Query 008443
Match_columns 565
No_of_seqs 460 out of 3864
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 12:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 5.9E-66 1.3E-70 513.5 35.7 369 122-497 92-464 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 1.3E-64 2.8E-69 471.8 32.3 365 119-498 59-424 (476)
3 PTZ00110 helicase; Provisional 100.0 9E-62 2E-66 511.2 51.8 408 79-497 91-500 (545)
4 KOG0333 U5 snRNP-like RNA heli 100.0 8.4E-62 1.8E-66 468.4 31.7 393 90-496 218-639 (673)
5 PLN00206 DEAD-box ATP-dependen 100.0 4.7E-60 1E-64 497.1 47.8 405 80-497 83-491 (518)
6 KOG0341 DEAD-box protein abstr 100.0 2.9E-62 6.3E-67 454.8 20.6 423 61-497 114-545 (610)
7 COG0513 SrmB Superfamily II DN 100.0 2.4E-59 5.2E-64 487.9 43.3 364 121-496 29-396 (513)
8 KOG0328 Predicted ATP-dependen 100.0 1.1E-60 2.4E-65 426.9 28.4 365 117-496 23-388 (400)
9 KOG0336 ATP-dependent RNA heli 100.0 2.8E-60 6E-65 444.5 30.8 411 78-498 173-589 (629)
10 PRK04837 ATP-dependent RNA hel 100.0 6.5E-59 1.4E-63 480.1 43.7 368 119-496 6-377 (423)
11 PRK10590 ATP-dependent RNA hel 100.0 2.8E-58 6E-63 478.2 43.1 365 122-496 2-367 (456)
12 PRK11634 ATP-dependent RNA hel 100.0 7.5E-58 1.6E-62 485.1 45.3 360 121-494 6-365 (629)
13 PRK11776 ATP-dependent RNA hel 100.0 9.8E-58 2.1E-62 476.5 43.1 360 121-495 4-363 (460)
14 PRK04537 ATP-dependent RNA hel 100.0 1.9E-57 4.2E-62 479.7 43.1 366 120-495 8-378 (572)
15 KOG0342 ATP-dependent RNA heli 100.0 7.2E-58 1.6E-62 439.4 34.2 364 120-492 81-448 (543)
16 KOG0338 ATP-dependent RNA heli 100.0 2.2E-58 4.8E-63 443.0 28.7 362 120-492 180-544 (691)
17 PRK11192 ATP-dependent RNA hel 100.0 1.5E-56 3.3E-61 464.8 44.3 363 122-495 2-366 (434)
18 KOG0339 ATP-dependent RNA heli 100.0 2.1E-56 4.6E-61 428.8 36.4 408 80-500 186-594 (731)
19 PRK01297 ATP-dependent RNA hel 100.0 2.3E-55 4.9E-60 459.7 44.3 369 118-496 84-457 (475)
20 KOG0335 ATP-dependent RNA heli 100.0 9.7E-57 2.1E-61 439.6 30.5 387 111-498 64-461 (482)
21 KOG0340 ATP-dependent RNA heli 100.0 2.1E-56 4.5E-61 412.1 30.5 365 119-495 5-375 (442)
22 KOG0345 ATP-dependent RNA heli 100.0 8.2E-56 1.8E-60 422.2 34.6 359 122-489 5-372 (567)
23 PTZ00424 helicase 45; Provisio 100.0 9.9E-55 2.1E-59 448.3 42.9 360 120-494 27-387 (401)
24 KOG0326 ATP-dependent RNA heli 100.0 3.6E-57 7.8E-62 411.0 19.4 360 120-495 84-443 (459)
25 KOG0348 ATP-dependent RNA heli 100.0 1.1E-55 2.5E-60 426.7 30.7 372 116-492 131-565 (708)
26 KOG0343 RNA Helicase [RNA proc 100.0 4.6E-55 1E-59 423.8 30.9 380 92-492 49-434 (758)
27 KOG0334 RNA helicase [RNA proc 100.0 3.3E-54 7.2E-59 450.2 35.4 453 75-545 321-779 (997)
28 KOG0346 RNA helicase [RNA proc 100.0 1.7E-53 3.6E-58 402.9 33.2 367 121-495 19-424 (569)
29 KOG0347 RNA helicase [RNA proc 100.0 1.9E-53 4.1E-58 412.6 20.5 384 117-517 177-606 (731)
30 TIGR03817 DECH_helic helicase/ 100.0 5.2E-49 1.1E-53 425.7 40.3 349 127-494 20-401 (742)
31 KOG0332 ATP-dependent RNA heli 100.0 3E-49 6.4E-54 366.9 29.9 362 116-495 85-458 (477)
32 KOG0327 Translation initiation 100.0 2.2E-49 4.7E-54 371.4 26.1 358 120-494 25-383 (397)
33 TIGR00614 recQ_fam ATP-depende 100.0 7.4E-48 1.6E-52 401.3 34.5 326 137-491 5-343 (470)
34 KOG4284 DEAD box protein [Tran 100.0 2.2E-48 4.7E-53 383.3 25.5 360 116-483 20-381 (980)
35 KOG0337 ATP-dependent RNA heli 100.0 1.2E-48 2.5E-53 368.3 22.6 361 120-493 20-380 (529)
36 PLN03137 ATP-dependent DNA hel 100.0 3.8E-47 8.2E-52 407.5 37.2 336 127-490 443-796 (1195)
37 KOG0350 DEAD-box ATP-dependent 100.0 1.8E-47 3.8E-52 367.5 28.1 365 117-495 123-554 (620)
38 PRK11057 ATP-dependent DNA hel 100.0 7.7E-46 1.7E-50 395.8 36.9 326 133-489 14-351 (607)
39 KOG0344 ATP-dependent RNA heli 100.0 2E-46 4.4E-51 369.1 28.4 374 112-495 123-509 (593)
40 TIGR01389 recQ ATP-dependent D 100.0 5.8E-45 1.3E-49 390.6 34.0 321 138-489 8-339 (591)
41 PRK02362 ski2-like helicase; P 100.0 6E-45 1.3E-49 398.9 32.0 338 122-482 2-398 (737)
42 PRK13767 ATP-dependent helicas 100.0 7.2E-44 1.6E-48 393.5 40.0 343 128-480 18-397 (876)
43 PRK00254 ski2-like helicase; P 100.0 9.4E-44 2E-48 388.5 33.5 339 122-482 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 2.6E-42 5.7E-47 376.5 39.7 321 128-481 436-770 (926)
45 PRK10689 transcription-repair 100.0 3.1E-41 6.7E-46 376.0 39.0 315 134-481 592-919 (1147)
46 PRK01172 ski2-like helicase; P 100.0 8.7E-42 1.9E-46 371.7 31.9 334 122-482 2-379 (674)
47 PRK10917 ATP-dependent DNA hel 100.0 6.7E-41 1.5E-45 361.5 38.4 320 130-480 248-588 (681)
48 TIGR00643 recG ATP-dependent D 100.0 1.1E-40 2.3E-45 357.8 39.0 317 133-480 226-565 (630)
49 COG1201 Lhr Lhr-like helicases 100.0 6.9E-41 1.5E-45 352.8 34.4 340 128-480 8-361 (814)
50 COG0514 RecQ Superfamily II DN 100.0 1.6E-41 3.4E-46 345.3 27.6 327 138-492 12-348 (590)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-40 5E-45 350.9 33.2 316 139-478 12-388 (844)
52 COG1111 MPH1 ERCC4-like helica 100.0 6.6E-40 1.4E-44 318.3 33.5 324 142-482 14-482 (542)
53 COG1202 Superfamily II helicas 100.0 1.3E-40 2.7E-45 325.1 22.8 343 122-481 195-553 (830)
54 PRK05580 primosome assembly pr 100.0 1.9E-39 4.1E-44 348.7 33.2 382 142-553 143-643 (679)
55 PRK09751 putative ATP-dependen 100.0 1E-38 2.2E-43 357.1 34.8 311 163-479 1-383 (1490)
56 PHA02558 uvsW UvsW helicase; P 100.0 3.3E-39 7.2E-44 337.9 28.2 310 141-480 112-451 (501)
57 TIGR00595 priA primosomal prot 100.0 1.8E-39 3.9E-44 336.7 23.1 364 162-555 1-476 (505)
58 COG1198 PriA Primosomal protei 100.0 7.4E-39 1.6E-43 335.4 25.8 392 142-555 197-698 (730)
59 KOG0329 ATP-dependent RNA heli 100.0 1.1E-39 2.3E-44 288.2 15.4 320 121-489 42-364 (387)
60 PRK09401 reverse gyrase; Revie 100.0 3.1E-37 6.6E-42 344.8 39.0 283 139-453 77-410 (1176)
61 PHA02653 RNA helicase NPH-II; 100.0 7.5E-38 1.6E-42 330.5 31.7 321 146-490 167-523 (675)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-36 2.2E-41 329.6 35.1 312 148-487 7-342 (819)
63 PRK14701 reverse gyrase; Provi 100.0 7.4E-37 1.6E-41 348.3 32.1 330 131-489 67-464 (1638)
64 COG1204 Superfamily II helicas 100.0 3E-37 6.5E-42 330.2 26.9 335 127-482 15-409 (766)
65 PRK11664 ATP-dependent RNA hel 100.0 2.1E-36 4.6E-41 328.0 32.6 308 149-484 11-342 (812)
66 PRK12898 secA preprotein trans 100.0 2.4E-35 5.2E-40 306.3 35.3 320 142-485 102-590 (656)
67 TIGR01054 rgy reverse gyrase. 100.0 5.1E-35 1.1E-39 327.5 37.7 289 133-452 68-408 (1171)
68 PRK13766 Hef nuclease; Provisi 100.0 6.8E-35 1.5E-39 323.8 36.5 325 142-482 14-480 (773)
69 KOG0354 DEAD-box like helicase 100.0 8.3E-36 1.8E-40 306.8 26.6 339 128-483 47-531 (746)
70 PRK09200 preprotein translocas 100.0 1.4E-34 3.1E-39 307.0 35.9 321 139-485 75-545 (790)
71 TIGR01587 cas3_core CRISPR-ass 100.0 7.5E-36 1.6E-40 302.7 24.9 300 160-482 1-337 (358)
72 KOG0352 ATP-dependent DNA heli 100.0 2.8E-36 6E-41 284.9 19.7 332 140-489 16-370 (641)
73 COG1205 Distinct helicase fami 100.0 2.8E-35 6.1E-40 319.6 30.6 338 128-480 55-421 (851)
74 TIGR00963 secA preprotein tran 100.0 3.5E-34 7.6E-39 299.0 35.3 320 142-485 55-521 (745)
75 TIGR03714 secA2 accessory Sec 100.0 5.2E-34 1.1E-38 299.7 36.3 319 143-485 70-541 (762)
76 TIGR00603 rad25 DNA repair hel 100.0 5.8E-35 1.2E-39 307.0 27.2 306 142-482 254-608 (732)
77 COG1200 RecG RecG-like helicas 100.0 7.4E-34 1.6E-38 288.1 33.2 324 128-482 247-592 (677)
78 COG1061 SSL2 DNA or RNA helica 100.0 4.3E-35 9.3E-40 300.7 24.4 301 142-468 35-376 (442)
79 KOG0351 ATP-dependent DNA heli 100.0 1E-34 2.2E-39 312.6 26.4 329 136-490 257-601 (941)
80 KOG0349 Putative DEAD-box RNA 100.0 2.5E-35 5.5E-40 278.7 18.0 295 196-490 288-624 (725)
81 TIGR03158 cas3_cyano CRISPR-as 100.0 1.4E-33 3E-38 282.7 31.6 297 147-466 1-357 (357)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 1.6E-33 3.5E-38 292.8 27.8 338 136-488 103-498 (1230)
83 KOG0353 ATP-dependent DNA heli 100.0 2.7E-33 5.9E-38 261.0 23.2 341 124-487 74-473 (695)
84 PRK04914 ATP-dependent helicas 100.0 4.8E-31 1E-35 287.1 33.0 333 142-495 151-617 (956)
85 KOG0947 Cytoplasmic exosomal R 100.0 6.8E-32 1.5E-36 277.6 23.6 311 142-481 296-723 (1248)
86 PRK11448 hsdR type I restricti 100.0 3.4E-31 7.3E-36 294.7 29.1 320 142-479 412-813 (1123)
87 COG1197 Mfd Transcription-repa 100.0 2.6E-30 5.6E-35 276.6 34.6 322 128-481 579-913 (1139)
88 PRK11131 ATP-dependent RNA hel 100.0 9.4E-31 2E-35 288.4 31.6 306 146-485 77-415 (1294)
89 KOG0948 Nuclear exosomal RNA h 100.0 2.3E-30 4.9E-35 260.2 20.2 326 142-488 128-547 (1041)
90 PRK13104 secA preprotein trans 100.0 1.6E-28 3.4E-33 260.2 35.1 318 143-485 82-591 (896)
91 KOG0951 RNA helicase BRR2, DEA 100.0 1.3E-29 2.7E-34 267.1 26.1 339 138-488 304-709 (1674)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.7E-29 8E-34 276.9 30.0 307 149-485 73-408 (1283)
93 cd00268 DEADc DEAD-box helicas 100.0 5.1E-29 1.1E-33 231.9 25.8 202 123-328 1-202 (203)
94 COG4581 Superfamily II RNA hel 100.0 1.3E-29 2.9E-34 271.2 24.0 321 142-479 118-535 (1041)
95 PRK12904 preprotein translocas 100.0 8.2E-28 1.8E-32 254.7 34.9 319 142-485 80-577 (830)
96 COG4098 comFA Superfamily II D 100.0 1.6E-27 3.4E-32 220.4 31.1 307 143-485 97-420 (441)
97 PRK12906 secA preprotein trans 100.0 8.2E-28 1.8E-32 253.6 30.8 319 142-485 79-557 (796)
98 PRK09694 helicase Cas3; Provis 100.0 1.5E-27 3.3E-32 258.2 30.3 313 141-470 284-664 (878)
99 PRK12899 secA preprotein trans 100.0 1.5E-26 3.3E-31 244.6 35.4 148 124-282 65-228 (970)
100 PLN03142 Probable chromatin-re 100.0 2.6E-27 5.5E-32 258.8 29.8 315 143-478 169-594 (1033)
101 COG4096 HsdR Type I site-speci 100.0 7.2E-28 1.6E-32 247.7 22.1 315 142-481 164-545 (875)
102 PRK13107 preprotein translocas 100.0 4.2E-26 9.1E-31 241.0 31.7 318 143-485 82-595 (908)
103 KOG0950 DNA polymerase theta/e 99.9 4.6E-27 1E-31 244.0 19.0 332 136-489 216-619 (1008)
104 KOG0385 Chromatin remodeling c 99.9 1.4E-24 3.1E-29 219.7 26.7 320 143-483 167-599 (971)
105 PF00270 DEAD: DEAD/DEAH box h 99.9 4E-25 8.8E-30 199.4 20.1 164 145-315 1-167 (169)
106 TIGR00348 hsdR type I site-spe 99.9 1.1E-23 2.3E-28 227.0 30.2 304 143-468 238-634 (667)
107 COG1110 Reverse gyrase [DNA re 99.9 6.1E-23 1.3E-27 214.6 30.2 284 137-452 76-416 (1187)
108 COG1643 HrpA HrpA-like helicas 99.9 4.8E-23 1E-27 220.0 28.9 313 145-484 52-390 (845)
109 KOG0949 Predicted helicase, DE 99.9 1.6E-23 3.4E-28 216.7 20.1 160 143-312 511-673 (1330)
110 PRK14873 primosome assembly pr 99.9 1.9E-23 4.1E-28 221.5 20.5 335 162-537 164-602 (665)
111 PRK12900 secA preprotein trans 99.9 2.2E-22 4.9E-27 213.7 28.5 130 347-485 578-715 (1025)
112 KOG0384 Chromodomain-helicase 99.9 6.1E-23 1.3E-27 217.6 24.0 387 80-488 314-820 (1373)
113 KOG0922 DEAH-box RNA helicase 99.9 4.5E-22 9.7E-27 200.7 26.5 314 145-485 53-394 (674)
114 KOG0387 Transcription-coupled 99.9 6.1E-22 1.3E-26 201.7 26.3 328 143-491 205-671 (923)
115 TIGR00631 uvrb excinuclease AB 99.9 7.1E-22 1.5E-26 210.3 28.1 134 350-491 425-563 (655)
116 PRK12326 preprotein translocas 99.9 5.3E-21 1.2E-25 197.9 29.6 319 142-485 77-551 (764)
117 COG1203 CRISPR-associated heli 99.9 4.1E-22 8.8E-27 217.0 21.6 328 144-487 196-556 (733)
118 PRK13103 secA preprotein trans 99.9 3.4E-20 7.4E-25 196.6 30.0 319 142-485 81-595 (913)
119 KOG0390 DNA repair protein, SN 99.9 4.6E-20 9.9E-25 193.1 30.3 324 143-478 238-702 (776)
120 COG0556 UvrB Helicase subunit 99.9 1.5E-20 3.3E-25 184.1 22.4 131 346-484 425-560 (663)
121 KOG0920 ATP-dependent RNA heli 99.9 1.6E-20 3.4E-25 199.8 24.1 320 143-483 173-546 (924)
122 KOG1000 Chromatin remodeling p 99.9 4.2E-20 9E-25 178.9 24.4 320 142-479 197-599 (689)
123 TIGR01407 dinG_rel DnaQ family 99.9 1.8E-19 3.9E-24 200.5 32.1 336 128-481 231-814 (850)
124 KOG0923 mRNA splicing factor A 99.9 2.5E-20 5.4E-25 186.2 22.0 316 141-481 263-606 (902)
125 PRK05298 excinuclease ABC subu 99.9 6.2E-20 1.4E-24 197.1 26.9 125 351-483 430-559 (652)
126 KOG0392 SNF2 family DNA-depend 99.9 1.2E-20 2.5E-25 199.7 20.0 325 143-477 975-1448(1549)
127 smart00487 DEXDc DEAD-like hel 99.9 1.2E-19 2.6E-24 168.1 22.0 186 139-331 4-191 (201)
128 COG4889 Predicted helicase [Ge 99.8 3.7E-21 8.1E-26 196.9 11.8 355 131-498 149-618 (1518)
129 PRK12903 secA preprotein trans 99.8 1.5E-18 3.4E-23 182.2 31.6 318 142-485 77-543 (925)
130 KOG0926 DEAH-box RNA helicase 99.8 6.9E-19 1.5E-23 179.2 27.2 379 149-550 262-793 (1172)
