Query 008442
Match_columns 565
No_of_seqs 455 out of 3249
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 03:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1E-27 3.5E-32 259.2 29.4 243 21-281 300-568 (679)
2 4e6h_A MRNA 3'-END-processing 99.9 6.8E-25 2.3E-29 237.2 29.6 269 3-283 84-463 (679)
3 2uy1_A Cleavage stimulation fa 99.9 1.4E-23 4.9E-28 220.7 28.0 258 4-284 67-414 (493)
4 2ond_A Cleavage stimulation fa 99.9 2.1E-22 7.1E-27 199.6 29.5 242 19-281 4-268 (308)
5 2ooe_A Cleavage stimulation fa 99.9 1.2E-20 4.2E-25 201.5 30.3 241 22-284 229-493 (530)
6 2uy1_A Cleavage stimulation fa 99.9 7.3E-22 2.5E-26 207.7 19.4 241 4-275 156-444 (493)
7 2ooe_A Cleavage stimulation fa 99.9 2.6E-20 8.8E-25 198.9 26.5 272 3-282 30-384 (530)
8 4fxv_A ELAV-like protein 1; RN 99.8 7E-20 2.4E-24 147.7 11.1 83 388-470 16-99 (99)
9 2ond_A Cleavage stimulation fa 99.8 1.2E-17 4.2E-22 165.1 25.2 215 4-245 35-269 (308)
10 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-18 4.2E-23 153.7 12.8 84 389-472 37-121 (156)
11 2lxi_A RNA-binding protein 10; 99.8 3.1E-19 1.1E-23 141.7 6.6 81 392-472 2-85 (91)
12 2dgs_A DAZ-associated protein 99.8 7.3E-18 2.5E-22 136.4 13.4 84 389-472 8-91 (99)
13 3s8s_A Histone-lysine N-methyl 99.8 4.6E-18 1.6E-22 139.8 11.9 81 390-470 5-86 (110)
14 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-17 3.7E-22 144.6 13.5 85 388-472 39-124 (139)
15 2lkz_A RNA-binding protein 5; 99.7 1.6E-18 5.6E-23 137.9 7.5 79 391-469 9-94 (95)
16 1whw_A Hypothetical protein ri 99.7 1.2E-17 3.9E-22 135.3 12.4 85 389-473 6-91 (99)
17 2cq0_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 135.6 12.8 86 388-473 12-98 (103)
18 2dnz_A Probable RNA-binding pr 99.7 1.6E-17 5.5E-22 133.3 12.7 84 389-472 3-87 (95)
19 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4.1E-22 130.4 11.5 80 392-471 2-82 (83)
20 2dng_A Eukaryotic translation 99.7 2.2E-17 7.6E-22 134.6 13.3 84 388-472 12-95 (103)
21 3p5t_L Cleavage and polyadenyl 99.7 2.1E-18 7.3E-23 136.8 6.9 81 392-472 2-85 (90)
22 2cqd_A RNA-binding region cont 99.7 3.4E-17 1.2E-21 136.7 14.6 85 387-472 13-98 (116)
23 2do4_A Squamous cell carcinoma 99.7 2.4E-17 8.3E-22 133.6 13.3 85 387-472 13-98 (100)
24 2dgo_A Cytotoxic granule-assoc 99.7 4.3E-17 1.5E-21 135.8 15.1 87 387-473 11-98 (115)
25 1x5u_A Splicing factor 3B subu 99.7 2.1E-17 7.3E-22 135.3 12.7 85 388-472 12-97 (105)
26 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 136.1 11.0 85 389-473 10-95 (102)
27 3s7r_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 130.8 11.6 80 388-467 8-87 (87)
28 2fy1_A RNA-binding motif prote 99.7 2.6E-17 9.1E-22 136.9 13.3 83 389-472 5-88 (116)
29 2dnm_A SRP46 splicing factor; 99.7 1.4E-17 4.7E-22 135.9 11.3 86 387-472 9-95 (103)
30 1x5t_A Splicing factor 3B subu 99.7 1.3E-17 4.6E-22 134.1 11.1 84 389-472 3-88 (96)
31 2cpz_A CUG triplet repeat RNA- 99.7 2.5E-17 8.6E-22 137.3 13.1 86 387-472 21-107 (115)
32 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.3E-17 4.3E-22 131.6 10.5 82 389-470 4-86 (87)
33 1p27_B RNA-binding protein 8A; 99.7 1.5E-17 5E-22 136.5 10.7 85 387-471 19-104 (106)
34 3ex7_B RNA-binding protein 8A; 99.7 9.8E-18 3.4E-22 142.3 9.7 86 387-472 18-104 (126)
35 1x4h_A RNA-binding protein 28; 99.7 3.6E-17 1.2E-21 135.4 12.9 86 387-472 11-103 (111)
36 2cpf_A RNA binding motif prote 99.7 2.2E-17 7.5E-22 133.4 11.3 85 389-473 3-91 (98)
37 1wi8_A EIF-4B, eukaryotic tran 99.7 3.2E-17 1.1E-21 133.9 12.3 83 389-472 13-96 (104)
38 1x5s_A Cold-inducible RNA-bind 99.7 2.1E-17 7.1E-22 134.6 11.0 85 388-472 9-94 (102)
39 2dhg_A TRNA selenocysteine ass 99.7 2.9E-17 9.9E-22 134.3 11.7 84 388-472 6-92 (104)
40 2jrs_A RNA-binding protein 39; 99.7 2.8E-17 9.6E-22 134.9 11.5 86 386-471 21-107 (108)
41 2dnh_A Bruno-like 5, RNA bindi 99.7 6.5E-17 2.2E-21 132.4 13.4 84 389-473 13-100 (105)
42 3pgw_S U1-70K; protein-RNA com 99.7 4.1E-17 1.4E-21 167.2 15.0 85 389-473 100-185 (437)
43 2d9p_A Polyadenylate-binding p 99.7 6.7E-17 2.3E-21 131.8 13.2 84 388-473 12-96 (103)
44 3q2s_C Cleavage and polyadenyl 99.7 1.1E-17 3.9E-22 156.5 9.8 81 390-470 67-150 (229)
45 2dgp_A Bruno-like 4, RNA bindi 99.7 2.6E-17 9E-22 135.0 10.8 85 388-472 10-98 (106)
46 2cpe_A RNA-binding protein EWS 99.7 3.9E-17 1.3E-21 135.6 12.0 86 387-472 11-105 (113)
47 1s79_A Lupus LA protein; RRM, 99.7 1.3E-17 4.6E-22 135.1 8.9 80 389-469 9-88 (103)
48 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-17 6.3E-22 136.9 9.9 86 387-472 22-108 (110)
49 1wez_A HnRNP H', FTP-3, hetero 99.7 3.6E-17 1.2E-21 132.6 11.3 82 388-471 12-93 (102)
50 2cph_A RNA binding motif prote 99.7 5.8E-17 2E-21 133.2 12.7 85 388-472 12-99 (107)
51 2x1f_A MRNA 3'-END-processing 99.7 3E-17 1E-21 131.9 10.6 82 391-472 2-84 (96)
52 3ucg_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 129.3 10.9 81 390-470 5-85 (89)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.9E-17 9.9E-22 128.9 10.0 80 389-468 5-85 (85)
54 2do0_A HnRNP M, heterogeneous 99.7 1.7E-16 5.9E-21 132.0 15.3 85 388-473 12-97 (114)
55 2div_A TRNA selenocysteine ass 99.7 3.9E-17 1.4E-21 132.1 11.0 83 389-471 7-95 (99)
56 3ns6_A Eukaryotic translation 99.7 5.2E-18 1.8E-22 137.3 5.6 82 389-470 4-93 (100)
57 4f25_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 136.0 10.8 80 391-472 5-85 (115)
58 2la6_A RNA-binding protein FUS 99.7 6E-17 2E-21 131.0 11.9 81 388-468 10-99 (99)
59 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-16 4.2E-21 130.2 13.8 84 388-472 12-95 (103)
60 2dh8_A DAZ-associated protein 99.7 4.2E-17 1.4E-21 133.5 10.8 86 387-472 12-97 (105)
61 2rs2_A Musashi-1, RNA-binding 99.7 5.2E-17 1.8E-21 133.6 11.2 85 388-472 22-106 (109)
62 4a8x_A RNA-binding protein wit 99.7 3.5E-17 1.2E-21 129.3 9.5 83 390-472 3-87 (88)
63 2cqc_A Arginine/serine-rich sp 99.7 7.3E-17 2.5E-21 129.5 11.4 82 388-469 12-94 (95)
64 1x4b_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 135.5 10.8 84 389-472 25-108 (116)
65 2e5h_A Zinc finger CCHC-type a 99.7 8.2E-17 2.8E-21 128.9 11.5 81 388-468 13-94 (94)
66 2dgx_A KIAA0430 protein; RRM d 99.7 7.4E-17 2.5E-21 129.5 10.8 82 388-472 6-92 (96)
67 2cq3_A RNA-binding protein 9; 99.7 2.4E-16 8.1E-21 128.5 13.9 84 388-473 12-96 (103)
68 2mss_A Protein (musashi1); RNA 99.7 2.2E-17 7.6E-22 126.1 7.2 75 393-467 1-75 (75)
69 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.4E-21 126.3 12.4 83 388-472 7-89 (91)
70 2kxn_B Transformer-2 protein h 99.7 6.7E-17 2.3E-21 137.0 10.4 84 388-471 43-127 (129)
71 3n9u_C Cleavage and polyadenyl 99.7 6.3E-17 2.2E-21 141.7 10.2 81 390-470 54-137 (156)
72 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.5E-16 8.4E-21 128.4 13.1 84 387-472 11-95 (103)
73 1wg5_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 129.9 11.6 83 388-471 12-95 (104)
74 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-16 4.9E-21 126.9 11.2 82 389-472 6-88 (92)
75 2jwn_A Embryonic polyadenylate 99.7 1.1E-16 3.8E-21 135.3 11.1 83 390-472 35-117 (124)
76 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.6E-17 1.2E-21 132.5 7.3 83 388-471 16-99 (100)
77 2m2b_A RNA-binding protein 10; 99.7 5.2E-17 1.8E-21 138.6 8.5 85 387-472 19-110 (131)
78 2khc_A Testis-specific RNP-typ 99.7 1.5E-16 5E-21 133.3 11.1 83 386-468 35-118 (118)
79 2ywk_A Putative RNA-binding pr 99.7 1.3E-16 4.6E-21 127.9 10.2 81 388-469 13-94 (95)
80 2cpy_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 137.5 5.3 83 388-471 12-95 (114)
81 1sjq_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 128.7 9.2 80 388-473 13-95 (105)
82 1p1t_A Cleavage stimulation fa 99.7 5E-17 1.7E-21 132.9 7.6 84 389-472 6-90 (104)
83 2cpi_A CCR4-NOT transcription 99.7 2.2E-16 7.5E-21 130.4 11.2 85 388-472 12-103 (111)
84 2dnn_A RNA-binding protein 12; 99.7 7.6E-17 2.6E-21 131.7 8.3 81 388-470 13-93 (109)
85 2dis_A Unnamed protein product 99.7 2.3E-16 7.9E-21 130.1 11.1 85 389-473 6-95 (109)
86 2cq4_A RNA binding motif prote 99.7 6.4E-17 2.2E-21 134.5 7.7 85 388-472 22-106 (114)
87 2cqp_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 128.6 9.5 82 389-470 13-95 (98)
88 2fc9_A NCL protein; structure 99.7 3.8E-16 1.3E-20 126.8 11.9 82 387-472 11-93 (101)
89 1x4a_A Splicing factor, argini 99.7 4.8E-16 1.6E-20 128.1 12.7 83 387-472 18-101 (109)
90 3ulh_A THO complex subunit 4; 99.7 2.9E-16 1E-20 129.0 11.1 80 388-468 26-106 (107)
91 2kn4_A Immunoglobulin G-bindin 99.7 2.6E-16 8.9E-21 139.2 11.4 85 389-473 68-153 (158)
92 2hgn_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 139.6 5.3 81 389-471 44-124 (139)
93 2lcw_A RNA-binding protein FUS 99.5 5.2E-18 1.8E-22 141.6 0.0 84 389-472 5-97 (116)
94 2dgu_A Heterogeneous nuclear r 99.7 7.7E-16 2.6E-20 125.4 13.0 77 389-473 9-86 (103)
95 1x4e_A RNA binding motif, sing 99.7 6.3E-17 2.1E-21 126.9 6.2 79 389-467 3-82 (85)
96 2hgl_A HNRPF protein, heteroge 99.7 1.3E-16 4.5E-21 135.7 8.5 82 388-470 41-125 (136)
97 1x4c_A Splicing factor, argini 99.7 8.9E-16 3E-20 126.1 13.3 78 388-472 12-95 (108)
98 2db1_A Heterogeneous nuclear r 99.7 1.8E-16 6.3E-21 132.3 9.3 82 388-470 14-98 (118)
99 2lea_A Serine/arginine-rich sp 99.7 1.3E-16 4.3E-21 136.6 8.4 87 387-473 43-130 (135)
100 2nlw_A Eukaryotic translation 99.7 2.4E-16 8.3E-21 128.7 9.7 81 388-470 12-100 (105)
101 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.4E-17 2.9E-21 123.6 6.5 75 392-467 1-76 (77)
102 1iqt_A AUF1, heterogeneous nuc 99.7 5.1E-17 1.7E-21 124.1 5.3 75 393-467 1-75 (75)
103 2kt5_A RNA and export factor-b 99.7 5.1E-16 1.7E-20 131.1 12.0 85 387-472 31-116 (124)
104 1x5o_A RNA binding motif, sing 99.7 7E-16 2.4E-20 128.3 12.2 82 388-470 22-112 (114)
105 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.4E-16 1.2E-20 139.2 10.8 86 387-472 68-154 (165)
106 2ad9_A Polypyrimidine tract-bi 99.7 5.7E-16 1.9E-20 127.7 11.1 80 389-474 29-111 (119)
107 2cq1_A PTB-like protein L; RRM 99.7 1.3E-15 4.6E-20 122.4 13.0 79 389-473 13-94 (101)
108 2fc8_A NCL protein; structure 99.7 1E-15 3.6E-20 124.4 12.5 82 388-472 12-94 (102)
109 2ki2_A SS-DNA binding protein 99.7 4.9E-17 1.7E-21 129.0 4.5 80 392-472 2-82 (90)
110 2ek1_A RNA-binding protein 12; 99.7 1.7E-16 5.8E-21 127.3 7.5 80 390-469 14-94 (95)
111 2err_A Ataxin-2-binding protei 99.7 4E-16 1.4E-20 128.3 9.9 82 387-470 25-107 (109)
112 2wbr_A GW182, gawky, LD47780P; 99.7 2.6E-16 8.9E-21 119.9 8.0 72 391-468 7-79 (89)
113 3r27_A HnRNP L, heterogeneous 99.6 5.2E-16 1.8E-20 123.2 10.0 77 389-471 19-98 (100)
114 1x4d_A Matrin 3; structural ge 99.6 5.9E-16 2E-20 124.3 9.9 78 389-472 13-94 (102)
115 2a3j_A U1 small nuclear ribonu 99.6 5.7E-16 1.9E-20 130.2 10.1 81 389-472 27-112 (127)
116 1wel_A RNA-binding protein 12; 99.6 2E-16 6.9E-21 133.5 7.2 83 388-470 22-104 (124)
117 2dnq_A RNA-binding protein 4B; 99.6 1.4E-15 4.6E-20 120.6 11.5 76 389-472 6-82 (90)
118 2krb_A Eukaryotic translation 99.6 2E-16 6.8E-21 122.7 6.5 73 391-465 1-81 (81)
119 2lmi_A GRSF-1, G-rich sequence 99.6 1.5E-16 5E-21 130.5 6.0 82 388-470 8-92 (107)
120 2cpx_A Hypothetical protein FL 99.6 3.1E-16 1.1E-20 130.6 8.1 85 389-473 23-108 (115)
121 1fj7_A Nucleolin RBD1, protein 99.6 6.3E-17 2.2E-21 131.4 3.7 83 389-472 15-97 (101)
122 2jvr_A Nucleolar protein 3; RN 99.6 5E-16 1.7E-20 127.1 8.4 78 389-470 26-105 (111)
123 2dha_A FLJ20171 protein; RRM d 99.6 2.6E-16 8.9E-21 131.3 6.8 81 389-470 21-105 (123)
124 1wex_A Hypothetical protein (r 99.6 1.8E-15 6.2E-20 122.5 11.5 78 389-472 13-93 (104)
125 2hgm_A HNRPF protein, heteroge 99.6 3.7E-16 1.3E-20 130.6 7.6 80 389-470 40-121 (126)
126 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-15 4.5E-20 131.8 10.9 81 387-467 59-140 (140)
127 2xs2_A Deleted in azoospermia- 99.6 3.4E-16 1.2E-20 127.3 6.2 82 389-472 7-88 (102)
128 1fjc_A Nucleolin RBD2, protein 99.6 7.8E-16 2.7E-20 123.7 8.1 80 388-472 13-93 (96)
129 2hvz_A Splicing factor, argini 99.6 1.6E-15 5.5E-20 123.0 9.9 76 392-472 1-77 (101)
130 1x4g_A Nucleolysin TIAR; struc 99.6 2.4E-15 8.3E-20 123.8 10.9 78 389-472 23-101 (109)
131 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-15 9.1E-20 120.7 10.8 80 388-472 16-96 (97)
132 2dgt_A RNA-binding protein 30; 99.6 4.3E-15 1.5E-19 118.2 11.9 77 388-472 7-84 (92)
133 2cpj_A Non-POU domain-containi 99.6 4.3E-15 1.5E-19 120.0 11.7 79 388-472 12-91 (99)
134 2dnp_A RNA-binding protein 14; 99.6 3.5E-15 1.2E-19 118.2 10.9 76 389-472 7-83 (90)
135 1why_A Hypothetical protein ri 99.6 2.9E-15 9.7E-20 120.5 10.5 78 389-472 15-95 (97)
136 1nu4_A U1A RNA binding domain; 99.6 9.7E-16 3.3E-20 123.4 7.4 81 389-472 6-91 (97)
137 1x4f_A Matrin 3; structural ge 99.6 2.8E-15 9.4E-20 122.1 9.8 79 388-472 22-104 (112)
138 2jvo_A Nucleolar protein 3; nu 99.6 2.9E-15 9.8E-20 122.8 9.9 77 388-472 28-105 (108)
139 2kvi_A Nuclear polyadenylated 99.6 1.6E-15 5.6E-20 121.6 8.1 76 389-472 8-85 (96)
140 2xnq_A Nuclear polyadenylated 99.6 5E-15 1.7E-19 118.9 10.7 76 388-471 19-96 (97)
141 2j8a_A Histone-lysine N-methyl 99.6 2E-15 6.8E-20 122.9 8.2 77 392-468 3-94 (136)
142 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-14 4E-19 117.4 12.9 76 389-472 13-91 (99)
143 1wf1_A RNA-binding protein RAL 99.6 6.6E-15 2.3E-19 121.4 11.3 76 389-472 25-102 (110)
144 3beg_B Splicing factor, argini 99.6 2.1E-15 7.1E-20 125.3 8.3 75 389-470 14-94 (115)
145 2cqh_A IGF-II mRNA-binding pro 99.6 2.9E-15 9.8E-20 119.5 8.7 77 389-472 6-85 (93)
146 2ytc_A PRE-mRNA-splicing facto 99.6 6.4E-15 2.2E-19 115.3 10.2 76 387-468 8-85 (85)
147 2la4_A Nuclear and cytoplasmic 99.6 3.1E-15 1.1E-19 121.3 8.6 75 390-470 26-101 (101)
148 2e5g_A U6 snRNA-specific termi 99.6 1.1E-14 3.9E-19 116.2 11.7 78 390-472 7-84 (94)
149 3lqv_A PRE-mRNA branch site pr 99.6 4.6E-15 1.6E-19 123.5 9.6 80 390-472 7-87 (115)
150 3d2w_A TAR DNA-binding protein 99.6 4.3E-15 1.5E-19 117.0 8.4 76 389-472 9-86 (89)
151 1x5p_A Negative elongation fac 99.6 2.6E-14 9.1E-19 114.8 12.7 77 388-472 12-89 (97)
152 2i2y_A Fusion protein consists 99.6 6.2E-15 2.1E-19 128.9 9.5 79 388-471 70-149 (150)
153 2f3j_A RNA and export factor b 99.6 7E-15 2.4E-19 131.7 9.8 84 387-471 84-168 (177)
154 1l3k_A Heterogeneous nuclear r 99.6 8.9E-15 3E-19 134.3 10.8 85 387-471 9-93 (196)
155 1l3k_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 133.0 11.5 84 389-472 102-185 (196)
156 4f02_A Polyadenylate-binding p 99.6 1.3E-14 4.4E-19 135.0 11.4 82 390-471 14-96 (213)
157 1wf0_A TDP-43, TAR DNA-binding 99.6 6.8E-15 2.3E-19 116.0 8.0 77 390-472 4-80 (88)
158 2dnl_A Cytoplasmic polyadenyla 99.6 2.1E-14 7.3E-19 119.0 10.9 77 389-468 6-86 (114)
159 3md3_A Nuclear and cytoplasmic 99.6 2.8E-14 9.7E-19 127.1 12.5 82 388-469 84-166 (166)
160 1fxl_A Paraneoplastic encephal 99.5 2.2E-14 7.6E-19 127.9 11.6 81 391-471 2-83 (167)
161 3egn_A RNA-binding protein 40; 99.5 1.2E-14 4.3E-19 125.9 9.2 81 389-472 43-132 (143)
162 1whx_A Hypothetical protein ri 99.5 9.4E-15 3.2E-19 120.4 7.9 77 389-471 8-85 (111)
163 2diu_A KIAA0430 protein; struc 99.5 1.9E-14 6.5E-19 110.6 8.9 72 391-472 8-86 (96)
164 1b7f_A Protein (SXL-lethal pro 99.5 1.7E-14 5.9E-19 128.8 10.2 82 390-471 2-84 (168)
165 1wg1_A KIAA1579 protein, homol 99.5 1.8E-14 6.1E-19 113.5 8.8 75 389-470 3-78 (88)
166 2cjk_A Nuclear polyadenylated 99.5 8.8E-15 3E-19 130.6 7.9 80 391-470 87-166 (167)
167 2e44_A Insulin-like growth fac 99.5 1.8E-14 6.3E-19 115.5 8.5 78 389-470 13-92 (96)
168 2qfj_A FBP-interacting repress 99.5 5.7E-14 2E-18 131.0 12.3 84 390-473 124-208 (216)
169 2cq2_A Hypothetical protein LO 99.5 3.3E-14 1.1E-18 115.8 8.8 77 390-472 24-108 (114)
170 2voo_A Lupus LA protein; RNA-b 99.5 5.3E-14 1.8E-18 127.9 11.2 78 391-469 109-186 (193)
171 1sjr_A Polypyrimidine tract-bi 99.5 5E-14 1.7E-18 122.0 10.2 79 389-471 44-125 (164)
172 2yh0_A Splicing factor U2AF 65 99.5 6.6E-14 2.3E-18 128.7 11.7 84 389-472 112-196 (198)
173 3zzy_A Polypyrimidine tract-bi 99.5 8E-14 2.7E-18 116.2 10.8 78 389-471 26-107 (130)
174 2g4b_A Splicing factor U2AF 65 99.5 8.4E-14 2.9E-18 124.8 10.9 78 390-467 93-171 (172)
175 3md3_A Nuclear and cytoplasmic 99.5 7.9E-14 2.7E-18 124.1 10.5 80 392-472 1-81 (166)
176 4f02_A Polyadenylate-binding p 99.5 8.4E-14 2.9E-18 129.5 9.9 79 391-471 103-182 (213)
177 2cjk_A Nuclear polyadenylated 99.5 5.2E-14 1.8E-18 125.5 8.1 80 390-470 2-81 (167)
178 2e5i_A Heterogeneous nuclear r 99.5 2.3E-13 8E-18 113.0 11.3 75 391-471 25-103 (124)
179 2hzc_A Splicing factor U2AF 65 99.5 8.1E-14 2.8E-18 109.5 7.7 72 389-466 4-86 (87)
180 2bz2_A Negative elongation fac 99.5 1.3E-13 4.6E-18 115.1 9.3 76 389-472 37-113 (121)
181 3pgw_A U1-A; protein-RNA compl 99.5 1.5E-12 5.1E-17 126.7 18.0 81 388-471 6-91 (282)
182 3tyt_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 125.9 10.2 76 390-470 3-80 (205)
183 1w3b_A UDP-N-acetylglucosamine 99.5 3.4E-11 1.2E-15 122.4 28.2 269 3-281 51-332 (388)
184 4eqf_A PEX5-related protein; a 99.5 5.6E-12 1.9E-16 127.0 22.1 253 6-281 48-308 (365)
185 1b7f_A Protein (SXL-lethal pro 99.5 3.4E-13 1.1E-17 120.3 11.6 79 389-467 87-168 (168)
186 2pe8_A Splicing factor 45; RRM 99.5 3.5E-13 1.2E-17 109.2 10.3 81 390-470 7-94 (105)
187 4h7y_A Dual specificity protei 99.5 8.2E-13 2.8E-17 110.0 12.6 62 182-245 61-122 (161)
188 3hym_B Cell division cycle pro 99.4 3.1E-11 1.1E-15 119.1 26.5 237 24-280 23-296 (330)
189 3nmr_A Cugbp ELAV-like family 99.4 2E-13 7E-18 122.6 9.5 82 390-471 2-89 (175)
190 2qfj_A FBP-interacting repress 99.4 2.1E-13 7.3E-18 127.1 9.9 81 390-470 27-108 (216)
191 1w3b_A UDP-N-acetylglucosamine 99.4 5.8E-11 2E-15 120.7 28.7 269 3-281 85-366 (388)
192 3nmr_A Cugbp ELAV-like family 99.4 2.8E-13 9.4E-18 121.7 9.9 79 389-468 93-175 (175)
193 1fxl_A Paraneoplastic encephal 99.4 5.5E-13 1.9E-17 118.7 10.6 79 389-467 86-167 (167)
194 1fje_B Nucleolin RBD12, protei 99.4 4.5E-13 1.5E-17 120.4 9.6 77 389-470 97-174 (175)
195 3hym_B Cell division cycle pro 99.4 1.2E-10 4.2E-15 114.7 27.4 261 4-273 41-324 (330)
196 1fch_A Peroxisomal targeting s 99.4 5.3E-11 1.8E-15 119.7 25.0 115 7-123 48-162 (368)
197 3u1l_A PRE-mRNA-splicing facto 99.4 5.8E-13 2E-17 123.5 7.9 80 387-472 130-231 (240)
198 4h7y_A Dual specificity protei 99.4 4.5E-12 1.5E-16 105.6 12.1 103 19-124 9-125 (161)
199 4eqf_A PEX5-related protein; a 99.4 5.8E-11 2E-15 119.5 23.1 205 57-281 65-274 (365)
200 2y4t_A DNAJ homolog subfamily 99.4 5.6E-10 1.9E-14 115.5 30.9 253 7-281 14-284 (450)
201 2ghp_A U4/U6 snRNA-associated 99.4 9.9E-13 3.4E-17 128.7 9.5 82 389-470 208-291 (292)
202 3smz_A Protein raver-1, ribonu 99.4 2E-12 7E-17 125.9 11.4 83 389-472 182-266 (284)
203 1qm9_A Polypyrimidine tract-bi 99.4 2.9E-12 9.9E-17 117.6 11.7 77 390-471 2-80 (198)
204 3cv0_A Peroxisome targeting si 99.4 7.6E-11 2.6E-15 116.1 22.8 98 24-123 22-119 (327)
205 1fje_B Nucleolin RBD12, protei 99.4 1.8E-13 6.1E-18 123.1 3.4 83 388-471 10-92 (175)
206 3smz_A Protein raver-1, ribonu 99.4 2.8E-12 9.7E-17 124.9 11.8 83 390-472 94-177 (284)
207 2dit_A HIV TAT specific factor 99.4 6.4E-12 2.2E-16 103.6 12.2 82 387-472 11-104 (112)
208 2xpi_A Anaphase-promoting comp 99.4 2.9E-10 1E-14 122.3 28.7 237 21-281 303-543 (597)
209 2xpi_A Anaphase-promoting comp 99.4 3.6E-10 1.2E-14 121.6 29.4 248 3-281 323-577 (597)
210 3ieg_A DNAJ homolog subfamily 99.4 8.2E-10 2.8E-14 110.0 29.9 215 4-245 22-262 (359)
211 3ieg_A DNAJ homolog subfamily 99.3 1.4E-09 4.8E-14 108.2 30.9 249 3-281 55-333 (359)
212 2adc_A Polypyrimidine tract-bi 99.3 1.8E-12 6.3E-17 121.8 8.8 78 389-471 32-111 (229)
213 1jmt_A Splicing factor U2AF 35 99.3 6.8E-13 2.3E-17 107.4 3.5 71 396-467 20-103 (104)
214 2pl2_A Hypothetical conserved 99.3 1.1E-10 3.8E-15 108.6 19.2 197 22-243 4-211 (217)
215 1fch_A Peroxisomal targeting s 99.3 6E-10 2E-14 111.9 25.9 240 37-282 39-313 (368)
216 2ghp_A U4/U6 snRNA-associated 99.3 4.6E-12 1.6E-16 123.9 9.8 82 386-469 36-117 (292)
217 2y4t_A DNAJ homolog subfamily 99.3 1.2E-09 4.3E-14 112.9 28.8 270 3-281 44-356 (450)
218 3sde_A Paraspeckle component 1 99.3 7.4E-12 2.5E-16 120.1 10.1 79 386-470 17-96 (261)
219 3sde_A Paraspeckle component 1 99.3 8.4E-12 2.9E-16 119.7 10.2 82 390-472 95-181 (261)
220 3tyt_A Heterogeneous nuclear r 99.3 4.5E-12 1.5E-16 116.5 7.2 76 390-467 122-204 (205)
221 2d9o_A DNAJ (HSP40) homolog, s 99.3 7.4E-11 2.5E-15 94.1 12.9 66 401-472 27-92 (100)
222 3v4m_A Splicing factor U2AF 65 99.3 8.5E-12 2.9E-16 101.0 7.3 81 390-470 4-97 (105)
223 3uq3_A Heat shock protein STI1 99.3 7.6E-09 2.6E-13 97.8 29.0 227 21-283 3-236 (258)
224 2g4b_A Splicing factor U2AF 65 99.3 1.3E-11 4.6E-16 110.3 9.0 76 389-470 2-88 (172)
225 2ho1_A Type 4 fimbrial biogene 99.2 2E-09 7E-14 101.8 24.7 203 19-245 32-237 (252)
226 3cv0_A Peroxisome targeting si 99.2 2.8E-09 9.5E-14 104.8 26.4 230 3-282 39-268 (327)
227 3pgw_A U1-A; protein-RNA compl 99.2 2.3E-11 8E-16 118.2 11.1 76 388-468 204-281 (282)
228 2q7f_A YRRB protein; TPR, prot 99.2 5.2E-10 1.8E-14 105.1 19.7 215 24-265 24-238 (243)
229 1qm9_A Polypyrimidine tract-bi 99.2 1.3E-11 4.4E-16 113.2 8.0 77 389-470 118-197 (198)
230 2adc_A Polypyrimidine tract-bi 99.2 2.4E-11 8.1E-16 114.2 9.7 77 389-470 149-228 (229)
231 2vq2_A PILW, putative fimbrial 99.2 4.8E-09 1.6E-13 96.9 25.5 202 20-245 5-210 (225)
232 3ue2_A Poly(U)-binding-splicin 99.2 2.9E-11 9.9E-16 99.8 8.8 80 390-469 19-108 (118)
233 3fp2_A TPR repeat-containing p 99.2 3.6E-09 1.2E-13 112.0 27.0 270 3-282 43-406 (537)
234 2yh0_A Splicing factor U2AF 65 99.2 3.1E-11 1.1E-15 110.6 9.3 76 390-471 3-89 (198)
235 2h6f_A Protein farnesyltransfe 99.2 3.5E-09 1.2E-13 107.2 24.5 203 19-243 93-302 (382)
236 3vtx_A MAMA; tetratricopeptide 99.2 6.7E-09 2.3E-13 93.3 22.7 167 21-245 3-169 (184)
237 3u4t_A TPR repeat-containing p 99.1 7.7E-09 2.6E-13 99.0 22.8 234 23-281 3-248 (272)
238 1xnf_A Lipoprotein NLPI; TPR, 99.1 2E-08 6.7E-13 96.1 25.6 217 4-246 24-244 (275)
239 2q7f_A YRRB protein; TPR, prot 99.1 5.6E-09 1.9E-13 97.9 20.9 200 4-231 42-241 (243)
240 2pl2_A Hypothetical conserved 99.1 1.3E-08 4.5E-13 94.4 22.8 210 53-279 1-210 (217)
241 2gw1_A Mitochondrial precursor 99.1 6.8E-09 2.3E-13 109.0 22.9 250 4-281 208-476 (514)
242 2h6f_A Protein farnesyltransfe 99.1 1.1E-08 3.8E-13 103.5 23.1 221 3-245 115-347 (382)
243 3u4t_A TPR repeat-containing p 99.1 9.4E-09 3.2E-13 98.3 21.1 229 3-264 21-265 (272)
244 3fp2_A TPR repeat-containing p 99.1 4E-08 1.4E-12 103.9 27.9 252 22-281 24-371 (537)
245 3tht_A Alkylated DNA repair pr 99.1 2.2E-10 7.4E-15 112.2 8.7 74 389-468 16-97 (345)
246 4abn_A Tetratricopeptide repea 99.1 1.4E-08 4.9E-13 106.2 22.9 199 22-274 101-312 (474)
247 2dnr_A Synaptojanin-1; RRM dom 99.0 7.1E-10 2.4E-14 84.5 8.0 73 390-470 6-86 (91)
248 2gw1_A Mitochondrial precursor 99.0 1.1E-07 3.9E-12 99.6 28.1 253 21-281 4-331 (514)
249 3uq3_A Heat shock protein STI1 99.0 2.8E-08 9.7E-13 93.8 21.2 206 3-245 23-235 (258)
250 2vq2_A PILW, putative fimbrial 99.0 1.2E-07 4.2E-12 87.3 24.0 206 52-280 3-208 (225)
251 2ho1_A Type 4 fimbrial biogene 99.0 2.5E-07 8.5E-12 87.2 26.5 202 53-281 32-236 (252)
252 4g1t_A Interferon-induced prot 99.0 1.5E-07 5.1E-12 97.9 27.1 236 3-246 156-401 (472)
253 3mkr_A Coatomer subunit epsilo 99.0 2.4E-07 8.3E-12 90.1 26.3 211 8-245 50-263 (291)
254 4gyw_A UDP-N-acetylglucosamine 99.0 3.8E-08 1.3E-12 107.6 22.1 170 18-245 4-173 (723)
255 3s6e_A RNA-binding protein 39; 98.9 1.1E-09 3.9E-14 89.5 6.6 76 391-470 7-93 (114)
256 4abn_A Tetratricopeptide repea 98.9 1.3E-07 4.3E-12 98.9 22.0 191 40-281 85-285 (474)
257 4a1s_A PINS, partner of inscut 98.9 9.8E-07 3.4E-11 89.7 27.8 261 21-285 46-334 (411)
258 4a1s_A PINS, partner of inscut 98.9 3.3E-07 1.1E-11 93.3 23.2 270 3-287 66-376 (411)
259 3as5_A MAMA; tetratricopeptide 98.9 3.4E-07 1.2E-11 81.2 20.6 167 22-246 7-173 (186)
260 3ro2_A PINS homolog, G-protein 98.9 3.2E-07 1.1E-11 89.8 22.3 125 157-283 199-332 (338)
261 1owx_A Lupus LA protein, SS-B, 98.8 1.5E-08 5E-13 82.8 9.8 75 388-468 15-94 (121)
262 3sf4_A G-protein-signaling mod 98.8 5.5E-07 1.9E-11 91.1 23.7 129 156-286 202-339 (406)
263 3nf1_A KLC 1, kinesin light ch 98.8 5.9E-07 2E-11 87.2 21.7 248 18-282 22-306 (311)
264 4i17_A Hypothetical protein; T 98.8 1.3E-06 4.4E-11 81.1 22.3 200 22-245 6-208 (228)
265 1ufw_A Synaptojanin 2; RNP dom 98.8 1.1E-08 3.6E-13 78.4 6.2 72 390-469 14-94 (95)
266 3vtx_A MAMA; tetratricopeptide 98.7 7.8E-07 2.7E-11 79.5 18.7 156 3-220 23-178 (184)
267 1xnf_A Lipoprotein NLPI; TPR, 98.7 5.1E-07 1.8E-11 86.1 18.2 209 3-240 61-269 (275)
268 3ro2_A PINS homolog, G-protein 98.7 8.2E-06 2.8E-10 79.6 26.5 259 23-285 5-294 (338)
269 1ouv_A Conserved hypothetical 98.7 1.5E-05 5.2E-10 76.1 27.3 228 20-280 3-248 (273)
270 4g1t_A Interferon-induced prot 98.7 4.4E-06 1.5E-10 86.7 25.0 126 4-129 70-211 (472)
271 3sf4_A G-protein-signaling mod 98.6 1.3E-05 4.5E-10 80.8 27.0 258 22-283 8-296 (406)
272 3dra_A Protein farnesyltransfe 98.6 3.8E-06 1.3E-10 81.7 21.0 104 22-125 31-142 (306)
273 3mkr_A Coatomer subunit epsilo 98.6 2.5E-05 8.6E-10 75.7 26.4 230 18-280 28-261 (291)
274 3edt_B KLC 2, kinesin light ch 98.6 2.4E-06 8.3E-11 81.4 19.0 229 35-282 13-280 (283)
275 2r5s_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 81.4 11.1 164 24-245 7-172 (176)
276 3dxb_A Thioredoxin N-terminall 98.5 1.9E-07 6.4E-12 86.9 8.6 67 403-469 141-212 (222)
277 3qky_A Outer membrane assembly 98.5 2.3E-05 7.8E-10 74.3 23.2 185 22-246 14-224 (261)
278 3dra_A Protein farnesyltransfe 98.5 1.4E-05 4.8E-10 77.6 21.9 220 4-245 52-286 (306)
279 4i17_A Hypothetical protein; T 98.5 1E-05 3.5E-10 74.9 20.3 170 54-245 4-176 (228)
280 4gyw_A UDP-N-acetylglucosamine 98.5 6.8E-06 2.3E-10 89.9 21.3 171 52-283 4-174 (723)
281 1ouv_A Conserved hypothetical 98.5 5.7E-05 1.9E-09 72.0 24.6 208 4-245 25-250 (273)
282 3q7a_A Farnesyltransferase alp 98.4 9.3E-05 3.2E-09 72.8 25.6 194 24-232 55-257 (349)
283 3nf1_A KLC 1, kinesin light ch 98.4 2.4E-05 8.1E-10 75.6 21.4 179 53-245 23-223 (311)
284 2pzi_A Probable serine/threoni 98.4 2.1E-06 7.2E-11 93.9 15.2 171 34-229 402-580 (681)
285 3qou_A Protein YBBN; thioredox 98.4 9.7E-06 3.3E-10 78.4 18.3 169 53-245 113-283 (287)
286 3urz_A Uncharacterized protein 98.4 2.3E-05 8E-10 71.6 19.5 110 23-134 4-129 (208)
287 3as5_A MAMA; tetratricopeptide 98.4 1.5E-05 5E-10 70.4 17.5 112 5-122 28-139 (186)
288 2vsy_A XCC0866; transferase, g 98.4 8.2E-06 2.8E-10 87.2 18.5 87 37-125 3-89 (568)
289 4ga2_A E3 SUMO-protein ligase 98.4 7.3E-06 2.5E-10 70.8 14.5 125 2-127 7-134 (150)
290 4gco_A Protein STI-1; structur 98.4 1.9E-05 6.3E-10 66.0 16.1 109 18-128 8-116 (126)
291 3esl_A Checkpoint serine/threo 98.3 1.3E-05 4.3E-10 71.0 14.8 119 2-123 9-145 (202)
292 2wvi_A Mitotic checkpoint seri 98.3 2.7E-05 9.4E-10 66.9 16.1 110 4-123 2-126 (164)
293 2vgx_A Chaperone SYCD; alterna 98.3 1E-05 3.5E-10 69.7 12.9 113 5-123 7-119 (148)
294 4a1g_A Mitotic checkpoint seri 98.3 2.9E-05 9.8E-10 65.8 14.9 109 4-123 9-131 (152)
295 3gyz_A Chaperone protein IPGC; 98.2 2E-05 6.7E-10 68.2 14.1 106 18-125 31-136 (151)
296 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00022 7.7E-09 65.8 22.2 181 24-245 5-212 (225)
297 3dss_A Geranylgeranyl transfer 98.2 0.00068 2.3E-08 66.3 26.2 190 34-245 40-266 (331)
298 2e2e_A Formate-dependent nitri 98.2 2.3E-05 7.7E-10 69.4 14.5 118 3-125 28-147 (177)
299 2xcb_A PCRH, regulatory protei 98.2 6.4E-05 2.2E-09 63.9 16.4 105 18-124 13-117 (142)
300 3edt_B KLC 2, kinesin light ch 98.2 0.0001 3.4E-09 69.9 19.4 162 72-246 15-198 (283)
301 2vsy_A XCC0866; transferase, g 98.2 4.9E-05 1.7E-09 81.1 18.7 116 3-124 7-122 (568)
302 2pzi_A Probable serine/threoni 98.2 2.9E-05 9.9E-10 84.8 17.0 152 70-245 403-562 (681)
303 3dss_A Geranylgeranyl transfer 98.2 0.0012 4.2E-08 64.5 26.8 228 5-245 50-303 (331)
304 2fo7_A Synthetic consensus TPR 98.2 0.00016 5.5E-09 59.6 17.8 71 26-97 4-74 (136)
305 2c2l_A CHIP, carboxy terminus 98.2 1.5E-05 5.2E-10 76.8 12.7 192 22-245 3-198 (281)
306 4a1g_A Mitotic checkpoint seri 98.1 3E-05 1E-09 65.6 12.6 83 175-266 64-148 (152)
307 3esl_A Checkpoint serine/threo 98.1 0.00015 5.1E-09 64.2 17.3 101 162-266 58-162 (202)
308 4ga2_A E3 SUMO-protein ligase 98.1 3E-05 1E-09 66.9 12.8 98 3-104 49-146 (150)
309 4aez_C MAD3, mitotic spindle c 98.1 2.8E-05 9.6E-10 70.1 12.5 112 3-123 53-180 (223)
310 1hz4_A MALT regulatory protein 98.1 0.0018 6.1E-08 64.5 26.4 267 4-284 33-323 (373)
311 3upv_A Heat shock protein STI1 98.1 0.00015 5E-09 60.0 15.2 100 22-123 3-102 (126)
312 2fo7_A Synthetic consensus TPR 98.0 0.00013 4.3E-09 60.2 14.7 115 3-123 19-133 (136)
313 2r5s_A Uncharacterized protein 98.0 5.7E-05 1.9E-09 66.9 13.2 115 4-124 25-139 (176)
314 3sz7_A HSC70 cochaperone (SGT) 98.0 8.5E-05 2.9E-09 64.8 14.2 104 20-125 8-111 (164)
315 1elw_A TPR1-domain of HOP; HOP 98.0 0.00023 8E-09 57.2 15.9 103 22-126 3-105 (118)
316 2e2e_A Formate-dependent nitri 98.0 7E-05 2.4E-09 66.1 13.5 85 36-121 23-109 (177)
317 2lni_A Stress-induced-phosphop 98.0 0.00015 5E-09 60.0 14.6 105 19-125 12-116 (133)
318 2l9w_A U4/U6 snRNA-associated- 98.0 2E-05 6.9E-10 61.4 8.1 71 390-466 20-96 (117)
319 2vyi_A SGTA protein; chaperone 98.0 0.00026 8.9E-09 58.0 15.8 105 20-126 9-113 (131)
320 4f3v_A ESX-1 secretion system 98.0 0.00026 8.9E-09 67.3 17.5 187 35-246 18-237 (282)
321 1a17_A Serine/threonine protei 98.0 0.0009 3.1E-08 57.6 19.4 103 22-126 12-114 (166)
322 3qky_A Outer membrane assembly 98.0 0.00077 2.6E-08 63.5 20.4 146 51-246 9-177 (261)
323 3q7a_A Farnesyltransferase alp 98.0 0.0004 1.4E-08 68.3 18.5 222 4-245 73-330 (349)
324 3ulq_A Response regulator aspa 98.0 0.00066 2.2E-08 68.1 20.8 223 4-246 122-368 (383)
325 3qou_A Protein YBBN; thioredox 98.0 0.0006 2E-08 65.7 19.5 170 87-281 112-282 (287)
326 1p5q_A FKBP52, FK506-binding p 98.0 2.8E-05 9.7E-10 77.0 10.3 94 188-285 202-296 (336)
327 1na0_A Designed protein CTPR3; 97.9 0.00049 1.7E-08 55.8 15.9 102 23-126 9-110 (125)
328 1qqe_A Vesicular transport pro 97.9 0.0014 4.9E-08 63.0 21.7 210 41-282 3-227 (292)
329 4aez_C MAD3, mitotic spindle c 97.9 0.00012 4.2E-09 65.9 12.5 95 162-265 98-196 (223)
330 2kck_A TPR repeat; tetratricop 97.9 8.1E-05 2.8E-09 59.4 10.4 101 22-124 5-108 (112)
331 3ulq_A Response regulator aspa 97.9 0.0013 4.5E-08 65.9 21.6 234 30-281 110-366 (383)
332 4gco_A Protein STI-1; structur 97.9 0.00016 5.4E-09 60.2 12.0 92 3-99 31-122 (126)
333 1hxi_A PEX5, peroxisome target 97.9 0.00014 4.7E-09 60.0 11.5 99 24-124 18-116 (121)
334 3q49_B STIP1 homology and U bo 97.9 0.00024 8.1E-09 59.4 13.2 100 22-123 8-107 (137)
335 3u3w_A Transcriptional activat 97.8 0.0041 1.4E-07 59.7 23.2 163 72-245 89-265 (293)
336 1hz4_A MALT regulatory protein 97.8 0.0085 2.9E-07 59.5 26.0 237 30-283 21-282 (373)
337 3gyz_A Chaperone protein IPGC; 97.8 0.00039 1.3E-08 59.9 13.7 107 171-281 25-131 (151)
338 1qqe_A Vesicular transport pro 97.8 0.0014 4.6E-08 63.2 19.2 209 3-245 3-227 (292)
339 3urz_A Uncharacterized protein 97.8 0.00066 2.3E-08 61.8 16.0 114 3-121 22-152 (208)
340 1a17_A Serine/threonine protei 97.8 0.00041 1.4E-08 59.9 13.7 112 3-119 31-143 (166)
341 2qfc_A PLCR protein; TPR, HTH, 97.8 0.0057 1.9E-07 58.7 23.0 162 73-245 90-265 (293)
342 1dce_A Protein (RAB geranylger 97.7 0.0014 4.9E-08 69.5 19.5 172 38-232 44-241 (567)
343 2dba_A Smooth muscle cell asso 97.7 0.00077 2.6E-08 56.8 14.4 104 20-125 25-131 (148)
344 2xm6_A Protein corresponding t 97.7 0.013 4.4E-07 60.9 26.4 259 4-282 134-431 (490)
345 3u64_A Protein TP_0956; tetrat 97.7 0.0071 2.4E-07 57.0 21.1 186 43-246 52-269 (301)
346 1elw_A TPR1-domain of HOP; HOP 97.7 0.0009 3.1E-08 53.6 13.2 66 179-245 35-100 (118)
347 2xm6_A Protein corresponding t 97.7 0.057 1.9E-06 55.9 30.3 228 3-245 97-359 (490)
348 1hxi_A PEX5, peroxisome target 97.7 0.00025 8.7E-09 58.4 9.8 85 3-92 35-119 (121)
349 2yhc_A BAMD, UPF0169 lipoprote 97.7 0.003 1E-07 58.0 18.4 176 3-216 22-217 (225)
350 1elr_A TPR2A-domain of HOP; HO 97.6 0.00098 3.3E-08 54.5 13.4 101 22-124 3-110 (131)
351 2xcb_A PCRH, regulatory protei 97.6 0.0011 3.9E-08 55.9 13.9 100 178-281 14-113 (142)
352 1p5q_A FKBP52, FK506-binding p 97.6 0.0033 1.1E-07 61.9 19.2 106 21-128 145-265 (336)
353 3sz7_A HSC70 cochaperone (SGT) 97.6 0.00073 2.5E-08 58.7 12.6 79 166-245 29-107 (164)
354 2dhx_A Poly (ADP-ribose) polym 97.6 0.002 7E-08 49.9 13.1 78 389-474 6-88 (104)
355 3q15_A PSP28, response regulat 97.6 0.011 3.7E-07 59.0 22.9 240 29-287 107-369 (378)
356 2vyi_A SGTA protein; chaperone 97.6 0.0012 4.3E-08 53.8 13.3 94 4-102 31-124 (131)
357 2vgx_A Chaperone SYCD; alterna 97.6 0.0018 6.2E-08 55.3 14.6 100 178-281 17-116 (148)
358 3upv_A Heat shock protein STI1 97.6 0.00078 2.7E-08 55.4 11.9 93 3-100 22-120 (126)
359 2wvi_A Mitotic checkpoint seri 97.6 0.0016 5.5E-08 55.9 13.7 96 162-266 44-143 (164)
360 2ifu_A Gamma-SNAP; membrane fu 97.6 0.0034 1.2E-07 60.9 18.2 48 198-245 130-183 (307)
361 2lni_A Stress-induced-phosphop 97.6 0.00076 2.6E-08 55.5 11.6 95 3-102 34-128 (133)
362 2dba_A Smooth muscle cell asso 97.5 0.0011 3.7E-08 55.8 12.5 97 164-264 44-143 (148)
363 3q15_A PSP28, response regulat 97.5 0.0072 2.5E-07 60.3 20.3 222 4-245 120-364 (378)
364 2ifu_A Gamma-SNAP; membrane fu 97.5 0.024 8.2E-07 54.7 22.9 179 37-244 30-222 (307)
365 1na0_A Designed protein CTPR3; 97.5 0.0024 8.3E-08 51.5 13.2 93 3-100 27-119 (125)
366 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0058 2E-07 54.7 16.9 103 22-126 37-155 (198)
367 3k9i_A BH0479 protein; putativ 97.4 0.00051 1.8E-08 55.9 8.9 89 4-94 9-97 (117)
368 1zu2_A Mitochondrial import re 97.4 0.00078 2.7E-08 57.8 10.0 88 38-125 17-123 (158)
369 2kat_A Uncharacterized protein 97.4 0.00072 2.5E-08 54.7 9.4 80 41-122 3-82 (115)
370 4f3v_A ESX-1 secretion system 97.4 0.00061 2.1E-08 64.8 9.9 195 3-226 24-250 (282)
371 3k9i_A BH0479 protein; putativ 97.3 0.00096 3.3E-08 54.2 9.2 81 165-246 7-90 (117)
372 2kck_A TPR repeat; tetratricop 97.3 0.0016 5.5E-08 51.5 10.3 93 186-280 10-103 (112)
373 2xev_A YBGF; tetratricopeptide 97.3 0.0037 1.3E-07 51.2 12.7 62 183-245 40-104 (129)
374 4gcn_A Protein STI-1; structur 97.3 0.003 1E-07 52.3 12.0 101 22-124 7-114 (127)
375 2kat_A Uncharacterized protein 97.3 0.002 6.9E-08 51.9 10.6 76 169-245 6-81 (115)
376 1hh8_A P67PHOX, NCF-2, neutrop 97.3 0.0032 1.1E-07 56.9 13.1 102 22-125 36-153 (213)
377 3rkv_A Putative peptidylprolyl 97.3 0.008 2.7E-07 51.7 15.1 103 22-126 10-130 (162)
378 3q49_B STIP1 homology and U bo 97.3 0.0064 2.2E-07 50.3 14.0 95 183-281 10-104 (137)
379 2xev_A YBGF; tetratricopeptide 97.2 0.011 3.7E-07 48.3 14.8 97 27-125 6-108 (129)
380 2c2l_A CHIP, carboxy terminus 97.2 0.013 4.6E-07 55.8 17.3 163 54-245 1-163 (281)
381 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.01 3.6E-07 53.4 15.7 114 163-281 21-148 (213)
382 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0082 2.8E-07 61.9 16.3 103 21-125 266-383 (457)
383 3rjv_A Putative SEL1 repeat pr 97.1 0.036 1.2E-06 50.2 18.6 178 42-245 5-196 (212)
384 1na3_A Designed protein CTPR2; 97.1 0.0067 2.3E-07 46.0 11.7 78 22-100 8-85 (91)
385 1xi4_A Clathrin heavy chain; a 97.1 0.11 3.6E-06 59.6 25.3 206 37-267 1090-1327(1630)
386 1zu2_A Mitochondrial import re 97.1 0.0049 1.7E-07 52.9 11.4 86 3-92 20-125 (158)
387 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0011 3.8E-08 65.4 8.5 116 3-123 197-329 (338)
388 2hr2_A Hypothetical protein; a 97.1 0.0091 3.1E-07 51.3 12.7 100 22-123 10-132 (159)
389 2fbn_A 70 kDa peptidylprolyl i 97.0 0.0039 1.3E-07 55.8 10.9 96 4-100 57-164 (198)
390 3gw4_A Uncharacterized protein 97.0 0.068 2.3E-06 47.2 19.1 89 156-245 81-175 (203)
391 3rkv_A Putative peptidylprolyl 97.0 0.0061 2.1E-07 52.5 11.6 89 156-245 26-125 (162)
392 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0024 8.3E-08 63.0 10.0 36 22-57 178-213 (338)
393 1dce_A Protein (RAB geranylger 97.0 0.024 8.4E-07 60.0 18.3 179 4-196 48-240 (567)
394 4gcn_A Protein STI-1; structur 97.0 0.0062 2.1E-07 50.3 11.0 64 181-245 41-111 (127)
395 3mv2_B Coatomer subunit epsilo 97.0 0.094 3.2E-06 50.3 20.3 181 42-245 85-281 (310)
396 3e4b_A ALGK; tetratricopeptide 96.9 0.35 1.2E-05 49.4 25.9 48 73-120 194-244 (452)
397 1elr_A TPR2A-domain of HOP; HO 96.9 0.021 7.2E-07 46.2 13.6 95 185-281 7-106 (131)
398 1whv_A Poly(A)-specific ribonu 96.9 0.0033 1.1E-07 48.0 7.5 52 391-451 16-67 (100)
399 1ihg_A Cyclophilin 40; ppiase 96.9 0.0028 9.6E-08 63.4 9.4 79 21-100 271-349 (370)
400 3ma5_A Tetratricopeptide repea 96.9 0.0048 1.6E-07 48.4 8.8 64 181-245 6-69 (100)
401 2l6j_A TPR repeat-containing p 96.8 0.012 4.2E-07 46.4 11.3 69 22-91 3-71 (111)
402 1kt0_A FKBP51, 51 kDa FK506-bi 96.8 0.0046 1.6E-07 63.8 10.8 99 3-102 286-395 (457)
403 1na3_A Designed protein CTPR2; 96.8 0.025 8.4E-07 42.7 12.3 64 182-246 9-72 (91)
404 1xi4_A Clathrin heavy chain; a 96.8 0.44 1.5E-05 54.7 26.6 81 158-238 1290-1376(1630)
405 3ma5_A Tetratricopeptide repea 96.8 0.0018 6.2E-08 51.0 5.6 69 20-89 4-72 (100)
406 1wao_1 Serine/threonine protei 96.7 0.0025 8.4E-08 66.2 7.9 90 4-98 25-114 (477)
407 1wey_A Calcipressin 1; structu 96.7 0.0032 1.1E-07 49.0 6.5 74 391-470 5-84 (104)
408 3gw4_A Uncharacterized protein 96.7 0.16 5.6E-06 44.6 19.2 129 157-287 42-180 (203)
409 1ihg_A Cyclophilin 40; ppiase 96.7 0.011 3.7E-07 59.1 12.1 89 156-245 238-335 (370)
410 3rjv_A Putative SEL1 repeat pr 96.7 0.22 7.4E-06 44.9 20.1 185 3-215 4-200 (212)
411 3e4b_A ALGK; tetratricopeptide 96.6 0.078 2.7E-06 54.3 18.2 110 163-281 194-314 (452)
412 2qfc_A PLCR protein; TPR, HTH, 96.6 0.43 1.5E-05 45.2 22.2 165 106-284 88-267 (293)
413 1uw4_A UPF3X; nonsense mediate 96.5 0.02 6.9E-07 43.7 9.6 77 392-468 2-86 (91)
414 3u64_A Protein TP_0956; tetrat 96.5 0.017 5.9E-07 54.4 11.1 84 4-89 182-271 (301)
415 4g26_A Pentatricopeptide repea 96.5 0.25 8.5E-06 51.3 20.9 60 185-245 143-203 (501)
416 3ro3_A PINS homolog, G-protein 96.4 0.1 3.6E-06 43.6 15.2 125 156-282 24-157 (164)
417 2hr2_A Hypothetical protein; a 96.4 0.021 7.2E-07 49.0 10.2 89 156-245 26-130 (159)
418 3ly7_A Transcriptional activat 96.4 0.19 6.5E-06 49.3 17.9 62 182-245 277-338 (372)
419 1wwh_A Nucleoporin 35, nucleop 96.3 0.014 4.6E-07 46.9 7.9 71 390-467 23-94 (119)
420 4b4t_Q 26S proteasome regulato 96.3 0.18 6.1E-06 50.7 18.5 195 34-245 15-244 (434)
421 3ctr_A Poly(A)-specific ribonu 96.3 0.0062 2.1E-07 46.7 5.2 50 394-451 8-57 (101)
422 1wao_1 Serine/threonine protei 96.2 0.018 6E-07 59.7 10.6 83 156-246 21-103 (477)
423 4b4t_Q 26S proteasome regulato 96.2 0.27 9.2E-06 49.4 19.2 198 72-281 18-243 (434)
424 3u3w_A Transcriptional activat 96.1 0.82 2.8E-05 43.2 21.3 165 106-284 88-267 (293)
425 2l6j_A TPR repeat-containing p 96.1 0.091 3.1E-06 41.1 12.3 62 184-246 6-67 (111)
426 2kc7_A BFR218_protein; tetratr 96.1 0.049 1.7E-06 42.0 10.2 63 33-96 10-73 (99)
427 3ro3_A PINS homolog, G-protein 96.1 0.48 1.6E-05 39.3 17.5 88 156-245 64-157 (164)
428 2kc7_A BFR218_protein; tetratr 95.8 0.098 3.4E-06 40.2 10.7 56 190-246 8-64 (99)
429 4g26_A Pentatricopeptide repea 95.8 1.3 4.4E-05 45.9 22.1 162 105-280 38-201 (501)
430 3bee_A Putative YFRE protein; 95.8 0.048 1.7E-06 42.1 8.5 68 22-90 5-75 (93)
431 3bee_A Putative YFRE protein; 95.6 0.08 2.7E-06 40.8 9.2 66 181-246 5-72 (93)
432 3p3d_A Nucleoporin 53; structu 95.4 0.011 3.8E-07 48.0 3.8 79 390-469 6-98 (132)
433 1b89_A Protein (clathrin heavy 95.2 3 0.0001 42.0 21.7 98 182-280 282-414 (449)
434 3n71_A Histone lysine methyltr 94.9 1.3 4.3E-05 45.7 18.3 90 156-246 324-422 (490)
435 1b89_A Protein (clathrin heavy 94.7 0.093 3.2E-06 52.9 8.9 82 162-243 221-308 (449)
436 2l08_A Regulator of nonsense t 94.6 0.091 3.1E-06 40.4 6.6 78 391-468 9-94 (97)
437 3pq1_A Poly(A) RNA polymerase; 94.4 0.021 7.1E-07 57.8 3.5 62 391-458 53-114 (464)
438 3qww_A SET and MYND domain-con 94.3 0.28 9.6E-06 49.7 11.7 89 156-245 313-410 (433)
439 3n71_A Histone lysine methyltr 94.1 0.63 2.2E-05 48.0 14.0 126 105-245 321-463 (490)
440 3mv2_B Coatomer subunit epsilo 93.9 1.3 4.5E-05 42.4 14.7 114 162-281 114-238 (310)
441 3ly7_A Transcriptional activat 92.5 6.7 0.00023 38.4 17.6 155 45-222 182-350 (372)
442 2kn4_A Immunoglobulin G-bindin 92.4 0.13 4.3E-06 44.1 4.7 34 420-455 2-36 (158)
443 3qwp_A SET and MYND domain-con 91.0 0.79 2.7E-05 46.4 9.5 87 158-245 304-399 (429)
444 2i2y_A Fusion protein consists 90.0 0.2 7E-06 42.4 3.5 41 429-470 9-51 (150)
445 1pc2_A Mitochondria fission pr 87.4 2.7 9.1E-05 35.4 8.5 84 41-125 16-103 (152)
446 2v5f_A Prolyl 4-hydroxylase su 87.1 5.6 0.00019 30.6 10.1 70 156-226 20-89 (104)
447 1klx_A Cysteine rich protein B 86.4 12 0.00041 30.4 14.1 77 162-245 9-89 (138)
448 1klx_A Cysteine rich protein B 86.1 7.9 0.00027 31.6 11.0 57 187-245 62-125 (138)
449 2v5f_A Prolyl 4-hydroxylase su 86.1 8.4 0.00029 29.6 10.6 57 188-245 11-74 (104)
450 3qww_A SET and MYND domain-con 86.0 6.1 0.00021 39.8 12.0 88 198-286 313-414 (433)
451 1pc2_A Mitochondria fission pr 82.0 13 0.00045 31.1 10.4 49 198-246 50-100 (152)
452 3qwp_A SET and MYND domain-con 79.9 32 0.0011 34.4 14.5 92 106-212 300-400 (429)
453 3d45_A Poly(A)-specific ribonu 75.5 6.3 0.00021 40.6 7.8 52 391-451 440-491 (507)
454 2ff4_A Probable regulatory pro 74.5 22 0.00077 35.0 11.5 47 73-120 186-232 (388)
455 2pk2_A Cyclin-T1, protein TAT; 68.5 1 3.5E-05 44.2 0.0 13 401-413 227-239 (358)
456 2pk2_A Cyclin-T1, protein TAT; 68.2 1.1 3.6E-05 44.1 0.0 22 239-260 139-160 (358)
457 4gns_B Protein CSD3, chitin bi 67.7 92 0.0031 33.6 14.9 60 183-243 338-397 (754)
458 2br9_A 14-3-3E, 14-3-3 protein 65.5 78 0.0027 28.5 12.3 54 158-211 147-201 (234)
459 3iqu_A 14-3-3 protein sigma; s 64.8 80 0.0027 28.4 12.2 77 134-210 126-203 (236)
460 1o9d_A 14-3-3-like protein C; 64.5 87 0.003 28.7 12.6 54 158-211 152-206 (260)
461 3uzd_A 14-3-3 protein gamma; s 63.0 89 0.0031 28.4 11.7 54 158-211 148-202 (248)
462 2npm_A 14-3-3 domain containin 61.1 1E+02 0.0034 28.3 12.0 54 158-212 173-227 (260)
463 3ubw_A 14-3-3E, 14-3-3 protein 60.5 1E+02 0.0035 28.2 12.3 54 158-211 173-227 (261)
464 1nzn_A CGI-135 protein, fissio 58.8 69 0.0024 25.7 10.2 53 164-217 54-108 (126)
465 3efz_A 14-3-3 protein; 14-3-3, 55.4 1.3E+02 0.0043 27.7 12.4 56 157-212 168-226 (268)
466 4b4t_R RPN7, 26S proteasome re 51.3 60 0.002 32.4 9.5 62 184-246 133-197 (429)
467 1nzn_A CGI-135 protein, fissio 49.9 86 0.0029 25.2 8.3 86 40-125 18-106 (126)
468 3o48_A Mitochondria fission 1 46.0 59 0.002 26.4 6.8 48 198-245 58-106 (134)
469 4b4t_P 26S proteasome regulato 45.1 1.1E+02 0.0036 30.7 10.3 74 182-256 137-216 (445)
470 2ff4_A Probable regulatory pro 44.8 80 0.0027 30.9 9.2 58 187-245 176-233 (388)
471 3spa_A Mtrpol, DNA-directed RN 43.2 2.9E+02 0.01 31.0 13.7 90 185-277 130-224 (1134)
472 4f25_A Polyadenylate-binding p 42.8 6.6 0.00022 31.0 0.6 19 389-407 95-113 (115)
473 3spa_A Mtrpol, DNA-directed RN 41.8 3.2E+02 0.011 30.8 13.6 99 24-123 128-231 (1134)
474 4b4t_R RPN7, 26S proteasome re 39.4 52 0.0018 32.8 6.9 65 217-281 131-195 (429)
475 2w2u_A Hypothetical P60 katani 37.1 1.2E+02 0.0041 22.2 8.2 26 229-264 31-56 (83)
476 2v6y_A AAA family ATPase, P60 36.7 1.2E+02 0.0042 22.1 8.2 26 229-264 23-48 (83)
477 1y8m_A FIS1; mitochondria, unk 34.7 1.3E+02 0.0045 24.7 7.2 48 198-245 57-105 (144)
478 4e8u_A Putative uncharacterize 29.8 1.1E+02 0.0036 26.1 6.0 57 393-452 14-82 (172)
479 3txn_A 26S proteasome regulato 27.4 4.4E+02 0.015 25.7 12.3 130 156-287 34-172 (394)
480 3mkq_B Coatomer subunit alpha; 25.7 1.8E+02 0.0062 24.8 6.9 41 198-243 20-60 (177)
481 2l6f_A Focal adhesion kinase 1 30.8 15 0.00052 32.0 0.0 8 402-409 124-131 (215)
482 4a5x_A MITD1, MIT domain-conta 24.7 1.6E+02 0.0054 21.7 5.6 18 228-245 27-44 (86)
483 2o8p_A 14-3-3 domain containin 23.1 4E+02 0.014 23.7 10.0 73 134-211 123-196 (227)
484 2ex3_B Protein GP3, DNA termin 23.0 3.3E+02 0.011 22.7 7.6 75 93-175 145-219 (230)
485 2g0c_A ATP-dependent RNA helic 22.1 2.1E+02 0.0071 20.0 5.9 67 393-468 2-75 (76)
486 3ffl_A Anaphase-promoting comp 20.8 3.1E+02 0.01 23.1 7.2 60 185-245 23-91 (167)
487 1ya0_A SMG-7 transcript varian 20.4 3.4E+02 0.012 27.4 9.0 62 183-245 153-214 (497)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.96 E-value=1e-27 Score=259.20 Aligned_cols=243 Identities=15% Similarity=0.183 Sum_probs=200.5
Q ss_pred HhHHHHHHHHHHHHhcC-------CchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHcCCCCH
Q 008442 21 EKFQQYMIYLKYEQSSG-------DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR-DVYSRATKNCPWVG 92 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~-------~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~-~v~erAl~~~p~~~ 92 (565)
..+..|+.||+||+..+ ...+++.+||+||..+|+++++|++|+.|++.++. .+.++ .||+||+..||.+.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~-~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT-DSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC-CTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhCCCCH
Confidence 55789999999999764 23578899999999999999999999999988764 45575 99999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccH------------------HHHHHHHHHHHHHHHHHhhccccchhh
Q 008442 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF------------------EEYLDLFLTRIDGLRRRILFSGEVEGV 154 (565)
Q Consensus 93 ~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~------------------~~~~~~~~~~~~~~~r~~~~~~~~e~~ 154 (565)
.||+.|+.+.+. .+.++.++.+|++++...+... .....+|..+..+.+|..
T Consensus 379 ~Lwl~~a~~ee~-~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~--------- 448 (679)
T 4e6h_A 379 VLAFSLSEQYEL-NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ--------- 448 (679)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC---------
Confidence 999999995555 6789999999999997532100 123457888887776532
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChH
Q 008442 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (565)
Q Consensus 155 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~ 234 (565)
+.+.+|.+|.+|++.+ ......+|..++.+|...+++++.||.||+++|+.+|+...+|+.|++||...|+.+
T Consensus 449 -~l~~AR~vf~~A~~~~------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 449 -GLAASRKIFGKCRRLK------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp -CHHHHHHHHHHHHHTG------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred -CHHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 4567888999887752 112356889999999998867999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 235 ~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+||.+|++|+....+......||..|++||..+|+.++++++..++.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998432223467899999999999999999998877764
No 2
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.94 E-value=6.8e-25 Score=237.20 Aligned_cols=269 Identities=12% Similarity=0.102 Sum_probs=197.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC---chhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcch----
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD---PGRVQLLYERAITDFP--VSSDLWLDYTQYLDKTLKV---- 73 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~---~~~~~~lyERal~~~p--~~~~lW~~Y~~~l~~~~~~---- 73 (565)
.+|.+||.+|...|. ...+|..|+++|.+.++ .+.+..+|+|||..+| .+++||..|+.|+......
T Consensus 84 ~aR~vyEraL~~fP~----~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~ 159 (679)
T 4e6h_A 84 QVYETFDKLHDRFPL----MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGG 159 (679)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccccc
Confidence 579999999999998 78899999999999988 9999999999999994 7899999999998875532
Q ss_pred ---hhHHHHHHHHHHHcCCC----CHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhccccc----HHHHHHHH
Q 008442 74 ---GNVVRDVYSRATKNCPW----VGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFST----FEEYLDLF 134 (565)
Q Consensus 74 ---~~~~~~v~erAl~~~p~----~~~lW~~yi~~le~--------~~~~~~~~~~if~ral~~~~~~----~~~~~~~~ 134 (565)
.+.++.+|++|+..++. ++.||..|+.++.. .+..++.++.||+++|..|... |..|..+.
T Consensus 160 ~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe 239 (679)
T 4e6h_A 160 EEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWE 239 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 24578999999997654 78899999986543 1234678999999999876432 22233222
Q ss_pred HHH-------------HHHHHHHhhc--------------cc----------------------cchhhhhH--------
Q 008442 135 LTR-------------IDGLRRRILF--------------SG----------------------EVEGVLDY-------- 157 (565)
Q Consensus 135 ~~~-------------~~~~~r~~~~--------------~~----------------------~~e~~~~~-------- 157 (565)
... -+|...+..+ .. .+..++++
T Consensus 240 ~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 240 QDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 110 0011000000 00 00011111
Q ss_pred ------HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHccchHHHHHHHHHHHHHc
Q 008442 158 ------SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSAR-GVWERLLKISGAMLEAWQSYISMEIEL 230 (565)
Q Consensus 158 ------~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar-~i~e~~l~~~~~~~~lw~~yi~~e~~~ 230 (565)
