH
Confidence 111111111111110000 0000000 000000 000000000000010000 11122223444577789999
Q ss_pred cCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCC
Q 008442 397 SNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLG 459 (565)
Q Consensus 397 ~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g 459 (565)
+||+..+.+.+|...|..+|.+..+++.....+++.||+|||+|..++.+.+||.++...+-|
T Consensus 673 snl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 673 SNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred hhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 999999999999999999999888877755668999999999999999999999976555555
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=8.2e-29 Score=238.45 Aligned_cols=243 Identities=23% Similarity=0.395 Sum_probs=211.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
..|+.||..|.++.. ++..|+.|+.||..++++.+++.+|||||.....+..||+.|+++..+ ++...+++.|++
T Consensus 57 RkRkefEd~irrnR~----~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk-nk~vNhARNv~d 131 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRL----NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK-NKQVNHARNVWD 131 (677)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh-hhhHhHHHHHHH
Confidence 479999999999988 899999999999999999999999999999999999999999997654 447788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~ 160 (565)
||+..+|...+||..|+. +|...+++.-+++||+|-+...++ .|..|+.+.+.|. +++.+
T Consensus 132 RAvt~lPRVdqlWyKY~y-mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRyk-----------------eiera 193 (677)
T KOG1915|consen 132 RAVTILPRVDQLWYKYIY-MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYK-----------------EIERA 193 (677)
T ss_pred HHHHhcchHHHHHHHHHH-HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh-----------------HHHHH
Confidence 999999999999999997 777789999999999999987765 3444555544443 56677
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH---HHHHHHHHHHHHcCChHHHH
Q 008442 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 161 ~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~---~lw~~yi~~e~~~~~~~~aR 237 (565)
|.+|++..- +++...-|+.|++||.++| ++..||.+|++|+..+++.. .+..+|+.||..+..+++||
T Consensus 194 R~IYerfV~--------~HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 194 RSIYERFVL--------VHPKVSNWIKYARFEEKHG-NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHhe--------ecccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777775433 3466788999999999999 99999999999999977653 48999999999999999999
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (565)
-||+-||. ..+.+..+.|+..|+.||..||+...++.++.
T Consensus 265 ~iykyAld-~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 265 FIYKYALD-HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHH-hcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998 45777778999999999999999999887763
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9.8e-28 Score=231.05 Aligned_cols=252 Identities=22% Similarity=0.438 Sum_probs=207.4
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcc
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---------LWLDYTQYLDKTLK 72 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~---------lW~~Y~~~l~~~~~ 72 (565)
.+.|..||..|..+|+ +++.|..|+.++...|+.++|+.+|||||...|...+ ||+.|+-|.+-..+
T Consensus 305 ~KRk~qYE~~v~~np~----nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY----NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred hhhhhHHHHHHHhCCC----CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999 9999999999999999999999999999999886543 99999999998888
Q ss_pred hhhHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcccc-cHHHHHHHHHHHHHHHHHHhh
Q 008442 73 VGNVVRDVYSRATKNCPWV----GELWVRSLLSLERSRASEEEISTVFEKSL-LCAFS-TFEEYLDLFLTRIDGLRRRIL 146 (565)
Q Consensus 73 ~~~~~~~v~erAl~~~p~~----~~lW~~yi~~le~~~~~~~~~~~if~ral-~~~~~-~~~~~~~~~~~~~~~~~r~~~ 146 (565)
+.+..++||+.+|..+|+. ..||+.|+. +|..+.++..++.++-.|+ .||.+ .+..||.+.+...
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~-feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~-------- 451 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQ-FEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR-------- 451 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHH-HHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh--------
Confidence 9999999999999999974 589999998 6666788999999999999 47755 4566666655432
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc--hHHHHHHHH
Q 008442 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYI 224 (565)
Q Consensus 147 ~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~lw~~yi 224 (565)
+++++|.+|+ .++...|..|..|..|+.||..+| +.++||.||+-|+..+.- ..-+|..||
T Consensus 452 ---------efDRcRkLYE-------kfle~~Pe~c~~W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 452 ---------EFDRCRKLYE-------KFLEFSPENCYAWSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred ---------hHHHHHHHHH-------HHHhcChHhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 3444555555 444445677889999999999999 999999999999988533 356999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH-----HhC-----------CHHHHHHHHHHHhhHHHHH
Q 008442 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER-----EYG-----------TLEDFDHSVQKVTPRLEEL 287 (565)
Q Consensus 225 ~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~-----~~G-----------~~~~~~~~~~k~~~~~~~~ 287 (565)
+||...|.+++||+||++.|.. .....+|..+..||. ..| +...++.++++++..+++.
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r----t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR----TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh----cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999974 223459999999998 334 4445666777777666543
No 4
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=3.4e-22 Score=199.73 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=214.9
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+|.+|-.+|+.+|. +..+|..-+-||+.+|..+....++++|+..||.++.||++|++--+.. ++...++.|+.+
T Consensus 535 arAVya~alqvfp~----k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il~~ 609 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC----KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHhhccc----hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 78999999999987 7889999999999999999999999999999999999999999865554 477779999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
|+...|++.+||...+. +|..+..++++|.+|.+|...... -.+|..+. .++...+.
T Consensus 610 af~~~pnseeiwlaavK-le~en~e~eraR~llakar~~sgT-----eRv~mKs~-----------------~~er~ld~ 666 (913)
T KOG0495|consen 610 AFEANPNSEEIWLAAVK-LEFENDELERARDLLAKARSISGT-----ERVWMKSA-----------------NLERYLDN 666 (913)
T ss_pred HHHhCCCcHHHHHHHHH-HhhccccHHHHHHHHHHHhccCCc-----chhhHHHh-----------------HHHHHhhh
Confidence 99999999999999998 888888999999999999864332 14455444 33344566
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+++|+.+++..+...+.++.||+...++|...+ +++.||..|..+++.+|++.-+|+..+++|...|++.+||.|++++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 777777777777778889999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
..+ .+....+|..-+++|.+.|+.+.++.++.++++.
T Consensus 746 rlk---NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 746 RLK---NPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred Hhc---CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 753 3455689999999999999999999887776543
No 5
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.88 E-value=2e-20 Score=183.90 Aligned_cols=275 Identities=18% Similarity=0.251 Sum_probs=198.1
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh----hHH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG----NVV 77 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~----~~~ 77 (565)
-+.|..||+.+...|. ...+|+.||+.|....+++.+..+|.|||... .+.+||..|+.|+.+..... +.+
T Consensus 36 ~~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 3689999999999998 78899999999999999999999999999876 77999999999998876443 346
Q ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcccc----cHHHHHHHHH-------
Q 008442 78 RDVYSRATKNCP---WVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFS----TFEEYLDLFL------- 135 (565)
Q Consensus 78 ~~v~erAl~~~p---~~~~lW~~yi~~le~--------~~~~~~~~~~if~ral~~~~~----~~~~~~~~~~------- 135 (565)
...|+-|+..|. .+..||..|+.+|+. .+..++.+|.+|+||+..|.. .|.+|..+..
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ta 190 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITA 190 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 678999999885 678899999998874 224688899999999987654 2333332222
Q ss_pred ---------------------------------------------------HHHHHHHH-------------Hhhccc--
Q 008442 136 ---------------------------------------------------TRIDGLRR-------------RILFSG-- 149 (565)
Q Consensus 136 ---------------------------------------------------~~~~~~~r-------------~~~~~~-- 149 (565)
.++.+.+. |+.+.-
T Consensus 191 rK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ 270 (656)
T KOG1914|consen 191 RKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQ 270 (656)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 11111110 000000
Q ss_pred c----------c-------hhhhh--------------HHHHHHHHHHHHHHH---------------------------
Q 008442 150 E----------V-------EGVLD--------------YSLIRETFQRASDYL--------------------------- 171 (565)
Q Consensus 150 ~----------~-------e~~~~--------------~~~~~~~~~~a~~~l--------------------------- 171 (565)
. + ....+ ...+..+|+.+++.+
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 0 0 00000 111223333322211
Q ss_pred ---------------------------------------HhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 172 ---------------------------------------SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 172 ---------------------------------------~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
..+-+.....+.++..-|-+|....+|..-|-.||+-+|+.
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 11111111123344455667877888999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 213 ~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+++...+-+.|++|....++-.++|.+|++++....+.+....||+.|++||-.+||++++.++.++-.
T Consensus 431 f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 431 FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999998645556667899999999999999999987665543
No 6
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.88 E-value=6.9e-21 Score=190.24 Aligned_cols=257 Identities=18% Similarity=0.264 Sum_probs=158.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC-------------------CHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV-------------------SSDLWLDY 63 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~-------------------~~~lW~~Y 63 (565)
.+|.+||.++..+...-.+...+|..|++.|..+.+.+.+..+.++|+.. |. +..+|..|
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 47888888887764322334567888888888877777888888777643 22 23488888
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHH
Q 008442 64 TQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL-CAFSTFEEYLDLFLTRIDGLR 142 (565)
Q Consensus 64 ~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~-~~~~~~~~~~~~~~~~~~~~~ 142 (565)
+++++..+ ..+..+.||+|.+..-=-.+++-+.|..+||. +..+++..++|+|.+. +.++ ...++|.+|+.-.-
T Consensus 484 ~DleEs~g-tfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p---~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 484 ADLEESLG-TFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWP---NVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCc---cHHHHHHHHHHHHH
Confidence 88765443 44555555555554332344555555554444 3444555555555543 1211 22233333322111
Q ss_pred HHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCC-------------------------
Q 008442 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK------------------------- 197 (565)
Q Consensus 143 r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~------------------------- 197 (565)
.+. ++ ...+.+|..|++|++.+.. ...-.+++.|++||+++|-
T Consensus 559 ~ry--gg-----~klEraRdLFEqaL~~Cpp-----~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myn 626 (835)
T KOG2047|consen 559 KRY--GG-----TKLERARDLFEQALDGCPP-----EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYN 626 (835)
T ss_pred HHh--cC-----CCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111 11 1233445555544442210 0012344455555544330
Q ss_pred ----------ChHHHHHHHHHHHHHccch--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q 008442 198 ----------DMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (565)
Q Consensus 198 ----------~~~~ar~i~e~~l~~~~~~--~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~ 265 (565)
.+...|.||+++|+..|++ .++.+.|++||...|.+++||.||..+-+ .++......+|+.|-.||-
T Consensus 627 i~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEv 705 (835)
T KOG2047|consen 627 IYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEV 705 (835)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHH
Confidence 2447889999999997765 57999999999999999999999999977 4566667799999999999
Q ss_pred HhCCHHHHHHHHH
Q 008442 266 EYGTLEDFDHSVQ 278 (565)
Q Consensus 266 ~~G~~~~~~~~~~ 278 (565)
+|||.+++++.+.
T Consensus 706 rHGnedT~keMLR 718 (835)
T KOG2047|consen 706 RHGNEDTYKEMLR 718 (835)
T ss_pred hcCCHHHHHHHHH
Confidence 9999999998763
No 7
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.87 E-value=3.2e-20 Score=199.11 Aligned_cols=254 Identities=19% Similarity=0.329 Sum_probs=193.9
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC-CCCH----HHHHHHHHHHHHhcchhhHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSS----DLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~-p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
-||..+...|. ..-.|++|+.|-.+.++++.++.++||||... +.-. .+|+.|++++...+ ..+.+.++|
T Consensus 1446 DferlvrssPN----SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kVF 1520 (1710)
T KOG1070|consen 1446 DFERLVRSSPN----SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKVF 1520 (1710)
T ss_pred HHHHHHhcCCC----cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHH
Confidence 46666666665 55678888888888888888888888888863 3222 38888888765555 556688888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~ 161 (565)
+||++.|- ...++...+.+++. ...++.+.++|++.++. +.....+|..|.+++-++- +.+.++
T Consensus 1521 eRAcqycd-~~~V~~~L~~iy~k-~ek~~~A~ell~~m~KK----F~q~~~vW~~y~~fLl~~n----------e~~aa~ 1584 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEK-SEKNDEADELLRLMLKK----FGQTRKVWIMYADFLLRQN----------EAEAAR 1584 (1710)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHH-hhcchhHHHHHHHHHHH----hcchhhHHHHHHHHHhccc----------HHHHHH
Confidence 88888873 23455555555555 34456677777777642 2234567777776664332 335677
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
.++.+|+.++.. ..+..++..+|+||.++| |.+++|.+|+-.+..+|...++|.-||+.|+.+|+.+.+|.+|+
T Consensus 1585 ~lL~rAL~~lPk-----~eHv~~IskfAqLEFk~G-DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1585 ELLKRALKSLPK-----QEHVEFISKFAQLEFKYG-DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHhhcch-----hhhHHHHHHHHHHHhhcC-CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888887754 236788999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHH
Q 008442 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEEL 287 (565)
Q Consensus 242 ~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~~~ 287 (565)
|++...+......-++..|++||..+||.+.++.+-.+|..+.+..
T Consensus 1659 Rvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1659 RVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 9998655555556799999999999999999998877777666543
No 8
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=2e-19 Score=180.15 Aligned_cols=220 Identities=20% Similarity=0.275 Sum_probs=176.5
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
|..|..++..|++.....|....+|+.|+.--...|+...++.++.+|+..+|++.+||+.-++.+.. +...++++.+|
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e-n~e~eraR~ll 641 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-NDELERARDLL 641 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHHH
Confidence 44566666666655444444677999999988899999999999999999999999999999986554 44788999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~ 161 (565)
.+|...-| ...+|..|+. +|+..+.++++..++++||+..+. +-.+|+....... ...+++..|
T Consensus 642 akar~~sg-TeRv~mKs~~-~er~ld~~eeA~rllEe~lk~fp~----f~Kl~lmlGQi~e----------~~~~ie~aR 705 (913)
T KOG0495|consen 642 AKARSISG-TERVWMKSAN-LERYLDNVEEALRLLEEALKSFPD----FHKLWLMLGQIEE----------QMENIEMAR 705 (913)
T ss_pred HHHhccCC-cchhhHHHhH-HHHHhhhHHHHHHHHHHHHHhCCc----hHHHHHHHhHHHH----------HHHHHHHHH
Confidence 99998655 5789999998 899999999999999999985443 3344443332211 111334445
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
.+|. ..+..++.+..||+..+++|+..+ ++.+||.|++++...+|.+..+|+..|.+|.+.|+.+.|+.+..
T Consensus 706 ~aY~-------~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 706 EAYL-------QGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHH-------hccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 5544 445556778889999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 008442 242 RCYSK 246 (565)
Q Consensus 242 ~al~~ 246 (565)
+||+.
T Consensus 778 kALQe 782 (913)
T KOG0495|consen 778 KALQE 782 (913)
T ss_pred HHHHh
Confidence 99983
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.85 E-value=1.5e-19 Score=180.72 Aligned_cols=255 Identities=18% Similarity=0.291 Sum_probs=185.7
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-------hhHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-------GNVVR 78 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~-------~~~~~ 78 (565)
..||+.|.++|. ++..|+.||++-.. ....++..+|||||+..|.++.||..|+++-..+.+. .+.+.
T Consensus 14 vpfEeEilRnp~----svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn 88 (835)
T KOG2047|consen 14 VPFEEEILRNPF----SVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVN 88 (835)
T ss_pred cchHHHHHcCch----hHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence 479999999999 89999999998654 3446788999999999999999999999876654432 34578
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----cHHHHHHHHHH------HHHHHHHHhh-
Q 008442 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLT------RIDGLRRRIL- 146 (565)
Q Consensus 79 ~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~-----~~~~~~~~~~~------~~~~~~r~~~- 146 (565)
..|+||+.....++.||+.|+.++-. ++.+..+|.+|.+||...+. .|..|+.+... -+...||...
T Consensus 89 ~c~er~lv~mHkmpRIwl~Ylq~l~~-Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPRIWLDYLQFLIK-QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh-cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 89999999777778999999996644 78899999999999975432 34444433221 1112222222
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhhc-------CCchhHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHccchH
Q 008442 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMK-------NTDGLLRLYAYWAHLEQSMGKDM--VSARGVWERLLKISGAML 217 (565)
Q Consensus 147 ~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~-------~~~~~~~l~~~~a~~e~~~~~~~--~~ar~i~e~~l~~~~~~~ 217 (565)
.....+.++++-...+.+..+.+.+...+. .....+++|....++-..+-+-+ -....|+..++..+++++
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 223344444444444445555544443332 24556778888877776543111 145678999999999886
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH
Q 008442 218 -EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (565)
Q Consensus 218 -~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~ 266 (565)
.+|...++|+.+.|.+++||.+|+.+|.......+-..|++.|..||+.
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence 5999999999999999999999999998766666677899999999976
No 10
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.83 E-value=1.9e-18 Score=173.81 Aligned_cols=273 Identities=20% Similarity=0.332 Sum_probs=207.1
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
..|..|-..|...|. ....|..|+++|.+.|..+.+..+|||+|...|.+.++|+.|+.|+.....+++.++..|+
T Consensus 63 ~~r~~y~~fL~kyPl----~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPL----CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHhhCcc----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 468899999999998 8899999999999999999999999999999999999999999999887778888999999
Q ss_pred HHHHcCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-------------HHhh
Q 008442 83 RATKNCPW---VGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR-------------RRIL 146 (565)
Q Consensus 83 rAl~~~p~---~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~-------------r~~~ 146 (565)
||+..++. +..||-.||. +|..+.+...+-.||+|.|..|.-.+..+...|...++... +...
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie-~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIE-FENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhccHHHHHHHH-HHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 99999974 6789999999 45557888999999999998765433333333333222100 0000
Q ss_pred cc--------ccch---h----------hhh---------HHHHHHHHHHHHHHHHhh-------------hcC-CchhH
Q 008442 147 FS--------GEVE---G----------VLD---------YSLIRETFQRASDYLSEQ-------------MKN-TDGLL 182 (565)
Q Consensus 147 ~~--------~~~e---~----------~~~---------~~~~~~~~~~a~~~l~~~-------------~~~-~~~~~ 182 (565)
.. ...+ . ..+ ...-+.+|+.....+... .+. ....+
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 00 0000 0 000 011122333222222111 111 23346
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~ 262 (565)
.-|.+|..++...| +.+.+.-+|++++-.+....++|+.|+.|....|+.+-|..++.++.... ....+.|-..|..
T Consensus 298 ~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH--VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--CCCCcHHHHHHHH
Confidence 67999999999999 99999999999999999999999999999999999999999999998643 3345578888999
Q ss_pred HHHHhCCHHHHHHHHHHHhhH
Q 008442 263 FEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 263 fE~~~G~~~~~~~~~~k~~~~ 283 (565)
||+..||..+++.+++++...
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh
Confidence 999999999999999887644
No 11
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.8e-18 Score=149.40 Aligned_cols=84 Identities=23% Similarity=0.456 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+++|.+||.|.++.|+.++.+++++|||||+|.++++|+.|+. +++..|+|++|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 446799999999999999999999999999999999999899999999999999999999997 8999999999999998
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 12
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.76 E-value=6.1e-17 Score=174.25 Aligned_cols=211 Identities=19% Similarity=0.271 Sum_probs=173.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008442 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PWV----GELWVRSLLSLERSRASEEEISTVFE 117 (565)
Q Consensus 43 ~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~-p~~----~~lW~~yi~~le~~~~~~~~~~~if~ 117 (565)
.+=|+|.|...|++.-+|+.|+.|...-. +.+.+|++++|||..+ +.- ..||+.|+. ||...++.+.+.++|+
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lN-lEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLN-LENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHh-HHHhhCcHHHHHHHHH
Confidence 46799999999999999999999876544 7888999999999977 322 259999998 8888889999999999
Q ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCC
Q 008442 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK 197 (565)
Q Consensus 118 ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~ 197 (565)
||.+.. +-+.++++.+..+ ..-+-|..|.+++...++.....+.+|..|+++..+..
T Consensus 1522 RAcqyc-----d~~~V~~~L~~iy-----------------~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n- 1578 (1710)
T KOG1070|consen 1522 RACQYC-----DAYTVHLKLLGIY-----------------EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN- 1578 (1710)
T ss_pred HHHHhc-----chHHHHHHHHHHH-----------------HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc-
Confidence 998732 2233444433222 12244566667776666666667889999999999988
Q ss_pred ChHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 008442 198 DMVSARGVWERLLKISGA--MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~--~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (565)
+-+.||.++.+||+..|. +.++.-.++++|..+|+.+++|.+|+-.+. ..+.-.++|..|++.|..+|+.+.++.
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHH
Confidence 889999999999999887 789999999999999999999999999987 223356899999999999999999999
Q ss_pred HHHHHh
Q 008442 276 SVQKVT 281 (565)
Q Consensus 276 ~~~k~~ 281 (565)
++++++
T Consensus 1656 lfeRvi 1661 (1710)
T KOG1070|consen 1656 LFERVI 1661 (1710)
T ss_pred HHHHHH
Confidence 999986
No 13
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4e-15 Score=145.97 Aligned_cols=272 Identities=17% Similarity=0.264 Sum_probs=184.1
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
..|..++.+++. +...|..||.|.++.+.+.++..+|..+|..+|++++||+.-+.|+..-+-+.+.++++|.|+|
T Consensus 92 ~lyr~at~rf~~----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 92 FLYRRATNRFNG----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHhcCC----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 357788888876 8899999999999999999999999999999999999999999999887777889999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhc--------------CC----------------------------H--------------
Q 008442 86 KNCPWVGELWVRSLLSLERSR--------------AS----------------------------E-------------- 109 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~--------------~~----------------------------~-------------- 109 (565)
+.+|.++.||..|++...... .+ .
T Consensus 168 R~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel 247 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKEL 247 (568)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHH
Confidence 999999999999986211000 00 0
Q ss_pred ---------------------------------------------------HHHHHHHHHHHhcccc--cHHHHHHHHHH
Q 008442 110 ---------------------------------------------------EEISTVFEKSLLCAFS--TFEEYLDLFLT 136 (565)
Q Consensus 110 ---------------------------------------------------~~~~~if~ral~~~~~--~~~~~~~~~~~ 136 (565)
+..-.+|+.+++..+. .|..||.+++.
T Consensus 248 ~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE 327 (568)
T KOG2396|consen 248 QKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLE 327 (568)
T ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0011233333332222 34556666666
Q ss_pred HHHHHHHHh------hcccc----------chhh-------------------hh--------------HHH-------H
Q 008442 137 RIDGLRRRI------LFSGE----------VEGV-------------------LD--------------YSL-------I 160 (565)
Q Consensus 137 ~~~~~~r~~------~~~~~----------~e~~-------------------~~--------------~~~-------~ 160 (565)
.++.++-.. ++.+. .+.+ +. +.. .
T Consensus 328 ~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~ 407 (568)
T KOG2396|consen 328 RFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDF 407 (568)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchh
Confidence 555444211 11100 0000 00 000 0
Q ss_pred HHHHHHHHHHHHhhhc-------------------------------CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008442 161 RETFQRASDYLSEQMK-------------------------------NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (565)
Q Consensus 161 ~~~~~~a~~~l~~~~~-------------------------------~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~ 209 (565)
.-.|......+...+. ..+....|-..|.++..+.+ ....||++|.+.
T Consensus 408 q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~-~~~~ark~y~~l 486 (568)
T KOG2396|consen 408 QMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESG-GYKKARKVYKSL 486 (568)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhc-chHHHHHHHHHH
Confidence 0011111111111100 01111122234566666666 788999999999
Q ss_pred HHHccchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHH
Q 008442 210 LKISGAMLEAWQSYISMEIELD--HINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (565)
Q Consensus 210 l~~~~~~~~lw~~yi~~e~~~~--~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~ 285 (565)
....|.+..+....|+||...- ++.++|.+|++|+. .|. ...++|..|+.||+.+|..+++..+..+++..++
T Consensus 487 ~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~-~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 487 QELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR-EFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred HhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH-HhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhC
Confidence 9999999999999999997542 59999999999987 455 4559999999999999999999988888876664
No 14
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.67 E-value=8.3e-16 Score=149.61 Aligned_cols=102 Identities=28% Similarity=0.474 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC-cHHHHHH
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG-SEDICHA 259 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~-~~~i~~~ 259 (565)
...+|..+|.+|..++++.+.|+.||+.+++.++.+..+|+.|++|+...++.++||.+|++++.. ++... ...||..
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKK 112 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHH
Confidence 345788999999998879989999999999999999999999999999999999999999999984 44444 5679999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 260 WLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 260 ~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
|++||..||+++++.++..++...
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999877666543
No 15
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.65 E-value=6.1e-14 Score=135.61 Aligned_cols=269 Identities=15% Similarity=0.192 Sum_probs=196.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh-----hHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-----NVV 77 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~-----~~~ 77 (565)
+.|+.||+.+.-.|. -..+|..|+.-|....++..+..+|-|||... .+.+||..|+.|+.+..... ..+
T Consensus 60 ~~re~yeq~~~pfp~----~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i 134 (660)
T COG5107 60 AEREMYEQLSSPFPI----MEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKI 134 (660)
T ss_pred HHHHHHHHhcCCCcc----ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhh
Confidence 579999999998888 56799999999998889999999999999876 77999999999998866332 347
Q ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHH
Q 008442 78 RDVYSRATKNC---PWVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFST---FEEYLDLFLTRIDGLRR 143 (565)
Q Consensus 78 ~~v~erAl~~~---p~~~~lW~~yi~~le~--------~~~~~~~~~~if~ral~~~~~~---~~~~~~~~~~~~~~~~r 143 (565)
.++||-.+... |.+..+|..|..++|. .+..++.+|.+|.|||..|+.. .|.-...|...++-+..
T Consensus 135 ~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~Ta 214 (660)
T COG5107 135 YEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITA 214 (660)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 78888888722 7888999999998875 2346788999999999988763 23223334444444433
Q ss_pred HhhccccchhhhhHHHHHHHHHHHHHHHHhhhc------------CCchhHHHHHHHHHHHHHcC----CChH--HHHHH
Q 008442 144 RILFSGEVEGVLDYSLIRETFQRASDYLSEQMK------------NTDGLLRLYAYWAHLEQSMG----KDMV--SARGV 205 (565)
Q Consensus 144 ~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~------------~~~~~~~l~~~~a~~e~~~~----~~~~--~ar~i 205 (565)
+...++.. ..+..+|..+++..... ..+. .......-|..|+++|...+ +++- +..-+
T Consensus 215 rKfvge~s---p~ym~ar~~yqe~~nlt-~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~ 290 (660)
T COG5107 215 RKFVGETS---PIYMSARQRYQEIQNLT-RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYI 290 (660)
T ss_pred HHHhcccC---HHHHHHHHHHHHHHHHh-ccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHH
Confidence 33322221 24555666666543322 1111 11123345899999997632 2332 34458
Q ss_pred HHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHH
Q 008442 206 WERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (565)
Q Consensus 206 ~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~ 285 (565)
|+.++..++-..++|..|..+....++-++|.....+++. .+ | .+-..+.+.+....+.+.+..++++|...+.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~-~s----p-sL~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE-MS----P-SLTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc-CC----C-chheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999976 21 2 3666677778888889999999999987775
Q ss_pred H
Q 008442 286 E 286 (565)
Q Consensus 286 ~ 286 (565)
.
T Consensus 365 r 365 (660)
T COG5107 365 R 365 (660)
T ss_pred H
Confidence 3
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=1e-14 Score=144.41 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC--eEEEEee
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG--KKLSIAR 466 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g--~~l~v~~ 466 (565)
...+|||+|||.++++++|+++|++||.|..++|+.++.+|+++|||||+|.+.++|++||. +|+..+.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999998899999999999999999999998 89998866 6899999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876543
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.5e-14 Score=128.97 Aligned_cols=87 Identities=25% Similarity=0.442 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..=+||||+-|++++++..|+..|+.||.|+.|+||.|+.||+++|||||+|+++-+..+|-+ .+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 445899999999999999999999999999999999999999999999999999999999998 7999999999999987
Q ss_pred CCCCCCCC
Q 008442 468 NPKQRKDS 475 (565)
Q Consensus 468 ~~~~~~~~ 475 (565)
.....+..
T Consensus 179 RgRTvkgW 186 (335)
T KOG0113|consen 179 RGRTVKGW 186 (335)
T ss_pred cccccccc
Confidence 66554443
No 18
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.8e-14 Score=120.93 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
+..++|||+|||.++.+.+|+.+|.+||.|..|.+...+ ...+||||+|+++-+|+.||. .+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999985532 345899999999999999998 7999999999999996
Q ss_pred CC
Q 008442 468 NP 469 (565)
Q Consensus 468 ~~ 469 (565)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 54
No 19
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.5e-14 Score=115.15 Aligned_cols=79 Identities=19% Similarity=0.413 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
+..+|||||||++.++|+.|.++|+.||.|+.|-+-.|+.+-.+.|||||+|.+.++|..|+. +++..++.++|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 456999999999999999999999999999999999999888899999999999999999999 8999999999999884
No 20
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.5e-12 Score=135.13 Aligned_cols=429 Identities=19% Similarity=0.184 Sum_probs=229.7
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHh-cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQS-SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~-~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (565)
..||.++...+. +...|+.|.-+.-. .+-+.++..+|-|++..||...+||..|+--++++......+...++++
T Consensus 333 l~~eR~~~E~~~----~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ 408 (881)
T KOG0128|consen 333 LIEERAVAEMVL----DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKD 408 (881)
T ss_pred HHHHHHHHhccc----cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHH
Confidence 467888888776 67789998887543 2345678889999999999999999999977777776777788888888
Q ss_pred HHcCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcccccHHHHHHH-HHHHHHHHHHHhhccccchhhhhHH
Q 008442 85 TKNCPWVGELWVRSLLSLERSR-----ASEEEISTVFEKSLLCAFSTFEEYLDL-FLTRIDGLRRRILFSGEVEGVLDYS 158 (565)
Q Consensus 85 l~~~p~~~~lW~~yi~~le~~~-----~~~~~~~~if~ral~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~e~~~~~~ 158 (565)
+... ..++..|+.++-+.. ...+.++..|..|..... .+... |-+.+.++. .+ ..++
T Consensus 409 ls~~---~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt----~~~~~~~Dt~~~~~q-------~w---A~~E 471 (881)
T KOG0128|consen 409 LSMT---VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELT----ELYGDQLDTRTEVLQ-------LW---AQVE 471 (881)
T ss_pred HHHH---HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH----HHhhhhhhhHHHHHH-------HH---HHHH
Confidence 8742 246677766444432 235667788888763110 11111 111111110 00 0000
Q ss_pred -HHHHHHHHHHHHHHhhhcCCchhHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccc-hHHHHHHHHHHHHHcCCh
Q 008442 159 -LIRETFQRASDYLSEQMKNTDGLLR-LYAYWAHLEQSMGKDMVSARGVWERLLKI--SGA-MLEAWQSYISMEIELDHI 233 (565)
Q Consensus 159 -~~~~~~~~a~~~l~~~~~~~~~~~~-l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~-~~~lw~~yi~~e~~~~~~ 233 (565)
.+....+.|+.+....+......+. .|+.|+++|..++ +...||.++.+++.. .++ ...+...|..||+..|.+
T Consensus 472 ~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g-~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl 550 (881)
T KOG0128|consen 472 ASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYG-DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTL 550 (881)
T ss_pred HHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhC-CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccH
Confidence 0111223333333333333334444 8999999999999 999999999999987 343 467899999999999998
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHH-HHHHHHHHHhCCHHH------HHHHHHHHhhHHHHHHHHHHHhhhccCCcchhhh
Q 008442 234 NEARSIYKRCYSKRFTGTGSEDIC-HAWLRFEREYGTLED------FDHSVQKVTPRLEELRLFRSQQESKSLPESADQK 306 (565)
Q Consensus 234 ~~aR~i~~~al~~~~~~~~~~~i~-~~~~~fE~~~G~~~~------~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (565)
+.+-..-.+-+.+ +. ..+-.-|..--++.. ......+.....++++--+ ...++-.+ + +.
T Consensus 551 ~~~~~~~~~~~pr---------~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~--~g~k~h~q-~-~~ 617 (881)
T KOG0128|consen 551 ESFDLCPEKVLPR---------VYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPK--RGFKAHEQ-P-QQ 617 (881)
T ss_pred HHHhhhHHhhcch---------hhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCcc--cccccccc-c-hh
Confidence 8766554444321 11 000011111000000 0001111111111110000 00000000 0 00
Q ss_pred hhhccccccccc------cCCCCcc-ccCCcccccccCCCC--CCCCCchhhhhhccccccccCCCc----------ccc
Q 008442 307 EHSVKKTGREKR------KSDSNIS-YEQSPAKRQKHAPQK--PKKVHDKEKRQVQNLAEENEGRET----------KQT 367 (565)
Q Consensus 307 ~~~~~~~~~~kr------k~~~~~~-~~~~~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 367 (565)
+.........+. +.-.... ......++.+.+..+ |.......+.+++|+.......+. +..
T Consensus 618 ~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~v 697 (881)
T KOG0128|consen 618 QKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVV 697 (881)
T ss_pred hhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhH
Confidence 000000000000 0000000 000000000000000 001112234455555432111110 000
Q ss_pred c------ccCCC-----------CCCcccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC
Q 008442 368 V------EEQPK-----------KQPIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTG 430 (565)
Q Consensus 368 ~------~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 430 (565)
. ..++. ....+-.. +....-....|||.|.|+..|.+.++.+++.+|.+.+.++++.+ .|
T Consensus 698 qi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f--~d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~g 774 (881)
T KOG0128|consen 698 QIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF--RDSCFFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AG 774 (881)
T ss_pred HHHHHhhccccccceeeEeecCCchhhhhhh--hhhhhhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-cc
Confidence 0 00000 00000000 01112336789999999999999999999999999999999987 89
Q ss_pred CcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCCCC
Q 008442 431 KSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPKQR 472 (565)
Q Consensus 431 ~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~~~ 472 (565)
+++|.|||.|.++.++..++. .+...+.-+.+.|..++|...
T Consensus 775 kpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 775 KPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 999999999999999999987 677777777788888877433
No 21
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.54 E-value=1.1e-12 Score=127.06 Aligned_cols=230 Identities=18% Similarity=0.242 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHhcC-----C--chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHH
Q 008442 23 FQQYMIYLKYEQSSG-----D--PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~-----~--~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW 95 (565)
...|+.||+||...+ . ..++.-+|+.++...|.++++|.+|..|+.... +.+.+..+.+|++..||. |.
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~is-d~q~al~tv~rg~~~sps---L~ 336 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGIS-DKQKALKTVERGIEMSPS---LT 336 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcc-HHHHHHHHHHhcccCCCc---hh
Confidence 346999999998764 2 257889999999999999999999999987544 667788888888888774 66
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc------------------cccHHH--------HHHHHHHHHHHHHHHhhccc
Q 008442 96 VRSLLSLERSRASEEEISTVFEKSLLCA------------------FSTFEE--------YLDLFLTRIDGLRRRILFSG 149 (565)
Q Consensus 96 ~~yi~~le~~~~~~~~~~~if~ral~~~------------------~~~~~~--------~~~~~~~~~~~~~r~~~~~~ 149 (565)
..|....|. ..+.+.+...|++|++.. +....+ +.-+|-+++++++|.
T Consensus 337 ~~lse~yel-~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~----- 410 (660)
T COG5107 337 MFLSEYYEL-VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK----- 410 (660)
T ss_pred eeHHHHHhh-cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH-----
Confidence 666664444 566788888888887521 100011 112223333333322
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 150 EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 150 ~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
..++.+|.+|.++...- + ..+.++++-|-+|....+|...|-.||+-++..+|+...+-..|..|...
T Consensus 411 -----~Gl~aaR~~F~k~rk~~---~----~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 411 -----RGLEAARKLFIKLRKEG---I----VGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred -----hhHHHHHHHHHHHhccC---C----CCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 14556777777666531 1 12345666677777776799999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (565)
.++-++||.+|+.++.+ ...+.-..||+.|+++|-.+|++..+-.
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 99999999999999884 3334456799999999999999987763
No 22
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4.9e-14 Score=118.86 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
-+++||||||+..+++.+|+..|..||.|.+|-|-.. +.|||||+|+++.+|..|+. |+|..|+|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999988553 46999999999999999998 99999999999999986
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5544
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.53 E-value=4.7e-14 Score=143.39 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..+++|||+|||+++++++|+++|++||.|.+++|+.|+.||.++|||||+|.+.++|..|+. |||..|+|++|.|.+.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 445689999999999999999999999999999999999899999999999999999999998 8999999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
.++.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7764
No 24
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.53 E-value=4.6e-12 Score=128.22 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=184.2
Q ss_pred hhhHHHHHHHhcCC----CCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH
Q 008442 3 NARAHLEEQISRQD----LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (565)
Q Consensus 3 ~~R~~~E~~l~~~~----~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~ 78 (565)
..|+.||..|.+.. ..+..++..|+.|++|+...|+.+++..+|+||+..|.+..++|+.|+.|++.. +..+.+.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~-~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS-GDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc-CchhHHH
Confidence 57899999997752 236668889999999999999999999999999999999999999999999988 4777789
Q ss_pred HHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhH
Q 008442 79 DVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (565)
Q Consensus 79 ~v~erAl~-~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~ 157 (565)
.++.+|.+ ++|..+.|.+.|.. ++.+.+++..++.++++..+.-++ ++.+.+.++..++|+.-....
T Consensus 352 ~~~~~~~~i~~k~~~~i~L~~a~-f~e~~~n~~~A~~~lq~i~~e~pg----~v~~~l~~~~~e~r~~~~~~~------- 419 (577)
T KOG1258|consen 352 NVLARACKIHVKKTPIIHLLEAR-FEESNGNFDDAKVILQRIESEYPG----LVEVVLRKINWERRKGNLEDA------- 419 (577)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHH-HHHhhccHHHHHHHHHHHHhhCCc----hhhhHHHHHhHHHHhcchhhh-------
Confidence 99999998 56888889999987 666788999999999998864433 334444445444443321111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC---ChH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HIN 234 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~---~~~ 234 (565)
.. .............+..-...++..++++-.....+.+.|+.++..++...|++-.+|+.+++|+..+. +.+
T Consensus 420 ---~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d 495 (577)
T KOG1258|consen 420 ---NY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYD 495 (577)
T ss_pred ---hH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence 10 11111111111122233446777888888888889999999999999999999999999999998765 333
Q ss_pred HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 008442 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (565)
Q Consensus 235 ~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (565)
-.--+....+......+.+..--..|++|-.-+|+.....+..
T Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~ 538 (577)
T KOG1258|consen 496 LLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDE 538 (577)
T ss_pred hhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhc
Confidence 3333333333321122233233355999999999765554443
No 25
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.9e-14 Score=125.55 Aligned_cols=78 Identities=26% Similarity=0.458 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
-.+||||||++.+..++|+++|++||+|.+..|+.|+.+|+|||||||+|.|.++|.+|++--.-.|+||+..+.+|-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 468999999999999999999999999999999999999999999999999999999999865567999998887763
No 26
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.52 E-value=4.5e-12 Score=125.65 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=169.4
Q ss_pred HHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC
Q 008442 9 EEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88 (565)
Q Consensus 9 E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~ 88 (565)
++.|..+|+ +.+.|...|...... .+++++..||+.+..+|.++..|..|+.-+... ++.+.+..+|.|||...
T Consensus 10 ~~rie~nP~----di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s-kdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPY----DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS-KDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCc----cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 677888998 999999999955444 889999999999999999999999999866544 48888999999999865
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHh-cccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 89 PWVGELWVRSLLSLERSRASEEEISTV----FEKSLL-CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 89 p~~~~lW~~yi~~le~~~~~~~~~~~i----f~ral~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
- +-+||..||.++.+..+.....+.. |+=++. +..+ -....+|..|+++++---..+ .++.-..+..+|.+
T Consensus 84 L-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~d--i~s~siW~eYi~FL~~vea~g-k~ee~QRI~~vRri 159 (656)
T KOG1914|consen 84 L-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMD--IKSYSIWDEYINFLEGVEAVG-KYEENQRITAVRRI 159 (656)
T ss_pred h-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccC--cccchhHHHHHHHHHcccccc-cHHHHHHHHHHHHH
Confidence 3 3689999999887766655544444 444443 2221 012356777776665222222 22222356678899
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc------------CCChHHHHHHHHHHHHH-------cc----------
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM------------GKDMVSARGVWERLLKI-------SG---------- 214 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~------------~~~~~~ar~i~e~~l~~-------~~---------- 214 (565)
|++|+.. ..+....||.-|..||... ..++..||.++...... .+
T Consensus 160 Yqral~t------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e 233 (656)
T KOG1914|consen 160 YQRALVT------PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDE 233 (656)
T ss_pred HHHHhcC------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHH
Confidence 9987663 1345667899888888643 22455788887765542 11
Q ss_pred -chHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCC
Q 008442 215 -AMLEAWQSYISMEIELDH--------INEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (565)
Q Consensus 215 -~~~~lw~~yi~~e~~~~~--------~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~ 269 (565)
.++++|+.||+||.+.+- ..+..-+|+.+|.- ....++||-.+..|-...++
T Consensus 234 ~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~---l~~~peiWy~~s~yl~~~s~ 294 (656)
T KOG1914|consen 234 IQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY---LGYHPEIWYDYSMYLIEISD 294 (656)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhhH
Confidence 146799999999987642 24556678899862 34577999999888777666
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.51 E-value=5.8e-14 Score=139.16 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.|+.+++++|||||+|.++++|..||. |++..|.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567999999999999999999999999999999999998899999999999999999999997 89999999999999
Q ss_pred ecCCC
Q 008442 466 RSNPK 470 (565)
Q Consensus 466 ~a~~~ 470 (565)
++.|.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88653
No 28
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=6.9e-14 Score=106.01 Aligned_cols=69 Identities=33% Similarity=0.627 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 394 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
|||+|||.++++++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|..|+. +++..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 489999999999999999999998 899999999885
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6e-14 Score=124.70 Aligned_cols=82 Identities=29% Similarity=0.434 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|-|.|||.++++.+|+++|.+||.|..+.|.+|+.||.+||||||.|.+.++|.+||. |||.-.+.--|.|+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 478999999999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 30
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=8.5e-14 Score=120.28 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
....-.+|-|-||.+-++.++|+.+|++||.|-+|.|+.|+.|+.++|||||-|.+..+|+.|+. |+|.+|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33445789999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ecCCC
Q 008442 466 RSNPK 470 (565)
Q Consensus 466 ~a~~~ 470 (565)
.|.-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 98643
No 31
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.49 E-value=1e-13 Score=140.88 Aligned_cols=81 Identities=23% Similarity=0.479 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
..+|||+|||+++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.++++|..||. +++..|.|++|.|.++.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4799999999999999999999999999999999998899999999999999999999997 899999999999999876
Q ss_pred CC
Q 008442 470 KQ 471 (565)
Q Consensus 470 ~~ 471 (565)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 54
No 32
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1.6e-13 Score=126.43 Aligned_cols=76 Identities=25% Similarity=0.402 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||+.+++++|+++|+.||.|.+|+|+.++ .++|||||+|.++++|..||.|+|..|.|++|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999875 257999999999999999999999999999999999764
No 33
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.48 E-value=7.4e-13 Score=128.94 Aligned_cols=97 Identities=15% Similarity=0.296 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~ 104 (565)
+|..|++|....+..+.++.+|++|+...+.+..+|+.|+.....+.++...++.|||++++.+|.+..+|..|+.+|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 68888888888777888888888888777777888888887666656777778888888888888888888888876654
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 008442 105 SRASEEEISTVFEKSLLC 122 (565)
Q Consensus 105 ~~~~~~~~~~if~ral~~ 122 (565)
.++.+.+|.+|+||+..
T Consensus 83 -~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 83 -LNDINNARALFERAISS 99 (280)
T ss_dssp -TT-HHHHHHHHHHHCCT
T ss_pred -hCcHHHHHHHHHHHHHh
Confidence 56677788888877753
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6.3e-13 Score=120.35 Aligned_cols=77 Identities=29% Similarity=0.403 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
.++.+|||+||++.+++++|+++|+.||.|.+|+|+.+. ..+|||||+|.+++++..|+.|+|..|.|++|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 356899999999999999999999999999999999874 45689999999999999999999999999999998864
No 35
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.2e-14 Score=121.40 Aligned_cols=83 Identities=25% Similarity=0.453 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 385 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
+..+.++.-|||||||++.|+.||--+|++||+|.+|.+++|+.||+|+||||+.|++.-+..-|+. +||..|.||.|+
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 5567888999999999999999999999999999999999999999999999999999998888887 899999999999
Q ss_pred Eeec
Q 008442 464 IARS 467 (565)
Q Consensus 464 v~~a 467 (565)
|...