131 KOG0924 mRNA splicing factor A 99.8 1.7E-19 3.6E-24 180.7 22.3 310 145-481 358-697 (1042)
132 KOG0389 SNF2 family DNA-depend 99.8 1.5E-19 3.2E-24 184.3 21.5 317 143-479 399-884 (941)
133 KOG0925 mRNA splicing factor A 99.8 1.9E-18 4E-23 167.2 24.0 332 118-481 22-387 (699)
134 CHL00122 secA preprotein trans 99.8 1.2E-17 2.7E-22 176.6 31.7 273 143-440 76-490 (870)
135 PRK12902 secA preprotein trans 99.8 7.4E-17 1.6E-21 170.3 31.6 128 142-282 84-218 (939)
136 KOG4150 Predicted ATP-dependen 99.8 1.3E-18 2.7E-23 171.1 16.7 337 137-488 280-649 (1034)
137 PRK07246 bifunctional ATP-depe 99.8 1.9E-16 4.2E-21 173.8 33.2 104 375-481 648-783 (820)
138 KOG1123 RNA polymerase II tran 99.8 5.9E-19 1.3E-23 171.1 11.5 294 142-469 301-635 (776)
139 cd00079 HELICc Helicase superf 99.7 1.4E-17 3.1E-22 143.1 13.0 120 351-477 12-131 (131)
140 PRK08074 bifunctional ATP-depe 99.7 8.9E-16 1.9E-20 171.7 29.9 107 375-481 753-893 (928)
141 PF04851 ResIII: Type III rest 99.7 1.3E-17 2.7E-22 152.6 12.5 154 143-312 3-184 (184)
142 cd00046 DEXDc DEAD-like helica 99.7 1.3E-16 2.9E-21 138.9 17.6 144 159-310 1-144 (144)
143 KOG0391 SNF2 family DNA-depend 99.7 2.5E-16 5.3E-21 165.9 21.9 110 374-483 1276-1387(1958)
144 KOG0388 SNF2 family DNA-depend 99.7 1.3E-16 2.9E-21 160.5 18.8 104 374-477 1044-1148(1185)
145 KOG0953 Mitochondrial RNA heli 99.7 8E-17 1.7E-21 158.6 16.3 271 161-488 194-483 (700)
146 TIGR03117 cas_csf4 CRISPR-asso 99.7 5.5E-15 1.2E-19 155.2 30.7 105 375-481 471-616 (636)
147 PF00271 Helicase_C: Helicase 99.7 8.4E-18 1.8E-22 130.0 7.3 78 392-469 1-78 (78)
148 KOG0386 Chromatin remodeling c 99.7 1.2E-16 2.6E-21 167.2 14.8 318 143-481 394-836 (1157)
149 KOG0951 RNA helicase BRR2, DEA 99.7 9.9E-16 2.1E-20 163.2 20.9 313 143-489 1143-1502(1674)
150 PRK12901 secA preprotein trans 99.7 1.1E-14 2.4E-19 155.6 27.5 131 346-485 607-745 (1112)
151 KOG1002 Nucleotide excision re 99.7 4.5E-15 9.7E-20 144.2 18.2 107 375-481 639-749 (791)
152 PRK11747 dinG ATP-dependent DN 99.6 4.8E-13 1E-17 145.3 29.6 102 376-481 536-674 (697)
153 KOG4439 RNA polymerase II tran 99.6 3.2E-14 6.9E-19 143.9 18.3 103 376-478 748-853 (901)
154 COG1199 DinG Rad3-related DNA 99.6 1.2E-13 2.5E-18 151.3 23.5 103 376-481 481-617 (654)
155 smart00490 HELICc helicase sup 99.6 2.9E-15 6.4E-20 117.0 7.7 81 389-469 2-82 (82)
156 TIGR00604 rad3 DNA repair heli 99.6 2.2E-12 4.7E-17 141.4 28.6 73 140-217 7-83 (705)
157 TIGR02562 cas3_yersinia CRISPR 99.5 1.7E-12 3.8E-17 139.8 22.1 330 142-484 407-897 (1110)
158 KOG1015 Transcription regulato 99.5 2.7E-12 5.8E-17 133.7 20.1 104 376-479 1144-1273(1567)
159 COG0553 HepA Superfamily II DN 99.5 5.4E-12 1.2E-16 143.8 22.7 322 142-481 337-820 (866)
160 PF06862 DUF1253: Protein of u 99.4 7.9E-11 1.7E-15 118.0 27.3 293 193-490 36-424 (442)
161 COG0610 Type I site-specific r 99.4 4.2E-11 9E-16 133.6 26.3 301 159-479 274-651 (962)
162 PF02399 Herpes_ori_bp: Origin 99.4 1.2E-11 2.7E-16 130.0 19.2 288 161-481 52-388 (824)
163 COG0653 SecA Preprotein transl 99.4 8.9E-11 1.9E-15 124.5 23.7 316 143-483 80-547 (822)
164 PF00176 SNF2_N: SNF2 family N 99.4 4.1E-12 8.9E-17 125.7 11.3 155 147-311 1-173 (299)
165 PF07652 Flavi_DEAD: Flaviviru 99.3 2.8E-12 6E-17 106.9 8.2 135 157-313 3-139 (148)
166 PRK15483 type III restriction- 99.3 2.5E-09 5.4E-14 116.2 28.5 73 424-496 501-583 (986)
167 KOG2340 Uncharacterized conser 99.2 2.6E-10 5.6E-15 112.6 15.5 344 140-489 213-676 (698)
168 smart00488 DEXDc2 DEAD-like he 99.1 1.8E-09 3.9E-14 105.0 13.7 73 143-217 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 1.8E-09 3.9E-14 105.0 13.7 73 143-217 8-84 (289)
170 KOG1016 Predicted DNA helicase 99.1 4.2E-08 9.1E-13 101.1 22.9 115 375-489 720-855 (1387)
171 COG3587 Restriction endonuclea 99.0 2.8E-08 6.1E-13 104.0 21.5 75 423-497 482-569 (985)
172 PF07517 SecA_DEAD: SecA DEAD- 99.0 9.3E-09 2E-13 97.2 16.3 128 142-282 76-210 (266)
173 TIGR00596 rad1 DNA repair prot 98.9 7.9E-08 1.7E-12 104.7 17.5 67 245-311 7-73 (814)
174 KOG0921 Dosage compensation co 98.8 7.1E-08 1.5E-12 101.1 12.8 318 147-481 382-774 (1282)
175 KOG0952 DNA/RNA helicase MER3/ 98.7 6.7E-09 1.4E-13 110.7 1.5 267 143-426 927-1207(1230)
176 PF13604 AAA_30: AAA domain; P 98.6 1.9E-07 4.2E-12 85.5 9.8 124 143-310 1-131 (196)
177 COG3421 Uncharacterized protei 98.5 7.7E-07 1.7E-11 89.9 12.3 142 163-311 2-166 (812)
178 PF13086 AAA_11: AAA domain; P 98.5 4.2E-07 9.1E-12 86.3 9.9 73 143-216 1-75 (236)
179 PF02562 PhoH: PhoH-like prote 98.5 5.3E-07 1.2E-11 81.8 9.8 142 142-309 3-155 (205)
180 PF13872 AAA_34: P-loop contai 98.5 2.2E-06 4.7E-11 81.4 13.4 169 126-314 26-224 (303)
181 KOG1001 Helicase-like transcri 98.4 7E-07 1.5E-11 95.3 8.8 102 375-476 540-643 (674)
182 KOG1803 DNA helicase [Replicat 98.3 1.9E-06 4.1E-11 87.7 9.1 65 142-214 184-249 (649)
183 PF13307 Helicase_C_2: Helicas 98.3 1.7E-06 3.7E-11 77.1 7.7 105 375-481 10-150 (167)
184 PRK10536 hypothetical protein; 98.3 2.1E-05 4.5E-10 73.5 14.5 149 138-308 54-211 (262)
185 PF09848 DUF2075: Uncharacteri 98.2 5.2E-06 1.1E-10 83.7 10.1 107 161-296 4-117 (352)
186 TIGR00376 DNA helicase, putati 98.2 1.9E-05 4.2E-10 85.2 13.5 67 142-216 156-223 (637)
187 KOG1802 RNA helicase nonsense 98.2 4.9E-05 1.1E-09 78.1 15.2 76 135-217 402-477 (935)
188 PRK10875 recD exonuclease V su 98.2 2.4E-05 5.1E-10 83.6 13.2 142 145-309 154-301 (615)
189 TIGR01447 recD exodeoxyribonuc 98.1 3.1E-05 6.8E-10 82.5 13.9 143 145-309 147-295 (586)
190 TIGR01448 recD_rel helicase, p 98.1 4.1E-05 8.9E-10 84.0 13.9 132 141-309 321-452 (720)
191 PF12340 DUF3638: Protein of u 98.1 6.2E-05 1.3E-09 69.0 12.7 128 123-260 5-145 (229)
192 PRK13889 conjugal transfer rel 97.9 0.00011 2.3E-09 82.2 12.7 124 142-309 345-470 (988)
193 COG1875 NYN ribonuclease and A 97.9 6.8E-05 1.5E-09 72.2 9.3 146 138-308 223-386 (436)
194 PF13245 AAA_19: Part of AAA d 97.9 5.6E-05 1.2E-09 57.2 7.0 60 151-214 2-62 (76)
195 KOG1805 DNA replication helica 97.9 8.3E-05 1.8E-09 79.8 10.4 135 127-282 657-809 (1100)
196 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00014 3E-09 80.2 12.7 123 142-308 351-475 (744)
197 PRK13826 Dtr system oriT relax 97.7 0.00052 1.1E-08 77.4 14.2 137 128-309 367-505 (1102)
198 smart00492 HELICc3 helicase su 97.7 0.00025 5.4E-09 60.9 8.6 77 404-480 27-137 (141)
199 smart00491 HELICc2 helicase su 97.6 0.0004 8.7E-09 59.7 8.9 94 387-480 4-138 (142)
200 PF13401 AAA_22: AAA domain; P 97.6 0.0018 3.9E-08 55.0 12.9 25 158-183 4-28 (131)
201 PRK08181 transposase; Validate 97.5 0.0013 2.9E-08 63.0 12.7 122 144-315 88-214 (269)
202 PF05970 PIF1: PIF1-like helic 97.5 0.00034 7.3E-09 70.8 8.7 68 143-218 1-76 (364)
203 cd00009 AAA The AAA+ (ATPases 97.5 0.0016 3.4E-08 56.3 11.5 24 158-182 19-42 (151)
204 PRK06526 transposase; Provisio 97.5 0.00082 1.8E-08 64.0 10.0 42 153-202 93-134 (254)
205 PRK04296 thymidine kinase; Pro 97.4 0.00021 4.5E-09 65.2 5.5 35 160-202 4-38 (190)
206 KOG1132 Helicase of the DEAD s 97.4 0.00082 1.8E-08 71.8 9.8 77 142-218 20-134 (945)
207 PF00580 UvrD-helicase: UvrD/R 97.4 0.00055 1.2E-08 68.0 8.3 123 144-279 1-125 (315)
208 TIGR02760 TraI_TIGR conjugativ 97.4 0.024 5.2E-07 69.1 22.8 135 143-309 429-566 (1960)
209 KOG0383 Predicted helicase [Ge 97.3 3.9E-05 8.4E-10 81.3 -0.9 63 374-437 631-696 (696)
210 KOG1513 Nuclear helicase MOP-3 97.3 0.019 4.2E-07 60.8 18.4 155 143-310 264-454 (1300)
211 PF00448 SRP54: SRP54-type pro 97.2 0.0031 6.7E-08 57.6 10.6 130 161-321 4-136 (196)
212 COG2805 PilT Tfp pilus assembl 97.2 0.0069 1.5E-07 57.3 12.3 77 89-186 55-152 (353)
213 PRK14974 cell division protein 97.2 0.0055 1.2E-07 60.7 12.4 54 268-321 221-275 (336)
214 PRK12723 flagellar biosynthesi 97.1 0.013 2.8E-07 59.3 14.8 159 159-363 175-338 (388)
215 smart00382 AAA ATPases associa 97.1 0.001 2.2E-08 57.1 5.7 43 158-208 2-44 (148)
216 PHA02533 17 large terminase pr 97.0 0.0059 1.3E-07 64.5 11.9 151 142-310 58-210 (534)
217 PRK06921 hypothetical protein; 97.0 0.01 2.2E-07 57.1 12.2 44 158-209 117-160 (266)
218 KOG0989 Replication factor C, 97.0 0.0015 3.2E-08 61.8 5.8 46 265-311 125-170 (346)
219 PRK14722 flhF flagellar biosyn 96.9 0.011 2.4E-07 59.2 12.0 130 158-321 137-269 (374)
220 PRK07952 DNA replication prote 96.9 0.015 3.2E-07 55.0 12.2 108 159-314 100-209 (244)
221 PRK08116 hypothetical protein; 96.9 0.02 4.2E-07 55.3 13.1 42 160-210 116-157 (268)
222 TIGR01075 uvrD DNA helicase II 96.9 0.0056 1.2E-07 68.0 10.5 109 142-280 3-114 (715)
223 PRK11773 uvrD DNA-dependent he 96.9 0.0055 1.2E-07 68.0 10.4 108 143-280 9-119 (721)
224 PRK08727 hypothetical protein; 96.8 0.007 1.5E-07 57.1 9.3 35 159-201 42-76 (233)
225 PTZ00112 origin recognition co 96.8 0.019 4.2E-07 62.5 13.3 24 161-185 784-807 (1164)
226 PRK05703 flhF flagellar biosyn 96.8 0.024 5.2E-07 58.4 13.5 128 158-321 221-354 (424)
227 PRK10919 ATP-dependent DNA hel 96.8 0.0047 1E-07 67.8 8.8 71 143-219 2-72 (672)
228 PRK12377 putative replication 96.7 0.022 4.7E-07 54.0 11.9 45 159-212 102-146 (248)
229 PRK11889 flhF flagellar biosyn 96.7 0.026 5.6E-07 56.5 12.5 127 159-321 242-374 (436)
230 KOG0298 DEAD box-containing he 96.7 0.0063 1.4E-07 67.8 9.0 153 157-315 373-555 (1394)
231 PRK05707 DNA polymerase III su 96.7 0.018 3.8E-07 57.2 11.4 43 143-186 3-49 (328)
232 PRK14712 conjugal transfer nic 96.7 0.012 2.7E-07 68.8 11.6 64 143-210 835-900 (1623)
233 KOG1131 RNA polymerase II tran 96.7 0.022 4.7E-07 57.7 11.7 75 140-218 13-91 (755)
234 cd01120 RecA-like_NTPases RecA 96.6 0.021 4.6E-07 50.2 10.9 40 161-208 2-41 (165)
235 PRK05642 DNA replication initi 96.6 0.013 2.7E-07 55.5 9.5 36 159-202 46-81 (234)
236 PF13871 Helicase_C_4: Helicas 96.6 0.0057 1.2E-07 58.2 7.0 79 415-493 52-142 (278)
237 COG1419 FlhF Flagellar GTP-bin 96.6 0.076 1.7E-06 53.0 15.0 131 158-322 203-336 (407)
238 PRK11054 helD DNA helicase IV; 96.6 0.016 3.5E-07 63.3 11.4 71 142-218 195-265 (684)
239 COG2256 MGS1 ATPase related to 96.6 0.013 2.9E-07 57.7 9.3 36 272-312 107-142 (436)
240 cd01124 KaiC KaiC is a circadi 96.5 0.023 5E-07 51.6 10.5 48 161-217 2-49 (187)
241 PRK06835 DNA replication prote 96.5 0.039 8.5E-07 54.7 12.5 45 157-210 182-226 (329)
242 PRK13709 conjugal transfer nic 96.5 0.027 5.8E-07 67.1 13.1 127 142-309 966-1099(1747)
243 PRK08769 DNA polymerase III su 96.5 0.053 1.2E-06 53.4 13.1 144 142-311 3-154 (319)
244 PF05621 TniB: Bacterial TniB 96.5 0.018 3.8E-07 55.4 9.3 54 160-218 63-120 (302)
245 TIGR02785 addA_Gpos recombinat 96.5 0.015 3.4E-07 68.2 10.9 123 144-280 2-126 (1232)
246 PF13177 DNA_pol3_delta2: DNA 96.5 0.044 9.6E-07 48.4 11.4 46 268-314 101-146 (162)
247 PRK08084 DNA replication initi 96.4 0.019 4E-07 54.4 9.4 37 158-202 45-81 (235)
248 PF14617 CMS1: U3-containing 9 96.4 0.0087 1.9E-07 56.2 6.9 86 193-280 125-212 (252)
249 PRK14087 dnaA chromosomal repl 96.4 0.027 5.8E-07 58.6 11.2 110 159-314 142-253 (450)
250 PRK12422 chromosomal replicati 96.4 0.017 3.7E-07 59.8 9.7 112 159-320 142-255 (445)
251 PRK06893 DNA replication initi 96.4 0.0086 1.9E-07 56.4 6.8 44 268-311 90-135 (229)
252 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.026 5.6E-07 53.1 10.1 19 157-175 37-55 (226)
253 PLN03025 replication factor C 96.3 0.043 9.3E-07 54.6 11.7 38 269-307 99-136 (319)
254 PF13173 AAA_14: AAA domain 96.3 0.055 1.2E-06 45.7 10.5 38 269-309 61-98 (128)
255 PRK12727 flagellar biosynthesi 96.2 0.11 2.3E-06 54.3 14.0 19 157-175 349-367 (559)
256 PRK00149 dnaA chromosomal repl 96.2 0.027 5.8E-07 59.0 10.0 44 159-209 149-192 (450)
257 PHA02544 44 clamp loader, smal 96.2 0.059 1.3E-06 53.6 12.0 40 269-308 100-139 (316)
258 PF03354 Terminase_1: Phage Te 96.2 0.022 4.7E-07 60.1 9.1 73 146-222 1-82 (477)
259 PF05876 Terminase_GpA: Phage 96.1 0.015 3.2E-07 62.2 7.7 156 143-313 16-182 (557)
260 PHA03333 putative ATPase subun 96.1 0.11 2.3E-06 55.5 13.4 136 157-310 186-332 (752)
261 PRK06964 DNA polymerase III su 96.1 0.065 1.4E-06 53.3 11.4 42 144-186 2-48 (342)
262 TIGR02760 TraI_TIGR conjugativ 96.0 0.038 8.2E-07 67.5 11.2 63 142-210 1018-1084(1960)
263 PRK00411 cdc6 cell division co 96.0 0.052 1.1E-06 55.8 11.0 26 159-185 56-81 (394)
264 PRK09183 transposase/IS protei 96.0 0.065 1.4E-06 51.4 10.8 39 155-201 99-137 (259)
265 PRK08903 DnaA regulatory inact 96.0 0.042 9.2E-07 51.7 9.5 18 158-175 42-59 (227)
266 TIGR01547 phage_term_2 phage t 96.0 0.035 7.6E-07 57.1 9.5 145 161-322 4-152 (396)