.+++.+|++|+.. ++....+|..|++++...+ +.+.|+ .+|++|+..+|.+..+|+.|+.+|...
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~-------~p~~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQH-------VCFAPEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------TTTCHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 2233445555543 4556789999999999998 788886 999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcc----------cCCC---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 231 DHINEARSIYKRCYSKR----------FTGT---------GSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 231 ~~~~~aR~i~~~al~~~----------~~~~---------~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
|+++.||++|++++... .+.+ ....+|..|+.||++.|+++.++.++.++...
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998631 0110 13458999999999999999999999888654
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.92 E-value=1.4e-23 Score=220.72 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=184.1
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCC-----------------------
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVS----------------------- 56 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~----~~~~~~~~~lyERal~~~p~~----------------------- 56 (565)
.|..||.+|.... .++.+..+|..|++|+.. +++.++++.+|+|||. .|..
T Consensus 67 i~~~fe~al~~vg-~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 67 LYEVYEFTLGQFE-NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp THHHHHHHHHHST-TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHH
Confidence 5778888887642 123366889999988653 3556788899999987 3432
Q ss_pred ---------------------------HHHHHHHHHHHHHhcc---h---hhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 57 ---------------------------SDLWLDYTQYLDKTLK---V---GNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 57 ---------------------------~~lW~~Y~~~l~~~~~---~---~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
.++|..|++|...+.. + ..++..+|++||..||..+.+|+.|+.+++
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2367777777553311 1 345788999999999999999999998665
Q ss_pred HhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH---------HHHHh-hcc-------------ccchhh------
Q 008442 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDG---------LRRRI-LFS-------------GEVEGV------ 154 (565)
Q Consensus 104 ~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~---------~~r~~-~~~-------------~~~e~~------ 154 (565)
. .++.+.++.+|++|+.. +.....+ ..+..+ +..+. ... ..+-.+
T Consensus 225 ~-~~~~~~ar~i~erAi~~-P~~~~l~----~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 G-IGQKEKAKKVVERGIEM-SDGMFLS----LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp H-TTCHHHHHHHHHHHHHH-CCSSHHH----HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHHHhC-CCcHHHH----HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 4 67889999999999987 4432211 111111 11000 000 000001
Q ss_pred -hhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCh
Q 008442 155 -LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHI 233 (565)
Q Consensus 155 -~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~ 233 (565)
.+.+.+|.+|++| ........+|..++.+|..++++++.||.||+.+++.+|+...+|+.|++||...|+.
T Consensus 299 ~~~~~~AR~i~~~A--------~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 299 KRGLELFRKLFIEL--------GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHCHHHHHHHHHHH--------TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHh--------hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 1233444555544 1112245689999999998887899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHH
Q 008442 234 NEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (565)
Q Consensus 234 ~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~ 284 (565)
++||.+|+++.. ...+|..|++||..+|+.++++.+++++++.+
T Consensus 371 ~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 371 ENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 999999999942 57999999999999999999998888876655
No 4
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=2.1e-22 Score=199.61 Aligned_cols=242 Identities=21% Similarity=0.269 Sum_probs=189.1
Q ss_pred ChHhHHHHHHHHHHHHhc----CCc----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cchh-------hHH
Q 008442 19 DSEKFQQYMIYLKYEQSS----GDP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVG-------NVV 77 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~----~~~----~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~------~~~~-------~~~ 77 (565)
++.....|+.|++||++. ++. .++..+|++||..+|.++++|..|+.++... .++. +.+
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 345778999999999985 233 5788999999999999999999999988643 2343 789
Q ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q 008442 78 RDVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (565)
Q Consensus 78 ~~v~erAl~-~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~ 156 (565)
+.+|+||+. ..|.+..+|..|+.+++. .+..++++.+|++++...+.... .+|..+..++.+. .+
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~----------~~ 149 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA----------EG 149 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHH----------HC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHh----------cC
Confidence 999999999 579999999999985554 68899999999999997665332 1344444333221 13
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHH
Q 008442 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~a 236 (565)
++.++..|.+++.. .+....+|..++.++....++++.|+.+|+++++.+|++..+|..|+.++...|+++.|
T Consensus 150 ~~~A~~~~~~a~~~-------~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 150 IKSGRMIFKKARED-------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHHHTS-------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 44555666655543 33445678788888766434999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 237 RSIYKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 237 R~i~~~al~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+.+|++++... ++.+....+|..|+.||..+|+.+.+..++.+++
T Consensus 223 ~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999831 2222467899999999999999998887766653
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.2e-20 Score=201.46 Aligned_cols=241 Identities=21% Similarity=0.254 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHhcC----Cc----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cchhh-------HHHHH
Q 008442 22 KFQQYMIYLKYEQSSG----DP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVGN-------VVRDV 80 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~----~~----~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~------~~~~~-------~~~~v 80 (565)
....|..|+.|+.... +. .++..+|++||..+|.++++|..|+.++... .++.+ .++.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 4679999999998642 32 3778899999999999999999999998863 34444 79999
Q ss_pred HHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 008442 81 YSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (565)
Q Consensus 81 ~erAl~-~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~ 159 (565)
|+||+. .+|.+..+|..|+.++ ...+..++++.+|++++..++.... .+|..+..++++. .+++.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~----------~~~~~ 374 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA----------EGIKS 374 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHH-HhcCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHHHh----------cCHHH
Confidence 999998 7899999999999844 4478999999999999997765321 2455444443321 13445
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHH
Q 008442 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i 239 (565)
++.+|.+|+.. .+....++...+.++....++++.|+.+|+++++.+|++..+|+.|++++...|++++||.+
T Consensus 375 A~~~~~~Al~~-------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 375 GRMIFKKARED-------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHTC-------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhc-------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 55666665542 22334455555556544334999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHH
Q 008442 240 YKRCYSKRFTG--TGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (565)
Q Consensus 240 ~~~al~~~~~~--~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~ 284 (565)
|++++.. .+. .....+|..|+.||..+|+.+++..+..++....
T Consensus 448 ~~~al~~-~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 448 FERVLTS-GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHS-CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999974 222 1345699999999999999999988777765433
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.88 E-value=7.3e-22 Score=207.71 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=171.0
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcC--C-----chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--D-----PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~--~-----~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~ 76 (565)
+|..|+.++...+.. +.+.|..|++||+.+. . ..++..+|++||..+|+++.+|+.|+.|+...+ +.+.
T Consensus 156 ar~~y~~~~~~~~~~---s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~~~ 231 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGW---SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHTC---SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHhhc---cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHH
Confidence 466666665433211 4579999999998642 1 357889999999999999999999999987654 7788
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------------------------HhcCCHHHHHHHHH
Q 008442 77 VRDVYSRATKNCPWVGELWVRSLLSLE---------------------------------------RSRASEEEISTVFE 117 (565)
Q Consensus 77 ~~~v~erAl~~~p~~~~lW~~yi~~le---------------------------------------~~~~~~~~~~~if~ 117 (565)
++.||+||+.. |++..||..|+.+++ +..+..+.++.+|+
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999 988777776665321 11223455556666
Q ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCC
Q 008442 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK 197 (565)
Q Consensus 118 ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~ 197 (565)
+| ..+...+..|+. .+.+++. .. .+.+.+|.+|+.++..+ +....+|..|+++|...+
T Consensus 311 ~A-~~~~~~~~v~i~--~A~lE~~---~~--------~d~~~ar~ife~al~~~-------~~~~~~~~~yid~e~~~~- 368 (493)
T 2uy1_A 311 EL-GNEGVGPHVFIY--CAFIEYY---AT--------GSRATPYNIFSSGLLKH-------PDSTLLKEEFFLFLLRIG- 368 (493)
T ss_dssp HH-TTSCCCHHHHHH--HHHHHHH---HH--------CCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT-
T ss_pred Hh-hCCCCChHHHHH--HHHHHHH---HC--------CChHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcC-
Confidence 65 322222221111 1111111 00 13556777888777643 123457888999999998
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccC--CCCcHHHHHHHHHHHHHhCCHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFT--GTGSEDICHAWLRFEREYGTLEDFDH 275 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~--~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (565)
++++||.+|+++ .....+|..|++||..+|+.+.+|++|++++..... .++|..++++|++||+.+|+++++-.
T Consensus 369 ~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~ 444 (493)
T 2uy1_A 369 DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLD 444 (493)
T ss_dssp CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHH
Confidence 999999999998 346899999999999999999999999999863211 25677889999999999999887653
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.6e-20 Score=198.95 Aligned_cols=272 Identities=15% Similarity=0.190 Sum_probs=184.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH----HH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV----VR 78 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~----~~ 78 (565)
.+|..|+.+|...|. +...|..|++++...|+++.++.+|+|||..+| +.++|..|+.|+....++.+. ++
T Consensus 30 ~a~~~~e~al~~~P~----~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 30 KARKTYERLVAQFPS----SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 578999999999988 889999999999999999999999999999999 788999999988766554443 45
Q ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhccccc----HHHHHHHHHHHH-----
Q 008442 79 DVYSRATKNCP---WVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFST----FEEYLDLFLTRI----- 138 (565)
Q Consensus 79 ~v~erAl~~~p---~~~~lW~~yi~~le~~--------~~~~~~~~~if~ral~~~~~~----~~~~~~~~~~~~----- 138 (565)
.+|++|+..++ .+..+|..|+.++... .+..+.++.+|++++..|... |..|..+.....
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 69999998764 5789999999855431 456889999999999865332 112222111000
Q ss_pred --------HHHHHHh----------hcccc------------------chhhhhHHHHH--------HHHHHHHHHHHhh
Q 008442 139 --------DGLRRRI----------LFSGE------------------VEGVLDYSLIR--------ETFQRASDYLSEQ 174 (565)
Q Consensus 139 --------~~~~r~~----------~~~~~------------------~e~~~~~~~~~--------~~~~~a~~~l~~~ 174 (565)
.+...+. ..... +..+++++.-. ....+++..+...
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0000000 00000 00001110000 0011222333333
Q ss_pred hcCCchhHHHHHHHHHHHHH-------cCCChH-------HHHHHHHHHHH-HccchHHHHHHHHHHHHHcCChHHHHHH
Q 008442 175 MKNTDGLLRLYAYWAHLEQS-------MGKDMV-------SARGVWERLLK-ISGAMLEAWQSYISMEIELDHINEARSI 239 (565)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~-------~~~~~~-------~ar~i~e~~l~-~~~~~~~lw~~yi~~e~~~~~~~~aR~i 239 (565)
+...+....+|..|+.++.. .| +++ .|+.+|++++. .+|++..+|..|+.++...|+++.|+.+
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33334456788888888765 45 765 78888888887 5788888888888888888888888888
Q ss_pred HHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 240 YKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 240 ~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
|++++.. +...+..+|..|..|+...|+.+.++.++.+++.
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888863 3333446888888888888888888877777753
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=147.75 Aligned_cols=83 Identities=22% Similarity=0.467 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..++++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.++++|.+|+. +||..|+|++|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999999899999999999999999999997 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
|+|.
T Consensus 96 AkPS 99 (99)
T 4fxv_A 96 ARPS 99 (99)
T ss_dssp CCBC
T ss_pred eeCC
Confidence 9873
No 9
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.2e-17 Score=165.14 Aligned_cols=215 Identities=16% Similarity=0.195 Sum_probs=175.2
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh-------cCCc-------hhHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS-------SGDP-------GRVQLLYERAIT-DFPVSSDLWLDYTQYLD 68 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~-------~~~~-------~~~~~lyERal~-~~p~~~~lW~~Y~~~l~ 68 (565)
+...|+.+|..+|. +..+|..|+.++.. .|+. +.++.+|+|||. ..|.+..+|..|+.++.
T Consensus 35 a~~~~~~al~~~p~----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 35 VMFAYEQCLLVLGH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45799999999988 89999999999864 4776 899999999999 69999999999999877
Q ss_pred HhcchhhHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhc
Q 008442 69 KTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILF 147 (565)
Q Consensus 69 ~~~~~~~~~~~v~erAl~~~p~~~~-lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~ 147 (565)
..+ ..+.++.+|++|+...|.... +|..|+.++ ...+.+++++.+|++|+...+..+..++...... + . .
T Consensus 111 ~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~--~---~--~ 181 (308)
T 2ond_A 111 SRM-KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA-RRAEGIKSGRMIFKKAREDARTRHHVYVTAALME--Y---Y--C 181 (308)
T ss_dssp HTT-CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH--H---H--T
T ss_pred hcC-CHHHHHHHHHHHHhccccCccHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--H---H--H
Confidence 655 778899999999998888776 999999855 4467899999999999987665444333221110 0 0 0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---cc-chHHHHHHH
Q 008442 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG-AMLEAWQSY 223 (565)
Q Consensus 148 ~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~-~~~~lw~~y 223 (565)
. .++..++..|++++... +....+|..|+.++...+ ++++|+.+|++++.. .| ....+|..|
T Consensus 182 ~------~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 182 S------KDKSVAFKIFELGLKKY-------GDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp S------CCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred c------CCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 0 14566778888877754 234678999999999988 999999999999995 34 468999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 008442 224 ISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 224 i~~e~~~~~~~~aR~i~~~al~ 245 (565)
+.|+...|+.+.|+.++++++.
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999987
No 10
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.2e-18 Score=153.72 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||.++++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999998889999999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=141.69 Aligned_cols=81 Identities=27% Similarity=0.465 Sum_probs=75.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c-CCcccCCeEEEEeecC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K-NKQMFLGKKLSIARSN 468 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~-~~~~~~g~~l~v~~a~ 468 (565)
++|||+|||+++++++|+++|++|| .|.+|+|+.++.+|.++|||||+|.++++|.+|+. + ++..++|++|.|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999999999899999999999999999999997 5 5667999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
|++.
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=136.44 Aligned_cols=84 Identities=23% Similarity=0.491 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||.++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+.+++..|.|++|.|.++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
++..
T Consensus 88 ~~~~ 91 (99)
T 2dgs_A 88 PRDS 91 (99)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8754
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=139.78 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
+.++|||+|||+++++++|+++|++||.|.+|.|+.++.||+++|||||+|.+.++|.+|+. ||+..|+|++|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999899999999999999999999998 89999999999999986
Q ss_pred CC
Q 008442 469 PK 470 (565)
Q Consensus 469 ~~ 470 (565)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=144.62 Aligned_cols=85 Identities=25% Similarity=0.340 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||.++++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|+. +++..|.|++|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4557899999999999999999999999999999999998889999999999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.+...
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 988754
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=137.94 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCc----ccCCeEEE
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGG--VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQ----MFLGKKLS 463 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~----~~~g~~l~ 463 (565)
=.||||+|||+++|+++|+++|++||. |.+|+++.|+.+|++||||||+|.++++|++|+. +|+. .|+|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 369999999999999999999999995 6799999999899999999999999999999998 7775 48999999
Q ss_pred EeecCC
Q 008442 464 IARSNP 469 (565)
Q Consensus 464 v~~a~~ 469 (565)
|.+|+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999875
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=135.31 Aligned_cols=85 Identities=31% Similarity=0.486 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||+++++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999998899999999999999999999996 8999999999999999
Q ss_pred CCCCCC
Q 008442 468 NPKQRK 473 (565)
Q Consensus 468 ~~~~~~ 473 (565)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887553
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=135.64 Aligned_cols=86 Identities=27% Similarity=0.409 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||.++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567999999999999999999999999999999999998899999999999999999999998 899999999999999
Q ss_pred cCCCCCC
Q 008442 467 SNPKQRK 473 (565)
Q Consensus 467 a~~~~~~ 473 (565)
+.++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887543
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=133.34 Aligned_cols=84 Identities=20% Similarity=0.421 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. +++..+.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 346899999999999999999999999999999999998889999999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87644
No 19
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.2e-17 Score=130.45 Aligned_cols=80 Identities=26% Similarity=0.396 Sum_probs=76.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
++|||+|||+++++++|+.+|+.||.|.++.++.++.+|.++|||||+|.++++|..|+. +++..++|++|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999998899999999999999999999998 8999999999999999886
Q ss_pred C
Q 008442 471 Q 471 (565)
Q Consensus 471 ~ 471 (565)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.2e-17 Score=134.63 Aligned_cols=84 Identities=23% Similarity=0.449 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
....++|||+|||+++++++|+.+|+.|| |.+|+|+.++.+|+++|||||+|.+.++|..|+.+++..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 99999999988899999999999999999999988999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88654
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.1e-18 Score=136.83 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
.+|||+|||+++++++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|.+|+. +||..++|++|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999998899999999999999999999997 89999999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
|+..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8754
No 22
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-17 Score=136.69 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|+. +++ .|.|++|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999998 677 8999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.+...
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9987644
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=133.61 Aligned_cols=85 Identities=24% Similarity=0.427 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+++++++|+.+|+.||.|.+++++.++ +|.++|||||+|.+.++|..|+. +++..+.|++|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999997 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.|+..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9988754
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=4.3e-17 Score=135.84 Aligned_cols=87 Identities=23% Similarity=0.420 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||.++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|+.|+. +++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999997 89999999999999
Q ss_pred ecCCCCCC
Q 008442 466 RSNPKQRK 473 (565)
Q Consensus 466 ~a~~~~~~ 473 (565)
++.++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99887553
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=135.31 Aligned_cols=85 Identities=19% Similarity=0.429 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 988754
No 26
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=136.06 Aligned_cols=85 Identities=26% Similarity=0.393 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||+++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 457899999999999999999999999999999999998899999999999999999999997 8999999999999999
Q ss_pred CCCCCC
Q 008442 468 NPKQRK 473 (565)
Q Consensus 468 ~~~~~~ 473 (565)
.++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887654
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.7e-17 Score=130.81 Aligned_cols=80 Identities=21% Similarity=0.432 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|+.+++..|+|++|.|..|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999988999999999999999999999998888999999999875
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=136.95 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||.++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|+.|+. +++..|.|++|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446899999999999999999999999999999999998 99999999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87643
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=135.88 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. +++..|+|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999998889999999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987654
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=134.09 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSI-RILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
.+.++|||+|||+++++++|+.+|+.||.|..+ +|+.++.+|.++|||||+|.++++|..|+. +++..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999997899999999999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 988754
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.5e-17 Score=137.26 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+++++++|+++|+.||.|.+|+|+.++.+|.++|||||+|.+.++|..|+. +|+..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999997 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9988755
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=131.58 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. +++..++|++|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 346899999999999999999999999999999999998899999999999999999999998 8999999999999999
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 33
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=136.54 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...++++|||+|||.++++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999998 89999999999999
Q ss_pred ecCCCC
Q 008442 466 RSNPKQ 471 (565)
Q Consensus 466 ~a~~~~ 471 (565)
++.+++
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997764
No 34
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=9.8e-18 Score=142.27 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+++++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+. |++..|.|++|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999997 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9987644
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=135.43 Aligned_cols=86 Identities=20% Similarity=0.369 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cC------CcccCC
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KN------KQMFLG 459 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~------~~~~~g 459 (565)
...+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|.++|||||+|.+.++|..|+. ++ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999998899999999999999999999998 78 999999
Q ss_pred eEEEEeecCCCCC
Q 008442 460 KKLSIARSNPKQR 472 (565)
Q Consensus 460 ~~l~v~~a~~~~~ 472 (565)
++|.|.++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999988754
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=133.36 Aligned_cols=85 Identities=26% Similarity=0.377 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++. ++.++|||||+|.+.++|..|+. |++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999998875 56899999999999999999998 8999999999999
Q ss_pred eecCCCCCC
Q 008442 465 ARSNPKQRK 473 (565)
Q Consensus 465 ~~a~~~~~~ 473 (565)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999887543
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=133.92 Aligned_cols=83 Identities=24% Similarity=0.474 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+.+|+.|| |.+|.|+.++.+ |.++|||||+|.+.++|.+|+.+++..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 999999999877 99999999999999999999988999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88754
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=134.58 Aligned_cols=85 Identities=21% Similarity=0.427 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||+++++++|+++|+.||.|..+.|+.++.++.++|||||+|.++++|..|+. +|+..|.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999996 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=134.25 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcc-cCCeEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSD-VGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM-FLGKKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~-~~g~~l~v 464 (565)
....++|||+|||+++++++|+.+|+. ||.|.+|.|+.++ +|.++|||||+|.+.++|..|+. +++.. |+|++|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 355789999999999999999999999 9999999999998 99999999999999999999998 89999 99999999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99987654
No 40
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=134.89 Aligned_cols=86 Identities=23% Similarity=0.454 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 386 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
+.....++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. +++..|+|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998899999999999999999999997 8999999999999
Q ss_pred eecCCCC
Q 008442 465 ARSNPKQ 471 (565)
Q Consensus 465 ~~a~~~~ 471 (565)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998763
No 41
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=6.5e-17 Score=132.40 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC---eEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG---KKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g---~~l~v 464 (565)
...++|||+|||+++++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..|+. +++..+.| ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999998 89999999999999999999998 89999988 99999
Q ss_pred eecCCCCCC
Q 008442 465 ARSNPKQRK 473 (565)
Q Consensus 465 ~~a~~~~~~ 473 (565)
.++.++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887654
No 42
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=4.1e-17 Score=167.24 Aligned_cols=85 Identities=22% Similarity=0.396 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+.+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ||+..|.|++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999998899999999999999999999997 8999999999999999
Q ss_pred CCCCCC
Q 008442 468 NPKQRK 473 (565)
Q Consensus 468 ~~~~~~ 473 (565)
.+....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876553
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=131.80 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||+++++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999997 89999999999999999999998 899999999999999
Q ss_pred cCCCCCC
Q 008442 467 SNPKQRK 473 (565)
Q Consensus 467 a~~~~~~ 473 (565)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9887553
No 44
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=1.1e-17 Score=156.53 Aligned_cols=81 Identities=19% Similarity=0.328 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|.+||. ||+..|.|++|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 99999999998899999999999999999999998 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 45
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.6e-17 Score=135.00 Aligned_cols=85 Identities=21% Similarity=0.450 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc---CCeEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF---LGKKLS 463 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~---~g~~l~ 463 (565)
..+.++|||+|||.++++++|+.+|+.||.|.+|+|+.++.+|.++|||||+|.+.++|..|+. +++..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4567899999999999999999999999999999999998889999999999999999999998 899887 899999
Q ss_pred EeecCCCCC
Q 008442 464 IARSNPKQR 472 (565)
Q Consensus 464 v~~a~~~~~ 472 (565)
|.++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999988654
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=135.65 Aligned_cols=86 Identities=33% Similarity=0.432 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVS--------SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF 457 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~ 457 (565)
...+.++|||+|||+++++++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|+. +++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999999 69999998899999999999999999999998 899999
Q ss_pred CCeEEEEeecCCCCC
Q 008442 458 LGKKLSIARSNPKQR 472 (565)
Q Consensus 458 ~g~~l~v~~a~~~~~ 472 (565)
.|++|.|.++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999988654
No 47
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=135.12 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||+++++++|+++|++||.|.+|+|+.++. |.++|||||+|.++++|..|+.+++..++|++|.|..+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568999999999999999999999999999999999985 999999999999999999999999999999999998864
Q ss_pred C
Q 008442 469 P 469 (565)
Q Consensus 469 ~ 469 (565)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.9e-17 Score=136.90 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||.++++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. +++..|+|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987654
No 49
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=132.57 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
....++|||+|||+++++++|+++|++||. .+|+|+.++ +|+++|||||+|.++++|++||.+++..|+|+.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 355689999999999999999999999995 599999998 999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.8e-17 Score=133.21 Aligned_cols=85 Identities=22% Similarity=0.454 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHH-c-CCcccCCeEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD-KFTGKSRGLAYVDFIDDEHLAAAVA-K-NKQMFLGKKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~a~~-~-~~~~~~g~~l~v 464 (565)
....++|||+|||+++++++|+.+|+.||.|..|+|+.+ +.+|.++|||||+|.+.++|.+|+. + ++..|.|++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999998 7799999999999999999999998 8 999999999999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99988754
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=3e-17 Score=131.95 Aligned_cols=82 Identities=28% Similarity=0.387 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||.++++++|+.+|+.||.|.+++++.++.+|.++|||||+|.+.++|..|+. ++|..++|++|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999998889999999999999999999997 899999999999999988
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=4e-17 Score=129.31 Aligned_cols=81 Identities=30% Similarity=0.644 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+.+++..+.|++|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 35799999999999999999999999999999999998899999999999999999999998899999999999999987
Q ss_pred C
Q 008442 470 K 470 (565)
Q Consensus 470 ~ 470 (565)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=2.9e-17 Score=128.87 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|..|+. +++..++|++|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999998899999999999999999999997 8999999999999987
Q ss_pred C
Q 008442 468 N 468 (565)
Q Consensus 468 ~ 468 (565)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=131.96 Aligned_cols=85 Identities=28% Similarity=0.416 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||.++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 79999999999999999999998 899999999999999
Q ss_pred cCCCCCC
Q 008442 467 SNPKQRK 473 (565)
Q Consensus 467 a~~~~~~ 473 (565)
+.+...+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9765443
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=132.13 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeE----E
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS-SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKK----L 462 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~----l 462 (565)
...++|||+|||+++++++|+.+|++||.|. +++++.++.+|.++|||||+|.+.++|+.|+. +|+..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 99999998899999999999999999999998 8999999999 9
Q ss_pred EEeecCCCC
Q 008442 463 SIARSNPKQ 471 (565)
Q Consensus 463 ~v~~a~~~~ 471 (565)
.|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=5.2e-18 Score=137.29 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC-e
Q 008442 389 TDECTAFLSNINL------KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG-K 460 (565)
Q Consensus 389 ~~~~~l~V~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g-~ 460 (565)
..+++|||+|||+ ++++++|+++|++||.|.+|+|+.++.||+++|||||+|.++++|.+|+. +||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999889999999999999999999997 89999999 9
Q ss_pred EEEEeecCCC
Q 008442 461 KLSIARSNPK 470 (565)
Q Consensus 461 ~l~v~~a~~~ 470 (565)
+|.|.++.|.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998764
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=3.6e-17 Score=136.05 Aligned_cols=80 Identities=21% Similarity=0.391 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
..+|||+|||+++++++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|+.||. |++..|+|++|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 5589999999999999999997 899999999999999987
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=131.00 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL 458 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~ 458 (565)
....++|||+|||.++++++|+++|+.||.|.. ++++.++.+|+++|||||+|.+.++|+.|+. +++..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 455799999999999999999999999999999 9999998899999999999999999999998 8999999
Q ss_pred CeEEEEeecC
Q 008442 459 GKKLSIARSN 468 (565)
Q Consensus 459 g~~l~v~~a~ 468 (565)
|++|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=130.18 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||+++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+. ++..|+|++|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 3556899999999999999999999999999999999998889999999999999999999998 577899999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 88654
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=133.51 Aligned_cols=86 Identities=27% Similarity=0.477 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
...+.++|||+|||+++++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+..++..|+|++|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999998899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987654
No 61
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=5.2e-17 Score=133.57 Aligned_cols=85 Identities=24% Similarity=0.509 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|.++|||||+|.+.++|..|+...+..|+|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35678999999999999999999999999999999999988899999999999999999999996668999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=129.30 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK-SRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..++|||+|||.++++++|+.+|++||.|.++.++.++.++. ++|||||+|.+.++|.+|+. +|+..++|++|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999876666 89999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.|+..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=129.48 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+. +++..++|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999998889999999999999999999998 899999999999999
Q ss_pred cCC
Q 008442 467 SNP 469 (565)
Q Consensus 467 a~~ 469 (565)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=135.54 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||+++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..++..|+|++|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999888999999999999999999999889999999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8754
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.2e-17 Score=128.89 Aligned_cols=81 Identities=28% Similarity=0.482 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3457899999999999999999999999999999999998889999999999999999999997 899999999999998
Q ss_pred cC
Q 008442 467 SN 468 (565)
Q Consensus 467 a~ 468 (565)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-17 Score=129.53 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEE
Q 008442 388 FTDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKL 462 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l 462 (565)
..+.++|||+|||+++++++|+ .+|++||.|.+|+|+.++.+ +|||||+|.+.++|..|+. +|+..|+|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3567899999999999999999 99999999999999998744 8999999999999999998 89999999999
Q ss_pred EEeecCCCCC
Q 008442 463 SIARSNPKQR 472 (565)
Q Consensus 463 ~v~~a~~~~~ 472 (565)
.|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 67
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=128.51 Aligned_cols=84 Identities=19% Similarity=0.369 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||+++++++|+++|+.||.|.+|.|+.++ . .++|||||+|.+.++|..|+. +++..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-R-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-T-TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-C-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999885 3 389999999999999999998 899999999999999
Q ss_pred cCCCCCC
Q 008442 467 SNPKQRK 473 (565)
Q Consensus 467 a~~~~~~ 473 (565)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887553
No 68
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.2e-17 Score=126.10 Aligned_cols=75 Identities=20% Similarity=0.442 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
+|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.++++|++|+.+++..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999988999999999999999999999999999999999999875
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=126.35 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
....++|||+|||+++++++|+++|+.| .|.+++|+.+ .+|+++|||||+|.+.++|..|+.+++..|+|++|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3557899999999999999999999999 8999999999 5999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87643
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=6.7e-17 Score=137.02 Aligned_cols=84 Identities=26% Similarity=0.388 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++|+. +++..|+|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999998 899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.+++
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98764
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=141.75 Aligned_cols=81 Identities=14% Similarity=0.311 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
+.++|||+|||+++++++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||. |||..|+|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999899999999999999999999998 799999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9765
No 72
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-16 Score=128.41 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||+++++++|+.+|+.||.|.+|.|+.++ +.++|||||+|.+.++|..|+. +++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34567999999999999999999999999999999999985 3378999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9988654
No 73
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=129.86 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+++|++||.|.. |+|+.+ .+|+++|||||+|.++++|..||..++..|+|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 356789999999999999999999999999987 899888 599999999999999999999998899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.4e-16 Score=126.92 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||.++++++|+.+|++||.|..+.++.+ +|.++|||||+|.+.++|..|+. +++..++|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999984 89999999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87644
No 75
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=1.1e-16 Score=135.28 Aligned_cols=83 Identities=30% Similarity=0.622 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
+.++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+.+++..|+|++|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 45899999999999999999999999999999999998899999999999999999999998899999999999999987
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 76
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=132.45 Aligned_cols=83 Identities=23% Similarity=0.458 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK-FTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+.+|+.|| |.+++|+.++ .+|+++|||||+|.+.++|..|+.+++..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 35579999999999999999999999999 9999999987 589999999999999999999998899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98763
No 77
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=138.56 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCc----ccCC
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSS--IRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQ----MFLG 459 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~----~~~g 459 (565)
.....++|||+|||+++++++|+++|++||.|.. |+|+.++.+|+++|||||+|.+. +|..|+. +++. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999998999999999999999 9999998 8999 9999
Q ss_pred eEEEEeecCCCCC
Q 008442 460 KKLSIARSNPKQR 472 (565)
Q Consensus 460 ~~l~v~~a~~~~~ 472 (565)
++|.|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988644
No 78
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.5e-16 Score=133.26 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 386 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|..|+. +|+..|+|++|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344667999999999999999999999999999999999998899999999999999999999998 8999999999999
Q ss_pred eecC
Q 008442 465 ARSN 468 (565)
Q Consensus 465 ~~a~ 468 (565)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9864
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=127.92 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+.+++++|+++|++||.|.+|.|+.++ +|.++|||||+|.++++|.+|+. +++..+.|++|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456899999999999999999999999999999999998 59999999999999999999998 899999999999998
Q ss_pred cCC
Q 008442 467 SNP 469 (565)
Q Consensus 467 a~~ 469 (565)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 80
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-17 Score=137.52 Aligned_cols=83 Identities=17% Similarity=0.297 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGV-SSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||+++++++|+++|+.||.| ..|+|+.++ +|+++|||||+|.+.++|..||.+++..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3557899999999999999999999999999 899999998 99999999999999999999998899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=128.65 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cC--CcccCCeEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KN--KQMFLGKKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~--~~~~~g~~l~v 464 (565)
..+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|..|+. ++ +..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999864 5999999999999999998 65 47899999999
Q ss_pred eecCCCCCC
Q 008442 465 ARSNPKQRK 473 (565)
Q Consensus 465 ~~a~~~~~~ 473 (565)
.++.++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 82
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5e-17 Score=132.87 Aligned_cols=84 Identities=31% Similarity=0.534 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 345899999999999999999999999999999999998899999999999999999999997 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 88654
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=130.41 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHH-cCCcccCCe
Q 008442 388 FTDECTAFLSNINLKATYEDLR---RFFSDVGGVSSIRILHDKFTG---KSRGLAYVDFIDDEHLAAAVA-KNKQMFLGK 460 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~ 460 (565)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.++.++ .++|||||+|.++++|++|+. ||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4557899999999999999999 999999999999999887644 566999999999999999998 899999999
Q ss_pred EEEEeecCCCCC
Q 008442 461 KLSIARSNPKQR 472 (565)
Q Consensus 461 ~l~v~~a~~~~~ 472 (565)
+|.|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988753
No 84
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.6e-17 Score=131.69 Aligned_cols=81 Identities=19% Similarity=0.435 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||+++++++|+++|+.| .|.+|+|+.++ +|+++|||||+|.++++|++||.+++..|+|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 89999999997 699999999999999999999999999999999999888
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.+.