T Consensus 109 VDHv 112 (219)
T KOG0126|consen 109 VDHV 112 (219)
T ss_pred eeec
Confidence 9775
No 36
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=8.8e-13 Score=99.84 Aligned_cols=69 Identities=39% Similarity=0.657 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 394 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
|||+|||+++++++|+++|+.||.|..+.+..++. |.++|+|||+|.++++|..|+. .++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999875 9999999999999999999999 577999999874
No 37
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.6e-13 Score=119.56 Aligned_cols=95 Identities=23% Similarity=0.389 Sum_probs=86.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...+|||||+|..++++.-|...|-+||.|.+|.++.|-.++++||||||+|...++|.+||. ||+.+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 446899999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCCCCCCcc
Q 008442 468 NPKQRKDSSGERAPTE 483 (565)
Q Consensus 468 ~~~~~~~~~~~~~~~~ 483 (565)
.|.+-+..+...-|..
T Consensus 88 kP~kikegsqkPvWAD 103 (298)
T KOG0111|consen 88 KPEKIKEGSQKPVWAD 103 (298)
T ss_pred CCccccCCCCCCcccC
Confidence 9988776665544543
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.8e-12 Score=115.64 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.++|+|||||++..+++++|++.|++||.|.+|||..++ ||+||.|.+.++|..||. +|+.+|.|+.+++.+-
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 468999999999999999999999999999999999875 899999999999999997 8999999999999986
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
+..
T Consensus 236 Ke~ 238 (321)
T KOG0148|consen 236 KEG 238 (321)
T ss_pred ccC
Confidence 543
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.41 E-value=8.8e-13 Score=137.67 Aligned_cols=84 Identities=11% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||+++++++|+.+|+.||.|.+++|+.++.+|+++|||||+|.+.++|..|+. ||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998889999999999999999999998 89999999999999997
Q ss_pred CCCCC
Q 008442 469 PKQRK 473 (565)
Q Consensus 469 ~~~~~ 473 (565)
+++..
T Consensus 283 ~pP~~ 287 (612)
T TIGR01645 283 TPPDA 287 (612)
T ss_pred CCccc
Confidence 65443
No 40
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.6e-13 Score=122.92 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|+|+|+|+...+.||+.+|.+||.|.+|.|+.+ ..-|||||||+|+++++|++|-. ++|..|.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 44579999999999999999999999999999999986 35589999999999999999997 8999999999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.++
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 665
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.40 E-value=8.9e-13 Score=137.63 Aligned_cols=79 Identities=28% Similarity=0.516 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||+++++++|+++|..||.|.+|+|+.|+.+|+++|||||+|.++++|+.|+. +||..|+|++|.|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45899999999999999999999999999999999999999999999999999999999997 89999999999998653
No 42
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.1e-12 Score=127.45 Aligned_cols=77 Identities=21% Similarity=0.429 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHH-cCCcccCCeEEEEee
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDD--EHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~--~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
...+||||||++.+++++|+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+||. |||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 357999999999999999999999999999999994 477 89999999987 67999998 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
|+|.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 43
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.36 E-value=8.1e-10 Score=109.20 Aligned_cols=136 Identities=23% Similarity=0.415 Sum_probs=112.4
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc-------------C-------CchhHHHHHHHHHhcCCCCHHHHH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-------------G-------DPGRVQLLYERAITDFPVSSDLWL 61 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~-------------~-------~~~~~~~lyERal~~~p~~~~lW~ 61 (565)
.+.|..||..|.+-.. ...-++.||++|... + -+.+|..+|.+|+..++.++.||.
T Consensus 34 vk~Rr~fE~kL~rr~~----~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~ 109 (568)
T KOG2396|consen 34 VKKRRDFELKLQRRTL----SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWL 109 (568)
T ss_pred HHHHHHHHHHHccCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4689999999988765 677899999998642 1 135788999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc---cHHHHHHHHHHHH
Q 008442 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLTRI 138 (565)
Q Consensus 62 ~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~---~~~~~~~~~~~~~ 138 (565)
+|+.|..+.. ....+-.||..+|...|.++.||+..+.++-..+.+++.+|.+|.++|...+. .|.+|..+.+.+.
T Consensus 110 ~yi~f~kk~~-~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 110 SYIAFCKKKK-TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHHHHhc-chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 9999988665 46678899999999999999999998875544456699999999999997654 5677777778877
Q ss_pred HHHH
Q 008442 139 DGLR 142 (565)
Q Consensus 139 ~~~~ 142 (565)
.-++
T Consensus 189 ~Kl~ 192 (568)
T KOG2396|consen 189 EKLR 192 (568)
T ss_pred HHHH
Confidence 7665
No 44
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.35 E-value=6.3e-12 Score=125.20 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
....+|||+|||++++..+|+++|..||.|+..+|......++..+||||+|.+.+.++.||..+...|+|++|.|+.-.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 45567999999999999999999999999999888664334555599999999999999999988888999999999987
Q ss_pred CCCCCCCC
Q 008442 469 PKQRKDSS 476 (565)
Q Consensus 469 ~~~~~~~~ 476 (565)
+.....+.
T Consensus 366 ~~~~g~~~ 373 (419)
T KOG0116|consen 366 PGFRGNGN 373 (419)
T ss_pred cccccccc
Confidence 76554443
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.33 E-value=1.1e-11 Score=129.41 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDV--GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.++|||+|||.++++++|+++|+.| |.|.+|.++ ++||||+|.+.++|.+|+. ||+..|+|+.|.|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4789999999999999999999999 999998765 3699999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.|+..
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87643
No 46
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.3e-12 Score=102.71 Aligned_cols=84 Identities=25% Similarity=0.377 Sum_probs=79.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 385 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
|.+..++-.|||+++...+++++|...|..||+|+.|.+-.|+.||..+|||.|+|.+...|++|+. +||..|.|.+|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4456778899999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EeecC
Q 008442 464 IARSN 468 (565)
Q Consensus 464 v~~a~ 468 (565)
|.++-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 99984
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=1.6e-12 Score=110.48 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
....|||||||+..++++-|.++|-++|+|.+++++.|+.++..+|||||+|.++++|+-|++ ||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999 7988899999999998
Q ss_pred C
Q 008442 468 N 468 (565)
Q Consensus 468 ~ 468 (565)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 48
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.31 E-value=7.5e-12 Score=131.85 Aligned_cols=82 Identities=37% Similarity=0.594 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||..+++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+||.++|..+.|++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999876
Q ss_pred CC
Q 008442 468 NP 469 (565)
Q Consensus 468 ~~ 469 (565)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 43
No 49
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=2.1e-11 Score=92.38 Aligned_cols=71 Identities=35% Similarity=0.609 Sum_probs=65.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
+|||+|||..++.++|+.+|..||.|..+.+..++ +.++|+|||+|.+.+.|..|+. +++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 7789999999999999999998 79899999998873
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.4e-11 Score=110.30 Aligned_cols=84 Identities=20% Similarity=0.455 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.....|.|.-||.++|+++++.+|...|+|++|.+++|+.+|.+-||+||.|.++.+|++|+. +||..+..+.|+|+++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345679999999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
+|...
T Consensus 119 RPSs~ 123 (360)
T KOG0145|consen 119 RPSSD 123 (360)
T ss_pred cCChh
Confidence 99765
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=3.2e-11 Score=92.50 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..++-|||.|||+.+|.++..++|..||.|..|+|-..+ ..+|-|||.|++..+|..|+. |+|..++++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 446889999999999999999999999999999997644 458999999999999999998 8999999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
.|..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 7654
No 52
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=1.9e-11 Score=131.97 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=74.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
+|||+|||.++++++|+++|+.||.|.+|+|++|+.|++++|||||+|.+.++|++|+. +++..|.|++|+|.++...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 79999999999999999999999999999999999889999999999999999999997 8999999999999987543
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.7e-11 Score=118.17 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc-CCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF-LGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~-~g~~l~v~~ 466 (565)
..+|-||||.||.++.|++|..+|+..|.|-++||+.|+.+|.+||||||+|.+.+.|+.||. +|+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999998 899987 588888877
Q ss_pred cCC
Q 008442 467 SNP 469 (565)
Q Consensus 467 a~~ 469 (565)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 643
No 54
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.26 E-value=1.6e-11 Score=128.21 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC-CeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL-GKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~-g~~l~v~~ 466 (565)
...++|||+|||.++++++|+++|+.||.|.+++|+.| .+|+++|||||+|.+.++|+.||. ||+..|. |+.|.|..
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34699999999999999999999999999999999999 599999999999999999999998 8988874 77776665
Q ss_pred cC
Q 008442 467 SN 468 (565)
Q Consensus 467 a~ 468 (565)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 55
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.5e-11 Score=111.07 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
+....|||+.|...++-++|++.|.+||+|.+++|++|..|++++|||||.|.+.++|+.||. |||.=|++|.|+-.+|
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 346789999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
..++.
T Consensus 140 TRKp~ 144 (321)
T KOG0148|consen 140 TRKPS 144 (321)
T ss_pred ccCcc
Confidence 66553
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=6.4e-12 Score=112.88 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=81.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 386 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
....++|.|||-.||.+..+.+|.++|-+||.|.+..+..|+.|+.|+|||||.|.++.++++||. |||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 345789999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
...+|+..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99887643
No 57
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.25 E-value=3.8e-11 Score=126.52 Aligned_cols=79 Identities=22% Similarity=0.474 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||..+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|..|+. |+|..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999998889999999999999999999997 899999999999999863
No 58
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.24 E-value=4.2e-11 Score=128.03 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||..+++++|+++|..||.|..+.|+.+..+|.++|||||+|.+.++|..|+. |+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999998899999999999999999999997 8999999999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 59
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=8.8e-12 Score=119.57 Aligned_cols=86 Identities=29% Similarity=0.458 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcc-cCC--eEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM-FLG--KKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~-~~g--~~l~v 464 (565)
.++++||||-|+..++|.+++++|++||.|++|.|.++. .|.+||||||.|.+.+.|..||+ ||+.. +.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999997 89999999999999999999998 88754 654 59999
Q ss_pred eecCCCCCCCC
Q 008442 465 ARSNPKQRKDS 475 (565)
Q Consensus 465 ~~a~~~~~~~~ 475 (565)
.+|++.+.+..
T Consensus 201 kFADtqkdk~~ 211 (510)
T KOG0144|consen 201 KFADTQKDKDG 211 (510)
T ss_pred EecccCCCchH
Confidence 99999877544
No 60
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=2e-11 Score=122.42 Aligned_cols=82 Identities=32% Similarity=0.552 Sum_probs=78.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+++..|+. +||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999998 8999999999999998765
Q ss_pred CCC
Q 008442 471 QRK 473 (565)
Q Consensus 471 ~~~ 473 (565)
+.+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 61
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=3.8e-11 Score=129.59 Aligned_cols=80 Identities=31% Similarity=0.520 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
...+|||+|||..+++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|+. +|+..++|++|.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 45789999999999999999999999999999999994 89999999999999999999997 89999999999999987
Q ss_pred CC
Q 008442 469 PK 470 (565)
Q Consensus 469 ~~ 470 (565)
++
T Consensus 363 ~k 364 (562)
T TIGR01628 363 RK 364 (562)
T ss_pred Cc
Confidence 64
No 62
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=5.6e-11 Score=89.72 Aligned_cols=70 Identities=36% Similarity=0.609 Sum_probs=65.2
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 396 LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 396 V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
|+|||..+++++|+.+|..||.|..+.+..++.++.++|+|||+|.+.++|..|+. +++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887778999999999999999999998 78899999998873
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=7.5e-11 Score=113.86 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
-.-|||+||+.++|++.|+++|..||.|..|..++| ||||.|.+.++|.+|++ +|++.|+|..|.|.+|+|
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 468999999999999999999999999999887754 99999999999999998 899999999999999998
Q ss_pred CCCC
Q 008442 470 KQRK 473 (565)
Q Consensus 470 ~~~~ 473 (565)
...+
T Consensus 331 ~~k~ 334 (506)
T KOG0117|consen 331 VDKK 334 (506)
T ss_pred hhhh
Confidence 7553
No 64
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.19 E-value=7.9e-09 Score=113.05 Aligned_cols=239 Identities=13% Similarity=0.090 Sum_probs=151.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++-..|+.+|.... ..+.....|.....+....|+++.+...|+++|...|.+...|+.++..+. ..++.+.+...|+
T Consensus 312 ~A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~ 389 (615)
T TIGR00990 312 EAARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHH
Confidence 34567788876542 123355667777777777888888888888888888888888887776544 3446677888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHH---------HHHHHHh-hccccch
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRI-LFSGEVE 152 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~---------~~~~r~~-~~~~~~e 152 (565)
+|+...|....+|..... +....++.+++...|++++...+.....++.+-..+. ..+++.+ ......+
T Consensus 390 ~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQ-LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 888888888888877665 4444677888888888888765543333322211111 1111110 1111111
Q ss_pred hhh---hHHHHHHHHHHHHHHHHhhhcCCch----h---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHH
Q 008442 153 GVL---DYSLIRETFQRASDYLSEQMKNTDG----L---LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQS 222 (565)
Q Consensus 153 ~~~---~~~~~~~~~~~a~~~l~~~~~~~~~----~---~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~ 222 (565)
.+. ..-.....|++|+..+...+...+. . ..++.....+....+ ++++|..+|++++...|++...|..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 100 1111112345555555544432211 1 112222222333345 9999999999999999998889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 008442 223 YISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 223 yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+......|+++.|..+|++++.
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.19 E-value=2.9e-08 Score=108.60 Aligned_cols=186 Identities=9% Similarity=0.035 Sum_probs=118.6
Q ss_pred cCCchhHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHH
Q 008442 36 SGDPGRVQLLYERAITDF---PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~---p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~ 112 (565)
.+.++.+..+|++++... |.....|.....+.. ..++.+.+...|++|+...|.....|......+ ...++.+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~-~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMN-LELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHCCCHHHH
Confidence 456788999999999864 555566766665444 455788899999999999999888888776633 346889999
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHH
Q 008442 113 STVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (565)
Q Consensus 113 ~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (565)
...|++++...+.....+..+-..+.. . .++..+...|+++ +...+.....+...+.+.
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~--------~------g~~~~A~~~~~ka-------l~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFI--------K------GEFAQAGKDYQKS-------IDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH--------c------CCHHHHHHHHHHH-------HHcCccCHHHHHHHHHHH
Confidence 999999998765543333322222110 0 0222223333333 222233334455555555
Q ss_pred HHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...+ +++.|...|++++..+|+...+|..+.......|+++.|.+.|++++.
T Consensus 444 ~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 444 YKEG-SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 5656 666666666666666666666666666666666666666666666665
No 66
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=6.3e-11 Score=116.97 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC------C-cccCC
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN------K-QMFLG 459 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~------~-~~~~g 459 (565)
....+.||||.|||+++++++|.+.|++||.|..+.++.++.||.++|.|||.|.++..++.||.+- | ..|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 4456799999999999999999999999999999999999999999999999999999999999732 3 55899
Q ss_pred eEEEEeecCCCCC
Q 008442 460 KKLSIARSNPKQR 472 (565)
Q Consensus 460 ~~l~v~~a~~~~~ 472 (565)
|.|.|..+.++..
T Consensus 368 R~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 368 RLLKVTLAVTRKE 380 (678)
T ss_pred cEEeeeeccchHH
Confidence 9999999977643
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=2e-11 Score=114.36 Aligned_cols=75 Identities=29% Similarity=0.563 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
|+||||.+.+.+.++.|+..|.+||.|++|.+..|+.|++++|||||+|+-++.|+-|++ |||.+++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 899999999999999999999999999999999999999999999999999999999998 899999999999975
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.16 E-value=2.5e-10 Score=109.60 Aligned_cols=77 Identities=31% Similarity=0.563 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
.+.+||+|+|+++.+++|+.+|. +.|+|..|.+..|. +|++||||.|+|++++.+++|++ ||.+.+.||+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999995 67999999999996 99999999999999999999998 89999999999998753
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=114.48 Aligned_cols=79 Identities=35% Similarity=0.636 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||.++++++|..+|..||.|..+.++.++.+|.++|||||+|.+++++..|+. +++..+.|++|.|..+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999998 799999999999999654
No 70
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=2.8e-10 Score=86.67 Aligned_cols=73 Identities=40% Similarity=0.615 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
+|+|+|||..+++++|+++|..||.|..+.+..++ .+.++|+|||+|.+.++|..|+. +++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999876 44778999999999999999998 788889999998863
No 71
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.14 E-value=3.8e-08 Score=112.63 Aligned_cols=267 Identities=13% Similarity=0.057 Sum_probs=136.3
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.++...|. ....+...+......|+.+.+..++++.+...|.+..+|..++.... ..++.+.+..+|++
T Consensus 416 A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPE----LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHH
Confidence 44555555555443 22333333444444555555555555555555555555555544333 22344555555555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHH---------HHHHHh-hccccchh
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID---------GLRRRI-LFSGEVEG 153 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~---------~~~r~~-~~~~~~e~ 153 (565)
++...|.....|..... +....+..+++..+|++++...+.....+..+...+.. ++.+.. ........
T Consensus 491 a~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 569 (899)
T TIGR02917 491 ALSIEPDFFPAAANLAR-IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569 (899)
T ss_pred HHhhCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhH
Confidence 55555555555544443 22224455555555555554332222111111111100 000000 00000000
Q ss_pred h---hhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 008442 154 V---LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL 230 (565)
Q Consensus 154 ~---~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~ 230 (565)
. .........+.+++.++.......+....+|..++......+ +++.|..+|++++...|.+...|..++.+....
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 0 000001122344555554444434444566777777777777 888888888888887777777888888888788
Q ss_pred CChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 231 DHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 231 ~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
|+++.|..+|++++.. .+.....|..........|+.+.+...+...
T Consensus 649 ~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 649 KNYAKAITSLKRALEL---KPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888762 1223355555666666667766666555443
No 72
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.9e-10 Score=113.63 Aligned_cols=81 Identities=26% Similarity=0.411 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
.-+|+|.|||+.+...+|+.+|+.||.|..|.|++.+ .|+-+|||||.|....+|..|+. +|+..|+||+|.|.+|-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999876 67777999999999999999998 899999999999999987
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 654
No 73
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.4e-07 Score=103.45 Aligned_cols=270 Identities=10% Similarity=-0.006 Sum_probs=180.1
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.+...|+.++...|. +...|..........|+.+.+...|++++...|.+..+|...+..+. ..+..+.+..+|+
T Consensus 94 ~A~~~l~~~l~~~P~----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNVC----QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHH
Confidence 467789999998887 78889999888889999999999999999999999999999888654 4457778999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-ccHHHHHHHHHHH---------HHHHHHHh-hccccc
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLFLTR---------IDGLRRRI-LFSGEV 151 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~-~~~~~~~~~~~~~---------~~~~~r~~-~~~~~~ 151 (565)
+++...|.....|...+. + ...+..+++..++.+++...+ ........+...+ ...+++-. ...+..
T Consensus 169 ~~~~~~P~~~~a~~~~~~-l-~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLS-F-LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred HHHHhCCCCHHHHHHHHH-H-HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 999988988887755433 3 346888899999999887532 2111111100000 00111000 000100
Q ss_pred hhhhhHHH---HHHHHH----HHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHH
Q 008442 152 EGVLDYSL---IRETFQ----RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224 (565)
Q Consensus 152 e~~~~~~~---~~~~~~----~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi 224 (565)
........ ....+. +|...+...+...+.....+..++.+....+ +++.|...|++++...|++..+|..++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 00000000 001122 3556666655555556677888888888888 888999999999988888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 225 ~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
......|+++.|...|++++.. ..+.+ ..+..........|+.+.+...+++++..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~-~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTS-KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--Cccch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888889999999999988863 11111 22222223345678888777777766533
No 74
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.2e-07 Score=103.92 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=192.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.+...++..+...|. +...+...+-.....|+++.+...|++++...|.+...|...+..+.. .++.+.+...|+
T Consensus 60 ~A~~l~~~~l~~~p~----~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~-~g~~~~Ai~~l~ 134 (656)
T PRK15174 60 VGLTLLSDRVLTAKN----GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK-SKQYATVADLAE 134 (656)
T ss_pred hhHHHhHHHHHhCCC----chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 467788999999887 777787777777788999999999999999999999999998876554 447788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHH--HHHH------HHHHHHHhhccccchh-
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL--FLTR------IDGLRRRILFSGEVEG- 153 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~--~~~~------~~~~~r~~~~~~~~e~- 153 (565)
+|+...|....+|..... +....+..+++...+.+++...+.....+..+ .... ...++ +.+.......
T Consensus 135 ~Al~l~P~~~~a~~~la~-~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~-~~l~~~~~~~~ 212 (656)
T PRK15174 135 QAWLAFSGNSQIFALHLR-TLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLAR-ALLPFFALERQ 212 (656)
T ss_pred HHHHhCCCcHHHHHHHHH-HHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCcch
Confidence 999999999999998776 44557888999999998876544322222111 1110 00111 1111100000
Q ss_pred -hh----hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHH----HHHHHHHHHHHccchHHHHHHHH
Q 008442 154 -VL----DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS----ARGVWERLLKISGAMLEAWQSYI 224 (565)
Q Consensus 154 -~~----~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~----ar~i~e~~l~~~~~~~~lw~~yi 224 (565)
.. ..-.-..-+..|+..+...+...+....++..++.+....+ +.+. |...|++++...|++..+|..++
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg 291 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG-RSREAKLQAAEHWRHALQFNSDNVRIVTLYA 291 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 00 00001123566777776666655556677778888888888 6664 89999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 225 ~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
......|+++.|...|++++.. . +....++..+...-...|..+.+...+.+++
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l--~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLAT--H-PDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999973 2 2344556555666666788887777766654
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.10 E-value=8.4e-08 Score=109.78 Aligned_cols=269 Identities=13% Similarity=-0.028 Sum_probs=176.7
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...++..+...|. +...|...+......|+.+.+..+|++++...|.+...|..++..... .+..+.+..+|+
T Consensus 449 ~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 523 (899)
T TIGR02917 449 KALAAAKKLEKKQPD----NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ-EGNPDDAIQRFE 523 (899)
T ss_pred HHHHHHHHHHHhCCC----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 355667777776665 566788888888888888889999999998888888888888775443 446777888999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHH---------HHHHHHhh-ccccch
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRRIL-FSGEVE 152 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~---------~~~~r~~~-~~~~~e 152 (565)
+++...|.....|..+...+.. .+..+++...|++++...+.....++.+-..+. ..+++... .....+
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 9998888888888777764444 677888888888887655443332222211111 01111100 000001
Q ss_pred hhh---hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 153 GVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 153 ~~~---~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
.+. .......-+++|+..+...+...+.....+..++.+....+ +.++|..+|++++...|++...|..++.+...
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK-NYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 000 00011123455666665555444444556677778787778 99999999999999999989999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.|+++.|..+++.+.... +....++......-...|+.+.+...+.+++
T Consensus 682 ~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred cCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999987632 2223444444444445677776666665543
No 76
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=4.7e-10 Score=84.42 Aligned_cols=61 Identities=33% Similarity=0.471 Sum_probs=54.5
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 405 YEDLRRFFS----DVGGVSSIR-ILHDKFT--GKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 405 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
+++|+++|+ .||.|.++. ++.++.+ |.++|||||+|.+.++|..|+. |||..+.|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 999999995 7776656 8999999999999999999998 89999999998763
No 77
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3.2e-10 Score=109.06 Aligned_cols=85 Identities=24% Similarity=0.466 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c-CCcccCC--eEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K-NKQMFLG--KKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~-~~~~~~g--~~l~v 464 (565)
.+.-++|||.+|..++|.||+.+|++||.|.+|-|++|+.||.++|||||.|.+.++|.+|+. + |.+.|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 556789999999999999999999999999999999999999999999999999999999997 7 5667765 47889
Q ss_pred eecCCCCCC
Q 008442 465 ARSNPKQRK 473 (565)
Q Consensus 465 ~~a~~~~~~ 473 (565)
.+++..+.+
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 888765443
No 78
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.07 E-value=6.3e-10 Score=117.10 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+++|||+|||+ .+++++|+++|+.||.|.+|.|+.++ +|||||+|.+.++|..|+. ||+..|.|++|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4578999999998 69999999999999999999998763 5999999999999999998 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+...
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 79
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.04 E-value=2.2e-07 Score=108.70 Aligned_cols=266 Identities=13% Similarity=0.085 Sum_probs=180.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHH--------------
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLD-------------- 68 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~-------------- 68 (565)
++...|+.++...|. +...|..........|+++.+...|+++|...|.+...|...+....
T Consensus 369 eA~~~~~~Al~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 369 QAERLYQQARQVDNT----DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 366778888888876 67788888888889999999999999999999999887765443211
Q ss_pred ---------------------------HhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008442 69 ---------------------------KTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (565)
Q Consensus 69 ---------------------------~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~ 121 (565)
...+..+.+..+|++|+...|.+..+|......+ ...+..+++..+|++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~-~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL-RQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Confidence 0123556788999999999999888877766634 447889999999999997
Q ss_pred cccccHHHHHH--HHHH-------HHHHHHHHhhcc---ccchh---------h---hhHHHHHHHHHHHHHHHHhhhcC
Q 008442 122 CAFSTFEEYLD--LFLT-------RIDGLRRRILFS---GEVEG---------V---LDYSLIRETFQRASDYLSEQMKN 177 (565)
Q Consensus 122 ~~~~~~~~~~~--~~~~-------~~~~~~r~~~~~---~~~e~---------~---~~~~~~~~~~~~a~~~l~~~~~~ 177 (565)
..+.....+.. ++.. -...+.+ +... ..+.. . .+.-.....+++|+.++..
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~-l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNT-LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh-CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 55443322221 1110 0001100 0000 00000 0 0000011224556666653
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHH
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~ 257 (565)
.+....++..++.+....+ ++++|..+|++++...|++...|+..+.+....|+++.|+++|++++.. . +....++
T Consensus 599 ~p~~~~~~~~La~~~~~~g-~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~-p~~~~~~ 674 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRG-DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--A-NDSLNTQ 674 (1157)
T ss_pred CCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C-CCChHHH
Confidence 2334456677888888888 9999999999999999999999999999999999999999999998762 2 2233444
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 258 HAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 258 ~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
......-...|+.+.+...+++++.
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 4444444567888888888777764
No 80
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.03 E-value=8.5e-10 Score=116.09 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c--CCcccCCeEEEEeec
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K--NKQMFLGKKLSIARS 467 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~a 467 (565)
.++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+. + ++..|.|++|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 479999999999999999999999999999998853 4899999999999999997 3 778899999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.++
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 81
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.03 E-value=3.5e-08 Score=99.88 Aligned_cols=246 Identities=16% Similarity=0.128 Sum_probs=123.1
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+-..||++++-.|. -.++|....+..+..+-++++...|+||+..-|++....-..+. +....+..+.+...|+|
T Consensus 237 aiq~y~eAvkldP~----f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~-iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 237 AIQHYEEAVKLDPN----FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC-IYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHhhcCCCc----chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE-EEeccccHHHHHHHHHH
Confidence 34455555555543 44555555555555555556666666666665555443333221 11122345566666777
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHH----------HHHHHhhccccchh
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID----------GLRRRILFSGEVEG 153 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~e~ 153 (565)
||..-|+.+.-+......|.. .+++.++...|.+||...+........+-..+.+ |+.....+....+.
T Consensus 312 al~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence 776666666666555543432 4666777777777775332211111111111110 00000001111010
Q ss_pred hhhH---HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 008442 154 VLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL 230 (565)
Q Consensus 154 ~~~~---~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~ 230 (565)
..+. -.-+..+.+|+..+...+...+....-+......+...+ +++.|...|+++|..+|...+..-..+...+..
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g-~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG-DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh-hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 0111 111233444555554444444443344444444455555 677777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhcccCCCCcHHHHH
Q 008442 231 DHINEARSIYKRCYSKRFTGTGSEDICH 258 (565)
Q Consensus 231 ~~~~~aR~i~~~al~~~~~~~~~~~i~~ 258 (565)
|++..|..-|+.||. +..|-|+.-+.
T Consensus 470 Gni~~AI~sY~~aLk--lkPDfpdA~cN 495 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALK--LKPDFPDAYCN 495 (966)
T ss_pred CCcHHHHHHHHHHHc--cCCCCchhhhH
Confidence 777777777777764 23444544444
No 82
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.00 E-value=4.2e-10 Score=111.91 Aligned_cols=77 Identities=21% Similarity=0.472 Sum_probs=72.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
+||||||++++++++|+.+|++||.|..|.++.|..||.++|||||+|.+.++|..|+. +||..|-|+.|+|....-
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 39999999999999999999999999999999998899999999999999999999987 899999999999877643
No 83
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.98 E-value=6.5e-08 Score=98.00 Aligned_cols=262 Identities=14% Similarity=0.122 Sum_probs=157.7
Q ss_pred HHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC
Q 008442 10 EQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (565)
Q Consensus 10 ~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p 89 (565)
.++..+|. -.+.+..|.+..+..|..+.+..+|+.+|...|...+.|+..+.-+...+ +.+.+...|..||+..|
T Consensus 107 ~a~r~~~q----~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 107 LAIRKNPQ----GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNP 181 (966)
T ss_pred hhhhccch----HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCc
Confidence 34445544 56788889999899999999999999999999999999999988766554 56678899999999888
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--c--------HHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 008442 90 WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--T--------FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (565)
Q Consensus 90 ~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~--------~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~ 159 (565)
......... -.|.+..+.++++...|.+|+...+. . +...-++|+..-.|.+...+...-.+.+++...
T Consensus 182 ~l~ca~s~l-gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGn 260 (966)
T KOG4626|consen 182 DLYCARSDL-GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGN 260 (966)
T ss_pred chhhhhcch-hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHH
Confidence 543333222 23455567777788888888764321 1 111224555544444444444443333333322
Q ss_pred HH---HHHHHHHH----------------------------------HHHhhhcCCchhHHHHHHHHHHHHHcCCChHHH
Q 008442 160 IR---ETFQRASD----------------------------------YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSA 202 (565)
Q Consensus 160 ~~---~~~~~a~~----------------------------------~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~a 202 (565)
+. ..|.+|+. .+++.+...+....-+...+.-....| ++.+|
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-~V~ea 339 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG-SVTEA 339 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-chHHH
Confidence 22 22333333 333333333333333334444444455 66677
Q ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 203 RGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 203 r~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
..+|.++|..+|++.+.-.......++.|.++.|..+|.+++.- ++ .-..-+.-....-...|+++++-.+.+.++
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p--~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FP--EFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-Ch--hhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 77777777777777766666777777777777777777777652 11 111223333344455566666555555444
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=2.7e-09 Score=76.45 Aligned_cols=55 Identities=35% Similarity=0.624 Sum_probs=49.0
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 408 LRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 408 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
|..+|++||.|.++.+..+. +|+|||+|.+.++|..|+. +|+..+.|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987643 5899999999999999998 8999999999999875
No 85
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.96 E-value=1.3e-06 Score=90.23 Aligned_cols=86 Identities=7% Similarity=-0.036 Sum_probs=51.8
Q ss_pred hcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCHH
Q 008442 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG----ELWVRSLLSLERSRASEE 110 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~----~lW~~yi~~le~~~~~~~ 110 (565)
..++++.+...|++++...|.+..+|...+..+.. .+..+.+..++++++..-+... ..|......+ ...+..+
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~-~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR-RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY-LKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HHCCCHH
Confidence 45667777777777777777777777776665443 3355667777777776422221 2333333322 2346677
Q ss_pred HHHHHHHHHHhc
Q 008442 111 EISTVFEKSLLC 122 (565)
Q Consensus 111 ~~~~if~ral~~ 122 (565)
.+..+|++++..
T Consensus 125 ~A~~~~~~~l~~ 136 (389)
T PRK11788 125 RAEELFLQLVDE 136 (389)
T ss_pred HHHHHHHHHHcC
Confidence 777777777764
No 86
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.96 E-value=6.5e-09 Score=102.07 Aligned_cols=236 Identities=14% Similarity=0.070 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
+...|..+.+.....++.+.+...|++.+...+.++.....++.++ ..++++.+..+++++.+.. .++.+|..++..
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~--~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~ 119 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLL--QDGDPEEALKLAEKAYERD-GDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc-cccchhhHHHHH
Confidence 5677888888777777888888888888887777777777777652 3345666777777777654 345666666664
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchh
Q 008442 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 181 (565)
+ ...+..+++..+++++..... ......+|..+..+..+. .+.......|++++.. .|..
T Consensus 120 ~-~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~----------G~~~~A~~~~~~al~~-------~P~~ 179 (280)
T PF13429_consen 120 Y-YRLGDYDEAEELLEKLEELPA--APDSARFWLALAEIYEQL----------GDPDKALRDYRKALEL-------DPDD 179 (280)
T ss_dssp H-HHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHH--------TT-
T ss_pred H-HHHhHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHc-------CCCC
Confidence 3 335677777777777664221 111122222222221100 1233334444444443 2333
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHH
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~ 261 (565)
..++..++.+....+ +.++++.++.......|++..+|..++......|+.+.|..+|++++.. . +....+...|.
T Consensus 180 ~~~~~~l~~~li~~~-~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~-p~d~~~~~~~a 255 (280)
T PF13429_consen 180 PDARNALAWLLIDMG-DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--N-PDDPLWLLAYA 255 (280)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--c-ccccccccccc
Confidence 445555666666666 6777777777777776666777777777777778888888888887752 2 22335556677
Q ss_pred HHHHHhCCHHHHHHHHHHHhhHH
Q 008442 262 RFEREYGTLEDFDHSVQKVTPRL 284 (565)
Q Consensus 262 ~fE~~~G~~~~~~~~~~k~~~~~ 284 (565)
+.-...|..+.+..+..++...+
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHHT-------------------
T ss_pred ccccccccccccccccccccccc
Confidence 77777777777776666665544
No 87
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-09 Score=100.96 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
..-|||.-|.+-+++++|.-+|+.||.|.+|.|++|+.||.+-.||||+|.+.+++++|.- |+...|++++|.|.++.+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 5789999999999999999999999999999999999999999999999999999999985 899999999999999865
Q ss_pred C
Q 008442 470 K 470 (565)
Q Consensus 470 ~ 470 (565)
-
T Consensus 319 V 319 (479)
T KOG0415|consen 319 V 319 (479)
T ss_pred h
Confidence 4
No 88
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.95 E-value=1.3e-09 Score=93.01 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++||+||.+.+++..|...|+.||.+.+ -.++++..||.++|||||.|.+.+.+.+|+. +||..++.+++.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 44589999999999999999999999998765 4788888899999999999999999999998 899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+..+.
T Consensus 174 a~k~~ 178 (203)
T KOG0131|consen 174 AFKKD 178 (203)
T ss_pred EEecC
Confidence 86553
No 89
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=2.3e-09 Score=93.66 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDV-GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....-+||..+|..+.+..+..+|.++ |.+..+++-+++.||.|+|||||+|++++.|.-|.+ ||+..|.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334568999999999999999999998 678888888888899999999999999999999987 999999999999988
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7765
No 90
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=8.5e-09 Score=92.71 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..+--|||-||.+++++.-|=++|.+||.|..|.|++|..|.+.+|||||.+.+-++|..||. +||..++++.|.|++.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 446789999999999999999999999999999999999889999999999999999999997 8999999999999885
Q ss_pred CC
Q 008442 468 NP 469 (565)
Q Consensus 468 ~~ 469 (565)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 43
No 91
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=1.6e-09 Score=104.28 Aligned_cols=83 Identities=25% Similarity=0.496 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
+.++|||++|+++++++.|+..|.+||.|.++.++.|+.+++++||+||+|.+++.+.+++....+.|+|+.|.+..+.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67999999999999999999999999999999999999999999999999999999998888888899999999999987
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 764
No 92
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.91 E-value=1.3e-07 Score=94.00 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC------------chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD------------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~------------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~ 70 (565)
+....|+..|..+|. +.+.|+.|++|....-. .++-..+|||||..+|.+..||+.|++...+.
T Consensus 3 ~r~~el~~~v~~~P~----di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 3 KRTAELNRRVRENPH----DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred hHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 456678888888887 88999999998665321 13456789999999999999999999866544
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Q 008442 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR--ASEEEISTVFEKSLL 121 (565)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~--~~~~~~~~if~ral~ 121 (565)
- +.+.+...+++++...|.+..||..||.+..... -.++.++.+|.+||.
T Consensus 79 ~-~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 79 W-DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred C-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3 6667888899999999999999999998665532 346677777777774
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.88 E-value=1.5e-06 Score=101.85 Aligned_cols=245 Identities=10% Similarity=0.010 Sum_probs=131.0
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH--HHHHHHHH-----------HHHh
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD--LWLDYTQY-----------LDKT 70 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~--lW~~Y~~~-----------l~~~ 70 (565)
+...|+.+|...|. +..+|..........|+.+.+...|++++...|.+.. .|..++.- ....
T Consensus 288 A~~~l~~aL~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 288 AIPELQQAVRANPK----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34445555555544 4555555555555556666666666666666555432 23222110 0112
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhcccc
Q 008442 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGE 150 (565)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 150 (565)
.+..+.+...|++|+...|.....|..... +....+..+++...|++++...+.....+..+...+.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~-~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~------------ 430 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGD-VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR------------ 430 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------
Confidence 234455666666666666655555444333 2233455666666666666543332221111111110
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhcCCch---------hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHH
Q 008442 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDG---------LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ 221 (565)
Q Consensus 151 ~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~---------~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~ 221 (565)
...+++|+.++......... ....+...+......+ +.+.|..+|+++++..|++..++.
T Consensus 431 ----------~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 431 ----------QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred ----------hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 01112233332211110000 0112334566666677 999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
..+......|+++.|..+|++++.. ..+.+ ..+.....+....|..+.+...+.+
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~-~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQ--KPNDP-EQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999863 22333 3333334444455665555544443
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.87 E-value=1.8e-06 Score=89.07 Aligned_cols=252 Identities=11% Similarity=0.052 Sum_probs=168.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVR 78 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~ 78 (565)
.+...|+.++...|. +...|...+......|+++.+..+|++++...+... ..|...+.... ..++.+.+.
T Consensus 53 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~ 127 (389)
T PRK11788 53 KAIDLFIEMLKVDPE----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAE 127 (389)
T ss_pred HHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHH
Confidence 356788888888776 788899999999999999999999999988643332 35565555433 445778899
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHhhccccchhhhhH
Q 008442 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE-EYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (565)
Q Consensus 79 ~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~e~~~~~ 157 (565)
.+|++++...|.....+...+..+ ...+..+++..+|++++...+.... ....++......... . .++
T Consensus 128 ~~~~~~l~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~------~~~ 196 (389)
T PRK11788 128 ELFLQLVDEGDFAEGALQQLLEIY-QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----R------GDL 196 (389)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHH-HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----C------CCH
Confidence 999999998887777777776633 4468889999999998875433211 111122222111100 0 133
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch-HHHHHHHHHHHHHcCChHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM-LEAWQSYISMEIELDHINEA 236 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~-~~lw~~yi~~e~~~~~~~~a 236 (565)
..+...|.+++.. .+.....+..++.++...+ ++++|..+|++++...|.. ..+|...+..+...|+++.|
T Consensus 197 ~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 197 DAARALLKKALAA-------DPQCVRASILLGDLALAQG-DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHHHHHhH-------CcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 3444455544442 2223445566677777777 8888888888888876654 45667777777788888888
Q ss_pred HHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 237 RSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 237 R~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
..++++++.. . +.+ .++..+...-...|+.+.+...+.+++.
T Consensus 269 ~~~l~~~~~~--~-p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 269 LEFLRRALEE--Y-PGA-DLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHh--C-CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888763 1 122 3345666667777888877777776653
No 95
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.86 E-value=1.3e-08 Score=99.94 Aligned_cols=230 Identities=15% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDF--PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~--p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
...+.++......|+++.+..++.+++... |.+.++|..++...+ ..++.+.+..+|++.+..-+.+......++..
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 345577888888999999999998877665 899999999987544 45577889999999998777777777777764
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCc
Q 008442 102 LERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~ 179 (565)
...++.+++..+++++...... .+..++.++... .++..+...+..+.. ....+
T Consensus 88 --~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-----------------~~~~~~~~~l~~~~~-----~~~~~ 143 (280)
T PF13429_consen 88 --LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-----------------GDYDEAEELLEKLEE-----LPAAP 143 (280)
T ss_dssp --------------------------------H-HHHT-----------------T-HHHHHHHHHHHHH------T---
T ss_pred --cccccccccccccccccccccccchhhHHHHHHHHH-----------------hHHHHHHHHHHHHHh-----ccCCC
Confidence 3456677888888887754322 111111211110 144445555554432 11123
Q ss_pred hhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHH
Q 008442 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (565)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~ 259 (565)
....+|..++.++...| +.++|..+|++++...|++..++..++.+....|+.+.++.+++...... +....+|..
T Consensus 144 ~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~ 219 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDA 219 (280)
T ss_dssp T-HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHH
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 45678999999999999 99999999999999999999999999999999999999999999987631 122357777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Q 008442 260 WLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 260 ~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
+.......|+.+.+...+.++..
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccccccccc
Confidence 77777777888888877777654
No 96
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=1.3e-06 Score=82.31 Aligned_cols=196 Identities=15% Similarity=0.090 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~l 102 (565)
...|..........|+.+.+...|++++...|.+...|...+.... ..++.+.+...|++++...|....+|..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4567777777778899999999999999999999999888876554 345778899999999999998888888776633
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhH
Q 008442 103 ERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL 182 (565)
Q Consensus 103 e~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 182 (565)
...+..+++...|++++..+... ...
T Consensus 110 -~~~g~~~~A~~~~~~~~~~~~~~-----------------------------------------------------~~~ 135 (234)
T TIGR02521 110 -CQQGKYEQAMQQFEQAIEDPLYP-----------------------------------------------------QPA 135 (234)
T ss_pred -HHcccHHHHHHHHHHHHhccccc-----------------------------------------------------cch
Confidence 44677888888888877532100 000
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~ 262 (565)
..+..++......+ +++.|...|++++...|.....|..++.+....|+++.|..++++++.. ... ....+.....
T Consensus 136 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~-~~~~~~~~~~ 211 (234)
T TIGR02521 136 RSLENAGLCALKAG-DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQ-TAESLWLGIR 211 (234)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHH
Confidence 11112223333444 5556666666666655555555555555555566666666666666542 111 2223334444
Q ss_pred HHHHhCCHHHHHHHH
Q 008442 263 FEREYGTLEDFDHSV 277 (565)
Q Consensus 263 fE~~~G~~~~~~~~~ 277 (565)
.....|+.+.+....
T Consensus 212 ~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 212 IARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHhhHHHHHHHH
Confidence 555555555555443
No 97
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=3.4e-09 Score=97.04 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
.+|||||||..+++.+|+.+|++||.|.+|.|+.+ ||||..++...+..||. |++..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46899999999999999999999999999999864 99999999999999998 9999999999999988766
No 98
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=2.9e-06 Score=83.79 Aligned_cols=210 Identities=16% Similarity=0.178 Sum_probs=141.7
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
.+...|...+...+.....|..........|+...+...|++++...|.++..|......+. ..++.+.+...|++|+.
T Consensus 48 ~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 48 RLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 34455555554334456778888777788899999999999999999999999999887655 44578889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~ 166 (565)
..|.....|......+ ...+..+++...|++++...+... +..+|...... . .+...+...|.+
T Consensus 127 l~P~~~~a~~~lg~~l-~~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~~-------~------~~~~~A~~~l~~ 190 (296)
T PRK11189 127 LDPTYNYAYLNRGIAL-YYGGRYELAQDDLLAFYQDDPNDP--YRALWLYLAES-------K------LDPKQAKENLKQ 190 (296)
T ss_pred hCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHc-------c------CCHHHHHHHHHH
Confidence 9999888887766533 457899999999999998665533 22333321100 0 123333344433
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHH-------HHccchHHHHHHHHHHHHHcCChHHHHHH
Q 008442 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL-------KISGAMLEAWQSYISMEIELDHINEARSI 239 (565)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l-------~~~~~~~~lw~~yi~~e~~~~~~~~aR~i 239 (565)
+.... .+. .|. |......++ ++..+ ..++.++ +..++..+.|..........|+++.|+..
T Consensus 191 ~~~~~------~~~---~~~-~~~~~~~lg-~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 191 RYEKL------DKE---QWG-WNIVEFYLG-KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred HHhhC------Ccc---ccH-HHHHHHHcc-CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22211 111 121 223333345 44333 3444444 33455667899999999999999999999
Q ss_pred HHHHHh
Q 008442 240 YKRCYS 245 (565)
Q Consensus 240 ~~~al~ 245 (565)
|++++.
T Consensus 259 ~~~Al~ 264 (296)
T PRK11189 259 FKLALA 264 (296)
T ss_pred HHHHHH
Confidence 999997
No 99
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=7.6e-09 Score=103.40 Aligned_cols=78 Identities=26% Similarity=0.458 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
..|||.||+++++..+|..+|+.||.|.+|.+.++. .| ++|| ||+|.++++|.+|+. +||..+.|++|.|....++
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 349999999999999999999999999999999996 67 9999 999999999999998 7999999999999887665
Q ss_pred CC
Q 008442 471 QR 472 (565)
Q Consensus 471 ~~ 472 (565)
..