267 PRK12323 DNA polymerase III su 96.0 0.064 1.4E-06 57.2 11.3 43 268-311 123-165 (700)
268 PRK13342 recombination factor 96.0 0.073 1.6E-06 55.0 11.8 16 160-175 38-53 (413)
269 cd01122 GP4d_helicase GP4d_hel 96.0 0.053 1.1E-06 52.6 10.2 54 156-217 28-81 (271)
270 PF00004 AAA: ATPase family as 95.9 0.097 2.1E-06 44.1 10.7 15 161-175 1-15 (132)
271 PRK14958 DNA polymerase III su 95.9 0.13 2.7E-06 54.5 13.3 39 268-307 118-156 (509)
272 PRK07003 DNA polymerase III su 95.9 0.085 1.8E-06 57.2 11.9 40 268-308 118-157 (830)
273 TIGR02881 spore_V_K stage V sp 95.9 0.022 4.7E-07 54.9 6.9 17 159-175 43-59 (261)
274 TIGR00362 DnaA chromosomal rep 95.9 0.065 1.4E-06 55.3 10.8 37 160-202 138-174 (405)
275 PF05496 RuvB_N: Holliday junc 95.8 0.024 5.3E-07 51.9 6.6 16 160-175 52-67 (233)
276 PHA00729 NTP-binding motif con 95.8 0.077 1.7E-06 49.1 9.9 21 160-181 19-39 (226)
277 PRK04195 replication factor C 95.8 0.079 1.7E-06 56.0 11.4 18 158-175 39-56 (482)
278 TIGR01425 SRP54_euk signal rec 95.8 0.14 3.1E-06 52.3 12.6 130 161-321 103-235 (429)
279 PRK00771 signal recognition pa 95.8 0.15 3.2E-06 52.6 12.8 52 270-321 176-228 (437)
280 PRK08533 flagellar accessory p 95.8 0.095 2.1E-06 49.3 10.7 51 157-216 23-73 (230)
281 PRK12402 replication factor C 95.8 0.051 1.1E-06 54.5 9.5 40 268-308 124-163 (337)
282 PF00308 Bac_DnaA: Bacterial d 95.8 0.046 1E-06 51.0 8.4 107 160-314 36-144 (219)
283 KOG1133 Helicase of the DEAD s 95.8 0.64 1.4E-05 49.3 17.0 103 376-481 631-780 (821)
284 PRK14088 dnaA chromosomal repl 95.7 0.11 2.4E-06 54.0 11.7 38 159-202 131-168 (440)
285 TIGR01073 pcrA ATP-dependent D 95.7 0.05 1.1E-06 60.7 9.7 72 142-219 3-74 (726)
286 TIGR01074 rep ATP-dependent DN 95.6 0.052 1.1E-06 60.0 9.6 70 144-219 2-71 (664)
287 PRK13341 recombination factor 95.6 0.14 3E-06 56.4 12.5 40 269-313 109-148 (725)
288 PRK14086 dnaA chromosomal repl 95.6 0.04 8.7E-07 58.6 8.0 108 160-315 316-425 (617)
289 PRK06871 DNA polymerase III su 95.6 0.17 3.7E-06 49.9 12.0 42 144-186 3-51 (325)
290 PF03969 AFG1_ATPase: AFG1-lik 95.6 0.15 3.1E-06 51.4 11.6 109 159-314 63-172 (362)
291 PRK07994 DNA polymerase III su 95.6 0.16 3.4E-06 54.9 12.4 39 268-307 118-156 (647)
292 COG1435 Tdk Thymidine kinase [ 95.6 0.12 2.6E-06 46.1 9.5 103 161-297 7-109 (201)
293 TIGR03015 pepcterm_ATPase puta 95.5 0.14 3.1E-06 49.4 11.3 33 143-175 23-60 (269)
294 PRK12724 flagellar biosynthesi 95.5 0.19 4.1E-06 51.0 12.1 54 268-321 298-356 (432)
295 PF05127 Helicase_RecD: Helica 95.5 0.0075 1.6E-07 53.5 1.9 123 162-310 1-123 (177)
296 PRK08699 DNA polymerase III su 95.5 0.13 2.9E-06 50.9 11.0 40 145-185 3-47 (325)
297 COG0593 DnaA ATPase involved i 95.5 0.083 1.8E-06 53.3 9.4 49 269-317 175-225 (408)
298 PRK11331 5-methylcytosine-spec 95.5 0.084 1.8E-06 54.0 9.5 32 144-175 180-211 (459)
299 PF01695 IstB_IS21: IstB-like 95.4 0.025 5.4E-07 50.8 5.2 49 152-209 41-89 (178)
300 PRK06731 flhF flagellar biosyn 95.4 0.27 5.8E-06 47.3 12.4 156 158-362 75-236 (270)
301 KOG0739 AAA+-type ATPase [Post 95.4 0.29 6.2E-06 46.5 11.9 54 153-218 156-214 (439)
302 PRK14723 flhF flagellar biosyn 95.3 0.17 3.6E-06 55.4 11.8 66 252-321 250-317 (767)
303 COG1474 CDC6 Cdc6-related prot 95.3 0.16 3.4E-06 51.3 10.9 26 160-186 44-69 (366)
304 KOG0991 Replication factor C, 95.3 0.025 5.3E-07 51.5 4.4 44 265-309 109-152 (333)
305 PRK07993 DNA polymerase III su 95.3 0.22 4.8E-06 49.6 11.7 42 144-186 3-51 (334)
306 PRK07764 DNA polymerase III su 95.3 0.17 3.7E-06 56.5 11.9 39 268-307 119-157 (824)
307 PRK14956 DNA polymerase III su 95.3 0.13 2.8E-06 53.2 10.2 22 161-183 43-64 (484)
308 PRK09111 DNA polymerase III su 95.3 0.26 5.6E-06 53.1 12.9 40 267-307 130-169 (598)
309 PRK10917 ATP-dependent DNA hel 95.2 0.12 2.6E-06 57.1 10.6 73 376-448 312-389 (681)
310 CHL00181 cbbX CbbX; Provisiona 95.2 0.066 1.4E-06 52.2 7.6 18 158-175 59-76 (287)
311 PRK12726 flagellar biosynthesi 95.2 0.2 4.4E-06 50.0 10.9 36 158-201 206-241 (407)
312 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.75 1.6E-05 40.2 13.1 53 267-319 93-147 (159)
313 TIGR00064 ftsY signal recognit 95.1 0.43 9.3E-06 46.1 12.8 54 268-321 153-213 (272)
314 cd01121 Sms Sms (bacterial rad 95.1 0.14 3.1E-06 51.7 9.9 51 158-217 82-132 (372)
315 PRK09112 DNA polymerase III su 95.1 0.11 2.3E-06 52.2 8.9 42 268-310 140-181 (351)
316 KOG2028 ATPase related to the 95.1 0.1 2.2E-06 50.8 8.2 16 160-175 164-179 (554)
317 PHA03368 DNA packaging termina 95.0 0.17 3.6E-06 53.8 10.4 133 159-311 255-391 (738)
318 PRK11823 DNA repair protein Ra 95.0 0.14 3E-06 53.3 9.9 51 158-217 80-130 (446)
319 PRK06090 DNA polymerase III su 95.0 0.37 8E-06 47.5 12.3 43 143-186 3-52 (319)
320 PRK14964 DNA polymerase III su 95.0 0.29 6.2E-06 51.2 12.0 39 268-307 115-153 (491)
321 COG0470 HolB ATPase involved i 95.0 0.15 3.3E-06 50.8 9.9 40 268-308 108-147 (325)
322 PRK14961 DNA polymerase III su 95.0 0.2 4.3E-06 50.8 10.7 39 268-307 118-156 (363)
323 PRK11034 clpA ATP-dependent Cl 95.0 0.2 4.3E-06 55.4 11.4 18 158-175 207-224 (758)
324 PRK13833 conjugal transfer pro 95.0 0.1 2.3E-06 51.3 8.2 65 134-206 121-186 (323)
325 COG3972 Superfamily I DNA and 95.0 0.062 1.3E-06 54.3 6.6 143 132-282 152-308 (660)
326 TIGR02928 orc1/cdc6 family rep 94.9 0.16 3.5E-06 51.6 10.0 25 159-184 41-65 (365)
327 PRK05580 primosome assembly pr 94.9 0.21 4.5E-06 55.1 11.3 96 348-451 171-267 (679)
328 PRK14960 DNA polymerase III su 94.9 0.32 6.8E-06 52.2 12.0 39 268-307 117-155 (702)
329 PRK08939 primosomal protein Dn 94.9 0.51 1.1E-05 46.4 12.9 43 158-209 156-198 (306)
330 PRK14949 DNA polymerase III su 94.9 0.18 3.9E-06 55.8 10.5 38 268-306 118-155 (944)
331 PRK07471 DNA polymerase III su 94.9 0.43 9.3E-06 48.2 12.6 136 161-311 44-182 (365)
332 PRK08691 DNA polymerase III su 94.9 0.25 5.3E-06 53.4 11.3 39 268-307 118-156 (709)
333 PRK07940 DNA polymerase III su 94.8 0.24 5.3E-06 50.4 10.8 42 268-310 116-157 (394)
334 PRK10867 signal recognition pa 94.8 0.48 1E-05 48.8 12.8 34 161-201 103-136 (433)
335 PRK14952 DNA polymerase III su 94.8 0.23 5.1E-06 53.1 10.9 39 268-307 117-155 (584)
336 PRK05986 cob(I)alamin adenolsy 94.8 0.56 1.2E-05 42.2 11.6 53 267-319 113-167 (191)
337 PRK13894 conjugal transfer ATP 94.8 0.12 2.5E-06 51.1 8.1 66 133-206 124-190 (319)
338 PRK14951 DNA polymerase III su 94.7 0.37 8E-06 51.9 12.3 39 268-307 123-161 (618)
339 COG2804 PulE Type II secretory 94.7 0.13 2.7E-06 52.9 8.3 41 144-185 242-284 (500)
340 COG1484 DnaC DNA replication p 94.7 0.12 2.5E-06 49.4 7.7 49 157-214 104-152 (254)
341 PRK06645 DNA polymerase III su 94.7 0.34 7.4E-06 51.0 11.7 23 160-183 45-67 (507)
342 COG1444 Predicted P-loop ATPas 94.7 0.6 1.3E-05 50.8 13.6 147 136-310 207-356 (758)
343 TIGR02639 ClpA ATP-dependent C 94.7 0.55 1.2E-05 52.4 14.0 17 159-175 204-220 (731)
344 PRK14957 DNA polymerase III su 94.6 0.3 6.5E-06 51.8 11.1 39 268-307 118-156 (546)
345 PRK00440 rfc replication facto 94.6 0.41 9E-06 47.5 11.9 39 269-308 102-140 (319)
346 TIGR00595 priA primosomal prot 94.6 0.2 4.2E-06 53.1 9.7 94 349-450 7-101 (505)
347 PRK06995 flhF flagellar biosyn 94.6 0.46 9.9E-06 49.5 12.1 18 159-176 257-274 (484)
348 cd00984 DnaB_C DnaB helicase C 94.6 0.24 5.1E-06 47.1 9.5 40 157-203 12-51 (242)
349 COG4626 Phage terminase-like p 94.6 0.37 8E-06 50.1 11.2 150 142-309 60-224 (546)
350 PRK14963 DNA polymerase III su 94.5 0.24 5.3E-06 52.2 10.3 23 161-184 39-61 (504)
351 PRK14965 DNA polymerase III su 94.5 0.42 9.1E-06 51.5 12.2 39 268-307 118-156 (576)
352 COG2909 MalT ATP-dependent tra 94.5 0.14 3.1E-06 55.5 8.3 42 269-310 129-170 (894)
353 TIGR02525 plasmid_TraJ plasmid 94.5 0.11 2.5E-06 52.2 7.3 27 158-185 149-175 (372)
354 PRK09376 rho transcription ter 94.5 0.22 4.8E-06 49.9 9.1 100 81-184 71-194 (416)
355 PRK14962 DNA polymerase III su 94.4 0.32 6.9E-06 50.9 10.7 15 161-175 39-53 (472)
356 TIGR00959 ffh signal recogniti 94.4 0.75 1.6E-05 47.4 13.1 34 161-201 102-135 (428)
357 KOG0742 AAA+-type ATPase [Post 94.4 0.05 1.1E-06 53.7 4.3 47 122-175 353-401 (630)
358 KOG0741 AAA+-type ATPase [Post 94.4 0.2 4.4E-06 51.3 8.7 17 159-175 257-273 (744)
359 COG1200 RecG RecG-like helicas 94.4 0.24 5.1E-06 52.6 9.5 73 376-448 313-390 (677)
360 TIGR02880 cbbX_cfxQ probable R 94.4 0.1 2.3E-06 50.8 6.6 18 158-175 58-75 (284)
361 PF05729 NACHT: NACHT domain 94.3 0.5 1.1E-05 41.5 10.6 26 160-186 2-27 (166)
362 TIGR02524 dot_icm_DotB Dot/Icm 94.3 0.12 2.5E-06 52.1 7.1 27 157-184 133-159 (358)
363 COG4962 CpaF Flp pilus assembl 94.3 0.1 2.2E-06 50.8 6.3 58 140-206 154-212 (355)
364 TIGR00643 recG ATP-dependent D 94.3 0.24 5.3E-06 54.2 10.1 73 376-448 286-363 (630)
365 TIGR00708 cobA cob(I)alamin ad 94.3 0.78 1.7E-05 40.7 11.3 53 267-319 95-149 (173)
366 KOG0737 AAA+-type ATPase [Post 94.3 0.12 2.6E-06 50.6 6.6 56 120-175 88-144 (386)
367 PRK14969 DNA polymerase III su 94.2 0.47 1E-05 50.5 11.6 39 268-307 118-156 (527)
368 PTZ00293 thymidine kinase; Pro 94.2 0.19 4.2E-06 46.0 7.5 38 158-203 4-41 (211)
369 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.3 6.6E-06 45.9 9.2 51 157-216 19-69 (229)
370 PRK05563 DNA polymerase III su 94.1 0.51 1.1E-05 50.6 11.8 15 161-175 41-55 (559)
371 TIGR02782 TrbB_P P-type conjug 94.1 0.22 4.8E-06 48.8 8.3 66 133-206 108-174 (299)
372 COG0552 FtsY Signal recognitio 94.1 1.1 2.3E-05 43.7 12.6 129 161-321 142-280 (340)
373 PRK14948 DNA polymerase III su 94.1 0.55 1.2E-05 50.9 11.9 25 160-185 40-64 (620)
374 PRK14950 DNA polymerase III su 94.1 0.45 9.7E-06 51.5 11.3 23 161-184 41-63 (585)
375 PRK10416 signal recognition pa 94.0 1.3 2.7E-05 43.9 13.5 54 268-321 195-255 (318)
376 TIGR00580 mfd transcription-re 94.0 0.36 7.8E-06 54.8 10.7 73 376-448 502-579 (926)
377 TIGR00678 holB DNA polymerase 94.0 0.87 1.9E-05 41.3 11.6 25 160-185 16-40 (188)
378 PRK14873 primosome assembly pr 93.9 0.4 8.6E-06 52.3 10.6 94 350-451 171-266 (665)
379 PRK14959 DNA polymerase III su 93.9 0.24 5.2E-06 53.0 8.7 24 160-184 40-63 (624)
380 PRK06067 flagellar accessory p 93.8 0.61 1.3E-05 44.0 10.7 51 158-217 25-75 (234)
381 PRK06904 replicative DNA helic 93.8 0.78 1.7E-05 48.1 12.2 116 157-282 220-347 (472)
382 TIGR03689 pup_AAA proteasome A 93.8 0.38 8.2E-06 50.5 9.8 18 158-175 216-233 (512)
383 cd03115 SRP The signal recogni 93.8 2.1 4.6E-05 38.1 13.6 33 161-201 3-35 (173)
384 TIGR03346 chaperone_ClpB ATP-d 93.8 0.65 1.4E-05 52.7 12.4 17 159-175 195-211 (852)
385 PHA03372 DNA packaging termina 93.7 0.57 1.2E-05 49.3 10.7 124 160-310 204-337 (668)
386 COG3973 Superfamily I DNA and 93.7 0.22 4.9E-06 51.8 7.6 89 127-217 188-283 (747)
387 PF10593 Z1: Z1 domain; Inter 93.7 0.32 7E-06 45.8 8.3 87 398-490 110-202 (239)
388 PRK06620 hypothetical protein; 93.7 0.16 3.4E-06 47.2 6.2 17 159-175 45-61 (214)
389 PRK05973 replicative DNA helic 93.6 0.27 5.8E-06 46.2 7.6 58 151-217 57-114 (237)
390 PHA00350 putative assembly pro 93.6 0.76 1.6E-05 46.5 11.2 42 270-311 82-146 (399)
391 PRK14955 DNA polymerase III su 93.6 0.85 1.8E-05 46.9 11.9 24 161-185 41-64 (397)
392 COG1198 PriA Primosomal protei 93.6 0.36 7.9E-06 52.7 9.4 99 342-448 220-319 (730)
393 KOG0738 AAA+-type ATPase [Post 93.4 0.32 6.9E-06 48.0 7.8 17 159-175 246-262 (491)
394 PF03796 DnaB_C: DnaB-like hel 93.4 0.44 9.4E-06 45.8 8.9 141 158-309 19-179 (259)
395 TIGR03600 phage_DnaB phage rep 93.4 0.58 1.3E-05 48.5 10.4 114 157-282 193-318 (421)
396 CHL00095 clpC Clp protease ATP 93.3 0.75 1.6E-05 52.1 11.9 17 159-175 201-217 (821)
397 PRK14721 flhF flagellar biosyn 93.3 1 2.2E-05 46.2 11.7 19 158-176 191-209 (420)
398 PRK05896 DNA polymerase III su 93.2 0.51 1.1E-05 50.4 9.7 24 160-184 40-63 (605)
399 TIGR03499 FlhF flagellar biosy 93.2 0.47 1E-05 46.2 8.9 17 159-175 195-211 (282)
400 TIGR01420 pilT_fam pilus retra 93.2 0.24 5.3E-06 49.7 7.0 42 158-206 122-163 (343)
401 PRK10865 protein disaggregatio 93.1 0.95 2.1E-05 51.3 12.3 17 159-175 200-216 (857)
402 TIGR00602 rad24 checkpoint pro 93.1 1.2 2.6E-05 48.2 12.4 17 159-175 111-127 (637)
403 PF13555 AAA_29: P-loop contai 93.1 0.13 2.8E-06 36.8 3.5 26 158-185 23-48 (62)
404 PRK10436 hypothetical protein; 93.1 0.33 7.1E-06 50.5 7.9 39 144-183 202-242 (462)
405 TIGR03877 thermo_KaiC_1 KaiC d 93.0 0.21 4.5E-06 47.3 6.0 52 157-217 20-71 (237)