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 85
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=130.05 Aligned_cols=85 Identities=18% Similarity=0.302 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHH-cC--CcccCCeEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRIL-HDKFTGKSRGLAYVDFIDDEHLAAAVA-KN--KQMFLGKKLS 463 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~a~~-~~--~~~~~g~~l~ 463 (565)
.+.++|||+|||+++++++|+.+|..||. |.++.++ .++.+|.++|||||+|.+.++|..|+. ++ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 788889999999999999999999998 75 5899999999
Q ss_pred EeecCCCCCC
Q 008442 464 IARSNPKQRK 473 (565)
Q Consensus 464 v~~a~~~~~~ 473 (565)
|.++.|+...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887653
No 86
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=134.54 Aligned_cols=85 Identities=29% Similarity=0.500 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||.++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+.+++..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34568999999999999999999999999999999999998899999999999999999999988999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 77543
No 87
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=128.58 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+.+|..||.|..+.++.++.+|+++|||||+|.+.++|++|+. +++..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345899999999999999999999999999988888888899999999999999999999996 8999999999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.++
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 88
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=126.80 Aligned_cols=82 Identities=26% Similarity=0.389 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+++++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|+.|+. +++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567999999999999999999999999976 56666 489999999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988744
No 89
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-16 Score=128.07 Aligned_cols=83 Identities=17% Similarity=0.335 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||+++++++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|..|+. +++..|.|++|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999965 45689999999999999999996 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987643
No 90
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2.9e-16 Score=128.96 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+.+++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|.+|+. |++..|.|++|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567899999999999999999999999999999999998 99999999999999999999998 899999999999998
Q ss_pred cC
Q 008442 467 SN 468 (565)
Q Consensus 467 a~ 468 (565)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=2.6e-16 Score=139.18 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|.++|||||+|.+.++|..|+. ||+..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999998899999999999999999999997 8999999999999999
Q ss_pred CCCCCC
Q 008442 468 NPKQRK 473 (565)
Q Consensus 468 ~~~~~~ 473 (565)
.++..+
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 886543
No 92
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=3.5e-17 Score=139.65 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||+++++++|+++|++|| |.+|+|+.++ +|+++|||||+|.++++|.+||.+++..|+|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 7799999998 5999999999999999999999889999999999999987
Q ss_pred CCC
Q 008442 469 PKQ 471 (565)
Q Consensus 469 ~~~ 471 (565)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 93
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-18 Score=141.63 Aligned_cols=84 Identities=25% Similarity=0.426 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
.+.++|||+|||.++++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..|+. +++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 9999998789999999999999999999998 89999999
Q ss_pred eEEEEeecCCCCC
Q 008442 460 KKLSIARSNPKQR 472 (565)
Q Consensus 460 ~~l~v~~a~~~~~ 472 (565)
++|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987643
No 94
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=7.7e-16 Score=125.36 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|..|+. |++..|.|++|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999986 3699999999999999998 8999999999999999
Q ss_pred CCCCCC
Q 008442 468 NPKQRK 473 (565)
Q Consensus 468 ~~~~~~ 473 (565)
.++..+
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 887654
No 95
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-17 Score=126.89 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+.++|||+|||+++++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. +|+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356899999999999999999999999999999999998899999999999999999999998 8999999998877654
No 96
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.3e-16 Score=135.66 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v 464 (565)
..+.++|||+|||+++++++|+++|++||. |.+|+|+.++. |+++|||||+|.++++|++||.+++..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 356789999999999999999999999999 89999999984 99999999999999999999999999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
..+.+.
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998654
No 97
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.9e-16 Score=126.11 Aligned_cols=78 Identities=19% Similarity=0.382 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC-----eE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG-----KK 461 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g-----~~ 461 (565)
....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|+.||. ||+..|.| ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356799999999999999999999999999999999875 899999999999999998 89999999 99
Q ss_pred EEEeecCCCCC
Q 008442 462 LSIARSNPKQR 472 (565)
Q Consensus 462 l~v~~a~~~~~ 472 (565)
|.|.++.++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999988644
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.8e-16 Score=132.25 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v 464 (565)
..+.++|||+|||+++++++|+++|+.||. |..|+|+.++ .|+++|||||+|.+.++|.+||.+++..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999998 8999999998 599999999999999999999999999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
..+.+.
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 99
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=1.3e-16 Score=136.58 Aligned_cols=87 Identities=23% Similarity=0.415 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|+.|+. +++..|.|++|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998 89999999999999
Q ss_pred ecCCCCCC
Q 008442 466 RSNPKQRK 473 (565)
Q Consensus 466 ~a~~~~~~ 473 (565)
++.+...+
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=128.72 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCe
Q 008442 388 FTDECTAFLSNINLKA------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGK 460 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~ 460 (565)
....++|||+|||+.+ ++++|+.+|++||.|.+|.|+. .+|+++|||||+|.+.++|..|+. +||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456899999999999 7899999999999999999983 589999999999999999999998 899999998
Q ss_pred -EEEEeecCCC
Q 008442 461 -KLSIARSNPK 470 (565)
Q Consensus 461 -~l~v~~a~~~ 470 (565)
+|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-17 Score=123.60 Aligned_cols=75 Identities=25% Similarity=0.538 Sum_probs=71.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.++++|..|+. ++ ..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999998 57 8999999999876
No 102
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=5.1e-17 Score=124.10 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 393 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
+|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.++++|..|+.+++..++|++|.|..|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988899999999999999999999998899999999999875
No 103
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=5.1e-16 Score=131.13 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||.++++++|+.+|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..|+. +++..|+|++|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44667899999999999999999999999999999999998 99999999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
+|.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987654
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7e-16 Score=128.25 Aligned_cols=82 Identities=27% Similarity=0.408 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc--------C
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF--------L 458 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~--------~ 458 (565)
..+.++|||+|||+++++++|+.+|+.||.|.+++|+.++ +|.++|||||+|.+.++|..|+. +|+..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999998 99999999999999999999998 899998 5
Q ss_pred CeEEEEeecCCC
Q 008442 459 GKKLSIARSNPK 470 (565)
Q Consensus 459 g~~l~v~~a~~~ 470 (565)
|++|.|.++.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999875
No 105
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=3.4e-16 Score=139.21 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. |++..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9977654
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=127.67 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cC--CcccCCeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KN--KQMFLGKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~--~~~~~g~~l~v~ 465 (565)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|.+|+. ++ +..|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45689999999999999999999999999999999865 6999999999999999998 65 468999999999
Q ss_pred ecCCCCCCC
Q 008442 466 RSNPKQRKD 474 (565)
Q Consensus 466 ~a~~~~~~~ 474 (565)
++.++..+.
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998776543
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=122.41 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c--CCcccCCeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K--NKQMFLGKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~--~~~~~~g~~l~v~ 465 (565)
.+.++|||+|||+++++++|+.+|++||.|.+|.++.+ ||||||+|.+.++|..|+. + ++..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45689999999999999999999999999999998754 6999999999999999997 5 5678999999999
Q ss_pred ecCCCCCC
Q 008442 466 RSNPKQRK 473 (565)
Q Consensus 466 ~a~~~~~~ 473 (565)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99876553
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=124.43 Aligned_cols=82 Identities=28% Similarity=0.409 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|..|+. |++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45679999999999999999999999774 67788887799999999999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 988644
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=4.9e-17 Score=129.04 Aligned_cols=80 Identities=25% Similarity=0.578 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.+ |..|+. +++..++|++|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 999998 8999999999999999876
Q ss_pred CC
Q 008442 471 QR 472 (565)
Q Consensus 471 ~~ 472 (565)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 110
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.7e-16 Score=127.31 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.++++|++|+. +|+..|.|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999999898888899999999999999999999998 89999999999999876
Q ss_pred C
Q 008442 469 P 469 (565)
Q Consensus 469 ~ 469 (565)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 111
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=128.31 Aligned_cols=82 Identities=20% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||.++++++|+.+|+.||.|.++.++.++ +.++|||||+|.+.++|..|+. +++..++|++|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999885 4589999999999999999998 89999999999999
Q ss_pred ecCCC
Q 008442 466 RSNPK 470 (565)
Q Consensus 466 ~a~~~ 470 (565)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.6e-16 Score=119.95 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
...|||+||++.+++++|+++|.+||+|.+++++. ++|||||+|.++++|..|+. ||+..+.|++|.|..|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 57899999999999999999999999999999865 57999999999999999998 89999999999999883
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=123.17 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcc--cCCeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM--FLGKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~--~~g~~l~v~ 465 (565)
.++++|||+|||+++++++|+.+|++||.|.++.++. +||||||+|.+.++|.+|+. +++.. +.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3468999999999999999999999999999999875 36899999999999999998 77664 889999999
Q ss_pred ecCCCC
Q 008442 466 RSNPKQ 471 (565)
Q Consensus 466 ~a~~~~ 471 (565)
+|+++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998753
No 114
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=124.28 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCC--cccCCeEEEE
Q 008442 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNK--QMFLGKKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~--~~~~g~~l~v 464 (565)
.+.++|||+|||+ ++++++|+.+|++||.|.+|.|+.+ +|||||+|.+.++|..|+. +++ ..|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999865 3899999999999999997 764 4599999999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
.+|.+.+.
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=130.19 Aligned_cols=81 Identities=26% Similarity=0.304 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 389 TDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
..+++|||+|||+.+++++|+ .+|++||.|.+|.+.. +|+++|||||+|.+.++|..|+. |||..|.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 446899999999999999876 6999999999988753 78899999999999999999997 899999999999
Q ss_pred EeecCCCCC
Q 008442 464 IARSNPKQR 472 (565)
Q Consensus 464 v~~a~~~~~ 472 (565)
|.++.++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987643
No 116
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=133.52 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||+++++++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|..||.+|+..|+|++|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34668999999999999999999999999998865566556999999999999999999999999999999999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.++
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=120.58 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||.++++++|+.+|++||.|.++.++ +|||||+|.+.++|..|+. +++..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999986 5899999999999999997 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88754
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=122.65 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCe-EE
Q 008442 391 ECTAFLSNINLKA------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGK-KL 462 (565)
Q Consensus 391 ~~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~-~l 462 (565)
+++|||+|||..+ ++++|+.+|++||.|.++.++. .+|+++|||||+|.+.++|..|+. +||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3799999999999 6799999999999999999883 489999999999999999999998 899999999 88
Q ss_pred EEe
Q 008442 463 SIA 465 (565)
Q Consensus 463 ~v~ 465 (565)
.|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 119
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=130.52 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEE
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v 464 (565)
..+.++|||+|||+++++++|+.+|+.||. |.+|+|+.++. |+++|||||+|.+.++|..||.+++..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 356789999999999999999999999988 89999999984 99999999999999999999999999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
..+.+.
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998764
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=130.65 Aligned_cols=85 Identities=25% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||.++++++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|..|+. |++..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 457899999999999999999999999998433222222278999999999999999999998 8999999999999999
Q ss_pred CCCCCC
Q 008442 468 NPKQRK 473 (565)
Q Consensus 468 ~~~~~~ 473 (565)
.++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 887553
No 121
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-17 Score=131.42 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||+++++++|+.+|+.||.|.. .++.++.+|.++|||||+|.+.++|.+|+.+++..|.|++|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45689999999999999999999999999887 66666668999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=5e-16 Score=127.05 Aligned_cols=78 Identities=15% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
...++|||+|||+++++++|+++|+.|| .|..+.++. +.++|||||+|.+.++|+.|+. +|+..|+|++|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3468999999999999999999999999 899998853 3578999999999999999997 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+.++
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 123
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=131.32 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGV----SSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v 464 (565)
.+.++|||+|||+++++++|+++|++||.| ..|+|+.++ +|+++|||||+|.++++|.+||..++..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999875 689999986 999999999999999999999998999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=122.46 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCC--cccCCeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNK--QMFLGKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~--~~~~g~~l~v~ 465 (565)
...++|||+|||+++++++|+.+|++||.|.+|.++.+ ||||||+|.+.++|..|+. +++ ..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 44689999999999999999999999999999998753 6899999999999999997 654 46999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987654
No 125
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=3.7e-16 Score=130.61 Aligned_cols=80 Identities=24% Similarity=0.379 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS--SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
...++|||+|||+++++++|+++|++| .|. +|+|+.++ .|+++|||||+|.++++|.+||.+++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~-~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS-SSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456899999999999999999999999 577 99999998 49999999999999999999999888999999999988
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 126
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=131.75 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||+++++++|+.+|++||.|..++++.++.+|.++|||||+|.+.++|.+|+. +++..|.|++|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999997 89999999999998
Q ss_pred ec
Q 008442 466 RS 467 (565)
Q Consensus 466 ~a 467 (565)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 127
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=3.4e-16 Score=127.29 Aligned_cols=82 Identities=30% Similarity=0.562 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||+++++++|+.+|+.||.|.+++++.++ +|.++|||||+|.+.++|..|+. ++..++|++|.|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 346899999999999999999999999999999999998 99999999999999999999999 9999999999999987
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=123.66 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+.+|+.||.|..+ . .+|.++|||||+|.+.++|..|+. +++..|+|++|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999988766 2 388999999999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987654
No 129
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=123.02 Aligned_cols=76 Identities=24% Similarity=0.404 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|+. +++..+.|++|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999875 67999999999999999998 8999999999999999886
Q ss_pred CC
Q 008442 471 QR 472 (565)
Q Consensus 471 ~~ 472 (565)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=123.80 Aligned_cols=78 Identities=23% Similarity=0.386 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||.++++++|+.+|+.||.|.+|.++.+ +|||||+|.+.++|..|+. +++..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34689999999999999999999999999999999875 6899999999999999997 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 88754
No 131
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=120.68 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+.+|+.||.|. +.++. +.++|||||+|.+.++|+.|+. +|+..|+|++|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999997 66664 4678999999999999999997 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.+++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988643
No 132
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=118.18 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+.+|++||.|..+.++. +||||+|.+.++|.+|+. +|+..+.|++|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35578999999999999999999999999999999863 499999999999999997 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 988754
No 133
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=119.97 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
..+.++|||+|||+++++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+. +++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999754 5899999999999999997 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 988644
No 134
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=118.18 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+.+|++||.|.++.++. +||||+|.+.++|..|+. +++..+.|++|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4568999999999999999999999999999999863 499999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=120.54 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC--CeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL--GKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~--g~~l~v~ 465 (565)
...++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|+.|+. +|+..+. |++|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999998653 6899999999999999998 8999999 9999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.+++.
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988754
No 136
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=9.7e-16 Score=123.38 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 389 TDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
...++|||+|||.++++++|+ .+|++||.|.+|.++. +|.++|||||+|.+.++|..|+. ++|..++|++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 9999999999999873 67889999999999999999998 899999999999
Q ss_pred EeecCCCCC
Q 008442 464 IARSNPKQR 472 (565)
Q Consensus 464 v~~a~~~~~ 472 (565)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988643
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=122.11 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cC--CcccCCeEEE
Q 008442 388 FTDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KN--KQMFLGKKLS 463 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~--~~~~~g~~l~ 463 (565)
....++|||+|||++ +++++|+.+|++||.|.+|.|+. +||||||+|.+.++|..|+. ++ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 36999999999999999997 64 5679999999
Q ss_pred EeecCCCCC
Q 008442 464 IARSNPKQR 472 (565)
Q Consensus 464 v~~a~~~~~ 472 (565)
|.++.+...
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999987644
No 138
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.9e-15 Score=122.76 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||.++++++|+.+|++||.|..+.++ +|||||+|.+.++|..|+. ++|..++|++|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999987 5899999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 988754
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.6e-15 Score=121.64 Aligned_cols=76 Identities=28% Similarity=0.498 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
.+.++|||+|||+ ++++++|+.+|++||.|.++.+. +|||||+|.+.++|..|+. +++..+.|++|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4578999999998 99999999999999999999983 6899999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987644
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=5e-15 Score=118.86 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 388 FTDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 388 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
..+.++|||+|||+ ++++++|+.+|+.||.|.++.+. +|||||+|.+.++|..|+. +++..++|++|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45679999999998 99999999999999999999983 6899999999999999998 89999999999999
Q ss_pred ecCCCC
Q 008442 466 RSNPKQ 471 (565)
Q Consensus 466 ~a~~~~ 471 (565)
++.++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 987753
No 141
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2e-15 Score=122.90 Aligned_cols=77 Identities=12% Similarity=0.238 Sum_probs=69.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH---cCCcc
Q 008442 392 CTAFLSNI----NLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID----DEH----LAAAVA---KNKQM 456 (565)
Q Consensus 392 ~~l~V~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~----~~~----a~~a~~---~~~~~ 456 (565)
..|||+|| |+.+++.+|+.+|+.||.|.++.++.|+.||.++|||||+|.+ +++ |..|+. +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 777775 49999
Q ss_pred cCCeEEEEeecC
Q 008442 457 FLGKKLSIARSN 468 (565)
Q Consensus 457 ~~g~~l~v~~a~ 468 (565)
|+|++|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=117.42 Aligned_cols=76 Identities=20% Similarity=0.423 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDV--GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
...++|||+|||+++++++|+.+|+.| |.|..+.++ +|||||+|.+.++|..|+. +++..|.|++|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456899999999999999999999999 899988764 5799999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=6.6e-15 Score=121.39 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
...++|||+|||++ +++++|+.+|++||.|..|.+ ++|||||+|.+.++|..|+. +++..|+|++|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999988 46899999999999999996 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.+++.
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986543
No 144
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=2.1e-15 Score=125.27 Aligned_cols=75 Identities=20% Similarity=0.434 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeE-----E
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKK-----L 462 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~-----l 462 (565)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|+.||. ||+..|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999764 899999999999999998 8999999998 7
Q ss_pred EEeecCCC
Q 008442 463 SIARSNPK 470 (565)
Q Consensus 463 ~v~~a~~~ 470 (565)
.|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776664
No 145
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=119.52 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCC-cccCCeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNK-QMFLGKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~-~~~~g~~l~v~ 465 (565)
...++|||+|||+++++++|+.+|++||. |..+.+. ++|||||+|.+.++|..|+. +|+ ..++|++|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44689999999999999999999999999 6655552 46899999999999999998 899 99999999999
Q ss_pred ecCCCCC
Q 008442 466 RSNPKQR 472 (565)
Q Consensus 466 ~a~~~~~ 472 (565)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9988654
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.4e-15 Score=115.32 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c-CCcccCCeEEEE
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K-NKQMFLGKKLSI 464 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~-~~~~~~g~~l~v 464 (565)
.....++|||+|||.++++++|+.+|++||.|.++.++.+ +|||||+|.+.++|..|+. + ++..++|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999863 6899999999999999998 8 999999999999
Q ss_pred eecC
Q 008442 465 ARSN 468 (565)
Q Consensus 465 ~~a~ 468 (565)
.+++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.1e-15 Score=121.31 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||.++++++|+.+|+.||.|.+++++ +++|||||+|.+.++|..|+. +++..++|++|.|.+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999987 356999999999999999997 89999999999999987
Q ss_pred CC
Q 008442 469 PK 470 (565)
Q Consensus 469 ~~ 470 (565)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=116.21 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
..++|||+|||+++++++|+.+|+.||.|.+| +.++.+|+ ||||+|.+.++|.+|+.+++..|+|++|.|..+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 45799999999999999999999999999987 55555665 99999999999999999999999999999998866
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 149
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=4.6e-15 Score=123.49 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||+++++++|+.+|+.||.|.+|.++.+ +.++|||||+|.+.++|..|+. +||..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4689999999999999999999999999999999864 5568999999999999999998 89999999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
++..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7543
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=4.3e-15 Score=117.04 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCc--ccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQ--MFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~--~~~g~~l~v~~ 466 (565)
...++|||+|||+++++++|+++|++||.|.+++|+.+ +||||||+|.++++|.+ +++. .+.|++|.|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEE
Confidence 45689999999999999999999999999999999764 68999999999999884 3444 45799999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.|+..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 988654
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-14 Score=114.79 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|| ++++++|+.+|++||.|.+|.|. .++|||||+|.+.++|..|+. |++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999984 457999999999999999997 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 988654
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=6.2e-15 Score=128.94 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||+++++++|+.+|++||.|.+|+++.+ ++|||||+|.+.++|..|+. +++..|+|++|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 355789999999999999999999999999999999875 57999999999999999998 899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.|++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98864
No 153
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=7e-15 Score=131.73 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|..|+. +++..|+|++|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999998 89999999999999
Q ss_pred ecCCCC
Q 008442 466 RSNPKQ 471 (565)
Q Consensus 466 ~a~~~~ 471 (565)
++.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987653
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=8.9e-15 Score=134.30 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
...+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+..++..+.|+.|.|..
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87653
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=1.4e-14 Score=133.05 Aligned_cols=84 Identities=25% Similarity=0.435 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSN 468 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 468 (565)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..++..|+|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 34589999999999999999999999999999999999889999999999999999999999988999999999999998
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
|+..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 8755
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=1.3e-14 Score=134.97 Aligned_cols=82 Identities=27% Similarity=0.358 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
+.+||||+|||+++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|..|+. +++..+.|+.|.|..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999899999999999999999999998 79999999999999886
Q ss_pred CCC
Q 008442 469 PKQ 471 (565)
Q Consensus 469 ~~~ 471 (565)
+..
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 543
No 157
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.8e-15 Score=115.96 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
..++|||+|||+++++++|+.+|++||.|.+++++.+ ++|||||+|.+.++|++++.. ...+.|++|.|.++.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999998754 689999999999998765332 3456899999999987
Q ss_pred CCC
Q 008442 470 KQR 472 (565)
Q Consensus 470 ~~~ 472 (565)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 158
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=119.02 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT---GKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.++++|++|+. ++ .++|+.+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 888887766 7999999999999999999997 63 366776666
Q ss_pred eecC
Q 008442 465 ARSN 468 (565)
Q Consensus 465 ~~a~ 468 (565)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5544
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.8e-14 Score=127.05 Aligned_cols=82 Identities=27% Similarity=0.395 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
....++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+. ++|..++|++|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999998 899999999999999
Q ss_pred cCC
Q 008442 467 SNP 469 (565)
Q Consensus 467 a~~ 469 (565)
|.+
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=2.2e-14 Score=127.87 Aligned_cols=81 Identities=23% Similarity=0.484 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.++++|..|+. +++..+.|++|.|.++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999998899999999999999999999998 899999999999999876
Q ss_pred CC
Q 008442 470 KQ 471 (565)
Q Consensus 470 ~~ 471 (565)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=125.88 Aligned_cols=81 Identities=20% Similarity=0.403 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEE--------EEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSI--------RILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~--------~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
...++|||+|||+++++++|+.+|+.||.|..+ .+. .+|+++|||||+|.+.++|..|+. +|+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 456899999999999999999999999998763 332 378999999999999999999998 89999999
Q ss_pred eEEEEeecCCCCC
Q 008442 460 KKLSIARSNPKQR 472 (565)
Q Consensus 460 ~~l~v~~a~~~~~ 472 (565)
++|.|.++.+...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987644
No 162
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=9.4e-15 Score=120.40 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
+..++|||+|||+++++++|+.+|++||.|..|.|+. ++|||||+|.+.++|..|+. ||+..+.|++|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 46899999999999999998 8999999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=110.64 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=64.2
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEE
Q 008442 391 ECT-AFLSNINLKATYED----LRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLS 463 (565)
Q Consensus 391 ~~~-l~V~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~ 463 (565)
..| |||+|||+.+++++ |+++|++|| .|.+| +| |||||.|.+.++|++|+. |+|..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999987 558999994 99987 34 999999999999999998 999999999999
Q ss_pred EeecCCCCC
Q 008442 464 IARSNPKQR 472 (565)
Q Consensus 464 v~~a~~~~~ 472 (565)
|.+|..+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987644
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=1.7e-14 Score=128.80 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
.+++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.++++|..|+. +++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999997 89999999999999988
Q ss_pred CCC
Q 008442 469 PKQ 471 (565)
Q Consensus 469 ~~~ 471 (565)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 754
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.8e-14 Score=113.46 Aligned_cols=75 Identities=13% Similarity=0.289 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
+..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.++++|..|+. +++..++|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346899999999999999999999999 99999884 578999999999999999998 8999999999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=8.8e-15 Score=130.60 Aligned_cols=80 Identities=24% Similarity=0.458 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~~ 470 (565)
.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+.+++..++|++|.|.++.|+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 56999999999999999999999999999999999988999999999999999999999999999999999999999886
No 167
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=115.55 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIR-ILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~-~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
...++|||+|||+++++++|+.+|+.||.|.+++ ++.++.+ |.|||+|.+.++|..|+. +|+..|+|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568999999999999999999999999999995 8777544 349999999999999998 899999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+.|+
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9886
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=5.7e-14 Score=131.00 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||.++++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+. +++..|+|++|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 45799999999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred CCCCC
Q 008442 469 PKQRK 473 (565)
Q Consensus 469 ~~~~~ 473 (565)
++...
T Consensus 204 ~~~~~ 208 (216)
T 2qfj_A 204 TPPMP 208 (216)
T ss_dssp SCSST
T ss_pred CCCCC
Confidence 87543
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=115.77 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=68.0
Q ss_pred CCCeEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc-----CCeE
Q 008442 390 DECTAFL--SNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF-----LGKK 461 (565)
Q Consensus 390 ~~~~l~V--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~-----~g~~ 461 (565)
..++||| +|||+++++++|+++|++||.|.+|.|+. .||||||+|.+.++|++|+. |||..+ .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3578999 77999999999999999999999988753 26899999999999999998 999988 6899
Q ss_pred EEEeecCCCCC
Q 008442 462 LSIARSNPKQR 472 (565)
Q Consensus 462 l~v~~a~~~~~ 472 (565)
|.|.++...+-
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999875443
No 170
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=5.3e-14 Score=127.94 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||+++++++|+.+|++||.|.+|+|+.+. +|.++|||||+|.++++|..|+...+..++|++|.|..+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999987 79999999999999999999999666799999999998654
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=5e-14 Score=122.00 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC--eEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG--KKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g--~~l~v~ 465 (565)
....+|||+|||+.+++++|+++|++||.|.+|.|..+ .++|||||+|.+.++|..|+. |||..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34578999999999999999999999999999998653 257999999999999999998 99999965 999999
Q ss_pred ecCCCC
Q 008442 466 RSNPKQ 471 (565)
Q Consensus 466 ~a~~~~ 471 (565)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998864
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=6.6e-14 Score=128.66 Aligned_cols=84 Identities=19% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..|+|++|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998899999999999999999999998 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.|+..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=8e-14 Score=116.19 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHH-cCCcccCC--eEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGL-AYVDFIDDEHLAAAVA-KNKQMFLG--KKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~a~~-~~~~~~~g--~~l~v 464 (565)
..-.+|||+||++.+++++|+++|++||.|.+|.++.+ ++|| |||+|.+.++|..|+. |||..|.| ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34468999999999999999999999999999988764 2588 9999999999999998 89999988 89999
Q ss_pred eecCCCC
Q 008442 465 ARSNPKQ 471 (565)
Q Consensus 465 ~~a~~~~ 471 (565)
.++++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=8.4e-14 Score=124.82 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
..++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..++|++|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 36899999999999999999999999999999999998899999999999999999999998 8999999999999987
No 175
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.9e-14 Score=124.12 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCCC
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~~ 470 (565)
++|||+|||+++++++|+++|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+. +++..+.|++|.|..+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 78899999999999999999996 8999999999999998765
Q ss_pred CC
Q 008442 471 QR 472 (565)
Q Consensus 471 ~~ 472 (565)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 176
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=8.4e-14 Score=129.47 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
.++|||+|||+++++++|+++|+.||.|.+++|+.++ +.++|||||+|.+.++|.+|+. |||..|+|++|.|.++.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999984 5589999999999999999997 899999999999999987
Q ss_pred CC
Q 008442 470 KQ 471 (565)
Q Consensus 470 ~~ 471 (565)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=5.2e-14 Score=125.53 Aligned_cols=80 Identities=28% Similarity=0.634 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~ 469 (565)
+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.++++|..|+. ++..++|+.|.|..+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999998 35789999999988765
Q ss_pred C
Q 008442 470 K 470 (565)
Q Consensus 470 ~ 470 (565)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=2.3e-13 Score=113.02 Aligned_cols=75 Identities=24% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHH-cCCcccCC--eEEEEee
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGL-AYVDFIDDEHLAAAVA-KNKQMFLG--KKLSIAR 466 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~a~~-~~~~~~~g--~~l~v~~ 466 (565)
-..|||+|||+.+++++|+++|++||.|.+|.|+. + .|| |||+|.+.++|..|+. |||..|.| ++|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 35678999999999999999999999999999865 2 286 9999999999999998 89999987 6899999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
|+++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98874
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=8.1e-14 Score=109.52 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCccc
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDV----G-------GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMF 457 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 457 (565)
...++|||+|||+++++++|+++|++| | .|.++.++.+ +|||||+|.++++|.+|+.+|+..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 346899999999999999999999999 8 8999998754 6999999999999999998899999
Q ss_pred CCeEEEEee
Q 008442 458 LGKKLSIAR 466 (565)
Q Consensus 458 ~g~~l~v~~ 466 (565)
.|++|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.3e-13 Score=115.11 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|| ++++++|+.+|+.||.|.+|.++ .++|||||+|.+.++|..|+. +++..|.|++|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999985 457999999999999999997 8999999999999999
Q ss_pred CCCCC
Q 008442 468 NPKQR 472 (565)
Q Consensus 468 ~~~~~ 472 (565)
.++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87754
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=1.5e-12 Score=126.73 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEE
Q 008442 388 FTDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKL 462 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l 462 (565)
....++|||+|||+++++++|+ ++|+.||.|.+|.++. +|+++|||||+|.+.++|..|+. +++..|.|++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3557899999999999999977 8999999999999875 78899999999999999999996 89999999999
Q ss_pred EEeecCCCC
Q 008442 463 SIARSNPKQ 471 (565)
Q Consensus 463 ~v~~a~~~~ 471 (565)
.|.++.+..
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986654
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.8e-13 Score=125.89 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=70.5
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 390 DECTAFLSNIN-LKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 390 ~~~~l~V~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
++++|||+||| ..+++++|+.+|+.||.|.+|+++.+ ++|||||+|.++++|+.|+. |||..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999765 37999999999999999998 8999999999999998
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 183
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=3.4e-11 Score=122.38 Aligned_cols=269 Identities=13% Similarity=0.059 Sum_probs=153.4
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...++.++...|. +...|...+......|+.+.+...|++++...|.+...|...+..+... +..+.+...|+
T Consensus 51 ~a~~~~~~a~~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 125 (388)
T 1w3b_A 51 RSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-SCSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 355667777777776 6777888888777788888888888888888888888888777655443 36667888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHH---------HHHHH-hhccccch
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID---------GLRRR-ILFSGEVE 152 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~---------~~~r~-~~~~~~~e 152 (565)
+++...|....+|..... +....+..+++..+|++++...+.....+..+-..+.. ++.+- ........
T Consensus 126 ~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 126 SALQYNPDLYCVRSDLGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHHHHCTTCTHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCcHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 888888877777776655 33446777888888888876544433322222211110 00000 00000000
Q ss_pred hhhhHHH---HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 153 GVLDYSL---IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 153 ~~~~~~~---~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
.+..... ....+++++..+...+...+....++...+.+....+ +++.|...|++++...|+...+|...+.....
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 0000000 0011223333333333222333344555555555656 66667777777766666666666666666666
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.|+++.|..+|++++.. .+.....|..........|+.+.+...+++++
T Consensus 284 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66777777777766652 12223444444555555566666555555543
No 184
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=5.6e-12 Score=127.04 Aligned_cols=253 Identities=11% Similarity=-0.006 Sum_probs=150.6
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 6 ~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
..++..+...+...+.....|...+......|+++.+..+|++++...|.+..+|..++..... .++.+.+..+|++|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE-NENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3444444443321112345688888888888999999999999999999999999988876554 447788999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc---HHHH---HHHHHHHHHHHHHHhhccccchhhhhHHH
Q 008442 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST---FEEY---LDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~---~~~~---~~~~~~~~~~~~r~~~~~~~~e~~~~~~~ 159 (565)
...|.....|......+ ...+..+++...|++++...+.. +... ..++......+. . ..++..
T Consensus 127 ~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~------~----~g~~~~ 195 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSY-TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV------D----SSVLEG 195 (365)
T ss_dssp HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------C----CHHHHH
T ss_pred hcCCCCHHHHHHHHHHH-HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh------h----hhhHHH
Confidence 99998888888877634 44688899999999998754321 1111 001111111110 0 012223
Q ss_pred HHHHHHHHHHHHHhhhcCCch--hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHH
Q 008442 160 IRETFQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR 237 (565)
+...|.+++.. .+. ...++...+.++...+ ++++|..+|++++...|++..+|...+......|+++.|.
T Consensus 196 A~~~~~~al~~-------~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 196 VKELYLEAAHQ-------NGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp HHHHHHHHHHH-------SCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHh-------CcCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33333333332 122 2345555566666666 6666777777777666666666666666666667777777
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.+|++++.. .+....+|..........|+.+.+...+++++
T Consensus 268 ~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 268 EAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777776652 11223444445555555566666655555554
No 185
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=3.4e-13 Score=120.34 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC--eEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG--KKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g--~~l~v~ 465 (565)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 346899999999999999999999999999999999998899999999999999999999998 89999988 999998
Q ss_pred ec
Q 008442 466 RS 467 (565)
Q Consensus 466 ~a 467 (565)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=3.5e-13 Score=109.16 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHH-cCCcccCCeEE
Q 008442 390 DECTAFLSNINL-----KATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKL 462 (565)
Q Consensus 390 ~~~~l~V~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l 462 (565)
..++|+|.||.. +-++++|++.|++||.|.++.|+.++.+ +.++|||||+|.++++|.+|+. |||..++|++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 357999999963 2368999999999999999999998643 6899999999999999999998 89999999999
Q ss_pred EEeecCCC
Q 008442 463 SIARSNPK 470 (565)
Q Consensus 463 ~v~~a~~~ 470 (565)
.|.++.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99998753
No 187
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.45 E-value=8.2e-13 Score=109.98 Aligned_cols=62 Identities=11% Similarity=0.192 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..||..||.|+.- . |+++||.+|+.++..+..-..+|+.|++||.++|++..||+|+.+|+.
T Consensus 61 I~LWIrYA~~~ei-~-D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 61 ARIQVRFAELKAI-Q-EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHHHHHHHH-H-CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3466677777533 4 999999999999988766689999999999999999999999999998
No 188
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.45 E-value=3.1e-11 Score=119.06 Aligned_cols=237 Identities=8% Similarity=-0.068 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
..+...+......|+.+.+..+|++++...|.+...|..++..+... +..+.+..+|++++...|.+..+|......+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL-NKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555444433322 24444555555555555555555554443222
Q ss_pred HhcC-CHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH-------------------
Q 008442 104 RSRA-SEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET------------------- 163 (565)
Q Consensus 104 ~~~~-~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~------------------- 163 (565)
. .+ ..+++...|++++...+.....+..+-..+... .++..+...
T Consensus 102 ~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 102 M-VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE--------------SEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp H-SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH--------------TCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred H-hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 23 455555555555543332111111111111100 011111112
Q ss_pred --------HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---------cchHHHHHHHHHH
Q 008442 164 --------FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------GAMLEAWQSYISM 226 (565)
Q Consensus 164 --------~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---------~~~~~lw~~yi~~ 226 (565)
+++|+.++...+...+....++..++.+....+ +++.|..+|++++... +....+|...+..
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG-EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 233334443333333333445555555555555 6666666666666553 3334566666666
Q ss_pred HHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 227 EIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
....|+++.|..+|++++.. .. ....+|......-...|+.+.+...+.++
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVL--IP-QNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--ST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhh--Cc-cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66666666666666666542 11 12234444444444555555555555444
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=2e-13 Score=122.63 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHH-cCCcccC---CeEEE
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTG--KSRGLAYVDFIDDEHLAAAVA-KNKQMFL---GKKLS 463 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~a~~-~~~~~~~---g~~l~ 463 (565)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+| .++|||||+|.++++|..|+. +++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998666 899999999999999999998 8887765 56788
Q ss_pred EeecCCCC
Q 008442 464 IARSNPKQ 471 (565)
Q Consensus 464 v~~a~~~~ 471 (565)
|..+.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776543
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2.1e-13 Score=127.09 Aligned_cols=81 Identities=22% Similarity=0.369 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
+.++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+. +++..|.|++|.|..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999998899999999999999999999998 89999999999998876
Q ss_pred CC
Q 008442 469 PK 470 (565)
Q Consensus 469 ~~ 470 (565)
+.
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 191
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=5.8e-11 Score=120.67 Aligned_cols=269 Identities=13% Similarity=0.099 Sum_probs=196.6
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...|. ....|...+......|+.+.+...|++++...|.+..+|......+. ..+..+.+..+|+
T Consensus 85 ~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD----FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH-TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHH
Confidence 467889999988876 77889999998888999999999999999999999999998887655 4457788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHH---------HHHHHH-hhccccch
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI---------DGLRRR-ILFSGEVE 152 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~---------~~~~r~-~~~~~~~e 152 (565)
+++...|.....|..... +....+..+++...|++++...+.....+..+-..+. ..+.+. ....+...
T Consensus 160 ~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGC-VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHHCTTCHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 999999999999988776 4445788999999999999866554443333222211 011110 11111111
Q ss_pred hhhhH---HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 153 GVLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 153 ~~~~~---~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
.+... ......+++|+..+...+...+.....|...+.+....+ +++.|..+|++++...|++...|...+.....
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 00011 011123456677766666555555667888888888888 99999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.|+++.|..+|++++.. .+.....+......-...|+.+.+...+++++
T Consensus 318 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TTCHHHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999873 22234555555666666788777776666654
No 192
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=2.8e-13 Score=121.75 Aligned_cols=79 Identities=25% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC---CeEEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL---GKKLSI 464 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~---g~~l~v 464 (565)
...++|||+|||+++++++|+++|++||.|.+++++.++ +|.++|||||+|.+.++|.+|+. +||..+. |++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999996 79999999999999999999997 8988765 499999
Q ss_pred eecC
Q 008442 465 ARSN 468 (565)
Q Consensus 465 ~~a~ 468 (565)
.+|+
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.42 E-value=5.5e-13 Score=118.71 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeE--EEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKK--LSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~--l~v~ 465 (565)
...++|||+|||..+++++|+.+|++||.|..++++.++.+|.++|||||+|.+.++|.+|+. ++|..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 346799999999999999999999999999999999998899999999999999999999998 8999999974 8887
Q ss_pred ec
Q 008442 466 RS 467 (565)
Q Consensus 466 ~a 467 (565)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=4.5e-13 Score=120.43 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
...++|||+|||+++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+. ++|..|+|++|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999987765 3489999999999999999999998 8999999999999999
Q ss_pred CCC
Q 008442 468 NPK 470 (565)
Q Consensus 468 ~~~ 470 (565)
.|+
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 195
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-10 Score=114.75 Aligned_cols=261 Identities=9% Similarity=0.033 Sum_probs=159.9
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.++...|. +...|..++......|+.+.+..+|++++...|.+..+|...+......+...+.+...|++
T Consensus 41 A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 41 CYKLTSVVMEKDPF----HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp HHHHHHHHHHHCTT----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55667777777665 45556666666666677777777777777777777777777776554443356667777777
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHH---------HHHHHHHhh-ccccchh
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSGEVEG 153 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~---------~~~~~r~~~-~~~~~e~ 153 (565)
|+...|.....|......+ ...+..+++...|++++...+.....+..+-..+ ..++.+-.. .......
T Consensus 117 a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 195 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSF-AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHhCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence 7777777777776665533 3356677777777777764332111111111111 001111100 0010000
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHH
Q 008442 154 ----------VLDYSLIRETFQRASDYLSEQMKN--TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ 221 (565)
Q Consensus 154 ----------~~~~~~~~~~~~~a~~~l~~~~~~--~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~ 221 (565)
..++..+...|++++......... .+....++...+.+....+ +++.|..+|++++...|+...+|.
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~ 274 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-KYAEALDYHRQALVLIPQNASTYS 274 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCccchHHHH
Confidence 013334444455554443221111 1333567788888888888 999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHH-HHHHHhCCHHHH
Q 008442 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWL-RFEREYGTLEDF 273 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~-~fE~~~G~~~~~ 273 (565)
..+.+....|+++.|...|++++.. ..+.+ ..+.... .++...|+.+.+
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~~g~~~a~ 324 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGL--RRDDT-FSVTMLGHCIEMYIGDSEAY 324 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTT--CSCCH-HHHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcc--CCCch-HHHHHHHHHHHHHhCchhcc
Confidence 9999999999999999999999873 22333 3443333 356677776543
No 196
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.40 E-value=5.3e-11 Score=119.68 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=85.0
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
.|+.++...+.........|..........|+++.+..+|++++...|.+..+|...+..... .+..+.+...|++|+.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 126 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-NEQELLAISALRRCLE 126 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 566666554431111245677777777788888999999999999999998888888775544 4467778899999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
..|....+|......+ ...+..+++...|++++...
T Consensus 127 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 127 LKPDNQTALMALAVSF-TNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC
Confidence 8888888888777633 34678888889999888644
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=5.8e-13 Score=123.52 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcc
Q 008442 387 GFTDECTAFLSNINLKA---------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQM 456 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~ 456 (565)
.....++|||+|||..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|+.|+. |++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678999999999998 7999999999999999999985 36999999999999999997 89999
Q ss_pred c------------CCeEEEEeecCCCCC
Q 008442 457 F------------LGKKLSIARSNPKQR 472 (565)
Q Consensus 457 ~------------~g~~l~v~~a~~~~~ 472 (565)
| .|+.|.|.+|.+.+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999987654
No 198
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.37 E-value=4.5e-12 Score=105.58 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=90.0
Q ss_pred ChHhHHHHHHHHHHHHhcCCc------hhHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008442 19 DSEKFQQYMIYLKYEQSSGDP------GRVQLLYERAITDFPVSS--------DLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~------~~~~~lyERal~~~p~~~--------~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (565)
.+.+++.|..|+..+++.|++ ++++.+|+||+...|... .||+.|+.|.+- ++.+.++++|+.|
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei--~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI--QEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH--HCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence 344899999999999999999 999999999999988653 399999998543 6889999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 85 l~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
+..|.....||+.|.. +|..++++..++.|+.+|+-..+
T Consensus 87 ~~~hKkFAKiwi~~Aq-FEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQ-FELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCTTBHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHhccCC
Confidence 9988777999999999 77778999999999999997543
No 199
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=5.8e-11 Score=119.55 Aligned_cols=205 Identities=8% Similarity=-0.075 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 008442 57 SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136 (565)
Q Consensus 57 ~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~ 136 (565)
...|...+......+ +.+.+..+|++++...|....+|......+ ...+..+++...|++++...+.....+..+-..
T Consensus 65 ~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEG-DLPVTILFMEAAILQDPGDAEAWQFLGITQ-AENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344777766554433 667788888888888888877877766533 346778888888888887555444444333333
Q ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCc---hhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Q 008442 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD---GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (565)
Q Consensus 137 ~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~---~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~ 213 (565)
+... .++..+...|.+++........... ....++...+.++...+ ++++|..+|++++...
T Consensus 143 ~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 143 YTNT--------------SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS-VLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHHT--------------TCHHHHHHHHHHHHHHCHHHHCC-------------------CCH-HHHHHHHHHHHHHHHS
T ss_pred HHcc--------------ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhC
Confidence 3211 1445556666666665433322211 12334444555666666 7888888888888887
Q ss_pred cc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 214 GA--MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 214 ~~--~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
|. ...+|...+.+....|+++.|..+|++++.. .+....+|..........|+.+.+...+++++
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77 6778888888888888888888888888763 12234566666666667788777777777665
No 200
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.37 E-value=5.6e-10 Score=115.51 Aligned_cols=253 Identities=11% Similarity=-0.007 Sum_probs=179.1
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 008442 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 7 ~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
.+..++...|. +...|...+......|+++.+..+|++++...|.+..+|...+..... .+..+.+..+|++++.
T Consensus 14 ~~~~~~~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 14 GTENLYFQSMA----DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ---------CH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred cccccccccHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 34444555544 889999999999999999999999999999999999999998876554 4477889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccH---HHHHHHHHHH---HHHHHHHhhccccchhhhhHHHH
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF---EEYLDLFLTR---IDGLRRRILFSGEVEGVLDYSLI 160 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~---~~~~~~~~~~---~~~~~r~~~~~~~~e~~~~~~~~ 160 (565)
..|.....|......+. ..+..+++...|++++...+... ..+..+...+ ..+..-. ....
T Consensus 89 ~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------~~~~ 155 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL------------NAFG 155 (450)
T ss_dssp HCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred cCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 99999999988776444 47889999999999998665433 2222221110 0000000 0011
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHH
Q 008442 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (565)
Q Consensus 161 ~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~ 240 (565)
...+++|+.++...+...+....++...+.++...+ +++.|..+|++++...|.+..+|...+......|+++.|..+|
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG-EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122344444444444334445567778888888888 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCcHHHHHHH------------HHHHHHhCCHHHHHHHHHHHh
Q 008442 241 KRCYSKRFTGTGSEDICHAW------------LRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 241 ~~al~~~~~~~~~~~i~~~~------------~~fE~~~G~~~~~~~~~~k~~ 281 (565)
++++.. . +....++..+ ...-...|+.+.+...+.+++
T Consensus 235 ~~~~~~--~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 235 RECLKL--D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp HHHHHH--C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHh--C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999873 2 2233444433 444555688777776666654
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=9.9e-13 Score=128.66 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKF-TGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 466 (565)
...++|||+|||+. +++++|+++|+.||.|..|+++.+.. ||.++|||||+|.+.++|.+|+.+||..|+|++|.|.+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSL 287 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEE
Confidence 45689999999999 99999999999999999999999874 49999999999999999999997799999999999999
Q ss_pred cCCC
Q 008442 467 SNPK 470 (565)
Q Consensus 467 a~~~ 470 (565)
+.|+
T Consensus 288 a~~k 291 (292)
T 2ghp_A 288 ADKK 291 (292)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9886
No 202
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.37 E-value=2e-12 Score=125.89 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINLKA-TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
...++|||+|||+++ ++++|+.+|+.||.|.++.|+.++ +|.++|||||+|.+.++|..|+. ++|..++|++|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456899999999995 999999999999999999999987 89999999999999999999998 899999999999999
Q ss_pred cCCCCC
Q 008442 467 SNPKQR 472 (565)
Q Consensus 467 a~~~~~ 472 (565)
+.|+..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 988754
No 203
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=2.9e-12 Score=117.64 Aligned_cols=77 Identities=26% Similarity=0.374 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeec
Q 008442 390 DECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARS 467 (565)
Q Consensus 390 ~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a 467 (565)
.+++|||+|||+ ++++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..|+. +++..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998764 6899999999999999998 8999999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
.+..
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7654
No 204
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.36 E-value=7.6e-11 Score=116.12 Aligned_cols=98 Identities=10% Similarity=-0.006 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
..|...+......|+.+.+..+|++++...|.+...|...+..... .++.+.+...|++++...|....+|......+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~- 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSH- 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH-
Confidence 4566666666667777788888888888888888877776664443 34666777888888887777777777666533
Q ss_pred HhcCCHHHHHHHHHHHHhcc
Q 008442 104 RSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 104 ~~~~~~~~~~~if~ral~~~ 123 (565)
...+..+++...|++++...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 34567777778888877643
No 205
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=1.8e-13 Score=123.10 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeec
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARS 467 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 467 (565)
..+.++|||+|||+++++++|+++|..||.+..+ ++.+..+|.++|||||+|.++++|..|+.+++..+.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 3567899999999999999999999999876653 333334889999999999999999999999999999999999998
Q ss_pred CCCC
Q 008442 468 NPKQ 471 (565)
Q Consensus 468 ~~~~ 471 (565)
.+..
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7754
No 206
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=2.8e-12 Score=124.87 Aligned_cols=83 Identities=13% Similarity=0.242 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSN 468 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~ 468 (565)
..++|||+|||+++++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..++|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999996 89999999999999997
Q ss_pred CCCC
Q 008442 469 PKQR 472 (565)
Q Consensus 469 ~~~~ 472 (565)
+...
T Consensus 174 ~~~~ 177 (284)
T 3smz_A 174 AGQL 177 (284)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 7543
No 207
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=6.4e-12 Score=103.55 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCC
Q 008442 387 GFTDECTAFLSNINLKAT-----------YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNK 454 (565)
Q Consensus 387 ~~~~~~~l~V~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~ 454 (565)
.....++|+|.||..... +++|+.+|++||.|.+|.| .++ .++|||||+|.+.++|..|+. |||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999954432 5799999999999999965 443 379999999999999999997 899
Q ss_pred cccCCeEEEEeecCCCCC
Q 008442 455 QMFLGKKLSIARSNPKQR 472 (565)
Q Consensus 455 ~~~~g~~l~v~~a~~~~~ 472 (565)
..++|++|.|.++.+...