T Consensus 154 ~e 155 (369)
T KOG0123|consen 154 EE 155 (369)
T ss_pred hh
Confidence 43
No 100
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=95.70 Aligned_cols=80 Identities=31% Similarity=0.408 Sum_probs=71.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH--cCCcccCCeE
Q 008442 384 RTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA--KNKQMFLGKK 461 (565)
Q Consensus 384 ~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~--~~~~~~~g~~ 461 (565)
.++.+..-.||||++|-..+++.+|+..|.+||+|++|+++..+ |+|||+|.+.++|+.|.. .+...|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34556667899999999999999999999999999999997653 699999999999999886 4877899999
Q ss_pred EEEeecCC
Q 008442 462 LSIARSNP 469 (565)
Q Consensus 462 l~v~~a~~ 469 (565)
|.|.++.|
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999888
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.83 E-value=1.1e-08 Score=91.26 Aligned_cols=80 Identities=30% Similarity=0.462 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 390 DECTAFLSNINLKATYEDLRR----FFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
.+.||||.||+..+..++|+. +|++||.|.+|.... +.+.||-|||.|.+.+.|..|+. |+|..+.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999888 999999999988754 78899999999999999999998 8999999999999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
.+|..+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99976643
No 102
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.82 E-value=2.9e-08 Score=91.65 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
..+|+|.|||+.+++.||+++|..||.+..+-|..++ +|.+.|.|-|.|...++|.+|+. +++..++|++|.+....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999999999999999997 99999999999999999999998 799999999999988766
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 544
No 103
>PRK12370 invasion protein regulator; Provisional
Probab=98.82 E-value=2e-06 Score=92.66 Aligned_cols=213 Identities=9% Similarity=-0.093 Sum_probs=128.4
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHH---------hcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQ---------SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~---------~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~ 73 (565)
++...|+.++..+|. +...|........ ..++...+...+++||...|.+...|..++..+. ..++
T Consensus 279 ~A~~~~~~Al~ldP~----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~ 353 (553)
T PRK12370 279 QALKLLTQCVNMSPN----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSE 353 (553)
T ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccC
Confidence 356677777777775 4555543332211 1233567888888888888888888887765443 3346
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchh
Q 008442 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (565)
Q Consensus 74 ~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~ 153 (565)
.+.+...|++|+...|.+...|..+...+ ...+..+++...|++|+...+.....+......++ .
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~--~------------ 418 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNL-FMAGQLEEALQTINECLKLDPTRAAAGITKLWITY--Y------------ 418 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH--h------------
Confidence 77788888888888888888887666533 34677888888888888765543221111111010 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 008442 154 VLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (565)
Q Consensus 154 ~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~ 232 (565)
..-+++|+..+...+... +.....+...+.++...| ++++|+..+.+++...|.....+...+......|
T Consensus 419 -------~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G-~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 419 -------HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG-KHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred -------ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC-CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 011233333333333221 222334455566666667 8888888888877777776666666666555555
Q ss_pred hHHHHHHHHHHHh
Q 008442 233 INEARSIYKRCYS 245 (565)
Q Consensus 233 ~~~aR~i~~~al~ 245 (565)
+.+...++..+.
T Consensus 490 -~~a~~~l~~ll~ 501 (553)
T PRK12370 490 -ERALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHHH
Confidence 366666666544
No 104
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.82 E-value=5.4e-06 Score=92.84 Aligned_cols=109 Identities=7% Similarity=-0.013 Sum_probs=79.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|...|. +...|...+......++++.+..++++++...|.+.. |..++..+. ..+..+.+..+|+
T Consensus 67 ~A~~~~~~al~~~P~----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~ 140 (765)
T PRK10049 67 NSLTLWQKALSLEPQ----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHH
Confidence 356677777777776 6777888877777888888888888999888888888 887766544 3446777888999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~r 118 (565)
+++...|....+|..+...+.. .+..+.+...+++
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~-~~~~e~Al~~l~~ 175 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRN-NRLSAPALGAIDD 175 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH-CCChHHHHHHHHh
Confidence 9998888888888877764443 3444444444443
No 105
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.81 E-value=4.6e-06 Score=93.43 Aligned_cols=267 Identities=12% Similarity=0.059 Sum_probs=168.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh--------
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-------- 74 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~-------- 74 (565)
++...++.++...|. +.. |..+.......|+++.+...|++++...|.+..+|..|+..+.... ..
T Consensus 101 eA~~~l~~~l~~~P~----~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~-~~e~Al~~l~ 174 (765)
T PRK10049 101 EALVKAKQLVSGAPD----KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR-LSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHhCCC----CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHH
Confidence 466778888888776 677 8888888888999999999999999999999999999887654211 11
Q ss_pred --------------------------------------hHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHhcCCH
Q 008442 75 --------------------------------------NVVRDVYSRATKNCPWVGEL-------WVRSLLSLERSRASE 109 (565)
Q Consensus 75 --------------------------------------~~~~~v~erAl~~~p~~~~l-------W~~yi~~le~~~~~~ 109 (565)
+.+...|++++..+|..+.. +...+..+ ...+..
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~ 253 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRY 253 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhH
Confidence 23445566666544333222 12112222 234677
Q ss_pred HHHHHHHHHHHhccc---ccHHHHH-HHHHH------HHHHHHHHhhcccc------chhhhhHH---HHHHHHHHHHHH
Q 008442 110 EEISTVFEKSLLCAF---STFEEYL-DLFLT------RIDGLRRRILFSGE------VEGVLDYS---LIRETFQRASDY 170 (565)
Q Consensus 110 ~~~~~if~ral~~~~---~~~~~~~-~~~~~------~~~~~~r~~~~~~~------~e~~~~~~---~~~~~~~~a~~~ 170 (565)
+++...|++++.... .....++ .++.. -...+++ ++.... .+....+. .-.+-+++|+.+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~-~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE-LFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH-HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 889999999887532 1111111 11111 1111111 111111 01111111 112445667776
Q ss_pred HHhhhcCCc---------------hhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHH
Q 008442 171 LSEQMKNTD---------------GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (565)
Q Consensus 171 l~~~~~~~~---------------~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~ 235 (565)
+.......+ .....+...+.+....+ +.++|..++++++...|.+..+|+..+......|+++.
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 655443322 22345566777777777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 236 aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
|.++|++++.. ..+.+ .++..........|+.+.+..++++++
T Consensus 412 A~~~l~~al~l--~Pd~~-~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 412 AENELKKAEVL--EPRNI-NLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHhh--CCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999873 22223 355444445666778777777766654
No 106
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.80 E-value=4.1e-06 Score=94.61 Aligned_cols=246 Identities=9% Similarity=0.014 Sum_probs=151.0
Q ss_pred hhHHHHHHHhcCCCCChH--hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSE--KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~--~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
+...++..+...+ .+|. +...|..+...... +.+..+...|.+++...|.+.. .+..+ +.....+..+.+...|
T Consensus 457 ~~~~~~~~~~al~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA-~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 457 IADNCPAIVRLLG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVA-YQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhHHHHHHhcc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHH-HHHHHCCCHHHHHHHH
Confidence 3444555554443 2333 56788888877765 6777788888899888886532 22222 2223445677788889
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~ 161 (565)
++++..-|. ...|......+ ...++.+.+...|.+++...+.....+..+..... .. .++..+.
T Consensus 533 rka~~~~p~-~~a~~~la~al-l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~-------~~-------Gr~~eAl 596 (987)
T PRK09782 533 QKISLHDMS-NEDLLAAANTA-QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY-------IP-------GQPELAL 596 (987)
T ss_pred HHHhccCCC-cHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-------hC-------CCHHHHH
Confidence 888776444 34566555433 33678888889999888765443332222211110 00 1233334
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
..|.+++.. .+. ...+...+.+....+ +.+.|...|++++...|++..++..+..+....|+++.|..+|+
T Consensus 597 ~~~~~AL~l-------~P~-~~a~~~LA~~l~~lG-~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 597 NDLTRSLNI-------APS-ANAYVARATIYRQRH-NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHh-------CCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444332 222 455666677777777 78888888888888888878888888777777788888888888
Q ss_pred HHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 242 ~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+++.. . +....++......-...|+.+.+..++++++
T Consensus 668 ~AL~l--~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 668 RAHKG--L-PDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHh--C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88762 1 2233455555555566777777777777765
No 107
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.79 E-value=1.7e-08 Score=97.23 Aligned_cols=85 Identities=26% Similarity=0.484 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
...+|||++||.++++.++++.|.+||.|..+.++.|..+.+++||+||.|.+++++..++...-+.|+|+.+.|..|.|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35699999999999999999999999999999999999999999999999999999999999888999999999999998
Q ss_pred CCCCC
Q 008442 470 KQRKD 474 (565)
Q Consensus 470 ~~~~~ 474 (565)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 86543
No 108
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.79 E-value=1.3e-08 Score=108.80 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=63.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccC------------CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 008442 386 KGFTDECTAFLSNINLKATYEDLRRFFSDV------------GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKN 453 (565)
Q Consensus 386 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~------------G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~ 453 (565)
......++|||||||+.+++++|+.+|..+ +.|..+.+ +..+|||||+|.+.++|..||.|+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 345677899999999999999999999875 23444433 445799999999999999999999
Q ss_pred CcccCCeEEEEeec
Q 008442 454 KQMFLGKKLSIARS 467 (565)
Q Consensus 454 ~~~~~g~~l~v~~a 467 (565)
|..|.|++|.|...
T Consensus 244 g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYSNVFLKIRRP 257 (509)
T ss_pred CeEeeCceeEecCc
Confidence 99999999999754
No 109
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.3e-08 Score=95.70 Aligned_cols=81 Identities=11% Similarity=0.260 Sum_probs=75.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
.+|||..+.++.+++||+.+|+.||.|..|.+-+++..+.++||||++|.+..+...|+. ||-..++|.-|+|..+..+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 689999999999999999999999999999999998777899999999999999999998 8999999999999998655
Q ss_pred CC
Q 008442 471 QR 472 (565)
Q Consensus 471 ~~ 472 (565)
+.
T Consensus 291 P~ 292 (544)
T KOG0124|consen 291 PD 292 (544)
T ss_pred Cc
Confidence 44
No 110
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.6e-08 Score=91.41 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCc-ccCC--eEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQ-MFLG--KKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~-~~~g--~~l~v 464 (565)
.+.++||||-|...-+|+|++.+|..||.|.++.+.+.. .|.++|||||.|.+..+|++||. ++|. .+-| ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 467899999999999999999999999999999999986 89999999999999999999998 8764 4554 47999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
++++..+.
T Consensus 96 K~ADTdkE 103 (371)
T KOG0146|consen 96 KFADTDKE 103 (371)
T ss_pred EeccchHH
Confidence 99987765
No 111
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.72 E-value=2.4e-06 Score=77.06 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=141.9
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
...|+...+..-+|.||...|.++..|...+.+... .+..+.+.+-|++|+..-|.++.|-..|--||..+ +..+++.
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q-g~~~eA~ 123 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ-GRPEEAM 123 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC-CChHHHH
Confidence 357899999999999999999999999999886654 44778899999999999999999999999888774 5889999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHH
Q 008442 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (565)
Q Consensus 114 ~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (565)
.-|++|+..|.-. ..-.+|+.. ..| -.
T Consensus 124 q~F~~Al~~P~Y~--------------------------------~~s~t~eN~------------G~C---------al 150 (250)
T COG3063 124 QQFERALADPAYG--------------------------------EPSDTLENL------------GLC---------AL 150 (250)
T ss_pred HHHHHHHhCCCCC--------------------------------Ccchhhhhh------------HHH---------Hh
Confidence 9999999755210 000111100 001 12
Q ss_pred HcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHH
Q 008442 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~ 273 (565)
+.| ..+.|+.+|+++|...|+....-+..++.+...|++-.||..+++.... .. ...+.||. -++++...||.+.+
T Consensus 151 ~~g-q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~-~~-~~A~sL~L-~iriak~~gd~~~a 226 (250)
T COG3063 151 KAG-QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR-GG-AQAESLLL-GIRIAKRLGDRAAA 226 (250)
T ss_pred hcC-CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc-cc-ccHHHHHH-HHHHHHHhccHHHH
Confidence 445 8889999999999999999999999999999999999999999998763 22 33445554 56899999987755
Q ss_pred H
Q 008442 274 D 274 (565)
Q Consensus 274 ~ 274 (565)
.
T Consensus 227 ~ 227 (250)
T COG3063 227 Q 227 (250)
T ss_pred H
Confidence 4
No 112
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.70 E-value=2e-05 Score=89.12 Aligned_cols=237 Identities=12% Similarity=-0.045 Sum_probs=163.0
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|..++...|. .. ..+..+......|+.+.+...|++++...|. ...|..++..+.. .++.+.+...|++
T Consensus 495 Ai~a~~~Al~~~Pd----~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~-~Gd~~eA~~~l~q 567 (987)
T PRK09782 495 ALYAWLQAEQRQPD----AW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQA-AGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHhCCc----hH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 45557777777764 22 2333333345688999999999998777555 4557777665544 4477789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
++...|....++......+ ...++.+++...|++|+...+. ...+..+-..+. ...-
T Consensus 568 AL~l~P~~~~l~~~La~~l-~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~---------------------~lG~ 624 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQR-YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR---------------------QRHN 624 (987)
T ss_pred HHhcCCccHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH---------------------HCCC
Confidence 9998887766655432212 2358899999999999986664 333333222211 1122
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+.+|+..+...+...+....++..++.+....+ +.+.|..+|++++...|++..+|...+......|+++.|...|+++
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444445556677888888888888 9999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 008442 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (565)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (565)
+.. .+....|-..+-.++....+...+.
T Consensus 704 l~l---~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 704 IDD---IDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred Hhc---CCCCchhhhhhhHHHHHHHHHHHHH
Confidence 873 2344466665555555544444333
No 113
>PRK12370 invasion protein regulator; Provisional
Probab=98.69 E-value=1.1e-05 Score=87.09 Aligned_cols=203 Identities=10% Similarity=-0.061 Sum_probs=135.8
Q ss_pred hHhHHHHHHHHHHHHh--c---CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHH---H-----hcchhhHHHHHHHHHHH
Q 008442 20 SEKFQQYMIYLKYEQS--S---GDPGRVQLLYERAITDFPVSSDLWLDYTQYLD---K-----TLKVGNVVRDVYSRATK 86 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~--~---~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~---~-----~~~~~~~~~~v~erAl~ 86 (565)
+++++.|..|+.-... . .+.+.+..+|++|+...|.+...|...+.... . ..+..+.+...+++|+.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 3467777777775322 1 23467899999999999999988865543211 1 11235679999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~ 166 (565)
.-|.....|..... +....+..+++...|++|+...+.....+..+-..+. ...-+++
T Consensus 333 ldP~~~~a~~~lg~-~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~e 390 (553)
T PRK12370 333 LDHNNPQALGLLGL-INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEE 390 (553)
T ss_pred cCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHH
Confidence 99999999887765 3344678999999999999877664443332222211 0122333
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~-~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
|+..+...+...+.....+...+......+ ++++|...+++++... |+....+.....+....|+++.|+..+.+.+.
T Consensus 391 Ai~~~~~Al~l~P~~~~~~~~~~~~~~~~g-~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 391 ALQTINECLKLDPTRAAAGITKLWITYYHT-GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 444444433322222222222222344456 8899999999999874 77788888888888899999999999998765
No 114
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=3.5e-07 Score=80.73 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHH-cCCcccC---CeEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD-KFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL---GKKLS 463 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~---g~~l~ 463 (565)
..-+||||.+||.++...+|..+|..|-.-....+... +.....+-+|||+|.+..+|++|+. +||..++ +..|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999866665555332 2122245799999999999999998 8999885 77899
Q ss_pred EeecCCCCC
Q 008442 464 IARSNPKQR 472 (565)
Q Consensus 464 v~~a~~~~~ 472 (565)
|+.++...+
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 988876544
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=5.3e-08 Score=96.81 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..-++.|||++|+..+...+|+.+|++||.|.-..||++..+--.+||+||++.+.++|.+||. |+...|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456899999999999999999999999999999999987677779999999999999999998 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8644
No 116
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=4.4e-08 Score=100.58 Aligned_cols=76 Identities=34% Similarity=0.498 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC----cceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK----SRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~----~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
++|||.||+++++.++|...|...|.|.++.|...+ .+. |.|||||+|.++++|++|+. |+|..|+|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 349999999999999999999999999999987765 332 45999999999999999998 899999999999999
Q ss_pred cC
Q 008442 467 SN 468 (565)
Q Consensus 467 a~ 468 (565)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 117
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.65 E-value=6.2e-06 Score=81.42 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=137.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.++..|+.+|..+|. +...|..........|+.+.+...|+++|...|.+...|......+. ..+..+.+...|+
T Consensus 82 ~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~ 156 (296)
T PRK11189 82 LARNDFSQALALRPD----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHH
Confidence 467788899998887 78899999999999999999999999999999999999988776554 4457888999999
Q ss_pred HHHHcCCCCH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHH
Q 008442 83 RATKNCPWVG--ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (565)
Q Consensus 83 rAl~~~p~~~--~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~ 160 (565)
+++...|..+ .+|.. + .+ .....+++...|.+++....+..+.+ .+...+ + .+ +..
T Consensus 157 ~al~~~P~~~~~~~~~~-l--~~-~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~---l------g~-------~~~- 214 (296)
T PRK11189 157 AFYQDDPNDPYRALWLY-L--AE-SKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFY---L------GK-------ISE- 214 (296)
T ss_pred HHHHhCCCCHHHHHHHH-H--HH-ccCCHHHHHHHHHHHHhhCCccccHH-HHHHHH---c------cC-------CCH-
Confidence 9999999876 35542 2 22 24678888899977764322211111 100000 0 11 101
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHcC
Q 008442 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELD 231 (565)
Q Consensus 161 ~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-~~~~lw~~yi~~e~~~~ 231 (565)
...+..+...+.......+.....|.+.+.+....| ++++|+..|++++..+| +.++.-...++++...+
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g-~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 215 ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG-DLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 123333333222222222334567888889998888 99999999999999875 65666666666665433
No 118
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=88.77 Aligned_cols=135 Identities=22% Similarity=0.370 Sum_probs=106.3
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc-------------C---------CchhHHHHHHHHHhcCCCCHHH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-------------G---------DPGRVQLLYERAITDFPVSSDL 59 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~-------------~---------~~~~~~~lyERal~~~p~~~~l 59 (565)
.+.|-.||..|.+-.. .+.-++.||++|... + -+.++..+|.|+...+|.++.+
T Consensus 34 vktRr~fE~rL~rr~~----klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~ 109 (435)
T COG5191 34 VKTRRKFELRLQRREK----KLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKI 109 (435)
T ss_pred HHHHHHHHHHHhcccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHH
Confidence 4689999999988766 678899999998531 1 1235567889999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc---cHHHHHHHHHH
Q 008442 60 WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLT 136 (565)
Q Consensus 60 W~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~---~~~~~~~~~~~ 136 (565)
|.+|+.|+.+.. ....+-.||..|++..|.+.+||+-.+.+--....+++..|.+|.++|..+.. .|.+|..+.+.
T Consensus 110 w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 110 WSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 999999998655 55668899999999999999999875543333468899999999999987654 46667776666
Q ss_pred HHHHH
Q 008442 137 RIDGL 141 (565)
Q Consensus 137 ~~~~~ 141 (565)
|+.-+
T Consensus 189 yiTKL 193 (435)
T COG5191 189 YITKL 193 (435)
T ss_pred HHHHH
Confidence 66433
No 119
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.2e-05 Score=79.84 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=157.8
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
.-.|+...++..|..+|...|....+++..+..+. ...+.+.....|..|.+..|..+.++.+... +....+.++++.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~-d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ-m~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA-DENQSEKMWKDFNKAEDLDPENPDVYYHRGQ-MRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh-hhhccHHHHHHHHHHHhcCCCCCchhHhHHH-HHHHHHHHHHHH
Confidence 34578888999999999999999998665544322 2335677899999999999999999877654 323346688999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHH
Q 008442 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (565)
Q Consensus 114 ~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (565)
.-|++|+...+.....|+.+........ .+......|++++.- .|.+.+.+.+++++..
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~--------------k~~~~m~~Fee~kkk-------FP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQH--------------KIAESMKTFEEAKKK-------FPNCPEVYNLFAEILT 473 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHh-------CCCCchHHHHHHHHHh
Confidence 9999999877765555665544322110 223344556655543 4567788999999998
Q ss_pred HcCCChHHHHHHHHHHHHHccc------hHH--HHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q 008442 194 SMGKDMVSARGVWERLLKISGA------MLE--AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~------~~~--lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~ 265 (565)
..+ +++.|.+.|.+++..-|. +.. +-...+.+ .=.+++..|..++.+|++. .+..+.-+.-..+||.
T Consensus 474 Dqq-qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 474 DQQ-QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL---DPKCEQAYETLAQFEL 548 (606)
T ss_pred hHH-hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHH
Confidence 888 999999999999988655 222 22222222 1238999999999999872 2334455677788999
Q ss_pred HhCCHHHHHHHHHHHhhH
Q 008442 266 EYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 266 ~~G~~~~~~~~~~k~~~~ 283 (565)
..|+++.+-+.++++..-
T Consensus 549 Q~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999998888888877543
No 120
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=9.2e-06 Score=73.43 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=97.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.++..+|.+|..+|. .+..|...+-.-...|..+.+..-|++||...|.+.++-..|.-||-..+ .++.+..-|+
T Consensus 53 ~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg-~~~eA~q~F~ 127 (250)
T COG3063 53 QAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG-RPEEAMQQFE 127 (250)
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC-ChHHHHHHHH
Confidence 578999999999998 88999999999999999999999999999999999999999999998777 7888999999
Q ss_pred HHHHc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 83 RATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 83 rAl~~--~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
+|+.. .|.....|..--. .-...+..+.++..|+|+|...+.
T Consensus 128 ~Al~~P~Y~~~s~t~eN~G~-Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 128 RALADPAYGEPSDTLENLGL-CALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHhCCCCCCcchhhhhhHH-HHhhcCCchhHHHHHHHHHHhCcC
Confidence 99983 3444455555332 223457788999999999975544
No 121
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.60 E-value=7.2e-08 Score=93.08 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
.+..|+|||.|||+++|++.|++-|..||.|..+.|+. +|+++| .|.|.++++|+.|+. |++..++||.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 36679999999999999999999999999999999853 688888 899999999999998 799999999999976
No 122
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.60 E-value=7.2e-08 Score=88.49 Aligned_cols=74 Identities=27% Similarity=0.415 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
..+|+|+|+.+.++.++|+..|.+||.|.++.|+.+ |+||.|.-.++|..|+. |++.++.|+++.|..+..
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 468999999999999999999999999999999864 99999999999999997 999999999999999876
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+-+
T Consensus 150 rlr 152 (346)
T KOG0109|consen 150 RLR 152 (346)
T ss_pred ccc
Confidence 644
No 123
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.59 E-value=1.6e-07 Score=87.19 Aligned_cols=84 Identities=21% Similarity=0.439 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
...+...+||+|+.+.++.+++...|+.||.|..+.++.++.+|.++||+||+|.+.+.++.|+.|++..|.|+.+.|..
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 34566899999999999999999999999999999999999888999999999999999999999999999999999988
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6543
No 124
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.59 E-value=4.3e-06 Score=83.18 Aligned_cols=170 Identities=16% Similarity=0.205 Sum_probs=119.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHH
Q 008442 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLK-----------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (565)
Q Consensus 43 ~~lyERal~~~p~~~~lW~~Y~~~l~~~~~-----------~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~ 111 (565)
..-|++.|..+|.+.+.|+.|+.|-..... ..+.-..||+|||++.|.+..||+.||...+. ..+.+.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 346899999999999999999998765432 12346689999999999999999999986655 457788
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 008442 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (565)
Q Consensus 112 ~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (565)
+...+++++...+. ...+|..|+++....... ..+..++.+|.+|+..+.......
T Consensus 84 l~~~we~~l~~~~~----~~~LW~~yL~~~q~~~~~-------f~v~~~~~~y~~~l~~L~~~~~~~------------- 139 (321)
T PF08424_consen 84 LAKKWEELLFKNPG----SPELWREYLDFRQSNFAS-------FTVSDVRDVYEKCLRALSRRRSGR------------- 139 (321)
T ss_pred HHHHHHHHHHHCCC----ChHHHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHHhhccc-------------
Confidence 89999999875543 346777777766543221 145677788888877664322111
Q ss_pred HHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 008442 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (565)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~ 248 (565)
..... +... . ....+.+.+.++.|+...|..+.|..+++-.++..|
T Consensus 140 ~~~~~-~~~~----~------e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 MTSHP-DLPE----L------EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred ccccc-chhh----H------HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 00000 1111 1 111256788899999999999999999999987543
No 125
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=3.7e-08 Score=101.09 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
...|+|.|||+..+..+++.+|..||.+.+|+|+.....+.++|||||+|-++.+|.+|+. +....+.||+|.+.++..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 4689999999999999999999999999999999875567789999999999999999997 788889999999999976
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
...
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 543
No 126
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=98.57 E-value=3.9e-08 Score=51.76 Aligned_cols=16 Identities=75% Similarity=1.215 Sum_probs=14.6
Q ss_pred CCCCCChHHHHhhhcc
Q 008442 548 DLKPKSNDEFRKMFIK 563 (565)
Q Consensus 548 ~~~~~sn~~f~~~~~~ 563 (565)
.++||||||||||||+
T Consensus 6 ~~~p~SNddFrkmfl~ 21 (21)
T PF05391_consen 6 TAKPKSNDDFRKMFLK 21 (21)
T ss_pred ccCccchHHHHHHHcC
Confidence 5789999999999986
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.56 E-value=2.1e-07 Score=87.62 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVS--------SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL 458 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~ 458 (565)
...+..|||+|||.++|.+++.++|+.||.|. .|.|.++. .|+.+|=|.+.|...+++.-|+. |++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34567899999999999999999999999874 47888886 79999999999999999999998 7999999
Q ss_pred CeEEEEeecCCCCC
Q 008442 459 GKKLSIARSNPKQR 472 (565)
Q Consensus 459 g~~l~v~~a~~~~~ 472 (565)
|+.|+|..|+=...
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999864433
No 128
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.1e-07 Score=93.18 Aligned_cols=75 Identities=31% Similarity=0.368 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
..|||| +++++..|.++|+++|.|.++++.+|. | +-|||||.|.++.+|.+|+. +|...+.|++|+|.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999996 5 99999999999999999998 8999999999999998655
Q ss_pred CC
Q 008442 471 QR 472 (565)
Q Consensus 471 ~~ 472 (565)
..
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 43
No 129
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.54 E-value=8.7e-05 Score=69.81 Aligned_cols=164 Identities=9% Similarity=0.010 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHH
Q 008442 58 DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137 (565)
Q Consensus 58 ~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~ 137 (565)
.+|...+.... ..++.+.+...|++++...|.....|..... +....++.+.+...|++++...+.
T Consensus 32 ~~~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~~------------ 97 (234)
T TIGR02521 32 KIRVQLALGYL-EQGDLEVAKENLDKALEHDPDDYLAYLALAL-YYQQLGELEKAEDSFRRALTLNPN------------ 97 (234)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC------------
Confidence 44444443333 2335666777888888777777666665544 333356666666666666643211
Q ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccc
Q 008442 138 IDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGA 215 (565)
Q Consensus 138 ~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~ 215 (565)
....+..++.+....+ ++++|...|++++.. .+.
T Consensus 98 -------------------------------------------~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 98 -------------------------------------------NGDVLNNYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred -------------------------------------------CHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcccccc
Confidence 1122334445555666 899999999999975 345
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 216 MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 216 ~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
...+|...+......|+++.|...|.+++.. . +.....+..+..+....|+.+.+...++++..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQI--D-PQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888888889999999999999999873 2 22335566666777778998888877777654
No 130
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.50 E-value=0.00023 Score=73.86 Aligned_cols=251 Identities=11% Similarity=-0.000 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
..-.++--+......|+++.+...|++++...|.+. .+-..++..... .++.+.++..+++.++..|.+..++..+..
T Consensus 117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 117 PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARHGVDKLLEMAPRHKEVLKLAEE 195 (409)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344455556666778999999999999999998885 677777775554 447788999999999999999988777766
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccHHHHH----HHHHHHHHH---------HHHHhh-cc----ccchh---hhhHHH
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYL----DLFLTRIDG---------LRRRIL-FS----GEVEG---VLDYSL 159 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~~~~~~~----~~~~~~~~~---------~~r~~~-~~----~~~e~---~~~~~~ 159 (565)
+....++.+.+..++.+.++........+. ..+...++. +..... .. +.... +...-.
T Consensus 196 -~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 196 -AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred -HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 444578889999999998865322222221 222111110 000000 00 00000 000011
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH--HHHHHHHHHHHHcCCh
Q 008442 160 IRETFQRASDYLSEQMKNTDGLLR----LYAYWAHLEQSMGKDMVSARGVWERLLKISGAML--EAWQSYISMEIELDHI 233 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~~~~----l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~--~lw~~yi~~e~~~~~~ 233 (565)
..+.+++|.+.+...+...+.... ++..+..+. .+ +...+.+.++++++.+|+++ .+...+..+....|++
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--~~-~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--PE-DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC--CC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence 112245566666555553222221 222222222 23 66777788888888877777 7777778777778888
Q ss_pred HHHHHHHHH--HHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 234 NEARSIYKR--CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 234 ~~aR~i~~~--al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
++|++.|++ ++.. .+.++. +..+...-...|+.+.+.+..++++
T Consensus 352 ~~A~~~le~a~a~~~---~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 352 IEAADAFKNVAACKE---QLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhHHhhc---CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888884 4431 223333 4466777777777777766655543
No 131
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.4e-05 Score=74.49 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHH-HHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYT-QYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~-~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~r 118 (565)
+++...|.|||+.+|....+|..-. .|+ .+++...+.+.|.|||..||.+..-|..--+..+. .+...-+.--|++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyv--EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYV--EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHH--HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHHHH
Confidence 4556666666666666666666443 222 23344556666666666666666666554333322 1222233344445
Q ss_pred HHhcc
Q 008442 119 SLLCA 123 (565)
Q Consensus 119 al~~~ 123 (565)
|+.+.
T Consensus 424 A~~~k 428 (559)
T KOG1155|consen 424 ALELK 428 (559)
T ss_pred HHhcC
Confidence 54443
No 132
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.7e-05 Score=76.08 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=114.3
Q ss_pred hhhHHHHHHH---hcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHH
Q 008442 3 NARAHLEEQI---SRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD 79 (565)
Q Consensus 3 ~~R~~~E~~l---~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~ 79 (565)
..|..+|.++ ++.-..+|....+|.--.-=-....+...+..-|.|||..||.+...|-...+..+ .++.+.-++-
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLy 419 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALY 419 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHH
Confidence 3455555554 22222233377888633322223456778999999999999999999998876433 4445666888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 008442 80 VYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (565)
Q Consensus 80 v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~ 159 (565)
-|++|+..-|++..+|...-...+. .+..+++...|.+|+.++-..-..++.+-..+-++ .+...
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l--------------~d~~e 484 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL--------------KDLNE 484 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH--------------HhHHH
Confidence 9999999999999999998776655 57789999999999986643222333333222111 13344
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHH
Q 008442 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWE 207 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e 207 (565)
+...|+++++.....-...+.......+.+.++.+.+ +.++|-....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~-~~~~As~Ya~ 531 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK-DFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc-chHHHHHHHH
Confidence 4555565555331111122323333344555555555 5555544333
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.46 E-value=3.5e-07 Score=94.78 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
-.+|||||+|+.++++.+|..+|+.||.|.+|.++.. +|||||......+|.+|+. |....+.++.|+|.++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3589999999999999999999999999999988654 5999999999999999997 88889999999999986
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
....
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 5544
No 134
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.45 E-value=2e-06 Score=72.48 Aligned_cols=111 Identities=17% Similarity=0.373 Sum_probs=85.8
Q ss_pred CchhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc----CCchhHHHHHHHHHhcCCCCH---------HHHHHHHHHH
Q 008442 1 MCNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS----GDPGRVQLLYERAITDFPVSS---------DLWLDYTQYL 67 (565)
Q Consensus 1 ~~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~----~~~~~~~~lyERal~~~p~~~---------~lW~~Y~~~l 67 (565)
+...|..||..|.... ...+.++.|..||.|...+ +.......++|||+..+..+. .+|+.|+++.
T Consensus 1 ~~~~r~~~e~~i~~~~-~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~ 79 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYE-EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS 79 (126)
T ss_dssp -HHHHHHHHHHHHCCG-GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB
T ss_pred CHHHHHHHHHHHHHcc-CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc
Confidence 3568999999998876 2233588999999998764 344667889999999876653 4999999864
Q ss_pred HHhcchhhHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008442 68 DKTLKVGNVVRDVYSRATKN-C-PWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (565)
Q Consensus 68 ~~~~~~~~~~~~v~erAl~~-~-p~~~~lW~~yi~~le~~~~~~~~~~~if~ral 120 (565)
. ...+||.....+ + -....+|..|+..+|. .+++.++..||+.+|
T Consensus 80 ~-------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 S-------DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp S-------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred c-------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 3 467888888873 3 4568999999997877 588999999999875
No 135
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.44 E-value=0.00035 Score=79.91 Aligned_cols=270 Identities=7% Similarity=-0.043 Sum_probs=166.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
.++..|+........ .+...|...|....+.|+.+.+..+|+++.... ..+...|...+..+-+. +..+.+.++|
T Consensus 490 ~A~~vf~eM~~~Gv~---PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf 565 (1060)
T PLN03218 490 AMFEVFHEMVNAGVE---ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVL 565 (1060)
T ss_pred HHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 466778877765421 156789999999889999999999999987653 34567788777765544 4677889999
Q ss_pred HHHHHc---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHHHHHhhcccc----
Q 008442 82 SRATKN---CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTRIDGLRRRILFSGE---- 150 (565)
Q Consensus 82 erAl~~---~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~---- 150 (565)
+..... +..+...|..-|..+-+ .+.++++..+|+.+...... .|...+..+....+......++..+
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k-~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACAN-AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 998752 22234566665654443 57888999999988875431 2222222221111000000000000
Q ss_pred -chhhhhHHHHH------HHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-ccchHHHHH
Q 008442 151 -VEGVLDYSLIR------ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQ 221 (565)
Q Consensus 151 -~e~~~~~~~~~------~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~lw~ 221 (565)
.-+..-+..+. ..+++|.+++...... ..+....|...+..+.+.+ +++.|..+|+.+... ...+...|.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 00000111111 1234455555443332 2334456677777788888 899999999988765 344577899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
..|......|+++.|.++|+.+... ........|...+.--...|+.+.+..++...
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999988653 22223455666666666778877777666554
No 136
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=5.1e-05 Score=75.62 Aligned_cols=220 Identities=11% Similarity=0.075 Sum_probs=140.2
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|..+|.-.|. ..+.|+...-......+...-...|..|...+|.+++++..-.....- ....+.+..-|++
T Consensus 345 a~~d~~~~I~l~~~----~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e~A~aDF~K 419 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPA----FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYEEAIADFQK 419 (606)
T ss_pred hhhhHHHHHhcCcc----cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHHHHHHHHHH
Confidence 34456666666554 333344444444455677788899999999999999998877653332 2356778999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
|++.-|.+.--++.... ++-....+++....|+.|+...+...+.|--+.....|. .++..+..-
T Consensus 420 ai~L~pe~~~~~iQl~~-a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq--------------qqFd~A~k~ 484 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCC-ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ--------------QQFDKAVKQ 484 (606)
T ss_pred HhhcChhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH--------------HhHHHHHHH
Confidence 99998876544444433 333355789999999999864333222222211211110 134444455
Q ss_pred HHHHHHHHHhhhc-CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008442 164 FQRASDYLSEQMK-NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 164 ~~~a~~~l~~~~~-~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
|..|+.+-...-. ......-+....+.+- ..+|+..|..+++++++..|.+-......+.|+.+.|++++|.++|++
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q--wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQ--WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhc--hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555553221000 0001111112222222 224999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 008442 243 CYS 245 (565)
Q Consensus 243 al~ 245 (565)
++.
T Consensus 563 sa~ 565 (606)
T KOG0547|consen 563 SAQ 565 (606)
T ss_pred HHH
Confidence 975
No 137
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.39 E-value=0.00052 Score=70.82 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~-lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
.+..-.......|+++.+...|+++....|.+.- ..+.-+... ...++.+.+...+++++...|.+..+...... +.
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~-l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~-~~ 197 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ-LARNENHAARHGVDKLLEVAPRHPEVLRLAEQ-AY 197 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HH
Confidence 3444455556789999999999999998888753 322223332 34457888999999999999998766555444 33
Q ss_pred HhcCCHHHHHHHHHHHHhcccccHHHHHHHH-HHHHHHHHHHhhcc-----------------ccchhh---hhHHHHHH
Q 008442 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFS-----------------GEVEGV---LDYSLIRE 162 (565)
Q Consensus 104 ~~~~~~~~~~~if~ral~~~~~~~~~~~~~~-~~~~~~~~r~~~~~-----------------~~~e~~---~~~~~~~~ 162 (565)
...++.+.+..++.+..+.........-.+. ..+...+....... +..... ........
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 3357888899888887764432222211111 11111111000000 000000 00000112
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
..+.|...+...+.. ++...+...|+.+.. + +.+++.+..++.++.+|++..+.+.+..+....++++.|++.|++
T Consensus 278 ~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~--~-~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 278 DHDTAQQIILDGLKR-QYDERLVLLIPRLKT--N-NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred CHHHHHHHHHHHHhc-CCCHHHHHHHhhccC--C-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 234566666665552 334456666666532 4 888999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 243 CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 243 al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
++... + ....+..+.......|..+....+..+.
T Consensus 354 al~~~---P-~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 354 ALKQR---P-DAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhcC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98731 2 2234567788888899888777666554
No 138
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.38 E-value=9e-07 Score=84.39 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVS--------SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL 458 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~ 458 (565)
...+.+|||.+||..+++.+|..+|.+||.|. .|.|.+++.|+.++|-|.|.|.++..|++|+. .++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 46678999999999999999999999999874 47788888999999999999999999999999 7999999
Q ss_pred CeEEEEeecCCCCC
Q 008442 459 GKKLSIARSNPKQR 472 (565)
Q Consensus 459 g~~l~v~~a~~~~~ 472 (565)
|..|.|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876654
No 139
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.38 E-value=0.00079 Score=77.06 Aligned_cols=270 Identities=9% Similarity=-0.016 Sum_probs=176.9
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p-~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
.++..|+..+..... .+...|...|....+.|+.+.+..+|+++....+ .+...|...+.-+.+. +..+.+..+|
T Consensus 455 ~A~~lf~~M~~~Gl~---pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf 530 (1060)
T PLN03218 455 GALRVLRLVQEAGLK---ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 467788887765432 1567899999999999999999999999998643 4788999888866544 4778899999
Q ss_pred HHHHHc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cc--cc--cHHHHHHHHHHHHHHHHHHhhccccch--
Q 008442 82 SRATKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLL--CA--FS--TFEEYLDLFLTRIDGLRRRILFSGEVE-- 152 (565)
Q Consensus 82 erAl~~-~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~--~~--~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e-- 152 (565)
+..... +..+...|...|..+-+ .+..+++..+|++... .+ ++ .+...+..+....+......++....+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k-~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQ-SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999864 33356788887775554 6889999999999875 22 22 222223222211111110000000000
Q ss_pred ---hhhhHHHHH------HHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-ccchHHHHH
Q 008442 153 ---GVLDYSLIR------ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQ 221 (565)
Q Consensus 153 ---~~~~~~~~~------~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~lw~ 221 (565)
...-+..+. ..+++|..++...... ..+....|...++...+.+ +++.|..+|+.+++. ...+...|.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG-DLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 000111111 2234455555443322 2233445666677777778 999999999999987 455688999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
..+..+...|+++.|.++|+..... ........|...+.--...|..+.+.+++...
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~--g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSI--KLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999998653 22233456777777777788888777776653
No 140
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=0.00046 Score=76.73 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=57.7
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++.+.+.....+......+ +...|.++++.++...|.+..+++.+++.+...|.+..|..+++.++.
T Consensus 412 n~d~~~~~~l~a~~~~~~g-dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALN-DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred CccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3444555555667677777 999999999999999999999999999999999999999999988865
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.37 E-value=3e-07 Score=82.95 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+..+||.|.|..+++++-|-..|.+|-.-....+++++.||+++||+||.|.++.++..|+. |+|..++.++|....+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456899999999999999999999999888888899999999999999999999999999997 9999999999887666
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
..+
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 443
No 142
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=5e-05 Score=77.34 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
.-|.++++++..++...|....||..+......-. ...+|..-|.+|++.-|..+.+|....--.+..|.+..|.+.|=
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 56788888888888888888899998887776655 77889999999999999999999888888888999999999999
Q ss_pred HHHhcccC----CCC---cHHHHHHHHHHHHHhCCHHHHH
Q 008442 242 RCYSKRFT----GTG---SEDICHAWLRFEREYGTLEDFD 274 (565)
Q Consensus 242 ~al~~~~~----~~~---~~~i~~~~~~fE~~~G~~~~~~ 274 (565)
.||.-.-. .+. .+.||...-.+-...+..+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 98753211 111 2568876665555555555343
No 143
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=6.3e-07 Score=80.97 Aligned_cols=71 Identities=21% Similarity=0.454 Sum_probs=64.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
..||||+||+.+.+.+|..+|..||.|.++.+.. ||+||+|.+..+|..|+. +++..|.|-.+.|.++.+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3689999999999999999999999999988742 799999999999999997 8999999998888887654
No 144
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.32 E-value=0.0015 Score=70.09 Aligned_cols=255 Identities=15% Similarity=0.154 Sum_probs=158.4
Q ss_pred ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH-
Q 008442 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR- 97 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~- 97 (565)
+|.+.+.|....+.-.+.|++.+++..|-|||..+|.+..+-..++....+.+ ....+..-|.+++..+|.+.-.|+.
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 34467899999999889999999999999999999999887777777555444 6667889999999999854433322
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHH--------HHhhcccc----------
Q 008442 98 ----SLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLR--------RRILFSGE---------- 150 (565)
Q Consensus 98 ----yi~~le~~~~~~~~~~~if~ral~~~-----~~~~~~~~~~~~~~~~~~~--------r~~~~~~~---------- 150 (565)
++.+.-. ....+.+.++++.++... .+....+..+++..-.+-+ ++...++.
T Consensus 282 ~i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 282 LIRRVAHYFIT-HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 2222222 233377888888888622 2245555666655332211 11000100
Q ss_pred ---------chh--hhhHHHHH---HHH----HHHHHHHHhhhc----CCchhHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008442 151 ---------VEG--VLDYSLIR---ETF----QRASDYLSEQMK----NTDGLLRLYAYWAHLEQSMGKDMVSARGVWER 208 (565)
Q Consensus 151 ---------~e~--~~~~~~~~---~~~----~~a~~~l~~~~~----~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~ 208 (565)
+.. ..++..++ ..+ ....+.+...+. .......|+.-.++.....+ .+..|..+|..
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~-~~~~Al~~l~~ 439 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG-KYKEALRLLSP 439 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 000 00111111 111 011111111111 12223456666777788888 88999999999
Q ss_pred HHHHccc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 209 LLKISGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 209 ~l~~~~~-~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
++...+. +.-+|...+.++...|..+.|...|+++|.- .+...++-.....+-..-|+.+.+-+++..
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9887543 3679999999999999999999999999872 223334444555566667777766655554
No 145
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=0.00015 Score=75.14 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=132.5
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHH----
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD---- 79 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~---- 79 (565)
+...|+.++...|.. .......+.......++.+.+...+++.+...|.++.++..++......+ +.+.+..
T Consensus 137 A~~~l~~a~~~~p~~---~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~ 212 (409)
T TIGR00540 137 ANQHLEEAAELAGND---NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG-AWQALDDIIDN 212 (409)
T ss_pred HHHHHHHHHHhCCcC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 455666666655541 13455556777777788888888888888888888876666555432222 3333333
Q ss_pred ----------------------------------HHHHHHHcCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008442 80 ----------------------------------VYSRATKNCP----WVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (565)
Q Consensus 80 ----------------------------------v~erAl~~~p----~~~~lW~~yi~~le~~~~~~~~~~~if~ral~ 121 (565)
.++.+....| .+..+|..|.. +....+..+.+..++++++.