406 PRK07399 DNA polymerase III su 93.0 1.8 3.8E-05 42.8 12.7 41 268-310 123-163 (314)
407 COG5008 PilU Tfp pilus assembl 92.9 2.4 5.2E-05 39.8 12.2 21 161-182 130-150 (375)
408 PRK14954 DNA polymerase III su 92.9 1.9 4.1E-05 46.7 13.5 24 161-185 41-64 (620)
409 PRK07133 DNA polymerase III su 92.8 1.5 3.3E-05 47.9 12.7 39 268-307 117-155 (725)
410 PF01637 Arch_ATPase: Archaeal 92.7 0.25 5.3E-06 46.4 6.1 16 159-174 21-36 (234)
411 COG3886 Predicted HKD family n 92.7 0.0074 1.6E-07 52.8 -3.9 31 28-58 137-167 (198)
412 KOG0701 dsRNA-specific nucleas 92.7 0.063 1.4E-06 62.6 2.2 93 377-469 295-399 (1606)
413 PRK08451 DNA polymerase III su 92.6 1.5 3.2E-05 46.4 12.1 41 267-308 115-155 (535)
414 PRK03992 proteasome-activating 92.6 0.56 1.2E-05 48.0 8.9 17 159-175 166-182 (389)
415 COG2255 RuvB Holliday junction 92.6 0.36 7.8E-06 45.7 6.7 17 160-176 54-70 (332)
416 COG1197 Mfd Transcription-repa 92.6 0.52 1.1E-05 53.3 9.0 91 351-448 627-722 (1139)
417 PRK13764 ATPase; Provisional 92.6 0.29 6.3E-06 52.4 6.8 27 157-184 256-282 (602)
418 cd01130 VirB11-like_ATPase Typ 92.5 0.37 8.1E-06 43.6 6.7 33 143-175 9-42 (186)
419 KOG1133 Helicase of the DEAD s 92.5 0.18 3.8E-06 53.3 4.9 43 142-184 14-60 (821)
420 cd01129 PulE-GspE PulE/GspE Th 92.5 0.3 6.4E-06 47.0 6.2 38 145-183 65-104 (264)
421 PF03237 Terminase_6: Terminas 92.4 1.9 4.1E-05 43.7 12.7 147 162-325 1-154 (384)
422 TIGR01243 CDC48 AAA family ATP 92.4 0.92 2E-05 50.7 11.0 19 157-175 211-229 (733)
423 PRK08840 replicative DNA helic 92.3 1.6 3.5E-05 45.6 11.8 116 157-282 216-342 (464)
424 TIGR02397 dnaX_nterm DNA polym 92.3 1.6 3.4E-05 44.2 11.6 24 160-184 38-61 (355)
425 PRK08506 replicative DNA helic 92.2 1.4 3.1E-05 46.2 11.5 113 158-282 192-315 (472)
426 TIGR01243 CDC48 AAA family ATP 92.2 0.65 1.4E-05 51.9 9.5 17 159-175 488-504 (733)
427 KOG1970 Checkpoint RAD17-RFC c 92.2 0.29 6.2E-06 50.5 6.0 26 157-184 109-134 (634)
428 PRK08006 replicative DNA helic 92.2 2.6 5.6E-05 44.2 13.3 115 158-282 224-349 (471)
429 PF01443 Viral_helicase1: Vira 92.2 0.19 4.2E-06 47.4 4.6 15 161-175 1-15 (234)
430 TIGR03345 VI_ClpV1 type VI sec 92.2 1.8 3.9E-05 49.0 12.8 28 148-175 192-225 (852)
431 PRK10689 transcription-repair 92.1 0.94 2E-05 52.8 10.7 74 375-448 650-728 (1147)
432 COG1485 Predicted ATPase [Gene 92.1 1.1 2.4E-05 43.9 9.5 47 268-315 129-176 (367)
433 COG1219 ClpX ATP-dependent pro 92.0 0.092 2E-06 50.3 2.1 17 159-175 98-114 (408)
434 PRK07414 cob(I)yrinic acid a,c 92.0 4 8.6E-05 36.3 12.1 53 267-319 113-167 (178)
435 TIGR02533 type_II_gspE general 92.0 0.49 1.1E-05 49.8 7.6 39 144-183 226-266 (486)
436 PRK13851 type IV secretion sys 91.8 0.26 5.5E-06 49.2 5.1 42 156-206 160-201 (344)
437 PRK07004 replicative DNA helic 91.8 1.4 3E-05 46.2 10.7 114 157-282 212-337 (460)
438 TIGR02538 type_IV_pilB type IV 91.7 0.51 1.1E-05 50.8 7.7 38 145-183 301-340 (564)
439 PF10412 TrwB_AAD_bind: Type I 91.7 0.23 4.9E-06 50.8 4.7 44 157-208 14-57 (386)
440 TIGR00635 ruvB Holliday juncti 91.6 0.84 1.8E-05 45.1 8.6 17 159-175 31-47 (305)
441 PRK05748 replicative DNA helic 91.6 2.3 4.9E-05 44.6 12.2 115 158-282 203-327 (448)
442 TIGR02655 circ_KaiC circadian 91.6 1 2.3E-05 47.5 9.7 59 150-217 250-313 (484)
443 PF06733 DEAD_2: DEAD_2; Inte 91.5 0.11 2.4E-06 46.6 2.0 43 241-283 115-159 (174)
444 PRK08760 replicative DNA helic 91.5 1.7 3.7E-05 45.7 11.0 113 158-282 229-352 (476)
445 COG1110 Reverse gyrase [DNA re 91.5 0.4 8.7E-06 53.1 6.4 59 376-434 127-191 (1187)
446 PRK06305 DNA polymerase III su 91.5 1.7 3.7E-05 45.3 10.9 24 161-185 42-65 (451)
447 PF06745 KaiC: KaiC; InterPro 91.4 0.31 6.8E-06 45.7 5.0 53 157-217 18-70 (226)
448 PRK14953 DNA polymerase III su 91.4 1.4 3E-05 46.5 10.1 16 161-176 41-56 (486)
449 KOG0298 DEAD box-containing he 91.3 0.32 7E-06 54.9 5.5 99 375-478 1222-1321(1394)
450 TIGR00416 sms DNA repair prote 91.2 1 2.2E-05 47.0 8.9 51 158-217 94-144 (454)
451 PRK04841 transcriptional regul 91.2 1.3 2.9E-05 51.0 11.0 41 270-310 122-162 (903)
452 TIGR00665 DnaB replicative DNA 91.2 1.9 4.1E-05 45.0 11.1 52 158-217 195-246 (434)
453 PRK08058 DNA polymerase III su 91.1 4.6 0.0001 40.3 13.3 42 267-309 108-149 (329)
454 PRK13900 type IV secretion sys 91.1 0.69 1.5E-05 46.0 7.3 42 156-206 158-199 (332)
455 COG2874 FlaH Predicted ATPases 91.0 7 0.00015 35.7 12.6 45 267-311 121-168 (235)
456 KOG1806 DEAD box containing he 91.0 0.44 9.5E-06 52.5 6.0 74 138-217 733-806 (1320)
457 TIGR01241 FtsH_fam ATP-depende 90.9 0.99 2.1E-05 47.9 8.7 17 159-175 89-105 (495)
458 TIGR02640 gas_vesic_GvpN gas v 90.8 0.48 1E-05 45.6 5.8 26 150-175 13-38 (262)
459 cd01131 PilT Pilus retraction 90.8 0.37 8.1E-06 44.1 4.8 39 161-206 4-42 (198)
460 TIGR00767 rho transcription te 90.8 1.3 2.9E-05 44.7 8.9 19 157-175 167-185 (415)
461 PRK09087 hypothetical protein; 90.8 0.67 1.4E-05 43.4 6.5 41 272-314 90-131 (226)
462 PRK05595 replicative DNA helic 90.6 2.5 5.4E-05 44.2 11.3 121 151-282 190-324 (444)
463 COG4185 Uncharacterized protei 90.5 1.8 4E-05 37.3 8.1 19 161-179 5-23 (187)
464 PRK04328 hypothetical protein; 90.5 0.58 1.3E-05 44.6 5.9 52 157-217 22-73 (249)
465 TIGR00763 lon ATP-dependent pr 90.3 4.3 9.4E-05 45.7 13.5 18 158-175 347-364 (775)
466 KOG1807 Helicases [Replication 90.2 0.6 1.3E-05 50.0 6.1 73 142-216 377-449 (1025)
467 PF12846 AAA_10: AAA-like doma 90.2 0.49 1.1E-05 46.4 5.4 42 159-208 2-43 (304)
468 KOG0741 AAA+-type ATPase [Post 90.2 2.9 6.2E-05 43.3 10.5 68 126-203 494-573 (744)
469 COG1222 RPT1 ATP-dependent 26S 90.1 0.81 1.7E-05 44.9 6.4 17 159-175 186-202 (406)
470 PRK06647 DNA polymerase III su 89.9 3.3 7.1E-05 44.5 11.6 23 161-184 41-63 (563)
471 KOG0652 26S proteasome regulat 89.9 1.8 4E-05 40.4 8.2 17 159-175 206-222 (424)
472 PRK14970 DNA polymerase III su 89.9 4.1 8.9E-05 41.4 12.0 16 160-175 41-56 (367)
473 PHA00012 I assembly protein 89.9 5.1 0.00011 39.2 11.5 51 268-319 80-136 (361)
474 TIGR02858 spore_III_AA stage I 89.8 1.4 3E-05 42.5 7.9 24 151-174 101-127 (270)
475 TIGR03878 thermo_KaiC_2 KaiC d 89.8 0.8 1.7E-05 43.9 6.4 39 157-203 35-73 (259)
476 COG0541 Ffh Signal recognition 89.8 5.5 0.00012 40.4 12.1 130 161-321 103-235 (451)
477 PRK13700 conjugal transfer pro 89.7 0.37 8E-06 52.2 4.2 70 130-209 157-228 (732)
478 KOG0339 ATP-dependent RNA heli 89.7 7.5 0.00016 40.0 12.9 73 372-448 294-376 (731)
479 TIGR03345 VI_ClpV1 type VI sec 89.7 1.3 2.9E-05 50.0 8.8 15 161-175 599-613 (852)
480 cd01127 TrwB Bacterial conjuga 89.6 0.36 7.7E-06 49.8 4.0 44 157-208 41-84 (410)
481 PF02572 CobA_CobO_BtuR: ATP:c 89.5 5 0.00011 35.6 10.4 53 267-319 94-148 (172)
482 COG1132 MdlB ABC-type multidru 89.4 1.1 2.3E-05 48.7 7.6 28 155-184 352-379 (567)
483 PF13481 AAA_25: AAA domain; P 89.3 1.1 2.5E-05 40.6 6.8 61 157-219 31-94 (193)
484 PHA00149 DNA encapsidation pro 89.3 3.2 6.9E-05 39.5 9.4 133 161-310 20-160 (331)
485 cd01393 recA_like RecA is a b 89.2 2.8 6E-05 39.2 9.5 47 158-206 19-65 (226)
486 CHL00176 ftsH cell division pr 89.2 1.5 3.2E-05 47.8 8.4 17 159-175 217-233 (638)
487 KOG0740 AAA+-type ATPase [Post 89.2 2.3 4.9E-05 43.3 9.1 17 159-175 187-203 (428)
488 cd01126 TraG_VirD4 The TraG/Tr 89.1 0.26 5.7E-06 50.4 2.6 47 160-216 1-47 (384)
489 PF00437 T2SE: Type II/IV secr 89.1 0.65 1.4E-05 44.9 5.2 42 157-206 126-167 (270)
490 TIGR02012 tigrfam_recA protein 89.0 0.81 1.8E-05 45.1 5.7 45 157-209 54-98 (321)
491 KOG0344 ATP-dependent RNA heli 89.0 7.1 0.00015 40.9 12.5 98 167-280 366-467 (593)
492 PRK09165 replicative DNA helic 89.0 5.7 0.00012 42.1 12.5 119 159-282 218-354 (497)
493 KOG0732 AAA+-type ATPase conta 89.0 0.75 1.6E-05 51.7 6.0 55 120-175 261-316 (1080)
494 cd00983 recA RecA is a bacter 89.0 1.1 2.5E-05 44.1 6.8 44 158-209 55-98 (325)
495 COG0467 RAD55 RecA-superfamily 88.9 0.94 2E-05 43.5 6.1 51 157-216 22-72 (260)
496 PRK06321 replicative DNA helic 88.7 7.7 0.00017 40.7 13.0 119 151-282 215-349 (472)
497 PF02534 T4SS-DNA_transf: Type 88.7 0.43 9.4E-06 50.3 4.0 49 159-217 45-93 (469)
498 PRK14971 DNA polymerase III su 88.5 3 6.5E-05 45.3 10.2 40 267-307 119-158 (614)
499 TIGR03819 heli_sec_ATPase heli 88.4 1.2 2.7E-05 44.4 6.8 63 133-206 154-217 (340)
500 TIGR02868 CydC thiol reductant 88.4 0.91 2E-05 48.8 6.2 24 157-182 360-383 (529)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-66 Score=513.55 Aligned_cols=369 Identities=46% Similarity=0.777 Sum_probs=344.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHh-cCCCCCCCCCeEEEE
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~-~~~~~~~~~~~~Lil 200 (565)
.|..+++++++...++..||..|+|+|...||.++.|+|++.++.||||||++|++|++.++.+ +....++++|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7889999999999999999999999999999999999999999999999999999999999998 566667789999999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|||||+.|+.+.+..+.... .++..+++||.....+...+..+.+|+|+||++|.+++..+...+.++.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 999999999999999998876 5789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCHHHHHHHHHhC-CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcC--CCCCceEEEEEEeccchHHHHHH
Q 008443 281 MLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVS--SPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 357 (565)
|+++||.+++++|+..+ ++..|+|++|||++.++..++..|+.++..+.+.... ....++.++...++...|...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 5566899999999999999999999999999887543 55667888888888888888888
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccC
Q 008443 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..|.... ....+|+||||+++..|++|+..|...++++..+||+.++.+|+.+++.|++|+..||||||++++|
T Consensus 331 ~lL~~~~------~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRG 404 (519)
T KOG0331|consen 331 KLLEDIS------SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARG 404 (519)
T ss_pred HHHHHHh------ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccccc
Confidence 8887765 1334579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhhc
Q 008443 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 497 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~~ 497 (565)
+|||+|++||+||+|.+..+|+||+||+||+|+.|.+++|++..+......+.+.+.+..
T Consensus 405 LDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 405 LDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG 464 (519)
T ss_pred CCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999998886654
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-64 Score=471.83 Aligned_cols=365 Identities=41% Similarity=0.631 Sum_probs=343.5
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008443 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~L 198 (565)
...+|.++++.|+++++++..|+..|+++|++++|.++.|+++|..|.||||||.+|++|+++.++.++ ..+++|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999865 458899
Q ss_pred EEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHH-cCCCCCCCceEEEecc
Q 008443 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDE 277 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~-~~~~~~~~~~~iIiDE 277 (565)
|++|+|||+.|+.+.|..+.... ++.+..+.||.....+...+...++|+|+||++|++++. .+.+.+..++++|+||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999999999998776 799999999999999998999999999999999999998 5678999999999999
Q ss_pred hhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHH
Q 008443 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 357 (565)
||++++++|...+..|+..++...|.+++|||++..+..+...-+.+|..+...........+.+.+..++...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999888999999988887777788889999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccC
Q 008443 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
.++.+... ..+||||++...++.++-.|+..|+.+..+||.|++..|...++.|++|..+||+|||++++|
T Consensus 293 ~ll~e~~g---------~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRG 363 (476)
T KOG0330|consen 293 YLLNELAG---------NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRG 363 (476)
T ss_pred HHHHhhcC---------CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhccc
Confidence 88875432 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhhcc
Q 008443 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAES 498 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~~~ 498 (565)
+|+|.|++||+||.|.+..+|+||+||++|+|..|.++.+++..|...+.+|+..+.+...