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987643
No 208
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.35 E-value=2.9e-10 Score=122.33 Aligned_cols=237 Identities=8% Similarity=-0.043 Sum_probs=167.5
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
.+...|...+......|+++.+..+|++++...|.+...|..++..+...+ ..+.+..+|++++...|....+|...+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG-EKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 478899999999999999999999999999999999999999988766544 6778999999999999999999988776
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 180 (565)
.+ ...+..+++..+|++++...+.....+..+-..+... .+++.+...|++++. ..+.
T Consensus 382 ~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~-------~~~~ 439 (597)
T 2xpi_A 382 YY-LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------------GEHDQAISAYTTAAR-------LFQG 439 (597)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------TCHHHHHHHHHHHHH-------TTTT
T ss_pred HH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHH-------hCcc
Confidence 44 4468899999999999975544333333222222110 122333334443332 2223
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc--CCCCc--HHH
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRF--TGTGS--EDI 256 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~--~~~~~--~~i 256 (565)
....|...+..+...+ ++++|..+|++++...|.+..+|...+......|+++.|..+|++++...- +.+.. ..+
T Consensus 440 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 3445666666666777 788888888888877777777788888887788888888888888775310 11111 356
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 257 CHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 257 ~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
|......-...|+.+.+...+++++
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666777777777776666654
No 209
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.35 E-value=3.6e-10 Score=121.61 Aligned_cols=248 Identities=13% Similarity=0.102 Sum_probs=191.0
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...|. +...|..++......|+.+.+..+|++++...|.+..+|...+...... +..+.+..+|+
T Consensus 323 ~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 397 (597)
T 2xpi_A 323 DVLAITTKILEIDPY----NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV-NKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHHHCTT----CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 466778888877765 6678889999888999999999999999999999999999988765544 47788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~ 162 (565)
+++...|.....|...+..+.. .+..+++..+|++++...+.....+..+-..+... .+++....
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~ 462 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--------------GNILLANE 462 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--------------TCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--------------CCHHHHHH
Confidence 9999999999999988874444 68899999999999976554333333222222110 13444455
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------ccch-HHHHHHHHHHHHHcCChHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI------SGAM-LEAWQSYISMEIELDHINE 235 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~------~~~~-~~lw~~yi~~e~~~~~~~~ 235 (565)
.|.+++.. .+.....|...+.++...+ ++++|..+|++++.. .|+. ..+|...+......|+++.
T Consensus 463 ~~~~~~~~-------~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 463 YLQSSYAL-------FQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HHHHHHHH-------CCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHh-------CCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 55554442 2334456778888888888 999999999999987 4443 7899999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 236 aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
|..+|++++.. . +....+|......-...|+.+.+...+++++
T Consensus 535 A~~~~~~~~~~--~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 535 AIDALNQGLLL--S-TNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHH--S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999873 2 2345777777788888999988887777664
No 210
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.35 E-value=8.2e-10 Score=109.99 Aligned_cols=215 Identities=14% Similarity=0.001 Sum_probs=121.5
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.++...|. +...|..........|+++.+...|++++...|.+...|...+......+ +.+.+..+|++
T Consensus 22 A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 96 (359)
T 3ieg_A 22 ALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG-KLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC-ChHHHHHHHHH
Confidence 55667777776665 56677777777777777788888888888878877777777776554433 56667788888
Q ss_pred HHHcCC---CCHHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccc
Q 008442 84 ATKNCP---WVGELWVRSLL-----------SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSG 149 (565)
Q Consensus 84 Al~~~p---~~~~lW~~yi~-----------~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (565)
++...| ....+|..+.. .+....+..+++..+|++++...+.....+..+-..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK---------- 166 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----------
Confidence 887777 66666655420 122335677777777777776544433322222221110
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHH------
Q 008442 150 EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY------ 223 (565)
Q Consensus 150 ~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~y------ 223 (565)
..-+.+|+.++...+...+.....+...+.++...+ +++.|...|++++...|+....|..|
T Consensus 167 -----------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 167 -----------EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG-DHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp -----------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 011222333333333323333344445555555555 55555555555555555554444333
Q ss_pred ------HHHHHHcCChHHHHHHHHHHHh
Q 008442 224 ------ISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 224 ------i~~e~~~~~~~~aR~i~~~al~ 245 (565)
+......|+++.|..+|++++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334445555555555555554
No 211
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.34 E-value=1.4e-09 Score=108.25 Aligned_cols=249 Identities=9% Similarity=-0.029 Sum_probs=180.9
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC---CCHHHHHHHHH-----------HHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP---VSSDLWLDYTQ-----------YLD 68 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p---~~~~lW~~Y~~-----------~l~ 68 (565)
++...|+.++...|. +...|..........|+.+.+...|++++...| .+...|..+.. .+.
T Consensus 55 ~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 55 AALPDLTKVIALKMD----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888776 678899999999999999999999999999999 88998887731 122
Q ss_pred HhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhcc
Q 008442 69 KTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148 (565)
Q Consensus 69 ~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (565)
...+..+.+..+|++++...|....+|......+ ...+..+++...|++++...+.....+..+-..+...
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-------- 201 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECF-IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL-------- 201 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH--------
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------
Confidence 3445778899999999999999999988877644 4478899999999999987665544443333332210
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHH------------HHHHHHHcCCChHHHHHHHHHHHHHccch
Q 008442 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY------------WAHLEQSMGKDMVSARGVWERLLKISGAM 216 (565)
Q Consensus 149 ~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~------------~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (565)
.++..+...|.+++... +.....+.. .+.+....+ +++.|..+|++++...|+.
T Consensus 202 ------~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~ 267 (359)
T 3ieg_A 202 ------GDHELSLSEVRECLKLD-------QDHKRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTEPSV 267 (359)
T ss_dssp ------TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSS
T ss_pred ------CCHHHHHHHHHHHHhhC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCc
Confidence 13344445555554432 222222222 255566777 9999999999999988876
Q ss_pred HHH----HHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 217 LEA----WQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 217 ~~l----w~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
..+ |...+......|+++.|..+|++++.. .+....+|......-...|+.+.+...+++++
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 643 555677788899999999999999873 22334666667777777899888888877765
No 212
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.34 E-value=1.8e-12 Score=121.80 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEee
Q 008442 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIAR 466 (565)
Q Consensus 389 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 466 (565)
.++++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|+. +++..+.|++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678999999999 99999999999999999999998764 7899999999999999997 899999999999999
Q ss_pred cCCCC
Q 008442 467 SNPKQ 471 (565)
Q Consensus 467 a~~~~ 471 (565)
+.+..
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 97653
No 213
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=6.8e-13 Score=107.42 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=64.0
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEE
Q 008442 396 LSNINLKATYEDLRRFF------------SDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKL 462 (565)
Q Consensus 396 V~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l 462 (565)
+.|||..+++++|++.| ++||.|.+|.|+.++ +|+++|||||+|.++++|.+|+. |||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888877766 999999999999986 68999999999999999999998 89999999999
Q ss_pred EEeec
Q 008442 463 SIARS 467 (565)
Q Consensus 463 ~v~~a 467 (565)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 214
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.31 E-value=1.1e-10 Score=108.58 Aligned_cols=197 Identities=14% Similarity=-0.005 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
+...|..........|+++.+...|+++|...|.+...|...+..+.. .+..+.+...|++|+...|.....|......
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 556888888888889999999999999999999999999998876554 4477889999999999999998888877654
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 008442 102 LERSR-----------ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (565)
Q Consensus 102 le~~~-----------~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~ 170 (565)
+.. . +..+++...|++++...+.....+..+-..+.. ..+++.....|++++..
T Consensus 83 ~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~--------------~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 83 YVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL--------------LGERDKAEASLKQALAL 147 (217)
T ss_dssp HHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------TTCHHHHHHHHHHHHHH
T ss_pred HHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------------cCChHHHHHHHHHHHhc
Confidence 433 3 455666666666665444433222222221110 01223333334433332
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
. ....++...+.+....+ +++.|...|++++...|++..+|..++.+....|+++.|...|+++
T Consensus 148 -------~-~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 148 -------E-DTPEIRSALAELYLSMG-RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp -------C-CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred -------c-cchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1 22334445555555555 6666666666666666666666666666666666666666666555
No 215
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.31 E-value=6e-10 Score=111.90 Aligned_cols=240 Identities=10% Similarity=-0.015 Sum_probs=162.7
Q ss_pred CCchhHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHH
Q 008442 37 GDPGRVQL-LYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (565)
Q Consensus 37 ~~~~~~~~-lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~ 111 (565)
++++.+.. .|++++...|.++ ..|...+..... .++.+.+..+|++++...|....+|......+ ...+..++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ-AENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCcCHHH
Confidence 45667777 8999998887764 457766665544 34778899999999999999888888776633 44688899
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH---------HHHHHhh-ccccchh------------------hhhHHHHHHH
Q 008442 112 ISTVFEKSLLCAFSTFEEYLDLFLTRID---------GLRRRIL-FSGEVEG------------------VLDYSLIRET 163 (565)
Q Consensus 112 ~~~if~ral~~~~~~~~~~~~~~~~~~~---------~~~r~~~-~~~~~e~------------------~~~~~~~~~~ 163 (565)
+...|++++...+.....+..+-..+.. ++.+-.. ....... ..........
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 9999999997655433333322222111 1111111 1110000 0111113355
Q ss_pred HHHHHHHHHhhhcCCch--hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
+.+|+.++...+...+. ...++...+.+....+ +++.|..+|++++...|+...+|...+......|+++.|..+|+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777777666654444 4667778888888888 99999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 242 ~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
+++.. . +....++..........|+.+.+...+.+++.
T Consensus 276 ~al~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 276 RALEL--Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHH--C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHh--C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99873 2 23345666666777778998888877777653
No 216
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=4.6e-12 Score=123.92 Aligned_cols=82 Identities=11% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEe
Q 008442 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIA 465 (565)
Q Consensus 386 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~ 465 (565)
....+.++|||+|||+++++++|+.+|+.||.|.+|.|+.++ .+ ++|||||+|.++++|..|+.+++..+.|++|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL-KK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 345678999999999999999999999999999999999986 33 5899999999999999999999999999999998
Q ss_pred ecCC
Q 008442 466 RSNP 469 (565)
Q Consensus 466 ~a~~ 469 (565)
.+..
T Consensus 114 ~~~~ 117 (292)
T 2ghp_A 114 HLTE 117 (292)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8754
No 217
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.30 E-value=1.2e-09 Score=112.87 Aligned_cols=270 Identities=11% Similarity=-0.007 Sum_probs=185.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...|. +...|...+......|+++.+..+|++++...|.+...|..++...... +..+.+..+|+
T Consensus 44 ~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 118 (450)
T 2y4t_A 44 DALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-GKLDEAEDDFK 118 (450)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467889999988776 6888999999888899999999999999999999999999988765544 47788999999
Q ss_pred HHHHcCCCCH---HHHHHHHHH-----------HHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHH---------
Q 008442 83 RATKNCPWVG---ELWVRSLLS-----------LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID--------- 139 (565)
Q Consensus 83 rAl~~~p~~~---~lW~~yi~~-----------le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~--------- 139 (565)
+++...|... ..|...+.. .....+..+++..+|++++...+.....+..+-..+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999889877 777654321 12335788999999999987554433333322222211
Q ss_pred HHHHHh-hccccchhhhhH---HHHHHHHHHHHHHHHhhhcCCchhHHHHHHH------------HHHHHHcCCChHHHH
Q 008442 140 GLRRRI-LFSGEVEGVLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYW------------AHLEQSMGKDMVSAR 203 (565)
Q Consensus 140 ~~~r~~-~~~~~~e~~~~~---~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~------------a~~e~~~~~~~~~ar 203 (565)
.+.+.. ........+... .....-+++|+.++...+...+.....+..+ +......+ +++.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~ 277 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-RYTDAT 277 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 000000 000111100000 0011223455555555444333333334333 66677778 999999
Q ss_pred HHHHHHHHHccchH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 204 GVWERLLKISGAML----EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 204 ~i~e~~l~~~~~~~----~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
.+|++++...|++. .+|...+......|+++.|..+|++++.. .+....+|......-...|+.+.+...+++
T Consensus 278 ~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999988764 47777888888999999999999999873 223446777777777888999988888887
Q ss_pred Hh
Q 008442 280 VT 281 (565)
Q Consensus 280 ~~ 281 (565)
++
T Consensus 355 al 356 (450)
T 2y4t_A 355 AQ 356 (450)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 218
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=7.4e-12 Score=120.12 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 386 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
....+.++|||+|||+++++++|+.+|+.||.|.+|.+..+ +|||||+|.+.++|..|+. +++..|.|++|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34466789999999999999999999999999999998643 6999999999999999998 8999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
.++.+.
T Consensus 91 ~~a~~~ 96 (261)
T 3sde_A 91 RFATHG 96 (261)
T ss_dssp EECCCS
T ss_pred eecccC
Confidence 998764
No 219
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=8.4e-12 Score=119.74 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-c-CCcccC---CeEEEE
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-K-NKQMFL---GKKLSI 464 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~-~~~~~~---g~~l~v 464 (565)
..++|||+|||+.+++++|+.+|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|+. + ++..+. |++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46799999999999999999999999999999999995 99999999999999999999998 7 555554 999999
Q ss_pred eecCCCCC
Q 008442 465 ARSNPKQR 472 (565)
Q Consensus 465 ~~a~~~~~ 472 (565)
.++.+...
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99987543
No 220
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=4.5e-12 Score=116.52 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCe----EE
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGV--SSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGK----KL 462 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~----~l 462 (565)
..++|||+|||+++++++|+++|++||.| .+++++.++ |.++|||||+|.+.++|..||. ||+..|.|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46799999999999999999999999999 899998874 5567999999999999999998 899999887 56
Q ss_pred EEeec
Q 008442 463 SIARS 467 (565)
Q Consensus 463 ~v~~a 467 (565)
.|.+|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 221
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=7.4e-11 Score=94.11 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEEEeecCCCCC
Q 008442 401 LKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLSIARSNPKQR 472 (565)
Q Consensus 401 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~~~~~ 472 (565)
.++++++|+.+|++||.|.+|.|+ ++++|||||+|.+.++|..|+.. ...+.|++|.|.++.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCCC
Confidence 468999999999999999999987 46789999999999999999984 3336799999999987654
No 222
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=8.5e-12 Score=101.03 Aligned_cols=81 Identities=21% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHH-cCCcc
Q 008442 390 DECTAFLSNI--NLKAT--------YEDLRRFFSDVGGVSSIRILHDKFT--GKSRGLAYVDFIDDEHLAAAVA-KNKQM 456 (565)
Q Consensus 390 ~~~~l~V~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~a~~-~~~~~ 456 (565)
+.+.|.+.|+ |.++. +++|++.|++||.|.+|.|+.++.+ +.++|||||+|.++++|.+|+. |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3568899998 33443 3689999999999999999988643 3689999999999999999997 89999
Q ss_pred cCCeEEEEeecCCC
Q 008442 457 FLGKKLSIARSNPK 470 (565)
Q Consensus 457 ~~g~~l~v~~a~~~ 470 (565)
++||+|.|.++.+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 223
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.25 E-value=7.6e-09 Score=97.78 Aligned_cols=227 Identities=6% Similarity=-0.088 Sum_probs=174.2
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC-------HH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GE 93 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~-------~~ 93 (565)
.....|..........|+.+.+..+|++++... .+..+|...+..... .++.+.+...|++++...|.. ..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYE-KGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 356788888888889999999999999999999 889999888875554 447888999999999977654 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 94 lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
+|......+ ...+..+++...|++++...+.. . ++ .....+++++..+..
T Consensus 81 ~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~-~----~~------------------------~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 81 SFARIGNAY-HKLGDLKKTIEYYQKSLTEHRTA-D----IL------------------------TKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCH-H----HH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcccHHHHHHHHHHHHhcCchh-H----HH------------------------HHHhHHHHHHHHHHH
Confidence 666655533 44688999999999999754431 0 00 111234444555545
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCc
Q 008442 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~ 253 (565)
.+...+....++...+.+....+ +++.|..+|++++...|....+|...+......|+++.|..+|++++.. . +..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~-~~~ 206 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--D-PNF 206 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-TTC
T ss_pred HHHcCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C-HHH
Confidence 44445556677888888888888 9999999999999999999999999999999999999999999999973 2 233
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 254 EDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
...|......-...|+.+.+...+.+++..
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 466666666777789988888777776544
No 224
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.25 E-value=1.3e-11 Score=110.33 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCccc
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDV----G-------GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMF 457 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 457 (565)
++.++|||+|||+++++++|+++|+.| | .|.++.+. .++|||||+|.++++|..|+.+++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 456899999999999999999999999 6 66776654 447999999999999999998899999
Q ss_pred CCeEEEEeecCCC
Q 008442 458 LGKKLSIARSNPK 470 (565)
Q Consensus 458 ~g~~l~v~~a~~~ 470 (565)
.|++|.|..+.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 225
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.25 E-value=2e-09 Score=101.82 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=148.7
Q ss_pred ChHh-HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 19 DSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 19 ~~~~-~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
++.. ...|...+......|+++.+..+|++++...|.+..+|..++..... .++.+.+..+|++++...|....+|..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 4544 67899999988899999999999999999999999999988876554 447788999999999999999899888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 008442 98 SLLSLERSRASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~ 175 (565)
+...+ ...+..+++...|++++. ..+.....+..+-..+.. . .+++.+...|.+++..
T Consensus 111 la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~------g~~~~A~~~~~~~~~~----- 170 (252)
T 2ho1_A 111 YGGFL-YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ--------M------KKPAQAKEYFEKSLRL----- 170 (252)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--------T------TCHHHHHHHHHHHHHH-----
T ss_pred HHHHH-HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH--------c------CCHHHHHHHHHHHHhc-----
Confidence 77644 447889999999999988 333222222222111110 0 1233334444444332
Q ss_pred cCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+.....+..++.++...+ +++.|..+|++++...|.....|...+.+....|+++.|..+|++++.
T Consensus 171 --~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 171 --NRNQPSVALEMADLLYKER-EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp --CSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2333456667777777777 888888888888888887788888888888888888888888888876
No 226
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.25 E-value=2.8e-09 Score=104.79 Aligned_cols=230 Identities=10% Similarity=-0.002 Sum_probs=160.7
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...|. +...|...+......|+.+.+...|++++...|.+...|...+..... .++.+.+...|+
T Consensus 39 ~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 113 (327)
T 3cv0_A 39 EAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASLR 113 (327)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 366788888888876 778899888888889999999999999999999999999988876554 447788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~ 162 (565)
+++...|....+|...+..+.. . .. ..+. ...... ....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~---~~~~------~~~~~~-----------~~~~ 152 (327)
T 3cv0_A 114 AWLLSQPQYEQLGSVNLQADVD--------------------I-DD---LNVQ------SEDFFF-----------AAPN 152 (327)
T ss_dssp HHHHTSTTTTTC--------------------------------------------------CCT-----------TSHH
T ss_pred HHHHhCCccHHHHHHHhHHHHH--------------------H-HH---HHHH------HHhHHH-----------HHcc
Confidence 9999888776666554221100 0 00 0000 000000 0012
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
.+.+|+.++...+...+....++...+.+....+ +++.|..+|++++...|+...+|...+......|+++.|..+|++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333333333333323334567777788888888 999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 243 CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 243 al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
++.. . +....+|..........|+.+.+...+++++.
T Consensus 232 a~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 232 ALDI--N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHH--C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc--C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9873 1 23345666666677778998888877776653
No 227
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.24 E-value=2.3e-11 Score=118.20 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC-CeEEEEe
Q 008442 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL-GKKLSIA 465 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~-g~~l~v~ 465 (565)
....++|||+|||.++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|+. +||..|. |++|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999998654 5899999999999999998 8999999 9999999
Q ss_pred ecC
Q 008442 466 RSN 468 (565)
Q Consensus 466 ~a~ 468 (565)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 975
No 228
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.24 E-value=5.2e-10 Score=105.08 Aligned_cols=215 Identities=11% Similarity=0.026 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
..|..........|+++.+..+|++++...|.+..+|...+..... .+..+.+..+|++++...|....+|......+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~- 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSAATAYYGAGNVY- 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH-
Confidence 4566666666677899999999999999999999999998876554 44778899999999999999888888877634
Q ss_pred HhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 008442 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (565)
Q Consensus 104 ~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 183 (565)
...+..+.+...|++++...+.....+..+-..+.. . .++..+...|.+++.. .+....
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~------~~~~~A~~~~~~~~~~-------~~~~~~ 160 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK--------L------EQPKLALPYLQRAVEL-------NENDTE 160 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--------T------SCHHHHHHHHHHHHHH-------CTTCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------h------ccHHHHHHHHHHHHHh-------CCccHH
Confidence 447889999999999998655443332222222110 0 1334444455544443 333455
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~f 263 (565)
++..++.+....+ +++.|..+|++++...|....+|...+.+....|+++.|..+|++++.. . +....++..+..+
T Consensus 161 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~-p~~~~~~~~~~~l 236 (243)
T 2q7f_A 161 ARFQFGMCLANEG-MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--Q-PDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--C-TTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--C-cchHHHHHHHHHH
Confidence 7777888888888 9999999999999999999999999999999999999999999999873 2 2334455444444
Q ss_pred HH
Q 008442 264 ER 265 (565)
Q Consensus 264 E~ 265 (565)
+.
T Consensus 237 ~~ 238 (243)
T 2q7f_A 237 GH 238 (243)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 229
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.23 E-value=1.3e-11 Score=113.23 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC-CeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL-GKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~-g~~l~v~ 465 (565)
...++|||+|||..+++++|+++|+.|| .|.+++++.+ .+|||||+|.+.++|..|+. ++|..++ |++|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999653 26899999999999999998 8999999 9999999
Q ss_pred ecCCC
Q 008442 466 RSNPK 470 (565)
Q Consensus 466 ~a~~~ 470 (565)
+++|+
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99875
No 230
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=2.4e-11 Score=114.17 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccC-CeEEEEe
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFL-GKKLSIA 465 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~-g~~l~v~ 465 (565)
...++|||+|||.++++++|+++|+.|| .|..++++.+ ++|||||+|.+.++|.+|+. +++..+. |++|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999653 36899999999999999998 8999999 9999999
Q ss_pred ecCCC
Q 008442 466 RSNPK 470 (565)
Q Consensus 466 ~a~~~ 470 (565)
+++|+
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99875
No 231
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.23 E-value=4.8e-09 Score=96.92 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=148.3
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi 99 (565)
+.+...|...+......|+++.+..+|++++...|.+..+|..++..... .++.+.+..+|++++...|....+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45778899999999999999999999999999999999999988875554 44778899999999999999999988877
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 008442 100 LSLERSR-ASEEEISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (565)
Q Consensus 100 ~~le~~~-~~~~~~~~if~ral~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~ 176 (565)
. +.... +..+++...|++++.. .+.....+..+-..+.. . .++..+...|.+++..
T Consensus 84 ~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~------~~~~~A~~~~~~~~~~------ 142 (225)
T 2vq2_A 84 W-FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK--------Q------GQFGLAEAYLKRSLAA------ 142 (225)
T ss_dssp H-HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH--------T------TCHHHHHHHHHHHHHH------
T ss_pred H-HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH--------c------CCHHHHHHHHHHHHHh------
Confidence 6 44457 8899999999999982 22222222222111110 0 1333344444444332
Q ss_pred CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+.....+...+.+....+ +++.|..+|++++...| .....|...+.++...|+.+.+..+++.++.
T Consensus 143 -~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 143 -QPQFPPAFKELARTKMLAG-QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp -STTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2333456666777777777 88888888888888887 7777787777788888888888888888765
No 232
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=2.9e-11 Score=99.78 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHH-cCCcccCC
Q 008442 390 DECTAFLSNINL--KA---TYEDLRRFFSDVGGVSSIRILHDKF----TGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 390 ~~~~l~V~nl~~--~~---~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
..++|++.|+-. ++ -+++|++.|++||.|.+|.|+.++. ++.++||+||+|.++++|.+|+. |||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 357899999832 22 3689999999999999999998863 45788999999999999999998 89999999
Q ss_pred eEEEEeecCC
Q 008442 460 KKLSIARSNP 469 (565)
Q Consensus 460 ~~l~v~~a~~ 469 (565)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 233
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.21 E-value=3.6e-09 Score=111.99 Aligned_cols=270 Identities=9% Similarity=-0.036 Sum_probs=161.1
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|...|. +...|...+......|+++.+...|++++...|.+...|..++......+ ..+.+...|+
T Consensus 43 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 117 (537)
T 3fp2_A 43 EAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG-NFTDAMFDLS 117 (537)
T ss_dssp -CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 467788999988876 77889888888888899999999999999999999999988887655433 5566666664
Q ss_pred HHHHcCCCCHHHHH------------------------------------------------------------------
Q 008442 83 RATKNCPWVGELWV------------------------------------------------------------------ 96 (565)
Q Consensus 83 rAl~~~p~~~~lW~------------------------------------------------------------------ 96 (565)
++...|.....|.
T Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp -HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred -HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 5544443222111
Q ss_pred --HHHHH-------HHHhcCCHHHHHHHHHHHHhcccccHHHHH---HHHHHHHHH-------------HHHHhhccccc
Q 008442 97 --RSLLS-------LERSRASEEEISTVFEKSLLCAFSTFEEYL---DLFLTRIDG-------------LRRRILFSGEV 151 (565)
Q Consensus 97 --~yi~~-------le~~~~~~~~~~~if~ral~~~~~~~~~~~---~~~~~~~~~-------------~~r~~~~~~~~ 151 (565)
..... +....+.++++..+|++++...+.....+. ..+...... +.+........
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~ 276 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc
Confidence 00000 000012456778888888875544322111 111111100 00000000000
Q ss_pred hhhhhHHHH---HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 008442 152 EGVLDYSLI---RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (565)
Q Consensus 152 e~~~~~~~~---~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~ 228 (565)
..+.....+ ...+..|+.++...+...+....++...+.+....+ +++.|...|++++...|....+|...+....
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 000000000 011234444444444434445566777777887777 8888999999998888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
..|+++.|..+|++++.. . +....+|..+.......|+.+.+...+.+++.
T Consensus 356 ~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLK-F--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH-C--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999988873 1 22335666666777777888877777776643
No 234
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.21 E-value=3.1e-11 Score=110.63 Aligned_cols=76 Identities=25% Similarity=0.425 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccC
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDV----G-------GVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL 458 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 458 (565)
..++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.++++|..|+.+++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5555554 45679999999999999999988999999
Q ss_pred CeEEEEeecCCCC
Q 008442 459 GKKLSIARSNPKQ 471 (565)
Q Consensus 459 g~~l~v~~a~~~~ 471 (565)
|++|.|.++.+..
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999887653
No 235
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.19 E-value=3.5e-09 Score=107.22 Aligned_cols=203 Identities=9% Similarity=0.007 Sum_probs=155.8
Q ss_pred ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 008442 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~y 98 (565)
++....+|..........|+.+++..+|+++|..+|.+..+|......+...+++.+.+...|++||...|.+..+|...
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 56678899999998888999999999999999999999999999888666555448889999999999999999999887
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 008442 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (565)
Q Consensus 99 i~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~ 178 (565)
...+.. .+..+++...|++||...+..+..|..+-..+.. ...+++|+.++...+...
T Consensus 173 g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~---------------------~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 173 RVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE---------------------FKLWDNELQYVDQLLKED 230 (382)
T ss_dssp HHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------HTCCTTHHHHHHHHHHHC
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH---------------------cCChHHHHHHHHHHHHhC
Confidence 764444 6788899999999998776655444333322211 011233444444444434
Q ss_pred chhHHHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHccchHHHHHHHHHHHHHcC--ChHHHHHHHHHH
Q 008442 179 DGLLRLYAYWAHLEQSMGKDMVSA-----RGVWERLLKISGAMLEAWQSYISMEIELD--HINEARSIYKRC 243 (565)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~a-----r~i~e~~l~~~~~~~~lw~~yi~~e~~~~--~~~~aR~i~~~a 243 (565)
+.....|...+.+....++..+.| ...|+++|...|++...|.....+....| +++.|.+.+.++
T Consensus 231 P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 231 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 555677887787777745354667 48899999999999999999998887777 688998888877
No 236
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.17 E-value=6.7e-09 Score=93.30 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=132.8
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
++..+|..........|+.+.+...|+++|..+|.+...|...+..... .+..+.+...+++++...|....+|.....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3567888888888889999999999999999999999999998875544 447778999999999999998888877665
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 180 (565)
.. ...+..+.+...+.+++...+.
T Consensus 82 ~~-~~~~~~~~a~~~~~~a~~~~~~------------------------------------------------------- 105 (184)
T 3vtx_A 82 AN-FMIDEKQAAIDALQRAIALNTV------------------------------------------------------- 105 (184)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHCTT-------------------------------------------------------
T ss_pred HH-HHcCCHHHHHHHHHHHHHhCcc-------------------------------------------------------
Confidence 33 3345566666666665542221
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
....+...+.+....+ ++++|...|+++++..|.+..+|...+......|+++.|...|++||.
T Consensus 106 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1223444555666777 999999999999999999999999999999999999999999999987
No 237
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.13 E-value=7.7e-09 Score=98.95 Aligned_cols=234 Identities=7% Similarity=0.003 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC----HHHHHHH
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----GELWVRS 98 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~----~~lW~~y 98 (565)
.+.+..++......|+++.+..+|++++...|.+..+|...+.... ..++.+.+...|++++. .|.. ...|...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567888888889999999999999999999999999998887544 45578889999999999 4433 3446665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 008442 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (565)
Q Consensus 99 i~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~ 178 (565)
.. +....+..+++...|++++...+.....+..+-..+. ...-+++|+.++...+...
T Consensus 81 g~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 81 GK-ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY---------------------NKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHGGGCCSS
T ss_pred HH-HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHhhcC
Confidence 55 3344688999999999999865543333332222221 1234666777777777665
Q ss_pred chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcccCCCC--c
Q 008442 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH---INEARSIYKRCYSKRFTGTG--S 253 (565)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~---~~~aR~i~~~al~~~~~~~~--~ 253 (565)
+.....|...+......+ ++++|..+|+++++..|+....|...+......++ .+.|...|++++......+. .
T Consensus 139 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217 (272)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence 556667777773333445 89999999999999999998888888888877787 88899999999874211111 1
Q ss_pred H---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 254 E---DICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 254 ~---~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
. .++.....+-...|+.+.+...+++++
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 233444445556788887777776654
No 238
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.13 E-value=2e-08 Score=96.09 Aligned_cols=217 Identities=11% Similarity=0.008 Sum_probs=156.3
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.++...+..++.....|...+......|+.+.+...|++++...|.+..+|...+..... .+..+.+...|++
T Consensus 24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHH
Confidence 456677777765443456788899999999999999999999999999999999999998876554 4578889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
|+...|....+|......+ ...+..+++...|++++...+......+ +.... .. . .++......
T Consensus 103 al~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~--~~-~----------~~~~~A~~~ 166 (275)
T 1xnf_A 103 VLELDPTYNYAHLNRGIAL-YYGGRDKLAQDDLLAFYQDDPNDPFRSL--WLYLA--EQ-K----------LDEKQAKEV 166 (275)
T ss_dssp HHHHCTTCTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHH--HH-H----------HCHHHHHHH
T ss_pred HHhcCccccHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCChHHHH--HHHHH--HH-h----------cCHHHHHHH
Confidence 9999999888888877644 4478899999999999986554332111 11111 00 0 133334444
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHcCChHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----AMLEAWQSYISMEIELDHINEARSI 239 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~----~~~~lw~~yi~~e~~~~~~~~aR~i 239 (565)
|.+++... +.....+. .+.+....+ +.+.|...+++++...+ ....+|...+.+....|+++.|...
T Consensus 167 ~~~~~~~~-------~~~~~~~~-~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 167 LKQHFEKS-------DKEQWGWN-IVEFYLGNI-SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHS-------CCCSTHHH-HHHHHTTSS-CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcC-------CcchHHHH-HHHHHHHhc-CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 44443321 11112222 334444455 67889999999887654 3368999999999999999999999
Q ss_pred HHHHHhc
Q 008442 240 YKRCYSK 246 (565)
Q Consensus 240 ~~~al~~ 246 (565)
|++++..
T Consensus 238 ~~~al~~ 244 (275)
T 1xnf_A 238 FKLAVAN 244 (275)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999973
No 239
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.12 E-value=5.6e-09 Score=97.90 Aligned_cols=200 Identities=9% Similarity=0.036 Sum_probs=148.7
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.++...|. +...|...+......|+++.+..+|++++...|.+..+|..++..... .++.+.+..+|++
T Consensus 42 A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 42 AAEAFTKAIEENKE----DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFEK 116 (243)
T ss_dssp CCTTHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 55678888887776 678899999988899999999999999999999999999998876554 4477889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~ 163 (565)
++...|....+|......+ ...+..+++...|++++...+.....+..+-..+... .++..+...
T Consensus 117 ~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~ 181 (243)
T 2q7f_A 117 ALRAGMENGDLFYMLGTVL-VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--------------GMLDEALSQ 181 (243)
T ss_dssp HHHHTCCSHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------TCCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--------------CCHHHHHHH
Confidence 9999999999998877644 4478899999999999986554333332222222100 133344455
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 008442 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~ 231 (565)
|.+++.. .+.....+..++.++...+ +++.|..+|++++...|++..+|..+..+....+
T Consensus 182 ~~~~~~~-------~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 182 FAAVTEQ-------DPGHADAFYNAGVTYAYKE-NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHH-------CTTCHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHh-------CcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 5544443 3334557778888888888 9999999999999999999999888777665443
No 240
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.12 E-value=1.3e-08 Score=94.40 Aligned_cols=210 Identities=11% Similarity=0.010 Sum_probs=142.4
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHH
Q 008442 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (565)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~ 132 (565)
.|.+...|......+...+ ..+.+...|++|+...|.+...|......+ ...+..+++...|++++...+.....+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALG-RYDAALTLFERALKENPQDPEALYWLARTQ-LKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3778889998887665444 678899999999999999999998877644 44788999999999999877665544444
Q ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 133 ~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
+-..+.... .... +......-+++|+..+...+...+.....|...+.+....+ ++++|...|++++..
T Consensus 79 lg~~~~~~~----~~~~------~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 79 LSEAYVALY----RQAE------DRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG-ERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHH----HTCS------SHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----hhhh------hhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 333332110 0000 01112245666666666666555566678888888998888 999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008442 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (565)
Q Consensus 213 ~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k 279 (565)
. ++..+|...+......|+++.|...|++++.. . +....++......-...|+.+.....+.+
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--A-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--S-TTCHHHHHHHHHHHTC-------------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9 88999999999999999999999999999973 2 22335555455554555665555444433
No 241
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.11 E-value=6.8e-09 Score=109.04 Aligned_cols=250 Identities=9% Similarity=0.043 Sum_probs=183.1
Q ss_pred hhHHHHHHHh-----c--CCCC---ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch
Q 008442 4 ARAHLEEQIS-----R--QDLS---DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73 (565)
Q Consensus 4 ~R~~~E~~l~-----~--~~~~---~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~ 73 (565)
+...|+.++. . .|.. ++.....|...+......|+++.+..+|++++...|. ..+|...+.... ..+.
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~-~~~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA-DRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH-HCCC
Confidence 4556666666 2 3322 1456778998999888999999999999999999999 889888887554 4447
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchh
Q 008442 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (565)
Q Consensus 74 ~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~ 153 (565)
.+.+...|++++...|....+|......+ ...+..+++...|++++...+.....+..+-..+. .
T Consensus 286 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------~----- 350 (514)
T 2gw1_A 286 STEYYNYFDKALKLDSNNSSVYYHRGQMN-FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY---------R----- 350 (514)
T ss_dssp CTTGGGHHHHHHTTCTTCTHHHHHHHHHH-HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT---------T-----
T ss_pred HHHHHHHHHHHhhcCcCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH---------H-----
Confidence 77899999999999998888888877633 44678899999999999865543332222222111 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH------HHHHHHHHHH
Q 008442 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML------EAWQSYISME 227 (565)
Q Consensus 154 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~------~lw~~yi~~e 227 (565)
..++..+...|.+++.. .+.....+..++.+....+ +++.|..+|++++...|... .+|...+...
T Consensus 351 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRK-------FPEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp TTCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH-------cccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 01344445555555443 2333456777788888888 99999999999999876653 3889999998
Q ss_pred HH---cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 228 IE---LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 228 ~~---~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.. .|+++.|..+|++++.. .+.....+..........|+.+.+...+.+++
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88 99999999999999873 22344666666777778899888887777765
No 242
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.10 E-value=1.1e-08 Score=103.46 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=161.0
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC-chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~-~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
++-..|+.+|..+|. +..+|..........|. .+.+...|++||..+|.+..+|......+.. .+..+.+...|
T Consensus 115 ~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~~~ 189 (382)
T 2h6f_A 115 RAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFI 189 (382)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred HHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence 356778888888887 88999999999888996 9999999999999999999999998875554 45778899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~ 161 (565)
++||...|.+...|......+ ...+..+++...|+++|...+.....+..+...+... .+..+ .
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~-~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l-------~~~~~------e-- 253 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVI-QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT-------TGYND------R-- 253 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH-HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------TCSCS------H--
T ss_pred HHHHHhCccCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------cCcch------H--
Confidence 999999999999998866544 3467788999999999987766444443333332210 01100 0
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcC--------C
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK-DMVSARGVWERLLKISGAMLEAWQSYISMEIELD--------H 232 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~-~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~--------~ 232 (565)
.++..++.++...+...+.....|...+.+....+. +.++|...++++ ...|++..++...++++...+ +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 112222333333333344455677777776666542 578888888887 668888888888888876653 2
Q ss_pred -hHHHHHHHHHH-Hh
Q 008442 233 -INEARSIYKRC-YS 245 (565)
Q Consensus 233 -~~~aR~i~~~a-l~ 245 (565)
++.|.++|+++ +.
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 58999999999 75
No 243
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.09 E-value=9.4e-09 Score=98.33 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=163.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHH----HHHHHHHHHHhcchhhHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL----WLDYTQYLDKTLKVGNVVR 78 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~l----W~~Y~~~l~~~~~~~~~~~ 78 (565)
++...|+.++...|. +...|..........|+++.+...|++++. .|.+..+ |...+.... ..+..+.+.
T Consensus 21 ~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~ 94 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM-KKGQDSLAI 94 (272)
T ss_dssp HHHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH-HcccHHHHH
Confidence 467788888888876 566888888888889999999999999999 5555444 777776554 445788899
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHH-HHHHHHHHHHhhccccchhhhhH
Q 008442 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSGEVEGVLDY 157 (565)
Q Consensus 79 ~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~e~~~~~ 157 (565)
..|++|+...|....+|......+ ...+..+++...|++++...+.....+..+- ..+.. .++
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------------~~~ 158 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYF-YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN---------------KEY 158 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHH-HHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT---------------TCH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHH-HHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH---------------HHH
Confidence 999999999999989998877634 4478999999999999987665444443333 22210 134
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHc---cc-----hHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKIS---GA-----MLEAWQSYISM 226 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~e~~l~~~---~~-----~~~lw~~yi~~ 226 (565)
..+...|++++.. .+.....+...+.+....+ + .+.|...|++++... ++ ...+|.....+
T Consensus 159 ~~A~~~~~~a~~~-------~p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 159 VKADSSFVKVLEL-------KPNIYIGYLWRARANAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHS-TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------CccchHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 4455555555543 2333455556666666666 5 778999999999874 44 23688888888
Q ss_pred HHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Q 008442 227 EIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE 264 (565)
....|+++.|...|++++.. . +.....++....+.
T Consensus 231 ~~~~~~~~~A~~~~~~al~~--~-p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILAL--D-PTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--C-TTCHHHHHHHC---
T ss_pred HHHcCCHHHHHHHHHHHHhc--C-ccHHHHHHHhhhhh
Confidence 89999999999999999973 2 23445555444333
No 244
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.09 E-value=4e-08 Score=103.92 Aligned_cols=252 Identities=9% Similarity=-0.036 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
....|..........|+++.+..+|++++...|.++.+|...+..... .++.+.+...|++++...|.....|......
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS-TGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 456788888888899999999999999999999999999999876554 4478889999999999999999999887764
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccHHHHH-------------H------------------------------------
Q 008442 102 LERSRASEEEISTVFEKSLLCAFSTFEEYL-------------D------------------------------------ 132 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~~~~~~~-------------~------------------------------------ 132 (565)
+ ...+..+++...|+ ++...+.....++ .
T Consensus 103 ~-~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 103 N-ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp H-HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred H-HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 4 44677888888875 5532111000000 0
Q ss_pred ---------------HHHHHH---------------HHHHH-----Hhhc--cccchh-------hh---hHHHHHHHHH
Q 008442 133 ---------------LFLTRI---------------DGLRR-----RILF--SGEVEG-------VL---DYSLIRETFQ 165 (565)
Q Consensus 133 ---------------~~~~~~---------------~~~~r-----~~~~--~~~~e~-------~~---~~~~~~~~~~ 165 (565)
+..... ++... ..+. ....+. +. ........++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 000000 00000 0000 000000 00 0000112235
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+|+.++...+...+. ...+...+.+....+ +++.|..+|++++...|+...+|...+.+....|+++.|..+|++++.
T Consensus 261 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-PNSYIFLALTLADKE-NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhc-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666666665554444 566777777777777 999999999999999999999999999999999999999999999987
Q ss_pred cccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
. ..+ ...+|......-...|+.+.+...+.+++
T Consensus 339 ~--~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 339 L--NPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp H--CTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 222 23566666666667899888887777665
No 245
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.07 E-value=2.2e-10 Score=112.24 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=62.9
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCccc---CCe--
Q 008442 389 TDECTAFLSN--INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMF---LGK-- 460 (565)
Q Consensus 389 ~~~~~l~V~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~---~g~-- 460 (565)
....+|||+| |++.+++++|+++|++||.|.+|.++. +||||||+|.+.++|++|+. |||..+ .|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3457999999 578999999999999999999987743 46999999999999999998 899886 355
Q ss_pred EEEEeecC
Q 008442 461 KLSIARSN 468 (565)
Q Consensus 461 ~l~v~~a~ 468 (565)
+|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777763
No 246
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.07 E-value=1.4e-08 Score=106.17 Aligned_cols=199 Identities=11% Similarity=-0.003 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHhcCCc-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~-~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
+...|..........+++ +.+...|+++|...|.+...|...+...... ++.+.+...|++|+...|. ...|.....
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 567777777777777788 8888888888888888888888777655443 3667788888888887777 566666554
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 008442 101 SLERSR---------ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYL 171 (565)
Q Consensus 101 ~le~~~---------~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l 171 (565)
+.... +..+++...|++|+...+.....+..+-..+... ++
T Consensus 179 -~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------------------------~~ 228 (474)
T 4abn_A 179 -VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL-----------------------------YF 228 (474)
T ss_dssp -HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------------------------HH
T ss_pred -HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------------------------HH
Confidence 33334 5567777777777765444332222221111100 00
Q ss_pred HhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 008442 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (565)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~---~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~ 248 (565)
. .-...+ ++++|...|++++...| ....+|..++..+...|+++.|...|++++..
T Consensus 229 ~------------------~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 287 (474)
T 4abn_A 229 N------------------TGQNPK-ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-- 287 (474)
T ss_dssp H------------------TTCCHH-HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred h------------------hccccc-hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 0 000012 56677777777777776 67777777777777777777777777777752
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHH
Q 008442 249 TGTGSEDICHAWLRFEREYGTLEDFD 274 (565)
Q Consensus 249 ~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (565)
..+ ....|..........|..+.+.
T Consensus 288 ~p~-~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 288 DPA-WPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2234444444444444444333
No 247
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=7.1e-10 Score=84.50 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCC----CCCH----HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeE
Q 008442 390 DECTAFLSNINL----KATY----EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKK 461 (565)
Q Consensus 390 ~~~~l~V~nl~~----~~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~ 461 (565)
...||+|..+|. +.-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+.|||..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 357999988772 3333 6799999999999999998764 89999999999999999999999999
Q ss_pred EEEeecCCC
Q 008442 462 LSIARSNPK 470 (565)
Q Consensus 462 l~v~~a~~~ 470 (565)
|+|..+.|.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998875
No 248
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.1e-07 Score=99.63 Aligned_cols=253 Identities=9% Similarity=0.027 Sum_probs=167.5
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
+....|..........|+++.+..+|++++...| +..+|...+..... .+..+.+...|++++...|.....|.....
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVS-VGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHH-HhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 3567788888888889999999999999999998 68888887765544 447788999999999999999988888776
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHH-Hhh------------------------------
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFST---FEEYLDLFLTRIDGLRR-RIL------------------------------ 146 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~~---~~~~~~~~~~~~~~~~r-~~~------------------------------ 146 (565)
.+ ...+..+++...|++++...+.. ....+...........- ..+
T Consensus 82 ~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 AN-EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HH-HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 44 44688999999999998754321 11111111110000000 000
Q ss_pred ----------ccc-----------cchh-------------hhhHHHHHHHHHHHHHHHHhhhc-C------CchhHHHH
Q 008442 147 ----------FSG-----------EVEG-------------VLDYSLIRETFQRASDYLSEQMK-N------TDGLLRLY 185 (565)
Q Consensus 147 ----------~~~-----------~~e~-------------~~~~~~~~~~~~~a~~~l~~~~~-~------~~~~~~l~ 185 (565)
... .... ..++..+...|.+++..+...+. . .+.....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 000 0000 01233333444444442211110 0 13345566
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q 008442 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (565)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~ 265 (565)
...+.+....+ +++.|..+|++++...|. ..+|...+......|+++.|..+|++++.. . +....+|........
T Consensus 241 ~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 241 EHTGIFKFLKN-DPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--D-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--C-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--C-cCCHHHHHHHHHHHH
Confidence 67777888888 999999999999999888 888999999888899999999999999873 1 223356666666666
Q ss_pred HhCCHHHHHHHHHHHh
Q 008442 266 EYGTLEDFDHSVQKVT 281 (565)
Q Consensus 266 ~~G~~~~~~~~~~k~~ 281 (565)
..|+.+.+...+.+++
T Consensus 316 ~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HTTCTTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 7787777776666654
No 249
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.8e-08 Score=93.80 Aligned_cols=206 Identities=10% Similarity=-0.007 Sum_probs=153.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcchhh
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKVGN 75 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~-------~~lW~~Y~~~l~~~~~~~~ 75 (565)
++...|+.++... . +...|..........|+.+.+...|++++...|.+ ..+|...+.... ..++.+
T Consensus 23 ~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 96 (258)
T 3uq3_A 23 EAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLK 96 (258)
T ss_dssp HHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHH
Confidence 3567788888777 4 56788888888889999999999999999988876 678877776554 445778
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhh
Q 008442 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (565)
Q Consensus 76 ~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~ 155 (565)
.+...|++++...|. ..++.. .+..+++...|++++...+.....+..+-..+.. . .
T Consensus 97 ~A~~~~~~a~~~~~~-~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~ 153 (258)
T 3uq3_A 97 KTIEYYQKSLTEHRT-ADILTK--------LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT--------K------S 153 (258)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHH--------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------T------T
T ss_pred HHHHHHHHHHhcCch-hHHHHH--------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH--------h------c
Confidence 899999999998876 232211 2446788889999887654433322222221110 0 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~ 235 (565)
++..+...|.+++.. .+....++...+.+....+ +++.|..+|++++...|+...+|...+......|+++.
T Consensus 154 ~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR-------APEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444455544443 3344567777888888888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 008442 236 ARSIYKRCYS 245 (565)
Q Consensus 236 aR~i~~~al~ 245 (565)
|...|++++.
T Consensus 226 A~~~~~~a~~ 235 (258)
T 3uq3_A 226 ALETLDAART 235 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 250
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.00 E-value=1.2e-07 Score=87.25 Aligned_cols=206 Identities=10% Similarity=-0.022 Sum_probs=147.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHH
Q 008442 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (565)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~ 131 (565)
..|.+..+|...+...... ++.+.+..+|++++...|....+|......+ ...+..+++...|++++...+.....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRG-QDYRQATASIEDALKSDPKNELAWLVRAEIY-QYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 3566778888887765544 4778899999999999999988888877634 4478899999999999986554433332
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 132 ~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
.+-..+. .. ..++..+...|++++. ....+....++...+.+....+ +++.|..+|++++.
T Consensus 81 ~l~~~~~--------~~-----~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 81 NYGWFLC--------GR-----LNRPAESMAYFDKALA-----DPTYPTPYIANLNKGICSAKQG-QFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHH--------TT-----TCCHHHHHHHHHHHHT-----STTCSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHH--------Hh-----cCcHHHHHHHHHHHHc-----CcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 2222211 00 0133444455554443 1123334567777888888888 99999999999999
Q ss_pred HccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 212 ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 212 ~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
..|.+..+|...+......|+++.|..+|++++.. .+ ......+.....+....|+.+.+...+..+
T Consensus 142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-VE-VLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999873 22 134455666677778889888776554443
No 251
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.00 E-value=2.5e-07 Score=87.24 Aligned_cols=202 Identities=9% Similarity=0.011 Sum_probs=147.3
Q ss_pred CCCC-HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHH
Q 008442 53 FPVS-SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (565)
Q Consensus 53 ~p~~-~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~ 131 (565)
.|.. ..+|...+..... .++.+.+..+|++++...|....+|......+ ...+..+++...|++++...+.....+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQ-RGNTEQAKVPLRKALEIDPSSADAHAALAVVF-QTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 3443 5677777765554 34678899999999999999888888877634 4478899999999999986554333332
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhc--CCchhHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008442 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK--NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERL 209 (565)
Q Consensus 132 ~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~ 209 (565)
.+-..+. ....+++|+.++...+. ..+....++..++.+....+ +++.|..+|+++
T Consensus 110 ~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~ 167 (252)
T 2ho1_A 110 NYGGFLY---------------------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK-KPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 2222221 01223344444444443 34445667777888888888 999999999999
Q ss_pred HHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 210 LKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 210 l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+...|....+|..++.+....|+++.|..+|++++.. .+.....+.....+....|+.+.+...+.++.
T Consensus 168 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 168 LRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999873 22345666667777778899888877766653
No 252
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=1.5e-07 Score=97.86 Aligned_cols=236 Identities=11% Similarity=0.019 Sum_probs=158.6
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHH---hcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcchhhH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQ---SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK---TLKVGNV 76 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~---~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~---~~~~~~~ 76 (565)
+|...|+.+|...|. +...|..+..... ..+..+.+...|++||..+|.+..+|..+...+.. ..+..+.