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~-~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 213 MAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE-HLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH-HHHHCCChHHHHHHHHHHHh
Confidence 3333344444 35566666665 33335667777777887777
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhH--HHHHHHHHHHHHcCCCh
Q 008442 122 CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL--RLYAYWAHLEQSMGKDM 199 (565)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~l~~~~a~~e~~~~~~~ 199 (565)
..++.....+.+...+. .+..+ +. ..+...++.++...+... .+...++.+..+.+ ++
T Consensus 292 ~~pd~~~~~~~~l~~~~------~l~~~------~~-------~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~-~~ 351 (409)
T TIGR00540 292 KLGDDRAISLPLCLPIP------RLKPE------DN-------EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG-EF 351 (409)
T ss_pred hCCCcccchhHHHHHhh------hcCCC------Ch-------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc-cH
Confidence 54442211111111110 00000 11 222333334444333334 67888999998888 99
Q ss_pred HHHHHHHH--HHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 200 VSARGVWE--RLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 200 ~~ar~i~e--~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
++|++.|+ .++...|+... +..++......|+.+.|+++|++++.-
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999 57777887655 559999999999999999999999763
No 146
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.31 E-value=6.3e-07 Score=83.76 Aligned_cols=81 Identities=14% Similarity=0.304 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
++..|..|+.+-.+.+....+..+|-.||+.+|++++||+.-++|......+.+.++.+|.++|+..|.++.||..|.+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr- 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR- 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH-
Confidence 7889999999999988888999999999999999999999988887777778888999999999999999999999987
Q ss_pred HH
Q 008442 102 LE 103 (565)
Q Consensus 102 le 103 (565)
+|
T Consensus 185 ~E 186 (435)
T COG5191 185 ME 186 (435)
T ss_pred HH
Confidence 44
No 147
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.29 E-value=3.5e-06 Score=83.40 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
.+..-|-+.+||+++|+++|.+||+.|+ |.++.+++ .+|+..|-|||+|.++++++.|++++...+..|-|.|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 3445677889999999999999999996 88866655 47999999999999999999999999999999999998886
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
+...
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5543
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=2.8e-07 Score=81.18 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..+||||+|+...++++-|.++|-+-|.|..+.|+.++ .++.+ ||||.|.++.++.-|+. +||..+.++.+.|..-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 35799999999999999999999999999999999887 67777 99999999999999999 6999999988877664
No 149
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.28 E-value=0.00017 Score=74.50 Aligned_cols=212 Identities=14% Similarity=0.088 Sum_probs=136.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.++..|+.+....|.. .......-.+.....|+++.+...+++.+...|.++......+...... ++.+.+..+++
T Consensus 136 ~A~~~l~~A~~~~~~~---~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~ 211 (398)
T PRK10747 136 RANQHLERAAELADND---QLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILP 211 (398)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 3567788887766641 1222233356667789999999999999999999987655555433222 34555555555
Q ss_pred HHHHcCC------------------------------------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008442 83 RATKNCP------------------------------------------WVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (565)
Q Consensus 83 rAl~~~p------------------------------------------~~~~lW~~yi~~le~~~~~~~~~~~if~ral 120 (565)
+..+..+ ..+.++..|...+. ..+..+.+..++++++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~-~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI-ECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 5544332 23444445544222 2445555555666655
Q ss_pred hcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChH
Q 008442 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV 200 (565)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~ 200 (565)
..+++. .+...+. .+ ....+.+++..++...+..+....+...++++....+ +.+
T Consensus 291 ~~~~~~-----~l~~l~~-----~l--------------~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~-~~~ 345 (398)
T PRK10747 291 KRQYDE-----RLVLLIP-----RL--------------KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG-EWQ 345 (398)
T ss_pred hcCCCH-----HHHHHHh-----hc--------------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHH
Confidence 533221 0011110 00 0022344555555556656666778889999999988 999
Q ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 201 SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 201 ~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+|+..|++++...|+. ..+..++..+...|+.+.|..+|++++.
T Consensus 346 ~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 346 EASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999998884 4567899999999999999999999986
No 150
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=6.7e-05 Score=71.10 Aligned_cols=185 Identities=17% Similarity=0.201 Sum_probs=106.3
Q ss_pred cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHhcCCHHH
Q 008442 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE----LWVRSLLSLERSRASEEE 111 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~----lW~~yi~~le~~~~~~~~ 111 (565)
...|.++..+|-..|..+|.++.+-..-+... ..++..+.+.++|.++++..|...+ |=..|. +.+..|.
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~-eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-----Y~~~PE~ 342 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIH-EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-----YDNNPEM 342 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHH-HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-----cCCChHH
Confidence 34455555555555555555555544444422 2222334455555555554443211 111111 1334444
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 008442 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (565)
Q Consensus 112 ~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (565)
+...|.|.|+.+....+.+..+-++.+ +. ..++.+...|++|.....+ .+....+|-....+
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~--------ya------qQ~D~~L~sf~RAlstat~----~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCL--------YA------QQIDLVLPSFQRALSTATQ----PGQAADVWYNLGFV 404 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHH--------hh------cchhhhHHHHHHHHhhccC----cchhhhhhhcccee
Confidence 555555555444333333333333211 11 1344556667777665432 22334567666666
Q ss_pred HHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
....| |+.-|...|.-+|..++++.+.....+-++.+.|+++.||.+|..|-+
T Consensus 405 aV~iG-D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 405 AVTIG-DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred EEecc-chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66677 999999999999999999899999999999999999999999999865
No 151
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.00098 Score=66.04 Aligned_cols=201 Identities=11% Similarity=0.007 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
++|.-+-......+..+++..+++.+|..+|.+..+|..-...+.......+.+...+++++...|.+..+|......++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34443333344456778999999999999999999999777666554435677899999999999999999987654455
Q ss_pred HhcCC-HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhH
Q 008442 104 RSRAS-EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL 182 (565)
Q Consensus 104 ~~~~~-~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 182 (565)
..... .+.....+++++...+..+..+...-.. +. ....|+++++++...+...+...
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~----l~-----------------~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV----LR-----------------TLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH----HH-----------------HhhhHHHHHHHHHHHHHHCCCch
Confidence 43322 3566778888887665543322211111 10 01225556666666555333334
Q ss_pred HHHHHHHHHHHHc---C---CChHHHHHHHHHHHHHccchHHHHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 008442 183 RLYAYWAHLEQSM---G---KDMVSARGVWERLLKISGAMLEAWQSYISMEIEL----DHINEARSIYKRCYS 245 (565)
Q Consensus 183 ~l~~~~a~~e~~~---~---~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~----~~~~~aR~i~~~al~ 245 (565)
..|.....+.... + ...+.......++|...|++...|.....+.... +....|...+..++.
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4444333222222 1 1134566777899999999999998888877663 344557777877765
No 152
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.25 E-value=4.2e-07 Score=91.00 Aligned_cols=86 Identities=31% Similarity=0.514 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
..++.+|||+-.|+..++..+|.++|+.+|.|.+|+++.|+.++.++|.|||+|.+.+++..||.+.|..+.|.+|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+...++
T Consensus 255 sEaekn 260 (549)
T KOG0147|consen 255 SEAEKN 260 (549)
T ss_pred cHHHHH
Confidence 754443
No 153
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.25 E-value=0.0002 Score=76.52 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=143.6
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHhcchhhH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLD-----YTQYLDKTLKVGNV 76 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~-----Y~~~l~~~~~~~~~ 76 (565)
..+|.+|-.+|+.+|. +.+...+++....+.|+..++..-|.+++..+|.+.-.|+. ++.|.....+. +.
T Consensus 224 ~qA~~cy~rAI~~~p~----n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~-e~ 298 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS----NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER-ER 298 (895)
T ss_pred HHHHHHHHHHHhcCCc----chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH-HH
Confidence 3589999999999998 78888889999999999999999999999999944433332 44444444433 77
Q ss_pred HHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------cc-cc----cH
Q 008442 77 VRDVYSRATKNCPW-----VGELWVRSLLSLERSRASEEEISTVFEKSLL-------------------CA-FS----TF 127 (565)
Q Consensus 77 ~~~v~erAl~~~p~-----~~~lW~~yi~~le~~~~~~~~~~~if~ral~-------------------~~-~~----~~ 127 (565)
+.++++-++..+.. ...|...-+............+...-.+-++ +. .. ..
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 88999999984421 1123222111121111111112111111000 00 00 01
Q ss_pred HH-HHHHHHHHHH------HHHHHhhccc-----cchhhhhHHHH---HHHHHHHHHHHHhhhcC-CchhHHHHHHHHHH
Q 008442 128 EE-YLDLFLTRID------GLRRRILFSG-----EVEGVLDYSLI---RETFQRASDYLSEQMKN-TDGLLRLYAYWAHL 191 (565)
Q Consensus 128 ~~-~~~~~~~~~~------~~~r~~~~~~-----~~e~~~~~~~~---~~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~ 191 (565)
.. .+.+.+...+ ++-......+ .++-+.|+..+ ..-|..|+.++...... .....-+|...+..
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 11 1222211110 1110000000 01111222111 13356788887654432 22224488888999
Q ss_pred HHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
+..++ .++.|...|+++|...|++.++-+..+.+....|+.++|-++++..+
T Consensus 459 ~~~l~-e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELG-EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHh-hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99988 99999999999999999999999999999999999999999998865
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.12 E-value=1.9e-05 Score=62.28 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=65.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC----CeEEEE
Q 008442 392 CTAFLSNINLKATYEDLRRFFSD--VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL----GKKLSI 464 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~----g~~l~v 464 (565)
+||.|+|+|...+.++|.+++.. .|....+-++.|-.++-+.|||||.|.+++.|..-.. .+|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998854 3677888899998888999999999999999988887 6887764 446677
Q ss_pred eecCC
Q 008442 465 ARSNP 469 (565)
Q Consensus 465 ~~a~~ 469 (565)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77754
No 155
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.09 E-value=0.00075 Score=75.23 Aligned_cols=263 Identities=9% Similarity=0.012 Sum_probs=153.6
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
.+..+...+..... .+...|...++...+.|..+.+..+|++... .+...|...+...... +..+.+..+|+.
T Consensus 243 ~~~l~~~~~~~g~~---~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~-g~~~eA~~lf~~ 315 (697)
T PLN03081 243 GQQLHCCVLKTGVV---GDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALH-GYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHhCCC---ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 34445544444321 1455777788888888888888888887643 4666777777655443 366778888888
Q ss_pred HHHc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHHHHHhhccccch-hhhhH
Q 008442 84 ATKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTRIDGLRRRILFSGEVE-GVLDY 157 (565)
Q Consensus 84 Al~~-~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~e-~~~~~ 157 (565)
.... +..+...+..-|..+-. .+.++.+..++..+++..+. .+...+..+....+......++....+ +..-|
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~ 394 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSR-LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHh-ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH
Confidence 8763 22233445444443333 56677888888887765422 233333333221111111111111100 00112
Q ss_pred HHHHHH------HHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc--cchHHHHHHHHHHHH
Q 008442 158 SLIRET------FQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS--GAMLEAWQSYISMEI 228 (565)
Q Consensus 158 ~~~~~~------~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~--~~~~~lw~~yi~~e~ 228 (565)
..+... +++|++++...... ..+....+...+.-....| .+++|..+|+.+.+.+ ......|...++...
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 222221 24455555443321 2222333444445555666 8999999999998753 334667888899999
Q ss_pred HcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
+.|.++.|.++++++- ......+|...+.--..+|+.+..+.+.++.
T Consensus 474 r~G~~~eA~~~~~~~~-----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 474 REGLLDEAYAMIRRAP-----FKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred hcCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999988752 2234568999998888999988877776654
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.08 E-value=4.2e-06 Score=80.69 Aligned_cols=84 Identities=26% Similarity=0.518 Sum_probs=74.7
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 389 TDECTAF-LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~-V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
....++| |++|+++++.++|+..|..+|.|..++++.++.+|.++|||||.|.+......++..+...+.|+++.|...
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 4455666 999999999999999999999999999999999999999999999999988888876667789999999998
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.|.+.
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 87654
No 157
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.00013 Score=67.15 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch--hhHHHHHHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV--GNVVRDVYSR 83 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~--~~~~~~v~er 83 (565)
..|+.+|..+|. +.+.|..........|+++.+...|++|+...|.+.++|..|+..+....+. .+.+..++++
T Consensus 60 ~~l~~~L~~~P~----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 60 QALQDKIRANPQ----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 456666777776 8889999999888999999999999999999999999999998754333323 4779999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
|++..|.....|..... .....++++++...|++++...++
T Consensus 136 al~~dP~~~~al~~LA~-~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 136 ALALDANEVTALMLLAS-DAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHhCCCChhHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999988887766654 334478899999999999875544
No 158
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=98.07 E-value=4.8e-05 Score=63.30 Aligned_cols=108 Identities=17% Similarity=0.310 Sum_probs=79.1
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc---C-CchhHHHHHHHHHhcCCCC---------HHHHHHHHHHHH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---G-DPGRVQLLYERAITDFPVS---------SDLWLDYTQYLD 68 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~---~-~~~~~~~lyERal~~~p~~---------~~lW~~Y~~~l~ 68 (565)
...|..||..|.... ....-++.|..||+|...+ | .......++|||+..+-.+ ..+|+.|+++..
T Consensus 2 ~~~r~~~e~~i~~~~-~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~ 80 (125)
T smart00777 2 EQQRQAFEQELQDLY-EGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCD 80 (125)
T ss_pred hHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcC
Confidence 357999999996432 2233578999999997753 2 3446789999999986433 359999998641
Q ss_pred HhcchhhHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008442 69 KTLKVGNVVRDVYSRATKNC-P-WVGELWVRSLLSLERSRASEEEISTVFEK 118 (565)
Q Consensus 69 ~~~~~~~~~~~v~erAl~~~-p-~~~~lW~~yi~~le~~~~~~~~~~~if~r 118 (565)
+ ..++|.-..++- + ....+|..|+.++|. .+...++.+||+.
T Consensus 81 ----d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 81 ----E---PRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred ----C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Confidence 2 467888777643 3 356799999998887 6788999999875
No 159
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=3.1e-06 Score=85.14 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=64.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
+....+|+|-|||..++.++|..+|+.||+|+.|+. +-..+|.+||+|-|.-+|++|++ +++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999999999999999999999999765 44567999999999999999998 899999998877
No 160
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.04 E-value=0.0097 Score=62.14 Aligned_cols=246 Identities=17% Similarity=0.166 Sum_probs=149.3
Q ss_pred ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc---
Q 008442 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--- 87 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~--------~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~--- 87 (565)
+|....+-..........|.++.+..+|++||.. +|.-...-..|+.++. ..+...++..+|++||..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence 3334455555555556678999999999999998 4444444444665544 444667799999999972
Q ss_pred -C----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------cccHHHHH-HHHHHHHHHHHHHhhccccchhh
Q 008442 88 -C----PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-------FSTFEEYL-DLFLTRIDGLRRRILFSGEVEGV 154 (565)
Q Consensus 88 -~----p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~-------~~~~~~~~-~~~~~~~~~~~r~~~~~~~~e~~ 154 (565)
+ |....+...-.. +--..+.+.+++..+++|+..- .+.+...+ .+...+. . .
T Consensus 274 ~~G~~h~~va~~l~nLa~-ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--~------~------ 338 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAV-LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--S------M------ 338 (508)
T ss_pred hcCCCCHHHHHHHHHHHH-HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--H------h------
Confidence 2 222233333111 2233578888888888888521 11111111 1111111 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCc-hhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----cc-----hHHHHHHHH
Q 008442 155 LDYSLIRETFQRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS----GA-----MLEAWQSYI 224 (565)
Q Consensus 155 ~~~~~~~~~~~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~----~~-----~~~lw~~yi 224 (565)
.+++.+...++++...+...+...+ ....+...++.++...| .+++|+++|+++|+.. .. ...+|.--.
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 1344555666777777665555433 55667778888888888 9999999999999873 21 235777666
Q ss_pred HHHHHcCChHHHHHHHHHHHhc--ccCCCCcHHHHHHHHHHH---HHhCCHHHHHHHHHHHhhH
Q 008442 225 SMEIELDHINEARSIYKRCYSK--RFTGTGSEDICHAWLRFE---REYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 225 ~~e~~~~~~~~aR~i~~~al~~--~~~~~~~~~i~~~~~~fE---~~~G~~~~~~~~~~k~~~~ 283 (565)
.+ .+.+.+..|-.+|.+++.. .+..+.| ++...|..+- +.-|+.+.+.+..+++...
T Consensus 418 ~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 418 AY-EELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HH-HHhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 66 5677788888888887543 2333333 3444454443 4458888777776666533
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.01 E-value=2.4e-05 Score=73.81 Aligned_cols=77 Identities=14% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..-+|||||-+.+|++||-+.....| .+.++.+..++.+|.++|||.|...+..++.+.+. +-.+.|.|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35689999999999999999887776 46778888888899999999999999998888888 6778899986555443
No 162
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00043 Score=70.68 Aligned_cols=225 Identities=15% Similarity=0.121 Sum_probs=137.1
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
++.|++..+..+||-||...|.+.+.|..... ....+.....+...+.||+..-|...++-....-..- ..+.-..+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~-~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGI-TQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhh-HhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHH
Confidence 34677888999999999999999999997764 2223334456889999999999988665433221111 112223455
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHH---hhcc--ccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 008442 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRR---ILFS--GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (565)
Q Consensus 114 ~if~ral~~~~~~~~~~~~~~~~~~~~~~r~---~~~~--~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (565)
..++.-|...+...+ ++.. ...+ +...+...+..+...|-.+..... .. ....+...+
T Consensus 374 ~~L~~Wi~~~p~y~~------------l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~---~~--~DpdvQ~~L 436 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVH------------LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP---TK--IDPDVQSGL 436 (579)
T ss_pred HHHHHHHHhCccchh------------ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC---CC--CChhHHhhh
Confidence 555555543333111 0000 0000 011111122333344443333221 11 123445555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhC
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G 268 (565)
.-|+.-.+ ++++|..+|+.||...|+++.+|..+.--...-...+.|..-|.+|++.. +.....++.+=..|=
T Consensus 437 GVLy~ls~-efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 437 GVLYNLSG-EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHhcch-HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CCeeeeehhhhhhhh
Confidence 54554445 99999999999999999999999999999888889999999999999731 233445555655565
Q ss_pred CHHHHHHHHHHHhhHH
Q 008442 269 TLEDFDHSVQKVTPRL 284 (565)
Q Consensus 269 ~~~~~~~~~~k~~~~~ 284 (565)
++..+++|+.-.+..+
T Consensus 510 NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 6666666665554443
No 163
>PLN03077 Protein ECB2; Provisional
Probab=98.00 E-value=0.0034 Score=71.82 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=62.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHh
Q 008442 190 HLEQSMGKDMVSARGVWERLLKIS--GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (565)
Q Consensus 190 ~~e~~~~~~~~~ar~i~e~~l~~~--~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~ 267 (565)
....+.| .+++|..+|+.+...+ ..+...+...++...+.|++++|.++++..- ......+|...+.--+.+
T Consensus 597 ~a~~~~g-~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-----~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 597 CACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-----ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHhhcC-hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHc
Confidence 3344556 8889999999888542 3346788888888889999999999988762 223457888888877888
Q ss_pred CCHHHHHHHHHHH
Q 008442 268 GTLEDFDHSVQKV 280 (565)
Q Consensus 268 G~~~~~~~~~~k~ 280 (565)
|+.+-.+.+.++.
T Consensus 671 ~~~e~~e~~a~~l 683 (857)
T PLN03077 671 RHVELGELAAQHI 683 (857)
T ss_pred CChHHHHHHHHHH
Confidence 9888776655444
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0027 Score=58.59 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=131.3
Q ss_pred cCCchhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhc--chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHH
Q 008442 36 SGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTL--KVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~--~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~ 110 (565)
.-+++.+..+++..+...+.. .++|.-|=.-...-. ...+.+..++.+-...+|.|..+=..+...+|. .+..+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-TGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhchh
Confidence 347788888998888876544 789988744322211 234557788888777889999887777776776 57778
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH
Q 008442 111 EISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAH 190 (565)
Q Consensus 111 ~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~ 190 (565)
++.++|++.++-.+.....+. ..+-.++. .++ .. .+.+...+|++.++ ...+.|...++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~K----RKlAilka---~GK------~l----~aIk~ln~YL~~F~----~D~EAW~eLae 162 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRK----RKLAILKA---QGK------NL----EAIKELNEYLDKFM----NDQEAWHELAE 162 (289)
T ss_pred hHHHHHHHHhccCcchhHHHH----HHHHHHHH---cCC------cH----HHHHHHHHHHHHhc----CcHHHHHHHHH
Confidence 899999999875443222111 11101100 011 11 33344445555544 44678889999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhc
Q 008442 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HINEARSIYKRCYSK 246 (565)
Q Consensus 191 ~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~---~~~~aR~i~~~al~~ 246 (565)
++...+ ++.+|-=+||.++-..|.++.+...|++..-..| |++.+|+.|.+++..
T Consensus 163 iY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 163 IYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 998888 9999999999999999999999999999875554 788899999999973
No 165
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00091 Score=69.49 Aligned_cols=186 Identities=9% Similarity=0.025 Sum_probs=127.5
Q ss_pred cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 008442 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~i 115 (565)
.++++.+..+|+.+=...|.-.+=---|-.-|++-. +.-..--+.+--+..-|.+++-|+..-..+- .+++.+.+...
T Consensus 366 l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq-~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS-LQkdh~~Aik~ 443 (638)
T KOG1126|consen 366 LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ-DEVALSYLAQDLIDTDPNSPESWCALGNCFS-LQKDHDTAIKC 443 (638)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH-hhHHHHHHHHHHHhhCCCCcHHHHHhcchhh-hhhHHHHHHHH
Confidence 356778889999988887765543333333333222 1111223445555677899999998765333 35778889999
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc
Q 008442 116 FEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195 (565)
Q Consensus 116 f~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~ 195 (565)
|+||++..+.-...|.. +... ..+.+.|+.|..++..++...+..+..|--..-++.+.
T Consensus 444 f~RAiQldp~faYayTL-----lGhE----------------~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 444 FKRAIQLDPRFAYAYTL-----LGHE----------------SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHHhhccCCccchhhhh-----cCCh----------------hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence 99999865532222211 1000 12346677777777777776666677776666666676
Q ss_pred CCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 196 GKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+ ..+.|.--|++|+..+|.+..+-..+..++...|..++|-.+|++|+.
T Consensus 503 e-k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 503 E-KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred c-hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 7 788899999999999999888888888899999999999999999986
No 166
>PLN02789 farnesyltranstransferase
Probab=97.95 E-value=0.0027 Score=62.92 Aligned_cols=200 Identities=11% Similarity=0.012 Sum_probs=125.5
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-hhHHHHHHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSR 83 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~-~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~-~~~~~~v~er 83 (565)
..++.+|.-+|. ++.+|..-.......+ +...+...+++++..+|.++.+|..-.-.+...... .+...+.+++
T Consensus 58 ~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 58 DLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 345556666665 8899987777666666 568899999999999999999998665444333321 2457889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~ 161 (565)
++..-|.+...|....-.++. .+..++....++++|...+.. .|.+..+...... ... .. .
T Consensus 134 al~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~------~l~-------~~---~ 196 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP------LLG-------GL---E 196 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc------ccc-------cc---c
Confidence 999999999999887654444 566788889999999865543 3322222111100 000 00 1
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHccchHHHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK---DMVSARGVWERLLKISGAMLEAWQSYISM 226 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~---~~~~ar~i~e~~l~~~~~~~~lw~~yi~~ 226 (565)
..++..++++...+...+.....|.+..-+....+. ....|..++..++...+.+...--..++.
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 123344555555555445556677777666655221 23457788888887666655433333443
No 167
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.93 E-value=0.0021 Score=69.54 Aligned_cols=239 Identities=12% Similarity=0.104 Sum_probs=148.6
Q ss_pred hhhHHHHHHHhcCC-CCChHh---HHHHHH--HHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH
Q 008442 3 NARAHLEEQISRQD-LSDSEK---FQQYMI--YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (565)
Q Consensus 3 ~~R~~~E~~l~~~~-~~~~~~---~~~W~~--yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~ 76 (565)
.++..|..++.... .++.+. ..+=+. .....+..++...+...|...|..+|...+-.+..+.+....+ +...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~-~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN-NLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-CcHH
Confidence 46777888876621 122212 222222 2334456678889999999999999999998888876554444 4556
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q 008442 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (565)
Q Consensus 77 ~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~ 156 (565)
+...+..++.....++.+|.-+-. +.......--+..-|++.++.+......|..+-+.- -++.+...... +
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~-~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~r------n 620 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGN-LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSR------N 620 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHH-HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhccccc------C
Confidence 888999999987778889887653 333233333344445554443222112222222221 11111111111 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChH
Q 008442 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYA--YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~--~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~ 234 (565)
-...+..+++|++.+.+.+...+.. +|. -.+-+....+ .+..|+.||.+....-.+...+|+..+..+..+|++-
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpkN--~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPKN--MYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcch--hhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 1234466777777776666544332 221 1233445556 8999999999999987777899999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCc
Q 008442 235 EARSIYKRCYSKRFTGTGS 253 (565)
Q Consensus 235 ~aR~i~~~al~~~~~~~~~ 253 (565)
.|.++|+.++.+.+..+.+
T Consensus 698 ~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HHHHHHHHHHHHhcccCCH
Confidence 9999999999865544444
No 168
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.93 E-value=1.7e-05 Score=81.72 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
+.....|||+||++.++++.|-..|..||+|.+++|+..+. ....+-||||.|-+..+|++|+. |+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45568899999999999999999999999999999987651 23456799999999999999998 899999999999
Q ss_pred EeecCC
Q 008442 464 IARSNP 469 (565)
Q Consensus 464 v~~a~~ 469 (565)
+.++++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988854
No 169
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00069 Score=58.96 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=89.0
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
.|+.+|..+|. + |..........|+++.+...|++++...|.+...|...+.-+.. .+..+.+...|++|+.
T Consensus 15 ~~~~al~~~p~----~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 15 ILKQLLSVDPE----T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHcCHH----H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 45666666653 3 44455556678999999999999999999999999999875554 4477889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~ 126 (565)
..|.....|......+.. .+..+++...|.+|+...+..
T Consensus 87 l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKM-MGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred cCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence 999999998887764544 688999999999999866553
No 170
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0042 Score=63.53 Aligned_cols=233 Identities=14% Similarity=0.146 Sum_probs=127.4
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
+++..+..+|. +.....-+|-...+.|+..+...+=-+.+...|.++--|..-.-|..... ..+++|..|-+|..
T Consensus 266 it~~lle~dpf----h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-k~seARry~SKat~ 340 (611)
T KOG1173|consen 266 ITEELLEKDPF----HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-KYSEARRYFSKATT 340 (611)
T ss_pred HhHHHHhhCCC----CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-CcHHHHHHHHHHhh
Confidence 34444555555 44555555555455555444444445555566666666666555544333 33446666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHH--------HHhhcccc------
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLR--------RRILFSGE------ 150 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~--------r~~~~~~~------ 150 (565)
.-|..+.-|+.|...+-. .+.-+++...|.+|-+.-.+ ....|+.+.......+. ...+....
T Consensus 341 lD~~fgpaWl~fghsfa~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred cCccccHHHHHHhHHhhh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 556666666666554432 23345555555555542211 12222222211111000 00000000
Q ss_pred ---ch-hhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHH
Q 008442 151 ---VE-GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (565)
Q Consensus 151 ---~e-~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~ 226 (565)
+. ...++..+...|+.+....+........+..++........+++ ..+.|...|+++|...|.++...-...=.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 00 01233344444555544333333222235566777777888888 88899999999999999888877666666
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 008442 227 EIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~~ 246 (565)
.-..|+++.|...|.++|-.
T Consensus 499 y~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 67799999999999999863
No 171
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=1.5e-05 Score=81.19 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....+.+||++||...++..+.++...||.+....++.+..+|.++||||.+|-++.....|+. +||..+++.+|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34567899999999999999999999999999999999999889999999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
.+.+...
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 9876543
No 172
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.87 E-value=3.2e-05 Score=57.83 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=46.5
Q ss_pred CeEEEcCCCCCCCHH----HHHHHhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 392 CTAFLSNINLKATYE----DLRRFFSDVGG-VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~----~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
..|||.|||.+.+.. -|++++..||. |.+| + .|.|+|-|.+++.|..|.+ |+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999998865 46677778974 4443 2 2689999999999999998 89999999999999
Q ss_pred ecCC
Q 008442 466 RSNP 469 (565)
Q Consensus 466 ~a~~ 469 (565)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 173
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.86 E-value=0.00065 Score=62.59 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS--EEEISTVFE 117 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~--~~~~~~if~ 117 (565)
+.....|+++|..+|.+.+.|........ ..++.+.+...|++|++..|....+|..|...+-...+. .+++..+|+
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34445555666666666666655554333 223445555566666665555555555555432222222 244444454
Q ss_pred HHHh
Q 008442 118 KSLL 121 (565)
Q Consensus 118 ral~ 121 (565)
+++.
T Consensus 135 ~al~ 138 (198)
T PRK10370 135 KALA 138 (198)
T ss_pred HHHH
Confidence 4444
No 174
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.86 E-value=0.0048 Score=58.60 Aligned_cols=186 Identities=15% Similarity=0.040 Sum_probs=123.0
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHH--
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL-- 94 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~l-- 94 (565)
+...+.+...+......|+.+.+...|++++..+|.++ ..|...+..+. ..++.+.+...|+++++..|.+..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34567788888777888999999999999999999886 45555555433 3457888999999999999976543
Q ss_pred -HHHH-HHHHHH------hcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 008442 95 -WVRS-LLSLER------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (565)
Q Consensus 95 -W~~y-i~~le~------~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~ 166 (565)
|..- +..+.. ..+..+.+...|++++...+........++. .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--~~-------------------~~~~~--- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR--MD-------------------YLRNR--- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH--HH-------------------HHHHH---
Confidence 2111 111111 1134566777787777654432111111000 00 00000
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~---~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+ .......+.++...+ ++..|...|+.++..+|+ ..+.|...+......|+.+.|..+++..
T Consensus 165 ----~----------~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 165 ----L----------AGKELYVARFYLKRG-AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred ----H----------HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 001123455666777 999999999999999765 3679999999999999999999988887
Q ss_pred Hh
Q 008442 244 YS 245 (565)
Q Consensus 244 l~ 245 (565)
..
T Consensus 230 ~~ 231 (235)
T TIGR03302 230 GA 231 (235)
T ss_pred Hh
Confidence 64
No 175
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.86 E-value=4.8e-05 Score=75.54 Aligned_cols=78 Identities=23% Similarity=0.390 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
.....|-+.+||+.|++++|.+||+..-.|.. |.++.+. .+++.|-|||.|++.+.|+.|+..+...|+-|-|.|-.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 35578889999999999999999998755544 5667775 788999999999999999999998888888888888665
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.84 E-value=0.043 Score=57.98 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=53.8
Q ss_pred chhHHHHHHH--HHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 179 DGLLRLYAYW--AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 179 ~~~~~l~~~~--a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++..-+|..| ++.+...+ ++++|.++.+++|...|..+++.+.-+.+....|++..|-..++.|-.
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455567554 77777778 899999999999999999899999889999889998888888888753
No 177
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.023 Score=54.39 Aligned_cols=224 Identities=12% Similarity=0.142 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC-C--HHH------H
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW-V--GEL------W 95 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~-~--~~l------W 95 (565)
.|..=++|... ..++++..+|-..+...|..+++=+.... +...-+..+++..|.+--+.. |. . ..+ =
T Consensus 38 ~Yv~GlNfLLs-~Q~dKAvdlF~e~l~~d~~t~e~~ltLGn-LfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLLS-NQPDKAVDLFLEMLQEDPETFEAHLTLGN-LFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHhHHHHHhh-cCcchHHHHHHHHHhcCchhhHHHHHHHH-HHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 45555666554 36789999999999999999998888777 444555777777777666552 32 1 112 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc-c--ccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Q 008442 96 VRSLLSLERSRASEEEISTVFEKSLLCA-F--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (565)
Q Consensus 96 ~~yi~~le~~~~~~~~~~~if~ral~~~-~--~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~ 172 (565)
..|+. .+-++.++.+|......+ + ......+.++. ...-|++|++...
T Consensus 115 ~Dym~-----aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ------------------------~treW~KAId~A~ 165 (389)
T COG2956 115 RDYMA-----AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ------------------------ATREWEKAIDVAE 165 (389)
T ss_pred HHHHH-----hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH------------------------HhhHHHHHHHHHH
Confidence 22221 355678888888766532 1 11222223332 2233444444433
Q ss_pred hhhcC--CchhHHHHHHHHHHH--HHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 008442 173 EQMKN--TDGLLRLYAYWAHLE--QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (565)
Q Consensus 173 ~~~~~--~~~~~~l~~~~a~~e--~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~ 248 (565)
..... .+....+-.+|..+- ....++.++|+..+.++++.+|+++..-+...+.+...|+++.|.+.|++.++.
T Consensus 166 ~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-- 243 (389)
T COG2956 166 RLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-- 243 (389)
T ss_pred HHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--
Confidence 22221 222234444444332 233448889999999999999999998899999999999999999999999874
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 249 TGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 249 ~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
+.+.-..+......-=...|.++.....+.+++.
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222223333333333345777777666666553
No 178
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.0013 Score=56.45 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
..|+.+|...|. +...-..++......++...+...|++++...|.+..+|...+..+... ++.+.+..+|++++
T Consensus 4 ~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSE----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChh----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 357777777775 5666666777777889999999999999999999999999988766544 46778999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
...|.+..+|..... +....++.+.+...|++++...+.
T Consensus 79 ~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 79 ALDPDDPRPYFHAAE-CLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred hcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence 999998888877655 334468899999999999986544
No 179
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.79 E-value=3.2e-05 Score=48.13 Aligned_cols=30 Identities=43% Similarity=0.909 Sum_probs=20.0
Q ss_pred CchhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008442 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYL 67 (565)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l 67 (565)
+.+.++.+|+++|..+|.+.++|+.|++|+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 445666677777777777777777776664
No 180
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.011 Score=65.50 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=137.2
Q ss_pred ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH------
Q 008442 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG------ 92 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~------ 92 (565)
++.+..+|...+......++++.+..+.+.++..+|....+|....- +..+.+..+.+..| +++...+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 45688999999999989999999999999999999999998887665 33233233333333 5665554322
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 008442 93 -------------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (565)
Q Consensus 93 -------------~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~ 159 (565)
.........++ ..+..+++..+|+++|...+......-.+...+. +. +++.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a-------------e~--dL~K 167 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYE-------------EE--DKEK 167 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-------------Hh--hHHH
Confidence 11111112122 2466788999999999866543222111111110 00 2233
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChHHHH
Q 008442 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~~aR 237 (565)
+...+.+|+..+-. ...+..+...|..+......+++---.|.++++.. +...+.+|....+.+...++++.+-
T Consensus 168 A~~m~~KAV~~~i~----~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 168 AITYLKKAIYRFIK----KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHHh----hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 34444444443211 11122233334444333333555555666666665 4556778888888888889999999
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
.+++.+|.. ..++...+...-..|-..|++-..+++++..
T Consensus 244 ~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 244 YILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred HHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHHHH
Confidence 999999973 2223323333333344666665555555543
No 181
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.78 E-value=0.00041 Score=58.53 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHh--hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChH
Q 008442 159 LIRETFQRASDYLSE--QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHIN 234 (565)
Q Consensus 159 ~~~~~~~~a~~~l~~--~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~ 234 (565)
.+..++++|+..+.. .+.+...++++|+.|+++- +.++.+|..+... ......+|..|+.++...|+++
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB-------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc-------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 455677777777643 3445666788888887543 2788999999886 4556889999999999999999
Q ss_pred HHHHHHHHHH
Q 008442 235 EARSIYKRCY 244 (565)
Q Consensus 235 ~aR~i~~~al 244 (565)
.|.+||..+|
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 182
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.0048 Score=64.29 Aligned_cols=177 Identities=12% Similarity=0.069 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 45 LYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 45 lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
+-+..+...|++++-|....... ...++.+.+...|+||+..-|...--+...-. .-.....+|.+...|..||...+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcf-SLQkdh~~Aik~f~RAiQldp~faYayTLlGh-E~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCF-SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGH-ESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchh-hhhhHHHHHHHHHHHhhccCCccchhhhhcCC-hhhhhHHHHhHHHHHHhhhcCCc
Confidence 44555566677777777766643 33446666777777777766643211111000 00112345666666666666555
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHH
Q 008442 125 STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (565)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~ 204 (565)
..+..|..+-+.|. -.+-|+.|.-++..++..++....+...+..++.+.+ ..++|..
T Consensus 487 rhYnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k-~~d~AL~ 544 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK-RKDKALQ 544 (638)
T ss_pred hhhHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh-hhhHHHH
Confidence 44444443333221 1144566666666666666655556666666666666 6777777
Q ss_pred HHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 205 i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+|++|+...|.++.--..-+......++.+.|-..++..-.
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 77777777666655555555555566666777666666543
No 183
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.028 Score=61.29 Aligned_cols=270 Identities=10% Similarity=0.025 Sum_probs=126.5
Q ss_pred hHHHHHHHhcCCCCCh-HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--chhhHHHHHH
Q 008442 5 RAHLEEQISRQDLSDS-EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVY 81 (565)
Q Consensus 5 R~~~E~~l~~~~~~~~-~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~v~ 81 (565)
=..|..+|..+|..-+ .....|..+.+ .+..+.+...|+||++.+|.+++.-+....+..... ........++
T Consensus 184 l~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 184 LKYYKKALRINPACKADVRIGIGHCFWK----LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLL 259 (1018)
T ss_pred HHHHHHHHhcCcccCCCccchhhhHHHh----ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 3456666666553211 12334544433 355666777777777777777776555544333222 1223466677
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc-HH--HHH---HHHHHHHHHHHHHhhcc-------
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST-FE--EYL---DLFLTRIDGLRRRILFS------- 148 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~-~~--~~~---~~~~~~~~~~~r~~~~~------- 148 (565)
.+|....|.++.+-......+ -..++.+.+-.+.+-|+...... .. .+. .-+....++......+.
T Consensus 260 ~~ay~~n~~nP~~l~~LAn~f-yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 260 QRAYKENNENPVALNHLANHF-YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHhhcCCCcHHHHHHHHHH-hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 777765555544322222111 11355556666666655433211 00 011 11111111111111110
Q ss_pred cc-c---hhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHccchHHHHH
Q 008442 149 GE-V---EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM---GKDMVSARGVWERLLKISGAMLEAWQ 221 (565)
Q Consensus 149 ~~-~---e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~---~~~~~~ar~i~e~~l~~~~~~~~lw~ 221 (565)
+. + -.+.....-+.-++.+..++...+...+..+........++... ....++|..+..+++...|...+.|+
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 00 0 00112222333445555555555544444444444444443332 11356888888888888888888998
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccc--CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 222 SYISMEIELDHINEARSIYKRCYSKRF--TGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~~~~--~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
..+.+... +++-.+-..|.+|+.... ....|..+...-..+--..|+++.+..-+..+
T Consensus 419 ~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 419 ELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 88887644 344444666666652210 11234444443333333345554444444333
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.72 E-value=0.007 Score=67.53 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=153.6
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
++...|++.+...... +...|...+......+....+..++..++... ..+..+|...+....+.+ ..+.+..+|
T Consensus 207 ~A~~lf~~M~~~g~~p---~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf 282 (697)
T PLN03081 207 EAFALFREMWEDGSDA---EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVF 282 (697)
T ss_pred HHHHHHHHHHHhCCCC---ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHH
Confidence 4567777777654321 34567777777777888888889988887763 345567777777555444 677899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHH------------HHHHHhhcc
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRID------------GLRRRILFS 148 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~-~~~~~~~~~~~~~~------------~~~r~~~~~ 148 (565)
+.... .+...|..-|..+.+ .+..+++..+|++....... ....|..+...+.. .+.+.....
T Consensus 283 ~~m~~---~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 283 DGMPE---KTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HhCCC---CChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 87643 355678887765544 68889999999998764321 22223322222211 111111000
Q ss_pred ccc--hhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-ccchHHHHHHHHH
Q 008442 149 GEV--EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYIS 225 (565)
Q Consensus 149 ~~~--e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~lw~~yi~ 225 (565)
+.. ...++.-.-...++.|...+..... +....|...+.-+.+.| +.++|.++|++++.. ...+...+...+.
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G-~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG-RGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 000 0000100001123444444443322 12234566666666777 788888888887765 3333555666777
Q ss_pred HHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 226 MEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 226 ~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
-....|..+.|..+|+..... .........|...++.--+.|.++.+.+.+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~-~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSEN-HRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHh-cCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 677778888888888887652 12222223455566666667777777766654
No 185
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.72 E-value=0.0056 Score=66.97 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=98.0
Q ss_pred hcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHH
Q 008442 51 TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (565)
Q Consensus 51 ~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~ 130 (565)
..+|.+.+.-...+.... ..+..+.+..++++++..+|.....+..|+..|-+ .+.++++...+++++...+..
T Consensus 80 ~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~---- 153 (694)
T PRK15179 80 RRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSS---- 153 (694)
T ss_pred HhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCC----
Confidence 345666666666555333 33455667777777777777777777777764443 456677766666666544332
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008442 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (565)
Q Consensus 131 ~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (565)
.......+.....+| .+++|..+|++++
T Consensus 154 ---------------------------------------------------~~~~~~~a~~l~~~g-~~~~A~~~y~~~~ 181 (694)
T PRK15179 154 ---------------------------------------------------AREILLEAKSWDEIG-QSEQADACFERLS 181 (694)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHhc-chHHHHHHHHHHH
Confidence 222223444445667 8999999999999
Q ss_pred HHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 211 ~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
..+|+....|+.|....+..|+.+.|...|++++..
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988888999999999999999999999999999873
No 186
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.031 Score=55.25 Aligned_cols=228 Identities=13% Similarity=0.028 Sum_probs=113.6
Q ss_pred HHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC
Q 008442 9 EEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88 (565)
Q Consensus 9 E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~ 88 (565)
-+.++..+. +....+...+.+...|+...+...||.+...+|....---.|+-.+...+ ..+....+-.+-+...
T Consensus 222 le~~~~lr~----NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 222 LHDNTTLRC----NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-GCEQDSALMDYLFAKV 296 (564)
T ss_pred HHhhccCCc----cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhh
Confidence 334455554 88889999999999999999999999999999988887777776554433 4444555555554433
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHH----------HHHHHH-----HH--HHhhccccc
Q 008442 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF----------LTRIDG-----LR--RRILFSGEV 151 (565)
Q Consensus 89 p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~----------~~~~~~-----~~--r~~~~~~~~ 151 (565)
.+...-|.--+. +-...++++.+...-+++|.........+|.-- .+.+.+ ++ |--.+.+.+
T Consensus 297 ~~ta~~wfV~~~-~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 297 KYTASHWFVHAQ-LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hcchhhhhhhhh-hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 222233322221 111123344444444555543322222221000 000000 00 000011111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 008442 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (565)
Q Consensus 152 e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~ 231 (565)
+.++.+...+++.--|...+.. +...-..+.|.-.-.-++.-. .-++|.++++++|+..|.........+++....|
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~--~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR--MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch--hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 1111222222222222221111 111111111111011111111 2357888888888888888777777777777777
Q ss_pred ChHHHHHHHHHHHh
Q 008442 232 HINEARSIYKRCYS 245 (565)
Q Consensus 232 ~~~~aR~i~~~al~ 245 (565)
....+.+++++++.
T Consensus 453 ~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLI 466 (564)
T ss_pred ccchHHHHHHHHHh
Confidence 77788888888876
No 187
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.014 Score=54.00 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=109.7
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
+....++..+.+.-..+|.|..+=..++-+++... ....+.++|++-|..-|.+..+..+-+-.+-....+.+.|+.+-
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34455677788877888999999999998887655 56669999999999999998899888876666666666555543
Q ss_pred HHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHH
Q 008442 117 EKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS 194 (565)
Q Consensus 117 ~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~ 194 (565)
+=.-.+..+ .|++..+++. ....|++|.-+++..+-..|..+.++..|+++...