T Consensus 364 LDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 364 LDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred CCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999988876653
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9e-62 Score=511.16 Aligned_cols=408 Identities=41% Similarity=0.661 Sum_probs=359.9
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC
Q 008443 79 FNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG 158 (565)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~ 158 (565)
.+.|.....+..++.++++.++...++.+. .+..+|.|+.+|.++++++.+++.|.+.||.+|+++|.++||.++.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G 167 (545)
T PTZ00110 91 KNFYKEHPEVSALSSKEVDEIRKEKEITII---AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSG 167 (545)
T ss_pred hhcccCChhhhcCCHHHHHHHHHhcCcEEe---cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC
Confidence 367777778888999999999988877653 23467899999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+++|+++|||||||++|++|++.++..++....+.++.+|||+||++|+.|+.+.++++.... .+.+..++|+.....+
T Consensus 168 ~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q 246 (545)
T PTZ00110 168 RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQ 246 (545)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHH
Confidence 999999999999999999999998887654444568899999999999999999999987654 5788889999988888
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 318 (565)
...+..+++|+|+||++|.+++......+.++++|||||||++++++|...+..|+..+++..|++++|||++.++..+.
T Consensus 247 ~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~ 326 (545)
T PTZ00110 247 IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLA 326 (545)
T ss_pred HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHH
Confidence 77888889999999999999999888889999999999999999999999999999999999999999999999999888
Q ss_pred HhhcC-CCeEEEecCcC-CCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH
Q 008443 319 QGYLT-DPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 319 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~ 396 (565)
..++. .+..+.+.... ....++.+.+..+....+...+...+..... ...++||||+++..|+.+++.|..
T Consensus 327 ~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-------~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 327 RDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-------DGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred HHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-------cCCeEEEEecChHHHHHHHHHHHH
Confidence 88775 46666655433 2334566666666666676666666544321 234699999999999999999999
Q ss_pred CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEE
Q 008443 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 397 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~ 476 (565)
.++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++||++|+|.+..+|+||+||+||.|+.|.+++
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~ 479 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT 479 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHHhhhc
Q 008443 477 FYTDRDMLLVAQIKKAIVDAE 497 (565)
Q Consensus 477 ~~~~~d~~~~~~l~~~~~~~~ 497 (565)
|+++.+...+..+.+.+.+..
T Consensus 480 ~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 480 FLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred EECcchHHHHHHHHHHHHHcc
Confidence 999999999999988877654
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.4e-62 Score=468.40 Aligned_cols=393 Identities=42% Similarity=0.711 Sum_probs=358.7
Q ss_pred CCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCC
Q 008443 90 RFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGS 169 (565)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGs 169 (565)
.+++.++..|+..+++.+. +..+|.|+.+|++.+++.++++.+...||..|+|+|..|+|..++.+|+|.++.|||
T Consensus 218 Em~~rdwri~redynis~k----g~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 218 EMTERDWRIFREDYNISIK----GGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hcCCccceeeecceeeeec----CCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 3444445555555555443 357899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhcCCCC----CCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCC
Q 008443 170 GKTAAFTIPMIQHCVAQTPVG----RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG 245 (565)
Q Consensus 170 GKT~~~~l~~~~~~~~~~~~~----~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 245 (565)
|||.+|++|++.++...++.. ...||.+++++||++|+.|+.++-.++.... ++.+..+.||...+++--.+..+
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhcc
Confidence 999999999999888766433 3468999999999999999999999998776 68999999999999987788899
Q ss_pred CeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCC-------------------------C
Q 008443 246 VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-------------------------K 300 (565)
Q Consensus 246 ~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~-------------------------~ 300 (565)
|+|+|+||++|.+.+.+..+-+.++.|||+||++++.++||.+.+..++.+++. -
T Consensus 373 ceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~y 452 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKY 452 (673)
T ss_pred ceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccce
Confidence 999999999999999999899999999999999999999999999999998863 1
Q ss_pred CeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 008443 301 HQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF 380 (565)
.|.++||||++..++.++..|+.+|..+.++....+.+.+.|....+..+.+...|++.+... ..+++|||
T Consensus 453 rqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~---------~~ppiIIF 523 (673)
T KOG0333|consen 453 RQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN---------FDPPIIIF 523 (673)
T ss_pred eEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC---------CCCCEEEE
Confidence 589999999999999999999999999999999999999999999999999988888888664 23479999
Q ss_pred EcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhh
Q 008443 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVH 460 (565)
Q Consensus 381 ~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q 460 (565)
+|+++.|+.+++.|.+.|+.|..+||+-++++|+.++..|++|..+||||||++++|||||+|.+||+||.+.+..+|+|
T Consensus 524 vN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtH 603 (673)
T KOG0333|consen 524 VNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTH 603 (673)
T ss_pred EechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCceeEEEEeccccHHHHHHHHHHHhhh
Q 008443 461 RIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 461 ~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
|+||+||+|+.|.++.|+++.|...++.|...+.+.
T Consensus 604 RIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es 639 (673)
T KOG0333|consen 604 RIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRES 639 (673)
T ss_pred HhccccccccCceeEEEeccchhHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887643
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.7e-60 Score=497.09 Aligned_cols=405 Identities=36% Similarity=0.611 Sum_probs=351.8
Q ss_pred CCCCCCccc-cCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC
Q 008443 80 NNWKPSDRV-LRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG 158 (565)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~ 158 (565)
+.|.....+ ..++.++++.++...++.+. +...|.|+.+|.++++++.+++.|...||..|+|+|.++|+.++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~----g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g 158 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVK----GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSG 158 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEec----CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Confidence 334444444 34788899999998887663 3467899999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCC--CCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~--~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+++++++|||||||++|++|++.+++.... .....++++|||+||++|+.|+.+.++.+.... ++....+.||....
T Consensus 159 ~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~ 237 (518)
T PLN00206 159 RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMP 237 (518)
T ss_pred CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchH
Confidence 999999999999999999999988765321 112357899999999999999999999887665 57788889998887
Q ss_pred HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHH
Q 008443 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (565)
Q Consensus 237 ~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 316 (565)
.+...+..+++|+|+||++|.+++......++++++|||||||++++.+|...+..++..++ ..|++++|||++..++.
T Consensus 238 ~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~ 316 (518)
T PLN00206 238 QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEK 316 (518)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHH
Confidence 77777778899999999999999998888899999999999999999999999999998885 57899999999999999
Q ss_pred HHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH
Q 008443 317 LAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~ 396 (565)
+...++.++..+...........+.+....+....+...+...+.... ...+++||||+++..|+.+++.|..
T Consensus 317 l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~-------~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 317 FASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQ-------HFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred HHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhc-------ccCCCEEEEcCCchhHHHHHHHHhh
Confidence 999888888888877666666667777777776666666666654322 1123699999999999999999975
Q ss_pred -CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEE
Q 008443 397 -EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 475 (565)
Q Consensus 397 -~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~ 475 (565)
.++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+||+||.|..|.++
T Consensus 390 ~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 390 VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAI 469 (518)
T ss_pred ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHhhhc
Q 008443 476 SFYTDRDMLLVAQIKKAIVDAE 497 (565)
Q Consensus 476 ~~~~~~d~~~~~~l~~~~~~~~ 497 (565)
+|++..+...+..+.+.+....
T Consensus 470 ~f~~~~~~~~~~~l~~~l~~~~ 491 (518)
T PLN00206 470 VFVNEEDRNLFPELVALLKSSG 491 (518)
T ss_pred EEEchhHHHHHHHHHHHHHHcC
Confidence 9999999988888888777543
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.9e-62 Score=454.78 Aligned_cols=423 Identities=40% Similarity=0.685 Sum_probs=387.1
Q ss_pred CCCccCCCCCCCCCCCCccCCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCC
Q 008443 61 SNTTCRRSYASHPVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHE 140 (565)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~ 140 (565)
+..+....-+...+.+|....|.+...+..++.++.+..+.++++-+. +..+|+|+.+|.++.++..+++.|+++|
T Consensus 114 ~LmsV~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~ve----Gd~ipPPIksF~eMKFP~~~L~~lk~KG 189 (610)
T KOG0341|consen 114 ALMSVAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVE----GDDIPPPIKSFKEMKFPKPLLRGLKKKG 189 (610)
T ss_pred cceeHHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEee----CCCCCCchhhhhhccCCHHHHHHHHhcC
Confidence 344455556777889998899999999999999999999999887764 4578999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcC---CCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~---~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
+..|||+|.+.+|.++.|++.+-+|-||||||++|.+|++...+++. ++.++.||..|||||+++|+.|..+.+..+
T Consensus 190 I~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~ 269 (610)
T KOG0341|consen 190 IVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQY 269 (610)
T ss_pred CCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888763 677888999999999999999999988887
Q ss_pred Hhc-----CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHH
Q 008443 218 SRS-----LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 292 (565)
Q Consensus 218 ~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 292 (565)
+.. .+.++..++.||....++....+.+.+|+|+||++|.+++.++...++-++|+.+||||++.+.||...++.
T Consensus 270 ~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~ 349 (610)
T KOG0341|consen 270 VAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRT 349 (610)
T ss_pred HHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHH
Confidence 743 356788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCC
Q 008443 293 VMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 293 i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 372 (565)
|+.+|+...|.++||||+|..++.+++.-+..|+.+.++......-++.+..+++..+.|..++++.+.+.
T Consensus 350 iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--------- 420 (610)
T KOG0341|consen 350 IFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--------- 420 (610)
T ss_pred HHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC---------
Confidence 99999999999999999999999999999999999999988888888888888888888888888777543
Q ss_pred CCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC
Q 008443 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 373 ~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
.+|+||||..+..++.+.++|--.|+.++.+||+-++++|...++.|+.|+-+|||+||++++|+|+|++.+||+||.|
T Consensus 421 -~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 421 -SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred -CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHHhhhc
Q 008443 453 KTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVDAE 497 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-d~~~~~~l~~~~~~~~ 497 (565)
.....|+||+||+||.|+.|.+.+|++.. +...+-.++..+.+..
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~Eak 545 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAK 545 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999875 5566667776666544
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-59 Score=487.91 Aligned_cols=364 Identities=45% Similarity=0.723 Sum_probs=331.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
..|.++++++.+++++.+.||..|+|+|..++|.++.|+|+++.|+||||||++|++|+++.+..... . ....+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~-~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--R-KYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--c-CCCceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999664210 0 11119999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||+||+.|+.+.+..+......+.+..++||.....+...+..+++|||+||++|++++..+.+.+..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 99999999999999999887535789999999999988888888899999999999999999999999999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCC--CCCceEEEEEEeccch-HHHHHH
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSS--PTANVIQILEKVSENE-KVDRLL 357 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~ 357 (565)
|+++||...+..|+..++.+.|++++|||++..+..+...++.+|..+.+..... ....+.+.+..+.... |...+.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888874444 6778888888888765 777766
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccC
Q 008443 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..+..... .++||||+++..++.++..|...|+.+..+||++++.+|.++++.|++|+++||||||++++|
T Consensus 266 ~ll~~~~~---------~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 266 KLLKDEDE---------GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHhcCCC---------CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 66654321 259999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHHhhh
Q 008443 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVDA 496 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-d~~~~~~l~~~~~~~ 496 (565)
||||+|++||+||.|.+...|+||+||+||+|..|.+++|+.+. |...+..+++.+...
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999986 899999998887554
No 8
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-60 Score=426.89 Aligned_cols=365 Identities=35% Similarity=0.578 Sum_probs=336.4
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008443 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~ 196 (565)
..++.+|+++++..++++.+...||.+|..+|+.|++.+++|++++..+..|+|||.+|.+.+++.+.-.. +..+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----ceee
Confidence 45678999999999999999999999999999999999999999999999999999999888776544321 3467
Q ss_pred EEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
+|++.||+||+.|+.+.+..+.... ++.+..+.||.+..+..+.+..+.+++.+||+++++++.+..+.-+.++++|+|
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 9999999999999999999988765 688888999999988888888999999999999999999999999999999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch-HHHH
Q 008443 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDR 355 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 355 (565)
|+|.+++.+|..++..|++++++++|++++|||++.++.+....|+.+|+.+.+...+.....+.+.+..+..++ |.+.
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhH
Confidence 999999999999999999999999999999999999999999999999999999988888888999988887666 7777
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccc
Q 008443 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
|.++....... .++||||++..++.|.+.+.+.++.+..+||+|++++|+.+++.|++|+.+||++||+.+
T Consensus 257 LcdLYd~LtIt---------QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa 327 (400)
T KOG0328|consen 257 LCDLYDTLTIT---------QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA 327 (400)
T ss_pred HHHHhhhhehh---------eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh
Confidence 77665443222 499999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhh
Q 008443 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
+|+|+|.|++||+||.|.+...|+||+||.||.|++|.++.|+...|...++.+++++.-.
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~ 388 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQ 388 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999887543
No 9
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-60 Score=444.49 Aligned_cols=411 Identities=41% Similarity=0.651 Sum_probs=361.2
Q ss_pred ccCCCCCCccccCCCHHHHHHHHHHcC-ceEEec--CCCCCCCCCCCCcccC-CCCHHHHHHHHHCCCCCCCHHHHHHHH
Q 008443 78 VFNNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVA--SGSVPAPAPIESFTDM-CLHPSIMKDIEFHEYTRPTSIQAQAMP 153 (565)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~p~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~Q~~al~ 153 (565)
..+.|+.+.+...++.++++.++.... +.+... ....++|+|.-+|++. .-.+++++.+.+.||.+|+|+|.+|||
T Consensus 173 ~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWP 252 (629)
T KOG0336|consen 173 KKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWP 252 (629)
T ss_pred hhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccc
Confidence 347889999999999999999987654 333322 2335789999999885 677999999999999999999999999
Q ss_pred HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCC-CCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECC
Q 008443 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGG 232 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~-~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~ 232 (565)
.+++|.|++.+|.||+|||++|++|.+.++..++.. ....++.+|+++||++|+.|+.-+..++.- ++....+++||
T Consensus 253 I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygg 330 (629)
T KOG0336|consen 253 ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGG 330 (629)
T ss_pred eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecC
Confidence 999999999999999999999999999888877632 345788999999999999999988877753 47888899999
Q ss_pred CcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccH
Q 008443 233 TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 233 ~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
.+..++...+.++.+|+++||++|.++...+.+.+..+.|+|+||||+|++++|.+++++|+-.++|+.|+++.|||+|.
T Consensus 331 gnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~ 410 (629)
T KOG0336|consen 331 GNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPE 410 (629)
T ss_pred CCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEecCcCCC-CCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHH
Q 008443 313 EIEALAQGYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS 391 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~ 391 (565)
.+..++..|+.+|..+.++..... ...+.+.+....+.++. .++..+.+.. ....++||||.++..|+.|.
T Consensus 411 ~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~m-------s~ndKvIiFv~~K~~AD~LS 482 (629)
T KOG0336|consen 411 GVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVANM-------SSNDKVIIFVSRKVMADHLS 482 (629)
T ss_pred HHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHhc-------CCCceEEEEEechhhhhhcc
Confidence 999999999999999988876543 34556666333344444 4444433332 23346999999999999999
Q ss_pred HHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCc
Q 008443 392 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM 471 (565)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~ 471 (565)
..|.-.|+....+||+..+.+|+..++.|++|+++|||+||++++|+|+|++++|++||+|.+...|+||+||+||+|+.
T Consensus 483 Sd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~ 562 (629)
T KOG0336|consen 483 SDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRT 562 (629)
T ss_pred chhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccccHHHHHHHHHHHhhhcc
Q 008443 472 GQATSFYTDRDMLLVAQIKKAIVDAES 498 (565)
Q Consensus 472 g~~~~~~~~~d~~~~~~l~~~~~~~~~ 498 (565)
|..+.|+...|...+.+|.+.+.+.+.
T Consensus 563 G~sis~lt~~D~~~a~eLI~ILe~aeQ 589 (629)
T KOG0336|consen 563 GTSISFLTRNDWSMAEELIQILERAEQ 589 (629)
T ss_pred cceEEEEehhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999888877653
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.5e-59 Score=480.11 Aligned_cols=368 Identities=37% Similarity=0.579 Sum_probs=322.1
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC--CCCCCe
Q 008443 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPL 196 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~--~~~~~~ 196 (565)
...+|++++|++.++++|...||..|+++|++|++.++.|+|++++||||||||++|++|+++.++...... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346899999999999999999999999999999999999999999999999999999999999887654211 224688
Q ss_pred EEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
+|||+|+++|+.|+.+.+..+.... ++.+..++||.....+...+..+++|+|+||++|.+++....+.+.++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 9999999999999999999988765 688899999998888777788889999999999999998888899999999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCC--CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHH
Q 008443 277 EADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (565)
|||++.+.+|...+..++..++. ..+.+++|||++..+..+...++.++..+.+.........+.+.+.......+..
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 99999999999999999998874 4567999999999998888888888887776655544455555555555555655
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+... ...++||||+++..|+.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 245 ~l~~ll~~~---------~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~ 315 (423)
T PRK04837 245 LLQTLIEEE---------WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVA 315 (423)
T ss_pred HHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechh
Confidence 555544321 12369999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhh
Q 008443 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
++|||+|+|++||+||+|.+...|+||+||+||.|+.|.+++|+.+.|...+..+++.+...
T Consensus 316 ~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 316 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred hcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999988888887665443
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-58 Score=478.24 Aligned_cols=365 Identities=42% Similarity=0.702 Sum_probs=320.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC-CCCCCeEEEE
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVL 200 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~-~~~~~~~Lil 200 (565)
+|++++|++.+++.|.+.||..|+++|.++++.++.++|+|+++|||+|||++|++|+++.+....... ...+.++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999876543211 1234589999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||++|+.|+.+.++.+.... .+....++|+.....+...+.+.++|+|+||++|.+++....+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999988764 5788889999988887777788899999999999999988888899999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 360 (565)
+++.+|...+..++..++...|++++|||++.++..+...++.++..+.+.........+.+.+..+....+...+...+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998899889888887777655555556666666665554443333322
Q ss_pred HHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCc
Q 008443 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
.. ....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+
T Consensus 241 ~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 241 GK---------GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred Hc---------CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 21 122369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhh
Q 008443 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
|+|++||+||+|.++.+|+||+||+||.|..|.+++++...|...++.+++.+...