T Consensus 156 ~A~~~~~kal~~~p~----~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 156 RAKVCFEKALEKKPK----NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 366778888887776 6677766665532 34666778889999999999999888776543322 2234567
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q 008442 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (565)
Q Consensus 77 ~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~ 156 (565)
+..+|++|+...|....+|..... +-...+..+++...|++|+...+.....+..+-.++............ .....
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~--~~~~~ 308 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAK-FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE--NGMYG 308 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHhCccHHHHHHHHHH-HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH--HHHHH
Confidence 889999999999998888877665 344478889999999999987666555444443333221111000000 00012
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH---HHHHHHHHHH-HHcCC
Q 008442 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISME-IELDH 232 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~---~lw~~yi~~e-~~~~~ 232 (565)
.......++.|+..+.......+.....+...+.+....+ ++++|..+|++++...++.. .++..|..+. ...|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD-QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 2334455667777776665544455556677788888888 99999999999999865543 3566777664 46789
Q ss_pred hHHHHHHHHHHHhc
Q 008442 233 INEARSIYKRCYSK 246 (565)
Q Consensus 233 ~~~aR~i~~~al~~ 246 (565)
.+.|...|.+++..
T Consensus 388 ~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 388 EDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999973
No 253
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.98 E-value=2.4e-07 Score=90.07 Aligned_cols=211 Identities=12% Similarity=0.014 Sum_probs=114.5
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 8 ~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~--~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
|+.++......++........++.+....++.+.+...|++.+.. .|.+..+|...+..+.. .+..+.+..+|++
T Consensus 50 ~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~-~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 50 YGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY-DQNPDAALRTLHQ-- 126 (291)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH-TTCHHHHHHHHTT--
T ss_pred HHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH-CCCHHHHHHHHhC--
Confidence 344444332234445556666666666666666777777776654 46677666666554433 3355556666666
Q ss_pred HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 008442 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~ 165 (565)
|.+..+|...+..+. ..+..+++...|++++...+.... ..+...++.... .. .++..+...|+
T Consensus 127 ---~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~--~~l~~a~~~l~~-----~~-----~~~~eA~~~~~ 190 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATL--TQLATAWVSLAA-----GG-----EKLQDAYYIFQ 190 (291)
T ss_dssp ---CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHH-----CT-----THHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHH--HHHHHHHHHHHh-----Cc-----hHHHHHHHHHH
Confidence 556666665554332 356667777777777654433221 111111211110 00 02222333333
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Q 008442 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE-ARSIYKRCY 244 (565)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~-aR~i~~~al 244 (565)
+++. ..+....+|...+......+ ++++|...|++++...|++...|..++.+....|+.+. +..++++++
T Consensus 191 ~~l~-------~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 191 EMAD-------KCSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHH-------HSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHH-------hCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3332 22334445555666666666 77777777777777777777777777766666666543 566667666
Q ss_pred h
Q 008442 245 S 245 (565)
Q Consensus 245 ~ 245 (565)
.
T Consensus 263 ~ 263 (291)
T 3mkr_A 263 D 263 (291)
T ss_dssp H
T ss_pred H
Confidence 5
No 254
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=3.8e-08 Score=107.61 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=141.8
Q ss_pred CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 18 ~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
+.|++.++|..........|+.+.+...|++||...|.+...|..+...+.. .+..+.+...|++||+..|.....|..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4567899999999999999999999999999999999999999999886654 447788999999999999999999988
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 008442 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~ 177 (565)
....+ ...+..+++...|++|+...+.
T Consensus 83 Lg~~l-~~~g~~~~A~~~~~kAl~l~P~---------------------------------------------------- 109 (723)
T 4gyw_A 83 MGNTL-KEMQDVQGALQCYTRAIQINPA---------------------------------------------------- 109 (723)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHHCTT----------------------------------------------------
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCC----------------------------------------------------
Confidence 77644 3467788888888887754332
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
....|..++.++...+ ++++|...|+++++..|++...|..++......|+++.|.+.|++++.
T Consensus 110 ---~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 110 ---FADAHSNLASIHKDSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ---CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 1223334555666777 999999999999999999999999999999999999999999999976
No 255
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.94 E-value=1.1e-09 Score=89.50 Aligned_cols=76 Identities=24% Similarity=0.195 Sum_probs=62.6
Q ss_pred CCeEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCC
Q 008442 391 ECTAFLSNINLKA----------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLG 459 (565)
Q Consensus 391 ~~~l~V~nl~~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g 459 (565)
.+.|.+.|+=..- -+++|++.|++||.|.+|.|..+. ++|||||+|.+.++|.+|+. |||..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4567777773221 135889999999999999986542 58999999999999999998 89999999
Q ss_pred eEEEEeecCCC
Q 008442 460 KKLSIARSNPK 470 (565)
Q Consensus 460 ~~l~v~~a~~~ 470 (565)
|.|.|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998643
No 256
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.89 E-value=1.3e-07 Score=98.94 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-NVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~-~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~r 118 (565)
+.+...++.++...|.+..+|......+.. .++. +.+...|++|+...|.....|......+ ...++.+++...|++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY-WKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 445667788888889999999999886554 4477 8899999999999999999998877634 446889999999999
Q ss_pred HHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCC
Q 008442 119 SLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD 198 (565)
Q Consensus 119 al~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~ 198 (565)
|+...+. ...+..+-..+. . .... ..+...+ +
T Consensus 163 al~~~p~-~~~~~~lg~~~~---------------------------------~--~~~~-----------~~~~~~g-~ 194 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLR---------------------------------Q--LQTD-----------SGDEHSR-H 194 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHT---------------------------------T--CCCS-----------CHHHHHH-H
T ss_pred HHhhCCC-HHHHHHHHHHHH---------------------------------H--hccC-----------Chhhhhh-h
Confidence 9986654 221111111100 0 0000 0112334 7
Q ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcccCC-CCcHHHHHHHHHHHHHhCC
Q 008442 199 MVSARGVWERLLKISGAMLEAWQSYISMEIEL--------DHINEARSIYKRCYSKRFTG-TGSEDICHAWLRFEREYGT 269 (565)
Q Consensus 199 ~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~--------~~~~~aR~i~~~al~~~~~~-~~~~~i~~~~~~fE~~~G~ 269 (565)
+++|...|++++...|++..+|..++...... |+++.|...|++++... +. .....+|..........|+
T Consensus 195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999999999888 99999999999999731 10 0234666666677777899
Q ss_pred HHHHHHHHHHHh
Q 008442 270 LEDFDHSVQKVT 281 (565)
Q Consensus 270 ~~~~~~~~~k~~ 281 (565)
.+.+...+.+++
T Consensus 274 ~~~A~~~~~~al 285 (474)
T 4abn_A 274 YGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888888775
No 257
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.88 E-value=9.8e-07 Score=89.75 Aligned_cols=261 Identities=11% Similarity=-0.054 Sum_probs=161.6
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcchhhHHHHHHHHHHHcC------CC
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD----LWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PW 90 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~----lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~------p~ 90 (565)
.....+..........|+++.+..+|++++...|.+.. +|...+.... ..++.+.+...|++|+..+ |.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34455666666667789999999999999999999874 5666655444 3447788999999999863 33
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHH--HHhhccc-cchhhhhHHHHH
Q 008442 91 VGELWVRSLLSLERSRASEEEISTVFEKSLLCAF------STFEEYLDLFLTRIDGLR--RRILFSG-EVEGVLDYSLIR 161 (565)
Q Consensus 91 ~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~------~~~~~~~~~~~~~~~~~~--r~~~~~~-~~e~~~~~~~~~ 161 (565)
...+|..... +....+..+++...|++++.... .....+..+-..+...-. +...... ..+....+..+.
T Consensus 125 ~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 125 EAKSSGNLGN-TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 3345555444 33446889999999999986421 111111111111111100 0000000 000011234444
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch------HHHHHHHHHHHHHcCChHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINE 235 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~~~~~~~ 235 (565)
..|.+++.+.... ...+.....+...+.+....+ +++.|...|++++...+.. ..+|...+.+....|+++.
T Consensus 204 ~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 204 EFYQENLKLMRDL-GDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 5555555544322 112223456667788888888 9999999999999875432 2377888888889999999
Q ss_pred HHHHHHHHHhcccCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHhhHHH
Q 008442 236 ARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (565)
Q Consensus 236 aR~i~~~al~~~~~~~~~~---~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~ 285 (565)
|..+|++++...-....+. .++..........|+.+.+...+++++....
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999987421122222 3444445566677999888888887765543
No 258
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.86 E-value=3.3e-07 Score=93.33 Aligned_cols=270 Identities=11% Similarity=-0.052 Sum_probs=172.3
Q ss_pred hhhHHHHHHHhcCCCCChH-hHHHHHHHHHHHHhcCCchhHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcchhh
Q 008442 3 NARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITD------FPVSSDLWLDYTQYLDKTLKVGN 75 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~-~~~~W~~yi~~e~~~~~~~~~~~lyERal~~------~p~~~~lW~~Y~~~l~~~~~~~~ 75 (565)
++...|+.++...+. ++. ...+|..........|+++.+...|++++.. .|....+|...+.... ..++.+
T Consensus 66 ~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 143 (411)
T 4a1s_A 66 AGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGRFD 143 (411)
T ss_dssp HHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCHH
Confidence 467788999988765 222 2357888888888889999999999999987 3555567777666544 444778
Q ss_pred HHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhccc--ccHHHH
Q 008442 76 VVRDVYSRATKNCP------WVGELWVRSLLSLERSRAS-----------------EEEISTVFEKSLLCAF--STFEEY 130 (565)
Q Consensus 76 ~~~~v~erAl~~~p------~~~~lW~~yi~~le~~~~~-----------------~~~~~~if~ral~~~~--~~~~~~ 130 (565)
.+...|++|+...+ ....+|..... +....+. .+.+...|++++.... ......
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGN-VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999998642 22334444333 2222345 6677777777765321 111111
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008442 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (565)
Q Consensus 131 ~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (565)
...+........ . ..++......|.+++....... ........+...+.++...+ ++++|...|++++
T Consensus 223 ~~~~~~la~~~~---~-------~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al 290 (411)
T 4a1s_A 223 GRACGNLGNTYY---L-------LGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLG-QFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHH---H-------TTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---H-------cCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 111111111110 0 0145556667777776654321 11222345666778888888 9999999999999
Q ss_pred HHccc------hHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 211 KISGA------MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 211 ~~~~~------~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~---~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
...+. ...+|...+.+....|+++.|..+|++++...-....+. .++..+...-...|+.+.+...+.+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 87543 256888888899999999999999999986321112222 244445556667799998888888877
Q ss_pred hHHHHH
Q 008442 282 PRLEEL 287 (565)
Q Consensus 282 ~~~~~~ 287 (565)
....++
T Consensus 371 ~~~~~~ 376 (411)
T 4a1s_A 371 QLAXXX 376 (411)
T ss_dssp HHCCHH
T ss_pred HHHhhc
Confidence 655544
No 259
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.85 E-value=3.4e-07 Score=81.22 Aligned_cols=167 Identities=10% Similarity=-0.024 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
....|...+......|+++.+..+|++++...|.+..+|...+..... .++.+.+...|++++...|....+|......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 455677777777788999999999999999999999988888775544 4477789999999999989888888776653
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchh
Q 008442 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 181 (565)
+ ...+..+++...|++++...+. .
T Consensus 86 ~-~~~~~~~~A~~~~~~~~~~~~~-------------------------------------------------------~ 109 (186)
T 3as5_A 86 Y-VQVQKYDLAVPLLIKVAEANPI-------------------------------------------------------N 109 (186)
T ss_dssp H-HHHTCHHHHHHHHHHHHHHCTT-------------------------------------------------------C
T ss_pred H-HHhcCHHHHHHHHHHHHhcCcH-------------------------------------------------------h
Confidence 3 3356677777777766642211 1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
..++..++.+....+ +++.|..+|++++...|....+|...+......|+++.|..+|++++..
T Consensus 110 ~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 223344555566667 8999999999999999888999999999999999999999999999863
No 260
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.85 E-value=3.2e-07 Score=89.78 Aligned_cols=125 Identities=10% Similarity=0.026 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch------HHHHHHHHHHHHHc
Q 008442 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIEL 230 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~~ 230 (565)
+......|.+++...... .........+...+.+....+ +++.|..+|++++...+.. ..++...+......
T Consensus 199 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 344445555555544321 111122335566677777777 8999999999988764332 55777778888888
Q ss_pred CChHHHHHHHHHHHhcccCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 231 DHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 231 ~~~~~aR~i~~~al~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
|+++.|...|++++...-....+.. ++..........|+.+.+...+.+++..
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999998763211112222 3344445556678887777777666543
No 261
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1.5e-08 Score=82.83 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHH-c--CCcccCCeEE
Q 008442 388 FTDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVA-K--NKQMFLGKKL 462 (565)
Q Consensus 388 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~-~~~a~~a~~-~--~~~~~~g~~l 462 (565)
...++-|||+||+.+ ++.++|+.+|+.||.|..|.++.+.. .|||.|.+ +.+|..|+. + ++..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456899999999999 99999999999999999999987652 69999999 788998987 6 4678999988
Q ss_pred EEeecC
Q 008442 463 SIARSN 468 (565)
Q Consensus 463 ~v~~a~ 468 (565)
.+....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 262
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.83 E-value=5.5e-07 Score=91.08 Aligned_cols=129 Identities=11% Similarity=0.029 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch------HHHHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIE 229 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~ 229 (565)
++......|.+++....... ........+...+.++...+ +++.|..+|++++...+.. ..+|...+.....
T Consensus 202 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 34445555555555543311 11122345666778888888 9999999999999875433 5678888888899
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHH
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLEDFDHSVQKVTPRLEE 286 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~---~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~~ 286 (565)
.|+++.|...|++++...-....+. .++......-...|+.+.+...+.+++.....
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999986422222222 23444445556678988888888887655443
No 263
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=5.9e-07 Score=87.20 Aligned_cols=248 Identities=12% Similarity=0.063 Sum_probs=145.4
Q ss_pred CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC-
Q 008442 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAIT--------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC- 88 (565)
Q Consensus 18 ~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~--------~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~- 88 (565)
.++.....|..........|+++.+..+|++++. ..|....+|...+.... ..+..+.+...|++|+...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 3566788899999998999999999999999999 45666677777776544 3457788999999999864
Q ss_pred -------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q 008442 89 -------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (565)
Q Consensus 89 -------p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~-----~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~ 156 (565)
|....+|..... +....+..+++...|++++... ... ......+........ . ..+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~----~------~~~ 168 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAV-LYGKRGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQ----N------QGK 168 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH----T------TTC
T ss_pred HHhCCCChHHHHHHHHHHH-HHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHH----H------cCC
Confidence 333345555444 4445688999999999998642 111 111111111111110 0 125
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc---------hHHHHHHHHHH
Q 008442 157 YSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---------MLEAWQSYISM 226 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~---------~~~lw~~yi~~ 226 (565)
+..+...|.+++..+...... .+.....+...+.++...+ ++++|..+|++++...+. ...+|.....+
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 566777788887776554332 3334566777888888888 999999999999975321 11123222222
Q ss_pred H------HHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 227 E------IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 227 e------~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
. ...+.+..+...+..++.. .+....+|......-...|+.+.+...+++++.
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVD---SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC-------CCSCCCC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2223444444455555431 111223344444445555666666666655543
No 264
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.77 E-value=1.3e-06 Score=81.13 Aligned_cols=200 Identities=8% Similarity=-0.062 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p-~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
+...|..........|+.+.+...|++++...| .+..+|...+. +....++.+.+...|++|+...|....+|.....
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGV-CADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHH-HHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 347788888888889999999999999999998 88888887554 4445567888999999999999998899988776
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 180 (565)
.+ ...+..+++...|++++...+........+...+...- .......-+++|+.++...+...+.
T Consensus 85 ~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 85 AY-RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG--------------QKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HH-HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--------------HHHHHhccHHHHHHHHHHHHhcCCC
Confidence 44 44788999999999999865543322111111111100 0001113355555666555555555
Q ss_pred --hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 181 --LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 181 --~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
....|...+.+.... +..+++++....+.....+. .......+.++.|...|++++.
T Consensus 150 ~~~~~~~~~l~~~~~~~------~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNN------GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH------HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555332 33445555554333322221 1123344567889999999987
No 265
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.1e-08 Score=78.35 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCC------CCH---HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCe
Q 008442 390 DECTAFLSNINLK------ATY---EDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGK 460 (565)
Q Consensus 390 ~~~~l~V~nl~~~------~~~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~ 460 (565)
...||+|..++.. .++ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||.|+|..++||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 3579999988743 232 5688999999999999998874 9999999999999999999999999
Q ss_pred EEEEeecCC
Q 008442 461 KLSIARSNP 469 (565)
Q Consensus 461 ~l~v~~a~~ 469 (565)
.|+|....|
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999987543
No 266
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.73 E-value=7.8e-07 Score=79.51 Aligned_cols=156 Identities=11% Similarity=0.016 Sum_probs=122.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|..+|. +...|..........|+.+.+...|++++...|.+...|..+....... ++.+.+...++
T Consensus 23 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~ 97 (184)
T 3vtx_A 23 GAIRAYKKVLKADPN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI-DEKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467889999998887 8899999999999999999999999999999999999999988765544 46778999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~ 162 (565)
+|+...|....+|......+ ...+..+++...|++++...+.
T Consensus 98 ~a~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~~l~~~p~------------------------------------- 139 (184)
T 3vtx_A 98 RAIALNTVYADAYYKLGLVY-DSMGEHDKAIEAYEKTISIKPG------------------------------------- 139 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-------------------------------------
T ss_pred HHHHhCccchHHHHHHHHHH-HHhCCchhHHHHHHHHHHhcch-------------------------------------
Confidence 99999999998888776533 3367777787777777753322
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw 220 (565)
....|...+.++...+ ++++|...|+++|+..|++...+
T Consensus 140 ------------------~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 140 ------------------FIRAYQSIGLAYEGKG-LRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp ------------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTHHHHHHC
T ss_pred ------------------hhhHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCccCHHHH
Confidence 1223444455556667 88888888888888877765443
No 267
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.72 E-value=5.1e-07 Score=86.06 Aligned_cols=209 Identities=11% Similarity=0.013 Sum_probs=137.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...|. +...|...+......|+.+.+...|++++...|.+..+|...+..+.. .++.+.+..+|+
T Consensus 61 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 135 (275)
T 1xnf_A 61 LARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 366788888888876 788999999999999999999999999999999999999999886554 457888999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~ 162 (565)
+++...|.....+..... . ...+..+++...|.+++...+.....+. +...+ . ... +......
T Consensus 136 ~a~~~~~~~~~~~~~~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~--------~-~~~-----~~~~a~~ 198 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYL-A-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFY--------L-GNI-----SEQTLME 198 (275)
T ss_dssp HHHHHCTTCHHHHHHHHH-H-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHH--------T-TSS-----CHHHHHH
T ss_pred HHHHhCCCChHHHHHHHH-H-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHH--------H-Hhc-----CHHHHHH
Confidence 999999987644333222 2 2347789999999998875433211111 00000 0 000 1112222
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~ 240 (565)
.+.+++... ....+....++...+.++...+ +++.|...|++++...|++.. .+.......|+++.|.+.|
T Consensus 199 ~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDN---TSLAEHLSETNFYLGKYYLSLG-DLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSH---HHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHhccc---ccccccccHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 233222211 1001122467777888888888 999999999999999886533 2333344455666655544
No 268
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.69 E-value=8.2e-06 Score=79.57 Aligned_cols=259 Identities=9% Similarity=-0.076 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC------CCH
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP------WVG 92 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p------~~~ 92 (565)
...|..........|+++.+..+|++++...|.+. .+|...+.... ..++.+.+...|++|+...+ ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34566666667788999999999999999999985 45555555443 34577889999999987532 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhc---cc-------cchhhhhHHHH
Q 008442 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILF---SG-------EVEGVLDYSLI 160 (565)
Q Consensus 93 ~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~---~~-------~~e~~~~~~~~ 160 (565)
.+|..... +....+..+++...|++++..... ........+..........-.. .. ..+....+...
T Consensus 84 ~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGN-TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34444443 334468899999999999864221 1111111121111111111000 00 00000113334
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHcCChH
Q 008442 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEAWQSYISMEIELDHIN 234 (565)
Q Consensus 161 ~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~------~~~lw~~yi~~e~~~~~~~ 234 (565)
...|.+++...... ...+.....+...+.+....+ +++.|...|++++...+. ...+|...+......|+++
T Consensus 163 ~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 44455444443321 112223445666777888888 999999999999987432 1347888888888999999
Q ss_pred HHHHHHHHHHhcccCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHhhHHH
Q 008442 235 EARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (565)
Q Consensus 235 ~aR~i~~~al~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~ 285 (565)
.|..+|++++........+.. ++..........|+.+.+...+.+++....
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999864222222322 334444556677998888888877765443
No 269
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.68 E-value=1.5e-05 Score=76.06 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=149.3
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhHHHHHHHHHHHcCCCCHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWV 96 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~v~erAl~~~p~~~~lW~ 96 (565)
+.+...|..........++++.+...|++++. |.+...|.......... .++.+.+...|++|+... ....|.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 34677888888888888999999999999999 67888888877655430 457788999999999864 556665
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 97 RSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 97 ~yi~~le~---~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
.....+.. ..++.+++...|++|+..... ..+..+-..+.. ...+ ..++......|+++++.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~--------~~~~--~~~~~~A~~~~~~a~~~--- 143 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHD--------GKVV--TRDFKKAVEYFTKACDL--- 143 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH--------CSSS--CCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHc--------CCCc--ccCHHHHHHHHHHHHhc---
Confidence 55443322 167889999999999976422 222222222210 0000 01444455555555442
Q ss_pred hhcCCchhHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 008442 174 QMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYS 245 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~----~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~----~~~~~~aR~i~~~al~ 245 (565)
.+ ...+..++.+... .+ ++++|...|++++... ....+.....+... .++++.|...|++++.
T Consensus 144 ----~~--~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 144 ----ND--GDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp ----TC--HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred ----Cc--HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 22 2344555666666 56 9999999999999873 46777788888888 8999999999999987
Q ss_pred cccCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Q 008442 246 KRFTGTGSEDICHAWLRFERE----YGTLEDFDHSVQKV 280 (565)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~----~G~~~~~~~~~~k~ 280 (565)
. .+...+.....+-.. .|+.+.+...++++
T Consensus 215 ~-----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 215 L-----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp T-----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 3 123333333333333 45666555555554
No 270
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.67 E-value=4.4e-06 Score=86.68 Aligned_cols=126 Identities=11% Similarity=-0.001 Sum_probs=81.6
Q ss_pred hhHHHHHHHhcC-----CCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCC--------CCHHHHHHHHH-HHHH
Q 008442 4 ARAHLEEQISRQ-----DLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP--------VSSDLWLDYTQ-YLDK 69 (565)
Q Consensus 4 ~R~~~E~~l~~~-----~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p--------~~~~lW~~Y~~-~l~~ 69 (565)
|...|+.++.-. ...++.....|..+.......|+.+.+...|++++..++ ....++..... ++..
T Consensus 70 Al~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (472)
T 4g1t_A 70 ALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC 149 (472)
T ss_dssp HHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHH
Confidence 455666665321 111233566788888777788999999999999987532 33445544322 2222
Q ss_pred hcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcccccHHH
Q 008442 70 TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER--SRASEEEISTVFEKSLLCAFSTFEE 129 (565)
Q Consensus 70 ~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~--~~~~~~~~~~if~ral~~~~~~~~~ 129 (565)
..+..+.+...|++|+...|..+.+|..+...... ..+..+++...|++|+...+.....
T Consensus 150 ~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 33467789999999999999999888777643222 2344556778889998766554333
No 271
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.64 E-value=1.3e-05 Score=80.79 Aligned_cols=258 Identities=9% Similarity=-0.086 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC------CC
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP------WV 91 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p------~~ 91 (565)
....|..........|+++.+..+|++++...|.+. .+|...+.... ..++.+.+...|++|+...+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 345677777777888999999999999999999885 45666555443 44577889999999987532 12
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhh-----ccc-----cchhhhhHHH
Q 008442 92 GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRIL-----FSG-----EVEGVLDYSL 159 (565)
Q Consensus 92 ~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~-----~~~-----~~e~~~~~~~ 159 (565)
..+|..... +....+..+++...|++++..... ........+..........-. ... ..+....+..
T Consensus 87 ~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGN-TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 334444443 334468899999999999864221 111111111111111110000 000 0000011334
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch------HHHHHHHHHHHHHcCCh
Q 008442 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHI 233 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~~~~~ 233 (565)
+...|.+++.+.... ...+.....+...+.+....+ +++.|...|++++...+.. ..+|...+......|++
T Consensus 166 A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT-BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 444455554444322 112223456667788888888 9999999999999874322 33777888888899999
Q ss_pred HHHHHHHHHHHhcccCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 234 NEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 234 ~~aR~i~~~al~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
+.|..+|++++...-....+.. ++..........|+.+.+...+.+++..
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9999999999863222222222 3334444556678888888777776644
No 272
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=3.8e-06 Score=81.70 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhcCCc-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHcCCCCHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNVVRDVYSRATKNCPWVGELWVRSL 99 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~-~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~-~~~~~~~~v~erAl~~~p~~~~lW~~yi 99 (565)
.+..-+.|+.-....+.. +++..+++++|..+|.+..+|..-...+.... ...+..+..++.+|...|.+..+|....
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~ 110 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 334444444444444433 46666777777777777777766555444333 2555666677777776676666666654
Q ss_pred HHH----HHhc--CCHHHHHHHHHHHHhcccc
Q 008442 100 LSL----ERSR--ASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 100 ~~l----e~~~--~~~~~~~~if~ral~~~~~ 125 (565)
..+ .... ...++...++++++...+.
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 444 2211 3455555666666654443
No 273
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.60 E-value=2.5e-05 Score=75.66 Aligned_cols=230 Identities=9% Similarity=0.059 Sum_probs=148.7
Q ss_pred CChHh-HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc--CCCCHHH
Q 008442 18 SDSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--CPWVGEL 94 (565)
Q Consensus 18 ~~~~~-~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~--~p~~~~l 94 (565)
.+|++ .+...-++......|.++.+...++. ..|.+......++.++.. .+..+.+.++|++.+.. .|.+..+
T Consensus 28 ~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~-~~~~~~A~~~l~~ll~~~~~P~~~~~ 103 (291)
T 3mkr_A 28 SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLAS-HSRRDAIVAELDREMSRSVDVTNTTF 103 (291)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHC-STTHHHHHHHHHHHHHSCCCCSCHHH
T ss_pred CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcccCCCCHHH
Confidence 34444 34545555666677888777776654 234344455555665543 34677899999999975 4888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 008442 95 WVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQ 174 (565)
Q Consensus 95 W~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~ 174 (565)
|......+ ...+..+++..+|++ +.....+..+...+.. . .+++.+...|++++..-
T Consensus 104 ~~~la~~~-~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~--------~------g~~~~A~~~l~~~~~~~--- 160 (291)
T 3mkr_A 104 LLMAASIY-FYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK--------L------DRLDLARKELKKMQDQD--- 160 (291)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH--------T------TCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHH-HHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH--------C------CCHHHHHHHHHHHHhhC---
Confidence 87765534 346889999999887 2223323222222110 0 13344455555554431
Q ss_pred hcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcH
Q 008442 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (565)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~ 254 (565)
..+....+...|+.+....+ ++++|..+|++++..+|++..+|...+......|+++.|...|++++.. ..+ ..
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~-~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~-~~ 234 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGE-KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSG-HP 234 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-CH
T ss_pred --cCcHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CH
Confidence 11222344445666655445 8999999999999999999999999999999999999999999999973 333 34
Q ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHHH
Q 008442 255 DICHAWLRFEREYGTLE-DFDHSVQKV 280 (565)
Q Consensus 255 ~i~~~~~~fE~~~G~~~-~~~~~~~k~ 280 (565)
..|.....+-...|..+ .+...++++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666666678654 344455444
No 274
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.60 E-value=2.4e-06 Score=81.35 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=132.8
Q ss_pred hcCCchhHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC--------CCCHHHHHHH
Q 008442 35 SSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--------PWVGELWVRS 98 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~--------~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~--------p~~~~lW~~y 98 (565)
..|+++.+..+|++|+.. .|....+|...+.... ..+..+.+...|++|+... |....+|...
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 457888899999999884 3555667777666544 4457788999999999864 3334455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 99 LLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 99 i~~le~~~~~~~~~~~if~ral~~~-----~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
.. +....+..+++...|++++... ... ......+........ ...++..+...|++++..+..
T Consensus 92 ~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~----------~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 92 AV-LYGKRGKYKEAEPLCKRALEIREKVLGKFH-PDVAKQLNNLALLCQ----------NQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HH-HHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH----------TTTCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHhccHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHHHHHHHH
Confidence 54 3445788999999999998641 100 111111111111110 012556677788888877655
Q ss_pred hhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---------cchHHHHHHHHHHHHHcCChH------HHH
Q 008442 174 QMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------GAMLEAWQSYISMEIELDHIN------EAR 237 (565)
Q Consensus 174 ~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---------~~~~~lw~~yi~~e~~~~~~~------~aR 237 (565)
.... .+.....+..++.++...+ +++.|..+|++++... +....+|.....++...+... .+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4433 3334567777888888888 9999999999999862 222345555555554333222 222
Q ss_pred HHHHHHHhcccCCCCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 238 SIYKRCYSKRFTGTGSE--DICHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~--~i~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
.+++... ...+. ..+......-...|+.+.+...+++++.
T Consensus 239 ~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 239 SWYKACK-----VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ----CCC-----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcC-----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222111 11121 2333344455556776666666666543
No 275
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=3.6e-07 Score=81.44 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
+.+..........|+++.+...|++++...|.+...|..++..+.. .+..+.+...|++++...| ...++..... +.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~-~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYKSLIAK-LE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHHHHHHH-HH
Confidence 3455555555667777777788888888778888887777765543 3356667777777777767 5443322111 10
Q ss_pred HhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 008442 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (565)
Q Consensus 104 ~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 183 (565)
.. .+ . +.......|++++.. .+....
T Consensus 84 ~~-----------~~--------------------------~----------~~~~a~~~~~~al~~-------~P~~~~ 109 (176)
T 2r5s_A 84 LH-----------QQ--------------------------A----------AESPELKRLEQELAA-------NPDNFE 109 (176)
T ss_dssp HH-----------HH--------------------------H----------TSCHHHHHHHHHHHH-------STTCHH
T ss_pred HH-----------hh--------------------------c----------ccchHHHHHHHHHHh-------CCCCHH
Confidence 00 00 0 000011223333221 233445
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHccch--HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~--~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+..++.+....+ ++++|...|++++...|+. ...|...+......|+.+.|...|.++|.
T Consensus 110 ~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 110 LACELAVQYNQVG-RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 6667777887888 9999999999999988765 56898999999899999999999999886
No 276
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.9e-07 Score=86.90 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCHHHHHHHhccCCCeeEEEEeecC----CCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEeecCC
Q 008442 403 ATYEDLRRFFSDVGGVSSIRILHDK----FTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIARSNP 469 (565)
Q Consensus 403 ~~~~~l~~~f~~~G~i~~~~~~~~~----~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~~a~~ 469 (565)
-.+++|+..|++||.|.++.|+.+. .+|.++|++||+|.+.++|.+|+. |||..++||+|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999998554 345899999999999999999998 899999999999999764
No 277
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.52 E-value=2.3e-05 Score=74.34 Aligned_cols=185 Identities=11% Similarity=-0.033 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH---HHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG---ELW 95 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~---~lW 95 (565)
+...+..........|+++.+..+|++++..+|.+ ...|...+.... ..++.+.+...|++++...|.+. ..|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 56777777777788999999999999999999998 777777765444 44578889999999999988543 333
Q ss_pred HHHHHHHHH-------hcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 008442 96 VRSLLSLER-------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRAS 168 (565)
Q Consensus 96 ~~yi~~le~-------~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~ 168 (565)
......+.. ..+..+++...|++++...+...... ....++. .+...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~a~~~~~-------------------~~~~~~---- 147 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD--DATQKIR-------------------ELRAKL---- 147 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH--HHHHHHH-------------------HHHHHH----
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH--HHHHHHH-------------------HHHHHH----
Confidence 333322221 14667889999999887544321100 0000000 000100
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHc----------CChHH
Q 008442 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIEL----------DHINE 235 (565)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~---~~~lw~~yi~~e~~~----------~~~~~ 235 (565)
...+...+.++...+ +++.|...|++++..+|+ ....|...+...... |+++.
T Consensus 148 -------------~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 148 -------------ARKQYEAARLYERRE-LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp -------------HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 111334566677778 999999999999999877 456777776666544 88899
Q ss_pred HHHHHHHHHhc
Q 008442 236 ARSIYKRCYSK 246 (565)
Q Consensus 236 aR~i~~~al~~ 246 (565)
|...|++++..
T Consensus 214 A~~~~~~~~~~ 224 (261)
T 3qky_A 214 AVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999973
No 278
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=1.4e-05 Score=77.65 Aligned_cols=220 Identities=9% Similarity=0.057 Sum_probs=161.5
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCCCCHHHHHHHHHHHH---Hhc---chhh
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--DPGRVQLLYERAITDFPVSSDLWLDYTQYLD---KTL---KVGN 75 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~--~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~---~~~---~~~~ 75 (565)
+-..++.+|.-+|. ++.+|..-.......+ ..+....+++.+|..+|.++.+|..-...+. ... ...+
T Consensus 52 aL~~t~~~L~~nP~----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 52 ALHITELGINELAS----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHCcH----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 44667788888887 8999998888887777 8899999999999999999999998776552 222 4566
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHhhccccc
Q 008442 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE--EISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEV 151 (565)
Q Consensus 76 ~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~--~~~~if~ral~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~~~ 151 (565)
....++++++...|.+...|....-.+.. .+..+ +....+++++...+..+. .+....+.. .
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~------------l- 193 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDT-FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS------------K- 193 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS------------S-
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------------c-
Confidence 78899999999999999999887655554 34444 677888999876655332 222211100 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---cchHHHHHHHHHHHH
Q 008442 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEI 228 (565)
Q Consensus 152 e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~~~lw~~yi~~e~ 228 (565)
........++++++++...+...+.....|.+..-+....+...+.+..+.++++... +.+...|...++...
T Consensus 194 ----~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 194 ----KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp ----GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred ----cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 0001234588888888887776666777888877777777766776777777777643 566777777777777
Q ss_pred HcCChHHHHHHHHHHHh
Q 008442 229 ELDHINEARSIYKRCYS 245 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~ 245 (565)
..|+.+.|.++|+.++.
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 88899999999999875
No 279
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.51 E-value=1e-05 Score=74.90 Aligned_cols=170 Identities=9% Similarity=-0.017 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHH
Q 008442 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP-WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (565)
Q Consensus 54 p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p-~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~ 132 (565)
+.+++.|......... .++.+.+...|++|+...| ....+|..... .....+..+++...|++++...+.....+..
T Consensus 4 ~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN-AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGV-CADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhccCCCCcHHHHHHHH-HHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4566777777765554 4477889999999999998 77777766444 4445788999999999999876654443333
Q ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 133 ~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
+-..+... .++......|++++...............+|...+.+....+ ++++|...|++++..
T Consensus 82 l~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 82 KSAAYRDM--------------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHT--------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred HHHHHHHc--------------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhc
Confidence 33322210 144455555665555321100000011144666677777888 999999999999999
Q ss_pred ccc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 213 SGA--MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 213 ~~~--~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.|+ ....|.......... ++.+++++..
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~ 176 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNN-----GADVLRKATP 176 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGG
T ss_pred CCCcccHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 999 888888888877443 4455666654
No 280
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.50 E-value=6.8e-06 Score=89.85 Aligned_cols=171 Identities=14% Similarity=0.155 Sum_probs=126.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHH
Q 008442 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (565)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~ 131 (565)
.+|.+.+.|......+.. .+..+.+...|++||...|.....|......+ ...+..+++...|++|+...+.
T Consensus 4 s~P~~a~al~nLG~~~~~-~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l-~~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC------
Confidence 467777888877765443 44677788888888888888888887766533 3357777777777777753332
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 132 ~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
....|..++.++...+ ++++|...|+++++
T Consensus 76 -------------------------------------------------~~~a~~nLg~~l~~~g-~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 76 -------------------------------------------------FADAYSNMGNTLKEMQ-DVQGALQCYTRAIQ 105 (723)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 2223444555566777 99999999999999
Q ss_pred HccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 212 ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 212 ~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
..|++...|..........|+++.|...|++|+.. . +.....+..+...-...|+.+.+.+.+++++..
T Consensus 106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--K-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999973 2 234456666666667778888777777766543
No 281
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=5.7e-05 Score=71.98 Aligned_cols=208 Identities=10% Similarity=-0.052 Sum_probs=142.0
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~----~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~ 76 (565)
+...|+.++.. . +...|......... .++++.+...|++++... +...|.......... .++.+.
T Consensus 25 A~~~~~~a~~~--~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 25 AKKYFEKACDL--K----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp HHHHHHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHC--C----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 45667777772 2 45677777777777 889999999999999885 788888777655431 457788
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchh
Q 008442 77 VRDVYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (565)
Q Consensus 77 ~~~v~erAl~~~p~~~~lW~~yi~~le~~---~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~ 153 (565)
+...|++|+..- ....|......+... .++.+++...|++|+..... ..+..+-..+.. ....
T Consensus 97 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~--------~~~~-- 162 (273)
T 1ouv_A 97 ALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG--DGCTILGSLYDA--------GRGT-- 162 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH--------TSSS--
T ss_pred HHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH--HHHHHHHHHHHc--------CCCC--
Confidence 999999999863 556666555433331 57899999999999986532 222222221110 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 154 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~----~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
..++......|+++++. .+ ...+..++.++.. .+ ++++|...|++++...+ ...+.....+...
T Consensus 163 ~~~~~~A~~~~~~a~~~-------~~--~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL-------KD--SPGCFNAGNMYHHGEGATK-NFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-------TC--HHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-------CC--HHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 01444445555555432 22 2345556677766 66 99999999999998854 6677777777777
Q ss_pred ----cCChHHHHHHHHHHHh
Q 008442 230 ----LDHINEARSIYKRCYS 245 (565)
Q Consensus 230 ----~~~~~~aR~i~~~al~ 245 (565)
.++++.|...|++++.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHH
Confidence 8999999999999987
No 282
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=9.3e-05 Score=72.80 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
.+|..+..........+++..+++++|..+|.+..+|..-...+.......+.....++.+|...|.+..+|......++
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444333333444557899999999999999999999887766654445778999999999999999999998877666
Q ss_pred HhcC-CHHHHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch
Q 008442 104 RSRA-SEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (565)
Q Consensus 104 ~~~~-~~~~~~~if~ral~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 180 (565)
...+ ..++....+.+++...+..+. .+.......+. ..... ....+.++++++...+..++.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~------~~~~~---------~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS------TLGRI---------SEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH------HTTCC---------CHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------ccccc---------chhhHHHHHHHHHHHHHhCCC
Confidence 6524 566777899999986655333 23222222111 11100 123455666666666665555
Q ss_pred hHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 008442 181 LLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~------~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~ 232 (565)
....|.+-..+....+.. ++++.+.+.++|...|.+...|...--+....|.
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 666777766666665521 5788889999999999999999877766666554
No 283
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.43 E-value=2.4e-05 Score=75.63 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-
Q 008442 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA- 123 (565)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~--------~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~- 123 (565)
.|....+|...+..... .++.+.+..+|++++.. .|....+|..... +....+..+++...|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYAS-QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-VYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHH
Confidence 45555677776665544 34778899999999984 3444455555544 3344688999999999998642
Q ss_pred ----cccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCC
Q 008442 124 ----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKD 198 (565)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~ 198 (565)
... ......+........ . ..++..+...|.+++......... .+.....+...+.+....+ +
T Consensus 101 ~~~~~~~-~~~~~~~~~l~~~~~---~-------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~ 168 (311)
T 3nf1_A 101 KTLGKDH-PAVAATLNNLAVLYG---K-------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-K 168 (311)
T ss_dssp HHHCTTC-HHHHHHHHHHHHHHH---T-------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-C
T ss_pred HHhCCCC-hHHHHHHHHHHHHHH---H-------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-C
Confidence 110 111111111111110 0 125566777788777776544322 2334566777788888888 9
Q ss_pred hHHHHHHHHHHHHH--------ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 199 MVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 199 ~~~ar~i~e~~l~~--------~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++.|..+|++++.. .+....+|...+.+....|+++.|..+|++++.
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999987 555677899999999999999999999999986
No 284
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.43 E-value=2.1e-06 Score=93.86 Aligned_cols=171 Identities=15% Similarity=0.016 Sum_probs=109.7
Q ss_pred HhcCCchhHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 008442 34 QSSGDPGRVQLLYERAI--------TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal--------~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~ 105 (565)
...++++.+...|++++ ...|.+..+|...+..+... ++.+.+...|++|+...|.+..+|......+ ..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAERVGWRWRLVWYRAVAE-LL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhccCcchHHHHHHHHHHH-HH
Confidence 45688889999999999 88899999999887755443 4677899999999999999888888776533 34
Q ss_pred cCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHH
Q 008442 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (565)
Q Consensus 106 ~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~ 185 (565)
.+..+++...|++|+...+.....+..+-..+.. . .+++. ...|++++.. .+.....|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~----------g~~~~-~~~~~~al~~-------~P~~~~a~ 537 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----A----------GNTDE-HKFYQTVWST-------NDGVISAA 537 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----H----------TCCCT-TCHHHHHHHH-------CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----c----------CChHH-HHHHHHHHHh-------CCchHHHH
Confidence 6888999999999987655433333222222110 0 01112 2334433332 22233455
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 008442 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (565)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~ 229 (565)
...+.++...+ ++++|...|++++...|++...|...+.....
T Consensus 538 ~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 538 FGLARARSAEG-DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcC-CHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 55566666666 66666667766666666666666666555433
No 285
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.43 E-value=9.7e-06 Score=78.42 Aligned_cols=169 Identities=14% Similarity=-0.008 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHH
Q 008442 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (565)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~ 132 (565)
.|.+.+.+...+..+.. .++.+.+..+|++|+...|.+...|..... +....+..+++..+|++++...+......+.
T Consensus 113 lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~-~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAE-TLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHH-HHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 47777777777665443 346777889999999988988888888776 3344688888888888887654432111111
Q ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 133 ~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
....+ .. . ..+..++..+...+...+.....+..++.++...+ +++.|...|++++..
T Consensus 191 ~~~~l---~~-~-----------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIEL---LX-Q-----------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVG-RNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHH---HH-H-----------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHH---Hh-h-----------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 11111 00 0 00111222222333323445567777777777777 888888888888888
Q ss_pred ccch--HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 213 SGAM--LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 213 ~~~~--~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.|+. ...|...+.+....|+.+.|...|.+++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7776 77888888888888888888888888875
No 286
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.41 E-value=2.3e-05 Score=71.63 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHhcchhhHHHHHHHHHHH
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLD----------------YTQYLDKTLKVGNVVRDVYSRATK 86 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~----------------Y~~~l~~~~~~~~~~~~v~erAl~ 86 (565)
.+.+..-.......|+++.+...|++++...|.+...|.. .+..+ ...+..+.+...|++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY-KKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHH-HHCCCHHHHHHHHHHHHH
Confidence 4556666666677899999999999999999999998887 55533 345578889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHH
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF 134 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~ 134 (565)
..|.+...|......+ ...+..+++...|++++...+.....+..+-
T Consensus 83 ~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQ-VCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999998877644 4468899999999999987766555444433
No 287
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.40 E-value=1.5e-05 Score=70.39 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=88.5
Q ss_pred hHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008442 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (565)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (565)
...|+.++...|. +...|...+......|+.+.+..+|++++...|.+..+|..++...... ++.+.+..+|+++
T Consensus 28 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~ 102 (186)
T 3as5_A 28 VMLLEQVYDADAF----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV-QKYDLAVPLLIKV 102 (186)
T ss_dssp HHHHTTTCCTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 3344444444443 6778888888888899999999999999999999999999988765544 4778899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008442 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (565)
Q Consensus 85 l~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~ 122 (565)
+...|....+|......+ ...+..+++...|++++..
T Consensus 103 ~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 103 AEANPINFNVRFRLGVAL-DNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred HhcCcHhHHHHHHHHHHH-HHcCcHHHHHHHHHHHHhc
Confidence 999999988888777644 3467788888888877753
No 288
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.40 E-value=8.2e-06 Score=87.19 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=48.7
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
|+.+.+...|++++...|.+...|..++..+... ++.+.+...|++|+...|.....|..+...+ ...+..+++...|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGHPEAVARLGRVR-WTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHH
Confidence 4566777888888888888888888877655433 3667788888888888888777777766533 3357777777778
Q ss_pred HHHHhcccc
Q 008442 117 EKSLLCAFS 125 (565)
Q Consensus 117 ~ral~~~~~ 125 (565)
++|+...+.
T Consensus 81 ~~al~~~p~ 89 (568)
T 2vsy_A 81 QQASDAAPE 89 (568)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 777765443
No 289
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.38 E-value=7.3e-06 Score=70.80 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=97.4
Q ss_pred chhhHHHHHHHhc---CCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH
Q 008442 2 CNARAHLEEQISR---QDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (565)
Q Consensus 2 ~~~R~~~E~~l~~---~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~ 78 (565)
+..+..+|.+|.. ....++++...|..+.......|+++.+...|+++|..+|.++..|..+...... .++.+.+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHHH
Confidence 4566677777633 2334566777888888888899999999999999999999999999999876554 45788899
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccH
Q 008442 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (565)
Q Consensus 79 ~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~ 127 (565)
..|++|+...|....+|......+.......+.+...+++|+...+...
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 9999999999999999998876555543333456666799998665543
No 290
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.36 E-value=1.9e-05 Score=65.96 Aligned_cols=109 Identities=16% Similarity=0.024 Sum_probs=93.7
Q ss_pred CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 18 ~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
.+|+..+.|..-.....+.|+++.+...|++||...|.+..+|...+..+. ..+..+.+...|++||...|.....|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 477788899999998889999999999999999999999999999887555 4457888999999999999999999988
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccccHH
Q 008442 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~~~~~~~~ 128 (565)
....+ ...+..+++...|++++...+....
T Consensus 87 lg~~~-~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 87 KAACL-VAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 77644 4478899999999999987665433
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.3e-05 Score=71.04 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=87.5
Q ss_pred chhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CCc---hhHH-HHHHHHHhcCCCCH---------HHHHHHHH
Q 008442 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDP---GRVQ-LLYERAITDFPVSS---------DLWLDYTQ 65 (565)
Q Consensus 2 ~~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~---~~~---~~~~-~lyERal~~~p~~~---------~lW~~Y~~ 65 (565)
...|..||..|.......++-++.|..||+|...+ |.. .... .++|||+..+-.+. .+|+.|++
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 45799999999882122223578999999997653 222 2345 89999999765443 49999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 66 YLDKTLKVGNVVRDVYSRATKN-C-PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 66 ~l~~~~~~~~~~~~v~erAl~~-~-p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+.. ..+.....++|.....+ + -....+|..|+.++|. .+.+.++..||+.+++..
T Consensus 89 ~~~--~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 89 LFL--SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHS--TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred hhc--ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 751 11133467888888874 3 3567899999998888 588999999999999754
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=98.31 E-value=2.7e-05 Score=66.90 Aligned_cols=110 Identities=16% Similarity=0.316 Sum_probs=83.1
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CCc-hhHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHh
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDP-GRVQLLYERAITDFPVSS---------DLWLDYTQYLDKT 70 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~---~~~-~~~~~lyERal~~~p~~~---------~lW~~Y~~~l~~~ 70 (565)
.|..||..|... ....-++.|..||+|...+ |.. .....++|||+..+..+. .||+.|+++.
T Consensus 2 ~r~~fE~~i~~~--~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 76 (164)
T 2wvi_A 2 QKRAFEYEIRFY--TGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC--- 76 (164)
T ss_dssp CTHHHHHHCCCC--CSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHhhc--CCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---
Confidence 578899999633 2233588999999998763 222 346789999999876654 4999999863
Q ss_pred cchhhHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 71 LKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 71 ~~~~~~~~~v~erAl~~~--p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+...++|.....+- -....+|..|+.++|. .+.+..+..||..++...
T Consensus 77 ----~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 ----NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQK 126 (164)
T ss_dssp ----SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 12467888877742 3567899999998888 588999999999999854
No 293
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.27 E-value=1e-05 Score=69.68 Aligned_cols=113 Identities=8% Similarity=-0.065 Sum_probs=94.7
Q ss_pred hHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008442 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (565)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (565)
...|+.+|...|. +...|..........|+++.+...|++++...|.+..+|..+...+. ..+..+.+...|++|
T Consensus 7 ~~~~~~al~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSD----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 3456677766654 88899999999999999999999999999999999999998877544 445788899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 85 l~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+...|.....|......+ ...+..+++...|++++...
T Consensus 82 l~l~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 82 AVMDIXEPRFPFHAAECL-LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHSTTCTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCchHHHHHHHHH-HHcCCHHHHHHHHHHHHHHC
Confidence 999999988888776533 44788999999999999743
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=98.27 E-value=2.9e-05 Score=65.80 Aligned_cols=109 Identities=13% Similarity=0.228 Sum_probs=85.5
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CCchhHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHhc
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDPGRVQLLYERAITDFPVSS---------DLWLDYTQYLDKTL 71 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~---~~~~~~~~lyERal~~~p~~~---------~lW~~Y~~~l~~~~ 71 (565)
.|..||..|......| -++.|..||+|...+ |. .....++|||+..+..+. .+|+.|+++.
T Consensus 9 ~~~~fE~~i~~y~gdD--PL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---- 81 (152)
T 4a1g_A 9 VLQMLEAHMQSYKGND--PLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN---- 81 (152)
T ss_dssp HHHHHHHHTTSCCSSC--HHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB----
T ss_pred HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc----
Confidence 6888999998864323 588999999998774 33 347789999999865543 4999999863
Q ss_pred chhhHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 72 KVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~--p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+...++|....++- -....+|..|...+|. .+.+.++..||+.+++..
T Consensus 82 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 12578888888743 3567899999998888 588999999999999754
No 295
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=2e-05 Score=68.16 Aligned_cols=106 Identities=8% Similarity=-0.075 Sum_probs=92.2
Q ss_pred CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 18 ~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
.+|++...|..........|+++.+...|++++...|.++..|......+. ..+..+.+...|++|+...|.++..|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 467799999999998999999999999999999999999999999887554 4457888999999999999999999988
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 98 SLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
....+. ..+..+++...|++|+...++
T Consensus 110 lg~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 110 TGQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 776444 478899999999999985544
No 296
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.24 E-value=0.00022 Score=65.82 Aligned_cols=181 Identities=10% Similarity=-0.010 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHH---H--
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL---W-- 95 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~l---W-- 95 (565)
..|...+......|+.+.+...|++++...|.++ ..|...+.... ..++.+.+...|+++++..|.+..+ |
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455555556677999999999999999988874 56666554333 3457888999999999999976542 2
Q ss_pred HHHHHHHHH----------------hcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 008442 96 VRSLLSLER----------------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (565)
Q Consensus 96 ~~yi~~le~----------------~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~ 159 (565)
...+. ... ..+..+++...|++++...+........ ...+. .