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~------------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYL------------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHH------------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 322222222 2332222222 23556666666666555555556677888888776
Q ss_pred cCC--ChHHHHHHHHHHHHHccchHHHH
Q 008442 195 MGK--DMVSARGVWERLLKISGAMLEAW 220 (565)
Q Consensus 195 ~~~--~~~~ar~i~e~~l~~~~~~~~lw 220 (565)
.|+ ++.-+|+.|+++++.++.+..-|
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 653 56789999999999988654433
No 188
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.021 Score=58.61 Aligned_cols=253 Identities=9% Similarity=-0.023 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
+.++-..-++-....+.+.....+++..+...|.+.....-+|.-+.... +......+=-+-++..|.++--|..-..+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~-~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELG-KSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc-ccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 56677777777777788889999999999999999998888887555443 33333344444555669888889775543
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc--cccHHHHHHHHHH--------HHHHHHHHhhcccc-ch-hhhhHHHH-HHHHHHHH
Q 008442 102 LERSRASEEEISTVFEKSLLCA--FSTFEEYLDLFLT--------RIDGLRRRILFSGE-VE-GVLDYSLI-RETFQRAS 168 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~--~~~~~~~~~~~~~--------~~~~~~r~~~~~~~-~e-~~~~~~~~-~~~~~~a~ 168 (565)
.-. .+...++|..|.+|.... ++..|....--.+ .--|-....+..+. .- -++..+-. ...+..|-
T Consensus 322 Yl~-i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLM-IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHH-hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 433 377899999999998644 3333322211111 00011111111111 00 01111112 13344555
Q ss_pred HHHHhhhcCCchhHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHc----cc---hHHHHHHHHHHHHHcCChHHHHHHH
Q 008442 169 DYLSEQMKNTDGLLRLYAYWAH-LEQSMGKDMVSARGVWERLLKIS----GA---MLEAWQSYISMEIELDHINEARSIY 240 (565)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~-~e~~~~~~~~~ar~i~e~~l~~~----~~---~~~lw~~yi~~e~~~~~~~~aR~i~ 240 (565)
.|+.+++..+|..+ +.....- +..... .+.+|..+|..++..- +. -..+|.......+.++.++.|...|
T Consensus 401 ~Ff~~A~ai~P~Dp-lv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALAIAPSDP-LVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHhcCCCcc-hhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 55555544322221 2222211 222223 6778888888888431 11 2346777778888999999999999
Q ss_pred HHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 241 ~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+++|. ..+.++ ..+..-.-.-..-|+++.+-..++|++
T Consensus 479 q~aL~-l~~k~~--~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALL-LSPKDA--STHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHH-cCCCch--hHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99987 223222 222222222234588888877777765
No 189
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.62 E-value=6.8e-05 Score=45.13 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~ 228 (565)
.+++||.||++.+..+|+ +..|+.|+.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 578899999999988865 889999999984
No 190
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.61 E-value=0.032 Score=58.19 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
+.-.|.-|.-.-....+++.+...|..||...|++..||.+.+ ++..++.+.+.....-.+-+...|....-|+.|+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls-lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS-LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4457888877766677778888888888888888888888865 366666666666677777777778777888888753
Q ss_pred HHHhcCCHHHHHHHH---HHHHhcccccHHHHH--HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 008442 102 LERSRASEEEISTVF---EKSLLCAFSTFEEYL--DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (565)
Q Consensus 102 le~~~~~~~~~~~if---~ral~~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~ 176 (565)
... .+....+..+. ++....+++ ...+- ...+-....+ . +. ..++.+.+.+...-.
T Consensus 153 ~~L-~g~y~~A~~il~ef~~t~~~~~s-~~~~e~se~~Ly~n~i~-----~--------E~----g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 153 QHL-LGEYKMALEILEEFEKTQNTSPS-KEDYEHSELLLYQNQIL-----I--------EA----GSLQKALEHLLDNEK 213 (700)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHH-----H--------Hc----ccHHHHHHHHHhhhh
Confidence 322 23334443433 333322222 11111 1111111000 0 00 123333333322111
Q ss_pred CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHH-HHcCChHHHHHHHHHHHh
Q 008442 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME-IELDHINEARSIYKRCYS 245 (565)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e-~~~~~~~~aR~i~~~al~ 245 (565)
..-....+...-+.++..++ .+++|-.+|..++..+|+++.....+.... .-.+..+....+|...-+
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~-~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLG-QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHh-hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 00011223334577888888 999999999999999999888776666655 244555555577777644
No 191
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.54 E-value=0.013 Score=59.36 Aligned_cols=202 Identities=8% Similarity=-0.085 Sum_probs=118.9
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD---LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~---lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~ 96 (565)
|+....|.....+....+++..+...|.++....+.+.+ .+...+. +....++.+.+..++++++...|.+...|.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~-~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEAL-SAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 445555555566666667777778888888887775533 4332222 222344677899999999999998887766
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 97 ---RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 97 ---~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
.+.. +-...+....+..++.......+..+.....+-..+. ...-+.+|...+..
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~---------------------~~G~~~~A~~~~~~ 139 (355)
T cd05804 82 LHLGAFG-LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE---------------------EAGQYDRAEEAARR 139 (355)
T ss_pred HhHHHHH-hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 2222 1111233344444444322222221111111001000 01113333333333
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM----LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~----~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+...+.....+..++.+....+ ++++|...+++++...+.. ...|..++.+....|+++.|..+|++++.
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g-~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQG-RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 33333333455667788888888 9999999999999875422 34677888899999999999999999864
No 192
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.53 E-value=0.018 Score=64.29 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=119.6
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHH
Q 008442 33 EQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (565)
Q Consensus 33 e~~~~~~~~~~~lyERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~ 111 (565)
....|+...+...|++++...|.+. .+. +++.++... +..+.++.++++|+...|.....-..-.. +-...+..+.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~-ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAAR-AYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHH-HHHHcCCHHH
Confidence 4567999999999999999999995 444 776654433 46678999999999433333322221122 3334688999
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 008442 112 ISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (565)
Q Consensus 112 ~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (565)
+..+|++++...+.....+..+...+.+. .-.++|+..+.......+. ...+...+.+
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~---------------------~q~~eAl~~l~~l~~~dp~-~~~~l~layL 178 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADA---------------------GRGGVVLKQATELAERDPT-VQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhc---------------------CCHHHHHHHHHHhcccCcc-hHHHHHHHHH
Confidence 99999999988776655554443333211 2223333444333332222 2223444555
Q ss_pred HHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 192 EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
....+ +...|..+|++++...|++.++...|+......|-...|-++.+
T Consensus 179 ~~~~~-~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 179 NRATD-RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHhcc-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 54445 55569999999999999999999999999988887666655544
No 193
>PLN03077 Protein ECB2; Provisional
Probab=97.51 E-value=0.024 Score=64.97 Aligned_cols=257 Identities=8% Similarity=-0.008 Sum_probs=135.6
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
++..|+..+..... .+...|...|+...+.|+.+.+..+|++... .+...|...+.-+.... ..+.+..+|++
T Consensus 408 a~~l~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g-~~~eA~~lf~~ 480 (857)
T PLN03077 408 GVKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNN-RCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHhCCC---cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 45666666655422 1455677777777777777778777777543 23445666655443322 44556666666
Q ss_pred HHHcCCCCHHHH-----------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcccccHH
Q 008442 84 ATKNCPWVGELW-----------------------------------VRSLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (565)
Q Consensus 84 Al~~~p~~~~lW-----------------------------------~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~ 128 (565)
.+..++.+...+ ...|..+. ..+.++++..+|+.. ......|.
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~-k~G~~~~A~~~f~~~-~~d~~s~n 558 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV-RCGRMNYAWNQFNSH-EKDVVSWN 558 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH-HcCCHHHHHHHHHhc-CCChhhHH
Confidence 654432111111 11122122 246667777777665 21111233
Q ss_pred HHHHHHHHHHHHHHH-----HhhccccchhhhhHHHHH------HHHHHHHHHHHhhhc--CCchhHHHHHHHHHHHHHc
Q 008442 129 EYLDLFLTRIDGLRR-----RILFSGEVEGVLDYSLIR------ETFQRASDYLSEQMK--NTDGLLRLYAYWAHLEQSM 195 (565)
Q Consensus 129 ~~~~~~~~~~~~~~r-----~~~~~~~~e~~~~~~~~~------~~~~~a~~~l~~~~~--~~~~~~~l~~~~a~~e~~~ 195 (565)
..+..+......... .+...+..-+...+..+. ..++++..++..... ...+....+...+++..+.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 333222111000000 000000000000111111 234555565554331 2334456677888999999
Q ss_pred CCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 008442 196 GKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (565)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (565)
| .+++|.++++++- ...+..+|...+.-...+++.+.+....++++. ..+. .+ ..+......--..|..+++.+
T Consensus 639 G-~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~-l~p~-~~-~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 639 G-KLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIFE-LDPN-SV-GYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred C-CHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCC-Cc-chHHHHHHHHHHCCChHHHHH
Confidence 9 9999999998762 233478999999988899999999998888876 2222 22 222222233345576665553
No 194
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.071 Score=55.73 Aligned_cols=199 Identities=17% Similarity=0.130 Sum_probs=119.2
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
|+.+.+...-.+++...+.+.-.|.-|.- +.+..+..+.+...|..|++.-|.+.+||-.... |..+.++.+-....-
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl-~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl-LQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGL-LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL-LQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHH-HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhhhhHHHHH
Confidence 55667777778888888888888888876 4455667778888889998888888888877543 555555555444444
Q ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcC----Cch----hHHHHHHH
Q 008442 117 EKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN----TDG----LLRLYAYW 188 (565)
Q Consensus 117 ~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~----~~~----~~~l~~~~ 188 (565)
.+.++-.+..-..|+.+.... . +...+..|...+..+... .++ ...+.++-
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~-------~--------------L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQ-------H--------------LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHH-------H--------------HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 444443322111122221111 1 112222222222221111 111 11222333
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKI---SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~---~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~ 265 (565)
.++..+.+ ..+. .++..... .-+...+-..-++++...++++.|..+|...+.+ .++-+..|..++.
T Consensus 192 n~i~~E~g-~~q~---ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 192 NQILIEAG-SLQK---ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHcc-cHHH---HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------CchhHHHHHHHHH
Confidence 44455555 4333 44444433 3344667778888999999999999999999974 2367788888888
Q ss_pred HhC
Q 008442 266 EYG 268 (565)
Q Consensus 266 ~~G 268 (565)
..|
T Consensus 262 ~lg 264 (700)
T KOG1156|consen 262 ALG 264 (700)
T ss_pred HHH
Confidence 888
No 195
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.49 E-value=0.0019 Score=56.25 Aligned_cols=91 Identities=9% Similarity=-0.065 Sum_probs=78.7
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|..++...|. +...|..........|+.+.+...|++++...|.++..|......+.. .+..+.+...|++
T Consensus 43 A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~~ 117 (144)
T PRK15359 43 AVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 55667778877777 889999999999999999999999999999999999999998875554 4578889999999
Q ss_pred HHHcCCCCHHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSL 99 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi 99 (565)
|+..+|.....|...-
T Consensus 118 Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 118 AIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHhCCCChHHHHHHH
Confidence 9999999988885543
No 196
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.48 E-value=9.8e-05 Score=65.62 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=52.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF 457 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~ 457 (565)
+-..||||.||..++++++|+.+|+.|.....++|... .|. +.|||+|++.+.|..|+. ++|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHHHhhccee
Confidence 44579999999999999999999999976655555331 343 699999999999999997 777654
No 197
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.46 E-value=0.00021 Score=44.28 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~ 228 (565)
+++.||.+|++++..+|.+..+|+.|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 6788999999999999988999999999985
No 198
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.44 E-value=0.0054 Score=67.08 Aligned_cols=114 Identities=13% Similarity=0.024 Sum_probs=92.5
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...++.++.-.|. +..++..|+.-..+.+.++++...++++|...|.+...-..++..+... +..+.+..+|++
T Consensus 105 a~~~l~~~~~~~Pd----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~ 179 (694)
T PRK15179 105 GLAVWRGIHQRFPD----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI-GQSEQADACFER 179 (694)
T ss_pred HHHHHHHHHhhCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cchHHHHHHHHH
Confidence 55667777777776 8888999999888888889999999999999999998888888766543 467789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
++...|.....|..|...|. ..+..+++...|++|+...
T Consensus 180 ~~~~~p~~~~~~~~~a~~l~-~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 180 LSRQHPEFENGYVGWAQSLT-RRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Confidence 99877888889999887444 4688889999999998643
No 199
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.42 E-value=0.00047 Score=66.90 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 391 ECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 391 ~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
++.|.|.||... +|.+.|..+|..||.|..|.|..++. --|.|.+.+...|+-|+. ++|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 689999999766 89999999999999999999988652 479999999999999998 89999999999999986
Q ss_pred CC
Q 008442 469 PK 470 (565)
Q Consensus 469 ~~ 470 (565)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 200
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.31 E-value=0.00076 Score=60.74 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC-CeEEEEe
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL-GKKLSIA 465 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~-g~~l~v~ 465 (565)
...+..+|+.|||..++.+.+..+|.+|+.-..|+++..+ ++.|||+|.+...+..|.. +++..+- ...|.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3567899999999999999999999999999999997654 4899999999988888887 7777765 7778887
Q ss_pred ecC
Q 008442 466 RSN 468 (565)
Q Consensus 466 ~a~ 468 (565)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 654
No 201
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.30 E-value=0.014 Score=64.83 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=108.0
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008442 45 LYERAITD--FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (565)
Q Consensus 45 lyERal~~--~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~ 122 (565)
.|-|+... .|.+.+.|...+... ...+..+.+..+++.++...|....+|..... +..+.+.....-.+ +++..
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~-~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAY-KSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhh--hhhhh
Confidence 45565444 477888999988744 34457888999999999999988777655433 33333333333333 33332
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHH
Q 008442 123 AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSA 202 (565)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~a 202 (565)
.... .++..+...+..-..+. ..-.....++..+.+.+ +.++|
T Consensus 93 ~~~~----------------------------~~~~~ve~~~~~i~~~~--------~~k~Al~~LA~~Ydk~g-~~~ka 135 (906)
T PRK14720 93 FSQN----------------------------LKWAIVEHICDKILLYG--------ENKLALRTLAEAYAKLN-ENKKL 135 (906)
T ss_pred cccc----------------------------cchhHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHcC-ChHHH
Confidence 1110 01111111111001111 11113334566667777 89999
Q ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Q 008442 203 RGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (565)
Q Consensus 203 r~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~f 263 (565)
..+|+++|+..|+++.+-..|+-+.... ++++|..++.+|+...........+...|..+
T Consensus 136 ~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 136 KGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 9999999999999999999999988777 99999999999987544333344444444443
No 202
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.29 E-value=0.00081 Score=54.54 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c--C---CcccCCeEEEE
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K--N---KQMFLGKKLSI 464 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~--~---~~~~~g~~l~v 464 (565)
++.|.|.+++..++.++|+..|+.||.|..|.+... . .-|||-|.+++.|+.|+. + . +..|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----D--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----C--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 367889999999999999999999999999988543 2 389999999999999986 3 3 34566666555
Q ss_pred ee
Q 008442 465 AR 466 (565)
Q Consensus 465 ~~ 466 (565)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 44
No 203
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00061 Score=61.89 Aligned_cols=72 Identities=21% Similarity=0.473 Sum_probs=62.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....+.++|.+++..+.+.+|...|.++|.+....+ .++++||+|...+++..|+. +++..+.|+.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3466799999999999999999999999999844333 35799999999999999998 79999999999993
Q ss_pred e
Q 008442 466 R 466 (565)
Q Consensus 466 ~ 466 (565)
.
T Consensus 167 ~ 167 (216)
T KOG0106|consen 167 K 167 (216)
T ss_pred c
Confidence 3
No 204
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.22 E-value=0.0063 Score=52.10 Aligned_cols=67 Identities=9% Similarity=-0.054 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+....+|...+.+....+ +++.|..+|++++...|+...+|.....+....|+.+.|...|++++.
T Consensus 47 ~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 47 DPYNSRYWLGLAACCQMLK-EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445567777777777777 888999999999888888888888888888888999999999998886
No 205
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.19 E-value=0.0085 Score=46.56 Aligned_cols=96 Identities=18% Similarity=0.109 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~ 104 (565)
.|...+......++.+.+..+|++++...|.+..+|..++..+... ++.+.+...|++++...|....+|......+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3555566666678899999999999999999988888887755543 467789999999999998887777776653333
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 008442 105 SRASEEEISTVFEKSLLC 122 (565)
Q Consensus 105 ~~~~~~~~~~if~ral~~ 122 (565)
.++.+.+...|.+++..
T Consensus 81 -~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 -LGKYEEALEAYEKALEL 97 (100)
T ss_pred -HHhHHHHHHHHHHHHcc
Confidence 46677888888887753
No 206
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.18 E-value=0.12 Score=52.28 Aligned_cols=204 Identities=12% Similarity=-0.088 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHH
Q 008442 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (565)
Q Consensus 54 p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~---~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~ 130 (565)
|....-|...+.+... .+..+.....|.++.+..|.+ .+.+..... +....++.+.+..++++++...+.....+
T Consensus 3 p~~~~a~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~-~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLL-GGERPAAAAKAAAAAQALAARATERERAHVEAL-SAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 4444444444443332 234555578888888877643 233332222 33446889999999999997655433211
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008442 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (565)
Q Consensus 131 ~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (565)
.. -..+.... .... .. .... ..+.......+.....+...+.+....| +++.|...+++++
T Consensus 81 ~~-~~~~~~~~----~~~~------~~----~~~~---~~l~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al 141 (355)
T cd05804 81 KL-HLGAFGLG----DFSG------MR----DHVA---RVLPLWAPENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRAL 141 (355)
T ss_pred HH-hHHHHHhc----cccc------Cc----hhHH---HHHhccCcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 10 00110000 0000 11 1111 2221122223333334445566777778 9999999999999
Q ss_pred HHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 211 ~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~---~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
...|++..++..++......|+++.|..++.+++.. .+. .+. ..|..+..+....|+.+.+...++++
T Consensus 142 ~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 142 ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-WDC-SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCC-CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999889999999999999999999999999863 221 122 23445566777889999888887775
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.0021 Score=47.80 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p 89 (565)
+...|..........++++.+...|++||..+|.++.+|..........++....+...|++|+...|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888888888888888888888888888888888888776544433256778888888887655
No 208
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.15 E-value=0.014 Score=61.64 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC-CCHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP-WVGELWVRSLL 100 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p-~~~~lW~~yi~ 100 (565)
....|..-|.+....|...++..+.-+-+. .|.++.+|....+++.. -..||+|....- .+..- .+|+.
T Consensus 423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d--------~s~yEkawElsn~~sarA-~r~~~ 492 (777)
T KOG1128|consen 423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD--------PSLYEKAWELSNYISARA-QRSLA 492 (777)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC--------hHHHHHHHHHhhhhhHHH-HHhhc
Confidence 445566666655555555555444444444 55666666655554321 124444443211 01110 01110
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 180 (565)
.+-..+.+++++...|++++...+.....|...=.+.+.. .++......|..|.. -.+.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql--------------ek~q~av~aF~rcvt-------L~Pd 551 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL--------------EKEQAAVKAFHRCVT-------LEPD 551 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH--------------hhhHHHHHHHHHHhh-------cCCC
Confidence 0111245677777777777765443222221111111100 123333344444433 2344
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...-|..++..+.+++ ...+|+..+..+++.+-.+..+|..|.-.....|+++.|.+.|.+.+.
T Consensus 552 ~~eaWnNls~ayi~~~-~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLK-KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred chhhhhhhhHHHHHHh-hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5567888888888888 888999999999998877899999999999999999999999999875
No 209
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.14 E-value=0.0005 Score=41.43 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008442 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (565)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~ 68 (565)
.++++.+|||.|... .++..|+.|++|.+
T Consensus 3 ~dRAR~IyeR~v~~h-p~~k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVLVH-PEVKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHhhc
Confidence 467777777777766 34777777777653
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.10 E-value=0.0015 Score=43.77 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~ 65 (565)
..|..+.......|+++++..+|+++|..+|.+.++|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888888889999999999999999999999999988764
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0027 Score=46.55 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC
Q 008442 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (565)
Q Consensus 30 i~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~ 91 (565)
.......|+++.+..+|+++|...|.+.+.|..+...+.. .+..+.+..+|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 4445667888999999999999999999999999886664 447777889999999988865
No 212
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.06 E-value=0.0023 Score=46.93 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=50.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+......+ +++.|..+|+.++..+|++..+|..+..+....|+++.|...|++++.
T Consensus 4 a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566777 999999999999999999999999999999999999999999999987
No 213
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.34 Score=46.74 Aligned_cols=228 Identities=15% Similarity=0.127 Sum_probs=131.1
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH--HHHHH---HHHHHHhcchhhHHHHHHHHHHHcCCCC-HH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD--LWLDY---TQYLDKTLKVGNVVRDVYSRATKNCPWV-GE 93 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~--lW~~Y---~~~l~~~~~~~~~~~~v~erAl~~~p~~-~~ 93 (565)
++.++.-....++-..-|..+++..+.+-.+..--...+ +-..+ =+|+. .+-.+++..+|..-+.. |.. ..
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~--aGl~DRAE~~f~~L~de-~efa~~ 142 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA--AGLLDRAEDIFNQLVDE-GEFAEG 142 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHhcc-hhhhHH
Confidence 346777777777777778888988887766544222221 11111 11211 11234455555444331 111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 94 lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
--...+. +-....+.+++.++-++..+.....+...|. ..||+.. .-....+.+++|+..+.+
T Consensus 143 AlqqLl~-IYQ~treW~KAId~A~~L~k~~~q~~~~eIA--qfyCELA--------------q~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 143 ALQQLLN-IYQATREWEKAIDVAERLVKLGGQTYRVEIA--QFYCELA--------------QQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHH-HHHHhhHHHHHHHHHHHHHHcCCccchhHHH--HHHHHHH--------------HHHhhhhhHHHHHHHHHH
Confidence 1111111 2122334444555544444444333333333 3333322 112333556667777777
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 008442 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~-~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~ 252 (565)
++..++.+.+.-+...+++...| ++..|-+.|+++++.+|... ++-......+...|.++.....+.+++.. + ..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g-~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-~--~g 281 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKG-DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-N--TG 281 (389)
T ss_pred HHhhCccceehhhhhhHHHHhcc-chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-c--CC
Confidence 77767777788888899999999 99999999999999999875 45566666778899999999999999873 2 23
Q ss_pred cHHHHHHHHHHHHHhCCHH
Q 008442 253 SEDICHAWLRFEREYGTLE 271 (565)
Q Consensus 253 ~~~i~~~~~~fE~~~G~~~ 271 (565)
++.+...+--.|...|..+
T Consensus 282 ~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 282 ADAELMLADLIELQEGIDA 300 (389)
T ss_pred ccHHHHHHHHHHHhhChHH
Confidence 4344444444555666444
No 214
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.25 Score=49.48 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=120.9
Q ss_pred hcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 008442 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~ 114 (565)
-+|+.+++...|..||.....+.+....-. ...+..++.+.+++.|-+.-..+-.+.++...-....|. ..+..++.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHHH
Confidence 457788888888888876544444222111 112233456667776666554444455555554443444 334455667
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHH
Q 008442 115 VFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS 194 (565)
Q Consensus 115 if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~ 194 (565)
++-++.+..+.....+..+-..|-. +. |-. .+|+-..+ .+...+...+...+++.++..
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydq--------eg------dks---qafq~~yd----syryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQ--------EG------DKS---QAFQCHYD----SYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhc--------cc------chh---hhhhhhhh----cccccCcchHHHHHHHHHHHh
Confidence 7777766444433333333322210 00 111 22221111 112223333444444444433
Q ss_pred cCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhC--CHHH
Q 008442 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG--TLED 272 (565)
Q Consensus 195 ~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G--~~~~ 272 (565)
.. =.+++..+|+++.-.-|+....-+--+...++.|++++|-.+|+..-. .|+.+ .+.+...+.+.-..| +...
T Consensus 639 tq-f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfped--ldclkflvri~~dlgl~d~ke 714 (840)
T KOG2003|consen 639 TQ-FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPED--LDCLKFLVRIAGDLGLKDAKE 714 (840)
T ss_pred hH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccc--hHHHHHHHHHhccccchhHHH
Confidence 32 356888999999888777554445555677889999999999998855 45543 244555666665555 3334
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 008442 273 FDHSVQKVTPRLEELRLF 290 (565)
Q Consensus 273 ~~~~~~k~~~~~~~~~~~ 290 (565)
+..-++++ .++.+++++
T Consensus 715 y~~klek~-eki~eir~q 731 (840)
T KOG2003|consen 715 YADKLEKA-EKIKEIREQ 731 (840)
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 44455554 445555543
No 215
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.00 E-value=0.034 Score=53.69 Aligned_cols=78 Identities=24% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCCCeEEEc--CCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC--eEEE
Q 008442 389 TDECTAFLS--NINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG--KKLS 463 (565)
Q Consensus 389 ~~~~~l~V~--nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g--~~l~ 463 (565)
..+.-|.++ |--+.+|.+-|..+...+|.|..|.|... +|. -|.|+|++.+.|++|.. |||..|.. -.|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 344555554 44456889999999999999999988774 554 69999999999999998 89998753 3789
Q ss_pred EeecCCCC
Q 008442 464 IARSNPKQ 471 (565)
Q Consensus 464 v~~a~~~~ 471 (565)
|++|+|.+
T Consensus 193 IeyAkP~r 200 (494)
T KOG1456|consen 193 IEYAKPTR 200 (494)
T ss_pred EEecCcce
Confidence 99998864
No 216
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.43 Score=47.86 Aligned_cols=191 Identities=14% Similarity=0.038 Sum_probs=117.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCC
Q 008442 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRAS 108 (565)
Q Consensus 30 i~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~-lW~~yi~~le~~~~~ 108 (565)
+.|..-..++..+...-..||...-.+...-..-..... -+++.+.+.+.|..||.+-..+.+ |+.-=+ ..+. .++
T Consensus 463 l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~-~~~ 539 (840)
T KOG2003|consen 463 LRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEA-LGN 539 (840)
T ss_pred HHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHH-hcC
Confidence 333333345666777777787766556554443322222 234778899999999997654443 332222 2333 577
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 008442 109 EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (565)
Q Consensus 109 ~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (565)
++++.+.|-+.--........++.+...|- +.+.-.+|++++.+.....+....+...+
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye---------------------~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYE---------------------LLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------------------HhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 888888887743322233333333333221 11223345666665555445556788899
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++++.+-| +...|-.++-.....+|.+.+...=.+.|+....-.+++...|++|..
T Consensus 599 ~dlydqeg-dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 599 ADLYDQEG-DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHhhccc-chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999988 999999999888888999877533334445555557888899999843
No 217
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.96 E-value=0.012 Score=49.11 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHH--hhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-c-cchHHHHHHHHHHHHHcCChHHH
Q 008442 161 RETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-S-GAMLEAWQSYISMEIELDHINEA 236 (565)
Q Consensus 161 ~~~~~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~-~~~~~lw~~yi~~e~~~~~~~~a 236 (565)
..++++|+..+. ....+.+.++++|+.|+++- . + .+++|..+... . .....+|..|+.+....|++..|
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~-d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A 118 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D-E---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKA 118 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C-C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 345555555542 23445666788999988652 2 3 67899888876 3 34577999999999999999999
Q ss_pred HHHHHHH
Q 008442 237 RSIYKRC 243 (565)
Q Consensus 237 R~i~~~a 243 (565)
.+||+.+
T Consensus 119 ~~iy~~G 125 (125)
T smart00777 119 DEVYQLG 125 (125)
T ss_pred HHHHHcc
Confidence 9999863
No 218
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.93 E-value=0.0025 Score=62.50 Aligned_cols=64 Identities=28% Similarity=0.378 Sum_probs=53.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec---CCC--CCc--------ceEEEEEecCHHHHHHHHHc
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD---KFT--GKS--------RGLAYVDFIDDEHLAAAVAK 452 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~--g~~--------~g~afv~f~~~~~a~~a~~~ 452 (565)
...+||.+-|||.+-.-+.|.++|+.||.|..|+|... +.+ |.+ +-+|+|+|...+.|.+|.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34689999999999888999999999999999999765 222 222 45899999999999999984
No 219
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.25 Score=49.06 Aligned_cols=251 Identities=10% Similarity=-0.029 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHhc-CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSS-GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~-~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
....|..-..+.-.. ........++-.-....|.++.|-...++.+...+ +...+...|+.+....|..-.---.|..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G-dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG-DYFQAEDIFSSTLCANPDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc-CchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence 445666544443322 22334456677777889999999999988666555 5556889999999888865544445554
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccc---cHHHHH-HHH-----HHHHHHHHHHhh-ccccchhhhhHHH-HH--HHHHHH
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFS---TFEEYL-DLF-----LTRIDGLRRRIL-FSGEVEGVLDYSL-IR--ETFQRA 167 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~---~~~~~~-~~~-----~~~~~~~~r~~~-~~~~~e~~~~~~~-~~--~~~~~a 167 (565)
.| ...+..+.+..+..+.+....- .|-... -+| ..-+.+....+. ..+.++.++--.. ++ .-.++|
T Consensus 275 LL-~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 275 LL-GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HH-HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 33 3357778877777776653211 111000 111 111112211111 1222222111000 11 112333
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHH---HHHHHHcCChHHHHHHHHHHH
Q 008442 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY---ISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 168 ~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~y---i~~e~~~~~~~~aR~i~~~al 244 (565)
+-.+..+...-+.-++.|.-...-+.-.+ .+.+|-..-+.+++.+|.+.....-+ +-|+...+ -++|.++|++++
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~-~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~-rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQK-RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM-REKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh-HHHHHHHHHhhh
Confidence 33333222222222333433333333445 77888888888888877776543333 33433333 578999999998
Q ss_pred hcccCCCCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 245 SKRFTGTGSED--ICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 245 ~~~~~~~~~~~--i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.. ..+.... ........|..+|| +-..+++++
T Consensus 432 ~~--~P~Y~~AV~~~AEL~~~Eg~~~D---~i~LLe~~L 465 (564)
T KOG1174|consen 432 KI--NPIYTPAVNLIAELCQVEGPTKD---IIKLLEKHL 465 (564)
T ss_pred cc--CCccHHHHHHHHHHHHhhCccch---HHHHHHHHH
Confidence 74 2222222 22333444444444 444555554
No 220
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0046 Score=45.75 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
+++.|..+|++++..+|++..+|+.++.+....|+++.|+.++++++..
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999873
No 221
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.88 E-value=0.5 Score=49.68 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=104.1
Q ss_pred HHHhcchhhHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---cc-----cHHHH
Q 008442 67 LDKTLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA---FS-----TFEEY 130 (565)
Q Consensus 67 l~~~~~~~~~~~~v~erAl~~--------~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~---~~-----~~~~~ 130 (565)
.....+..+.+..+|++|++. +|.....-..+.. +-+..+.+.++..+|++|+... +. ....+
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~-~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL-VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 334456778899999999986 3322222122222 3345678899999999999632 11 11122
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008442 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (565)
Q Consensus 131 ~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~ 209 (565)
..+-..|+. . .++..++..++.|..+....+...++ ....+...+.+....+ .++.|..++.++
T Consensus 287 ~nLa~ly~~-------~-------GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-~~Eea~~l~q~a 351 (508)
T KOG1840|consen 287 NNLAVLYYK-------Q-------GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-EYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHhc-------c-------CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-chhHHHHHHHHH
Confidence 222222210 0 14556677778888877664433333 2334444555555555 899999999988
Q ss_pred HHHc--------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 210 LKIS--------GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 210 l~~~--------~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
++.. +.-..+...+..+....|.++.|+++|+.||++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 8762 122457778888888999999999999999986
No 222
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.87 E-value=0.0032 Score=46.59 Aligned_cols=63 Identities=21% Similarity=0.090 Sum_probs=51.6
Q ss_pred hcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 008442 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~y 98 (565)
..|+++.+..+|++++..+|.+.++|..++..+...+ ..+.+..++++++...|..+.+|...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-QYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4678888999999999999999999999988766554 77889999999999988876666543
No 223
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0029 Score=63.70 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=59.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHc
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 452 (565)
....+|||||+||.-++.++|..+|. -||.|..+.|=+|+.-+.++|-|=|+|.+..+-.+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 35578999999999999999999998 699999999999976788999999999999999999963
No 224
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.85 E-value=0.029 Score=56.86 Aligned_cols=94 Identities=19% Similarity=0.045 Sum_probs=77.7
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCH
Q 008442 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (565)
Q Consensus 30 i~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~ 109 (565)
+.-....+++..+..+|++||...|.+..+|..++..+.. .+..+.+...|++|+...|.....|..... +....+.+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~-~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGT-ACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHH-HHHHhCCH
Confidence 3334557899999999999999999999999988876554 457788999999999999999888887765 33447889
Q ss_pred HHHHHHHHHHHhcccc
Q 008442 110 EEISTVFEKSLLCAFS 125 (565)
Q Consensus 110 ~~~~~if~ral~~~~~ 125 (565)
+.+...|++|+...+.
T Consensus 87 ~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 87 QTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999986654
No 225
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.85 E-value=0.85 Score=48.37 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT----LKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~----~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
.......-+++..+.|..+.+..+|...|..+|.+......|...+.-. ....+...++|+.--...|.+.. ..
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~--~~ 114 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA--PR 114 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc--hh
Confidence 3444555566677889999999999999999999999888887765222 12345677888877777776532 22
Q ss_pred HHHHHHHhc-CCHH-HHHHHHHHHHhcc-cccHHHH-------------HHHHHHHHHHHHHHhhcccc----ch--h--
Q 008442 98 SLLSLERSR-ASEE-EISTVFEKSLLCA-FSTFEEY-------------LDLFLTRIDGLRRRILFSGE----VE--G-- 153 (565)
Q Consensus 98 yi~~le~~~-~~~~-~~~~if~ral~~~-~~~~~~~-------------~~~~~~~~~~~~r~~~~~~~----~e--~-- 153 (565)
+|- |.... ..+. .+...+...+..+ ++.+... ..+...+...+......... .+ .
T Consensus 115 rl~-L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 115 RLP-LDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred Hhh-cccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 221 11101 1111 1222222223221 1111111 12222222222111010000 00 0
Q ss_pred -h-----hhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHH
Q 008442 154 -V-----LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (565)
Q Consensus 154 -~-----~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e 227 (565)
+ ...-.....+++|+++++.++...|..+.++..-+++....| ++..|-..++.+-.....+--+=...+.+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 0 000111234578999999999888888999999999999999 999999999999987665555667788888
Q ss_pred HHcCChHHHHHHHHHHHh
Q 008442 228 IELDHINEARSIYKRCYS 245 (565)
Q Consensus 228 ~~~~~~~~aR~i~~~al~ 245 (565)
.+.|.++.|.+++.....
T Consensus 273 LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHCCCHHHHHHHHHhhcC
Confidence 899999999999988854
No 226
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.85 E-value=0.013 Score=50.93 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=58.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc--CCeEEE
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF--LGKKLS 463 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~--~g~~l~ 463 (565)
.-+...+|.|++||++.++++|+.....-|.|+...+.+| |.+.|+|...++..-|+. ++...+ .|-...
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 3456789999999999999999999999999999998876 589999999999999997 655443 354433
Q ss_pred E
Q 008442 464 I 464 (565)
Q Consensus 464 v 464 (565)
+
T Consensus 184 i 184 (241)
T KOG0105|consen 184 I 184 (241)
T ss_pred E
Confidence 3
No 227
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.82 E-value=0.0082 Score=44.52 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYKRCYS 245 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~-~~~~aR~i~~~al~ 245 (565)
..|...+......+ ++++|...|+++|..+|++..+|..........| +++.|.+.|++++.
T Consensus 4 ~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45667777777878 9999999999999999999999999999999999 79999999999986
No 228
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.81 E-value=0.0027 Score=44.25 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV 450 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 450 (565)
+.|-|.|.|++.. +.+...|..||+|..+.+... .-+.||.|.++.+|+.||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5788999997766 455558889999999888522 248999999999999885
No 229
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.80 E-value=0.0049 Score=49.12 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHcCCcccCCeE-E
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIR-ILHDK------FTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKK-L 462 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~-~~~~~------~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~-l 462 (565)
.+.|.|=+.|+. ....|-..|++||.|.+.. +..+. ........-.|.|.++.+|.+||..||..+.|.- +
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467888899988 5577888999999998764 10000 0011224889999999999999999999999874 4
Q ss_pred EEeecC
Q 008442 463 SIARSN 468 (565)
Q Consensus 463 ~v~~a~ 468 (565)
-|.+++
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 466653
No 230
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.73 E-value=0.3 Score=46.24 Aligned_cols=174 Identities=13% Similarity=-0.030 Sum_probs=103.7
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHH---HHHHHHHHHHh-------cch
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKT-------LKV 73 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~l---W~~Y~~~l~~~-------~~~ 73 (565)
+...|+..+...|. ++.....|..........++++.+...|++++...|.++.+ |.......... .+.
T Consensus 52 A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 130 (235)
T TIGR03302 52 AIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTA 130 (235)
T ss_pred HHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHH
Confidence 56677787777764 22234577778888888899999999999999999988863 32222211111 134
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchh
Q 008442 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (565)
Q Consensus 74 ~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~ 153 (565)
.+.+...|++++...|.+...|..+.. +... ........ ...-.++...
T Consensus 131 ~~~A~~~~~~~~~~~p~~~~~~~a~~~-~~~~-------~~~~~~~~-------~~~a~~~~~~---------------- 179 (235)
T TIGR03302 131 AREAFEAFQELIRRYPNSEYAPDAKKR-MDYL-------RNRLAGKE-------LYVARFYLKR---------------- 179 (235)
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHH-HHHH-------HHHHHHHH-------HHHHHHHHHc----------------
Confidence 567899999999999988776655433 1110 00000000 0000011100
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc
Q 008442 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (565)
Q Consensus 154 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~ 215 (565)
.++......|..++..+ .+.+.....+...+..+...+ +.++|..+++.+...+|+
T Consensus 180 -g~~~~A~~~~~~al~~~----p~~~~~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 180 -GAYVAAINRFETVVENY----PDTPATEEALARLVEAYLKLG-LKDLAQDAAAVLGANYPD 235 (235)
T ss_pred -CChHHHHHHHHHHHHHC----CCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 02223333444333322 112334567777888888888 999999999988877663
No 231
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.69 E-value=1.2 Score=47.90 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=57.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHH--HHHHHHhcccCCCCcHHHHHHHHHHHHH
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS--IYKRCYSKRFTGTGSEDICHAWLRFERE 266 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~--i~~~al~~~~~~~~~~~i~~~~~~fE~~ 266 (565)
..+....+ ...+|...|.-++..+|+++..-...+.+....|+...|-+ ++..++.. +.. ....|...-..-+.
T Consensus 691 G~~~~~~~-~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~-n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 691 GLLLEVKG-QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPL-NHEAWYYLGEVFKK 766 (799)
T ss_pred hHHHHHHH-hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCC-CHHHHHHHHHHHHH
Confidence 33444444 66677777777777778777777777777777776554444 77777752 222 33566666666667
Q ss_pred hCCHHHHHHHHHHH
Q 008442 267 YGTLEDFDHSVQKV 280 (565)
Q Consensus 267 ~G~~~~~~~~~~k~ 280 (565)
.|+.+.+.++++.+
T Consensus 767 ~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 767 LGDSKQAAECFQAA 780 (799)
T ss_pred ccchHHHHHHHHHH
Confidence 78777777676654
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.63 E-value=0.0057 Score=40.85 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHH
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~ 225 (565)
..|..++..+...| ++++|+.+|+++++.+|++..+|..+++
T Consensus 2 ~~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35667888888888 8999999999999999998999888764
No 233
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.0047 Score=58.50 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCCCHHH------HHHHhccCCCeeEEEEeecCCCCC-cceEE--EEEecCHHHHHHHHH-cCCcccCC
Q 008442 390 DECTAFLSNINLKATYED------LRRFFSDVGGVSSIRILHDKFTGK-SRGLA--YVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~------l~~~f~~~G~i~~~~~~~~~~~g~-~~g~a--fv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
+..-+||-+||+.+..++ -.++|.+||.|..|.|-....+.. ..+.+ ||+|.+.++|..||. .+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 446789999999887666 246899999999987754321111 12323 999999999999998 79999999
Q ss_pred eEEEEeecC
Q 008442 460 KKLSIARSN 468 (565)
Q Consensus 460 ~~l~v~~a~ 468 (565)
|.|+..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999887754
No 234
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.59 E-value=0.041 Score=42.51 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHh
Q 008442 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (565)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~ 267 (565)
.+..+...+ +++.|..++++++...|....+|..++......++++.|..+|++++.. .+. ...++..+.......
T Consensus 6 ~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 81 (100)
T cd00189 6 LGNLYYKLG-DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPD--NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHh-cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCc--chhHHHHHHHHHHHH
Confidence 344444455 7778888888888877776777777777777778888888888888762 111 223444444444455
Q ss_pred CCHHHHHHHHHH
Q 008442 268 GTLEDFDHSVQK 279 (565)
Q Consensus 268 G~~~~~~~~~~k 279 (565)
|+.+.+...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 555544444433
No 235
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.56 E-value=0.0089 Score=50.63 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=52.4
Q ss_pred CCeEEEcCCCC------CCCH---HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeE
Q 008442 391 ECTAFLSNINL------KATY---EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKK 461 (565)
Q Consensus 391 ~~~l~V~nl~~------~~~~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~ 461 (565)
..||.|.=+.+ ..++ .+|-+.|..||.+.-+|++.+ .-+|+|.+-.+|.+|+.++|..++|+.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEE
Confidence 35777765541 1222 367778899999998888753 579999999999999999999999999
Q ss_pred EEEeecCCC
Q 008442 462 LSIARSNPK 470 (565)
Q Consensus 462 l~v~~a~~~ 470 (565)
|.|....|.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999997665
No 236
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.54 E-value=0.011 Score=56.46 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCCCCCeEEEcCCCC----CCC-------HHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCC
Q 008442 387 GFTDECTAFLSNINL----KAT-------YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNK 454 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~----~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~ 454 (565)
..+..+||.+.|+=. ..+ .++|.+-..+||.|.+|.|.- ..+.|.+-|.|.+.+.|..||. |+|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 346678999999822 223 245556678999999988752 3467999999999999999998 899
Q ss_pred cccCCeEEEEeecCCCC
Q 008442 455 QMFLGKKLSIARSNPKQ 471 (565)
Q Consensus 455 ~~~~g~~l~v~~a~~~~ 471 (565)
..++||.|..+......
T Consensus 337 R~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeecceEEEEEEeCCcc
Confidence 99999999988876543
No 237
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.53 E-value=0.25 Score=52.48 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=103.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSR----ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~----~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~ 158 (565)
++.+.-|.+..-|..|++...... .....+..+|++|+...+.....+..+..++. .+ ..... ..+ .++.
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~--~~-~~~~~-~~~--~~l~ 401 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADI--VR-HSQQP-LDE--KQLA 401 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HH-HhcCC-ccH--HHHH
Confidence 333445677788888887544321 23567889999999877664333333333221 11 11111 000 0122
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHH
Q 008442 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (565)
Q Consensus 159 ~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~ 238 (565)
.+.....++... ...+.....+..++-.....+ +++.|...+++++...++ ...|..+..+....|+.+.|-.
T Consensus 402 ~a~~~~~~a~al-----~~~~~~~~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 402 ALSTELDNIVAL-----PELNVLPRIYEILAVQALVKG-KTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHhhhc-----ccCcCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 222223322221 111112345555555555556 999999999999999985 7788899999999999999999
Q ss_pred HHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 239 i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
.|++|+. +....|...|..=+-| |-|++++.-++-+
T Consensus 475 ~~~~A~~--L~P~~pt~~~~~~~~f---~~~~~~~~~~~~~ 510 (517)
T PRK10153 475 AYSTAFN--LRPGENTLYWIENLVF---QTSVETVVPYLYR 510 (517)
T ss_pred HHHHHHh--cCCCCchHHHHHhccc---cccHHHHHHHHHh
Confidence 9999986 2444454333222223 3456666544433
No 238
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.51 E-value=0.0091 Score=62.11 Aligned_cols=77 Identities=25% Similarity=0.261 Sum_probs=64.8
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 389 TDEC-TAFLSNINLKATYEDLRRFFSDVGGVS-SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 389 ~~~~-~l~V~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
+.++ -|-|.|+|++++-+||-+||..|-.+. +|++... ..|...|-|-|.|++.+.|.+|.. +++..|..+.|.+.
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 4455 566889999999999999999997553 4555554 489999999999999999999998 89999999998875
Q ss_pred e
Q 008442 466 R 466 (565)
Q Consensus 466 ~ 466 (565)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 239
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.47 E-value=0.034 Score=56.32 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
|..|+.++...+...+....+|...+......+ +++.|...+++++...|++...|..........|+++.|...|+++
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555555555444555667777788888888 9999999999999999999999999988888999999999999999
Q ss_pred Hh
Q 008442 244 YS 245 (565)
Q Consensus 244 l~ 245 (565)
+.
T Consensus 97 l~ 98 (356)
T PLN03088 97 AS 98 (356)
T ss_pred HH
Confidence 87
No 240
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.43 E-value=0.0025 Score=58.28 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=58.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC--------CCcce----EEEEEecCHHHHHHHHH-cCCccc
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT--------GKSRG----LAYVDFIDDEHLAAAVA-KNKQMF 457 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~~g----~afv~f~~~~~a~~a~~-~~~~~~ 457 (565)
..-||++++|+.+....|+++|+.||.|-.|.+-....+ |.+.+ -|.|+|.+...|..+.. ||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999887654333 33322 46799999999988777 799999
Q ss_pred CCeE
Q 008442 458 LGKK 461 (565)
Q Consensus 458 ~g~~ 461 (565)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9874
No 241
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.43 E-value=0.017 Score=43.37 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=50.3
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL 94 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~l 94 (565)
...++++.+..++++++...|.++.+|..++..+...+ ..+.+...|++++..+|.....