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998876543
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.5e-58 Score=485.07 Aligned_cols=360 Identities=41% Similarity=0.667 Sum_probs=325.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.+|.+++|++.++++|.++||.+|+|+|+++++.++.++++|+.||||+|||++|++|+++.+... ..++++|||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LIL 80 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILVL 80 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999876543 136789999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||++|+.|+++.+..+.....++.+..++||.....+...+..+++|||+||++|++++....+.++++++|||||||+
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 99999999999999998876667889999999998888888888899999999999999998888999999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 360 (565)
+++++|...+..++..++...|+++||||++..+..+...++.++..+.+.........+.+.+..+....+...+...+
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888877665555566667666666666766666655
Q ss_pred HHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCc
Q 008443 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
... ...++||||+++..++.+++.|...++.+..+||++++.+|+.++++|++|+++|||||+++++|||+
T Consensus 241 ~~~---------~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi 311 (629)
T PRK11634 241 EAE---------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 311 (629)
T ss_pred Hhc---------CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc
Confidence 432 12359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
|+|++||+||.|.+...|+||+||+||.|+.|.+++|+.+.+...++.+++.+.
T Consensus 312 p~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 312 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999888888877654
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.8e-58 Score=476.46 Aligned_cols=360 Identities=42% Similarity=0.644 Sum_probs=323.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.+|.++++++.+++++.+.||..|+|+|++|++.++.|++++++||||+|||++|++|+++.+.... .+.++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999998875421 35679999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+||++|+.|+.+.++.+.....++.+..++||.....+...+..+++|+|+||++|.+++.++.+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 99999999999999998766556889999999998888888888999999999999999998888899999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 360 (565)
+.+.+|...+..++..+++..|++++|||++..+..+...++.++..+.+.... ....+.+.+..+....+...+...+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988887775543 3344667777777767766666665
Q ss_pred HHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCc
Q 008443 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
... ...++||||+++..++.+++.|...++.+..+||++++.+|+.+++.|++|+++|||||+++++|+|+
T Consensus 238 ~~~---------~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi 308 (460)
T PRK11776 238 LHH---------QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI 308 (460)
T ss_pred Hhc---------CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch
Confidence 432 22359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
|++++||++|.|.+...|+||+||+||.|+.|.+++++.+.|...+..+++.+..
T Consensus 309 ~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 309 KALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred hcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998888888776643
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-57 Score=479.71 Aligned_cols=366 Identities=40% Similarity=0.600 Sum_probs=319.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC--CCCCCeE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPLA 197 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~--~~~~~~~ 197 (565)
..+|.+++|++.+++.|.+.||..|+++|+++||.++.|+|+++.+|||||||++|++++++.++...... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34699999999999999999999999999999999999999999999999999999999999887643211 2235789
Q ss_pred EEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-CCCCCCceEEEec
Q 008443 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILD 276 (565)
Q Consensus 198 Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~iIiD 276 (565)
|||+|+++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||++|++++... .+.+..+++||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999988764 68899999999988887778888999999999999988765 4678889999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCC--CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHH
Q 008443 277 EADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (565)
|+|++.+.+|...+..++..++. ..|++++|||++..+..+...++..+..+.+.........+.+.+.......+..
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH
Confidence 99999999999999999998876 6799999999999988888888888776665544444455666666655556655
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+.. ....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 247 ~L~~ll~~---------~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ 317 (572)
T PRK04537 247 LLLGLLSR---------SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVA 317 (572)
T ss_pred HHHHHHhc---------ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhh
Confidence 55554432 123369999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
++|||+|+|++||+||.|.+...|+||+||+||.|..|.+++|+.+.+...+..+++.+..
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999988888888776543
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.2e-58 Score=439.44 Aligned_cols=364 Identities=35% Similarity=0.534 Sum_probs=327.4
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
...|+...|++..++++..+||..+|++|+..++.++.|+|+|+.|-||||||++|++|+++.+.......+ ++-.+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 356778899999999999999999999999999999999999999999999999999999999888654433 6788999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-CCCCCCceEEEecch
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~iIiDE~ 278 (565)
|+|||+|+.|++.+.++++..+..+.++.+.||.+.....+.+..+++|+|+||++|.+++.+. .+...+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988789999999999988877788889999999999999999875 456677899999999
Q ss_pred hhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCC-CeEEEecCcCC--CCCceEEEEEEeccchHHHH
Q 008443 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTD-PVQVKVGKVSS--PTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 355 (565)
|++++.||...+..|+..++...|.++||||.+..++.++..-+.. +..+....... ....+.|-+...+...+...
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999988876665 66666554332 33456676777777777777
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccc
Q 008443 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
+...+.+.... .++||||++......+++.|+...++|..+||+.++..|..+...|++.+.-||||||+.+
T Consensus 320 l~~~LKk~~~~--------~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA 391 (543)
T KOG0342|consen 320 LYTFLKKNIKR--------YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA 391 (543)
T ss_pred HHHHHHHhcCC--------ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh
Confidence 77777665432 2699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHH
Q 008443 436 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~ 492 (565)
+|+|+|+|++||++|+|.++.+||||+||+||.|+.|++++++.+.+..+++++++.
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999844
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-58 Score=443.04 Aligned_cols=362 Identities=38% Similarity=0.620 Sum_probs=328.7
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
..+|.+++|+..+++++...||..|||+|..+||..+-|+|++.+|.||||||.+|++|+++.++-++.. -...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999999976532 23568999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-CCCCCCceEEEecch
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~iIiDE~ 278 (565)
||||++|+.|+...++++.... .+.+++..||.+.+.+...++..+||||+||++|.+++.+. .+.++++.++|+|||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 9999999999999999999886 59999999999999999999999999999999999999875 689999999999999
Q ss_pred hhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEecc--chHHHHH
Q 008443 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSE--NEKVDRL 356 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 356 (565)
|+|++.+|...+..|+...+.+.|.+|||||+...+..++..-+..|+.+.+.........+.+.+..+.. +.....+
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999998877777777766665542 2223344
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccccc
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
+..+....... ++|||+.+++.|..|.=.|--.|+.+.-+||.+++.+|-+.+++|++++++||||||++++
T Consensus 417 l~~l~~rtf~~--------~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 417 LASLITRTFQD--------RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred HHHHHHHhccc--------ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 44444433321 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHH
Q 008443 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~ 492 (565)
|+||++|.+||+|+.|.+...|+||+||+.|+|+.|.+++|+...|...++.+.+.
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988665
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.5e-56 Score=464.76 Aligned_cols=363 Identities=38% Similarity=0.623 Sum_probs=317.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+|+++++++.+++.+...||.+|+++|.++++.+++|+++++++|||+|||++|++|+++.++..+. ....++++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 5889999999999999999999999999999999999999999999999999999999998875421 122357899999
Q ss_pred CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh
Q 008443 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+++|+.|+.+.+..+.... ++.+..++|+.....+...+..+++|+|+||++|++++....+.+.++++|||||||++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 99999999999999998765 68899999999988888778888999999999999999988888999999999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCeEEEEeccccH-HHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccc-hHHHHHHHH
Q 008443 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPV-EIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVDRLLAL 359 (565)
Q Consensus 282 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 359 (565)
++++|...+..+....+...|++++|||++. .+..+...++.++..+...........+.+.+...... .+...+...
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999998888899999999975 46777788888888777665555555566665555433 333333332
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCC
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+.. ....++||||+++.+|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||
T Consensus 240 ~~~---------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 240 LKQ---------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred Hhc---------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 221 12346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
+|++++||++|+|.+...|+||+||+||.|..|.+++++...|...+..+++.+..
T Consensus 311 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 311 IDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred CCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988876654
No 18
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-56 Score=428.81 Aligned_cols=408 Identities=40% Similarity=0.664 Sum_probs=378.7
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC
Q 008443 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR 159 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~ 159 (565)
+.|.....+..++..+.-.++..+++.+. +...|.|+.+|+.++++..|..++++..|.+||++|.+++|..+.|+
T Consensus 186 dfy~e~esI~gl~~~d~~~~r~~Lnlrv~----g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgr 261 (731)
T KOG0339|consen 186 DFYEEHESIEGLTKMDVIDLRLTLNLRVS----GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGR 261 (731)
T ss_pred ccccChhhhhccccccchhhHhhhcceec----cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccc
Confidence 77777888899999999999999998775 34568999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
+++-+|-||||||-+|+.|++.+++.++....++||..||+|||++|+.|++.+++++++.. +++++.++||....++.
T Consensus 262 dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~ 340 (731)
T KOG0339|consen 262 DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQS 340 (731)
T ss_pred cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999998876 79999999999999999
Q ss_pred HHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 240 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
..+..++.||||||++|.+++..+...+.++.|+||||+++|.+.||.++++.|..+++++.|.|+||||.+..++.+++
T Consensus 341 k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar 420 (731)
T KOG0339|consen 341 KELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR 420 (731)
T ss_pred HhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCeEEEecCcCCCCCceEEEEEEecc-chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC
Q 008443 320 GYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (565)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~ 398 (565)
.++.+|+.+..+........+.+.+..+.. ..|...++..|...... +++|+|+..+..++.++..|.-.+
T Consensus 421 d~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~--------gkvlifVTKk~~~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 421 DILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSE--------GKVLIFVTKKADAEEIAANLKLKG 492 (731)
T ss_pred HHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccC--------CcEEEEEeccCCHHHHHHHhcccc
Confidence 999999999888888888888887776654 55677777777665433 359999999999999999999999
Q ss_pred CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 399 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
+.+..+||++.+.+|.+++.+|+.+...|||+||+.++|+|||.+.+||+||...+...|.||+||+||.|..|.+++++
T Consensus 493 ~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 493 FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhhhccCC
Q 008443 479 TDRDMLLVAQIKKAIVDAESGN 500 (565)
Q Consensus 479 ~~~d~~~~~~l~~~~~~~~~~~ 500 (565)
+++|..+.-.|.+.+......-
T Consensus 573 TeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 573 TEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred chhhHHHhhHHHHHHhhccccC
Confidence 9999999999988877654333
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-55 Score=459.69 Aligned_cols=369 Identities=39% Similarity=0.627 Sum_probs=317.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC--CCCCC
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGP 195 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~--~~~~~ 195 (565)
.....|.++++++.+.+.|.+.||..|+++|.++++.+++|+|+++.++||||||++|++++++.+....... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3346788999999999999999999999999999999999999999999999999999999999887653211 11257
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEE
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iI 274 (565)
++|||+||++|+.|+.+.++.+.... ++.+..++||.....+...+. ..++|+|+||++|.+++..+...++++++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 89999999999999999999987664 578888889877666555553 5689999999999999888888899999999
Q ss_pred ecchhhhhhCCCHHHHHHHHHhCCC--CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchH
Q 008443 275 LDEADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 352 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (565)
|||+|++.+.+|...+..++..++. ..|++++|||++.+...+...++.++..+.+.........+.+.+..+...++
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH
Confidence 9999999999999999999988854 56899999999998888888888888877665554444455555555555566
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
...+...+.. ....++||||+++..++.+++.|...++.+..+||++++++|.++++.|++|+++|||||+
T Consensus 323 ~~~l~~ll~~---------~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 323 YKLLYNLVTQ---------NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred HHHHHHHHHh---------cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 5555444432 1223699999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhh
Q 008443 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
++++|||+|++++||++++|.+...|+||+||+||.|+.|.+++|+...|...+..+++.+...
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999888888887766433
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-57 Score=439.63 Aligned_cols=387 Identities=44% Similarity=0.700 Sum_probs=349.1
Q ss_pred CCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC
Q 008443 111 SGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG 190 (565)
Q Consensus 111 ~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~ 190 (565)
.++...|.++..|.+..+.+.+..+++..++..|+|+|+.++|.+..|++++++|+||+|||.+|++|++.+++......
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~ 143 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED 143 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCccc
Confidence 34556788888999889999999999999999999999999999999999999999999999999999999999875321
Q ss_pred -----CCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC
Q 008443 191 -----RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT 265 (565)
Q Consensus 191 -----~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~ 265 (565)
.+..|++||++||+||+.|++++.+++.... .+.....+|+.....+......+|+|+|+||++|.+++..+.+
T Consensus 144 ~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i 222 (482)
T KOG0335|consen 144 RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKI 222 (482)
T ss_pred CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhccee
Confidence 1135899999999999999999999987654 6889999999988888888889999999999999999999999
Q ss_pred CCCCceEEEecchhhhhh-CCCHHHHHHHHHhCCC----CCeEEEEeccccHHHHHHHHhhcCC-CeEEEecCcCCCCCc
Q 008443 266 SLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPD----KHQTLLFSATMPVEIEALAQGYLTD-PVQVKVGKVSSPTAN 339 (565)
Q Consensus 266 ~~~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~----~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 339 (565)
.+++++|+|+||||+|++ .+|.+.+++|+..... ..|.++||||.+.+++.++..++.+ ...+.+........+
T Consensus 223 ~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~n 302 (482)
T KOG0335|consen 223 SLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSEN 302 (482)
T ss_pred ehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccccc
Confidence 999999999999999999 9999999999988743 6789999999999999988888776 778888888888999
Q ss_pred eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHh
Q 008443 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
+.+.+.++...+|...+++.+...............+++|||.+++.|..++..|...++++..+||..++.+|.+.++.
T Consensus 303 i~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 303 ITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALND 382 (482)
T ss_pred ceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHH
Confidence 99999999999999999999876543211222223479999999999999999999999999999999999999999999
Q ss_pred hhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhhcc
Q 008443 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAES 498 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~~~ 498 (565)
|++|.+.+||||+++++|+|+|+|++||+||.|.+..+|+||+||+||.|..|.++.|++..+....+.|.+.+.+...
T Consensus 383 Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q 461 (482)
T KOG0335|consen 383 FRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQ 461 (482)
T ss_pred hhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888876543
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-56 Score=412.08 Aligned_cols=365 Identities=38% Similarity=0.558 Sum_probs=324.9
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008443 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~L 198 (565)
....|..+|+++++.+.++.+|+.+|||+|+.|+|.+++|+|+|-+|.||||||.+|++|+++.+.+.+ .|-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 346799999999999999999999999999999999999999999999999999999999999887754 588899
Q ss_pred EEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC----CCCCCCceEEE
Q 008443 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVI 274 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~----~~~~~~~~~iI 274 (565)
|++||++|+-|+.+.|..+.+.. ++++..++||+..-.+...+...+++||+||+++.+++..+ ...++++.++|
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 99999999999999999887665 79999999999988888888899999999999999888765 34578899999
Q ss_pred ecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCC--CeEEEecCcCCCCCceEEEEEEeccchH
Q 008443 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTD--PVQVKVGKVSSPTANVIQILEKVSENEK 352 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (565)
+|||+++.+..|...+..+...++...|.++||||+...+..+...-... ...............+.+.+..++...+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999999999999999988777665444443 2233333344445566677888888888
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
-.+++..+....... .+.++||+++..+|+.++..|...++.++.+|+-|++.+|-..+.+|+++.++||||||
T Consensus 239 daYLv~~Lr~~~~~~------~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKE------NGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred HHHHHHHHhhhhhcc------CceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 888888887765532 22499999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
++++|+|||.|++||++|.|.++.+|+||+||+.|+|+.|.++.+++..|...+..++..+.+
T Consensus 313 VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 313 VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999877654
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-56 Score=422.24 Aligned_cols=359 Identities=34% Similarity=0.529 Sum_probs=318.0
Q ss_pred CcccC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 122 SFTDM--CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 122 ~~~~~--~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
.|+++ +|++++++++...||...||+|..++|.++.++|+++-++||||||++|++|+++.+..+.....+..--+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 45555 4669999999999999999999999999999999999999999999999999999886654222222235899
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH-hCCCeEEEECchHHHHHHHcCC--CCCCCceEEEec
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILD 276 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~iIiD 276 (565)
|+|||||+.|+.+....+...+.++...+++||....+....+ ..+++|+||||++|++++.+.. +.+..+.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 9999999999999999998877789999999998887766554 4678899999999999998753 456699999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCC--CCCceEEEEEEeccchHHH
Q 008443 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSS--PTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 354 (565)
|||++++.||...+..|+..+|...+.=+||||...++..+....+.++..+.+..... .+..+...+..+....|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876654 4555777788889999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
.++..+.... ..++|||+++....++....|... ...+..+||.|.+..|..+++.|.+-.-.+|+|||
T Consensus 245 ~lv~~L~~~~---------~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 245 QLVHLLNNNK---------DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred HHHHHHhccc---------cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 9999987732 236999999999999999998875 67889999999999999999999998888999999
Q ss_pred ccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
++++|+|||+|++||++|+|.++..|+||+||++|.|+.|.+++|+.+.+..++.-+
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877766654
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=9.9e-55 Score=448.28 Aligned_cols=360 Identities=36% Similarity=0.589 Sum_probs=310.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
..+|+++++++.+++++.+.||..|+++|.++++.++.|+++++.+|||+|||++|+++++..+... .+++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999988876432 14678999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
|+|+++|+.|+.+.+..+.... ......+.|+....+....+..+++|+|+||++|.+.+......++++++|||||+|
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999999887654 567777888888777777777788999999999999998888889999999999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch-HHHHHHH
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLA 358 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 358 (565)
++.+.++...+..++..++++.|++++|||++.....+...++..+..+.+.........+.+.+....... +...+..
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH
Confidence 999999988899999999999999999999999988888888888777665544444444555444443322 2222222
Q ss_pred HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCC
Q 008443 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+.. ....++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+
T Consensus 261 ~~~~---------~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~Gi 331 (401)
T PTZ00424 261 LYET---------LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGI 331 (401)
T ss_pred HHHh---------cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCc
Confidence 2211 1223699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
|+|++++||++|+|.+...|+||+||+||.|+.|.|++++.+.+...+..+++.+.