T Consensus 84 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a--~~~l~-------------------~ 141 (225)
T 2yhc_A 84 RGLTN-MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA--TKRLV-------------------F 141 (225)
T ss_dssp HHHHH-HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH--HHHHH-------------------H
T ss_pred HHHHH-HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH--HHHHH-------------------H
Confidence 22221 111 1234667777788777644332110000 00000 0
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH---HHHHHHHHHHHHcCChHHH
Q 008442 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEA 236 (565)
Q Consensus 160 ~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~---~lw~~yi~~e~~~~~~~~a 236 (565)
+.... .......+.++...+ +++.|...|+++++.+|++. ..|...+......|+.+.|
T Consensus 142 ~~~~~-----------------~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 142 LKDRL-----------------AKYEYSVAEYYTERG-AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH-----------------HHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00000 011123456666777 99999999999999988764 6788889999999999999
Q ss_pred HHHHHHHHh
Q 008442 237 RSIYKRCYS 245 (565)
Q Consensus 237 R~i~~~al~ 245 (565)
.+.|++++.
T Consensus 204 ~~~~~~l~~ 212 (225)
T 2yhc_A 204 EKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 297
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00068 Score=66.28 Aligned_cols=190 Identities=10% Similarity=0.038 Sum_probs=126.5
Q ss_pred HhcCCc-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 34 QSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 34 ~~~~~~-~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~---------~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
...|.. +++..+++.+|..+|.++.+|.---..+...... .+.....++.++...|.+..+|....-.+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 345555 4799999999999999999999876665543321 356788999999999999999998876565
Q ss_pred HhcC-CHHHHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch
Q 008442 104 RSRA-SEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (565)
Q Consensus 104 ~~~~-~~~~~~~if~ral~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 180 (565)
.... ..++....+.+++...+..+. .+..+....+ . . .++.+++++...+..++.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l---------~-------~------~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA---------A-------V------APAEELAFTDSLITRNFS 177 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------T-------C------CHHHHHHHHHHHHHHCSC
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------C-------c------CHHHHHHHHHHHHHHCCC
Confidence 5443 477888899999986654333 2222222111 0 0 123444555555544445
Q ss_pred hHHHHHHHHHHHHHcC-------------CChHHHHHHHHHHHHHccchHHHHHHHHHHHHHc-----------CChHHH
Q 008442 181 LLRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-----------DHINEA 236 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~-------------~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~-----------~~~~~a 236 (565)
....|.+...+...+. ..++++.+.+.++|...|++...|...--+.... +-++.+
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 5566666555544441 1356788899999999999999997554444333 235677
Q ss_pred HHHHHHHHh
Q 008442 237 RSIYKRCYS 245 (565)
Q Consensus 237 R~i~~~al~ 245 (565)
.+.+..++.
T Consensus 258 l~~~~elle 266 (331)
T 3dss_A 258 LESCKELQE 266 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 788888876
No 298
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=2.3e-05 Score=69.38 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=99.9
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh--hHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG--NVVRDV 80 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~--~~~~~v 80 (565)
.+...|+.++...|. +...|..+.......|+.+.+...|++++...|.+..+|..++..+....+.. +.+...
T Consensus 28 ~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 28 AQLQALQDKIRANPQ----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp CCCHHHHHHHHHCCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 356788999988887 77899999999999999999999999999999999999999988634344455 889999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 81 ~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
|++++...|....+|......+ ...+..+.+...|++++...+.
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDA-FMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHH-HHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999999988877633 4468899999999999986544
No 299
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=6.4e-05 Score=63.89 Aligned_cols=105 Identities=9% Similarity=-0.054 Sum_probs=89.6
Q ss_pred CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 18 ~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
.+|.+...|..........|+++.+..+|++++...|.+..+|..+...+. ..+..+.+...|++|+...|.+..+|..
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 355688899999998899999999999999999999999999998887554 4457888999999999999999998887
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 98 SLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 98 yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
....+ ...+..+++...|++++...+
T Consensus 92 lg~~~-~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 92 AAECH-LQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCC
Confidence 76644 447889999999999997543
No 300
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.20 E-value=0.0001 Score=69.89 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=110.6
Q ss_pred chhhHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHH
Q 008442 72 KVGNVVRDVYSRATKNC--------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRI 138 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~--------p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~-----~~~~~~~~~~~~~~~ 138 (565)
++.+.+...|++|+..+ |....+|..... +....+..+++...|++++... ... ......+....
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~ 92 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-VYRDQNKYKEAAHLLNDALAIREKTLGKDH-PAVAATLNNLA 92 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHH
Confidence 45666888888888743 333445555444 3344788999999999998642 111 11111221111
Q ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----
Q 008442 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----- 212 (565)
Q Consensus 139 ~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----- 212 (565)
.... . ..++..+...|.+++.......... +.....+...+.++...+ ++++|..+|++++..
T Consensus 93 ~~~~---~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 93 VLYG---K-------RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHH---T-------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHH---H-------hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Confidence 1110 0 1256667788888888776554432 445667777888888888 999999999999988
Q ss_pred ---ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 213 ---SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 213 ---~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.+....+|...+......|+++.|..+|++++..
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5556778999999999999999999999999863
No 301
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.19 E-value=4.9e-05 Score=81.07 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=86.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...|. +...|..+.......|+.+.+...|++++...|.+...|..++..+.. .++.+.+...|+
T Consensus 7 ~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~ 81 (568)
T 2vsy_A 7 RELLQLRAAVRHRPQ----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLLQ 81 (568)
T ss_dssp --------------C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 355677778777776 788999999988899999999999999999999999999999886554 447888999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
+|+...|.+...|......+ ...+..+++...|++++...+
T Consensus 82 ~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHAL-EDAGQAEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999988877633 446778888888888876443
No 302
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.18 E-value=2.9e-05 Score=84.81 Aligned_cols=152 Identities=11% Similarity=-0.028 Sum_probs=114.9
Q ss_pred hcchhhHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 008442 70 TLKVGNVVRDVYSRAT--------KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGL 141 (565)
Q Consensus 70 ~~~~~~~~~~v~erAl--------~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~ 141 (565)
..++.+.+.+.|++|+ ...|.+..+|......+ ...+..+++...|++++...+..+..+..+-..+...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~- 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRAL-LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT- 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHH-HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc-
Confidence 3456788999999999 77798888888876633 3468899999999999987666554444333322210
Q ss_pred HHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHH
Q 008442 142 RRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ 221 (565)
Q Consensus 142 ~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~ 221 (565)
.+++.+...|++++.. .+.....|..++.+....+ ++++ ...|++++...|++...|.
T Consensus 481 -------------g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~~~~~g-~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 481 -------------GDYDSATKHFTEVLDT-------FPGELAPKLALAATAELAG-NTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp -------------TCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHHT-CCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHcC-ChHH-HHHHHHHHHhCCchHHHHH
Confidence 1344444555555543 3444567777888888888 8888 9999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 008442 222 SYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 222 ~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+......|+++.|...|++++.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcc
Confidence 999999999999999999999986
No 303
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.0012 Score=64.46 Aligned_cols=228 Identities=9% Similarity=-0.024 Sum_probs=145.7
Q ss_pred hHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC----------chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-h
Q 008442 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-V 73 (565)
Q Consensus 5 R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~----------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~-~ 73 (565)
-..++.+|..+|. ++.+|..--......+. ......+++.+|..+|.++.+|..-.-.+..... .
T Consensus 50 L~~t~~~L~~nP~----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 50 LELTSQILGANPD----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHTTCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHCch----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 3556677777776 88999766555443322 3567789999999999999999977654443332 3
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHhhccccc
Q 008442 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEV 151 (565)
Q Consensus 74 ~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~ 151 (565)
.+....++++++...|.+...|......+.......++....+.+++...+.. .|.+....+... ......
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l-------~~~~~~ 198 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-------HPQPDS 198 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH-------SCCC--
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-------hhcccc
Confidence 56788999999999999999998766545544333677888889999866553 333333322211 000000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcC----------CChHHHHHHHHHHHHHccchHHHHH
Q 008442 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG----------KDMVSARGVWERLLKISGAMLEAWQ 221 (565)
Q Consensus 152 e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~----------~~~~~ar~i~e~~l~~~~~~~~lw~ 221 (565)
.. ........++++++++..++...+.....|.+..-+..... +-++++.+.++.++...|++.-..+
T Consensus 199 ~~--~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 199 GP--QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cc--ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 00 00001245667777777766655566677765544444332 1356888889999998898754445
Q ss_pred HHHHHHHH---cCChHHHHHHHHHHHh
Q 008442 222 SYISMEIE---LDHINEARSIYKRCYS 245 (565)
Q Consensus 222 ~yi~~e~~---~~~~~~aR~i~~~al~ 245 (565)
..+.+... .+..+.++..+.+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 55544432 4667789999999875
No 304
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.17 E-value=0.00016 Score=59.59 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHH
Q 008442 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (565)
Q Consensus 26 W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~ 97 (565)
|...+......|+.+.+..+|++++...|.+...|..++...... ++.+.+..+|++++...|....+|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 74 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 444444444455555555555555555555555555544432222 23444555555555544444444433
No 305
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.16 E-value=1.5e-05 Score=76.75 Aligned_cols=192 Identities=10% Similarity=-0.022 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
....|..........|+.+.+...|+++|...|.+..+|..++.... ..+..+.+...|++|+...|.+..+|......
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888888888999999999999999999999999999887555 44578889999999999999999998887764
Q ss_pred HHHhcCCHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 008442 102 LERSRASEEEISTVFEKSLLCAFST---FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~ 178 (565)
+. ..+..+++...|++++...+.. +...+........ . ..+.. ..... .
T Consensus 82 ~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~--------------------~-~~~~~----~~~~~--~ 133 (281)
T 2c2l_A 82 QL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK--------------------K-KRWNS----IEERR--I 133 (281)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH--------------------H-HHHHH----HHHTC--C
T ss_pred HH-HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH--------------------H-HHHHH----HHHHH--H
Confidence 44 4688999999999999743321 0000110000000 0 01111 11111 1
Q ss_pred chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 008442 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-DHINEARSIYKRCYS 245 (565)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~-~~~~~aR~i~~~al~ 245 (565)
.....+...+..+. .+ +.+.|.+.|++++...|.+..+......+.... +.++.|..+|.++..
T Consensus 134 ~~~~~i~~~l~~l~--~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AA-ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCCHHHHHHHHHH--HH-HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHH--HH-HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11122333444443 24 788899999999988888887777777776555 678899999999875
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=98.15 E-value=3e-05 Score=65.65 Aligned_cols=83 Identities=11% Similarity=0.144 Sum_probs=61.9
Q ss_pred hcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 008442 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (565)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~ 252 (565)
+.+.+.++++|+.|+++- . + ++.+|..+... ......+|..|+.+....|++..|.+||+.+|.. ....
T Consensus 64 YknD~RyLklWl~ya~~~---~-d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--~A~P 134 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---S-D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN--QAEP 134 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---S-C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBS
T ss_pred ccCCHHHHHHHHHHHHhc---C-C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcc
Confidence 334556778888888552 2 3 78899888876 3455889999999999999999999999999984 2223
Q ss_pred cHHHHHHHHHHHHH
Q 008442 253 SEDICHAWLRFERE 266 (565)
Q Consensus 253 ~~~i~~~~~~fE~~ 266 (565)
-+.|-..+-+|+.+
T Consensus 135 ~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 135 REFLQQQYRLFQTR 148 (152)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 45677778788764
No 307
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00015 Score=64.21 Aligned_cols=101 Identities=9% Similarity=0.239 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHh--hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChHHHH
Q 008442 162 ETFQRASDYLSE--QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 162 ~~~~~a~~~l~~--~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~~aR 237 (565)
.++++|+..+.. .+.+.+.++++|+.|+++- ..++...++.+|..+... ......+|..|+.+....|++..|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 566777776533 3445667889999999875 122477899999999987 3456889999999999999999999
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHHHHH
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~fE~~ 266 (565)
+||+.+|... ....+.|-..+-+|+.+
T Consensus 136 ~Vy~~GI~~~--A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 136 VLLELGAENN--CRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence 9999999852 23345677888888876
No 308
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.13 E-value=3e-05 Score=66.86 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=82.7
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|..+|. +..+|..+.......|+++.+...|+++|...|.++++|..++..+....+..+.+...++
T Consensus 49 ~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 49 LAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 467788899988887 8899999999999999999999999999999999999999999876665544444555679
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSLER 104 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~ 104 (565)
+|++..|.++.+|......++.
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999998877665544
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.12 E-value=2.8e-05 Score=70.08 Aligned_cols=112 Identities=17% Similarity=0.333 Sum_probs=85.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhc---CC--chhHHHHHHHHHhcCCCCH---------HHHHHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GD--PGRVQLLYERAITDFPVSS---------DLWLDYTQYLD 68 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~---~~--~~~~~~lyERal~~~p~~~---------~lW~~Y~~~l~ 68 (565)
..|..||..|...... ..-++.|..||+|...+ |. ......++|||+..+..+. .+|+.|+++.
T Consensus 53 ~~r~~fE~~i~~~~~~-dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~- 130 (223)
T 4aez_C 53 KERMGHERKIETSESL-DDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI- 130 (223)
T ss_dssp HHHHHHHHHHHHGGGS-SCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc-
Confidence 4789999999873111 12478999999998764 32 2347799999999876654 4999999863
Q ss_pred HhcchhhHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 69 KTLKVGNVVRDVYSRATKNC--PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 69 ~~~~~~~~~~~v~erAl~~~--p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+...++|.....+- -....+|..|..++|. .+.+.++..||+.+++..
T Consensus 131 ------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 ------DEPVELFSFLAHHHIGQESSIFYEEYANYFES-RGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp ------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred ------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 23567888888743 3567899999998888 588999999999999744
No 310
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.07 E-value=0.0018 Score=64.51 Aligned_cols=267 Identities=11% Similarity=-0.053 Sum_probs=142.6
Q ss_pred hhHHHHHHHhcCCCCChH-hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHhcchhhHH
Q 008442 4 ARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWL-----DYTQYLDKTLKVGNVV 77 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~-~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~-----~Y~~~l~~~~~~~~~~ 77 (565)
++..++.+|...+..++. ....+..........|+++.+...|++++...+...+.+. ..+-.+....++.+.+
T Consensus 33 A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 112 (373)
T 1hz4_A 33 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 112 (373)
T ss_dssp HHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 556677777766542221 1223444445555678888888888888886554433221 1122223344567778
Q ss_pred HHHHHHHHHcCC--------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHhhcc
Q 008442 78 RDVYSRATKNCP--------WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFS 148 (565)
Q Consensus 78 ~~v~erAl~~~p--------~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~-~~~~~~~~~~~~~~~~~r~~~~~ 148 (565)
...|++++...+ .....+..... +....++.+++...|++++..... ........+........ .
T Consensus 113 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~---~-- 186 (373)
T 1hz4_A 113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQ-LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL---A-- 186 (373)
T ss_dssp HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH---H--
T ss_pred HHHHHHHHHHHHHhccccCcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH---H--
Confidence 888888887542 11122222222 333467888888888888863221 00001111111110000 0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHH--HHHHHHHHHcCCChHHHHHHHHHHHHHccc----hHHHHHH
Q 008442 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY--AYWAHLEQSMGKDMVSARGVWERLLKISGA----MLEAWQS 222 (565)
Q Consensus 149 ~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~--~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~----~~~lw~~ 222 (565)
..++......++++....... ..+...... ...+.+....+ +++.|...+++++...+. ....+..
T Consensus 187 -----~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 187 -----RGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp -----HTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 013444555566555543221 011111111 12233455667 999999999988875432 1335677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcccCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHhhHH
Q 008442 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (565)
Q Consensus 223 yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~k~~~~~ 284 (565)
++......|+++.|..++++++...-....+.. ++......-...|+.+.....+.+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 788888899999999999998763211111222 23333344556688887777777665443
No 311
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00015 Score=59.95 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
....|..........|+.+.+...|+++|...|.+..+|...+.... ..+..+.+...|++|+...|.....|......
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56778888888889999999999999999999999999999987555 44578889999999999999999999887764
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 008442 102 LERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~ 123 (565)
+ ...+..+++...|++++...
T Consensus 82 ~-~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 Q-IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHH
T ss_pred H-HHHhCHHHHHHHHHHHHHhC
Confidence 4 44788999999999999754
No 312
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.05 E-value=0.00013 Score=60.25 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=94.8
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.++...+. +...|..++......++.+.+..+|++++...|.+..+|..++.... ..++.+.+..+|+
T Consensus 19 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~ 93 (136)
T 2fo7_A 19 EAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQ 93 (136)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence 356678888877765 67788888888888899999999999999999999999998887554 4457788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
+++...|....+|..... +....++.+.+...|++++...
T Consensus 94 ~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 94 KALELDPRSAEAWYNLGN-AYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHCTTCHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCChHHHHHHHH-HHHHHccHHHHHHHHHHHHccC
Confidence 999999988888888776 3445788999999999988643
No 313
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.05 E-value=5.7e-05 Score=66.87 Aligned_cols=115 Identities=8% Similarity=-0.083 Sum_probs=87.9
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.+|...|. +...|..+.......|+++.+...|++++...| ++.++................+...|++
T Consensus 25 A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (176)
T 2r5s_A 25 ALNVIQTLSDELQS----RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQ 99 (176)
T ss_dssp HHHHHHTSCHHHHT----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 44556666666665 889999999999999999999999999999999 8876655433211111122236889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
|+...|.+..+|..+...+. ..+..+++...|++++...+
T Consensus 100 al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 100 ELAANPDNFELACELAVQYN-QVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCc
Confidence 99999999999999887444 47889999999999987553
No 314
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.05 E-value=8.5e-05 Score=64.79 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=89.5
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi 99 (565)
+.+...|..........|+++.+..+|+++|..+|.+..+|..++..+.. .++.+.+...|++|+...|.....|....
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677899999988999999999999999999999999999999875554 45788899999999999999999998887
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 100 ~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
..+ ...+..+++...|++++...+.
T Consensus 87 ~~~-~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LAR-FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHH-HHccCHHHHHHHHHHHHHhCCC
Confidence 644 4478899999999999975544
No 315
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.00023 Score=57.16 Aligned_cols=103 Identities=16% Similarity=0.046 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
....|...+......|+.+.+...|++++...|.+..+|..++..... .++.+.+...|++++...|....+|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456788888888889999999999999999999999999998876554 4477889999999999999999999888764
Q ss_pred HHHhcCCHHHHHHHHHHHHhccccc
Q 008442 102 LERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~~ 126 (565)
+ ...+..+++...|++++...+..
T Consensus 82 ~-~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 82 L-EFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp H-HHTTCHHHHHHHHHHHHTTCTTC
T ss_pred H-HHHhhHHHHHHHHHHHHHcCCCC
Confidence 4 44788999999999999866543
No 316
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.03 E-value=7e-05 Score=66.14 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=56.9
Q ss_pred cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCH--HHHH
Q 008442 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE--EEIS 113 (565)
Q Consensus 36 ~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~--~~~~ 113 (565)
.|+++.+...|++++...|.+..+|..++..... .++.+.+...|++|+...|.+..+|..+...+....+.. +++.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3566777788888888888888888888775543 346777888888888888877777777665423333444 5565
Q ss_pred HHHHHHHh
Q 008442 114 TVFEKSLL 121 (565)
Q Consensus 114 ~if~ral~ 121 (565)
..|++++.
T Consensus 102 ~~~~~al~ 109 (177)
T 2e2e_A 102 AMIDKALA 109 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 317
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.02 E-value=0.00015 Score=60.04 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=89.5
Q ss_pred ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 008442 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (565)
Q Consensus 19 ~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~y 98 (565)
.+.....|..........++.+.+..+|++++...|.+..+|..++.... ..++.+.+...|++++...|....+|...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34578899999999999999999999999999999999999999887543 44577889999999999999999999887
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 99 i~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
...+ ...+..+++...|++++...+.
T Consensus 91 a~~~-~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 91 AAAL-EAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHH-HHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHH-HHHhhHHHHHHHHHHHHHhCCC
Confidence 7644 4468899999999999976544
No 318
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=2e-05 Score=61.38 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH-HcCCcccCCeEEE
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDV-----GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAV-AKNKQMFLGKKLS 463 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~~~~~~~~g~~l~ 463 (565)
..++|-+-|||..+++..|+.+..++ |.|..|.++.|- |-|+|+|.|...|-+|. .++|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35788999999999999999999999 999999998875 57999999999887776 6999999999999
Q ss_pred Eee
Q 008442 464 IAR 466 (565)
Q Consensus 464 v~~ 466 (565)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 854
No 319
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.01 E-value=0.00026 Score=58.04 Aligned_cols=105 Identities=15% Similarity=0.023 Sum_probs=88.6
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi 99 (565)
+.....|...+......++.+.+...|++++...|.+..+|..++..... .++.+.+...|++++...|....+|....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 44667888888888889999999999999999999999999998876554 45778899999999999999988888877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccccc
Q 008442 100 LSLERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 100 ~~le~~~~~~~~~~~if~ral~~~~~~ 126 (565)
.. ....+..+.+...|++++...+..
T Consensus 88 ~~-~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 88 LA-LSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HH-HHHhCCHHHHHHHHHHHHhcCccc
Confidence 63 444788999999999999865543
No 320
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.00 E-value=0.00026 Score=67.31 Aligned_cols=187 Identities=7% Similarity=-0.049 Sum_probs=129.8
Q ss_pred hcCCchhHHHHHHHHHhcCCCCHHHHHHHH-------HHHHHhcchhhHHHHHHHHHHHcCC-----------CC-----
Q 008442 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYT-------QYLDKTLKVGNVVRDVYSRATKNCP-----------WV----- 91 (565)
Q Consensus 35 ~~~~~~~~~~lyERal~~~p~~~~lW~~Y~-------~~l~~~~~~~~~~~~v~erAl~~~p-----------~~----- 91 (565)
..+++..+...|.+++...|...+.|+..+ .-+..-. ....+.-.+.|++..-| ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~-r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW-YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH-HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH-HHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 367889999999999999999999999883 4333222 22335557777776333 11
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 008442 92 -----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (565)
Q Consensus 92 -----~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~ 166 (565)
..|++.|...| ...+.++++..+|..++...+... ..|..-+ . .....-|..
T Consensus 97 ~v~~r~dl~LayA~~L-~~~g~y~eA~~~l~~~~~~~p~~~----~~~~~a~------l------------~~~~~r~~d 153 (282)
T 4f3v_A 97 PVTSPLAITMGFAACE-AAQGNYADAMEALEAAPVAGSEHL----VAWMKAV------V------------YGAAERWTD 153 (282)
T ss_dssp ECSSHHHHHHHHHHHH-HHHTCHHHHHHHHTSSCCTTCHHH----HHHHHHH------H------------HHHTTCHHH
T ss_pred ccCCHhHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCchH----HHHHHHH------H------------HHHcCCHHH
Confidence 47889998744 446889999999988776544322 1111100 0 011133555
Q ss_pred HHHHHHhhhcCCchh--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 167 ASDYLSEQMKNTDGL--LRLYAYWAHLEQSMGKDMVSARGVWERLLKIS--GA-MLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 167 a~~~l~~~~~~~~~~--~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~--~~-~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
++.++.......++. ...+.........+| ++++|...|++++... |. ..+.++.........|+.+.|+.+|+
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566665544433443 235666778888889 9999999999999653 54 56799999999999999999999999
Q ss_pred HHHhc
Q 008442 242 RCYSK 246 (565)
Q Consensus 242 ~al~~ 246 (565)
+++..
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99873
No 321
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.97 E-value=0.0009 Score=57.62 Aligned_cols=103 Identities=10% Similarity=-0.088 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
....|..........|+.+.+...|++++...|.+..+|..++.... ..+..+.+...|++++...|....+|......
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45678888888888999999999999999999999999999887554 44577889999999999999999999887764
Q ss_pred HHHhcCCHHHHHHHHHHHHhccccc
Q 008442 102 LERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~~~~ 126 (565)
+ ...+..+++...|++++...+..
T Consensus 91 ~-~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 91 N-MALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred H-HHhccHHHHHHHHHHHHHhCCCC
Confidence 4 44788999999999999865543
No 322
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.97 E-value=0.00077 Score=63.54 Aligned_cols=146 Identities=5% Similarity=-0.131 Sum_probs=86.8
Q ss_pred hcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc-
Q 008442 51 TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLLSLERSRASEEEISTVFEKSLLCAFST- 126 (565)
Q Consensus 51 ~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~---~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~- 126 (565)
...|.+.+.+...+..... .+..+.+...|++++...|.+ ...|..... +....+..+++...|++++...+..
T Consensus 9 ~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~-~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYN-QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLAR-AYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHH-TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH-HHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 3456666666666654443 346788999999999988877 666655544 3334678888999999988753321
Q ss_pred --HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHH
Q 008442 127 --FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (565)
Q Consensus 127 --~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~ 204 (565)
...+..+-.++.. .. + .+....+ +++.|..
T Consensus 87 ~~~~a~~~lg~~~~~---------------------------------~~----~----------~~~~~~~-~~~~A~~ 118 (261)
T 3qky_A 87 RVPQAEYERAMCYYK---------------------------------LS----P----------PYELDQT-DTRKAIE 118 (261)
T ss_dssp THHHHHHHHHHHHHH---------------------------------HC----C----------CTTSCCH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHH---------------------------------hc----c----------cccccch-hHHHHHH
Confidence 1111111111100 00 0 0000023 4555556
Q ss_pred HHHHHHHHccchHHH-----------------HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 205 VWERLLKISGAMLEA-----------------WQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 205 i~e~~l~~~~~~~~l-----------------w~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.|++++..+|++... |...+.+....|+++.|...|++++..
T Consensus 119 ~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 119 AFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666555544333 366678888899999999999999973
No 323
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.96 E-value=0.0004 Score=68.29 Aligned_cols=222 Identities=10% Similarity=-0.001 Sum_probs=140.6
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcC-CchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-hhhHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-VGNVVRDVY 81 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~-~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~-~~~~~~~v~ 81 (565)
+-..++.+|..+|. ++.+|..--......+ ..+....+++.+|..+|.++.+|..-.-.+....+ ..+...+.+
T Consensus 73 AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 73 ALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 44567788888887 8999988777777777 58899999999999999999999987765555424 567788999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHhhccccch
Q 008442 82 SRATKNCPWVGELWVRSLLSLERSRAS-------EEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVE 152 (565)
Q Consensus 82 erAl~~~p~~~~lW~~yi~~le~~~~~-------~~~~~~if~ral~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~e 152 (565)
++++...|.+...|....-.+...... .++....+++++...+.. .|.+..+.+... ... .
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l---------~~~-~ 218 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR---------PGA-E 218 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS---------TTC-C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------ccc-c
Confidence 999999999999997755433332111 125556777777655543 232222221110 000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChH----------------HHHHHHHHHHHH---c
Q 008442 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV----------------SARGVWERLLKI---S 213 (565)
Q Consensus 153 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~----------------~ar~i~e~~l~~---~ 213 (565)
.....++++++++...+...+.....|.+..-+....+.... ..-.+.+.++.. .
T Consensus 219 ------~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 219 ------TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 012456667777766666556666788776666666553300 011222222222 1
Q ss_pred ------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 214 ------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 214 ------~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+.-++-..++.+...|+.++|.++|+....
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 24455666666777778888999999998765
No 324
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.96 E-value=0.00066 Score=68.14 Aligned_cols=223 Identities=10% Similarity=-0.026 Sum_probs=131.0
Q ss_pred hhHHHHHHHhcCCCC--ChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcchh
Q 008442 4 ARAHLEEQISRQDLS--DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-------LWLDYTQYLDKTLKVG 74 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~--~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~-------lW~~Y~~~l~~~~~~~ 74 (565)
+...|+.++...... .+.....|..........|+++.+...|++|+...+...+ .+...+. +....+..
T Consensus 122 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~-~~~~~g~~ 200 (383)
T 3ulq_A 122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT-NFLDLKQY 200 (383)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH-HHHHTTCH
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-HHHHhcCH
Confidence 455667776542111 2234567777777777788888999999999887554432 3333332 33344577
Q ss_pred hHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----c-cccHHHHHHHHHHHHHHHH
Q 008442 75 NVVRDVYSRATKNCPWVG------ELWVRSLLSLERSRASEEEISTVFEKSLLC-----A-FSTFEEYLDLFLTRIDGLR 142 (565)
Q Consensus 75 ~~~~~v~erAl~~~p~~~------~lW~~yi~~le~~~~~~~~~~~if~ral~~-----~-~~~~~~~~~~~~~~~~~~~ 142 (565)
+.+...|++|+...+... .+|..... +-...+..+++...|++|+.. . +.....+..+-..+..
T Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--- 276 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL-CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK--- 276 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH---
Confidence 888899999987654221 23333222 334467888899999998862 2 2212222222221110
Q ss_pred HHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHccchHHH
Q 008442 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLEA 219 (565)
Q Consensus 143 r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~e~~l~~~~~~~~l 219 (565)
..++..+...|++++....... .+.....+...+.+....+ + +.+|..++++. ...+....+
T Consensus 277 -----------~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~-~~~~~~~~~ 341 (383)
T 3ulq_A 277 -----------LGKIDKAHEYHSKGMAYSQKAG--DVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESK-MLYADLEDF 341 (383)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 0145556666777766653321 1111222334555665555 6 55566666554 223444668
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 220 WQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 220 w~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
+...+.+....|+++.|...|++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888889999999999999999999863
No 325
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.95 E-value=0.0006 Score=65.65 Aligned_cols=170 Identities=9% Similarity=-0.037 Sum_probs=114.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 008442 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (565)
Q Consensus 87 ~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~ 166 (565)
..|.....+......+ ...++.+++..+|++++...+.....+..+-..+. ...-+++
T Consensus 112 ~lp~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~---------------------~~g~~~~ 169 (287)
T 3qou_A 112 VLPREEELXAQQAMQL-MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI---------------------ALNRSED 169 (287)
T ss_dssp HSCCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred HcCCchhhHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH---------------------HCCCHHH
Confidence 4587777776655533 34688999999999999877665544443333222 1133555
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 167 ASDYLSEQMKNTDGLLRLYAYWAHL-EQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~-e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
|+..+...+...+... .....+.+ ....+ ..+.|...|++++...|++..+|..++..+...|+++.|...|.+++.
T Consensus 170 A~~~l~~~~~~~p~~~-~~~~~~~~~l~~~~-~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 170 AEAVLXTIPLQDQDTR-YQGLVAQIELLXQA-ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHTTSCGGGCSHH-HHHHHHHHHHHHHH-TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhcchH-HHHHHHHHHHHhhc-ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666655544333222 22222222 22334 566789999999999999999999999999999999999999999997
Q ss_pred cccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.. +.......+.....+-...|..+.+....++++
T Consensus 248 ~~-p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 248 XD-LTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HC-TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cc-cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 42 322235678888888888887766655555544
No 326
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.95 E-value=2.8e-05 Score=77.01 Aligned_cols=94 Identities=7% Similarity=0.032 Sum_probs=54.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHh
Q 008442 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (565)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~ 267 (565)
++.++...+ ++++|...|++++...|++...|...+......|+++.|...|++++.. . +....++..........
T Consensus 202 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~-P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 202 LAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--Y-PNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C-CCCHHHHHHHHHHHHHH
Confidence 334444555 6777777777777777777777777777777777777777777777652 1 12234444444444455
Q ss_pred CCHHHH-HHHHHHHhhHHH
Q 008442 268 GTLEDF-DHSVQKVTPRLE 285 (565)
Q Consensus 268 G~~~~~-~~~~~k~~~~~~ 285 (565)
|..+.. +..+.+...++.
T Consensus 278 ~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 278 RRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 555444 234444444443
No 327
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.92 E-value=0.00049 Score=55.77 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008442 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 23 ~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~l 102 (565)
...|...+......++.+.+..+|++++...|.+..+|..++...... +..+.+..+|++++...|....+|......+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567888888888899999999999999999999999999988765544 4778899999999999999988888877644
Q ss_pred HHhcCCHHHHHHHHHHHHhccccc
Q 008442 103 ERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 103 e~~~~~~~~~~~if~ral~~~~~~ 126 (565)
...+..+.+...|++++...+..
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 88 -YKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -HHhcCHHHHHHHHHHHHHhCCCc
Confidence 44688999999999999865543
No 328
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.92 E-value=0.0014 Score=63.02 Aligned_cols=210 Identities=10% Similarity=-0.022 Sum_probs=124.7
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008442 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKT-LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (565)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~-~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ra 119 (565)
++..++.+|-...+.+..+| .|.. .. ....+.+...|++|.. +-...+..+++...|++|
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~~~---~~~~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KLFS---GSDSYKFEEAADLCVQAAT---------------IYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HHHS---CCSHHHHHHHHHHHHHHHH---------------HHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hhcC---CCCCccHHHHHHHHHHHHH---------------HHHHcCCHHHHHHHHHHH
Confidence 46677777777777666777 4431 11 1135667778887733 112256777888888888
Q ss_pred Hhccc--ccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc-C
Q 008442 120 LLCAF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-G 196 (565)
Q Consensus 120 l~~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~ 196 (565)
+.... .........+........ ...++..+...|++++.+.... .........+...+.++... +
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~----------~~g~~~~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFK----------SGGNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhc
Confidence 76421 111111111111111110 0014455666677777655321 11111234555667777774 7
Q ss_pred CChHHHHHHHHHHHHHccch------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcH--H---HHHHHHHHHH
Q 008442 197 KDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE--D---ICHAWLRFER 265 (565)
Q Consensus 197 ~~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~--~---i~~~~~~fE~ 265 (565)
++++|...|++++...+.. ..+|...+.+....|+++.|..+|++++... +..... . .+......-.
T Consensus 133 -~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~ 210 (292)
T 1qqe_A 133 -DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQL 210 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999985532 4678888999999999999999999998742 211110 1 2333333445
Q ss_pred HhCCHHHHHHHHHHHhh
Q 008442 266 EYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 266 ~~G~~~~~~~~~~k~~~ 282 (565)
..|+.+.+..++++++.
T Consensus 211 ~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 211 AATDAVAAARTLQEGQS 227 (292)
T ss_dssp HTTCHHHHHHHHHGGGC
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 56888888888888764
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.90 E-value=0.00012 Score=65.88 Aligned_cols=95 Identities=9% Similarity=0.125 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHh--hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChHHHH
Q 008442 162 ETFQRASDYLSE--QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 162 ~~~~~a~~~l~~--~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~~aR 237 (565)
.++++|+..+.. .+.+.+.++++|+.|+++ . +.++.+|..+... ......+|..|+.+....|++..|.
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~----~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNY----I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT----C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHc----c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 566666666533 344566788999999874 2 2567899998887 3456889999999999999999999
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHHHH
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRFER 265 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~fE~ 265 (565)
+||..+|... ...-+.|-..+-.|+.
T Consensus 171 ~Vy~~Gi~~~--A~P~~rL~~~~~~F~~ 196 (223)
T 4aez_C 171 EVYQKGKRMK--AKPFLRFQQKYQQFTH 196 (223)
T ss_dssp HHHHHHHHHT--CBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CccHHHHHHHHHHHHH
Confidence 9999999842 2223455666666653
No 330
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.90 E-value=8.1e-05 Score=59.44 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC--CHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~--~~~lW~~yi 99 (565)
+...|..........|+.+.+...|++++...|.+..+|..++..... .+..+.+...|++++...|. ...+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 556777788888889999999999999999999999999998876554 44778899999999999999 899998877
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhccc
Q 008442 100 LSLERSR-ASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 100 ~~le~~~-~~~~~~~~if~ral~~~~ 124 (565)
. +.... +..+++...|++++...+
T Consensus 84 ~-~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 D-ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp H-HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred H-HHHHHhCCHHHHHHHHHHHhhccc
Confidence 6 44557 888999999999987544
No 331
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.89 E-value=0.0013 Score=65.87 Aligned_cols=234 Identities=12% Similarity=0.013 Sum_probs=135.5
Q ss_pred HHHHHhcCCchhHHHHHHHHHhc---CCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH-------HHHH
Q 008442 30 LKYEQSSGDPGRVQLLYERAITD---FPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG-------ELWV 96 (565)
Q Consensus 30 i~~e~~~~~~~~~~~lyERal~~---~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~-------~lW~ 96 (565)
..+....|+++.+...|++|+.. .+.. ..+|...+.. ....++.+.+...|++|+..++... ..+.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSES-YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34455679999999999999986 2322 2455544443 3345577889999999998654321 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 008442 97 RSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQ 174 (565)
Q Consensus 97 ~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~ 174 (565)
.... +-...+..+++...|++|+..... ........+........ ...++..+...|.+++.+....
T Consensus 189 ~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~----------~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 189 LFAT-NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN----------SQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHHHHhh
Confidence 2222 333468899999999999964221 11111111111111010 0024556666777777665332
Q ss_pred hcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhc
Q 008442 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDH---INEARSIYKRCYSK 246 (565)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-----~~~~lw~~yi~~e~~~~~---~~~aR~i~~~al~~ 246 (565)
. ..+.....+...+.+....+ +++.|...|++++...+ .....+.....+....|+ ++.|..++++.-.
T Consensus 258 ~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~- 334 (383)
T 3ulq_A 258 N-ILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML- 334 (383)
T ss_dssp T-CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-
T ss_pred c-cchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-
Confidence 2 11334566777788888888 99999999999998732 222233344455556677 6666666666511
Q ss_pred ccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 247 RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 247 ~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.+....++.....+-...|+.+.+...+++++
T Consensus 335 ---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 335 ---YADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01112344444455666788777776666654
No 332
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.87 E-value=0.00016 Score=60.18 Aligned_cols=92 Identities=13% Similarity=-0.030 Sum_probs=80.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|...|. +...|..........|+.+.+...|++||...|.+...|...+..+. ..+..+.+...|+
T Consensus 31 ~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~ 105 (126)
T 4gco_A 31 TAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV-AMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCCCHHHHHHHHH
Confidence 366788999988887 78899999999999999999999999999999999999999987555 4557888999999
Q ss_pred HHHHcCCCCHHHHHHHH
Q 008442 83 RATKNCPWVGELWVRSL 99 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi 99 (565)
+|++..|.+..++....
T Consensus 106 ~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 106 DALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHCTTCHHHHHHHH
T ss_pred HHHHHCcCCHHHHHHHH
Confidence 99999999988876643
No 333
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=0.00014 Score=60.02 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le 103 (565)
..|..........|+.+.+...|+++|...|.+...|......+. ..+..+.+...|++|+...|.....|......+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~- 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSH- 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 356667777778899999999999999999999999998887555 445778899999999999999999988776534
Q ss_pred HhcCCHHHHHHHHHHHHhccc
Q 008442 104 RSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 104 ~~~~~~~~~~~if~ral~~~~ 124 (565)
...+..+++...|++++...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 335778899999999987543
No 334
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.87 E-value=0.00024 Score=59.40 Aligned_cols=100 Identities=13% Similarity=-0.065 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~ 101 (565)
+...|..........|+++.+...|++++...|.+..+|..++..... .++.+.+...|++|+...|.....|......
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999876554 4577889999999999999999999887764
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 008442 102 LERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 102 le~~~~~~~~~~~if~ral~~~ 123 (565)
+ ...+..+.+...|++++...
T Consensus 87 ~-~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 Q-LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHH
T ss_pred H-HHHhhHHHHHHHHHHHHHHC
Confidence 4 44688999999999999643
No 335
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.83 E-value=0.0041 Score=59.70 Aligned_cols=163 Identities=11% Similarity=-0.041 Sum_probs=100.3
Q ss_pred chhhHHHHHHHHHHHcCCCCHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHH
Q 008442 72 KVGNVVRDVYSRATKNCPWVGEL-----WVRSLLSLERSRASEEEISTVFEKSLLCAF--STFEEYLDLFLTRIDGLRRR 144 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~~~~l-----W~~yi~~le~~~~~~~~~~~if~ral~~~~--~~~~~~~~~~~~~~~~~~r~ 144 (565)
++.+.+..+|+.++...+..+.. |...+..+....+..+++...|++|+.... ..+...+.++........
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-- 166 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-- 166 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH--
Confidence 35666778888888766554431 333333333444577888888888886321 111111111111110000
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc------hHH
Q 008442 145 ILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLE 218 (565)
Q Consensus 145 ~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~------~~~ 218 (565)
...+++.+...|++++..+.......+....++...+.+....+ ++++|...+++++...+. ...
T Consensus 167 --------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 167 --------ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp --------HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred --------HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 00145556667777776654432333334456667788888888 999999999999986422 256
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 008442 219 AWQSYISMEIELD-HINEARSIYKRCYS 245 (565)
Q Consensus 219 lw~~yi~~e~~~~-~~~~aR~i~~~al~ 245 (565)
+|..........| +++.|...|++|+.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888888899 46999999999985
No 336
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.81 E-value=0.0085 Score=59.50 Aligned_cols=237 Identities=12% Similarity=0.067 Sum_probs=140.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCHHH-H----HHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH----HHHHHH-H
Q 008442 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDL-W----LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG----ELWVRS-L 99 (565)
Q Consensus 30 i~~e~~~~~~~~~~~lyERal~~~p~~~~l-W----~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~----~lW~~y-i 99 (565)
.......|+++.+..++++++...|..... | ..... +....++.+.+...|++|+...|..+ ..|..+ +
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE-VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334456799999999999999988765432 1 11122 22234577889999999998654322 122221 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 100 LSLERSRASEEEISTVFEKSLLCAFS------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 100 ~~le~~~~~~~~~~~if~ral~~~~~------~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
-.+....+.++++...|++++..... .........+..+-+. ..+++.....+.+++.....
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA------------WARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHhhc
Confidence 22344578999999999999863210 1111111111111000 01455666677776665432
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc--chHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhc
Q 008442 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG--AMLEAWQSY-----ISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~--~~~~lw~~y-----i~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.. .+.....+...+.+....+ +++.|...+++++...+ .....|... +.+....|+++.|+.++.+++..
T Consensus 168 ~~--~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 168 YQ--PQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp SC--GGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred cC--cHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 11 1112345566778888888 99999999999997632 121234332 33456789999999999999763
Q ss_pred ccCCCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHhhH
Q 008442 247 RFTGTG--SEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (565)
Q Consensus 247 ~~~~~~--~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~ 283 (565)
. +.+. ....+..........|+.+.+...+.++...
T Consensus 245 ~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 245 E-FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp C-CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2111 1223444555666778888887777776544
No 337
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.81 E-value=0.00039 Score=59.89 Aligned_cols=107 Identities=8% Similarity=-0.026 Sum_probs=83.9
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 008442 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG 250 (565)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~ 250 (565)
+...+...+.....+...+......+ +++.|..+|++++...|++..+|..........|+++.|...|++++.. ..
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P 101 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKG-RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GK 101 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CC
Confidence 34444445556667777777777888 9999999999999999999999999999999999999999999999973 33
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 251 TGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 251 ~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+.+ ..|...-..-...|+.+.+..++++++
T Consensus 102 ~~~-~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 102 NDY-TPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp SCC-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334 445445555557788888888887775
No 338
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.80 E-value=0.0014 Score=63.23 Aligned_cols=209 Identities=13% Similarity=0.075 Sum_probs=127.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh-cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS-SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~-~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (565)
++...+.++-+..+. ....| .|+.+ + .++++.+...|+++... ....+..+.+...|
T Consensus 3 ~a~~~~~~a~k~~~~----~~~~~-~~~~~--~~~~~~~~A~~~~~~a~~~---------------~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKKGVP----SSGFM-KLFSG--SDSYKFEEAADLCVQAATI---------------YRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHHSSC----CCTHH-HHHSC--CSHHHHHHHHHHHHHHHHH---------------HHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhCc----CCCcc-hhcCC--CCCccHHHHHHHHHHHHHH---------------HHHcCCHHHHHHHH
Confidence 345555555555543 11234 44321 1 11367788889888431 22345678899999
Q ss_pred HHHHHcCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchh
Q 008442 82 SRATKNCPW------VGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (565)
Q Consensus 82 erAl~~~p~------~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~ 153 (565)
++|+...+. ....|..... +-...++.+++...|++|+..... ........+........ . .
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~---~----- 130 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYK-CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-N---D----- 130 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H---T-----
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-H---h-----
Confidence 999985421 1345555444 334468899999999999974321 11111112211111110 0 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchH-------HHHHHHHHH
Q 008442 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-------EAWQSYISM 226 (565)
Q Consensus 154 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~-------~lw~~yi~~ 226 (565)
..+++.+...|++|+.+..... ........+...+.+....+ ++++|..+|++++...+... .+|......
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQ-SVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 0145566677787777654211 01112345667788888888 99999999999999865432 267777778
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 008442 227 EIELDHINEARSIYKRCYS 245 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~ 245 (565)
....|+++.|...|++++.
T Consensus 209 ~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999986
No 339
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.79 E-value=0.00066 Score=61.76 Aligned_cols=114 Identities=9% Similarity=-0.025 Sum_probs=85.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHH----------------HHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMI----------------YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQY 66 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~----------------yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~ 66 (565)
++...|+.+|...|. +...|.. ........|+++.+...|+++|...|.+...|..+...
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 22 QAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp HHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 356677888877765 7777777 77777889999999999999999999999999999886
Q ss_pred HHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 008442 67 LDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER-SRASEEEISTVFEKSLL 121 (565)
Q Consensus 67 l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~-~~~~~~~~~~if~ral~ 121 (565)
+... +..+.+...|++++...|.....|......+-. .......+...|.+++.
T Consensus 98 ~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 98 QVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 6544 477889999999999999999988776543321 11223445555666553
No 340
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.78 E-value=0.00041 Score=59.85 Aligned_cols=112 Identities=13% Similarity=-0.153 Sum_probs=86.9
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.+...|+.++...|. +...|..++......|+.+.+...|++++...|.+..+|..++..... .++.+.+...|+
T Consensus 31 ~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~ 105 (166)
T 1a17_A 31 NAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 356778888888876 788899999988999999999999999999999999999998876554 447788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSL-ERSRASEEEISTVFEKS 119 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~l-e~~~~~~~~~~~if~ra 119 (565)
+++...|....+|..+.... ....+.++++...++++
T Consensus 106 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 106 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999888885544321 11234445555555543
No 341
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.77 E-value=0.0057 Score=58.72 Aligned_cols=162 Identities=10% Similarity=-0.057 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHh
Q 008442 73 VGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRI 145 (565)
Q Consensus 73 ~~~~~~~v~erAl~~~p~~~~-----lW~~yi~~le~~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~ 145 (565)
+.+.+...|+.++...+.... .|..++-.+....+..+++...|++|+..... ........+........
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--- 166 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA--- 166 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---
Confidence 566677788888876654332 33333333444456788888888888853211 11111111111110000
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc------hHHH
Q 008442 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEA 219 (565)
Q Consensus 146 ~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~------~~~l 219 (565)
...+++.+...|++++...............++...+.++...+ ++++|...|++++...+. ...+
T Consensus 167 -------~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 167 -------ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp -------HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred -------HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 00145566677777776654332211112245666777888888 999999999999987422 2678
Q ss_pred HHHHHHHHHHcCChHHH-HHHHHHHHh
Q 008442 220 WQSYISMEIELDHINEA-RSIYKRCYS 245 (565)
Q Consensus 220 w~~yi~~e~~~~~~~~a-R~i~~~al~ 245 (565)
+..........|+++.| ...|++|+.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888889999999999 888999975
No 342
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.0014 Score=69.47 Aligned_cols=172 Identities=10% Similarity=0.029 Sum_probs=118.4
Q ss_pred CchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-
Q 008442 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA- 107 (565)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~---------~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~- 107 (565)
-.+++..+|+++|..+|.++.+|..-...+.....+ .+...+.|++|+...|.+..+|....-.++. .+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccc
Confidence 346789999999999999999999877666554432 5678899999999999999999987765554 44
Q ss_pred -CHHHHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 008442 108 -SEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (565)
Q Consensus 108 -~~~~~~~if~ral~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l 184 (565)
..++....+++++...+..+. .+........ . ..++++++++...+..++.....
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-----------------~-----~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQA-----------------A-----VAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------------C-----CCHHHHHHHHHTTTTTTCCCHHH
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-----------------C-----CChHHHHHHHHHHHHHCCCCccH
Confidence 568888999999986554322 2222111110 0 02455667777776666556667
Q ss_pred HHHHHHHHHHcC-------------CChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 008442 185 YAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (565)
Q Consensus 185 ~~~~a~~e~~~~-------------~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~ 232 (565)
|.+...+..... +.++++.+.+.+++...|++..+|..+--+....+.
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 766555544431 135678888888888888888888876666554444
No 343
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00077 Score=56.77 Aligned_cols=104 Identities=12% Similarity=-0.045 Sum_probs=87.2
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHH
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~ 96 (565)
+.....|..........|+++.+..+|++++...|.+ ..+|..++.... ..++.+.+...|++++...|....+|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3467889999998899999999999999999999987 788888877544 445788899999999999999988888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 97 RSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 97 ~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
.....+ ...+..+++...|++++...+.
T Consensus 104 ~~a~~~-~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 104 RRSQAL-EKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHH-HHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCC
Confidence 877644 3468899999999999986554
No 344
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.71 E-value=0.013 Score=60.87 Aligned_cols=259 Identities=8% Similarity=-0.012 Sum_probs=132.5
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~----~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~ 76 (565)
+...|+.++... +...+..+...... .++.+.+...|++++.. .+...|.......... .++.+.
T Consensus 134 A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 134 SVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 556677776553 23455555555554 56777888888888775 4566666666544431 346667
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcccccHHHHHHHHHHH-----------HHHHH
Q 008442 77 VRDVYSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR-----------IDGLR 142 (565)
Q Consensus 77 ~~~v~erAl~~~p~~~~lW~~yi~~le~---~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~-----------~~~~~ 142 (565)
+...|++|+..-+.....++..+ +.. ...+.+++...|++++..........+...... +.+++
T Consensus 206 A~~~~~~a~~~~~~~a~~~lg~~--y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 206 SAQWYRKSATSGDELGQLHLADM--YYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--HHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH--HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 78888888775332222222222 222 145677777778877764432211111111100 01111
Q ss_pred HHhhccccchhhhhHHHHH--------HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHH
Q 008442 143 RRILFSGEVEGVLDYSLIR--------ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--KDMVSARGVWERLLKI 212 (565)
Q Consensus 143 r~~~~~~~~e~~~~~~~~~--------~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~--~~~~~ar~i~e~~l~~ 212 (565)
+-.. ....+.......+. ..+++|+.++.......+. ..+...+.++...+ .++++|...|++++..