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG-RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCcHHH
Confidence 45678889999999999999999999999998666544 7788999999999999976543
No 242
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.36 E-value=0.02 Score=42.90 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 191 ~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
+....+ +++.|.+++++++..+|+++.+|..++.+....|+++.|...|++++..
T Consensus 4 ~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344556 9999999999999999999999999999999999999999999999973
No 243
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.34 E-value=0.0023 Score=61.64 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=59.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-C---CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 393 TAFLSNINLKATYEDLRRFFSD-V---GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~-~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
.|-.++||+++++.++..||.+ | |....|-+++.+ .|+..|-|||.|..+++|+.|+..+...|+-|-|.+-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4556799999999999999963 2 355667677655 899999999999999999999988877777776655444
No 244
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.31 E-value=2.2 Score=46.42 Aligned_cols=100 Identities=9% Similarity=0.096 Sum_probs=64.7
Q ss_pred HHHHHHcCCChHHHHHHHHHH------HHH------------------ccchHHHHHHHHHHHHHcCChHHHHHHH----
Q 008442 189 AHLEQSMGKDMVSARGVWERL------LKI------------------SGAMLEAWQSYISMEIELDHINEARSIY---- 240 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~------l~~------------------~~~~~~lw~~yi~~e~~~~~~~~aR~i~---- 240 (565)
+.+++..+....+|-.+|.++ |.. ..+.+.+....++|...+.++++|..++
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555556665777777666532 211 1345789999999999998999888774
Q ss_pred --HHHHhcccCCCC-----------------c-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHHH
Q 008442 241 --KRCYSKRFTGTG-----------------S-----EDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELR 288 (565)
Q Consensus 241 --~~al~~~~~~~~-----------------~-----~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~~~~ 288 (565)
..|++.+...+. + ..|+....+|..+.|+...+.+-+-.+-+++..++
T Consensus 1108 ~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMr 1179 (1416)
T KOG3617|consen 1108 EFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMR 1179 (1416)
T ss_pred HHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHH
Confidence 444442111111 1 14778888888888988877777766666665553
No 245
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.13 Score=49.28 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=78.9
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--hhhHHHHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRA 84 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~--~~~~~~~v~erA 84 (565)
.+|..|.++|. +.+-|......-...++...+...|.+|+...|.++++|..|+.-+..+.+ ....+..+|..|
T Consensus 144 ~Le~~L~~nP~----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 144 RLETHLQQNPG----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHhCCC----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 45666777776 778888888888888888888888888888888888888888876654442 345678888888
Q ss_pred HHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 85 TKNCPWVG-ELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 85 l~~~p~~~-~lW~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
++.-|... .+|.--+..+ ..+++.++...|+..+...+
T Consensus 220 l~~D~~~iral~lLA~~af--e~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 220 LALDPANIRALSLLAFAAF--EQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HhcCCccHHHHHHHHHHHH--HcccHHHHHHHHHHHHhcCC
Confidence 88777543 3443333323 34677777777777776443
No 246
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.23 E-value=0.43 Score=44.65 Aligned_cols=47 Identities=15% Similarity=-0.026 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
+.+.|+.++..+....+....+-...+-.....|++..|+.|-..-+
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 77777777777777766556666666666666777777777665544
No 247
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.22 E-value=0.15 Score=44.20 Aligned_cols=100 Identities=9% Similarity=-0.075 Sum_probs=81.7
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi 99 (565)
++.++.--.|.-.....|+.+.+..+|+-.+...|.+.+.|..... +....++.+.+...|.+|+..-|.++.....-.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~-~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGE-CCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4567766677777788999999999999999999999999999987 444556888899999999998888776654433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008442 100 LSLERSRASEEEISTVFEKSLL 121 (565)
Q Consensus 100 ~~le~~~~~~~~~~~if~ral~ 121 (565)
. .-...++.+.++..|+.|+.
T Consensus 111 ~-c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 E-CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred H-HHHHcCCHHHHHHHHHHHHH
Confidence 3 22336889999999999996
No 248
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.22 E-value=0.23 Score=52.87 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
.-|+++...+...+.-++.....|..+.-....+. +...|-+.|.+++.-.|++.+.|..+....+..+.-.+|+..++
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle-k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE-KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh-hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 45666666666666656666667766555555666 88899999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 242 ~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.|+.. + ..+..+|+-|...-...|..+++-+|.++..
T Consensus 578 EAlKc--n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 578 EALKC--N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhc--C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99963 3 4566789888888888898888887776654
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.021 Score=58.17 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC-Ce
Q 008442 389 TDECTAFLSNINLKATY------EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL-GK 460 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~-g~ 460 (565)
....-|+|.|.|---.. .-|..+|+++|.|....++.+. .|.++||.|++|.+..+|+.|++ +||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44567899999864222 2356789999999999999886 55699999999999999999998 8998875 56
Q ss_pred EEEEee
Q 008442 461 KLSIAR 466 (565)
Q Consensus 461 ~l~v~~ 466 (565)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666643
No 250
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.13 E-value=0.032 Score=53.86 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=68.7
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 387 GFTDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
...+++-+.|-+|... +.-+.|..+|-.||.|..|.+++.+ .|-|.|++.+...+++|+. ||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3467889999999887 5668899999999999999998865 3789999999999999998 8999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
..++..
T Consensus 358 ~~SkQ~ 363 (494)
T KOG1456|consen 358 CVSKQN 363 (494)
T ss_pred eecccc
Confidence 887543
No 251
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=1.2 Score=43.21 Aligned_cols=219 Identities=9% Similarity=0.129 Sum_probs=129.8
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
...|-+.++...++.+|...|+-..+-+ ..+ +....+.+..++.+|...|..+|....+-+.-.+ +....+..+++.
T Consensus 234 lrLgm~r~AekqlqssL~q~~~~dTfll-Lsk-vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR-i~eam~~~~~a~ 310 (478)
T KOG1129|consen 234 LRLGMPRRAEKQLQSSLTQFPHPDTFLL-LSK-VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR-IHEAMEQQEDAL 310 (478)
T ss_pred HHhcChhhhHHHHHHHhhcCCchhHHHH-HHH-HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH-HHHHHHhHHHHH
Confidence 3457788899999999999876554322 222 2333456778999999999999987665555444 222345667888
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHH
Q 008442 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (565)
Q Consensus 114 ~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (565)
++|+++++..+..++....+-..|+ +.+ +-+.+..-|.+.+++ +-...+|+....---.
T Consensus 311 ~lYk~vlk~~~~nvEaiAcia~~yf--------Y~~------~PE~AlryYRRiLqm-------G~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 311 QLYKLVLKLHPINVEAIACIAVGYF--------YDN------NPEMALRYYRRILQM-------GAQSPELFCNIGLCCL 369 (478)
T ss_pred HHHHHHHhcCCccceeeeeeeeccc--------cCC------ChHHHHHHHHHHHHh-------cCCChHHHhhHHHHHH
Confidence 9999988744332221110000000 010 111111112211111 0111222222111111
Q ss_pred HcCCChHHHHHHHHHHHHH--ccc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCH
Q 008442 194 SMGKDMVSARGVWERLLKI--SGA-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~--~~~-~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~ 270 (565)
. +..++-+...|++++.. .+. -.++|..........|++.-|...|.-||.. ......-+.-..-++.+-|++
T Consensus 370 y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 370 Y-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred h-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCch
Confidence 1 22677888899999986 344 3679999888888899999999999999873 233344455566678889999
Q ss_pred HHHHHHHHHH
Q 008442 271 EDFDHSVQKV 280 (565)
Q Consensus 271 ~~~~~~~~k~ 280 (565)
+.++..+..+
T Consensus 446 ~~Arsll~~A 455 (478)
T KOG1129|consen 446 LGARSLLNAA 455 (478)
T ss_pred HHHHHHHHHh
Confidence 9888666544
No 252
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.03 E-value=0.0093 Score=57.62 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCC-eeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGG-VSS--IRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..-|-+++||+..+-++|-.||..|.. |.. |+++.+. .|++.|-|||+|.+.+.|.+|.. .+.+...+|-|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 346788999999999999999998863 444 7888774 89999999999999999999887 466666788888866
Q ss_pred cC
Q 008442 467 SN 468 (565)
Q Consensus 467 a~ 468 (565)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 253
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.98 E-value=0.74 Score=50.89 Aligned_cols=93 Identities=12% Similarity=-0.021 Sum_probs=76.4
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CC
Q 008442 31 KYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR--AS 108 (565)
Q Consensus 31 ~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~--~~ 108 (565)
+-+..+.+++.+.+.-+.+|...|+++..|.....++.....+.+++.+.|-.|.+..|...--|......+++.. .+
T Consensus 10 k~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ 89 (1238)
T KOG1127|consen 10 KDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILD 89 (1238)
T ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhh
Confidence 3445567888899999999999999999999999999888877999999999999999988888887776666632 34
Q ss_pred HHHHHHHHHHHHhcc
Q 008442 109 EEEISTVFEKSLLCA 123 (565)
Q Consensus 109 ~~~~~~if~ral~~~ 123 (565)
.+++-.+|.+++...
T Consensus 90 ld~~~~~yq~~~l~l 104 (1238)
T KOG1127|consen 90 LDRAAKCYQRAVLIL 104 (1238)
T ss_pred hhHhHHHHHHHHHhh
Confidence 567888888887543
No 254
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.97 E-value=0.29 Score=40.30 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC---HHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVR 97 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~---~~lW~~ 97 (565)
+++..-+......|+.+.+...|++++..+|.+ ...+..++..... .++.+.+...|++++...|.. ..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 345566666677899999999999999988766 4566666664443 346778999999999988764 456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 98 SLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
....+. ..+..+.+...|.+++...+.
T Consensus 82 ~~~~~~-~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQ-ELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHH-HhCChHHHHHHHHHHHHHCcC
Confidence 555443 367788899999999876544
No 255
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.86 E-value=0.31 Score=42.36 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHh
Q 008442 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (565)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~ 267 (565)
|+-.....| +++.|..+|+-++...|.+...|+.+.-.....|+++.|...|.+|+.. ..++|...+..=. --...
T Consensus 41 ~A~~ly~~G-~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~-c~L~l 116 (157)
T PRK15363 41 YAMQLMEVK-EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAE-CYLAC 116 (157)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH-HHHHc
Confidence 444455667 9999999999999999999999999999999999999999999999873 4556654443222 22356
Q ss_pred CCHHHHHHHHHHHhhHH
Q 008442 268 GTLEDFDHSVQKVTPRL 284 (565)
Q Consensus 268 G~~~~~~~~~~k~~~~~ 284 (565)
|+.+..+++++.++..-
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 89999998888877555
No 256
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.79 E-value=0.011 Score=57.29 Aligned_cols=76 Identities=18% Similarity=0.349 Sum_probs=62.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
.-|-|.||.+.++.++++.+|...|.|..++|+.... .......|||.|.|...+..|..|...++-|+.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3788999999999999999999999999999875321 123457999999999999999998777777777777654
No 257
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.74 E-value=0.36 Score=39.67 Aligned_cols=88 Identities=16% Similarity=0.078 Sum_probs=48.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC-CcHHHHHHHHHHHH
Q 008442 190 HLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT-GSEDICHAWLRFER 265 (565)
Q Consensus 190 ~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~-~~~~i~~~~~~fE~ 265 (565)
......+ +++.|...|+.++..+|++ ...+..++......|+++.|..+|+.++.. .+.. ....++........
T Consensus 10 ~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 10 LLVLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-YPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-CCCCCcccHHHHHHHHHHH
Confidence 3334445 6777777777777765543 345666666666677777777777777652 1211 11233333333334
Q ss_pred HhCCHHHHHHHHHH
Q 008442 266 EYGTLEDFDHSVQK 279 (565)
Q Consensus 266 ~~G~~~~~~~~~~k 279 (565)
..|+.+.+...+.+
T Consensus 88 ~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 88 ELGDKEKAKATLQQ 101 (119)
T ss_pred HhCChHHHHHHHHH
Confidence 45555554444433
No 258
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.74 E-value=1.4 Score=45.12 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=52.4
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
...+.++.++..+...+...|.|+-+|..-.+.....+ ....+.+-|++|+...|...-||+.|...+-. .+...++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n-k~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN-KAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence 34456666777777777777777777766666555444 33446777777777777777777777764443 33334444
Q ss_pred HHHHHHH
Q 008442 114 TVFEKSL 120 (565)
Q Consensus 114 ~if~ral 120 (565)
.++++.+
T Consensus 395 ~~L~~~~ 401 (484)
T COG4783 395 RILNRYL 401 (484)
T ss_pred HHHHHHh
Confidence 4444444
No 259
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.93 Score=44.27 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCchhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 37 GDPGRVQLLYERAITDFP---VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p---~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
.|+..++.++|-.+...- .+.++|+.|..| +.++.+++..+|+-+...---..+||....- .--..+...++.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~f---hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAc-c~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF---HLGDYEEALNVYTFLMNKDDAPAELGVNLAC-CKFYLGQYIEAK 111 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHH---hhccHHHHHHHHHHHhccCCCCcccchhHHH-HHHHHHHHHHHH
Confidence 355555556555543321 245688888876 4557777888888777643233456644321 000112233444
Q ss_pred HHHHHHHhcccc------------cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchh
Q 008442 114 TVFEKSLLCAFS------------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (565)
Q Consensus 114 ~if~ral~~~~~------------~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 181 (565)
.+-++|-..+.. .-+.+..+.....|.+..+.. ...+.-+|.-|++|++.+...+..++.+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLS-------LAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLS-------LASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 444443332211 111112222222222111111 1123446788899999888887777666
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH-HHHHHHHH
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-EAWQSYIS 225 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~-~lw~~yi~ 225 (565)
..+-.+.+--+.++. -++-+.+++.-.|..+|++. .+=+....
T Consensus 185 ~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 185 IALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred hhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 555444444455555 67778888888888888763 33333333
No 260
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.73 E-value=0.24 Score=50.33 Aligned_cols=100 Identities=16% Similarity=-0.039 Sum_probs=82.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.++..+...|...|. +.-.|..-.+.....+...++.+.|++++...|.+.-+|+.|+.-+...+ .+..+..++.
T Consensus 324 ~A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-~~~eai~~L~ 398 (484)
T COG4783 324 EALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG-KPQEAIRILN 398 (484)
T ss_pred hHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-ChHHHHHHHH
Confidence 356666666677776 77777777777888899999999999999999999999999999877555 5567899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcC
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRA 107 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~ 107 (565)
+.+...|..+..|....+..+....
T Consensus 399 ~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 399 RYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999888776665433
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=95.73 E-value=0.63 Score=47.56 Aligned_cols=164 Identities=12% Similarity=-0.015 Sum_probs=95.8
Q ss_pred HHHcCCCCH---HHH--HHHHHHHHHh----cCCHHHHHHHHHHHH---hcccccHHHHHHHHHHHHHHHHHHhhccccc
Q 008442 84 ATKNCPWVG---ELW--VRSLLSLERS----RASEEEISTVFEKSL---LCAFSTFEEYLDLFLTRIDGLRRRILFSGEV 151 (565)
Q Consensus 84 Al~~~p~~~---~lW--~~yi~~le~~----~~~~~~~~~if~ral---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 151 (565)
+.+.-|.+. .-| ..|++.+... ....+.+..+|.+|+ ...+.....|..+..++ +.+...-...
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h--~~~~~~g~~~-- 315 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH--MSLALHGKSE-- 315 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH--HHHHHhcCCC--
Confidence 444445555 678 6677644331 123566788999999 43333333333322222 2211111111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhh--cCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 152 EGVLDYSLIRETFQRASDYLSEQM--KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 152 e~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
.......|......+. ...|+......-++ ....+ +.+.|...|++++..+|+....|..+.....-
T Consensus 316 --------~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~--~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 316 --------LELAAQKALELLDYVSDITTVDGKILAIMGLI--TGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred --------chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 1112222223332222 23444433333333 33345 68899999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~f 263 (565)
.|+.+.|+..+++|+. .-+..-...+...|++.
T Consensus 385 ~G~~~~a~~~i~~alr-LsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 385 NEKIEEARICIDKSLQ-LEPRRRKAVVIKECVDM 417 (458)
T ss_pred cCCHHHHHHHHHHHhc-cCchhhHHHHHHHHHHH
Confidence 9999999999999986 32333334577777743
No 262
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.13 Score=49.03 Aligned_cols=91 Identities=15% Similarity=0.004 Sum_probs=72.1
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHH
Q 008442 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (565)
Q Consensus 33 e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~ 112 (565)
..+.+++..+...|.+||...|.+.-++..-+.-+. ..+..+.+..-++.||..-|+....|.+--. .-...+.++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~-A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGL-AYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHH-HHHccCcHHHH
Confidence 345678889999999999999999999888776433 4446677999999999998988888877544 33346778888
Q ss_pred HHHHHHHHhcccc
Q 008442 113 STVFEKSLLCAFS 125 (565)
Q Consensus 113 ~~if~ral~~~~~ 125 (565)
..-|++||...+.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 8889999987665
No 263
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.033 Score=56.38 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcce---EEEEEecCHHHHHHHHH
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRG---LAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g---~afv~f~~~~~a~~a~~ 451 (565)
..-.++||||+||++++|+.|...|..||.+. |.++.... --.++| |+|+.|+++.+++.-|.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 34568999999999999999999999999753 55553110 112456 99999999988877664
No 264
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.63 E-value=0.43 Score=42.75 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~y 98 (565)
....+..........|+.+.+...|++++...|... .+|..++... ...+..+.+...|++|+...|.....|..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIY-ASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 445566677777778999999999999998766543 4666665533 344577889999999999999887777665
Q ss_pred HHHH
Q 008442 99 LLSL 102 (565)
Q Consensus 99 i~~l 102 (565)
...+
T Consensus 113 g~~~ 116 (172)
T PRK02603 113 AVIY 116 (172)
T ss_pred HHHH
Confidence 5433
No 265
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.56 E-value=2.5 Score=41.31 Aligned_cols=221 Identities=16% Similarity=0.113 Sum_probs=103.3
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL-WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~l-W~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi 99 (565)
...+.-+...+-....+....+..-|--||..+|+++.. +..-..||- ++..--+..-++|.|..-|.....-+...
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA--mGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA--MGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 345555555554455566666777777777777766653 322223332 11112245566677776664333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccc---cHHHHHHHHHH-----HHHHHHHHhhcccc---ch---hhh-------hHH
Q 008442 100 LSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLT-----RIDGLRRRILFSGE---VE---GVL-------DYS 158 (565)
Q Consensus 100 ~~le~~~~~~~~~~~if~ral~~~~~---~~~~~~~~~~~-----~~~~~~r~~~~~~~---~e---~~~-------~~~ 158 (565)
. +...++.++++..-|...|+..++ .-+.+-.+.+. ....+....-.++. ++ .++ .+-
T Consensus 114 ~-vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 114 V-VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred h-hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 2 222356677777777777765432 11111111100 00011100000010 00 000 000
Q ss_pred HHH-HHH------HHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHH-----
Q 008442 159 LIR-ETF------QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM----- 226 (565)
Q Consensus 159 ~~~-~~~------~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~----- 226 (565)
.+| ..| ..||.-+....+........+-..+++++..+ +.+.+......+|+.+|++-..+-.|-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg-d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG-DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh-hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 111 111 23443333332221222334445678888888 88888888889998888754433333332
Q ss_pred -----H--HHcCChHHHHHHHHHHHh
Q 008442 227 -----E--IELDHINEARSIYKRCYS 245 (565)
Q Consensus 227 -----e--~~~~~~~~aR~i~~~al~ 245 (565)
+ ++.+++..|.+-++..+.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 1 233455666666666664
No 266
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.55 E-value=4.4 Score=43.83 Aligned_cols=241 Identities=15% Similarity=0.144 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC--CCCH-HHHHHHH
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--PWVG-ELWVRSL 99 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~--p~~~-~lW~~yi 99 (565)
..+|..+.-+....|.+..+.+.||+++..+-...+.|..+.--+..... ...+..+.+.++..- |... .+-..+-
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 34566555556666777788888888888877788888888654443332 344667777777655 3222 2222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-cc----cccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH-HHHHHHHHHh
Q 008442 100 LSLERSRASEEEISTVFEKSLL-CA----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET-FQRASDYLSE 173 (565)
Q Consensus 100 ~~le~~~~~~~~~~~if~ral~-~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~-~~~a~~~l~~ 173 (565)
...|+ .+..+++.+.-.+|+. +. .-....|.-+-.+|....+ . . +....|.. ..++++.++.
T Consensus 402 lc~e~-l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--~--a-------~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 402 LCIER-LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--Q--A-------NLKSERDALHKKSLQALEE 469 (799)
T ss_pred HHHhc-hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--c--C-------CChHHHHHHHHHHHHHHHH
Confidence 22222 3344444444455553 10 0011112222222221110 0 0 11112222 2334444444
Q ss_pred hhc--CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 008442 174 QMK--NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250 (565)
Q Consensus 174 ~~~--~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~ 250 (565)
+.. .+|+ ..++|..++.....+++.|..+..+++.- ..++...|.-.+-.....+++..|-.+.+.++.. ++.
T Consensus 470 av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~ 545 (799)
T KOG4162|consen 470 AVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGD 545 (799)
T ss_pred HHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhh
Confidence 332 2333 44455555544444999999999999998 6778999999999999999999999999999973 222
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHH
Q 008442 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (565)
Q Consensus 251 ~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~ 285 (565)
.-.+..-=+.+|..+|+.+. ++..|...+.
T Consensus 546 --N~~l~~~~~~i~~~~~~~e~---~l~t~~~~L~ 575 (799)
T KOG4162|consen 546 --NHVLMDGKIHIELTFNDREE---ALDTCIHKLA 575 (799)
T ss_pred --hhhhchhhhhhhhhcccHHH---HHHHHHHHHH
Confidence 22345555677888777664 4445544444
No 267
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.5 Score=45.32 Aligned_cols=84 Identities=10% Similarity=-0.026 Sum_probs=66.7
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHH
Q 008442 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA--SEEEISTVF 116 (565)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~--~~~~~~~if 116 (565)
.+....-.|..|..+|.+.+=|..........+ +.+.+...|.+|++.-|.+.++|..|...+-...+ ...+++.+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~-~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALG-RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 456677889999999999999999988655444 67779999999999999999999999887765443 345677777
Q ss_pred HHHHhcc
Q 008442 117 EKSLLCA 123 (565)
Q Consensus 117 ~ral~~~ 123 (565)
.+++...
T Consensus 217 ~~al~~D 223 (287)
T COG4235 217 RQALALD 223 (287)
T ss_pred HHHHhcC
Confidence 7777543
No 268
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.43 E-value=2.1 Score=41.81 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHc---cc---hHHHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-GKDMVSARGVWERLLKIS---GA---MLEAWQSYISMEI 228 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~~~~~~ar~i~e~~l~~~---~~---~~~lw~~yi~~e~ 228 (565)
++..+...|++|+.++.. .+.......+....+.++... + +++.|.+.|++++..+ .. ...+.+..+.+..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~-~G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYRE-AGRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHH-CT-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 344555677777776632 222233455667778888777 6 9999999999999873 21 2458889999999
Q ss_pred HcCChHHHHHHHHHHHhcccCCCC-cHHHHHHHHH---HHHHhCCHHHHHHHHHHHh
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTG-SEDICHAWLR---FEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~-~~~i~~~~~~---fE~~~G~~~~~~~~~~k~~ 281 (565)
..|+++.|.++|++........+. ...+-..++. .-...||...++.++++..
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999764322221 1112222222 2334588888887777754
No 269
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.40 E-value=0.089 Score=40.73 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+|...+......+ ++++|..++++ +...+.+..+...++......|+++.|+++|+++
T Consensus 27 ~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 4444677777777 78888888877 5555666666666677777788888888887764
No 270
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.39 E-value=0.33 Score=49.46 Aligned_cols=57 Identities=18% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+++....+ +-.+|-.+++++++.+|.+..+....++|....++++.|..+.++|+.
T Consensus 206 LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 206 LARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred HHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444333 445566666666666666666666666666666666666666666655
No 271
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.34 E-value=2.5 Score=39.70 Aligned_cols=92 Identities=8% Similarity=0.074 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHH
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~ 260 (565)
..++|...+-.+.+.| +.+.||.-|.++++..+....+--...-...-.|+.+.|+.++..+... ......|-+..
T Consensus 133 d~~~~~~lgaaldq~G-r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NL 208 (257)
T COG5010 133 DWEAWNLLGAALDQLG-RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNL 208 (257)
T ss_pred ChhhhhHHHHHHHHcc-ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHH
Confidence 3445555556667888 9999999999999999998888888888888899999999999999752 23334555555
Q ss_pred HHHHHHhCCHHHHHHH
Q 008442 261 LRFEREYGTLEDFDHS 276 (565)
Q Consensus 261 ~~fE~~~G~~~~~~~~ 276 (565)
.-.-...|++...+.+
T Consensus 209 Al~~~~~g~~~~A~~i 224 (257)
T COG5010 209 ALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHhhcCChHHHHhh
Confidence 5555566776666544
No 272
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.29 E-value=0.052 Score=53.20 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCe-EEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGK-KLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~-~l~v~~ 466 (565)
....++-..|+|.++++++++..|..-|...+.... -++.+-+|++.+.+.+.|-.|+. ++.+.+++. .++|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 456789999999999999999999998876554432 34445699999999999999987 788887654 899999
Q ss_pred cCC
Q 008442 467 SNP 469 (565)
Q Consensus 467 a~~ 469 (565)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 764
No 273
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.24 E-value=0.015 Score=56.94 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCc-ccCCeEEEEeecCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQ-MFLGKKLSIARSNP 469 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~-~~~g~~l~v~~a~~ 469 (565)
..+|++||.+.++..+|..+|...---.+-.++. -.||+||.+.+..-+.+|++ ++|+ .+.|.++.|..+-|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997541111111221 13899999999999999998 7765 58999999999877
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
++.
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 654
No 274
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.18 E-value=0.38 Score=48.99 Aligned_cols=85 Identities=14% Similarity=-0.062 Sum_probs=40.5
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
+..+.+..+|++.....|. ++...+..+.... ....+..+..++|...|.+..|+.....++-. .+..+.+..+.
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 4445555555555555442 2222333222222 22335555555555555555555555554433 33445555555
Q ss_pred HHHHhccccc
Q 008442 117 EKSLLCAFST 126 (565)
Q Consensus 117 ~ral~~~~~~ 126 (565)
++|+.+.++.
T Consensus 258 k~av~lsP~~ 267 (395)
T PF09295_consen 258 KKAVELSPSE 267 (395)
T ss_pred HHHHHhCchh
Confidence 5555554443
No 275
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.18 E-value=0.31 Score=46.53 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
..|+.|+..+..++...|...-++..-+..+.+++ .++.|.+-.+.+|...|++...|...-......|+++.|..-|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 44556666555555555555566777788888999 99999999999999999988999888888889999999999999
Q ss_pred HHHh
Q 008442 242 RCYS 245 (565)
Q Consensus 242 ~al~ 245 (565)
+||.
T Consensus 174 KaLe 177 (304)
T KOG0553|consen 174 KALE 177 (304)
T ss_pred hhhc
Confidence 9997
No 276
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.17 E-value=0.055 Score=55.76 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 406 EDLRRFFSDVGGVSSIRILHDKFT---GKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 406 ~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
++++.-+.+||.|.+|.++++-.. .-..|--||+|.+.++++.|++ |.|..+.||.|...+..+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 345555678999999999887212 2335778999999999999998 9999999999998887654
No 277
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.05 E-value=0.34 Score=46.61 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=27.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+.++...+ +++.|...|.++++.+|++ .+.|...+......|+.+.|+.+|++++.
T Consensus 187 G~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 187 GQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 5555555555555554432 33444444444445555555555555544
No 278
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.89 E-value=0.17 Score=38.23 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=39.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
+-.+|+ +|......||.++|++||.|. |.++.|. -|||...+.+.|..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHH
Confidence 455665 999999999999999999764 6676653 79999999999998886
No 279
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.82 E-value=4.4 Score=39.68 Aligned_cols=47 Identities=19% Similarity=0.018 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
|...|......+|+..|-.+.+...-++.+...|++..|..-++.+-
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666665553
No 280
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.75 E-value=1.7 Score=48.23 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHH
Q 008442 55 VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF 134 (565)
Q Consensus 55 ~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~ 134 (565)
.....|..|.... ++...+...|=||++.-+.....|..--.+.... .+...++..|.+|+......+...-..-
T Consensus 459 e~~~~w~a~~~~r----K~~~~al~ali~alrld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDatdaeaaaa~a 533 (1238)
T KOG1127|consen 459 ENSEFWVALGCMR----KNSALALHALIRALRLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAFELDATDAEAAAASA 533 (1238)
T ss_pred HHHHHHHHHHHhh----hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhhhhHHHHH
Confidence 3445666665422 2345577788888887777777775544433222 2555677788888765433222222222
Q ss_pred HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 135 LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL--RLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 135 ~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
.++.+ . .+|+.+..+.-.+ -...+... .-|....-++.+.+ +...+..-|+.++..
T Consensus 534 dtyae---------~-----~~we~a~~I~l~~-------~qka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~ 591 (1238)
T KOG1127|consen 534 DTYAE---------E-----STWEEAFEICLRA-------AQKAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRT 591 (1238)
T ss_pred HHhhc---------c-----ccHHHHHHHHHHH-------hhhchHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcC
Confidence 22210 0 0222222221100 00000000 01111111223334 677788888899988
Q ss_pred ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHH--HHHHhCCHHHHHHHHH
Q 008442 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR--FEREYGTLEDFDHSVQ 278 (565)
Q Consensus 213 ~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~--fE~~~G~~~~~~~~~~ 278 (565)
.|.++..|....+.+-+.|.+..|-++|.+|..- .|...+-.|-. .|...|.....-.++.
T Consensus 592 dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 592 DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999998999999999999998652 24454444432 4555565444333333
No 281
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.60 E-value=1.2 Score=39.66 Aligned_cols=77 Identities=12% Similarity=-0.012 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~y 98 (565)
....|...+......++++.+...|++|+...|.+. .+|...... ....+..+.+...|++|+...|.....|...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~-~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI-HTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 456788888888888999999999999998876543 367666554 3445577889999999999888877766554
Q ss_pred H
Q 008442 99 L 99 (565)
Q Consensus 99 i 99 (565)
.
T Consensus 113 a 113 (168)
T CHL00033 113 A 113 (168)
T ss_pred H
Confidence 3
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.58 E-value=0.046 Score=34.09 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHHHHHHHccchHHHHHHHHHHHHHcCChHHHHH
Q 008442 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (565)
Q Consensus 205 i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~ 238 (565)
+|+++|+.+|+++..|..++.+....|+++.|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999998863
No 283
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.54 E-value=4.5 Score=38.52 Aligned_cols=173 Identities=16% Similarity=0.061 Sum_probs=99.5
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHH-HHHHHHHH
Q 008442 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL-WVRSLLSL 102 (565)
Q Consensus 29 yi~~e~~~~~~~~~~~lyERal~~~p~~~~-----lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~l-W~~yi~~l 102 (565)
-+.-....|+.+.+...|+..+...|.++- +|+.|+-|- .++.+.+...|++.++..|.++.+ |..|+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~---~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK---NADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 333345578999999999999999998753 677777653 456788999999999999977643 44444322
Q ss_pred HHh----------------cCCHH---HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 103 ERS----------------RASEE---EISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 103 e~~----------------~~~~~---~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
-.. ..+.. .+...|++.+..-+.+ .|......++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S--~ya~~A~~rl~~l---------------------- 170 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS--QYTTDATKRLVFL---------------------- 170 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC--hhHHHHHHHHHHH----------------------
Confidence 100 01111 2234444444322211 0111111111111
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH---HHHHHHHHHHHHcCChHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEARSIY 240 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~---~lw~~yi~~e~~~~~~~~aR~i~ 240 (565)
...+. +-...-++++.+.+ .+..|..=++.+++.+|+.. +.-...++-....|..+.|..+.
T Consensus 171 ----~~~la----------~~e~~ia~~Y~~~~-~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 171 ----KDRLA----------KYELSVAEYYTKRG-AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred ----HHHHH----------HHHHHHHHHHHHcC-chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 11110 01113356666666 78888888999998877653 33333344455678888887766
Q ss_pred HHH
Q 008442 241 KRC 243 (565)
Q Consensus 241 ~~a 243 (565)
...
T Consensus 236 ~~l 238 (243)
T PRK10866 236 KII 238 (243)
T ss_pred HHH
Confidence 554
No 284
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.47 E-value=0.091 Score=48.44 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cC-C---cccCCeEEEE
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KN-K---QMFLGKKLSI 464 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~-~---~~~~g~~l~v 464 (565)
....|||.||+.-++-+.+..-|+.||.|....++.|- .+++.|-++|.|...-.+..|+. +. + ....+++..|
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 34789999999999999999999999999988777774 78888999999999998988886 42 2 2345666666
Q ss_pred eecC
Q 008442 465 ARSN 468 (565)
Q Consensus 465 ~~a~ 468 (565)
....
T Consensus 109 eP~e 112 (275)
T KOG0115|consen 109 EPME 112 (275)
T ss_pred Chhh
Confidence 5543
No 285
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.44 E-value=1.9 Score=35.85 Aligned_cols=91 Identities=18% Similarity=0.077 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC---CHHHHHHHHHH
Q 008442 28 IYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW---VGELWVRSLLS 101 (565)
Q Consensus 28 ~yi~~e~~~~~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~---~~~lW~~yi~~ 101 (565)
......-..|.++++..+|++++..-... ...|+.+..-+. +.+..+.+..+++.++...|. +..++..|...
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 33444556799999999999999975444 458888887555 556888899999999999887 77888777765
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008442 102 LERSRASEEEISTVFEKSL 120 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral 120 (565)
+.. .+..+++...+-.++
T Consensus 85 L~~-~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYN-LGRPKEALEWLLEAL 102 (120)
T ss_pred HHH-CCCHHHHHHHHHHHH
Confidence 555 455566656555555
No 286
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.35 E-value=0.22 Score=35.71 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC---CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDV---GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
.+|.|.|+. +++.++|+.+|..| .....|.++-|. -|=|.|.+++.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 479999985 68999999999988 236789998885 58899999999999986
No 287
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.35 E-value=0.29 Score=37.10 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---ccc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SGA----MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~~----~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..++...+.+....+ ++++|...|++++.. .++ ....+..........|+++.|.+.|++++.
T Consensus 5 a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566777888888 999999999999975 332 244667777778899999999999999985
No 288
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.26 E-value=0.06 Score=58.11 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC--eEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG--KKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g--~~l~v 464 (565)
......+||++|+.++....|...|..||.|..|.+- .|. -||||.|.+...+++|+. |.|..|+| +++.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 3567889999999999999999999999999998873 233 499999999999999998 89999875 57899
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
.++.+.
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 888654
No 289
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.07 E-value=1.5 Score=42.97 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHH
Q 008442 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (565)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~ 258 (565)
.....|...|+.+..-. +.+..|.-+|+.+...++..+.+..-.+-.....|+++.|.+++..++.. ...++ +.+.
T Consensus 164 ~~l~qLa~awv~l~~g~-e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~-d~La 239 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGG-EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDP-DTLA 239 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHH-HHHH
T ss_pred HHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCH-HHHH
Confidence 34466777787777543 37889999999988888888888888888889999999999999999873 33334 4444
Q ss_pred HHHHHHHHhCCH-HHHHHHHHH
Q 008442 259 AWLRFEREYGTL-EDFDHSVQK 279 (565)
Q Consensus 259 ~~~~fE~~~G~~-~~~~~~~~k 279 (565)
-.+......|.. +.+.+.+..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHH
Confidence 567777777865 445545543
No 290
>PRK11906 transcriptional regulator; Provisional
Probab=94.01 E-value=2.3 Score=43.59 Aligned_cols=172 Identities=10% Similarity=0.049 Sum_probs=92.9
Q ss_pred HHhcCCCCH---HHH--HHHHHHHHH----hcchhhHHHHHHHHHH---HcCCCCHH-----HHHHHHHHHHH---hcCC
Q 008442 49 AITDFPVSS---DLW--LDYTQYLDK----TLKVGNVVRDVYSRAT---KNCPWVGE-----LWVRSLLSLER---SRAS 108 (565)
Q Consensus 49 al~~~p~~~---~lW--~~Y~~~l~~----~~~~~~~~~~v~erAl---~~~p~~~~-----lW~~yi~~le~---~~~~ 108 (565)
+...-|.+. +-| -.|+.-... .......+..+|.||+ ..-|.... -|+.....+.. ....
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 334446666 777 556554333 1223455778899999 54454332 23332221211 1223
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 008442 109 EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (565)
Q Consensus 109 ~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (565)
..++...-++|+........... ...+.-.+ ..-+..+...++++...++.....|.++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~--~~g~~~~~-------------------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILA--IMGLITGL-------------------SGQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHh-------------------hcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 44566777888876554322111 11111000 0113344444444444456666677777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccchH--HHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAML--EAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~--~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+-+..-.| +.+.|+..+++++...|... .+-..+++.+. ...+++|.++|-+-
T Consensus 379 ~~~~~~~G-~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 379 ALVHFHNE-KIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHcC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 77776677 99999999999999877653 34455554443 33467777776554
No 291
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.83 E-value=1.1 Score=38.79 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008442 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (565)
Q Consensus 73 ~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ra 119 (565)
+.+.+..++++++...|.+..+|...|..+.. .++...+..+|+++
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERY 122 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 34445555555555555555555554442222 34444444444443
No 292
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.81 E-value=7.1 Score=38.10 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc----chH---HHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----AML---EAWQSYISMEI 228 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~----~~~---~lw~~yi~~e~ 228 (565)
+++.+...|++|.+++...- .......+....+.+....+ ++++|.++|+++....- ..+ .+++..+-...
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 66778888999998875433 12223456778899999999 99999999999998631 112 46666666777
Q ss_pred HcCChHHHHHHHHHHHhcc--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 229 ELDHINEARSIYKRCYSKR--FTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~--~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
..||+..|+..|++..... |..+.-..+....++=- +.||.+.+..++..
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAE 259 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 7899999999999997631 22211122333333211 34666666655543
No 293
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.75 E-value=0.018 Score=61.97 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=63.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
....+.|||+|||+..+++.+|+..|..+|.|.+|.|-+.+ -+.---|+||.|.+.+.+-.|.. +.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 44678999999999999999999999999999999986653 34444699999999888877775 77766654445554
Q ss_pred ec
Q 008442 466 RS 467 (565)
Q Consensus 466 ~a 467 (565)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 44
No 294
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.68 E-value=0.37 Score=37.22 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=52.4
Q ss_pred cCCchhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 36 SGDPGRVQLLYERAITDFPV--SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~--~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
+++++.+..+|++++...|. +..+|..++.-+. ..+..+.+..++++ +...|....++..+...+. ..+..+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHH
Confidence 46778899999999999885 3556776555333 44477778888888 5444444344434344333 357788888
Q ss_pred HHHHHH
Q 008442 114 TVFEKS 119 (565)
Q Consensus 114 ~if~ra 119 (565)
.+|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888875
No 295
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.58 E-value=1.1 Score=40.07 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~ 232 (565)
.++..++.+....+ +++.|..+|++++...|.....|..+.......|+
T Consensus 73 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNG-EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 45666777777777 89999999999999888888877777776665554
No 296
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.41 E-value=2.6 Score=36.39 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=25.2
Q ss_pred cCCchhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC
Q 008442 36 SGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p 89 (565)
.++...+...++..+..+|.+. ..++..+.... ..++.+.+..+|+.++...|
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAP 79 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCC
Confidence 4455555555666666555552 22222233222 22345555566666665543
No 297
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.36 E-value=2.3 Score=40.92 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=58.8
Q ss_pred HcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC-CCcHHHHHHHHHHHHHhCC
Q 008442 194 SMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSKRFTG-TGSEDICHAWLRFEREYGT 269 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~-~~~~~i~~~~~~fE~~~G~ 269 (565)
..+ +++.|...|+.+++.+|++ ...+..........|+++.|...|++++.. ++. ....+.+......-...|+
T Consensus 155 ~~~-~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKS-RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcC-CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHHHHHHHcCC
Confidence 345 8999999999999998876 345555556666799999999999999974 332 2222333222222335688
Q ss_pred HHHHHHHHHHHh
Q 008442 270 LEDFDHSVQKVT 281 (565)
Q Consensus 270 ~~~~~~~~~k~~ 281 (565)
.+.+...+++++
T Consensus 233 ~~~A~~~~~~vi 244 (263)
T PRK10803 233 TAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 298
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.30 E-value=2.1 Score=45.59 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=95.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHcCCCCHHHHHHHHH--HHHHhcCC-----HHHHHH
Q 008442 46 YERAITDFPVSSDLWLDYTQYLDKTL----KVGNVVRDVYSRATKNCPWVGELWVRSLL--SLERSRAS-----EEEIST 114 (565)
Q Consensus 46 yERal~~~p~~~~lW~~Y~~~l~~~~----~~~~~~~~v~erAl~~~p~~~~lW~~yi~--~le~~~~~-----~~~~~~ 114 (565)
-+++....|.+.+.|-.|+.-...-. .....++.+|++|+..-|.....|..... ........ ...+..
T Consensus 326 ~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 326 QERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34555667788888888876543211 23456889999999999988766654221 11111111 233444
Q ss_pred HHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHH
Q 008442 115 VFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (565)
Q Consensus 115 if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (565)
...+++..+.. ....+..+-.... .. .+++.....+++|+.. .+ ....|..++++.
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~--------~~------g~~~~A~~~l~rAl~L-------~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQAL--------VK------GKTDEAYQAINKAIDL-------EM-SWLNYVLLGKVY 463 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHH--------hc------CCHHHHHHHHHHHHHc-------CC-CHHHHHHHHHHH
Confidence 45555443211 1111111111000 00 1334444555554443 33 344677788888
Q ss_pred HHcCCChHHHHHHHHHHHHHccchH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 193 QSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~-~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
...| +.++|...|++++...|... -+|..=.-|. -+++...-.+-+++
T Consensus 464 ~~~G-~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~---~~~~~~~~~~~~~~ 512 (517)
T PRK10153 464 ELKG-DNRLAADAYSTAFNLRPGENTLYWIENLVFQ---TSVETVVPYLYRFL 512 (517)
T ss_pred HHcC-CHHHHHHHHHHHHhcCCCCchHHHHHhcccc---ccHHHHHHHHHhcc
Confidence 8888 99999999999999877654 3555444443 34444444444443
No 299
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.97 E-value=5.5 Score=34.33 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHH
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~ 261 (565)
....++.....+ ++++|..+|+.++...++. ...++..+.+....|+++.|..+++... ........+..--
T Consensus 51 ~l~lA~~~~~~g-~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~----~~~~~~~~~~~~G 125 (145)
T PF09976_consen 51 ALQLAKAAYEQG-DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP----DEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc----CcchHHHHHHHHH
Confidence 344566777777 9999999999999986543 3466777777888999999999996642 2233334555555
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 008442 262 RFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 262 ~fE~~~G~~~~~~~~~~k~ 280 (565)
+.-...|+.+.+..+.+++
T Consensus 126 di~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHCCCHHHHHHHHHHh
Confidence 6666778888888777665
No 300
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.90 E-value=4.3 Score=35.99 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
...|...+......+ +++.|...|++++...++. ..+|..........|+++.|..+|++++..
T Consensus 35 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEG-EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555666666667 9999999999999875543 358888888899999999999999999873
No 301
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.86 E-value=0.3 Score=45.82 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCcc-eEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 406 EDLRRFFSDVGGVSSIRILHDKFTGKSR-GLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 406 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~-g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
++++.-..+||.|..|-|...+..-... ---||+|+..++|.+|+. |||..|+||.+...+.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5677778899999998887765222222 246999999999999997 89999999988766643
No 302
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.78 E-value=0.48 Score=49.92 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.+.+=+.+.+++.+..+++++|... .|..+.|..+...+...|-++|.|....+++.|+..|...+-.|.+.|..+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 3567777888999999999999999654 356666666655555579999999999999999998888888888887665
Q ss_pred C
Q 008442 468 N 468 (565)
Q Consensus 468 ~ 468 (565)
.
T Consensus 387 g 387 (944)
T KOG4307|consen 387 G 387 (944)
T ss_pred C
Confidence 3
No 303
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.75 E-value=8 Score=35.62 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHH
Q 008442 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE 93 (565)
Q Consensus 27 ~~yi~~e~~~~~~~~~~~lyERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~ 93 (565)
-.-+.-....|+...+...|+..+..+|.+. .+|+.++.|. .++.+.+...|++-++..|.+..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~---~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK---QGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCcc
Confidence 3344445678999999999999999999875 3777776653 34677899999999999997653
No 304
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.73 E-value=0.052 Score=50.08 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 408 LRRFFS-DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 408 l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
|...|+ +||+|.++.|-.+. .-.-+|-+||.|..+++|++|+. +|+.-+.|++|...++.