T Consensus 332 Dip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 332 DVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred CcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999998888876654
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-57 Score=410.96 Aligned_cols=360 Identities=33% Similarity=0.578 Sum_probs=332.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
-..|+++.|.++++..+...||..|.|+|++++|..+.|+|+|..|..|+|||-+|.+|+++.+... .+.-++++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999986543 24567999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
+||++|||-|....++.+.+.. ++.+...+||++..+..-.+....+++|+||++++++..++-..++++.++|+||||
T Consensus 159 lVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 9999999999999999998876 689999999999988877788899999999999999999998999999999999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (565)
.+++.+|...+..++..+++..|++++|||.|..+..+..+++.+|+.+..-. +.....+.+.+.++.+..|+..+-.+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999987754 33456778889999999988777666
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCC
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+.+.... ..|||||+...+|.+|+.+.+.|+.|..+|+.|.++.|..++..|++|.++.|||||.+.+|||
T Consensus 317 fskLqIN---------QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGID 387 (459)
T KOG0326|consen 317 FSKLQIN---------QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGID 387 (459)
T ss_pred HHHhccc---------ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccc
Confidence 6554322 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
+++|++||+||+|++...|+||+||+||.|..|.++.+++.+|...+.+++..+..
T Consensus 388 iqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 388 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred cceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999887653
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-55 Score=426.73 Aligned_cols=372 Identities=36% Similarity=0.582 Sum_probs=325.1
Q ss_pred CCCCCCCcccCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcC-CCCCCC
Q 008443 116 APAPIESFTDMCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGD 193 (565)
Q Consensus 116 ~p~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~-~~~~~~ 193 (565)
.|-.-..|..+||++.+...|+ .+++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+.... ...+..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 3455678999999999999996 67999999999999999999999999999999999999999999998864 455778
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-CCCCCCceE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSF 272 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~ 272 (565)
|+-+|||||||||+.|+++.++++...+..+-.+.+.||+..+.....++.+++|+|+||++|.+++.+. .+.+..+++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 9999999999999999999999999887677788999999999888899999999999999999999875 577888999
Q ss_pred EEecchhhhhhCCCHHHHHHHHHhCC-------------CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCc------
Q 008443 273 VILDEADRMLDMGFEPQIREVMQNLP-------------DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKV------ 333 (565)
Q Consensus 273 iIiDE~H~~~~~~~~~~~~~i~~~~~-------------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~------ 333 (565)
||+||+|++++.||...+..|+..+. +..|-+++|||+...+..++..-+.+|+.+..+..
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 99999999999999999999988772 13567999999999999999988999888862210
Q ss_pred -------------------CCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHH
Q 008443 334 -------------------SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (565)
Q Consensus 334 -------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l 394 (565)
...+..+.+.+..++..-+...|...+.+........ ++|||+.+.+.+++-.+.|
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~q-----k~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQ-----KMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhc-----eeEEEEechhHHHHHHHHH
Confidence 1122344566677777778888888777765554433 6999999999998888877
Q ss_pred HHC----------------------CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC
Q 008443 395 VAE----------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 395 ~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
... +.++..+||+|++++|..+++.|...+-.||+|||++++|+|+|+|++||.||+|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC
Confidence 652 3468899999999999999999999988899999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHH
Q 008443 453 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~ 492 (565)
.+..+|+||+||+.|.|..|.+++|+.+.+..+++.+++.
T Consensus 526 ~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 526 FSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred CCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999998888654
No 26
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-55 Score=423.81 Aligned_cols=380 Identities=34% Similarity=0.555 Sum_probs=334.7
Q ss_pred CHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCch
Q 008443 92 NPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGK 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGK 171 (565)
.++.++.+...+..-. ...+..|.+++|+...++.|+..+|..++.+|+++|+..+.|+++|.+|.|||||
T Consensus 49 Eee~i~~l~~ky~ei~---------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGK 119 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID---------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGK 119 (758)
T ss_pred hHHHHHHHHHHHHHhh---------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCc
Confidence 3455666666553211 2335679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEE
Q 008443 172 TAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 251 (565)
Q Consensus 172 T~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~ 251 (565)
|++|++|+++.+.... .....|--+|||.|||+||.|+++.+.++...+ .+..+++.||.........+ ...+|+||
T Consensus 120 TLAFlvPvlE~L~r~k-Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi-~~mNILVC 196 (758)
T KOG0343|consen 120 TLAFLVPVLEALYRLK-WSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI-SQMNILVC 196 (758)
T ss_pred eeeehHHHHHHHHHcC-CCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh-hcCCeEEe
Confidence 9999999999887642 123356679999999999999999999998775 78999999999877665555 45999999
Q ss_pred CchHHHHHHHcC-CCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEe
Q 008443 252 TPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKV 330 (565)
Q Consensus 252 T~~~l~~~~~~~-~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
||++|++++... .+...++.++|+||||+++++||...+..|+..+++..|.++||||....+..+++.-+.+|..+.+
T Consensus 197 TPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 197 TPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred chHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 999999999875 5778889999999999999999999999999999999999999999999999999998999988877
Q ss_pred cC--cCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecC
Q 008443 331 GK--VSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHG 406 (565)
Q Consensus 331 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~ 406 (565)
.. ....+.++.+.+..+...+|...|...+..+. ..++|||+.+.+++.++++.|++. |++...+||
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl---------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G 347 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL---------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHG 347 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhcc---------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeecc
Confidence 63 24556788899999999999999988887643 236999999999999999999987 889999999
Q ss_pred CCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEecccc-HHH
Q 008443 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLL 485 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d-~~~ 485 (565)
.|.+..|.++..+|.....-||+|||++++|+|+|.|++||++|.|.++.+|+||+||+.|.+..|.+++++.+.+ ..+
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 666
Q ss_pred HHHHHHH
Q 008443 486 VAQIKKA 492 (565)
Q Consensus 486 ~~~l~~~ 492 (565)
+..|++.
T Consensus 428 l~~Lq~k 434 (758)
T KOG0343|consen 428 LKKLQKK 434 (758)
T ss_pred HHHHHHc
Confidence 6666544
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-54 Score=450.18 Aligned_cols=453 Identities=40% Similarity=0.641 Sum_probs=392.6
Q ss_pred CCCcc-CCCCCCccccCCCHHHHHHHHHHcC-ceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHH
Q 008443 75 PQPVF-NNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAM 152 (565)
Q Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al 152 (565)
.+|+- ++|.....+..++.++.+.|+.... +.+. +...|.|+.+|...|++..++..++++||.+|+++|.+||
T Consensus 321 ~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~----g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAi 396 (997)
T KOG0334|consen 321 YEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVK----GKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAI 396 (997)
T ss_pred chhhhhcccccchhHHHHHHHHHHHhhcCccceeec----cCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhc
Confidence 34433 6666667788888888898887654 4443 4567999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECC
Q 008443 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGG 232 (565)
Q Consensus 153 ~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~ 232 (565)
|++..|+++|.+|.||+|||+.|++|++.+...+++...+.||.+||++||++|+.|+.+.++.+.... ++.+.+++|+
T Consensus 397 P~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg 475 (997)
T KOG0334|consen 397 PAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGG 475 (997)
T ss_pred chhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCC
Confidence 999999999999999999999999999999999998888889999999999999999999999998874 7999999999
Q ss_pred CcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCc---eEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 233 TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRV---SFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 233 ~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~---~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
.....+...+..++.|+||||+++.+.+..+.-.+.++ .++|+||+|++.+.+|.++...|++.+++..|.+++|||
T Consensus 476 ~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 476 SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhh
Confidence 99999999999999999999999999988776555554 599999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEec-cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHH
Q 008443 310 MPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCD 388 (565)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~ 388 (565)
.++.++.++...+..|+.+.+........++.+.+..+. ..+|...|.++|..+.. ..++||||.+.+.|+
T Consensus 556 fpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e--------~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 556 FPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE--------DGKTIIFVDKQEKAD 627 (997)
T ss_pred hhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh--------cCCEEEEEcCchHHH
Confidence 999999999999999999888887888888888888888 78899999999988765 236999999999999
Q ss_pred HHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccC
Q 008443 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 389 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~ 468 (565)
.+.+.|.+.|+.|..+||+.++.+|..+++.|++|.+.+||+|+++++|+|++++.+||+||.|....+|+||+||+||+
T Consensus 628 ~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 628 ALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred HHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccccHHHHHHHHHHHhhhccCCcchhhhhhhHHHHHHHHHHHhcCcccccccccccCCCccchhHHH
Q 008443 469 GSMGQATSFYTDRDMLLVAQIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMGPSVNIEDKYR 545 (565)
Q Consensus 469 g~~g~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yr 545 (565)
|+.|.+++|+.+.+..+...|.+.+...+.... -... ....+............+..+ ++.|.+++..+-|+
T Consensus 708 grkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P--~~l~--~l~~~f~~~~~~~~s~~~~~G-g~~G~g~~~~~~~~ 779 (997)
T KOG0334|consen 708 GRKGAAVTFITPDQLKYAGDLCKALELSKQPVP--KLLQ--ALSERFKAKQKAGGSQVHGGG-GFGGKGLKFDEVEE 779 (997)
T ss_pred CccceeEEEeChHHhhhHHHHHHHHHhccCCCc--hHHH--HHHHHHHhhhhcccccccccC-cccCCcccccHHHH
Confidence 999999999999999999999999955443333 1111 111111111112222222222 47777888887777
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-53 Score=402.86 Aligned_cols=367 Identities=33% Similarity=0.538 Sum_probs=329.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCC-CCCCCCeEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALV 199 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~-~~~~~~~~Li 199 (565)
.+|++++|++.+++++.+.||.+||-+|..|||.+++|+|++..|.||||||.+|++|+++.++..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 679999999999999999999999999999999999999999999999999999999999999987654 4557899999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCC-CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC-CCCCCceEEEecc
Q 008443 200 LAPTRELAQQIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDE 277 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~-~~~~~~~~iIiDE 277 (565)
+|||+||+.|++..+.++...+. .+++..+..+.+.......+...++|||+||++++.++..+. ..++.+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999998876553 566666776666666667778889999999999999998876 6788899999999
Q ss_pred hhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCC-CCceEEEEEEeccchHHHHH
Q 008443 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 356 (565)
||.++.-||...+..+..++|+..|.++||||+..++..+-+.++.+|+.+.....+.+ ...+.+....+...+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999888776655 34677778888888888777
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc----
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD---- 432 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~---- 432 (565)
+.++.-....+ +.|||+|+.+.|-.+.-+|...|++..++.|.++...|..++++|..|-.+++||||
T Consensus 259 yallKL~LI~g--------KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 259 YALLKLRLIRG--------KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred HHHHHHHHhcC--------ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 77766555432 599999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------ccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc
Q 008443 433 -------------------------------VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 433 -------------------------------~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
-.++|||+.+|.+|++||.|.+...|+||+||++|++++|.++.|+.+.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 2468999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhh
Q 008443 482 DMLLVAQIKKAIVD 495 (565)
Q Consensus 482 d~~~~~~l~~~~~~ 495 (565)
+......++..+.+
T Consensus 411 e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 411 EEFGKESLESILKD 424 (569)
T ss_pred HHhhhhHHHHHHhh
Confidence 88866666655544
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-53 Score=412.56 Aligned_cols=384 Identities=30% Similarity=0.486 Sum_probs=312.4
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCC-----
Q 008443 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG----- 190 (565)
Q Consensus 117 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~----- 190 (565)
+..+..|..++++.+++++|...||..|+++|...||.+..| .|+|..|.||||||++|.+|+++.+++.....
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 456778999999999999999999999999999999999999 68999999999999999999999555432110
Q ss_pred -CCCCC--eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC--
Q 008443 191 -RGDGP--LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-- 265 (565)
Q Consensus 191 -~~~~~--~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-- 265 (565)
...++ ..||++|||||+.|+.+.+..+.... ++.+..++||.....+.+.++..++|||+||++|+.++..+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 01233 49999999999999999999998864 7999999999999999999999999999999999999987654
Q ss_pred -CCCCceEEEecchhhhhhCCCHHHHHHHHHhCC-----CCCeEEEEeccccHHHHHHHHh-----------------h-
Q 008443 266 -SLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEIEALAQG-----------------Y- 321 (565)
Q Consensus 266 -~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~~~~~~~~~~-----------------~- 321 (565)
.+.++.++|+||+|+|.+.|+...+..++..+. ...|.+.||||+......-... +
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 567799999999999999999999998887774 4578999999996443221111 1
Q ss_pred -----cCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHH------HHhhhccCCCCCeEEEEEcchhhHHHH
Q 008443 322 -----LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE------AFLAEKSCHPFPLTIVFVERKTRCDEV 390 (565)
Q Consensus 322 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~lvF~~~~~~a~~l 390 (565)
..+|..+.. .........+.+.+... .+..-.....++++|||||++..+..|
T Consensus 416 k~ig~~~kpkiiD~----------------t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRL 479 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDL----------------TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRL 479 (731)
T ss_pred HHhCccCCCeeEec----------------CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHH
Confidence 111111111 11112222222222111 000001112356899999999999999
Q ss_pred HHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCC
Q 008443 391 SEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS 470 (565)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~ 470 (565)
.-+|+..+++...+|+.|.+.+|...+++|++..-.||||||++++|+|||+|++||||-.|.+...|+||.||+.|++.
T Consensus 480 t~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 480 TVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeccccHHHHHHHHHHHhhhccCCcchhhhhhhHHHHHHHH
Q 008443 471 MGQATSFYTDRDMLLVAQIKKAIVDAESGNAVAFATGKVARRKEREA 517 (565)
Q Consensus 471 ~g~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (565)
.|..+.++.+.+...+..|++-+...++...++.....+...+++..
T Consensus 560 ~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvr 606 (731)
T KOG0347|consen 560 EGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVR 606 (731)
T ss_pred CCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHH
Confidence 99999999999999999999999998888877765555444444433
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.2e-49 Score=425.74 Aligned_cols=349 Identities=24% Similarity=0.286 Sum_probs=267.6
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 127 ~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
.+++.+.+.|.+.||.+|+++|.++++.+++|+|+++.+|||||||++|++|+++.+... .+.++|||+|+++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999988763 36789999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC----CCCCCCceEEEecchhhhh
Q 008443 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRML 282 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~----~~~~~~~~~iIiDE~H~~~ 282 (565)
+.|+.+.++.+. ..++.+..+.|+..... ...+..+++|+|+||++|...+... ...++++++|||||+|.+.
T Consensus 94 a~q~~~~l~~l~--~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 94 AADQLRAVRELT--LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHHHHHhc--cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999999999986 23577888888876543 3455667999999999986443321 1237889999999999986
Q ss_pred hCCCHHHHHHH-------HHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEec-----c-
Q 008443 283 DMGFEPQIREV-------MQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVS-----E- 349 (565)
Q Consensus 283 ~~~~~~~~~~i-------~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 349 (565)
+ .|+..+..+ ....+.+.|++++|||+++..+ ....++..+..+ +.....+.......+.... .
T Consensus 171 g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 G-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccc
Confidence 5 355554443 3344567899999999988765 566677666544 2222222211111111000 0
Q ss_pred ------chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--------CCceEEecCCCChhhHHH
Q 008443 350 ------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRES 415 (565)
Q Consensus 350 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~ 415 (565)
..........+...... ..++||||+++..|+.++..|... +..+..+||++++++|..
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~-------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ 320 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE-------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRE 320 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC-------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHH
Confidence 00011112222222111 125999999999999999988764 567889999999999999
Q ss_pred HHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEecc--ccHHHHHHHHHHH
Q 008443 416 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD--RDMLLVAQIKKAI 493 (565)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~--~d~~~~~~l~~~~ 493 (565)
++++|++|++++||||+++++|||||++++||+++.|.+...|+||+||+||.|+.|.++++... .|...+...++.+
T Consensus 321 ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 321 LERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999863 4555555555444
Q ss_pred h
Q 008443 494 V 494 (565)
Q Consensus 494 ~ 494 (565)
.
T Consensus 401 ~ 401 (742)
T TIGR03817 401 D 401 (742)
T ss_pred c
Confidence 3
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-49 Score=366.88 Aligned_cols=362 Identities=31% Similarity=0.499 Sum_probs=311.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008443 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 116 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~ 193 (565)
+-....+|+++.|.|++++.+..++|.+|+.+|+.|+|.++.. +++|..+..|+|||.+|.+.++..+-... .
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-----~ 159 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-----V 159 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-----c
Confidence 3456899999999999999999999999999999999999965 67999999999999999999888765432 3
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc-CCCCCCCceE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSF 272 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~ 272 (565)
-|+++.|+|+++|+.|+.+.+.+..+.. ++...+...+.....-. . -..+|+|+||+.+.++... ..+.+..+..
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~-~--i~eqIviGTPGtv~Dlm~klk~id~~kikv 235 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN-K--LTEQIVIGTPGTVLDLMLKLKCIDLEKIKV 235 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC-c--chhheeeCCCccHHHHHHHHHhhChhhceE
Confidence 5779999999999999999999988765 67777766664221111 1 1257999999999998877 6678889999
Q ss_pred EEecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccc-
Q 008443 273 VILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSEN- 350 (565)
Q Consensus 273 iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (565)
+|+|||+.+.+ .||.+.-..|+..+++++|++++|||.......++.....++..+.+........++.+++..+...
T Consensus 236 fVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 236 FVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRD 315 (477)
T ss_pred EEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchh
Confidence 99999999886 4688888999999999999999999999999999999999999999988888888999988888654
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEe
Q 008443 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
+|.+.+..+. ..... +..||||.++..|..++..+...|..+..+||++...+|..+++.|+.|..+|||+
T Consensus 316 ~K~~~l~~ly-g~~ti--------gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 316 DKYQALVNLY-GLLTI--------GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred hHHHHHHHHH-hhhhh--------hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 4555555532 22211 24999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccCccEEEEcCCCC------CccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHHhh
Q 008443 431 TDVASRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVD 495 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~-d~~~~~~l~~~~~~ 495 (565)
|+++++|||++.|++||+||.|- +...|+||+||+||.|+.|.++.+++.. +...+..|++.+..