T Consensus 284 ~a~~-~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAE-QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 1110 00000000000000 1233344444443333222 22333444444422 1567888888888876
Q ss_pred ccchHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHhh
Q 008442 213 SGAMLEAWQSYISMEIE----LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE----YGTLEDFDHSVQKVTP 282 (565)
Q Consensus 213 ~~~~~~lw~~yi~~e~~----~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~----~G~~~~~~~~~~k~~~ 282 (565)
.+...|..+..+... .++++.|...|++++.. ..+ ..+...-.+-.. .|+.+.+...+.++..
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GLS-AAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CCH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 346777788887776 68889999999998863 223 333222222222 4666666666666543
No 345
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.69 E-value=0.0071 Score=57.05 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=111.0
Q ss_pred HHHHHHHHhcCCCCHH-------HHHHHHH-HHHHhc------------chhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008442 43 QLLYERAITDFPVSSD-------LWLDYTQ-YLDKTL------------KVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 43 ~~lyERal~~~p~~~~-------lW~~Y~~-~l~~~~------------~~~~~~~~v~erAl~~~p~~~~lW~~yi~~l 102 (565)
..+||-.+..+|.+.. +...|+. |++... ....+++.+|.||.... ++.|
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~----------~raL 121 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA----------LSSL 121 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH----------HHHH
Confidence 4788999999999975 6777765 554311 12345677777777632 1233
Q ss_pred HHhcCCHH-HHH----HHHHHHHh-cccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 008442 103 ERSRASEE-EIS----TVFEKSLL-CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (565)
Q Consensus 103 e~~~~~~~-~~~----~if~ral~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~ 176 (565)
+.....+. .++ .-|..++. +....+.. .+|....-... ................++..+++++++=..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~--L~W~ai~~ss~-a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~- 197 (301)
T 3u64_A 122 ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGT--LYWVGTGYVAA-FALTPLGSALPDTVHAAVMMLERACDLWPSYQ- 197 (301)
T ss_dssp HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHH--HHHHHHHHHHH-HTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH-
T ss_pred HHhCccHHHHHHhcchhhHHHHHHHcCccccHH--HHHHHHHHHHH-HhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc-
Confidence 33322222 111 23444553 33332221 22222110000 00111112222344555666666666422111
Q ss_pred CCchhHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHccch-HHHHHHHHHHHHH-cCChHHHHHHHHHHHhc
Q 008442 177 NTDGLLRLYAYWAHLEQSM----GKDMVSARGVWERLLKISGAM-LEAWQSYISMEIE-LDHINEARSIYKRCYSK 246 (565)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~----~~~~~~ar~i~e~~l~~~~~~-~~lw~~yi~~e~~-~~~~~~aR~i~~~al~~ 246 (565)
.-..|..++.++... +++.++|+..|+++|..+|+. ...+..|++|... .++.+.++..+++++.-
T Consensus 198 ----~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 198 ----EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp ----HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred ----cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 234677778888774 449999999999999999975 9999999999977 59999999999999973
No 346
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.66 E-value=0.0009 Score=53.59 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+....++...+.+....+ +++.|...|++++...|+...+|..++......|+++.|..+|++++.
T Consensus 35 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 35 PHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334567777788888888 999999999999999998899999999999999999999999999987
No 347
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.66 E-value=0.057 Score=55.89 Aligned_cols=228 Identities=11% Similarity=-0.029 Sum_probs=131.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh----cCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhh
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGN 75 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~----~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~ 75 (565)
++...|+.++... +...+......... .++.+.+...|++++.. .++..+..+....... .++.+
T Consensus 97 ~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 97 QAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 4667788887654 34556666666666 67899999999999886 5677777776654431 35678
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcccccHHHHHHHHHHH-----------HHHH
Q 008442 76 VVRDVYSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR-----------IDGL 141 (565)
Q Consensus 76 ~~~~v~erAl~~~p~~~~lW~~yi~~le~---~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~-----------~~~~ 141 (565)
.+...|++|+.. .....|......+.. ...+.+++...|++++..........+...... +.++
T Consensus 169 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 169 MAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 899999999985 344555444433333 157889999999999976533221111111110 1111
Q ss_pred HHHhhccccchhhhhHHHH-------HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc----CCChHHHHHHHHHHH
Q 008442 142 RRRILFSGEVEGVLDYSLI-------RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM----GKDMVSARGVWERLL 210 (565)
Q Consensus 142 ~r~~~~~~~~e~~~~~~~~-------~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~----~~~~~~ar~i~e~~l 210 (565)
++-.. .........+..+ ...+.+|+.++.......++ ..+...+.++... .+++++|...|++++
T Consensus 247 ~~a~~-~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~--~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 247 SQSAE-QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS--DGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHH-CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 11111 1111100011110 11234555555555443322 2333445555443 138888888888888
Q ss_pred HHccchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHh
Q 008442 211 KISGAMLEAWQSYISMEIELD---HINEARSIYKRCYS 245 (565)
Q Consensus 211 ~~~~~~~~lw~~yi~~e~~~~---~~~~aR~i~~~al~ 245 (565)
+..+ ...|.....+....| +++.|..+|++++.
T Consensus 324 ~~~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 324 EQGD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HTTC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred hcCC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 7632 345555555554445 77888888888876
No 348
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.66 E-value=0.00025 Score=58.37 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=69.7
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|...|. +...|..........|+.+.+...|+++|...|.+...|...+..+.. .+..+.+...|+
T Consensus 35 ~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~~ 109 (121)
T 1hxi_A 35 EAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 467789999999887 889999999999999999999999999999999999999988875554 447788999999
Q ss_pred HHHHcCCCCH
Q 008442 83 RATKNCPWVG 92 (565)
Q Consensus 83 rAl~~~p~~~ 92 (565)
+++...|...
T Consensus 110 ~al~~~P~~~ 119 (121)
T 1hxi_A 110 AWLLSQPQYE 119 (121)
T ss_dssp HHHC------
T ss_pred HHHHhCcCCC
Confidence 9999877543
No 349
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.65 E-value=0.003 Score=58.02 Aligned_cols=176 Identities=11% Similarity=-0.031 Sum_probs=107.2
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHH---HHHHHHHHHH----------
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDK---------- 69 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~l---W~~Y~~~l~~---------- 69 (565)
++...|+.++...|. ++.....|...+......|+.+.+...|++++..+|.+..+ |.........
T Consensus 22 ~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 22 QAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 367788888888774 22234577777777788899999999999999999998753 2221111111
Q ss_pred -------hcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 008442 70 -------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR 142 (565)
Q Consensus 70 -------~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~ 142 (565)
..+..+.+...|++++...|.+...|..+.. +.. +...+.. .. +.+-..+. .
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~-l~~-------~~~~~~~--------~~--~~~a~~~~--~- 159 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR-LVF-------LKDRLAK--------YE--YSVAEYYT--E- 159 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH-HHH-------HHHHHHH--------HH--HHHHHHHH--H-
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH-HHH-------HHHHHHH--------HH--HHHHHHHH--H-
Confidence 1346678999999999999998877765433 111 1100000 00 00000000 0
Q ss_pred HHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch
Q 008442 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (565)
Q Consensus 143 r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~ 216 (565)
..++..+...|+++++... ..+.....+...+......+ +.+.|...++.++...|++
T Consensus 160 -----------~~~~~~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g-~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 160 -----------RGAWVAVVNRVEGMLRDYP----DTQATRDALPLMENAYRQMQ-MNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----------HTCHHHHHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCCSCC
T ss_pred -----------cCcHHHHHHHHHHHHHHCc----CCCccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCc
Confidence 0133344444554444321 12222356667788888888 9999999999988876654
No 350
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.64 E-value=0.00098 Score=54.53 Aligned_cols=101 Identities=12% Similarity=-0.049 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC-------HHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GEL 94 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~-------~~l 94 (565)
....|..........|+.+.+...|++++...|.+..+|..++..... .++.+.+...|++++...|.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 556788888888889999999999999999999999999988876554 447788999999999987755 667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 95 WVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 95 W~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
|......+ ...++.+.+...|++++...+
T Consensus 82 ~~~la~~~-~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 82 YARIGNSY-FKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH-HHhccHHHHHHHHHHHHHhCC
Confidence 77666533 346889999999999998554
No 351
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.63 E-value=0.0011 Score=55.92 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=73.6
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHH
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~ 257 (565)
.+.....+...+......+ +++.|..+|++++...|++..+|..........|+++.|...|++++.. ..+.+ .++
T Consensus 14 ~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~-~~~ 89 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAG-KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEP-RFP 89 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT-HHH
T ss_pred CHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCc-HHH
Confidence 3444555556666666777 8999999999999988888899998888888899999999999999873 22333 444
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 258 HAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 258 ~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
......-...|+.+.+...+++++
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455556788887777777665
No 352
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.62 E-value=0.0033 Score=61.89 Aligned_cols=106 Identities=12% Similarity=-0.071 Sum_probs=89.1
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~---------------~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
.....|..........|+++.+...|++||...|.+ ..+|..++..+.. .+..+.+...|++|+
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 366788888888889999999999999999999998 5888888875544 457888999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHH
Q 008442 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~ 128 (565)
...|.....|......+ ...+..+++...|++|+...+....
T Consensus 224 ~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAH-LAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999988877644 4478899999999999987665443
No 353
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.60 E-value=0.00073 Score=58.67 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=59.9
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+|+.++...+...+....+|...+.++...+ +++.|...|++++...|++..+|..+.......|+++.|...|++++.
T Consensus 29 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 29 KAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333333333333444567777777787877 888899999999988888888888888888888999999999998886
No 354
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.002 Score=49.85 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc---C--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCCeEEE
Q 008442 389 TDECTAFLSNINLKATYEDLRRFFSD---V--GGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLGKKLS 463 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~l~~~f~~---~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~l~ 463 (565)
..+.+|.|.|||+.++++.|.-+|+. - |.|.++.... +-|+|+|.+...|+..|+...+.|.|.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 45689999999999999999999976 2 5677776532 468999999999999999878999999999
Q ss_pred EeecCCCCCCC
Q 008442 464 IARSNPKQRKD 474 (565)
Q Consensus 464 v~~a~~~~~~~ 474 (565)
|....+.-..+
T Consensus 78 V~P~~~~~~~r 88 (104)
T 2dhx_A 78 LRPAPPRAPAR 88 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEcCCCCCcce
Confidence 98876665433
No 355
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.59 E-value=0.011 Score=59.00 Aligned_cols=240 Identities=14% Similarity=-0.010 Sum_probs=136.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC----H---HHH
Q 008442 29 YLKYEQSSGDPGRVQLLYERAITDFPVS------SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----G---ELW 95 (565)
Q Consensus 29 yi~~e~~~~~~~~~~~lyERal~~~p~~------~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~----~---~lW 95 (565)
...+....|+.+.+...|++|+...... ..++...+. +....++.+.+...|++|+...+.. . ..+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAE-AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3444566799999999999999864321 123333333 3334557788999999999865421 1 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 008442 96 VRSLLSLERSRASEEEISTVFEKSLLCAF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (565)
Q Consensus 96 ~~yi~~le~~~~~~~~~~~if~ral~~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~ 173 (565)
..... +-...+..+.+...|++|+.... .........+........ . ..+++.+...|.+++.+...
T Consensus 186 ~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~---------~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 186 FVIAG-NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-R---------SGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H---------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-H---------CCCHHHHHHHHHHHHHHHHh
Confidence 22222 33446889999999999996321 111111111111110000 0 01445566666766665543
Q ss_pred hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh
Q 008442 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDH---INEARSIYKRCYS 245 (565)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~-----~~~~lw~~yi~~e~~~~~---~~~aR~i~~~al~ 245 (565)
. ..+.....+...+.+....+ +++.|...|++++...+ ...........+....++ +..|..++++.-.
T Consensus 255 ~--~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~ 331 (378)
T 3q15_A 255 K--VPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331 (378)
T ss_dssp H--CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC
T ss_pred h--CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC
Confidence 2 22233556666788888888 99999999999998732 222333333333444566 5566666555311
Q ss_pred cccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHH
Q 008442 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEEL 287 (565)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~~~~~~~ 287 (565)
.+....++.....+-...|+.+.+...+.+++...+++
T Consensus 332 ----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 332 ----HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 01122344445556667788888887777776555443
No 356
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.59 E-value=0.0012 Score=53.80 Aligned_cols=94 Identities=15% Similarity=-0.033 Sum_probs=79.6
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.++...|. +...|..++......++.+.+...|++++...|.+..+|..++..... .++.+.+...|++
T Consensus 31 A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 31 AVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 55678888887776 678899999988899999999999999999999999999998876554 4477889999999
Q ss_pred HHHcCCCCHHHHHHHHHHH
Q 008442 84 ATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~l 102 (565)
++...|....+|..+...+
T Consensus 106 ~~~~~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 106 ALELDPDNETYKSNLKIAE 124 (131)
T ss_dssp HHHHSTTCHHHHHHHHHHH
T ss_pred HHhcCccchHHHHHHHHHH
Confidence 9999999888887766533
No 357
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.58 E-value=0.0018 Score=55.30 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHH
Q 008442 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (565)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~ 257 (565)
.+.....+...+......+ +++.|...|++++...|.+..+|..........|+++.|...|++++.. ..+.+ ..|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~-~~~ 92 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSG-XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEP-RFP 92 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCT-HHH
T ss_pred CHhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCc-hHH
Confidence 3444556666677777777 8999999999999999988999999888888999999999999999873 22333 444
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 258 HAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 258 ~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
......-...|+.+.+...+.+++
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444445556788888777777765
No 358
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00078 Score=55.41 Aligned_cols=93 Identities=13% Similarity=-0.077 Sum_probs=79.5
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
++...|+.+|...|. +...|..........|+.+.+...|+++|...|.+...|..++..+.. .++.+.+...|+
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~ 96 (126)
T 3upv_A 22 NAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHHHHH
Confidence 366788888988887 788999999999999999999999999999999999999999875554 457888999999
Q ss_pred HHHHcC------CCCHHHHHHHHH
Q 008442 83 RATKNC------PWVGELWVRSLL 100 (565)
Q Consensus 83 rAl~~~------p~~~~lW~~yi~ 100 (565)
+++... |....+|.....
T Consensus 97 ~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 97 AARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCcccCCchhHHHHHHHHHH
Confidence 999988 877777766544
No 359
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.57 E-value=0.0016 Score=55.90 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHh--hhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCChHHHH
Q 008442 162 ETFQRASDYLSE--QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEAR 237 (565)
Q Consensus 162 ~~~~~a~~~l~~--~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--~~~~~~lw~~yi~~e~~~~~~~~aR 237 (565)
.++++|+..+.. .+.+.+.++++|+.|+++- . + ++.+|..+... ......+|..|+.+....|++..|.
T Consensus 44 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~-~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 44 TLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N-E---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S-C---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C-C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 455666665532 3445666889999888763 3 3 67899988887 4456889999999999999999999
Q ss_pred HHHHHHHhcccCCCCcHHHHHHHHHHHHH
Q 008442 238 SIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (565)
Q Consensus 238 ~i~~~al~~~~~~~~~~~i~~~~~~fE~~ 266 (565)
+||..+|... ....+.|-..+-.|+.+
T Consensus 117 ~Iy~~Gi~~~--A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 117 AIFQEGIQQK--AEPLERLQSQHRQFQAR 143 (164)
T ss_dssp HHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHH
Confidence 9999999852 23345677888888766
No 360
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.57 E-value=0.0034 Score=60.88 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHccch------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++++|...|++++...+.. ..++.....+....|+++.|...|++++.
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444432211 23444444444444444444444444443
No 361
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.56 E-value=0.00076 Score=55.54 Aligned_cols=95 Identities=17% Similarity=-0.010 Sum_probs=79.4
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.+...|+.++...|. +...|..+.......++.+.+...|++++...|.+..+|..++..... .++.+.+...|+
T Consensus 34 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 108 (133)
T 2lni_A 34 QAMKHYTEAIKRNPK----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 356778888887776 678899999888889999999999999999999999999999876554 447788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~~l 102 (565)
+++...|....+|......+
T Consensus 109 ~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 109 KALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHH
Confidence 99999998877777665433
No 362
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.0011 Score=55.81 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCchh---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHH
Q 008442 164 FQRASDYLSEQMKNTDGL---LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~---~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~ 240 (565)
|..|+.++...+...+.. ..+|..++..+...+ ++++|...|++++...|+...+|..++......|+++.|..+|
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444333332 566777788888888 9999999999999999988999999999999999999999999
Q ss_pred HHHHhcccCCCCcHHHHHHHHHHH
Q 008442 241 KRCYSKRFTGTGSEDICHAWLRFE 264 (565)
Q Consensus 241 ~~al~~~~~~~~~~~i~~~~~~fE 264 (565)
++++.. .+....++..+..+.
T Consensus 123 ~~al~~---~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 123 QRCVSL---EPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHH---CSSCHHHHHHHHHHH
T ss_pred HHHHHc---CCCcHHHHHHHHHHH
Confidence 999873 223345555444443
No 363
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.52 E-value=0.0072 Score=60.34 Aligned_cols=222 Identities=9% Similarity=-0.037 Sum_probs=130.6
Q ss_pred hhHHHHHHHhcCCC--CChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcchh
Q 008442 4 ARAHLEEQISRQDL--SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-------DLWLDYTQYLDKTLKVG 74 (565)
Q Consensus 4 ~R~~~E~~l~~~~~--~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~-------~lW~~Y~~~l~~~~~~~ 74 (565)
+...|+.++..... ..+.....+..........|+++.+...|++|+...+... ..+...+. +....+..
T Consensus 120 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~-~y~~~~~~ 198 (378)
T 3q15_A 120 AIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG-NYDDFKHY 198 (378)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH-HHHHTTCH
T ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-HHHHhCCH
Confidence 55667777754321 1233456677777777788999999999999998765432 13333333 33345578
Q ss_pred hHHHHHHHHHHHcCC---CCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cccccHHHHHHHHHHHHHHHHH
Q 008442 75 NVVRDVYSRATKNCP---WVG---ELWVRSLLSLERSRASEEEISTVFEKSLL-----CAFSTFEEYLDLFLTRIDGLRR 143 (565)
Q Consensus 75 ~~~~~v~erAl~~~p---~~~---~lW~~yi~~le~~~~~~~~~~~if~ral~-----~~~~~~~~~~~~~~~~~~~~~r 143 (565)
+.+...|++|+..++ ... .++..... +-...+..+++...|++|+. ..+.....+..+-..+..
T Consensus 199 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 273 (378)
T 3q15_A 199 DKALPHLEAALELAMDIQNDRFIAISLLNIAN-SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK---- 273 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH----
Confidence 889999999998543 221 22222222 33346889999999999997 222222222222221110
Q ss_pred HhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHccchHHHH
Q 008442 144 RILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLEAW 220 (565)
Q Consensus 144 ~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~e~~l~~~~~~~~lw 220 (565)
..++..+...|++++....... .+.....+.....+....+ + +.+|..++++. ...+....++
T Consensus 274 ----------~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 274 ----------AGQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQAVYKETV-DERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp ----------TTCHHHHHHHHHHHHHHCCTTC--CSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 0144556666776666543211 1222222333344444444 5 44555555441 1134445688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 221 QSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 221 ~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...+.+....|+++.|...|++++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999999999986
No 364
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.48 E-value=0.024 Score=54.73 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=107.4
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------GELWVRSLLSLERSRASEE 110 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~------~~lW~~yi~~le~~~~~~~ 110 (565)
++++.+..+|+++.. +....+..+.+...|++|+...+.. ...|..... +-...++.+
T Consensus 30 ~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~~ 93 (307)
T 2ifu_A 30 PDYDSAASEYAKAAV---------------AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM-MLKDLQRMP 93 (307)
T ss_dssp CCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCGG
T ss_pred CCHHHHHHHHHHHHH---------------HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCCHH
Confidence 455566666666532 1223346677888888888754321 123333222 233457788
Q ss_pred HHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 008442 111 EISTVFEKSLLCAF--STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (565)
Q Consensus 111 ~~~~if~ral~~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (565)
++...|++|+.... .........+....... . . .++......|++++.+.... .........+...
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~------~----~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~l 161 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLM------E----P-LDLSKAVHLYQQAAAVFENE-ERLRQAAELIGKA 161 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------T----T-TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------H----c-CCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 88888988886321 11111111111111111 0 0 15566677788777766431 1111224566677
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHccch------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 189 AHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 189 a~~e~~~~~~~~~ar~i~e~~l~~~~~~------~~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
+.+....+ ++++|..+|++++...+.. ...|+..+......|+++.|...|++++
T Consensus 162 g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQ-KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888 9999999999999874322 3466666777778899999999999998
No 365
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.45 E-value=0.0024 Score=51.50 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=78.0
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (565)
.+...|+.++...|. +...|..++......|+.+.+..+|++++...|.+..+|...+..... .++.+.+...|+
T Consensus 27 ~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (125)
T 1na0_A 27 EAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 356778888887765 677899999988899999999999999999999999999988876554 447788999999
Q ss_pred HHHHcCCCCHHHHHHHHH
Q 008442 83 RATKNCPWVGELWVRSLL 100 (565)
Q Consensus 83 rAl~~~p~~~~lW~~yi~ 100 (565)
+++...|....+|.....
T Consensus 102 ~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 102 KALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHH
Confidence 999999988877766543
No 366
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.45 E-value=0.0058 Score=54.72 Aligned_cols=103 Identities=11% Similarity=-0.139 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----------------DLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~----------------~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
....|..........++++.+..+|++++...|.++ .+|..++.... ..+..+.+...|++|+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 455677888878889999999999999999999887 78888776554 4457788999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 008442 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~ 126 (565)
...|.....|......+ ...+..+.+...|++++...+..
T Consensus 116 ~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVAN-MYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHSTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCcccHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHCCCc
Confidence 99999998888877644 44688999999999999865543
No 367
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.45 E-value=0.00051 Score=55.91 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=46.1
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.+|...+ .++.+...|..........|+++.+...|++++...|.+..+|..++..+.. .+..+.+...|++
T Consensus 9 A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 9 AVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQGVELLLK 86 (117)
T ss_dssp CHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 3445555555421 1233455555555555555555556666666666666555555555543332 2244555555666
Q ss_pred HHHcCCCCHHH
Q 008442 84 ATKNCPWVGEL 94 (565)
Q Consensus 84 Al~~~p~~~~l 94 (565)
++...|.+..+
T Consensus 87 al~~~p~~~~~ 97 (117)
T 3k9i_A 87 IIAETSDDETI 97 (117)
T ss_dssp HHHHHCCCHHH
T ss_pred HHHhCCCcHHH
Confidence 65555555443
No 368
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00078 Score=57.84 Aligned_cols=88 Identities=9% Similarity=-0.083 Sum_probs=61.2
Q ss_pred CchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--
Q 008442 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR-- 106 (565)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~---------~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~-- 106 (565)
.++.+...|++++..+|.+.+.|..+..-+..... ..+.+...|++||...|.....|...-..+....
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 34567788888888888888888877764443221 2356888888888888888877766544332221
Q ss_pred --------CCHHHHHHHHHHHHhcccc
Q 008442 107 --------ASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 107 --------~~~~~~~~if~ral~~~~~ 125 (565)
+.++++...|++|+...+.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 3678888888888876655
No 369
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00072 Score=54.68 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008442 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (565)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral 120 (565)
.+...|++++...|.+..+|..++..... .+..+.+...|++|+...|.....|..+...+. ..+..+++...|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 34556777777777777777666654433 335566677777777766766666665554332 3566667777777776
Q ss_pred hc
Q 008442 121 LC 122 (565)
Q Consensus 121 ~~ 122 (565)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 370
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.40 E-value=0.00061 Score=64.77 Aligned_cols=195 Identities=8% Similarity=-0.086 Sum_probs=127.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHH-------HHHHhcCCchhHHHHHHHHHhcCCCC-------------------
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYL-------KYEQSSGDPGRVQLLYERAITDFPVS------------------- 56 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi-------~~e~~~~~~~~~~~lyERal~~~p~~------------------- 56 (565)
.++..|..++..+|. ..+.|+..+ ......+....+...+.|++...|..
T Consensus 24 ~A~~~F~~a~~~dP~----~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 24 RSLDLFTEITNYDES----ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHhChh----hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 478899999999998 889999884 44433333345556778888854422
Q ss_pred --HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcccccHHHHHHH
Q 008442 57 --SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS-LERSRASEEEISTVFEKSLLCAFSTFEEYLDL 133 (565)
Q Consensus 57 --~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~-le~~~~~~~~~~~if~ral~~~~~~~~~~~~~ 133 (565)
.++++.|+..+.... ..+.+.++|+.++...|... ..|+.. +-...+..+.+...|+.++..+.+....-+.+
T Consensus 100 ~r~dl~LayA~~L~~~g-~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQG-NYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp SHHHHHHHHHHHHHHHT-CHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 468888998766544 77889999999888767443 334322 33346889999999998776542211111222
Q ss_pred HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCC--ch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008442 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT--DG-LLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (565)
Q Consensus 134 ~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~--~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (565)
++-.. + .....|.+|+.++....... +. ....+...+.....+| +.++|+.+|++++
T Consensus 176 ~LG~a--l-----------------~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG-r~deA~~~l~~a~ 235 (282)
T 4f3v_A 176 AHGVA--A-----------------ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG-NESAAVALLEWLQ 235 (282)
T ss_dssp HHHHH--H-----------------HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHHHH--H-----------------HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 22111 0 11133555555555554322 22 3456677777888889 9999999999999
Q ss_pred HHccchHHHHHHHHHH
Q 008442 211 KISGAMLEAWQSYISM 226 (565)
Q Consensus 211 ~~~~~~~~lw~~yi~~ 226 (565)
...|. ..+|....+.
T Consensus 236 a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 236 TTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHSCC-HHHHHHHHCT
T ss_pred hcCCc-HHHHHHHhCC
Confidence 99998 8877766543
No 371
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.33 E-value=0.00096 Score=54.23 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhcC---CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008442 165 QRASDYLSEQMKN---TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (565)
Q Consensus 165 ~~a~~~l~~~~~~---~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~ 241 (565)
++|+.++...+.. .+.....+...+.++...+ ++++|...|++++...|++..+|..++......|+++.|...|+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444443 2445677888888888888 99999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 008442 242 RCYSK 246 (565)
Q Consensus 242 ~al~~ 246 (565)
+++..
T Consensus 86 ~al~~ 90 (117)
T 3k9i_A 86 KIIAE 90 (117)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99973
No 372
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.31 E-value=0.0016 Score=51.52 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q 008442 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (565)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~ 265 (565)
...+.+....+ +++.|..+|++++...|....+|..++......|+++.|..+|++++.. .+......+|........
T Consensus 10 ~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAG-NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHHH
Confidence 34444555555 7777777777777777777777777777777777777777777777762 111003345555555555
Q ss_pred Hh-CCHHHHHHHHHHH
Q 008442 266 EY-GTLEDFDHSVQKV 280 (565)
Q Consensus 266 ~~-G~~~~~~~~~~k~ 280 (565)
.. |+.+.+...+.++
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 88 YIEGKEVEAEIAEARA 103 (112)
T ss_dssp TCSSCSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 56 6666655555544
No 373
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.30 E-value=0.0037 Score=51.20 Aligned_cols=62 Identities=6% Similarity=-0.037 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+...+......+ +++.|...|++++...|++ ...|...+......|+++.|...|++++.
T Consensus 40 ~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 40 NALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777777778 9999999999999998887 77888888888899999999999999987
No 374
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.30 E-value=0.003 Score=52.29 Aligned_cols=101 Identities=11% Similarity=-0.096 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH----H---H
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG----E---L 94 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~----~---l 94 (565)
....|........+.|+++.+...|++||..+|.+..+|...+.... ..+..+.+...|++||...|... . +
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 44567788888888999999999999999999999999998876444 45578889999999998765432 2 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 008442 95 WVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (565)
Q Consensus 95 W~~yi~~le~~~~~~~~~~~if~ral~~~~ 124 (565)
|..... .....+.++++...|++++...+
T Consensus 86 ~~~lg~-~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 86 MSRAGN-AFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHH-HHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhhCc
Confidence 322222 33346889999999999997543
No 375
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.28 E-value=0.002 Score=51.93 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=63.4
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..+...+...+.....|..++.++...+ +++.|...|++++...|.....|..++......|+++.|+..|++++.
T Consensus 6 ~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 6 ERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344434445567778888888888 999999999999999999999999999999999999999999999986
No 376
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.28 E-value=0.0032 Score=56.88 Aligned_cols=102 Identities=4% Similarity=-0.129 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCH---------
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--------- 92 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~--------- 92 (565)
+...|..........|+.+.+...|++++...|.+...|..++..... .+..+.+...|++|+...|...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 456888888888888999999999999999999999999888875544 4477788999999999777654
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 93 -------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 93 -------~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
.+|......+ ...+..+.+...|++++...+.
T Consensus 115 ~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCccchHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCcc
Confidence 6666655533 3467888999999999876543
No 377
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.27 E-value=0.008 Score=51.75 Aligned_cols=103 Identities=11% Similarity=-0.088 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITD------------------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~------------------~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
....|..-.......|+++.+...|++||.. .|.+..+|...+.... ..+..+.+...|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 4567888888888899999999999999998 6666678887776444 34477889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 008442 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (565)
Q Consensus 84 Al~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~ 126 (565)
||...|.....|......+ ...+.++++...|++|+...+..
T Consensus 89 al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKAR-IAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhcCCcchHHHHHHHHHH-HHHhcHHHHHHHHHHHHhcCCCC
Confidence 9999999999888877644 44788999999999999876553
No 378
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.27 E-value=0.0064 Score=50.33 Aligned_cols=95 Identities=7% Similarity=-0.029 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~ 262 (565)
..|...+......+ +++.|..+|++++...|++..+|...+......|+++.|...|++++.. . +.....|.....
T Consensus 10 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 10 QELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--D-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C-chhHHHHHHHHH
Confidence 44555566666666 7788888888888877777778887777777788888888888888762 1 223344544455
Q ss_pred HHHHhCCHHHHHHHHHHHh
Q 008442 263 FEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 263 fE~~~G~~~~~~~~~~k~~ 281 (565)
.-...|+.+.+...+.+++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555677776666666554
No 379
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.22 E-value=0.011 Score=48.28 Aligned_cols=97 Identities=7% Similarity=-0.034 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC---HHHHHHHHH
Q 008442 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLL 100 (565)
Q Consensus 27 ~~yi~~e~~~~~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~---~~lW~~yi~ 100 (565)
..........|+++.+...|++++...|.+. ..|...+.... ..++.+.+...|++++...|.+ ...|.....
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3344455668899999999999999999888 78877776444 3457788999999999999987 666666555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 101 SLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 101 ~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
.+ ...+..+++...|++++...+.
T Consensus 85 ~~-~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 85 SQ-YGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HH-HHcCCHHHHHHHHHHHHHHCCC
Confidence 33 3468899999999999975544
No 380
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.21 E-value=0.013 Score=55.81 Aligned_cols=163 Identities=12% Similarity=-0.003 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHH
Q 008442 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL 133 (565)
Q Consensus 54 p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~ 133 (565)
|.+...|...+..+.. .+..+.+...|++|+...|....+|......+ ...+..+++...|++|+...+.....+..+
T Consensus 1 p~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4456667776665544 34778899999999999999999998877644 447889999999999998776655544433
Q ss_pred HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Q 008442 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (565)
Q Consensus 134 ~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~ 213 (565)
-..+.. ..++..+...|.+++............ .++.... ..++...........
T Consensus 79 g~~~~~--------------~g~~~~A~~~~~~al~l~p~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 79 GQCQLE--------------MESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALR---------IAKKKRWNSIEERRI 133 (281)
T ss_dssp HHHHHH--------------TTCHHHHHHHHHHHHHHHHHTTCCCCS--HHHHHHH---------HHHHHHHHHHHHTCC
T ss_pred HHHHHH--------------cCCHHHHHHHHHHHHHhCccchhhHHH--HHHHHHH---------HHHHHHHHHHHHHHH
Confidence 333221 014555666677666654322111111 1222111 111112222222234
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 214 GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 214 ~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+....++..+..+. .|+.+.|.+.|++++.
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHE 163 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc
Confidence 55555655555554 5788889888988876
No 381
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.20 E-value=0.01 Score=53.36 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~ 242 (565)
-|++|+..+...+. +....|...+.+....+ +++.|...|++++...|....+|...+......|+++.|...|++
T Consensus 21 ~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 21 DWKGALDAFSAVQD---PHSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp CHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 35556666655542 23457777888888888 999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCC--------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 243 CYSKRFTGTG--------------SEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 243 al~~~~~~~~--------------~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
++.. .+.+. ...+|......-...|+.+.+...+++++
T Consensus 97 al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 97 ALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9973 22211 11444444445556788888777776664
No 382
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.17 E-value=0.0082 Score=61.87 Aligned_cols=103 Identities=12% Similarity=-0.063 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~---------------~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (565)
.....|..........++++.+...|++||..+|.+ ..+|..++..+. ..+..+.+...|++||
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 356788888888889999999999999999999988 578888776544 4457888999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 008442 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (565)
Q Consensus 86 ~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~ 125 (565)
...|.....|......+ ...+.++++...|++|+...+.
T Consensus 345 ~~~p~~~~a~~~~g~a~-~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQ-LLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTC--
T ss_pred hcCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC
Confidence 99999988888877644 4468899999999999986654
No 383
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.14 E-value=0.036 Score=50.24 Aligned_cols=178 Identities=10% Similarity=-0.081 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 008442 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS--RASEEEISTVFEKS 119 (565)
Q Consensus 42 ~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~--~~~~~~~~~if~ra 119 (565)
+...|+++... .++..+......... .++.+.+...|++|+..- ....+......+... ..+.+++...|++|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44567777665 556666655544433 346666777777777642 233333322212211 01677777777777
Q ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCc--hhHHHHHHHHHHHHH---
Q 008442 120 LLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD--GLLRLYAYWAHLEQS--- 194 (565)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~--~~~~l~~~~a~~e~~--- 194 (565)
+..... ..+..+-..+. ....+ ...+.+|+.++.......+ .....+..++.++..
T Consensus 80 ~~~g~~--~a~~~Lg~~y~--------~g~g~---------~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 80 VEAGSK--SGEIVLARVLV--------NRQAG---------ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp HHTTCH--HHHHHHHHHHT--------CGGGS---------SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred HHCCCH--HHHHHHHHHHH--------cCCCC---------ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC
Confidence 654322 11111111111 00000 0123444444444444333 123344455555555
Q ss_pred -cCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH-cC-----ChHHHHHHHHHHHh
Q 008442 195 -MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE-LD-----HINEARSIYKRCYS 245 (565)
Q Consensus 195 -~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~-~~-----~~~~aR~i~~~al~ 245 (565)
.. ++++|...|++++.. +.+...+.....+... .| +++.|...|++++.
T Consensus 141 ~~~-d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 141 GPE-DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp SSC-CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 44 899999999999988 3333444555555433 34 89999999999986
No 384
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.0067 Score=45.97 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
....|..........++.+.+...|++++...|.+..+|..++..... .++.+.+...|++++...|.....|.....
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 566788888888888999999999999999999999999988875554 447788999999999999988888876554
No 385
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.13 E-value=0.11 Score=59.65 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=101.1
Q ss_pred CCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 37 ~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
++.+++..+++|+ .++.+|..|+...+..+ ..+.+.+.|++| .+..-|..-+..++. .+.++++...|
T Consensus 1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G-~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC-CHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3445555555544 66788888887665444 556677777776 344566665555544 56777777777
Q ss_pred HHHHhcccc-cHHHHHHHHHHHHHH---HHHHhhccccchhhhhH---HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH
Q 008442 117 EKSLLCAFS-TFEEYLDLFLTRIDG---LRRRILFSGEVEGVLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYWA 189 (565)
Q Consensus 117 ~ral~~~~~-~~~~~~~~~~~~~~~---~~r~~~~~~~~e~~~~~---~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a 189 (565)
..|...... .....+.+..+..+. +...+. .....++..+ ..-...|+.|..++... ..|...+
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~rleele~fI~-~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTNRLAELEEFIN-GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence 777754311 111111111111110 111110 0000111111 11112344455554332 2344555
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHcc-------------------------chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008442 190 HLEQSMGKDMVSARGVWERLLKISG-------------------------AMLEAWQSYISMEIELDHINEARSIYKRCY 244 (565)
Q Consensus 190 ~~e~~~~~~~~~ar~i~e~~l~~~~-------------------------~~~~lw~~yi~~e~~~~~~~~aR~i~~~al 244 (565)
..+.+++ +++.|.+.+.++..... .+.+.....+.++...|.++.|..+|+.+|
T Consensus 1229 ~tLvkLg-e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1229 STLVHLG-EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHhC-CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566666 77777777766632110 011122244556667788888888888887
Q ss_pred hcccCCCCcHHHHHHHHHHHHHh
Q 008442 245 SKRFTGTGSEDICHAWLRFEREY 267 (565)
Q Consensus 245 ~~~~~~~~~~~i~~~~~~fE~~~ 267 (565)
.. + +....+|.....+-.+|
T Consensus 1308 ~L--e-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1308 GL--E-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred cc--C-hhHhHHHHHHHHHHHhC
Confidence 52 2 22334554444444444
No 386
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.0049 Score=52.86 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=70.3
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC----------chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL- 71 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~----------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~- 71 (565)
+++..|+.++..+|. +.+.|..+.......+. ++.+...|++||..+|.+.+.|.....-+....
T Consensus 20 eA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 20 QIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 477888888988887 78888888887766554 458999999999999999999998876555432
Q ss_pred ---------chhhHHHHHHHHHHHcCCCCH
Q 008442 72 ---------KVGNVVRDVYSRATKNCPWVG 92 (565)
Q Consensus 72 ---------~~~~~~~~v~erAl~~~p~~~ 92 (565)
+..+.+...|++||...|.+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 367889999999999999764
No 387
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.09 E-value=0.0011 Score=65.41 Aligned_cols=116 Identities=11% Similarity=-0.011 Sum_probs=65.1
Q ss_pred hhhHHHHHHHhcCCCCChHhH-----------------HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKF-----------------QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~-----------------~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~ 65 (565)
.+...|+.+|...+. +. .+|..+.......++++.+...|+++|...|.+...|..++.
T Consensus 197 ~A~~~y~~Al~~~p~----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 197 EAMQQYEMAIAYMGD----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp HHHHHHHHHHHHSCH----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356678888877764 32 378888888888999999999999999999999999999887
Q ss_pred HHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 66 YLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 66 ~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
.+. ..++.+.+...|++|+...|.+..+|..............+..+.+|.+++...
T Consensus 273 a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 273 AKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHH-TTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 554 455788899999999998898888777655433444455667777888877643
No 388
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.06 E-value=0.0091 Score=51.27 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcchhhHHHHHHHHHHHc--
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV-------SSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKN-- 87 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~-------~~~-----lW~~Y~~~l~~~~~~~~~~~~v~erAl~~-- 87 (565)
....|.....-..+.|+++.+...|++||...|. +.. +|..-..-+. ..+..+.+...|++||..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhh
Confidence 3456777787778889999999999999999998 444 8888776444 445778899999999998
Q ss_pred -----CCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 88 -----CPWVGELW----VRSLLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 88 -----~p~~~~lW----~~yi~~le~~~~~~~~~~~if~ral~~~ 123 (565)
.|.....| ..-...+. ..+..+++...|++|+...
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcC
Confidence 99999999 66655444 4788999999999999754
No 389
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.03 E-value=0.0039 Score=55.84 Aligned_cols=96 Identities=6% Similarity=-0.117 Sum_probs=76.4
Q ss_pred hhHHHHHHHhcCCCCC-hH-----------hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008442 4 ARAHLEEQISRQDLSD-SE-----------KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL 71 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~-~~-----------~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~ 71 (565)
+...|+.+|...|... .. ...+|..+.......|+.+.+...|++++...|.+...|...+..+.. .
T Consensus 57 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~ 135 (198)
T 2fbn_A 57 AIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-F 135 (198)
T ss_dssp HHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-c
Confidence 5567788887665411 00 026788888888889999999999999999999999999998876554 4
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 72 KVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
++.+.+...|++|+...|....+|.....
T Consensus 136 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 136 GFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 47788999999999999999888877655
No 390
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.02 E-value=0.068 Score=47.22 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---cch---HHHHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAM---LEAWQSYISMEIE 229 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~---~~lw~~yi~~e~~ 229 (565)
++......|.+++..+.............+...+.+....+ +++.|...+++++... ++. ..++...+.....
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44455566666666554221111122344556677777788 9999999999999752 222 2345667777888
Q ss_pred cCChHHHHHHHHHHHh
Q 008442 230 LDHINEARSIYKRCYS 245 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~ 245 (565)
.|+++.|...|++++.
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999999986
No 391
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.01 E-value=0.0061 Score=52.50 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC-----------CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKN-----------TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~-----------~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi 224 (565)
++..+...|.+++.++...... .+....+|...+......+ +++.|...++++|...|++...|...+
T Consensus 26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSEVLKREETNEKALFRRA 104 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4556667777777765433211 1223456777788888888 999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 008442 225 SMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 225 ~~e~~~~~~~~aR~i~~~al~ 245 (565)
......|+++.|...|++++.
T Consensus 105 ~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 105 KARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHh
Confidence 999999999999999999987
No 392
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.01 E-value=0.0024 Score=62.99 Aligned_cols=36 Identities=11% Similarity=-0.116 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCH
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS 57 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~ 57 (565)
....|..........++++.+...|++||...|.+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 213 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF 213 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Confidence 345566666666677899999999999999888655
No 393
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.00 E-value=0.024 Score=59.95 Aligned_cols=179 Identities=9% Similarity=-0.028 Sum_probs=116.6
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCC----------chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK- 72 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~----------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~- 72 (565)
+-..++.+|..+|. ++.+|..-.......+. .+.....|+++|..+|.++.+|..-.-. ....+
T Consensus 48 al~~~~~~l~~nP~----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~-l~~l~~ 122 (567)
T 1dce_A 48 VLELTSQILGANPD----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL-LSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHTCSS
T ss_pred HHHHHHHHHHHCch----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccc
Confidence 34667888888887 88999766665555554 6788999999999999999999987644 44555
Q ss_pred -hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHhhccc
Q 008442 73 -VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSG 149 (565)
Q Consensus 73 -~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~ 149 (565)
..+...+.|++|+..-|.+...|......+.......++..+.+++++...+.. .|.+....+... .....
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l------~~~~~ 196 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL------HPQPD 196 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH------SCCCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh------ccccc
Confidence 347789999999999999999998766545543337788888899999876653 333332222110 00000
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcC
Q 008442 150 EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (565)
Q Consensus 150 ~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (565)
.... . ......++++++++..++...+.....|.++.-+....+
T Consensus 197 ~~~~--~-~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 197 SGPQ--G-RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp SSSC--C-SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccc--c-cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 0000 0 000144566666666665544555667877666655444
No 394
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.99 E-value=0.0062 Score=50.28 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccch-------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM-------LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~-------~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...+|...+.++...+ +++.|...|+++|...|+. ..+|......+...|+++.|...|+++|.
T Consensus 41 ~~~~~~nlg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 41 NITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555 6666666666666543322 12333444445555666666666666654
No 395
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.96 E-value=0.094 Score=50.35 Aligned_cols=181 Identities=12% Similarity=-0.011 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008442 42 VQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP--WVGELWVRSLLSLERSRASEEEISTVFEKS 119 (565)
Q Consensus 42 ~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p--~~~~lW~~yi~~le~~~~~~~~~~~if~ra 119 (565)
+...|++.+...+.+...+. ++.-+....++.+.++.++.+++...| .+.++....+. +....+..+.++.+++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~-~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq-i~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELY-LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE-VALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH-HHHHCCCHHHHHHHHHHH
Confidence 34556666655444444444 332333344566677777777776665 45566666555 333356677777777776
Q ss_pred Hhcccc----cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc
Q 008442 120 LLCAFS----TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM 195 (565)
Q Consensus 120 l~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~ 195 (565)
....++ .-...+.+...++.... +.. ++.....+|++ .....+.+......|. .+...
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~-----g~~-----~~q~A~~~f~E-------l~~~~p~~~~~~lLln-~~~~~ 224 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFAT-----NKE-----TATSNFYYYEE-------LSQTFPTWKTQLGLLN-LHLQQ 224 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHH-----TCS-----TTTHHHHHHHH-------HHTTSCSHHHHHHHHH-HHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHh-----CCc-----cHHHHHHHHHH-------HHHhCCCcccHHHHHH-HHHHc
Confidence 654431 11112233333332221 000 11112233332 2222221111111122 45555
Q ss_pred CCChHHHHHHHHHHHHHc----------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 196 GKDMVSARGVWERLLKIS----------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 196 ~~~~~~ar~i~e~~l~~~----------~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+ ++++|..+++.+++.. |++...-...|.+....|+ .|.+++.++..
T Consensus 225 g-~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 225 R-NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp T-CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 6 7777777777655542 5566666666666666665 66677777665
No 396
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.93 E-value=0.35 Score=49.42 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 008442 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSL 120 (565)
Q Consensus 73 ~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~---~~~~~~~~~if~ral 120 (565)
+.+.+...|++|+..-|.....|......+... ..+.+++...|+++.
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 334455555555555554444332222212110 134455555555555
No 397
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.91 E-value=0.021 Score=46.20 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC--CCc---HHHHHH
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG--TGS---EDICHA 259 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~--~~~---~~i~~~ 259 (565)
+...+......+ +++.|..+|++++...|....+|...+......|+++.|..+|++++... +. ... ..++..
T Consensus 7 ~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHHH
Confidence 344455555556 77777777777777777777777777777777777777777777776531 11 111 233333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHh
Q 008442 260 WLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 260 ~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
....-...|+.+.+...+.+++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3344445566666666555554
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.91 E-value=0.0033 Score=47.99 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
.+-++| ++|......||.++|++||. ..|+++.|. -|||.|.+++.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 355556 99999999999999999994 558888874 79999999999999987
No 399
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.89 E-value=0.0028 Score=63.38 Aligned_cols=79 Identities=11% Similarity=-0.092 Sum_probs=64.5
Q ss_pred HhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008442 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (565)
Q Consensus 21 ~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~~yi~ 100 (565)
.....|..+.......++++.+...|++||...|.+...|..++..+. ..++.+.+...|++|+...|....+|..+..
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 366788888888888899999999999999999999999888877554 3457778899999999998988888776554
No 400
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.86 E-value=0.0048 Score=48.45 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...+|..++.++...+ +++.|...|++++...|+...+|..........|+++.|...|++++.
T Consensus 6 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456777788888888 999999999999999999999999999999999999999999999986
No 401
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.012 Score=46.36 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCC
Q 008442 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~ 91 (565)
+...|..........|+.+.+...|++++...|.+..+|..++..+. ..+..+.+...|++|+...|..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc
Confidence 45678888888888999999999999999999999999998887554 4457788999999999998876
No 402
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.84 E-value=0.0046 Score=63.76 Aligned_cols=99 Identities=5% Similarity=-0.065 Sum_probs=75.8
Q ss_pred hhhHHHHHHHhcCCCCC-----------hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 008442 3 NARAHLEEQISRQDLSD-----------SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL 71 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~-----------~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~ 71 (565)
.+...|+.+|...|... +....+|..+.....+.++++.+...|++||...|.+...|...+..+. ..
T Consensus 286 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~ 364 (457)
T 1kt0_A 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LM 364 (457)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-Hc
Confidence 35677888887776520 1115788888888889999999999999999999999999998887554 44
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008442 72 KVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~~~~lW~~yi~~l 102 (565)
++.+.+...|++|+...|....+|......+
T Consensus 365 g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 365 NEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp TCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5788899999999999998888877765533
No 403
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.81 E-value=0.025 Score=42.68 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
...+...+......+ +++.|...|++++...|....+|..++......|+++.|...|++++..
T Consensus 9 ~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345556677777777 9999999999999999999999999999999999999999999999873
No 404
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.44 Score=54.70 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHcC
Q 008442 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELD 231 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~-~~~~~ar~i~e~~l~~~~-----~~~~lw~~yi~~e~~~~ 231 (565)
-..+..|++++.+++..+...+.+..+|..++.++.+.. ..+.++-+.|..-+...+ .+..+|..++-++...|
T Consensus 1290 Ye~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 334456777888888777666666666655555554432 134455556666665544 56778999999998889
Q ss_pred ChHHHHH
Q 008442 232 HINEARS 238 (565)
Q Consensus 232 ~~~~aR~ 238 (565)
++++|..
T Consensus 1370 e~dnA~~ 1376 (1630)
T 1xi4_A 1370 EYDNAII 1376 (1630)
T ss_pred cHHHHHH
Confidence 9988873
No 405
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.78 E-value=0.0018 Score=50.99 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=51.4
Q ss_pred hHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC
Q 008442 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (565)
Q Consensus 20 ~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p 89 (565)
|.+...|..+.......|+++.+...|+++|...|.+...|..+..... ..+..+.+...|++|+...|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhh
Confidence 3466778888887778888888888888888888888888887776544 34466778888888887544
No 406
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.75 E-value=0.0025 Score=66.21 Aligned_cols=90 Identities=12% Similarity=-0.149 Sum_probs=49.8
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (565)
+...|+.+|...|. +...|..+.......|+.+.+...|++|+...|.+...|...+..+.. .+..+.+...|++
T Consensus 25 A~~~~~~Al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~ 99 (477)
T 1wao_1 25 AIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDYET 99 (477)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 44455555555554 455565555555556666666666666666666666666555543332 2345556666666
Q ss_pred HHHcCCCCHHHHHHH
Q 008442 84 ATKNCPWVGELWVRS 98 (565)
Q Consensus 84 Al~~~p~~~~lW~~y 98 (565)
|+...|.....|..+
T Consensus 100 al~~~p~~~~~~~~l 114 (477)
T 1wao_1 100 VVKVKPHDKDAKMKY 114 (477)
T ss_dssp HHHHSTTCTTHHHHH
T ss_pred HHHhCCCCHHHHHHH
Confidence 666555554444443
No 407
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0032 Score=49.00 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEE
Q 008442 391 ECTAFLSNINLKA-T----YEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSI 464 (565)
Q Consensus 391 ~~~l~V~nl~~~~-~----~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v 464 (565)
.++|+|.||+.++ . ...++.+|..|+.+........ -+=..|.|.++++|.+|-. +++..+.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3689999998875 2 2577999999998877665542 1246899999999999976 8999999999999
Q ss_pred eecCCC
Q 008442 465 ARSNPK 470 (565)
Q Consensus 465 ~~a~~~ 470 (565)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998854
No 408
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.73 E-value=0.16 Score=44.64 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---ccc----hHHHHHHHHHHHHH
Q 008442 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SGA----MLEAWQSYISMEIE 229 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~~----~~~lw~~yi~~e~~ 229 (565)
+......|.+++...... ...+.....+...+.+....+ +++.|...|++++.. .++ ...++.........