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 333334 89999998665442 44567999999999999999998 89999999999877753
No 305
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.69 E-value=0.43 Score=49.31 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=61.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc---CCeE
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF---LGKK 461 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~---~g~~ 461 (565)
+....+.|+|.||-.-+|.-.|+.++. .+|.|.+. ..|+ -+..|||.|.+.+.|.+... |+|... +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445568999999999999999999998 56777665 3332 35689999999999998887 888764 5778
Q ss_pred EEEeecCCC
Q 008442 462 LSIARSNPK 470 (565)
Q Consensus 462 l~v~~a~~~ 470 (565)
|.|.+....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887543
No 306
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.26 E-value=1.7 Score=47.64 Aligned_cols=68 Identities=6% Similarity=0.108 Sum_probs=47.2
Q ss_pred eEEEc-CCCCCCCHHHHHHHhccCCCe-----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 393 TAFLS-NINLKATYEDLRRFFSDVGGV-----SSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 393 ~l~V~-nl~~~~~~~~l~~~f~~~G~i-----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
++||. +=-..++..+|-.++..-+.| -.|+|.. .|.||+... ..+...+. +++..+.|++|.|.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 45553 223458888888888765544 3455543 389999875 44666676 78888999999999
Q ss_pred ecCC
Q 008442 466 RSNP 469 (565)
Q Consensus 466 ~a~~ 469 (565)
.+..
T Consensus 559 ~~~~ 562 (629)
T PRK11634 559 LLGD 562 (629)
T ss_pred ECCC
Confidence 8753
No 307
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.25 E-value=0.34 Score=43.46 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-CCCe---eEEEEeecCC-CC-CcceEEEEEecCHHHHHHHHH-cCCcccCC--
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSD-VGGV---SSIRILHDKF-TG-KSRGLAYVDFIDDEHLAAAVA-KNKQMFLG-- 459 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~-~g-~~~g~afv~f~~~~~a~~a~~-~~~~~~~g-- 459 (565)
.+..+|.|++||++++++++...++. ++.- ..+.-..... .. ..-.-|||.|.+.+++..-.. ++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34679999999999999999997776 5554 3333212211 11 123578999999999887776 78877632
Q ss_pred -e--EEEEeecCC
Q 008442 460 -K--KLSIARSNP 469 (565)
Q Consensus 460 -~--~l~v~~a~~ 469 (565)
. +..|.+|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 456677644
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.01 E-value=0.17 Score=31.46 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHh
Q 008442 45 LYERAITDFPVSSDLWLDYTQYLDKT 70 (565)
Q Consensus 45 lyERal~~~p~~~~lW~~Y~~~l~~~ 70 (565)
+|++||..+|.++..|..|+.++...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 37788888888888888888765543
No 309
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.37 E-value=3.9 Score=40.05 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHI-NEARSIYKRC 243 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~-~~aR~i~~~a 243 (565)
..+....+-.....+ ++++|.++++.++...|.+.+.....|-+....|+. +.+...+...
T Consensus 201 ~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 334444444555555 666666666666666666666666666666666655 4455555444
No 310
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.94 E-value=1.3 Score=45.25 Aligned_cols=67 Identities=12% Similarity=-0.023 Sum_probs=58.6
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHH---HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~---lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+.....|..++..+...+ ++++|...|+++|...|++.+ .|...+-.+..+|+++.|...|++|+.
T Consensus 71 dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445667777887788888 999999999999999999875 499999999999999999999999997
No 311
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.45 E-value=1.2 Score=45.43 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=57.4
Q ss_pred CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcchhhHHHHHHHHHHHc
Q 008442 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (565)
Q Consensus 18 ~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~l---W~~Y~~~l~~~~~~~~~~~~v~erAl~~ 87 (565)
.+|.....|..+.......|+++.+...|++||..+|.+.+. |...+..+. ..+..+.+.+.|++|+..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 356688899999999999999999999999999999999864 766665444 445788899999999995
No 312
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.32 E-value=5.4 Score=34.15 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=53.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHH-HHHHHH
Q 008442 29 YLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL-WVRSLL 100 (565)
Q Consensus 29 yi~~e~~~~~~~~~~~lyERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~l-W~~yi~ 100 (565)
=..-..+.|+...+...||.....+|... .||+.|+-|.. ++.+.+...++|-|+..|.++.+ |..|+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~---~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ---GDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33445667899999999999999999764 69999998753 36678999999999999987654 444444
No 313
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.91 E-value=2.6 Score=36.34 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.....+......+ +++.|..++.+++...|.+..+|...+......|+...|..+|.++..
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445566666777 999999999999999999999999999999999999999999999854
No 314
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.43 E-value=0.2 Score=48.38 Aligned_cols=82 Identities=13% Similarity=0.258 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCCCCCCHHHH-H--HHhccCCCeeEEEEeecCC--CCC-cceEEEEEecCHHHHHHHHH-cCCcccCCeE
Q 008442 389 TDECTAFLSNINLKATYEDL-R--RFFSDVGGVSSIRILHDKF--TGK-SRGLAYVDFIDDEHLAAAVA-KNKQMFLGKK 461 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l-~--~~f~~~G~i~~~~~~~~~~--~g~-~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~ 461 (565)
....-+||-+|+.....+.+ + ..|.+||.|..|.+-.+.. .+. .-.-+||+|...++|..||. .+|..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34567899999988655443 3 4688999999998877651 111 12347999999999999998 7999999998
Q ss_pred EEEeecCCC
Q 008442 462 LSIARSNPK 470 (565)
Q Consensus 462 l~v~~a~~~ 470 (565)
++..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 766665443
No 315
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.23 E-value=4.4 Score=34.67 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=43.4
Q ss_pred hhhHHHHHHHhcCCCCCh-HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH
Q 008442 3 NARAHLEEQISRQDLSDS-EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD 58 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~-~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~ 58 (565)
++.+.||....+.|.... +..++|+.|+-| +.++.+.+...|+|-|..+|.++.
T Consensus 28 ~A~~~le~L~~ryP~g~ya~qAqL~l~yayy--~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 28 EAIKQLEALDTRYPFGEYAEQAQLDLAYAYY--KQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCCC
Confidence 467888888888876532 456678888775 467889999999999999999987
No 316
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=33 Score=36.32 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhcCCchh-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------ccchHHHHHHHHHHHHHcCChHH
Q 008442 164 FQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAWQSYISMEIELDHINE 235 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-------~~~~~~lw~~yi~~e~~~~~~~~ 235 (565)
..+++.++......++.. ..+....+++....| ++..|.+|+...+.. ..+.+.+.-.-+.+....++.+.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g-n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG-NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 455666665555444333 334455678888888 999999999844422 22334444444445566778888
Q ss_pred HHHHHHHHHhccc---CCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 236 ARSIYKRCYSKRF---TGT-GSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 236 aR~i~~~al~~~~---~~~-~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
|-.++..|+.-.- +.. .-..+|.....|+.++|+.++....++...
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 8889988875210 111 112466777889999999887776665544
No 317
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=89.02 E-value=27 Score=35.09 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
+...-.+..++.++.+|+++.+|.....+...++.+.+|...|+.|+..
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5666666777777777777777777777777777777777777777753
No 318
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=12 Score=37.65 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC-ChHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIY 240 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~-~~~~aR~i~ 240 (565)
..|..|+..+...+...++.+.-.-.-.+.....+ +++.||..|+++++..|.+-.+-..++.+-.... ..++.+++|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666543333333333344455566 8888888888888888888888888887765443 445668888
Q ss_pred HHHHhc
Q 008442 241 KRCYSK 246 (565)
Q Consensus 241 ~~al~~ 246 (565)
.+++.+
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888764
No 319
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.82 E-value=1.7 Score=41.63 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=50.2
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE 93 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~ 93 (565)
.+.|+.+++..+||.||...|.++++.+.|..|.+.+. ++-.+-..|-+||...|...+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN-EIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-hhHhhhhhhheeeeeCCCchH
Confidence 35688899999999999999999999999999998774 555577899999998886554
No 320
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.33 E-value=9 Score=31.89 Aligned_cols=60 Identities=13% Similarity=-0.042 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~---~~~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
.++.++.....+| .+++|..+++.++..+|+ ...++..++.-....|..+.|...+-.++
T Consensus 40 a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 40 ALIQLASTLRNLG-RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444455 555555555555555444 33444444444444555555544444443
No 321
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.03 E-value=2.8 Score=35.27 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCeEEEcCCCCCCCH-HHHH---HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 391 ECTAFLSNINLKATY-EDLR---RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~-~~l~---~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
=.||.|.=|..++.. +|++ ..++.||+|.+|.+ .|+ --|.|.|.|..+|-.|+..-+....|..+..++
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsW 158 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGR--QSAVVVFKDITSACKAVSAFQSRAPGTMFQCSW 158 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCC--ceEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence 468999877766543 4444 45688999999876 444 379999999999999997433355566666655
No 322
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.01 E-value=0.33 Score=47.17 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-cccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNK-QMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 467 (565)
...+++|++++...+.+.+...++..+|.+....+........++|++++.|...+.+..|+.+.+ ..+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 456899999999999999999999999988777766655688899999999999999999999765 4566665554443
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.98 E-value=9.6 Score=33.96 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=33.1
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC-------chhHHHHHHHHHhcCCCCHH-HHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-------PGRVQLLYERAITDFPVSSD-LWL 61 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~-------~~~~~~lyERal~~~p~~~~-lW~ 61 (565)
.+|+.+|..+..+|. |.+++-.|-..+...-.... ++.+..-||.||..+|...+ +|.
T Consensus 9 ~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 9 HARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 378888888888885 55555566555554433222 23456677788888887654 444
No 324
>PRK15331 chaperone protein SicA; Provisional
Probab=87.18 E-value=20 Score=31.51 Aligned_cols=88 Identities=9% Similarity=0.015 Sum_probs=67.3
Q ss_pred HcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHH
Q 008442 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~ 273 (565)
..| +++.|..+|.-+....+.+..+|+-++-.....++++.|..+|..|... ..++|...+..- +.-..-|+.+.+
T Consensus 49 ~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~ag-qC~l~l~~~~~A 124 (165)
T PRK15331 49 NQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTG-QCQLLMRKAAKA 124 (165)
T ss_pred HCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHH-HHHHHhCCHHHH
Confidence 556 9999999999999988888999999999999999999999999999763 233443333221 222345888888
Q ss_pred HHHHHHHhhHHH
Q 008442 274 DHSVQKVTPRLE 285 (565)
Q Consensus 274 ~~~~~k~~~~~~ 285 (565)
+.++..++.+.+
T Consensus 125 ~~~f~~a~~~~~ 136 (165)
T PRK15331 125 RQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHhCcc
Confidence 888888776543
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.03 E-value=1.6 Score=26.50 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVS 56 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~ 56 (565)
.|..........|+.+.++..|+++|..+|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666677777777777777766653
No 326
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.42 E-value=0.52 Score=49.54 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
...+|||+|+...+..+-++.+...||.|.++.... |||.+|..+.....|+. +....++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 457999999999999999999999999887754321 99999999999999987 577778888776655
No 327
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.20 E-value=3.5 Score=39.24 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeE-EEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKK-LSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~-l~v~~a~~ 469 (565)
..-|-|-++|+.-. .-|-..|++||.|.+.... .+| .+-+|-|.+..+|++||..||..|+|.. |-|..+.-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45666668887644 5677789999998875433 133 3899999999999999999999999874 55766543
No 328
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.82 E-value=18 Score=30.47 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=64.4
Q ss_pred HcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHH---HHHHhCCH
Q 008442 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR---FEREYGTL 270 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~---fE~~~G~~ 270 (565)
..+ +.+.|.+.|.++|...|.....+..-++-.+..|+.+.|-.-+++|++- ..+....-+++|++ +-+..|+.
T Consensus 55 E~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL--ag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 55 EAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL--AGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred hcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHhCch
Confidence 345 8889999999999988888888888888888889999999999999862 33334456677765 56667888
Q ss_pred HHHHHHHHHH
Q 008442 271 EDFDHSVQKV 280 (565)
Q Consensus 271 ~~~~~~~~k~ 280 (565)
+.++.-+..+
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 8777666554
No 329
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.72 E-value=2.2 Score=38.48 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=43.4
Q ss_pred hcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 008442 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR 106 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~ 106 (565)
++|++..+..-|.+||..||..+.- ..-+-|..+. ..-.-+.-++-||..|...-+||-.|...|++..
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nra--aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRA--AALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhH--HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 4678889999999999999877651 1111121110 0011234566777777777778888888787643
No 330
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.34 E-value=2.8 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 219 AWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 219 lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+|..........|+++.|+..|++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444444445555555555555543
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.86 E-value=12 Score=33.26 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--c-------chhhHHHHHHHHHHHcCCCCH-HHHHH---HHHHHHHhc
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKT--L-------KVGNVVRDVYSRATKNCPWVG-ELWVR---SLLSLERSR 106 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~--~-------~~~~~~~~v~erAl~~~p~~~-~lW~~---yi~~le~~~ 106 (565)
+.++..||.....+|.+.+.+..+.-.|... . +..+.+..-|+.||+.+|..+ .+|+- |.. +-...
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH-
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhhc
Confidence 3577889999999999999888876554332 1 123457788999999999875 46643 222 22223
Q ss_pred CCHHHHHHHHHHHHh
Q 008442 107 ASEEEISTVFEKSLL 121 (565)
Q Consensus 107 ~~~~~~~~if~ral~ 121 (565)
.+..++...|++|..
T Consensus 87 ~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE 101 (186)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 444566666666654
No 332
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=84.62 E-value=5.8 Score=29.72 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC--CcHHHHHHHH---HHHHHhCCHHHHHHHHHHHhhHH
Q 008442 214 GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT--GSEDICHAWL---RFEREYGTLEDFDHSVQKVTPRL 284 (565)
Q Consensus 214 ~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~--~~~~i~~~~~---~fE~~~G~~~~~~~~~~k~~~~~ 284 (565)
|+...++...+......|+++.|...|++++.. .... ....+...+. ..-...|+.+.+...+++++...
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 455667888888889999999999999999864 2211 2223333333 34555677777777777765443
No 333
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.57 E-value=12 Score=30.50 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=46.3
Q ss_pred CeEEEcCCCCC-CCHHHHHHHhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC
Q 008442 392 CTAFLSNINLK-ATYEDLRRFFSDV-GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 392 ~~l~V~nl~~~-~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
+++.|--.|+. ++.++|..+.+.+ ..|..++|+++. ..++-.+.+.|.+.++|..-.. .||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44544444555 5556676555555 457888998874 3466788999999999998887 79988653
No 334
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.54 E-value=38 Score=32.28 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Q 008442 59 LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI 138 (565)
Q Consensus 59 lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~ 138 (565)
--..++.|++......+.+.+++|........+..+|..-...+-.+.++++++....++...........++.+-+.+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r- 152 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHR- 152 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHH-
Confidence 4455666655444334456667777666555555677665444445567788887777662210000011111111111
Q ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhc--CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch
Q 008442 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK--NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (565)
Q Consensus 139 ~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (565)
++-|...+..... +.....+|-..|+.+-.--. .+..|--||+.+-.+++..
T Consensus 153 -------------------------~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T 206 (299)
T KOG3081|consen 153 -------------------------FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPT 206 (299)
T ss_pred -------------------------HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCC
Confidence 1112222222111 11222346666777765444 5778888899888876666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhC
Q 008442 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (565)
Q Consensus 217 ~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G 268 (565)
+.+-.--+-.-...++++.|-.+++.+|.+ ...+|+.+. -.+-.-...|
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~-Nliv~a~~~G 255 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLA-NLIVLALHLG 255 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHH-HHHHHHHHhC
Confidence 776666666777788999999999999875 334454443 3444455556
No 335
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=57 Score=34.21 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+++...+--+..++ .+..|.+-.+.+++.+|+....|+.=...+....+++.|-+.|..++.
T Consensus 391 Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455 555555555555555555555555555555555555555555555554
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.99 E-value=90 Score=36.16 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccc
Q 008442 115 VFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSG 149 (565)
Q Consensus 115 if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (565)
+|..||..-......+..++.+|.+.+++...+.+
T Consensus 923 Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 923 LYDEALALYKPDSEKQKVIYEAYADHLREELMSDE 957 (1265)
T ss_pred cchhhhheeccCHHHHHHHHHHHHHHHHHhccccH
Confidence 34444443333445566677777777766555443
No 337
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=83.94 E-value=9.8 Score=43.35 Aligned_cols=70 Identities=10% Similarity=0.201 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCC
Q 008442 198 DMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~ 269 (565)
....++.+|..+... -.....++..|+.++...+.+.+|.++|..++++. .-....+-.++..|..+.|-
T Consensus 93 ~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~--aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNK--AEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred HHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhh
Confidence 456788888888876 34456678888888888888999999999999853 23356778888889888764
No 338
>PRK15331 chaperone protein SicA; Provisional
Probab=83.18 E-value=25 Score=30.93 Aligned_cols=99 Identities=9% Similarity=-0.085 Sum_probs=69.4
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH--HHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--ELWVR 97 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~--~lW~~ 97 (565)
.+.++.--.|.--.-..|+.+.+..+|.-.+...|.+++.|+..+.- ....+..+.+...|..|...-+.++ -++..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~-~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAV-CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 33444444444445567899999999999999999999999998873 4445577889999999988654433 23222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 008442 98 SLLSLERSRASEEEISTVFEKSLLC 122 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~~ 122 (565)
-.. + ..++.+.++..|+-++..
T Consensus 113 qC~-l--~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQ-L--LMRKAAKARQCFELVNER 134 (165)
T ss_pred HHH-H--HhCCHHHHHHHHHHHHhC
Confidence 111 2 247788899999988874
No 339
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=83.11 E-value=3 Score=43.11 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=53.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c--CCcccCCeEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSD--VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K--NKQMFLGKKL 462 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~--~~~~~~g~~l 462 (565)
....|.|+++-+|..+..++++.+|.. |-.+.+|.+-.+. -=||+|++..+|+.|-+ + .-+.|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345688999999999999999999964 7788888875542 35999999999999976 4 2345777765
Q ss_pred E
Q 008442 463 S 463 (565)
Q Consensus 463 ~ 463 (565)
.
T Consensus 245 m 245 (684)
T KOG2591|consen 245 M 245 (684)
T ss_pred h
Confidence 3
No 340
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.88 E-value=27 Score=29.37 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=64.8
Q ss_pred cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC-CCHHHHHHHHH--HHHHhcCCHHHH
Q 008442 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP-WVGELWVRSLL--SLERSRASEEEI 112 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p-~~~~lW~~yi~--~le~~~~~~~~~ 112 (565)
.|+.+.+.+.|.++|..+|...+.+..-+.-+.-.+ +.+.+++-+++|+..-. ....--..|+. .+-+..++.+.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQG-DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 578899999999999999999999998888665444 66779999999998653 32222222321 244557888999
Q ss_pred HHHHHHHHhcc
Q 008442 113 STVFEKSLLCA 123 (565)
Q Consensus 113 ~~if~ral~~~ 123 (565)
+.-|++|-+.+
T Consensus 135 R~DFe~AA~LG 145 (175)
T KOG4555|consen 135 RADFEAAAQLG 145 (175)
T ss_pred HHhHHHHHHhC
Confidence 99999988644
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.62 E-value=3.8 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcc
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKISG 214 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~ 214 (565)
|...+.++...+ +++.|...|+++++..|
T Consensus 4 ~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLG-DYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence 334444444444 55555555555554433
No 342
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.59 E-value=14 Score=35.15 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+.....+ +++.|-.+|..+++.+|++ .+..+.........|+.+.|+.+|...+.
T Consensus 185 Ge~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 185 GESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44445556 7777888888888775543 56777777777777888888888888776
No 343
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.52 E-value=6.8 Score=29.37 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhccCCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 401 LKATYEDLRRFFSDVGG-----VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 401 ~~~~~~~l~~~f~~~G~-----i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..++..+|-.++...+. |-.|+|.. .|+||+-... .+..++. +++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788889888876643 55677743 2899998764 5777887 7999999999999875
No 344
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=81.77 E-value=8.1 Score=38.12 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~---~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+++..+++.+++..|+ .+.+|+..+.++...|.++++..||+.||.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ 168 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAIL 168 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 566788888888888765 367999999999999999999999999986
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=80.60 E-value=1e+02 Score=34.40 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---------------------cchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------------------GAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---------------------~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
.||..|+++.+..| +++.|..+|..+-..+ ..+.......+..+...|++.+|...|.
T Consensus 913 ~L~~WWgqYlES~G-emdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVG-EMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 68889999888888 9999999998876542 1122356666777778899999998888
Q ss_pred HHHh------cccCCCCcH------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 242 RCYS------KRFTGTGSE------------DICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 242 ~al~------~~~~~~~~~------------~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
||-. .....+-.+ ++..+-.-||+.=|....+-...+|+
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 8722 111222223 33344445666655666555455554
No 346
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=80.56 E-value=13 Score=36.64 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 73 VGNVVRDVYSRATKNCPWV---GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 73 ~~~~~~~v~erAl~~~p~~---~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
..+.++.+++--+.++|.. ...|+..++ |+...++++.|..||+.|+..+-.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Ar-l~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLAR-LEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHcCCC
Confidence 4567888999999999964 468999988 666688899999999999986644
No 347
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.07 E-value=3.5 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCC
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p~ 55 (565)
.|..-.......++.+.+...|++||..+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555666777777777777776664
No 348
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.96 E-value=7.7 Score=34.84 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+...++++.+.| |.+.|.+.|.++...+ .+..++|+..|..-...+++..+...+.++-.
T Consensus 38 ~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555677777777 7777777777777663 23356777777777777777777777777743
No 349
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=79.91 E-value=3.8 Score=26.66 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008442 45 LYERAITDFPVSSDLWLDYTQYLDKTL 71 (565)
Q Consensus 45 lyERal~~~p~~~~lW~~Y~~~l~~~~ 71 (565)
.|.+||...|.+...|+-|++||..++
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~g 30 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHG 30 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcC
Confidence 467788888888888888888887665
No 350
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=79.73 E-value=72 Score=32.17 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHH
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~ 261 (565)
+.+-..|+.-...++ +.+.|.++.+.+++..-+.- -..++.+. ..++...-.+..+..+... +..+.++...-
T Consensus 263 p~l~~~~a~~li~l~-~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l-~~~d~~~l~k~~e~~l~~h---~~~p~L~~tLG 335 (400)
T COG3071 263 PELVVAYAERLIRLG-DHDEAQEIIEDALKRQWDPR--LCRLIPRL-RPGDPEPLIKAAEKWLKQH---PEDPLLLSTLG 335 (400)
T ss_pred hhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccChh--HHHHHhhc-CCCCchHHHHHHHHHHHhC---CCChhHHHHHH
Confidence 456778888888888 99999999999999854433 22222222 3567777888888887632 23347887777
Q ss_pred HHHHHhCCHHHHHHHHHHHhhH
Q 008442 262 RFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 262 ~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
.+-..++.-..++.+++.+++.
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhc
Confidence 7777777777777777776644
No 351
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=79.44 E-value=1.2 Score=44.96 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKA-TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
.+++.+-+.-.|+.. +-.+|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|-...+..|+++.|+|.+-
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 455666666667765 45899999999999999987443 24689999999888777777899999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
+|..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7743
No 352
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.43 E-value=7.1 Score=37.62 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=48.0
Q ss_pred HcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
+.| ..++|..+|+.++...|+++++.+.|..|...++++-.|-.+|-+|+..
T Consensus 128 ~~G-k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDG-KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hcc-chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 345 8899999999999999999999999999999999999999999999863
No 353
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.97 E-value=4.5 Score=24.18 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccch
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAM 216 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (565)
+.+....+ +.++|..+|++++..+|++
T Consensus 7 a~~~~~~g-~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 7 ARCYYKLG-DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHC-HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcc-CHHHHHHHHHHHHHHCcCC
Confidence 33344455 7778888888888777753
No 354
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=67 Score=32.68 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+...|+...+....+++ ....|....+.+++..+......+.-++...-.+.++.|++-|++|++
T Consensus 283 ~~~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLG-RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred cchhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566666777 777777777777777777666666666666667777777777777775
No 355
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.90 E-value=1.9e+02 Score=36.47 Aligned_cols=223 Identities=14% Similarity=0.155 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcC-CCC----------H------HHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVS----------S------DLWLDYTQYLDKTLK-VGNVVRDVYSRAT 85 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~-p~~----------~------~lW~~Y~~~l~~~~~-~~~~~~~v~erAl 85 (565)
.+.++.+++++..|+...+..+.+..|..+ |.. . ..-+.+..|++.... ....+...|..|+
T Consensus 1703 ~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ 1782 (2382)
T KOG0890|consen 1703 EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK 1782 (2382)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 455555666666666666667777777443 220 0 134455566665553 2334778888888
Q ss_pred HcCC-CCH-HHHHH--HHHHHHHhc-------CCHHH---HHHHHHHHHhcccc----cHHHHHHHHHHHHHHHHHHhhc
Q 008442 86 KNCP-WVG-ELWVR--SLLSLERSR-------ASEEE---ISTVFEKSLLCAFS----TFEEYLDLFLTRIDGLRRRILF 147 (565)
Q Consensus 86 ~~~p-~~~-~lW~~--yi~~le~~~-------~~~~~---~~~if~ral~~~~~----~~~~~~~~~~~~~~~~~r~~~~ 147 (565)
...| |.. -+... |-.+++... +++.. +..-|.+|+..+.. .+.-.+.+|+-+. -.....
T Consensus 1783 ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~---t~~~~~ 1859 (2382)
T KOG0890|consen 1783 AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIG---THISSV 1859 (2382)
T ss_pred HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhc---chhccc
Confidence 8777 432 22222 334344322 22222 22233577754322 3444555665421 111111
Q ss_pred cccchh---hhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----ccchHHHH
Q 008442 148 SGEVEG---VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----SGAMLEAW 220 (565)
Q Consensus 148 ~~~~e~---~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----~~~~~~lw 220 (565)
++.... ..+...+....+.+.+++ +.+.++..|.++..+....-+.+-.+...++.. +|. ..+|
T Consensus 1860 ek~~r~ei~s~~~~~in~~i~~~~~~l--------p~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPq-q~lW 1930 (2382)
T KOG0890|consen 1860 EKAPRGEIVSKNLKLINSLIEEALEHL--------PTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQ-QTLW 1930 (2382)
T ss_pred ccCChhhhhhhhHHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCch-HHHH
Confidence 111110 012333334444455544 345577788999888776666766666666654 554 6799
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHhcccCCCCcHHHHHHHH
Q 008442 221 QSYISMEIE-LDHINEARSIYKRCYSKRFTGTGSEDICHAWL 261 (565)
Q Consensus 221 ~~yi~~e~~-~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~ 261 (565)
...+-+-.. .....++.+|+.++... ......+.....
T Consensus 1931 ~~~a~~kS~~p~R~~R~keIL~k~~~~---~~~~~~l~~da~ 1969 (2382)
T KOG0890|consen 1931 QSAALSKSNVPSRVERCKEILTKSRRQ---KPDYKKLLSDAY 1969 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhc---CccHHHHHHHHH
Confidence 888877532 34677888999988763 234445553333
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.30 E-value=54 Score=29.91 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~ 225 (565)
..++.++.-+..++..++.+.+.+...+.++.+.. .++.|..-|.+++...|...++-...+.
T Consensus 148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e-k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELNPTYEKALERRAEAYEKME-KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 33455555555555555655555555566665554 6777777888887777764444333333
No 357
>COG4907 Predicted membrane protein [Function unknown]
Probab=77.91 E-value=3.9 Score=41.27 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 008442 443 DEHLAAAVA 451 (565)
Q Consensus 443 ~~~a~~a~~ 451 (565)
.+.+.+|+.
T Consensus 525 ~dkVvkam~ 533 (595)
T COG4907 525 SDKVVKAMR 533 (595)
T ss_pred HHHHHHHHH
Confidence 356667776
No 358
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=77.57 E-value=4.8 Score=26.18 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.9
Q ss_pred hHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhH
Q 008442 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRV 42 (565)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~ 42 (565)
+..|..+|...|. +-..|+.|++|...+|++.++
T Consensus 2 ~~all~AI~~~P~----ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 2 EEALLRAILAHPD----DDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred cHHHHHHHHhCCC----CcchHHHHHHHHHHcCCHHHH
Confidence 3567888888886 567899999999999998665
No 359
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.38 E-value=6.4 Score=35.47 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=42.5
Q ss_pred CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cC--CcccCCeEEEEeecCCC
Q 008442 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KN--KQMFLGKKLSIARSNPK 470 (565)
Q Consensus 404 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~--~~~~~g~~l~v~~a~~~ 470 (565)
....|+.+|..++.+........ -+=..|.|.+.+.|..|.. ++ +..+.|..++|.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999998877765542 2457899999999999998 68 88999999999887443
No 360
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.08 E-value=7.3 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 218 EAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 218 ~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++|......+...|+++.|.+.|++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788899999999999999999999986
No 361
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=75.57 E-value=1.4e+02 Score=33.45 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~ 90 (565)
..+...+.-+. .|..+.+..++| ++...+-+.++=++.+.++....+..+.+..+|+||+...|.
T Consensus 45 a~vLkaLsl~r--~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 45 AKVLKALSLFR--LGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHH--hcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 34555555533 344445554443 444455557777888877777777788899999999999997
No 362
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=74.57 E-value=6.7 Score=24.47 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 220 WQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 220 w~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
|....++....|++++|.++|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778888899999999999999764
No 363
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.35 E-value=5.3 Score=23.87 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=11.3
Q ss_pred cCCchhHHHHHHHHHhcCCC
Q 008442 36 SGDPGRVQLLYERAITDFPV 55 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~ 55 (565)
.|+.+.+..+|++.+..+|.
T Consensus 13 ~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HCHHHHHHHHHHHHHHHSTT
T ss_pred ccCHHHHHHHHHHHHHHCcC
Confidence 45555555566666655554
No 364
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.48 E-value=12 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=11.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHcc
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISG 214 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~ 214 (565)
+......+ +++.|...|+++|+..|
T Consensus 8 g~~~~~~~-~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 8 GNAYFQLG-DYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHST
T ss_pred HHHHHHhC-CchHHHHHHHHHHHHCc
Confidence 33344444 55555555555555544
No 365
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.31 E-value=5.7 Score=43.25 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008442 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~l 102 (565)
+|.+..+|-.|+..+.+... .+..-+++-+|+..|||..-|...++..+
T Consensus 832 l~~~~~~WR~yl~~lskl~~-~~~~~~~~tkA~~sCpW~K~l~md~ie~l 880 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLN-KERSKAASTKALDSCPWAKWLEMDVIEDL 880 (913)
T ss_pred CCcchhHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCchHHHHHHHHHHhc
Confidence 56677788888887776553 66677788888888888777777776533
No 366
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=72.74 E-value=2.8 Score=45.60 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=63.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcc--cCCeEEEEeecC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM--FLGKKLSIARSN 468 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~--~~g~~l~v~~a~ 468 (565)
.+.++.|.+-..+...|..+|++||.|.+++..++- ..|.|+|...++|-.|+. ++|++ +-|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 355677778888999999999999999999887664 489999999999999997 78887 468899999998
Q ss_pred CCCCC
Q 008442 469 PKQRK 473 (565)
Q Consensus 469 ~~~~~ 473 (565)
+-+.-
T Consensus 373 ~~~~~ 377 (1007)
T KOG4574|consen 373 TLPMY 377 (1007)
T ss_pred ccccc
Confidence 76553
No 367
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.63 E-value=44 Score=33.11 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhcC---CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHH
Q 008442 162 ETFQRASDYLSEQMKN---TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~---~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~ 238 (565)
.-|.-|+.+++..... ......+|+.+..+ .++ |+++|..+|+-+.+......++|...+-...-.|.+..|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 4456666766554432 12345677766544 456 99999999999998755556777666655555777777777
Q ss_pred HHHHH
Q 008442 239 IYKRC 243 (565)
Q Consensus 239 i~~~a 243 (565)
+-.+|
T Consensus 113 ~~~ka 117 (557)
T KOG3785|consen 113 IAEKA 117 (557)
T ss_pred HHhhC
Confidence 77666
No 368
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=53 Score=33.25 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=51.8
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
.+.+.+..+.....++|...|.|+.--..-..-+. ..++.+.++..|++|++.-|.+..+-...+...++.....+.-+
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777764444443332 23356667777777777777777776666653333333334445
Q ss_pred HHHHHHHh
Q 008442 114 TVFEKSLL 121 (565)
Q Consensus 114 ~if~ral~ 121 (565)
.+|.+++.
T Consensus 347 k~y~~mF~ 354 (397)
T KOG0543|consen 347 KMYANMFA 354 (397)
T ss_pred HHHHHHhh
Confidence 66666553
No 369
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.76 E-value=19 Score=32.33 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHH
Q 008442 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEE 286 (565)
Q Consensus 218 ~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~~ 286 (565)
..|...++|..+.|+.+.|.+.|.++..........-+++..+++.--.+|+...+...+.++..-++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 467788889999999999999999988753333334456677777777889999999888888766654
No 370
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=70.47 E-value=1.1e+02 Score=35.43 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhc---CC--chhHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc--C
Q 008442 22 KFQQYMIYLKYEQSS---GD--PGRVQLLYERAITDF------PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--C 88 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~---~~--~~~~~~lyERal~~~------p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~--~ 88 (565)
-+..|..|+.|.... |. ......+.|||+... ..++.+-+.|+-+. .......++++|...... +
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~--~~e~~~d~~d~f~~m~~kgIg 110 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLE--LREELQDAEDFFSYLENKGIG 110 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHH--HHHHHhhHHHHHHHHHhcccc
Confidence 357899999998653 33 345677888887754 34444222222111 111234467777777763 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 89 p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+....++..|...+|+. ..+.++..+|+.+++..
T Consensus 111 ~~lalfYe~~a~~lE~k-~~~keA~~v~q~Giq~~ 144 (974)
T KOG1166|consen 111 TTLALFYEAYAKHLERK-EYFKEAKEVFQLGIQNK 144 (974)
T ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 44456777777766663 44889999999998643
No 371
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=69.73 E-value=95 Score=28.80 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~ 90 (565)
.-++.=|.++|...|.-+++..-..-|+.... +.+.+.++|+-.+..-|.
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-cchHHHHHhhhHhccCCc
Confidence 44555677777777777777665555554333 566666777666665554
No 372
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=69.26 E-value=9.7 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 008442 26 YMIYLKYEQSSGDPGRVQLLYERAIT 51 (565)
Q Consensus 26 W~~yi~~e~~~~~~~~~~~lyERal~ 51 (565)
|....+.....|+.+++..+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666777778888888888888653
No 373
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=68.82 E-value=0.78 Score=45.00 Aligned_cols=65 Identities=12% Similarity=0.022 Sum_probs=54.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCe
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGK 460 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~ 460 (565)
+|++|++|+..+...++-+.|..+|+|...++- .|...-+|-|+|....+...|+.++|..+.-+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~gre~k~q 216 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHGRERKRQ 216 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcchhhhhh
Confidence 789999999999999999999999999887773 34445678899999989999998888776533
No 374
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.54 E-value=30 Score=25.27 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=40.9
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 402 KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 402 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
.++-++++..+..|+ ... |..|+ + | =||.|.+..+|+++.. .++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999996 333 33454 3 2 3899999999999998 5888887777654
No 375
>PRK04841 transcriptional regulator MalT; Provisional
Probab=65.74 E-value=2.6e+02 Score=32.32 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCC----HHHHHHH-HHHHHHhcchhhHHHHHHHHHHHcCCCC-----H-HHH-HHHHH
Q 008442 33 EQSSGDPGRVQLLYERAITDFPVS----SDLWLDY-TQYLDKTLKVGNVVRDVYSRATKNCPWV-----G-ELW-VRSLL 100 (565)
Q Consensus 33 e~~~~~~~~~~~lyERal~~~p~~----~~lW~~Y-~~~l~~~~~~~~~~~~v~erAl~~~p~~-----~-~lW-~~yi~ 100 (565)
....|+++.+..+|++++...... ...|... +..+....++.+.+...+++++..+... . ..+ ...+-
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 345677777777888777643221 1122111 1112223346666777777777643210 0 111 11111
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008442 101 SLERSRASEEEISTVFEKSLL 121 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~ 121 (565)
.+....++.+++...+.+++.
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHH
Confidence 122334677777777777765
No 376
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=62.89 E-value=9.7 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=24.7
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS 36 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~ 36 (565)
...|..||..|.+-.. ...-|+.||.||...
T Consensus 26 vkkR~~fEy~L~rr~~----~~~Dfl~YI~yE~~L 56 (83)
T PF08640_consen 26 VKKRRDFEYKLQRRGK----KKSDFLRYIEYEMNL 56 (83)
T ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHH
Confidence 4678999999988765 567899999998753
No 377
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.55 E-value=29 Score=35.26 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=54.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDV-GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
....|+|-.+|..++-.||-.|...+ -.|.+|++++|. . .++=...|.|.+.++|..--. .||..+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-M-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-C-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999999999999999988765 468999999964 2 223456899999999998887 89988753
No 378
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=61.22 E-value=1.3e+02 Score=30.77 Aligned_cols=87 Identities=13% Similarity=-0.014 Sum_probs=52.8
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHhcchhhHHHHHHHHHHHcCCCCH----HHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDY------------TQYLDKTLKVGNVVRDVYSRATKNCPWVG----ELWVRSLL 100 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y------------~~~l~~~~~~~~~~~~v~erAl~~~p~~~----~lW~~yi~ 100 (565)
++.+.+...|+++|...|...+.=..| ..-..+++ ....+.++|--||..-|.+. .|+.....
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G-~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG-NYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc-chhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 355677888999999988877644433 22222222 34457889999998877643 33333332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
.-...+...++...-+.|+.....
T Consensus 296 -v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 296 -VNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred -hhcccCCchhhhhhhhhhhhcCHH
Confidence 222345666677777777765544
No 379
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=60.81 E-value=1.5e+02 Score=28.07 Aligned_cols=56 Identities=11% Similarity=-0.001 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 157 YSLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
.+....+|+.|.+.....+...+| .+.|.+.|+-|+....++.++|..+-..++..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667788888776554544333 45666777777666655777777665555543
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.78 E-value=4.5e+02 Score=33.44 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=70.4
Q ss_pred ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC-CC-------
Q 008442 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PW------- 90 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~-p~------- 90 (565)
+....+.|+.++....+.|..++|+...=.|...- -+.+-++.+++++..+ +...+..+++..+..| |.
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCccc
Confidence 33456899999999999999998887776666553 6788999999999766 5566888888888544 42
Q ss_pred ---C--HHHHH----HHHHHHHHh-cCCHHHHHHHHHHHHhccc
Q 008442 91 ---V--GELWV----RSLLSLERS-RASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 91 ---~--~~lW~----~yi~~le~~-~~~~~~~~~if~ral~~~~ 124 (565)
+ ..+.- .+-.+++.. +.....+...|+.++.+.+
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1 11221 112233332 2334578889999987654
No 381
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.56 E-value=1.5e+02 Score=28.01 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHH------HHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISME------IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLE 271 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e------~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~ 271 (565)
++++|...+.++++.+.++-.+|-..=.+| .....+..+..+|++|+. +=.++|+++
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~-----------------lY~E~Gspd 108 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE-----------------LYVECGSPD 108 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------HHHHhCCcc
Confidence 677777777777766554444444333332 233344445555555532 223567777
Q ss_pred HHHHHHHHHhhHHHHHH
Q 008442 272 DFDHSVQKVTPRLEELR 288 (565)
Q Consensus 272 ~~~~~~~k~~~~~~~~~ 288 (565)
++.-++.|+.+.++.+.
T Consensus 109 tAAmaleKAak~lenv~ 125 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVK 125 (308)
T ss_pred hHHHHHHHHHHHhhcCC
Confidence 77777777766665543
No 382
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.33 E-value=1.9e+02 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHc------CCChHHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 008442 183 RLYAYWAHLEQSM------GKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (565)
Q Consensus 183 ~l~~~~a~~e~~~------~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~ 228 (565)
+++..++++-... . +.+.+...|..+++.+|.....|..|+.+..
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSE-SSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 4445555555554 4 6777888888888888888888888887753
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.50 E-value=20 Score=20.09 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCC
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFP 54 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~~p 54 (565)
.|..........++.+.+...|++++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444444555566666666666666554
No 384
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=56.96 E-value=19 Score=37.61 Aligned_cols=80 Identities=19% Similarity=0.115 Sum_probs=52.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcc---cCCe-EEEE
Q 008442 391 ECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM---FLGK-KLSI 464 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~---~~g~-~l~v 464 (565)
.+++.|.|+|...|...|...-. ..|.-..+.++.|=.+....|||||.|.+++.+..+.+ .+|+. +.+. .+.+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 34555566655544444333322 24555667777776566678999999999999998887 68875 4443 4567
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
.+|+-.
T Consensus 468 tYArIQ 473 (549)
T KOG4660|consen 468 TYARIQ 473 (549)
T ss_pred ehhhhh
Confidence 777544
No 385
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=2.6e+02 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++..|..-|.++|+..|++..++..-+-....++++..|.+--+.+++
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 788888888888888888888887777778888888888887777776
No 386
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=56.03 E-value=2.7e+02 Score=29.41 Aligned_cols=85 Identities=21% Similarity=0.120 Sum_probs=55.4
Q ss_pred cCCchhHHHHHHHHHhcCCCCHH----HHHHHHHHHH---H---hcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 008442 36 SGDPGRVQLLYERAITDFPVSSD----LWLDYTQYLD---K---TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~~----lW~~Y~~~l~---~---~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~ 105 (565)
.||.+....++.+|....-.... +-+.|=.++. . ...+.+.+.++++......|.+ .||.-+--.+++.
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-ALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 46777777888888764221111 1122211111 1 1224456888999999999964 6777766667777
Q ss_pred cCCHHHHHHHHHHHHh
Q 008442 106 RASEEEISTVFEKSLL 121 (565)
Q Consensus 106 ~~~~~~~~~if~ral~ 121 (565)
.++++.+...|++|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 280 KGNLEEAIESFERAIE 295 (468)
T ss_pred hcCHHHHHHHHHHhcc
Confidence 8999999999999885
No 387
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.02 E-value=2e+02 Score=27.91 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+++.+...+ +.+.+.+.+++.+...|-.-.+|...+..+...|+...|...|++.-.
T Consensus 158 ~lae~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 158 KLAEALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444444555 788888999999999999899999999999999999999999888743
No 388
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.01 E-value=1.9e+02 Score=27.68 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHHccch-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHH
Q 008442 197 KDMVSARGVWERLLKISGAM-----LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLE 271 (565)
Q Consensus 197 ~~~~~ar~i~e~~l~~~~~~-----~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~ 271 (565)
+++..|...|...++.+|++ ..+|+-=..| ..|+++.|-.+|.+++...-.++...+-+.....-....|+.+
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y--~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY--AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH--hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 38999999999999997764 4588654444 5899999999999998743222333333333444555667777
Q ss_pred HHHHHHHHHhh
Q 008442 272 DFDHSVQKVTP 282 (565)
Q Consensus 272 ~~~~~~~k~~~ 282 (565)
.+...++.++.
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 77766665543
No 389
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=55.65 E-value=1.7e+02 Score=26.80 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=31.0
Q ss_pred HcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 194 SMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 194 ~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..| +...|...|+.++..+|.+ ...++..+.-....|+++.|...|++.+.
T Consensus 17 ~~g-~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 17 QQG-DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445 7888888888888776543 22333333333357788888888888876
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.89 E-value=1.1e+02 Score=28.78 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
-|..|+..+...+..++....+|..-|--..+.. +.+.+..-..++++..|+.+.-......+......++.|...+.+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3444555555555545554455554444444444 777777777888888888877666666666677889999999999
Q ss_pred HHh--cccCCCCcHHHHHHHH
Q 008442 243 CYS--KRFTGTGSEDICHAWL 261 (565)
Q Consensus 243 al~--~~~~~~~~~~i~~~~~ 261 (565)
|.+ +..+.+.-.+||.+..
T Consensus 104 a~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHH
Confidence 943 2222222335655443
No 391
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=54.07 E-value=2.6e+02 Score=29.46 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=43.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~--~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+.-..++| ..++|.+.|..+++.+|. ...+-...++.....+.+..+..++.+-
T Consensus 266 AmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33345677 888999999999987654 4667788888888899999999998886
No 392
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=53.51 E-value=27 Score=25.62 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=42.5
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 406 EDLRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 406 ~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
.+|.+-|...| .+..++-+..+.++.+-..-||+.....+... .++=+.|+|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCc
Confidence 46778888888 68888888877666666778888875432222 234456889998887754
No 393
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=53.33 E-value=1.8e+02 Score=26.44 Aligned_cols=119 Identities=14% Similarity=0.191 Sum_probs=75.0
Q ss_pred cCCHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 008442 106 RASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (565)
Q Consensus 106 ~~~~~~~~~if~ral~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l 184 (565)
.++.-+++..|++++.-++. .....+.+..+.+..- ++......+++..++- ......|+
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~--------------~~A~a~~tLe~l~e~~-pa~r~pd~---- 162 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ--------------EFAAAQQTLEDLMEYN-PAFRSPDG---- 162 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc--------------cHHHHHHHHHHHhhcC-CccCCCCc----
Confidence 46778899999999987664 4444555444433111 2223333333322221 11112232
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHH----HHHHHHHHHh
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE----ARSIYKRCYS 245 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~----aR~i~~~al~ 245 (565)
.+.|++.+...| ....|+.-|+-++...|. .+--+.|..|...+|.... ++++++.+..