T Consensus 42 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 119 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKS-GDHTAEHRALHQVGMVERMAG-NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH 119 (203)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 344445555555544321 111222344555677777778 999999999999987 442 23466777777888
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHH---HHHHHHHHHhCCHHHHHHHHHHHhhHHHHH
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDIC---HAWLRFEREYGTLEDFDHSVQKVTPRLEEL 287 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~---~~~~~fE~~~G~~~~~~~~~~k~~~~~~~~ 287 (565)
.|+++.|...|++++...-....+.... ..........|+.+.+...+.+++...++.
T Consensus 120 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 120 FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999986321222333222 233344556789888888887776655443
No 409
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.72 E-value=0.011 Score=59.11 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHhhh---------cCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQM---------KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~---------~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~ 226 (565)
++..+...|.+++.++.... ...+....+|..++..+...+ ++++|...|++++...|++..+|...+..
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 316 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DWQGAVDSCLEALEIDPSNTKALYRRAQG 316 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45566667777776543321 112334567777888888888 99999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 008442 227 EIELDHINEARSIYKRCYS 245 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~ 245 (565)
....|+++.|...|++|+.
T Consensus 317 ~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 317 WQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999999999997
No 410
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.72 E-value=0.22 Score=44.89 Aligned_cols=185 Identities=12% Similarity=-0.048 Sum_probs=110.9
Q ss_pred hhhHHHHHHHhcCCCCChHhHHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--chhhHHHHH
Q 008442 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDV 80 (565)
Q Consensus 3 ~~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~~~~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~v 80 (565)
++...|+.+.... +...+..+.......++++.+...|++|+.. .++..+..+........ .+.+.+...
T Consensus 4 eA~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 3556777777653 4566777777766789999999999999986 56777777665544311 167789999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHhhccccchhhh
Q 008442 81 YSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (565)
Q Consensus 81 ~erAl~~~p~~~~lW~~yi~~le~---~~~~~~~~~~if~ral~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~ 155 (565)
|++|+.. .....+......+.. ...+.+++...|++|+..... ....+..+-..+.. ...+. .
T Consensus 76 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~--------g~g~~--~ 143 (212)
T 3rjv_A 76 AEKAVEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS--------GVHGP--E 143 (212)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH--------TSSSS--C
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc--------CCCCC--C
Confidence 9999874 344444443332221 146789999999999987652 12222222222221 00011 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHccc
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-----GKDMVSARGVWERLLKISGA 215 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-----~~~~~~ar~i~e~~l~~~~~ 215 (565)
++......|+++.+. ..++. .+..++.++... ..++++|...|++++..-..
T Consensus 144 d~~~A~~~~~~A~~~------~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL------SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp CHHHHHHHHHHHHHT------SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHc------CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 444455555555442 01111 233344455442 33899999999999987443
No 411
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.63 E-value=0.078 Score=54.33 Aligned_cols=110 Identities=9% Similarity=0.035 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHccchHHHHHHHHHH-H--HHcCChHHH
Q 008442 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM---GKDMVSARGVWERLLKISGAMLEAWQSYISM-E--IELDHINEA 236 (565)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~---~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~-e--~~~~~~~~a 236 (565)
.+.+++.++.......+.....+..++.++... .+++++|...|+++. +.+...+.....+ + ...++++.|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 456666666666555554444444445554332 148889999999988 5566666666665 3 457899999
Q ss_pred HHHHHHHHhcccCCCCcHHHHHHHHHHHHHhC-----CHHHHHHHHHHHh
Q 008442 237 RSIYKRCYSKRFTGTGSEDICHAWLRFEREYG-----TLEDFDHSVQKVT 281 (565)
Q Consensus 237 R~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G-----~~~~~~~~~~k~~ 281 (565)
...|++++.. ..+...+..-.-++ .| +.+.....+.++.
T Consensus 271 ~~~~~~Aa~~----g~~~A~~~Lg~~y~--~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 271 MKYLDNGRAA----DQPRAELLLGKLYY--EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHH--HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHh
Confidence 9999999862 23332222222222 45 6666655555554
No 412
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.58 E-value=0.43 Score=45.22 Aligned_cols=165 Identities=12% Similarity=-0.021 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHHHHhcccccHHH--HHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch--h
Q 008442 106 RASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG--L 181 (565)
Q Consensus 106 ~~~~~~~~~if~ral~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~--~ 181 (565)
.+..+++...|++++......... .+........+ .... .++..+...|.+++.... ...+. .
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~A~~~~~~al~~~~---~~~~~~~~ 154 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAY----VLKK------VDYEYCILELKKLLNQQL---TGIDVYQN 154 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH----HHTS------SCHHHHHHHHHHHHTTCC---CSSCTTHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHH----HhcC------CCHHHHHHHHHHHHHHHh---cCCchHHH
Confidence 578899999999998754332111 11111111000 0000 023333344444433221 11222 2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---ccch----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCc-
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SGAM----LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS- 253 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~~~~----~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~- 253 (565)
...+...+.++...+ +++.|...|++++.. .++. ..++...+......|+++.|...|++++.........
T Consensus 155 ~~~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 445666777888888 999999999999953 4442 2577888888899999999999999998642111111
Q ss_pred --HHHHHHHHHHHHHhCCHHHH-HHHHHHHhhHH
Q 008442 254 --EDICHAWLRFEREYGTLEDF-DHSVQKVTPRL 284 (565)
Q Consensus 254 --~~i~~~~~~fE~~~G~~~~~-~~~~~k~~~~~ 284 (565)
..++......-...|+.+.+ ...+++++.-.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 23333334445566877666 65566665443
No 413
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.54 E-value=0.02 Score=43.74 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHH-cCCcccCCe-----EEE
Q 008442 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK--SRGLAYVDFIDDEHLAAAVA-KNKQMFLGK-----KLS 463 (565)
Q Consensus 392 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~a~~-~~~~~~~g~-----~l~ 463 (565)
++|.|++||+.+|++++.+.+...+.+.....+..+.+.+ .-+-|||.|.+.+++..-.. .+|+.+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999998877777665543332 23678999999998888887 688876322 334
Q ss_pred EeecC
Q 008442 464 IARSN 468 (565)
Q Consensus 464 v~~a~ 468 (565)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 414
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.52 E-value=0.017 Score=54.41 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=47.8
Q ss_pred hhHHHHHHHhcCCCCChHhHHHHHHHHHHHHh-----cCCchhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcchhhHH
Q 008442 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS-----SGDPGRVQLLYERAITDFPVS-SDLWLDYTQYLDKTLKVGNVV 77 (565)
Q Consensus 4 ~R~~~E~~l~~~~~~~~~~~~~W~~yi~~e~~-----~~~~~~~~~lyERal~~~p~~-~~lW~~Y~~~l~~~~~~~~~~ 77 (565)
++..+|.+|.-+|. ..+-..|..+..+... .|+++++...|+|||..+|.. .+.+..|++|+....++.+.+
T Consensus 182 A~a~lerAleLDP~--~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 182 AVMMLERACDLWPS--YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHhCCC--cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 45556666666554 1122355555555554 356666666666666666643 666666666655444455556
Q ss_pred HHHHHHHHHcCC
Q 008442 78 RDVYSRATKNCP 89 (565)
Q Consensus 78 ~~v~erAl~~~p 89 (565)
...+++|+..-|
T Consensus 260 ~~~L~kAL~a~p 271 (301)
T 3u64_A 260 DEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHCCG
T ss_pred HHHHHHHHcCCC
Confidence 666666666444
No 415
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.47 E-value=0.25 Score=51.30 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
|...+....+.+ +++.|..+|+.+... ...+...|...++.....|+.+.|.++|++.-.
T Consensus 143 yn~lI~~~~~~g-~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 143 YGPALFGFCRKG-DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 344444455667 888999999988876 444577888888888889999999999988854
No 416
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.44 E-value=0.1 Score=43.57 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccc------hHHHHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEAWQSYISMEIE 229 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~------~~~lw~~yi~~e~~ 229 (565)
++......|.+++....... ........+...+.+....+ ++++|...|++++...+. ...++...+.....
T Consensus 24 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 24 NFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 44556666777766654321 11112345556677777888 999999999999986332 24577777888889
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDI---CHAWLRFEREYGTLEDFDHSVQKVTP 282 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i---~~~~~~fE~~~G~~~~~~~~~~k~~~ 282 (565)
.|+++.|...|++++........+... +..........|+.+.+...+.+++.
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999998642222223222 22233344556777777666666543
No 417
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.43 E-value=0.021 Score=48.99 Aligned_cols=89 Identities=15% Similarity=0.006 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhc----CCc-hhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------ccchHHHH---
Q 008442 156 DYSLIRETFQRASDYLSEQMK----NTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAW--- 220 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~----~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-------~~~~~~lw--- 220 (565)
+++.....|.+|+.+...... ... ....+|...+.....++ ++++|...|+++|.. .|+....|
T Consensus 26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~ 104 (159)
T 2hr2_A 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYFNRRGELNQDEGKLWISA 104 (159)
T ss_dssp CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence 455666777777776544211 000 01226777777788888 999999999999999 99999999
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 221 -QSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 221 -~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
..-.......|+++.|...|++++.
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888999999999999999987
No 418
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.36 E-value=0.19 Score=49.29 Aligned_cols=62 Identities=10% Similarity=-0.027 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
...+..++-.....+ +++.|...+++++..+++ +..|..........|+.+.|.+.|.+|+.
T Consensus 277 a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 277 SIIYQIKAVSALVKG-KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555544444456 999999999999999865 55666667777889999999999999987
No 419
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.014 Score=46.89 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccCC-eEEEEeec
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFLG-KKLSIARS 467 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~g-~~l~v~~a 467 (565)
..+.|.|-++|+.. ...|-..|++||.|.+.... ++ ..+-.|.|.++.+|++||..||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 46789999999885 57778889999999988762 22 248999999999999999999999985 56777775
No 420
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.18 Score=50.74 Aligned_cols=195 Identities=11% Similarity=0.034 Sum_probs=118.2
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHH--
Q 008442 34 QSSGDPGRVQLLYERAITDFPVSSD-----------------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL-- 94 (565)
Q Consensus 34 ~~~~~~~~~~~lyERal~~~p~~~~-----------------lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~l-- 94 (565)
.+.|++..+..+|..++...+...+ .....+.. ....++.+.+.+.|.+++...+....-
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~-y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQL-YVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3468899999999999998876543 12333332 233457788999999998865443221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 008442 95 ---WVRSLLSLERSRASEEEISTVFEKSLLCAFS------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (565)
Q Consensus 95 ---W~~yi~~le~~~~~~~~~~~if~ral~~~~~------~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~ 165 (565)
-...+..+....+..+.+..++++++..... ....+..+-..+.+ ..++..+...+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------------~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ--------------KKQYKDSLALIN 159 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--------------HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--------------ccChHHHHHHHH
Confidence 1111222333446778888888888753211 01111111111110 013444555555
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---cch----HHHHHHHHHHHHHcCChHHHHH
Q 008442 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAM----LEAWQSYISMEIELDHINEARS 238 (565)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~----~~lw~~yi~~e~~~~~~~~aR~ 238 (565)
++...+.. ..+.+....++...++++...+ ++++|+.+|++++... ++. ..++.....+....++++.|..
T Consensus 160 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 160 DLLREFKK-LDDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHTT-SSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHh-cccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55444322 2223344567777788888888 9999999999999762 222 3466666666777899999999
Q ss_pred HHHHHHh
Q 008442 239 IYKRCYS 245 (565)
Q Consensus 239 i~~~al~ 245 (565)
.|..++.
T Consensus 238 ~~~~a~~ 244 (434)
T 4b4t_Q 238 YFFESFE 244 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 421
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.26 E-value=0.0062 Score=46.68 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=44.1
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 394 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
||+-++|.+....||.++|++|| -..|+++.|. -|||.|.+++.|..|+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 44449999999999999999999 5678888874 79999999999999997
No 422
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.25 E-value=0.018 Score=59.70 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~ 235 (565)
+++.+...|+++++. .+.....|..++..+...+ ++++|...|++++...|+....|...+......|+++.
T Consensus 21 ~~~~A~~~~~~Al~~-------~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 21 DYENAIKFYSQAIEL-------NPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp CHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444555555443 4445667888888888888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 008442 236 ARSIYKRCYSK 246 (565)
Q Consensus 236 aR~i~~~al~~ 246 (565)
|.+.|++++..
T Consensus 93 A~~~~~~al~~ 103 (477)
T 1wao_1 93 ALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999973
No 423
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.27 Score=49.41 Aligned_cols=198 Identities=8% Similarity=-0.072 Sum_probs=117.0
Q ss_pred chhhHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHH-HHHH
Q 008442 72 KVGNVVRDVYSRATKNCPWVGE-----------------LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE-YLDL 133 (565)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~~~~-----------------lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~-~~~~ 133 (565)
++.+.+.++|..++...|.... ....... +-...+..+++...|.+++......-.. ....
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~-~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQ-LYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3567788999999987764221 1111112 3334678889999999887632110011 1111
Q ss_pred HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Q 008442 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (565)
Q Consensus 134 ~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~ 213 (565)
....++.+ .... .+.+.....+..++....... .......++...+.+....+ ++..|..+++.++...
T Consensus 97 ~~~~l~~~----~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 97 LKTLIEKF----EQVP-----DSLDDQIFVCEKSIEFAKREK-RVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHH----CSCC-----SCHHHHHHHHHHHHHHHHHSS-CCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HhCC-----CCHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH
Confidence 11111111 0000 134455566776666654322 22234567778899998999 9999999999998762
Q ss_pred ------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHH----HHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 214 ------GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDI----CHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 214 ------~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i----~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
+..+++++.-+.+....|++++|+.+|++++........+..+ +.....+....|+.+.+...+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2346788888999999999999999999998643333334332 2222233333466665555444443
No 424
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.14 E-value=0.82 Score=43.24 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHhcccccHHH--HHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch--h
Q 008442 106 RASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG--L 181 (565)
Q Consensus 106 ~~~~~~~~~if~ral~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~--~ 181 (565)
.++.+++..+|++++......... ++..+.....+. . .. .++..+...|.+++... ....+. .
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----~-~~-----~~~~~Ai~~~~~al~~~---~~~~~~~~~ 154 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV----L-KK-----VDYEYCILELKKLLNQQ---LTGIDVYQN 154 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH----T-TS-----SCHHHHHHHHHHHHHTC---CCCSCTTHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH----H-cc-----cCHHHHHHHHHHHHHHh---cccccHHHH
Confidence 578999999999999754332221 111111111110 0 00 13444555566555532 111222 2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---c----cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCc-
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI---S----GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS- 253 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~---~----~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~- 253 (565)
..++...+.++...+ ++++|..+|+++++. . +....++...+......|+++.|...|++|+.........
T Consensus 155 ~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 155 LYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 335566777888888 999999999999964 2 2234578888888999999999999999998642122111
Q ss_pred --HHHHHHHHHHHHHhC-CHHHHHHHHHHHhhHH
Q 008442 254 --EDICHAWLRFEREYG-TLEDFDHSVQKVTPRL 284 (565)
Q Consensus 254 --~~i~~~~~~fE~~~G-~~~~~~~~~~k~~~~~ 284 (565)
..++...-..-...| ..+.+...+++++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 233333334445567 4466666666665443
No 425
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.091 Score=41.08 Aligned_cols=62 Identities=10% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.|...+......+ ++++|...|++++...|.+..+|..........|+++.|...|++++..
T Consensus 6 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4555666666777 9999999999999999999999999999999999999999999999973
No 426
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.10 E-value=0.049 Score=41.97 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=53.1
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCHHHHH
Q 008442 33 EQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (565)
Q Consensus 33 e~~~~~~~~~~~lyERal~~~p~~~~-lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~~~~lW~ 96 (565)
....|+.+.+...|++++...|.+.. +|..++..... .+..+.+...|++|+...|.....|.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34568889999999999999999999 99988875554 44778899999999999998888773
No 427
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.09 E-value=0.48 Score=39.30 Aligned_cols=88 Identities=10% Similarity=-0.009 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHc---cc---hHHHHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GA---MLEAWQSYISMEIE 229 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~---~~~lw~~yi~~e~~ 229 (565)
++......|.+++....... ........+...+.+....+ +++.|...+++++... ++ ...++...+.....
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 44455566666666553321 11122345556677777888 9999999999999763 22 23466777777888
Q ss_pred cCChHHHHHHHHHHHh
Q 008442 230 LDHINEARSIYKRCYS 245 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~ 245 (565)
.|+++.|...|++++.
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999999986
No 428
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.79 E-value=0.098 Score=40.16 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=50.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHccchHH-HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 190 HLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 190 ~~e~~~~~~~~~ar~i~e~~l~~~~~~~~-lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
......+ +++.|...|++++...|++.. +|...+......|+++.|...|++++..
T Consensus 8 ~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444566 999999999999999999998 9999999999999999999999999973
No 429
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.76 E-value=1.3 Score=45.87 Aligned_cols=162 Identities=10% Similarity=0.014 Sum_probs=104.2
Q ss_pred hcCCHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 008442 105 SRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (565)
Q Consensus 105 ~~~~~~~~~~if~ral~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 183 (565)
..++++++..+|++....+.. ....|-.+...+. +...........++..+..+|.+- .... ..+...
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~-----~~~~~~~~~~~~~l~~A~~lf~~M---~~~G---~~Pd~~ 106 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCS-----LAEAATESSPNPGLSRGFDIFKQM---IVDK---VVPNEA 106 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-----TCCCCSSSSCCHHHHHHHHHHHHH---HHTT---CCCCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-----hCCchhhhhhcchHHHHHHHHHHH---HHhC---CCCCHH
Confidence 357889999999998875432 2222322222111 000000000001233333444422 1121 233344
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~ 262 (565)
.|...+....+.+ +++.|..+|+.+... ...+...|...|......|+++.|.++|+..... ........|...+.
T Consensus 107 tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 107 TFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES--EVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Confidence 5666777778888 999999999999886 4456888999999999999999999999999874 33345567888888
Q ss_pred HHHHhCCHHHHHHHHHHH
Q 008442 263 FEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 263 fE~~~G~~~~~~~~~~k~ 280 (565)
--...|+.+.+..++++-
T Consensus 184 ~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHH
Confidence 888899998888777653
No 430
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.75 E-value=0.048 Score=42.12 Aligned_cols=68 Identities=12% Similarity=-0.151 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhcCC---chhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC
Q 008442 22 KFQQYMIYLKYEQSSGD---PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (565)
Q Consensus 22 ~~~~W~~yi~~e~~~~~---~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~ 90 (565)
+.+.|..|.....-.++ ...+..+|++||...|.++..++........ .++...+...|++++...|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 44555555555433222 3455555555555555555555554443332 22444555555555554443
No 431
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.57 E-value=0.08 Score=40.84 Aligned_cols=66 Identities=12% Similarity=-0.105 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 181 LLRLYAYWAHLEQSMGK--DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 181 ~~~l~~~~a~~e~~~~~--~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
...++..|+......++ ..+.|+.+++++|...|+++..++.........|+++.|...|++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788887765542 2689999999999999999999999999999999999999999999973
No 432
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.43 E-value=0.011 Score=48.02 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeec------------CCCC-CcceEEEEEecCHHHHHHHHHcCCc
Q 008442 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHD------------KFTG-KSRGLAYVDFIDDEHLAAAVAKNKQ 455 (565)
Q Consensus 390 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~------------~~~g-~~~g~afv~f~~~~~a~~a~~~~~~ 455 (565)
....|.|-+.|++.+ ..+-..|++||.|.+ ..+..+ +..+ .....-.|.|.++.+|.+||..||.
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 346788889987654 566678999999876 221110 0001 1235779999999999999999999
Q ss_pred ccCCeEEEEeecCC
Q 008442 456 MFLGKKLSIARSNP 469 (565)
Q Consensus 456 ~~~g~~l~v~~a~~ 469 (565)
.|+|..|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888754
No 433
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.18 E-value=3 Score=41.96 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------------ccchHHHHHHHHHHHHHcC---------------ChH
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI------------SGAMLEAWQSYISMEIELD---------------HIN 234 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~------------~~~~~~lw~~yi~~e~~~~---------------~~~ 234 (565)
..+|..++-++...+ +++.|....-..... ...+.++....+.|+.... +.+
T Consensus 282 ~~~w~e~~~ly~~~~-e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 282 AHLWAELVFLYDKYE-EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT 360 (449)
T ss_dssp TTCHHHHHHHHHHTT-CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHH
T ss_pred HHHHHHHHHHHHhhc-hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcH
Confidence 357888888887777 888776543322211 3445778888888875332 344
Q ss_pred HHHHHHHHHHhc--------ccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008442 235 EARSIYKRCYSK--------RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (565)
Q Consensus 235 ~aR~i~~~al~~--------~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~ 280 (565)
++..+|++.=.- .....+...|=+++.++--+.+|.+.++..++..
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~~~ 414 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAY 414 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 455555544110 0001122345566666666666777666666543
No 434
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.87 E-value=1.3 Score=45.69 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------ccchHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISM 226 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--------~~~~~~lw~~yi~~ 226 (565)
+++.+...++++++.....+.. ++.....+...+.++...| ++++|..+++++|.. +|+........+..
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4566777788888877776664 4445677777888998989 999999999999976 23334566677777
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 008442 227 EIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~~ 246 (565)
+..+|+++.|..+|++|+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999853
No 435
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=94.69 E-value=0.093 Score=52.94 Aligned_cols=82 Identities=10% Similarity=0.108 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHcCChHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK-DMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDHINE 235 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~-~~~~ar~i~e~~l~~~~-----~~~~lw~~yi~~e~~~~~~~~ 235 (565)
.-|++++.+++..+...+....+|..++-++.+... .+.+..+.|...+...+ .+..+|..++-+....+++++
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 457788888888887666667778777777765430 23334444544444445 567799999999999999999
Q ss_pred HHHHHHHH
Q 008442 236 ARSIYKRC 243 (565)
Q Consensus 236 aR~i~~~a 243 (565)
|....-..
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 87655444
No 436
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.62 E-value=0.091 Score=40.38 Aligned_cols=78 Identities=10% Similarity=0.108 Sum_probs=52.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHH-cCCcccCC---e--EE
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK--SRGLAYVDFIDDEHLAAAVA-KNKQMFLG---K--KL 462 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~a~~-~~~~~~~g---~--~l 462 (565)
.-+|.|+.||+.+|++++.+.+...-.+.....+..+.+.+ .-.-|||.|.+.+++..-.. .+|..+.+ . +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 46899999999999999988887765543333322221211 12568999999999888887 68887532 2 45
Q ss_pred EEeecC
Q 008442 463 SIARSN 468 (565)
Q Consensus 463 ~v~~a~ 468 (565)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 437
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.43 E-value=0.021 Score=57.79 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCcccC
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVAKNKQMFL 458 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 458 (565)
.++|||. .|..+++.+|.++|++||.|.++.+..++ | -||.|+|.+.+++.+++...+..+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSCCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhccCCCcc
Confidence 4799997 79999999999999999999999887653 3 5999999999999987764444433
No 438
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.32 E-value=0.28 Score=49.75 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------ccchHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISM 226 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~--------~~~~~~lw~~yi~~ 226 (565)
+++.+...++++++.....+.. ++.....+...+.++...| ++++|..+++++|.. +|+-...+...+..
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556667778887777666654 3444566777888888888 999999999999976 23334466677777
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 008442 227 EIELDHINEARSIYKRCYS 245 (565)
Q Consensus 227 e~~~~~~~~aR~i~~~al~ 245 (565)
+..+|+++.|..+|++|+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8899999999999999986
No 439
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.12 E-value=0.63 Score=47.95 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHHhcc---c--cc---HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 008442 105 SRASEEEISTVFEKSLLCA---F--ST---FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (565)
Q Consensus 105 ~~~~~~~~~~if~ral~~~---~--~~---~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~ 176 (565)
.++..+++..+|+++|... + .. ...+..+...|.+ ..+++.+...++++++.....+.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~--------------~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY--------------LQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--------------TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--------------hcCHHHHHHHHHHHHHHHHHHcC
Confidence 4678889999999998521 1 11 1122222222211 12667788889999988887776
Q ss_pred CC-chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----c-cch---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 177 NT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----S-GAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 177 ~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----~-~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.. +.....+...+.++...| ++++|..+|++++.. + +++ .++-....+.+...+.++.|-.+|.++..
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 444566777889999999 999999999999976 2 222 23333333334455566667777766644
No 440
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.91 E-value=1.3 Score=42.38 Aligned_cols=114 Identities=10% Similarity=0.134 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhhcCCc--hhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcc------chHH--HHHHHHHHHHHcC
Q 008442 162 ETFQRASDYLSEQMKNTD--GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG------AMLE--AWQSYISMEIELD 231 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~--~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~------~~~~--lw~~yi~~e~~~~ 231 (565)
.-++.|+.++...+...+ ...+++...++++...+ +.+.|+++++++....| +... +...|+.+...-+
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 446667777766665553 56788888899999988 99999999999988887 3332 3345556665555
Q ss_pred ChHHHHHHHHHHHhcccCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 232 HINEARSIYKRCYSKRFTG-TGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 232 ~~~~aR~i~~~al~~~~~~-~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
.+..|..+|+.+... ++. ..+..+|. ....-|+.+.++..++...
T Consensus 193 ~~q~A~~~f~El~~~-~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 193 TATSNFYYYEELSQT-FPTWKTQLGLLN----LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp TTTHHHHHHHHHHTT-SCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh-CCCcccHHHHHH----HHHHcCCHHHHHHHHHHHH
Confidence 899999999998763 221 01233444 4556699998888876543
No 441
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.55 E-value=6.7 Score=38.35 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=82.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHhcCC---HHHHH
Q 008442 45 LYERAITDFPVSSDLWLDYTQYLDKTL----KVGNVVRDVYSRATKNCPWVGELWVR----SLLSLERSRAS---EEEIS 113 (565)
Q Consensus 45 lyERal~~~p~~~~lW~~Y~~~l~~~~----~~~~~~~~v~erAl~~~p~~~~lW~~----yi~~le~~~~~---~~~~~ 113 (565)
--+|+...-|.+.+.|-.|+....... .....++.+|++|+..-|.....|.. |+...-..... ...+.
T Consensus 182 e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 345666778888888888876543211 23466899999999999987765543 33111111011 12222
Q ss_pred HHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 008442 114 TVFEKSLLCA--FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHL 191 (565)
Q Consensus 114 ~if~ral~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~ 191 (565)
..+.++.... +.....+..+..... . . .+++.....+++|+.. ++. .-.|...+.+
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l--~------~------gd~d~A~~~l~rAl~L-------n~s-~~a~~llG~~ 319 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSAL--V------K------GKTDESYQAINTGIDL-------EMS-WLNYVLLGKV 319 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHH--H------H------TCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHH--h------C------CCHHHHHHHHHHHHhc-------CCC-HHHHHHHHHH
Confidence 3333222111 112222211111110 0 0 1333444445554443 222 2344566777
Q ss_pred HHHcCCChHHHHHHHHHHHHHccchH-HHHHH
Q 008442 192 EQSMGKDMVSARGVWERLLKISGAML-EAWQS 222 (565)
Q Consensus 192 e~~~~~~~~~ar~i~e~~l~~~~~~~-~lw~~ 222 (565)
....| +.+.|.+.|++++...|... -+|..
T Consensus 320 ~~~~G-~~~eA~e~~~~AlrL~P~~~t~~~~~ 350 (372)
T 3ly7_A 320 YEMKG-MNREAADAYLTAFNLRPGANTLYWIE 350 (372)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHCC-CHHHHHHHHHHHHhcCCCcChHHHHh
Confidence 77778 99999999999999988753 34443
No 442
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.44 E-value=0.13 Score=44.13 Aligned_cols=34 Identities=6% Similarity=0.141 Sum_probs=26.9
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCc
Q 008442 420 SIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQ 455 (565)
Q Consensus 420 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~ 455 (565)
.+.|..+. ++++|||||+|.++++|++|+. +++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35566664 4789999999999999999997 5543
No 443
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.02 E-value=0.79 Score=46.40 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----c-cch---HHHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI----S-GAM---LEAWQSYISMEI 228 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~----~-~~~---~~lw~~yi~~e~ 228 (565)
+.+...++++++.....+.. ++.....+...+.++...| ++++|..+++++|.. + +++ ...+...+..+.
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 33444455444443333333 3334566677788888888 999999999999975 2 333 446667777788
Q ss_pred HcCChHHHHHHHHHHHh
Q 008442 229 ELDHINEARSIYKRCYS 245 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~ 245 (565)
..|+++.|..+|++|+.
T Consensus 383 ~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 383 HQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 99999999999999985
No 444
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.97 E-value=0.2 Score=42.37 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCcceEEEEEecCHHHHHHHHH-c-CCcccCCeEEEEeecCCC
Q 008442 429 TGKSRGLAYVDFIDDEHLAAAVA-K-NKQMFLGKKLSIARSNPK 470 (565)
Q Consensus 429 ~g~~~g~afv~f~~~~~a~~a~~-~-~~~~~~g~~l~v~~a~~~ 470 (565)
....+|+++|+|.+.++|++|+. + |+..++| ++.|..+.+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 45678999999999999999997 8 9999999 9999987653
No 445
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.36 E-value=2.7 Score=35.41 Aligned_cols=84 Identities=8% Similarity=-0.105 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRATKNC-P-WVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~--~~~~~~~v~erAl~~~-p-~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
.++..|++.+...+.+.+....|+--+.++.. +..+...+++..++.- | ...+.+.. +-..-...++.++++..+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~-LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFY-LAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHH-HHHHHHHccCHHHHHHHH
Confidence 45566777776666777777777654443221 3335666677666655 4 11222211 111113356677777777
Q ss_pred HHHHhcccc
Q 008442 117 EKSLLCAFS 125 (565)
Q Consensus 117 ~ral~~~~~ 125 (565)
+++|+..|.
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 777776554
No 446
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.13 E-value=5.6 Score=30.64 Aligned_cols=70 Identities=19% Similarity=0.114 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~ 226 (565)
++..+..-|+.|+...............++..++....+.+ +++.|...++++++..|++..+.....-|
T Consensus 20 ~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 44445555565555443221112334567777788888888 89999999999998888876665444433
No 447
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.44 E-value=12 Score=30.45 Aligned_cols=77 Identities=6% Similarity=0.024 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH----cCChHHHH
Q 008442 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEAR 237 (565)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~----~~~~~~aR 237 (565)
..+.+|+.++.......++... ++.++.... .+++|...|+++... .+...+.....+... .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~-~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQI-NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTS-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCC-CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3345555555554443333222 444444433 788899999999987 335556666666655 67999999
Q ss_pred HHHHHHHh
Q 008442 238 SIYKRCYS 245 (565)
Q Consensus 238 ~i~~~al~ 245 (565)
..|+++..
T Consensus 82 ~~~~~Aa~ 89 (138)
T 1klx_A 82 QYYSKACG 89 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999986
No 448
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.15 E-value=7.9 Score=31.58 Aligned_cols=57 Identities=7% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHH---cCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 008442 187 YWAHLEQS---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYS 245 (565)
Q Consensus 187 ~~a~~e~~---~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~----~~~~~~aR~i~~~al~ 245 (565)
.++.++.. ..+|+++|...|+++... .+...+.....+... .++++.|...|++|..
T Consensus 62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 62 FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 44455544 134999999999999987 335566666676666 7899999999999986
No 449
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.12 E-value=8.4 Score=29.59 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHc-------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 188 WAHLEQSMGKDMVSARGVWERLLKIS-------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~e~~l~~~-------~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.+......+ ++..|..-|+.+++.. .....++..++......|+++.|..++++++.
T Consensus 11 lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 11 LGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344555666 9999999999999863 23578899999989999999999999999986
No 450
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.00 E-value=6.1 Score=39.81 Aligned_cols=88 Identities=8% Similarity=0.071 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHH-----ccch---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---ccCCCCcHHHHHHHHH---H
Q 008442 198 DMVSARGVWERLLKI-----SGAM---LEAWQSYISMEIELDHINEARSIYKRCYSK---RFTGTGSEDICHAWLR---F 263 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~-----~~~~---~~lw~~yi~~e~~~~~~~~aR~i~~~al~~---~~~~~~~~~i~~~~~~---f 263 (565)
++++|..+|+++|.. .+++ .......+..+...|+++.|..+|+++|.. .+..+.| ++...+.. .
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~~ 391 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-NVASMWLKLGRL 391 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHH
Confidence 789999999999986 2333 456666777788899999999999999854 3344444 45444544 4
Q ss_pred HHHhCCHHHHHHHHHHHhhHHHH
Q 008442 264 EREYGTLEDFDHSVQKVTPRLEE 286 (565)
Q Consensus 264 E~~~G~~~~~~~~~~k~~~~~~~ 286 (565)
-...|..+.+...+++++..+..
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHH
Confidence 44568888888888888766554
No 451
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=82.00 E-value=13 Score=31.12 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHc-c-chHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 198 DMVSARGVWERLLKIS-G-AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~-~-~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
++.++..+++.+++.. | ...+.+...+-...+.+++++|+..++++|..
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5668999999999986 6 44666666666668899999999999999973
No 452
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=79.90 E-value=32 Score=34.42 Aligned_cols=92 Identities=8% Similarity=-0.161 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhcc-----ccc---HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 008442 106 RASEEEISTVFEKSLLCA-----FST---FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (565)
Q Consensus 106 ~~~~~~~~~if~ral~~~-----~~~---~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~ 177 (565)
.+..+++..++++++... ... ...+-.+...|.. ..+++.+...+++++......+..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~--------------~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN--------------LGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH--------------HTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh--------------hccHHHHHHHHHHHHHhHHHHcCC
Confidence 467888999999999632 111 1112222222211 026677788888888888777765
Q ss_pred C-chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 178 T-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 178 ~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
. +.....+...+.++...| ++++|..+|++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g-~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQG-MFPQAMKNLRLAFDI 400 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 4 444556667888998989 999999999999976
No 453
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.49 E-value=6.3 Score=40.56 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=43.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 008442 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA 451 (565)
Q Consensus 391 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 451 (565)
...++|+ +|..+...+|.+.|+.||. .+|+++.+. .|||.|.+.+.|..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHH
Confidence 3466665 8999999999999999995 467766553 79999999999999887
No 454
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.52 E-value=22 Score=34.98 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008442 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (565)
Q Consensus 73 ~~~~~~~v~erAl~~~p~~~~lW~~yi~~le~~~~~~~~~~~if~ral 120 (565)
....+...+++++...|....+|...|..+.. .+...++...|+++-
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVK 232 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 44455566666666666666666666664433 455555555555544
No 455
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=68.47 E-value=1 Score=44.17 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=8.6
Q ss_pred CCCCHHHHHHHhc
Q 008442 401 LKATYEDLRRFFS 413 (565)
Q Consensus 401 ~~~~~~~l~~~f~ 413 (565)
..+++++|+.+..
T Consensus 227 ~~vt~~~l~~i~~ 239 (358)
T 2pk2_A 227 ATVTLELLDELTH 239 (358)
T ss_dssp SSCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 3567888777654
No 456
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=68.18 E-value=1.1 Score=44.10 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=8.7
Q ss_pred HHHHHHhcccCCCCcHHHHHHH
Q 008442 239 IYKRCYSKRFTGTGSEDICHAW 260 (565)
Q Consensus 239 i~~~al~~~~~~~~~~~i~~~~ 260 (565)
++-+.|...+....|-.++..|
T Consensus 139 ~IL~~L~f~L~v~~P~~fL~~~ 160 (358)
T 2pk2_A 139 IILQTLGFELTIDHPHTHVVKC 160 (358)
T ss_dssp HHHHHTTTCCCCCCTTHHHHHH
T ss_pred HHHHHcCCceeCCCHHHHHHHH
Confidence 3334443333334444444333
No 457
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=67.71 E-value=92 Score=33.59 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
.|...-++|....+ +++-|.++-.+++...|+....|...+..+...|++++|--.+.-+
T Consensus 338 ~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35556688888877 9999999999999999999999999999999999999998776665
No 458
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=65.51 E-value=78 Score=28.52 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
+....+|+.|.++....+...+| .+.|.+.|+-|+....+++++|..+-..++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667888888877655555443 4667778888877766688887776555554
No 459
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=64.84 E-value=80 Score=28.44 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008442 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (565)
Q Consensus 134 ~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l 210 (565)
+....||.|-........+...-.+....+|+.|.++....+...+| .+.|.+.|+-|+....+++++|..+-..++
T Consensus 126 ~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 126 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555433332222121122345668888888877666655444 467777888888777668888776655444
No 460
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=64.54 E-value=87 Score=28.71 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
+....+|+.|.++....+...+| .+.|.+.|+-|+....+++++|..+-..++.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44567788777776555554333 4566677777776665577777666555543
No 461
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=63.04 E-value=89 Score=28.37 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
+....+|+.|.++....+...+| .+.|.+.|+-|+....+++++|..+-..++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567888888877655655443 4667777887877766688877766555443
No 462
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=61.06 E-value=1e+02 Score=28.28 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
+....+|+.|.+.. ..+...+| .+.|.+.|+-|+....+++++|..+-..++..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667888888877 55554433 46677788888777666888887776665543
No 463
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=60.53 E-value=1e+02 Score=28.19 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 158 SLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 158 ~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
+....+|+.|.++....+...+| .+.|.+.|+-|+....+++++|..+-..++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567888888876655655443 4667777888877766688877766555443
No 464
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=58.83 E-value=69 Score=25.71 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhcCCch-hHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHccchH
Q 008442 164 FQRASDYLSEQMKNTDG-LLRLYAYWAHL-EQSMGKDMVSARGVWERLLKISGAML 217 (565)
Q Consensus 164 ~~~a~~~l~~~~~~~~~-~~~l~~~~a~~-e~~~~~~~~~ar~i~e~~l~~~~~~~ 217 (565)
..+++.+|...+....+ .-+-..+|..+ ..+.+ ++++|+..++.+|+..|++.
T Consensus 54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg-~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCH
Confidence 34455555555544422 33334444333 45666 88888888888888877654
No 465
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=55.45 E-value=1.3e+02 Score=27.69 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhh--cC-CchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008442 157 YSLIRETFQRASDYLSEQM--KN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (565)
Q Consensus 157 ~~~~~~~~~~a~~~l~~~~--~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~ 212 (565)
.+....+|+.|.++....+ .. +|-.+.|.+.|+-|+....+++++|..+-..++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456678888888776555 43 33346677778888777666888887777766654
No 466
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.32 E-value=60 Score=32.36 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008442 184 LYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (565)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~---~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~ 246 (565)
.+...+++....| +++.|.++|.++...+ ....++|+.-+.+....+|+..+...+.++-..
T Consensus 133 ~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4557788888999 9999999999998873 445889999999999999999999999999653
No 467
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=49.95 E-value=86 Score=25.15 Aligned_cols=86 Identities=10% Similarity=-0.116 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008442 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRATKNC-PWVGELWVRSLLSLERSRASEEEISTVF 116 (565)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~--~~~~~~~v~erAl~~~-p~~~~lW~~yi~~le~~~~~~~~~~~if 116 (565)
...+..|++++...+.+.+.=..|+--+.++.. +...-..+++-.++.. |....-..-|+-.-....+++++++..+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345666777776666666766666644443331 1122445666655544 3111111222222223357777777777
Q ss_pred HHHHhcccc
Q 008442 117 EKSLLCAFS 125 (565)
Q Consensus 117 ~ral~~~~~ 125 (565)
+.+|...+.
T Consensus 98 ~~lL~~eP~ 106 (126)
T 1nzn_A 98 RGLLQTEPQ 106 (126)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 777776554
No 468
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=46.01 E-value=59 Score=26.38 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHHccch-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGAM-LEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~-~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
++.++..+++.+++..|.. -+.+...+-=..+.|++++||...+.+|.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4556777777777766533 33332222223467788888888887776
No 469
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.12 E-value=1.1e+02 Score=30.69 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-cc-----chHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHH
Q 008442 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-----AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED 255 (565)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~-~~-----~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~ 255 (565)
.++...+++++...| ++..|..++..+... .. ..+++++.=+.+....+|+.+|+.++.++..+.+....++.
T Consensus 137 arl~~~La~i~e~~g-~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEG-KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 355667888888888 999999999988764 21 12568888888888899999999999998654444444444
Q ss_pred H
Q 008442 256 I 256 (565)
Q Consensus 256 i 256 (565)
+
T Consensus 216 l 216 (445)
T 4b4t_P 216 L 216 (445)
T ss_dssp H
T ss_pred H
Confidence 3
No 470
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=44.81 E-value=80 Score=30.89 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
.++..+...+ +...+...+..++..+|-...+|..++......|+...|...|+++-.
T Consensus 176 ~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666777 899999999999999999999999999999999999999999988844
No 471
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=43.18 E-value=2.9e+02 Score=30.99 Aligned_cols=90 Identities=7% Similarity=-0.139 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH----HccchHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHH
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLK----ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~----~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~ 260 (565)
+..+++-..+.| .+++|..+|..+.. ....++-.|...|+-....|.++.|.++|+..... ........+...
T Consensus 130 ynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G~~PDvvTYntL 206 (1134)
T 3spa_A 130 LLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA--GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCCHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCcHHHHHHH
Confidence 445566666777 88888888866542 23445778888888888888888888888888653 222223344444
Q ss_pred HHHHHHhCC-HHHHHHHH
Q 008442 261 LRFEREYGT-LEDFDHSV 277 (565)
Q Consensus 261 ~~fE~~~G~-~~~~~~~~ 277 (565)
+.---+.|. .+.+..++
T Consensus 207 I~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHH
Confidence 443333353 33443333
No 472
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=42.77 E-value=6.6 Score=31.04 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCeEEEcCCCCCCCHHH
Q 008442 389 TDECTAFLSNINLKATYED 407 (565)
Q Consensus 389 ~~~~~l~V~nl~~~~~~~~ 407 (565)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3446899999999998763
No 473
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=41.76 E-value=3.2e+02 Score=30.75 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc-CCCCHHHHHHH
Q 008442 24 QQYMIYLKYEQSSGDPGRVQLLYERAIT----DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN-CPWVGELWVRS 98 (565)
Q Consensus 24 ~~W~~yi~~e~~~~~~~~~~~lyERal~----~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~-~p~~~~lW~~y 98 (565)
..+..+|+-.-+.|..++|..+|+..-. -+..+...|...|.-+-+.+ ..+.+.++|+..... |.-+.-.+..-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999976532 35677888888887665555 677899999999874 33355566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc
Q 008442 99 LLSLERSRASEEEISTVFEKSLLCA 123 (565)
Q Consensus 99 i~~le~~~~~~~~~~~if~ral~~~ 123 (565)
|..+-+.....+.+..+|+.....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 6666665555678889999988654
No 474
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.41 E-value=52 Score=32.79 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 008442 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (565)
Q Consensus 217 ~~lw~~yi~~e~~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~k~~ 281 (565)
...+...++|....|++++|.++|.++..........-+++...++.....||...+...+.++.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34788999999999999999999999987554555566788888888888999999988887764
No 475
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.08 E-value=1.2e+02 Score=22.16 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred HcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE 264 (565)
..|+++.|-.+|..||. +|..++..|
T Consensus 31 ~~g~y~eAl~lY~~aie----------~l~~alk~e 56 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE----------VLAQLVSLY 56 (83)
T ss_dssp HTTCHHHHHHHHHHHHH----------HHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHH----------HHHHHHHHC
Confidence 56888888888888874 445556655
No 476
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.70 E-value=1.2e+02 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=19.2
Q ss_pred HcCChHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Q 008442 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFE 264 (565)
Q Consensus 229 ~~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~~fE 264 (565)
..|+++.|-.+|..||. +|..++..|
T Consensus 23 ~~g~y~eAl~lY~~aie----------~l~~~lk~e 48 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE----------VLSQIIVLY 48 (83)
T ss_dssp HTTCHHHHHHHHHHHHH----------HHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHH----------HHHHHHHHC
Confidence 56889999999998874 445556555
No 477
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=34.74 E-value=1.3e+02 Score=24.67 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHH-HHHcCChHHHHHHHHHHHh
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISM-EIELDHINEARSIYKRCYS 245 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~-e~~~~~~~~aR~i~~~al~ 245 (565)
++.++..+++.++...|..-.=++.|+-+ ..+.|++++||...+.+|.
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455556666666554333333333332 2356666666666666665
No 478
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.83 E-value=1.1e+02 Score=26.09 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=38.0
Q ss_pred eEEEcCCCC---------CCCHHHHHHHh--ccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHc
Q 008442 393 TAFLSNINL---------KATYEDLRRFF--SDVGGVSSIRILHDKFTGKSRGLAYVDFID-DEHLAAAVAK 452 (565)
Q Consensus 393 ~l~V~nl~~---------~~~~~~l~~~f--~~~G~i~~~~~~~~~~~g~~~g~afv~f~~-~~~a~~a~~~ 452 (565)
++.|-|+|. ..+...|++.| +.|.++.-..+ ..+ . -+.|++.|.|.+ -.....|+.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~-~-Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY-L-GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS-S-BEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC-C-CCceeEEEEecCChHHHHHHHHH
Confidence 455566665 24457899977 99987664444 332 3 367999999985 5566777765
No 479
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.41 E-value=4.4e+02 Score=25.67 Aligned_cols=130 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHH------HHHHHHHH
Q 008442 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ------SYISMEIE 229 (565)
Q Consensus 156 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~------~yi~~e~~ 229 (565)
+.+.+...+.....++....+ ....++....+++-....+..+.--++...+++-....-..|+ ..+.++..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~k--ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~ 111 (394)
T 3txn_A 34 KAKELADLIKVTRPFLSSISK--AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFD 111 (394)
T ss_dssp CHHHHHHHHHHTTTGGGGSCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHhcccCCCCcHHHHHHHH---HHHHHhCCHHHHHHHHHHHhhHHHHH
Q 008442 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWL---RFEREYGTLEDFDHSVQKVTPRLEEL 287 (565)
Q Consensus 230 ~~~~~~aR~i~~~al~~~~~~~~~~~i~~~~~---~fE~~~G~~~~~~~~~~k~~~~~~~~ 287 (565)
.|++.+|-+++.+.+......+++..+.+.++ ++-...||...++.++.++......+
T Consensus 112 ~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 112 TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
No 480
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.68 E-value=1.8e+02 Score=24.81 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008442 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (565)
Q Consensus 198 ~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~a 243 (565)
+++.|.++.+.+ ++...|....+.-...|+++-|..+|.++
T Consensus 20 ~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 20 NLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 566555554433 34556666666666666666666666655
No 481
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=30.79 E-value=15 Score=31.97 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=3.2
Q ss_pred CCCHHHHH
Q 008442 402 KATYEDLR 409 (565)
Q Consensus 402 ~~~~~~l~ 409 (565)
.++...|+
T Consensus 124 vVD~aRi~ 131 (215)
T 2l6f_A 124 VIDQARLK 131 (215)
Confidence 34434444
No 482
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.70 E-value=1.6e+02 Score=21.69 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=14.7
Q ss_pred HHcCChHHHHHHHHHHHh
Q 008442 228 IELDHINEARSIYKRCYS 245 (565)
Q Consensus 228 ~~~~~~~~aR~i~~~al~ 245 (565)
...|+++.|..+|..|+.
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 457888999999999875
No 483
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=23.09 E-value=4e+02 Score=23.69 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008442 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (565)
Q Consensus 134 ~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~l~~~~a~~e~~~~~~~~~ar~i~e~~l~ 211 (565)
+....||.|-....... +.+....+|+.|.+.....+...+| .+.|.+.|+-|+....+++++|..+-..++.
T Consensus 123 ~KMKGDYyRYlAE~~~g-----~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 123 LKVKSDISRYKLEFGLC-----SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHccc-----cHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455565433332221 2556778899998887665554333 4677888888887777799998888887765
No 484
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer complex, transferase-replicat complex; HET: DNA; 3.00A {Bacillus phage PHI29} SCOP: a.263.1.1
Probab=23.04 E-value=3.3e+02 Score=22.70 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Q 008442 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (565)
Q Consensus 93 ~lW~~yi~~le~~~~~~~~~~~if~ral~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~~~~~~~~~~~a~~~l~ 172 (565)
++-..+|..+|..-+....+.++.++.-+.|++ ++..+++.+.+.--.....++. ..+.....+.+...|+.
T Consensus 145 qlq~NFI~sVEgsFNS~~~aDelve~LkkiPpD---DFyElfl~~~EISFE~FDSEg~-----~veasE~~l~ki~sYl~ 216 (230)
T 2ex3_B 145 QLQLNFIKSVEGSFNSFDAADELIEELKKIPPD---DFYELFLRISEISFEEFDSEGN-----TVENVEGNVYKILSYLE 216 (230)
T ss_dssp HHHHHHHHHHHHHHCBSHHHHHHHHHHHTSCHH---HHHHHHHHHTTTC-------CC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHhcCCcH---HHHHHHHHHhhhhhhhcCCCCc-----hHHhHHHHHHHHHHHHH
Confidence 577788888888777777788888887777655 3444444432111111111111 23444455666666665
Q ss_pred hhh
Q 008442 173 EQM 175 (565)
Q Consensus 173 ~~~ 175 (565)
.+.
T Consensus 217 ~Y~ 219 (230)
T 2ex3_B 217 QYR 219 (230)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 485
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.12 E-value=2.1e+02 Score=20.04 Aligned_cols=67 Identities=16% Similarity=0.338 Sum_probs=39.6
Q ss_pred eEEEcCC-CCCCCHHHHHHHhccCCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH-cCCcccCCeEEEEe
Q 008442 393 TAFLSNI-NLKATYEDLRRFFSDVGG-----VSSIRILHDKFTGKSRGLAYVDFIDDEHLAAAVA-KNKQMFLGKKLSIA 465 (565)
Q Consensus 393 ~l~V~nl-~~~~~~~~l~~~f~~~G~-----i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 465 (565)
++||..= -..+...+|-.++..-+. |-.|++.. .|.||+-.... +..++. +++..+.|+++.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 4555322 234666777777765443 55666632 38999987644 666776 78888999999887
Q ss_pred ecC
Q 008442 466 RSN 468 (565)
Q Consensus 466 ~a~ 468 (565)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 754
No 486
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=20.77 E-value=3.1e+02 Score=23.13 Aligned_cols=60 Identities=15% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---------AWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~---------lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+..+++.....+ -++.|.-+...++....++.+ +-..|++.....+++.+|-..|++||.
T Consensus 23 l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
No 487
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.38 E-value=3.4e+02 Score=27.44 Aligned_cols=62 Identities=5% Similarity=0.015 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHccchHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008442 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (565)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~e~~l~~~~~~~~lw~~yi~~e~~~~~~~~aR~i~~~al~ 245 (565)
+......++..... ..+.|+..|.+|+...|++-..+...+-+....|+.-.|.-.|-|++.
T Consensus 153 r~l~~LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 34455666666655 788999999999999999988888888888887777666666666654
Done!