T Consensus 163 ~Ll~aR~laa~g-~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 163 HLLFARTLAAQG-KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred hHHHHHHHHhcC-CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 446788887878 888899999999998877 6777889999988886554 4456666643
No 394
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.13 E-value=3.2e+02 Score=29.38 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHH--HHHHHHHHHHHHHHHhhccccch
Q 008442 76 VVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVE 152 (565)
Q Consensus 76 ~~~~v~erAl~~~p~~~~-lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~e 152 (565)
.+..++.......|.... +-..-+ .+....++.+.+..++...+..-.+.... +..-.-.++..+.-++.
T Consensus 359 ka~e~L~~~~~~~p~~s~~v~L~~a-Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~------ 431 (652)
T KOG2376|consen 359 KAIELLLQFADGHPEKSKVVLLLRA-QLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK------ 431 (652)
T ss_pred hhHHHHHHHhccCCchhHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc------
Confidence 355666666666665422 222222 35556788888877777433110000000 00000011111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 008442 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (565)
Q Consensus 153 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~ 232 (565)
+..-...++.+|+.++............+|-..+.|+.+.| +.+.|..+++.+++.+|...++-...+--+... +
T Consensus 432 ---~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G-~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d 506 (652)
T KOG2376|consen 432 ---DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG-NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-D 506 (652)
T ss_pred ---CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC-chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-C
Confidence 11224467778888776655444444556777888998887 888999999999998777766554444433222 3
Q ss_pred hHHHHHHH
Q 008442 233 INEARSIY 240 (565)
Q Consensus 233 ~~~aR~i~ 240 (565)
++.|-.+-
T Consensus 507 ~eka~~l~ 514 (652)
T KOG2376|consen 507 PEKAESLS 514 (652)
T ss_pred HHHHHHHh
Confidence 55554443
No 395
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=53.03 E-value=17 Score=35.37 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCCCHH
Q 008442 44 LLYERAITDFPVSSD 58 (565)
Q Consensus 44 ~lyERal~~~p~~~~ 58 (565)
..+-|||..-..+++
T Consensus 25 ~~lsral~ag~~spd 39 (465)
T KOG3973|consen 25 ENLSRALMAGGISPD 39 (465)
T ss_pred hhHHHHHHcCCCChh
Confidence 446677777666665
No 396
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.23 E-value=4.7 Score=42.78 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 008442 22 KFQQYMIYLK 31 (565)
Q Consensus 22 ~~~~W~~yi~ 31 (565)
+.+.|...|+
T Consensus 21 ~~~~y~~il~ 30 (556)
T PF05918_consen 21 HEEDYKEILD 30 (556)
T ss_dssp GHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444444444
No 397
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=2.9e+02 Score=28.30 Aligned_cols=83 Identities=23% Similarity=0.176 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 008442 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS---EEEISTVFEK 118 (565)
Q Consensus 43 ~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~-~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~---~~~~~~if~r 118 (565)
..+.+-||..+|.++..|..-.-.|.+..-. ...-+.+++++++.-|.+..-|.-.-...+....+ ..+=.+.-.+
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~ 174 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTK 174 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHH
Confidence 4567899999999999999887766655533 55677899999998888877774322212322222 2223344566
Q ss_pred HHhcccc
Q 008442 119 SLLCAFS 125 (565)
Q Consensus 119 al~~~~~ 125 (565)
++...|+
T Consensus 175 ~I~~nfS 181 (421)
T KOG0529|consen 175 LINDNFS 181 (421)
T ss_pred HHhccch
Confidence 6655555
No 398
>COG4499 Predicted membrane protein [Function unknown]
Probab=50.81 E-value=2.3e+02 Score=28.56 Aligned_cols=112 Identities=11% Similarity=0.141 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhc-CCchhHHHH--HHHHHHHHHcCCChHHHHHHHHHHHH-HccchHHHHHHHHHHHHHcCChHHHH
Q 008442 162 ETFQRASDYLSEQMK-NTDGLLRLY--AYWAHLEQSMGKDMVSARGVWERLLK-ISGAMLEAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~-~~~~~~~l~--~~~a~~e~~~~~~~~~ar~i~e~~l~-~~~~~~~lw~~yi~~e~~~~~~~~aR 237 (565)
..|.+.+.-+..+-. ..|...+.. ..|+.+| .++ ..+-..|.+.+.- ..++...+|+.+ .+|+++.|.
T Consensus 262 ~nY~qVittLe~ydp~klPksv~Y~LA~SYV~~e-~L~--~~kkeNi~NnislkSd~~~llYWi~~-----GRGe~~eAi 333 (434)
T COG4499 262 NNYDQVITTLENYDPEKLPKSVQYILAVSYVNLE-DLT--TTKKENILNNISLKSDDNYLLYWIYS-----GRGEFKEAI 333 (434)
T ss_pred ccHHHHhhhcccCChhhCcHHHHHHHHHHHhhcc-ccc--hHHHHHHhhccccccchhHHHHHHHh-----cCccHHHHh
Confidence 445555555544332 234443333 3344443 111 2233345554442 356667788765 467777776
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHH-HHH--hCCH--HHHHHHHHHHhhHHHHHH
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRF-ERE--YGTL--EDFDHSVQKVTPRLEELR 288 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~f-E~~--~G~~--~~~~~~~~k~~~~~~~~~ 288 (565)
.|-.. .+++.-+.-++... |+. .+++ +...+.+...+..+++..
T Consensus 334 nIAr~-------L~D~d~~~~Al~k~~eevksn~~lsg~~r~e~lk~~n~~lqd~~ 382 (434)
T COG4499 334 NIARN-------LDDNDLTLLALTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYT 382 (434)
T ss_pred hHHHh-------CCcchhHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHH
Confidence 55332 23454455555543 332 2433 334445666666666654
No 399
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.39 E-value=30 Score=34.49 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=47.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHc
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAK 452 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 452 (565)
.+-|=|-++|.....+||-..|..||. -.+|.+|-|. .+|..|.+...|..||.+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 467889999999999999999999964 5678888775 899999999999999987
No 400
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.34 E-value=1.1e+02 Score=28.86 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHhcCCHHHHHHHHHH
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL-SLERSRASEEEISTVFEK 118 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~-~le~~~~~~~~~~~if~r 118 (565)
..+...|-|||..+|+....|..-+.-.. ..+..+.+..-..||+...|+...- .|+. ........++.+..++.+
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~--h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKA--HYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHH--HHHHHHHHHhhccccHHHHHHHH
Confidence 45667999999999999999987653222 2456778889999999998875432 2221 111224556778888888
Q ss_pred HHh
Q 008442 119 SLL 121 (565)
Q Consensus 119 al~ 121 (565)
|..
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 853
No 401
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.67 E-value=62 Score=34.15 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccC----CCeeEEEEeecC----------CCCC-------------c------
Q 008442 387 GFTDECTAFLSNINLK-ATYEDLRRFFSDV----GGVSSIRILHDK----------FTGK-------------S------ 432 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~----G~i~~~~~~~~~----------~~g~-------------~------ 432 (565)
.....++|-|.|+.++ +...+|.-+|..| |.|.+|.|.... ..|. +
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3456789999999998 7889999998765 578888875431 1122 0
Q ss_pred ---------c---------eEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 433 ---------R---------GLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 433 ---------~---------g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
| =||.|+|.+...|.+.-. ++|..+...-..+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1 278999999999988887 8999886543333
No 402
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.42 E-value=2.8e+02 Score=27.52 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHccch--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008442 201 SARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (565)
Q Consensus 201 ~ar~i~e~~l~~~~~~--~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (565)
+.-+..+++-+..+.. .+.|+.-++|+.+.|+.++|-+.+.+...+.......-+|...-+++=--|+|-.-+.+.++
T Consensus 86 eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ie 165 (393)
T KOG0687|consen 86 ELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIE 165 (393)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 3334445555554433 57999999999999999888777777666544455566777777777777888776666666
Q ss_pred HHhhH
Q 008442 279 KVTPR 283 (565)
Q Consensus 279 k~~~~ 283 (565)
++..-
T Consensus 166 kak~l 170 (393)
T KOG0687|consen 166 KAKSL 170 (393)
T ss_pred HHHHH
Confidence 65433
No 403
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=44.86 E-value=2.2e+02 Score=25.04 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+...+...+..++...+.....+..........+..+.+...+.+++.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666665554332222222222244556666666666654
No 404
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=43.43 E-value=32 Score=33.64 Aligned_cols=6 Identities=50% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHH
Q 008442 81 YSRATK 86 (565)
Q Consensus 81 ~erAl~ 86 (565)
+.|||.
T Consensus 27 lsral~ 32 (465)
T KOG3973|consen 27 LSRALM 32 (465)
T ss_pred HHHHHH
Confidence 344444
No 405
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.39 E-value=2.9e+02 Score=26.06 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCc-hhHHHHHHHHHHHHHcCCChHHHHHHH
Q 008442 128 EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVW 206 (565)
Q Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~ 206 (565)
..-+-++....||.|-........+...-......+|++|.+.....+...+ -.+.|.+.|+-|+....++.++|..+-
T Consensus 113 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia 192 (236)
T PF00244_consen 113 ESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIA 192 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHH
T ss_pred hHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3334444555666654444332211111235577889999998887666544 457788888888877666888888877
Q ss_pred HHHHHH
Q 008442 207 ERLLKI 212 (565)
Q Consensus 207 e~~l~~ 212 (565)
..++..
T Consensus 193 ~~afd~ 198 (236)
T PF00244_consen 193 KQAFDE 198 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 406
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.13 E-value=3e+02 Score=26.18 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-ccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008442 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (565)
Q Consensus 213 ~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~-~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (565)
.++.....+..|-...-..++..|..+|+.+.+. .|..+.....++..+.+- ..||++.+.+++.
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 5666667777666666677899999999987653 122222223445555442 2478888776654
No 407
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.99 E-value=29 Score=34.30 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHH--HHHHHHHHHHHcCChHHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE--AWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~--lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
|..+++.+...+..+++...++..-+....++. ....|..-+..++..+++... -|.-|++ +.+|+.+.|+..|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEAAHDLA 206 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHHHHHHH
Confidence 566777777777667766666666666666666 667888889999999888754 5566554 45899999999999
Q ss_pred HHHh
Q 008442 242 RCYS 245 (565)
Q Consensus 242 ~al~ 245 (565)
.++.
T Consensus 207 ~a~k 210 (377)
T KOG1308|consen 207 LACK 210 (377)
T ss_pred HHHh
Confidence 9986
No 408
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=42.18 E-value=66 Score=23.65 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=42.7
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCCC
Q 008442 406 EDLRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 406 ~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~~ 470 (565)
++|.+-|...| .|..+.-+..+.++..-..-||+.....+...+ ++=..|+|..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCCC
Confidence 46777787777 578887777665666777888988765442222 3445688888888775543
No 409
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=41.71 E-value=3e+02 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=27.1
Q ss_pred cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008442 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (565)
.+..+.+...+++.+...|.+..+|...+......+ ....+...|++.
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l 213 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-RQSAAIRAYRQL 213 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-CchHHHHHHHHH
Confidence 345555666666666666777777666665544333 333344444443
No 410
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.58 E-value=3e+02 Score=25.69 Aligned_cols=72 Identities=24% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
.+.+|+..+|||.+-- .+..+|- .+|--|..|+...|..+.+.. |+-..-...++++.+-++|
T Consensus 60 ~~eeRA~l~fERGvlY--DSlGL~~--------------LAR~DftQaLai~P~m~~vfN-yLG~Yl~~a~~fdaa~eaF 122 (297)
T COG4785 60 TDEERAQLLFERGVLY--DSLGLRA--------------LARNDFSQALAIRPDMPEVFN-YLGIYLTQAGNFDAAYEAF 122 (297)
T ss_pred ChHHHHHHHHHhcchh--hhhhHHH--------------HHhhhhhhhhhcCCCcHHHHH-HHHHHHHhcccchHHHHHh
Confidence 4567899999999754 4445553 356678889998898888754 3332223357788888888
Q ss_pred HHHHhcccc
Q 008442 117 EKSLLCAFS 125 (565)
Q Consensus 117 ~ral~~~~~ 125 (565)
.-.+.-.+.
T Consensus 123 ds~~ELDp~ 131 (297)
T COG4785 123 DSVLELDPT 131 (297)
T ss_pred hhHhccCCc
Confidence 887765443
No 411
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=40.50 E-value=2.5e+02 Score=28.04 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.0
Q ss_pred HHcCCChHHHHHHHHHHHHHccchHHHHHHHHHH
Q 008442 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (565)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~ 226 (565)
..++ .+.+|.+-++.+|..-|.+.++-..|..+
T Consensus 176 ~~Lg-~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLG-NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHh-hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 3456 78899999999999999888888888876
No 412
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=39.89 E-value=4.8e+02 Score=27.57 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=52.4
Q ss_pred HHHHHH-HHHHHHcCCChHHHHHHHHHHHHHccc--h--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHH
Q 008442 183 RLYAYW-AHLEQSMGKDMVSARGVWERLLKISGA--M--LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (565)
Q Consensus 183 ~l~~~~-a~~e~~~~~~~~~ar~i~e~~l~~~~~--~--~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~ 257 (565)
.+|..+ ++++...+ +++.|...|++++..-.. + .-.+-+.+-......+++.|-..|.+.+. .+.|+..++
T Consensus 267 ~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y 342 (468)
T PF10300_consen 267 ALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFY 342 (468)
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHH
Confidence 355554 67777777 999999999998853211 1 11223333334567899999999999986 456766555
Q ss_pred HHHHH-HHHHhCCH
Q 008442 258 HAWLR-FEREYGTL 270 (565)
Q Consensus 258 ~~~~~-fE~~~G~~ 270 (565)
....- .....|..
T Consensus 343 ~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 343 AYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhhccc
Confidence 43332 33344544
No 413
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=39.58 E-value=3.6e+02 Score=26.05 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 008442 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER-SRASEEEISTVFEKS 119 (565)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~-~~~~~~~~~~if~ra 119 (565)
++..+.+-+-..+|+.+.+...+++++.+ ..+.+.+.+++.+++...++...-|...+..+.. .......+...+...
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYL 183 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 34455555556678888888888887766 3356678889999998887655555444432311 112233444555554
Q ss_pred H
Q 008442 120 L 120 (565)
Q Consensus 120 l 120 (565)
|
T Consensus 184 l 184 (278)
T PF08631_consen 184 L 184 (278)
T ss_pred H
Confidence 4
No 414
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=39.54 E-value=47 Score=19.05 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 219 AWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 219 lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.|...++.....|+++.|.++|++...
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 366677777778888888888887754
No 415
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.12 E-value=3.6e+02 Score=25.97 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHccch--HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 198 DMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~--~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.++-|++.++++.....+. ..+=..|+.+-..-+.+..|--||+....+
T Consensus 152 r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k 202 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK 202 (299)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc
Confidence 4566777777776664332 235566677766666788899999988764
No 416
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.07 E-value=1.2e+02 Score=29.45 Aligned_cols=31 Identities=19% Similarity=0.007 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008442 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (565)
Q Consensus 74 ~~~~~~v~erAl~~~p~~~~lW~~yi~~le~ 104 (565)
+..+.++.+|+++..|-+...|...+..|-.
T Consensus 295 ~neAi~l~qr~ltldpL~e~~nk~lm~~la~ 325 (361)
T COG3947 295 PNEAIQLHQRALTLDPLSEQDNKGLMASLAT 325 (361)
T ss_pred hHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 3446666666666666666666666554433
No 417
>PHA00490 terminal protein
Probab=38.96 E-value=3e+02 Score=24.94 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Q 008442 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (565)
Q Consensus 93 ~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~ 172 (565)
+|-..+|..+|..-+....+.++.++.-..|++ ++..+++.+.+.--.....++. ..+.....+.+...|+.
T Consensus 181 qlq~NFI~sVEgsFNS~~~aDelve~LkkiPpD---DFyElfl~~~EISFE~FDSEg~-----~veasE~~l~ki~sYl~ 252 (266)
T PHA00490 181 QLQDNFIRSVEGSFNSYWEADELVEKLKKIPPD---DFYELFLIYNEISFENFDSEGA-----LVEASESILEKIRSYLN 252 (266)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHhcCCch---HHHHHHHHHhhhhhhhcccccc-----hHHhHHHHHHHHHHHHH
Confidence 567778887887777778888999987777765 3445555444322222222221 23344455666666665
Q ss_pred hhh
Q 008442 173 EQM 175 (565)
Q Consensus 173 ~~~ 175 (565)
.+.
T Consensus 253 ~Y~ 255 (266)
T PHA00490 253 DYF 255 (266)
T ss_pred HHH
Confidence 544
No 418
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=38.81 E-value=4.4e+02 Score=26.85 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcccccHH
Q 008442 55 VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN----CPWVGELWVRSLLSLERS--RASEEEISTVFEKSLLCAFSTFE 128 (565)
Q Consensus 55 ~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~----~p~~~~lW~~yi~~le~~--~~~~~~~~~if~ral~~~~~~~~ 128 (565)
.++++-+.++-- ....++.+.+..+.|..-.. .+..+.+=..|+..|-+. .++.+++..++..++...-....
T Consensus 139 ls~div~~lllS-yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 139 LSPDIVINLLLS-YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred cChhHHHHHHHH-hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 455555554422 12233566677777755443 234556777788777663 46788999999997653221111
Q ss_pred HHHHHH-HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCCh---HHHHH
Q 008442 129 EYLDLF-LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDM---VSARG 204 (565)
Q Consensus 129 ~~~~~~-~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~---~~ar~ 204 (565)
+.+.++ ..|-+ ....... .-...+.+|+..+.+.+...+..+.-+ .++-+..-.+.+. .+.++
T Consensus 218 d~~gL~GRIyKD----~~~~s~~--------~d~~~ldkAi~~Y~kgFe~~~~~Y~GI-N~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 218 DTLGLLGRIYKD----LFLESNF--------TDRESLDKAIEWYRKGFEIEPDYYSGI-NAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HHHHHHHHHHHH----HHHHcCc--------cchHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHcCCcccchHHHHH
Confidence 122222 11111 1111100 011336777777777666443332222 2333443334232 23444
Q ss_pred HH---HHHH-HH--ccchHHHHHHHHHHH--HHcCChHHHHHHHHHHHh
Q 008442 205 VW---ERLL-KI--SGAMLEAWQSYISME--IELDHINEARSIYKRCYS 245 (565)
Q Consensus 205 i~---e~~l-~~--~~~~~~lw~~yi~~e--~~~~~~~~aR~i~~~al~ 245 (565)
|- ...+ +. ......+|.-.--+| .-.|+.++|...+++++.
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 43 2222 11 233456886555554 567999999999999986
No 419
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=38.38 E-value=3.3e+02 Score=28.63 Aligned_cols=11 Identities=0% Similarity=-0.300 Sum_probs=6.1
Q ss_pred CeEEEcCCCCC
Q 008442 392 CTAFLSNINLK 402 (565)
Q Consensus 392 ~~l~V~nl~~~ 402 (565)
..|+.-++|.+
T Consensus 315 ~~VI~~~~P~~ 325 (456)
T PRK10590 315 PHVVNYELPNV 325 (456)
T ss_pred CEEEEeCCCCC
Confidence 45555566654
No 420
>PRK10941 hypothetical protein; Provisional
Probab=38.36 E-value=3.7e+02 Score=26.00 Aligned_cols=65 Identities=14% Similarity=-0.067 Sum_probs=52.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHH
Q 008442 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (565)
Q Consensus 191 ~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~ 257 (565)
...+.+ +++.|..+.++++...|+++.-|..=.-.+.+.|.+..|+.=|+..|. .++.+....+.
T Consensus 190 ~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-~~P~dp~a~~i 254 (269)
T PRK10941 190 ALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-QCPEDPISEMI 254 (269)
T ss_pred HHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCchhHHHH
Confidence 344555 899999999999999999999998888888899999999999999998 34443333333
No 421
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=37.68 E-value=1.5e+02 Score=22.21 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.7
Q ss_pred HcCChHHHHHHHHHHHh
Q 008442 229 ELDHINEARSIYKRCYS 245 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~ 245 (565)
..|+++.|..+|..||.
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46788888888888875
No 422
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=37.65 E-value=4.2e+02 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP----VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p----~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
+....|+.++....+.|....+...+.++....+ ..+.+=+.|+++++..++ ...+...++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 4667899999999999999999988888887542 256788899999887763 3445555555555
No 423
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=36.51 E-value=3.3e+02 Score=24.76 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 008442 25 QYMIYLKYEQSSGDPGRVQLLYERAITD-FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSLLS 101 (565)
Q Consensus 25 ~W~~yi~~e~~~~~~~~~~~lyERal~~-~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~--~~~lW~~yi~~ 101 (565)
.-....+-....|...++...|+.++.- +..+..+-+..+.-..... ++..+...+|.-....|- ++.-...|.+.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~-~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ-EFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3344455555567777788888888775 5566777777666544333 445566667766665542 23333344443
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccc
Q 008442 102 LERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~ 125 (565)
+.- .+....++.-|+.++.+-++
T Consensus 170 laa-~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 170 LAA-QGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHh-cCCchhHHHHHHHHHHhCCC
Confidence 333 45566677778887776544
No 424
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=36.00 E-value=7e+02 Score=28.39 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=60.5
Q ss_pred CCchhHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSD--LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~--lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~ 114 (565)
+++..+....+..+..+|+..- +...|. +.+.+ ..+.+..++ .|+...+....+-...+.+.-+..+..+++-.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~g-k~~ea~~~L-e~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLG-KGDEALKLL-EALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhc-CchhHHHHH-hhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 4555666777777777877654 333333 22233 333344333 34554444456666667666666778899999
Q ss_pred HHHHHHhcccccHHHHHHHHHHHH
Q 008442 115 VFEKSLLCAFSTFEEYLDLFLTRI 138 (565)
Q Consensus 115 if~ral~~~~~~~~~~~~~~~~~~ 138 (565)
+|++++...++ .+....+|.+|.
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHH
Confidence 99999987666 666667777655
No 425
>PF12854 PPR_1: PPR repeat
Probab=35.80 E-value=97 Score=18.88 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 008442 217 LEAWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 217 ~~lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
.-.|-..|+-.-+.|+++.|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45666666666777777777777764
No 426
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=35.51 E-value=11 Score=34.40 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=50.6
Q ss_pred CCCCeEEEcC----CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 389 TDECTAFLSN----INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 389 ~~~~~l~V~n----l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
....+++.|+ |...++++.+...|+.-|.+..+++.++. .|+++.++|+++-...+.-.++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhh
Confidence 3456777787 77788999999999999999999999987 68999999998876655555555
No 427
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=35.48 E-value=98 Score=19.13 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 219 lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.....+.+....|+++.|..++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3455666777889999999999998753
No 428
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=35.12 E-value=1.3e+02 Score=29.96 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=51.3
Q ss_pred hcCCchhHHHHHHHHHhcCCCCHHHHHHHH-HHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 008442 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYT-QYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~~p~~~~lW~~Y~-~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~ 113 (565)
++|.++++...|-+++...|+++-+...-+ .|+. .+.+..+..-++-||...-.....|.+.+. .....+.+.++.
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk--~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~-AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK--QKSFAQAEEDCEAAIALDKLYVKAYSRRMQ-ARESLGNNMEAK 185 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH--HHHHHHHHHhHHHHHHhhHHHHHHHHHHHH-HHHHHhhHHHHH
Confidence 467889999999999999998887666543 3332 223344555555565532111122222222 112235667788
Q ss_pred HHHHHHHhcccc
Q 008442 114 TVFEKSLLCAFS 125 (565)
Q Consensus 114 ~if~ral~~~~~ 125 (565)
.-++++|...+.
T Consensus 186 kD~E~vL~LEP~ 197 (536)
T KOG4648|consen 186 KDCETVLALEPK 197 (536)
T ss_pred HhHHHHHhhCcc
Confidence 888888864433
No 429
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.83 E-value=76 Score=26.20 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=28.3
Q ss_pred CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHc
Q 008442 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVAK 452 (565)
Q Consensus 404 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~-~~~a~~a~~~ 452 (565)
+...|...|+.|..++ ++....+ . -+.|++.|.|.. -.....|+.+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~-~-gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK-Q-GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET-T-EEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC-C-CCcEEEEEEECCChHHHHHHHHH
Confidence 4588999999998765 4444443 2 457999999985 5566777765
No 430
>PRK10941 hypothetical protein; Provisional
Probab=34.70 E-value=1.5e+02 Score=28.55 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~ 90 (565)
++.+++..+-|+.|...|.++..|.+-.- +..+.+....++.-++.-|..||.
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGl-l~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGL-IYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34444444444444444444444443321 222233333344444444444443
No 431
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.27 E-value=45 Score=31.67 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=35.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCcceEEEEEecCH
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGV-SSIRILHDKFTGKSRGLAYVDFIDD 443 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~ 443 (565)
.-|+|+|||.++.-.||+..+...|.+ .++.+. | ++|-||..|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCc
Confidence 459999999999999999999887642 344431 2 357899999764
No 432
>PF13041 PPR_2: PPR repeat family
Probab=34.19 E-value=1.2e+02 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 217 LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 217 ~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.-.|-..+....+.|+++.|.++|+.....
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 446667777777777888888888777653
No 433
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.75 E-value=78 Score=20.95 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 008442 222 SYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.++.-+...|+.+.||++++..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 455666778999999999998875
No 434
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=33.34 E-value=1.3e+02 Score=22.64 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=12.2
Q ss_pred cCChHHHHHHHHHHHh
Q 008442 230 LDHINEARSIYKRCYS 245 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~ 245 (565)
.|+++.|-.+|..+|.
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3778888888888874
No 435
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.16 E-value=62 Score=30.20 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=42.7
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~ 91 (565)
.+.++.+.+-++|.+||...|....=|.....|.++.. ..+.+...|+..++.-|..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCccc
Confidence 34566677788888888888888888888888777655 5566777788877776654
No 436
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=33.03 E-value=65 Score=31.31 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 008442 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI-STVFEKSLLC 122 (565)
Q Consensus 77 ~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~-~~if~ral~~ 122 (565)
++.+|++.+-.--....+|.+|+...+.. ...+.+ ..+..||+..
T Consensus 193 ir~ly~~lVP~~VshetFW~RYFy~v~kl-eq~e~~r~~l~~rai~~ 238 (331)
T KOG2690|consen 193 IRKLYEDLVPSEVSHETFWHRYFYKVEKL-EQEEAKRKELLSRAISS 238 (331)
T ss_pred HHHHHHHhCcccccHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhc
Confidence 67777776543323346888887655543 233333 3467788763
No 437
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=31.93 E-value=8.1 Score=38.58 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
+.+-+.|+|+...++-|..+...||.+..+..+.- ..-....-|+|...+.+..|+. +++..+....+.|.+-
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 45889999999999999999999999998866432 1112234478888999999997 8999999888888774
No 438
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.79 E-value=4.2e+02 Score=24.54 Aligned_cols=85 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHH-------ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------ccCCCCcHHHHHHHH
Q 008442 197 KDMVSARGVWERLLKI-------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK--------RFTGTGSEDICHAWL 261 (565)
Q Consensus 197 ~~~~~ar~i~e~~l~~-------~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~--------~~~~~~~~~i~~~~~ 261 (565)
.+++.|...|.-|+-. +.....+|+..+-+.+..++.+.-...+++|+.. .++.......-..|+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Q ss_pred --HHHHHhCCHHHHHHHHHHHh
Q 008442 262 --RFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 262 --~fE~~~G~~~~~~~~~~k~~ 281 (565)
++.++.|+.+.+..-+.+++
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
No 439
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.59 E-value=8.1e+02 Score=27.77 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=54.3
Q ss_pred hHHHHHHHh--cCCCCChHh-HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 5 RAHLEEQIS--RQDLSDSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 5 R~~~E~~l~--~~~~~~~~~-~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
...|.-|+. +...+++.. .++-+.|.++....|+.+.+...|-++|... ....+-..|++--.-.. -..-...+.
T Consensus 347 K~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s~Vi~kfLdaq~Ikn-Lt~YLe~L~ 424 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPSEVIKKFLDAQRIKN-LTSYLEALH 424 (933)
T ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChHHHHHHhcCHHHHHH-HHHHHHHHH
Confidence 445666652 333334433 3589999999999999999999999998764 44455555544211110 111122344
Q ss_pred HHHHHcCCCCHHHHHHHHH
Q 008442 82 SRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~ 100 (565)
+..+.+-.+..-|-..|+.
T Consensus 425 ~~gla~~dhttlLLncYiK 443 (933)
T KOG2114|consen 425 KKGLANSDHTTLLLNCYIK 443 (933)
T ss_pred HcccccchhHHHHHHHHHH
Confidence 4444433344456666665
No 440
>PRK04841 transcriptional regulator MalT; Provisional
Probab=31.23 E-value=8.6e+02 Score=27.99 Aligned_cols=197 Identities=10% Similarity=0.043 Sum_probs=100.5
Q ss_pred chhhHHHHHHHHHHHcCCC-----CHHHH--HHHH-HHHHHhcCCHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHH
Q 008442 72 KVGNVVRDVYSRATKNCPW-----VGELW--VRSL-LSLERSRASEEEISTVFEKSLLCAF-STFEEYLDLFLTRIDGLR 142 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~-----~~~lW--~~yi-~~le~~~~~~~~~~~if~ral~~~~-~~~~~~~~~~~~~~~~~~ 142 (565)
...+.+..+++++...++. ...+. ...+ -.+....++.+.+...+++++.... ....... .........
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~a~~~lg~~- 500 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI-VATSVLGEV- 500 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHH-
Confidence 3556677777777665432 11111 1111 1122345778888888888886321 1111000 000000000
Q ss_pred HHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc-----h-
Q 008442 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA-----M- 216 (565)
Q Consensus 143 r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~-----~- 216 (565)
... ..++......+.++...... ..............+.+....| +++.|+..+++++..... .
T Consensus 501 -~~~-------~G~~~~A~~~~~~al~~~~~-~g~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 501 -HHC-------KGELARALAMMQQTEQMARQ-HDVYHYALWSLLQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred -HHH-------cCCHHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhcccccc
Confidence 000 01445555666666665432 1111111223344566677777 999999999999876211 1
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 217 --LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDI---CHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 217 --~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i---~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
..++...+......|+++.|+..+.+++... ....+... +..........|+.+.....+..+.
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL-SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh-hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1123333445556799999999999997631 11112111 2222335556788887776666553
No 441
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.86 E-value=1.1e+02 Score=22.06 Aligned_cols=18 Identities=28% Similarity=0.809 Sum_probs=14.7
Q ss_pred HHHHHHhccCCCeeEEEE
Q 008442 406 EDLRRFFSDVGGVSSIRI 423 (565)
Q Consensus 406 ~~l~~~f~~~G~i~~~~~ 423 (565)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999865544
No 442
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=30.52 E-value=1.2e+02 Score=17.67 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 220 WQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 220 w~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
|...+....+.|+++.|.++|.....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556666667777777777777654
No 443
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=7.3e+02 Score=26.79 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHh
Q 008442 217 LEAWQSYISMEIELDH---INEARSIYKRCYS 245 (565)
Q Consensus 217 ~~lw~~yi~~e~~~~~---~~~aR~i~~~al~ 245 (565)
..+-+..+.|...... -+.|+..+.+|+.
T Consensus 416 ~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 416 FGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 4444555555544333 4566777777765
No 444
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=2.9e+02 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=21.9
Q ss_pred HcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhC-CHHHHH
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG-TLEDFD 274 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G-~~~~~~ 274 (565)
..++++.|-.+|..|+. .+...+.||...- ..+.++
T Consensus 22 ~a~nY~eA~~lY~~ale----------YF~~~lKYE~~~~kaKd~Ir 58 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALE----------YFLHALKYEANNKKAKDSIR 58 (439)
T ss_pred chhchHHHHHHHHHHHH----------HHHHHHHhhhcChhHHHHHH
Confidence 34677888888888874 3445666775433 334444
No 445
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.08 E-value=4.3e+02 Score=29.81 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHH
Q 008442 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY 223 (565)
Q Consensus 161 ~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~y 223 (565)
...|.-|+.+....-...+....+...|++.....| +.+.|-.-|-+.|..... ..+...|
T Consensus 347 K~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kg-df~~A~~qYI~tI~~le~-s~Vi~kf 407 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKG-DFDEATDQYIETIGFLEP-SEVIKKF 407 (933)
T ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcccCCh-HHHHHHh
Confidence 356777777766555555666788899999999888 999999988888865332 3344444
No 446
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=28.94 E-value=1.3e+02 Score=26.88 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=48.4
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCe-EEEE
Q 008442 392 CTAFLSNINLKATY-----EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGK-KLSI 464 (565)
Q Consensus 392 ~~l~V~nl~~~~~~-----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~-~l~v 464 (565)
.++++.+++..+-. .....+|.+|......++.+ +.++--|.|.+++.|..|.. ++...+.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 45777777766432 34455666665544333332 23556689999999998876 688889888 7777
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
-++++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777664
No 447
>PF05435 Phi-29_GP3: Phi-29 DNA terminal protein GP3; InterPro: IPR008770 This family consists of DNA terminal protein Gp3 sequences from phi-29 like bacteriophage. DNA terminal protein Gp3 is linked to the 5' ends of both strands of the genome through a phosphodiester bond between the beta-hydroxyl group of a serine residue and the 5'-phosphate of the terminal deoxyadenylate. This protein is essential for DNA replication and is involved in the priming of DNA elongation [].; GO: 0006260 DNA replication, 0006269 DNA replication, synthesis of RNA primer, 0018142 protein-DNA covalent cross-linking; PDB: 2EX3_D.
Probab=27.98 E-value=3.5e+02 Score=24.48 Aligned_cols=42 Identities=26% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHH
Q 008442 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR 137 (565)
Q Consensus 93 ~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~ 137 (565)
+|-..+|..+|..-+.+..+.++.++.-+.|++ ++..+++.+
T Consensus 181 qlq~NFI~sVEgsFNS~~~aDelve~LkkiPpD---DFyElfli~ 222 (266)
T PF05435_consen 181 QLQDNFIRSVEGSFNSFWEADELVEKLKKIPPD---DFYELFLIY 222 (266)
T ss_dssp HHHHHHHHHHHHHH-BSHHHHHHHHHHHTS-HH---HHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHhcCCch---HHHHHHHHH
Confidence 577788888888778888889999987777655 344444443
No 448
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.77 E-value=3.5e+02 Score=29.32 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+.+...++.++........-...-+++....+ ..++|-.+|++++..+++ +....|++-..+.|-...|+.++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 25 AQAVALIDSELPTEALTSLAMLKKAEFLHDVN-ETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKKV 100 (578)
T ss_pred HHHHHHHHHhCCccchhHHHHHHHhhhhhhhh-hhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 33444444444322222222233455555666 788999999999999988 67778888888899999999998843
No 449
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=27.54 E-value=2.2e+02 Score=21.66 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...+|..+|.++|+..++...-|..+.-+..-+.+.-+.|+.++-|+.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888887666666666665555555555556666665554
No 450
>PRK14136 recX recombination regulator RecX; Provisional
Probab=27.41 E-value=6.1e+02 Score=24.98 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYKRCY 244 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~-~~~~aR~i~~~al 244 (565)
.++.|+.++++-+...+.....+...+.|+...| .++.++.+++..-
T Consensus 256 E~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D~I~~vLk~~~ 303 (309)
T PRK14136 256 EFERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSATIVKLLKVGD 303 (309)
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHHHHHHHHHhch
Confidence 3567777777766655555566777788888887 6777777776543
No 451
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.12 E-value=1.7e+02 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK 69 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~ 69 (565)
+...|..|++...+.++.++...+|-+|+..||.+-.|-++|++++-.
T Consensus 835 ~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K~l~md~ie~l~v 882 (913)
T KOG1972|consen 835 ENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAKWLEMDVIEDLPV 882 (913)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHHHHHHHHHHhccc
Confidence 457899999999998889999999999999999999999999887654
No 452
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.02 E-value=2e+02 Score=19.87 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.2
Q ss_pred HHcCCChHHHHHHHHHHHHHccchHH
Q 008442 193 QSMGKDMVSARGVWERLLKISGAMLE 218 (565)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~ 218 (565)
.+++ ++++|+...+.+|+..|++..
T Consensus 12 ykl~-~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 12 YKLG-EYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHTT--HHHHHHHHHHHHHHTTS-HH
T ss_pred HHhh-hHHHHHHHHHHHHhhCCCcHH
Confidence 4566 888888888888888776543
No 453
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.74 E-value=31 Score=34.56 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=50.5
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 390 DECTAFLSNINLKATYE--------DLRRFFSD--VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
..+.+|+.+++...+.. ++..+|.. .+.+..++..++-.+..++|--|++|.....+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34678888887765544 99999998 6778888887776677889999999999999999983
No 454
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.70 E-value=2.1e+02 Score=21.58 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=19.6
Q ss_pred HcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE 264 (565)
..|+++.|-.+|..||. .|..|+..|
T Consensus 18 ~~g~y~eAl~~Y~~aie----------~l~~~lk~e 43 (77)
T cd02683 18 QEGRFQEALVCYQEGID----------LLMQVLKGT 43 (77)
T ss_pred HhccHHHHHHHHHHHHH----------HHHHHHhhC
Confidence 46889999999999985 455566665
No 455
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=26.48 E-value=78 Score=30.80 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 008442 112 ISTVFEKSL 120 (565)
Q Consensus 112 ~~~if~ral 120 (565)
++.+|++.+
T Consensus 193 ir~ly~~lV 201 (331)
T KOG2690|consen 193 IRKLYEDLV 201 (331)
T ss_pred HHHHHHHhC
Confidence 455555543
No 456
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.21 E-value=98 Score=28.95 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=47.1
Q ss_pred HHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 193 ~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
...+ |.+.+-++|++++.-.|....=|.....+....|+++.|-+-|+..+..
T Consensus 6 ~~~~-D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESG-DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccC-ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3445 7888999999999999998999999999999999999999999998863
No 457
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.97 E-value=3e+02 Score=26.84 Aligned_cols=54 Identities=17% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+..+...+ .+..|..+..++++.+|-+...|..++......|+-..+.+-|++.
T Consensus 286 a~~yle~g-~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAG-KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcC-ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44445556 7888888888888888888888888888888888766666655554
No 458
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=25.25 E-value=1e+02 Score=29.10 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=39.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID 442 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 442 (565)
......+++++++..++...+...|..+|.+..+.+...........+.++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEA 276 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhH
Confidence 3556789999999999999999999999999777776554223233444444433
No 459
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=25.20 E-value=4e+02 Score=22.17 Aligned_cols=62 Identities=27% Similarity=0.384 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHcC-CCCHHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 008442 59 LWLDYTQYLDKTLK-VGNVVRDVYSRATKNC-PWVGELWVRSLL--SLERSRASEEEISTVFEKSL 120 (565)
Q Consensus 59 lW~~Y~~~l~~~~~-~~~~~~~v~erAl~~~-p~~~~lW~~yi~--~le~~~~~~~~~~~if~ral 120 (565)
.|...=.|+...+. ....-+.++..|...- -.+.++|..++. .+-.+..+.+.+.+||.+..
T Consensus 43 aWK~lK~~L~~~G~~~~~spr~~~r~A~~~glI~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 43 AWKTLKDYLEYEGISECNSPRDVFREAFKAGLIDDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP 108 (124)
T ss_dssp HHHHHHHHHHHCTSSCCTSHHHHHHHHHHTTSSSHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHHHHcCCCCCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 57666666666553 3333578888888742 356789999874 22223345667788887644
No 460
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.88 E-value=9.2e+02 Score=26.22 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHH--HHcCChHHHHHHHHHH
Q 008442 218 EAWQSYISME--IELDHINEARSIYKRC 243 (565)
Q Consensus 218 ~lw~~yi~~e--~~~~~~~~aR~i~~~a 243 (565)
.++..|..|+ ...||+..|+.++.++
T Consensus 176 ~~e~~f~~f~~l~~~Gd~~~A~e~l~~l 203 (569)
T PRK04778 176 NLEEEFSQFVELTESGDYVEAREILDQL 203 (569)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4888888887 4579999999998887
No 461
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.62 E-value=6.4e+02 Score=24.33 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHcc-----------c-hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCc
Q 008442 198 DMVSARGVWERLLKISG-----------A-MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~-----------~-~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~ 253 (565)
++.+..+|+..+-+.+. . ..+++--=|+++..+.+-.....+|++++......+.|
T Consensus 160 e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 160 EYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred HHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 44455566665555431 1 13455556677888889999999999998754333333
No 462
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=6.5e+02 Score=24.31 Aligned_cols=127 Identities=9% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 96 VRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 96 ~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
..|++.+-.....-.++..+-+.||...+. .+|.|..+.+. .+..-+.+-.+++..
T Consensus 46 m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~----------------------~l~~dL~~El~~l~e 103 (318)
T KOG0530|consen 46 MDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILR----------------------HLMSDLNKELEYLDE 103 (318)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHH----------------------HhHHHHHHHHHHHHH
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 174 QMKNTDGLLRLYAYWAHLEQSMGKDMV-SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~-~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
....++..+++|-.--.+...++ ++. +-.++...++.....++.+|..=--..+..+.++.--..-...|.
T Consensus 104 I~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 104 IIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
No 463
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=23.87 E-value=1.1e+02 Score=25.79 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYIS 225 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~ 225 (565)
+.+.|..||+.++..+|++..+.+.+++
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHH
No 464
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=7.5e+02 Score=24.23 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (565)
++..|..+|..++...+.+.++-+-|++.....|+.+.|..++...=... . +.-..-..++++|-.+-.+..+.....
T Consensus 149 ~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~-~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 149 DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-Q-DKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-h-hhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88899999999999999889999999999999999999999998862210 0 111112456888776665555444444
Q ss_pred HHHh
Q 008442 278 QKVT 281 (565)
Q Consensus 278 ~k~~ 281 (565)
.++.
T Consensus 227 ~~~a 230 (304)
T COG3118 227 RRLA 230 (304)
T ss_pred HHHH
Confidence 4443
No 465
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=22.07 E-value=2.3e+02 Score=29.81 Aligned_cols=7 Identities=29% Similarity=0.064 Sum_probs=3.1
Q ss_pred eEEEEEe
Q 008442 434 GLAYVDF 440 (565)
Q Consensus 434 g~afv~f 440 (565)
|.|++.+
T Consensus 343 G~ai~l~ 349 (456)
T PRK10590 343 GEALSLV 349 (456)
T ss_pred eeEEEEe
Confidence 5554433
No 466
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.90 E-value=1.5e+02 Score=23.05 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=32.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID 442 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 442 (565)
.-|||||++..+.+.-...+....+.-.-+-+..+. ...||+|-..-+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeCC
Confidence 358999999988887777777666544434444332 267999988843
No 467
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=21.77 E-value=9.8e+02 Score=25.42 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHHc-------------cchHHHH------------HHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 008442 198 DMVSARGVWERLLKIS-------------GAMLEAW------------QSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~-------------~~~~~lw------------~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~ 252 (565)
.+.++..+|.++++.- +...++| ...+....+.|..+.|.+.|...+. .++..+
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk-e~p~~~ 293 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK-EFPNLD 293 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh-hCCccc
Confidence 6788889999888751 1111222 1233345677999999999999986 334333
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 253 SEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 253 ~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
...|-...++--.+.+...+++..+.+.
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3334444444434445556666666554
No 468
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=21.04 E-value=2e+02 Score=27.87 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC-------CCCCcceEEEEEecCHHHHHH
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK-------FTGKSRGLAYVDFIDDEHLAA 448 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~g~~~g~afv~f~~~~~a~~ 448 (565)
..+.|...|+..+++--.+-.-|.+||+|.+|.++.+. ...+......+.|-+.+.+..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 35778889999889888888889999999999998764 112234567888888776654
No 469
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=21 Score=36.01 Aligned_cols=77 Identities=8% Similarity=-0.123 Sum_probs=56.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
+.|+..+|...++.++.-+|..||.|..+.+...-..|...-.+||.-.. +.+..+|. +....+.|..++|..+...
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 45777889999999999999999998887765543345566678887764 34667776 6666777888888776543
No 470
>PF13041 PPR_2: PPR repeat family
Probab=20.10 E-value=2.7e+02 Score=18.32 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
|...+....+.+ ++++|.++|+++.+.
T Consensus 6 yn~li~~~~~~~-~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAG-KFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHHHHc
Confidence 445556666777 999999999999987
Done!