T Consensus 387 TnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 387 TNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred echhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 99999999999999999999984 7889999999999999999999999876 56667777776643
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-49 Score=371.39 Aligned_cols=358 Identities=37% Similarity=0.634 Sum_probs=324.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
+.+|++++|.+++++.+...||.+|+.+|+.|+..+..|.|+.+.+.+|+|||.+|.+++++.+-... ....+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-----ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-----KETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch-----HHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999998888753221 3456999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH-HHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecch
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 278 (565)
++|+++|+.|+.+....+.... +..+..+.||....... ......+.|+++||+++++.+....+..+.+.+.|+||+
T Consensus 100 laPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred hcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 9999999999998888887664 67788788887766443 334456899999999999999998888889999999999
Q ss_pred hhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHH
Q 008443 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (565)
+.++..+|...+..|++.++++.|++++|||.+.++....+.++.+|..+.+...+.....+.+.+..+..++|...+..
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999998888778888899988888888887777
Q ss_pred HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCC
Q 008443 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
+.. . .. ..+||||+++.+..+...|...++.+..+|+++.+.+|..+++.|+.|..+|||+|+.+++|+
T Consensus 259 l~~-~---~~-------q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 259 LYR-R---VT-------QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred HHH-h---hh-------cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 766 1 11 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
|+..+..||+|+.|.....|+||+||+||.|.+|.++.++...|...++++++.+.
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~ 383 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN 383 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcC
Confidence 99999999999999999999999999999999999999999999998888886653
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.4e-48 Score=401.31 Aligned_cols=326 Identities=20% Similarity=0.336 Sum_probs=252.7
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
..+|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.++.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999998753 45699999999999999888875
Q ss_pred HHhcCCCceEEEEECCCcHHHHHHH----HhCCCeEEEECchHHHHHH-HcCCC-CCCCceEEEecchhhhhhCC--CHH
Q 008443 217 LSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHL-QQGNT-SLSRVSFVILDEADRMLDMG--FEP 288 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~-~~~~~-~~~~~~~iIiDE~H~~~~~~--~~~ 288 (565)
. ++....+.++....+.... ..+.++|+++||+.+.... ....+ ...++++|||||||+++++| |..
T Consensus 74 ~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 74 S-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred c-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 4 4667777777665533222 3456899999999975322 11112 46789999999999999876 666
Q ss_pred HHHHH---HHhCCCCCeEEEEeccccHHHHHHHHhhcC--CCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008443 289 QIREV---MQNLPDKHQTLLFSATMPVEIEALAQGYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 289 ~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 363 (565)
.+..+ ...+ ++.+++++|||++......+...+. .+..+... .. ..++....... .......+...+.+.
T Consensus 149 ~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~--r~nl~~~v~~~-~~~~~~~l~~~l~~~ 223 (470)
T TIGR00614 149 DYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FD--RPNLYYEVRRK-TPKILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CC--CCCcEEEEEeC-CccHHHHHHHHHHHh
Confidence 66554 3444 4678999999999887655544432 33332221 11 12222221111 112333444444321
Q ss_pred HHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCc
Q 008443 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 364 ~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v 443 (565)
.+...+||||+++++|+.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|
T Consensus 224 --------~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V 295 (470)
T TIGR00614 224 --------FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDV 295 (470)
T ss_pred --------cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccc
Confidence 122357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHH
Q 008443 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 491 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~ 491 (565)
++||++++|.+...|+||+|||||.|.+|.+++++...|...++.+..
T Consensus 296 ~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 296 RFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred eEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877776643
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.2e-48 Score=383.32 Aligned_cols=360 Identities=28% Similarity=0.474 Sum_probs=312.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 008443 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 116 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~ 195 (565)
.+.....|+.+-|..+++..|+..+|..|+++|..|||.+..+-|+||.+..|+|||++|.+.+++.+.-. ...+
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~~~ 94 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SSHI 94 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cCcc
Confidence 35567789999999999999999999999999999999999999999999999999999977776654432 3577
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEe
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIi 275 (565)
+.+||+|||+|+.|+.+++..++....++....++||+........+. .++|+||||+++.++...+.+++..++++|+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 899999999999999999999998888899999999998776655554 4889999999999999999999999999999
Q ss_pred cchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHH
Q 008443 276 DEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (565)
Q Consensus 276 DE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (565)
||||.+.+ ..|...+..|+..++...|++.+|||.+..+...+..++.+|..+...........+.+.+..........
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchH
Confidence 99999998 56999999999999999999999999999999999999999999998887777777777776654432111
Q ss_pred HHHH-HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc
Q 008443 355 RLLA-LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (565)
Q Consensus 355 ~l~~-~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (565)
..++ .+...... ...-+...+||||+....|+.++.+|...|+.|..+.|.|++.+|..+++.++.-.++|||+||+
T Consensus 254 eemrlklq~L~~v--f~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDL 331 (980)
T KOG4284|consen 254 EEMRLKLQKLTHV--FKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDL 331 (980)
T ss_pred HHHHHHHHHHHHH--HhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecch
Confidence 1111 11111000 01112234999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccH
Q 008443 434 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 434 ~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
.++|||-|+|++||++|+|.+...|.||+|||||.|..|.+++|+.....
T Consensus 332 taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 332 TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999987543
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-48 Score=368.30 Aligned_cols=361 Identities=38% Similarity=0.555 Sum_probs=333.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
-..|..+||+..+++++.+.||..|+|+|++.+|.++++++++..+-||+|||.+|++|+++.+.... ..|-++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 35799999999999999999999999999999999999999999999999999999999999887653 24788999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
+.|+++|+.|..+.++.+.... +++.++++||....++...+..+.|||++||+++.+..-.-.+.++.+.|||+||++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred ccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999998875 689999999999999999999999999999999987776666888999999999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (565)
++..+||..++.+++..++...|.++||||+|+.+-.+++..+.+|..+.+.-.......+...+..+...+|...|+..
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877777777777778888888998888888
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCC
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+..... ..+++|||.++.+++.+...|+..|+.+..++|.+++..|..-+.+|+.++..+||.||++++|+|
T Consensus 255 l~~~~~--------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 255 LGGRIK--------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred Hhcccc--------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 776543 224999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008443 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~ 493 (565)
||-.+.||+||.|.+...|+||+||+.|+|..|.++.++.+.|.+++-.|...+
T Consensus 327 iplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 327 IPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred CccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhc
Confidence 999999999999999999999999999999999999999999998888775443
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.8e-47 Score=407.53 Aligned_cols=336 Identities=21% Similarity=0.295 Sum_probs=255.5
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 127 CLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 127 ~l~~~l~~~l~-~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
+....+...++ .+|+..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++.+|||+|+++
T Consensus 443 pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLiS 511 (1195)
T PLN03137 443 PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLVS 511 (1195)
T ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHHH
Confidence 34445544444 479999999999999999999999999999999999999998753 457999999999
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh------CCCeEEEECchHHHH--HHHcC--CC-CCCCceEEE
Q 008443 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR------GGVSIVVATPGRFLD--HLQQG--NT-SLSRVSFVI 274 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ilv~T~~~l~~--~~~~~--~~-~~~~~~~iI 274 (565)
|+.++...+... ++....+.++....+....+. +.++||++||++|.. .+... .+ ....+.+||
T Consensus 512 LmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 512 LIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 998655555442 577888888887766544432 568999999999852 11111 11 234588999
Q ss_pred ecchhhhhhCC--CHHHHHHH--HHhCCCCCeEEEEeccccHHHHHHHHhhcCCCe-EEEecCcCCCCCceEEEEEEecc
Q 008443 275 LDEADRMLDMG--FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQGYLTDPV-QVKVGKVSSPTANVIQILEKVSE 349 (565)
Q Consensus 275 iDE~H~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 349 (565)
|||||+++++| |.+.++.+ +....+..+++++|||++..+...+...+.... .+.... ...+++... ....
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpNL~y~--Vv~k 662 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--FNRPNLWYS--VVPK 662 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccceEEE--Eecc
Confidence 99999999987 77777763 333345678999999999887765555443221 121111 112233221 1222
Q ss_pred chH-HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEE
Q 008443 350 NEK-VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 350 ~~~-~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
..+ ...+...+... ....++||||.++..|+.+++.|...|+.+..+||+|++.+|..++++|.+|+++||
T Consensus 663 ~kk~le~L~~~I~~~--------~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 663 TKKCLEDIDKFIKEN--------HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred chhHHHHHHHHHHhc--------ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 111 22333332211 112358999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 008443 429 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~ 490 (565)
|||+++++|||+|+|++||+++.|.++..|+|++|||||.|.+|.|++||...|......+.
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988876555553
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-47 Score=367.54 Aligned_cols=365 Identities=28% Similarity=0.406 Sum_probs=286.1
Q ss_pred CCCCCCcccCCCCHHHH----------HHHHHCCCCCCCHHHHHHHHHHh---------cCCCEEEEccCCCchHHHHHH
Q 008443 117 PAPIESFTDMCLHPSIM----------KDIEFHEYTRPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTI 177 (565)
Q Consensus 117 p~~~~~~~~~~l~~~l~----------~~l~~~~~~~~~~~Q~~al~~l~---------~~~~~lv~a~TGsGKT~~~~l 177 (565)
+.....|..++++..+. +.+.++++..+.|+|..++|+++ .++|++|.||||||||++|.+
T Consensus 123 ~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~i 202 (620)
T KOG0350|consen 123 NNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVI 202 (620)
T ss_pred CCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehh
Confidence 34455666677666544 44889999999999999999996 357899999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCC-----CeEEEEC
Q 008443 178 PMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-----VSIVVAT 252 (565)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~Ilv~T 252 (565)
|+++.+..++. +.-|+|||+|+++|+.|++++|.++.... ++.++.+.|....+.....+.+. .||+|+|
T Consensus 203 PIVQ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 203 PIVQLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHHHHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 99997765432 34679999999999999999999999875 78899999998888777676542 4899999
Q ss_pred chHHHHHHHc-CCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCC--------------------------------
Q 008443 253 PGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-------------------------------- 299 (565)
Q Consensus 253 ~~~l~~~~~~-~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~-------------------------------- 299 (565)
|++|.+++.. ..+.+++++|+||||+|++++..|..++..++.....
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999999984 5789999999999999999998888877666544321
Q ss_pred --CCeEEEEeccccHHHHHHHHhhcCCCeEEEec----CcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCC
Q 008443 300 --KHQTLLFSATMPVEIEALAQGYLTDPVQVKVG----KVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 373 (565)
Q Consensus 300 --~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 373 (565)
..+.+.+|||+...-..+...-+..|....+. .....+..+.+.........+...+...+.....
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~-------- 429 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKL-------- 429 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhc--------
Confidence 11345667777655555555445555322222 1122223333333444444555555555554332
Q ss_pred CCeEEEEEcchhhHHHHHHHHH----HCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEc
Q 008443 374 FPLTIVFVERKTRCDEVSEALV----AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
.++|+|+++...+..++..|+ .....+-.++|.++...|...++.|+.|++++|||+|++++|+|+-+|+.||+|
T Consensus 430 -~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 430 -NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINY 508 (620)
T ss_pred -ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeec
Confidence 259999999999999998887 235566679999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 450 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 450 ~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
|+|.+...|+||+||++|+|+.|.|+++.+..+...|..+.+....
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999999999999999988777776555443
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.7e-46 Score=395.83 Aligned_cols=326 Identities=22% Similarity=0.345 Sum_probs=251.4
Q ss_pred HHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHH
Q 008443 133 MKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 133 ~~~l~-~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~ 211 (565)
.+.|+ .+|+..|+|+|+++++.++.|+++++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHHH
Confidence 33443 379999999999999999999999999999999999999998753 446999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEECCCcHHHHHHH----HhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC--
Q 008443 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-- 285 (565)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-- 285 (565)
+.++.. ++....+.++....+.... ..+..+++++||+++........+...++++|||||||++.++|
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 888764 4556666666655543322 23568999999999864322223444578999999999999876
Q ss_pred CHHHHHHH---HHhCCCCCeEEEEeccccHHHHHHHHhhc--CCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008443 286 FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQGYL--TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 286 ~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 360 (565)
|.+.+..+ ...+ ++.+++++|||++......+...+ .++... ..... .+++.. ...........+...+
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~--r~nl~~--~v~~~~~~~~~l~~~l 231 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPNIRY--TLVEKFKPLDQLMRYV 231 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC--CCccee--eeeeccchHHHHHHHH
Confidence 66655544 3444 467899999999887655443332 233322 22211 122221 1122222333344333
Q ss_pred HHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCc
Q 008443 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 440 (565)
.. ....++||||+++++|+.+++.|...|+.+..+||++++++|..+++.|++|+++|||||+++++|||+
T Consensus 232 ~~---------~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 232 QE---------QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred Hh---------cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 22 123469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 441 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 441 p~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
|+|++||++|.|.|...|+|++|||||.|.+|.+++++++.|...++.+
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987766554
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-46 Score=369.13 Aligned_cols=374 Identities=34% Similarity=0.526 Sum_probs=312.9
Q ss_pred CCCCCCCCCCCcccC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcC
Q 008443 112 GSVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT 187 (565)
Q Consensus 112 ~~~~~p~~~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~ 187 (565)
.+.+.|.++.+|.++ ..++.+++++...+|..|+++|++|+|.++.+++++.++|||+|||++|.+|++.++....
T Consensus 123 ~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~ 202 (593)
T KOG0344|consen 123 DGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLS 202 (593)
T ss_pred cCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhh
Confidence 456779999999984 6889999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCCeEEEEcCchhhHHHHHHHHHHHH--hcCCCceEEEEECCCc-HHHHHHHHhCCCeEEEECchHHHHHHHcCC
Q 008443 188 PVGRGDGPLALVLAPTRELAQQIEKEVKALS--RSLDSFKTAIVVGGTN-IAEQRSELRGGVSIVVATPGRFLDHLQQGN 264 (565)
Q Consensus 188 ~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~ 264 (565)
......|-+++|+.|+++|+.|++.++.++. ... ......+..... ...........++|+++||-++...+..+.
T Consensus 203 ~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~ 281 (593)
T KOG0344|consen 203 QEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK 281 (593)
T ss_pred cccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC
Confidence 3334567899999999999999999999987 322 222222222211 111111223458999999999988888765
Q ss_pred --CCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCC-CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCce
Q 008443 265 --TSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANV 340 (565)
Q Consensus 265 --~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (565)
..+..+.++|+||+|.+.+. .|..++..|+.... +...+-+||||.+..++++++....+...+.++..+.....+
T Consensus 282 ~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V 361 (593)
T KOG0344|consen 282 LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETV 361 (593)
T ss_pred ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhh
Confidence 67888999999999999988 78888888877664 456677899999999999999999998888888777666667
Q ss_pred EEEEEEecc-chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHH-HHCCCceEEecCCCChhhHHHHHH
Q 008443 341 IQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL-VAEGLHAVALHGGRNQSDRESALR 418 (565)
Q Consensus 341 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~ 418 (565)
.+....+.. ..|...+.+.+..- -.+|+|||+.+.+.|..|.+.| --.++++..+||+.++.+|++.++
T Consensus 362 ~QelvF~gse~~K~lA~rq~v~~g---------~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 362 DQELVFCGSEKGKLLALRQLVASG---------FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hhhheeeecchhHHHHHHHHHhcc---------CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHH
Confidence 766666654 34444444444332 3357999999999999999999 567899999999999999999999
Q ss_pred hhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 419 DFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
+|+.|++.||+||+++++|+|+.+|++||+||.|.+...|+||+||+||+|+.|.+++||++.|.+.++-+...+..
T Consensus 433 ~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 433 RFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred HHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777765
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.8e-45 Score=390.64 Aligned_cols=321 Identities=23% Similarity=0.374 Sum_probs=254.7
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+||..++++|.++++.+++|+++++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.++.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999999999999998742 446899999999999999888874
Q ss_pred HhcCCCceEEEEECCCcHHHHHHH----HhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC--CHHHHH
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~ 291 (565)
++.+..+.++....+.... ..+..+|+++||+++........+...++++|||||||++.++| |.+.+.
T Consensus 77 -----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 -----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 4567777777766544332 34678999999999965444334556689999999999998865 677666
Q ss_pred HH---HHhCCCCCeEEEEeccccHHHHHHHHhhcC--CCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHh
Q 008443 292 EV---MQNLPDKHQTLLFSATMPVEIEALAQGYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 366 (565)
Q Consensus 292 ~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 366 (565)
.+ ...++ +.+++++|||++......+...+. ++..+. .. ...+++.. .......+...+...+...
T Consensus 152 ~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl~~--~v~~~~~~~~~l~~~l~~~--- 222 (591)
T TIGR01389 152 RLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNLRF--SVVKKNNKQKFLLDYLKKH--- 222 (591)
T ss_pred HHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCcEE--EEEeCCCHHHHHHHHHHhc---
Confidence 55 34444 445999999999887766655543 222221 11 11222222 2222334444555554332
Q ss_pred hhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEE
Q 008443 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (565)
Q Consensus 367 ~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~V 446 (565)
...++||||+++..|+.+++.|...|+.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|+|++|
T Consensus 223 ------~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 223 ------RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred ------CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 12359999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 447 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 447 i~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
|++++|.|...|+|++|||||.|..|.+++++...|....+.+
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999999998887665554
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6e-45 Score=398.90 Aligned_cols=338 Identities=23% Similarity=0.331 Sum_probs=255.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~-l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.|+++++++.+.+.+.+.|+.+|+|+|.+|++. +..|+++++++|||+|||++|.++++..+.. ++++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 367889999999999999999999999999998 6789999999999999999999999887742 6679999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|..+.|+++.. . ++.+..++|+..... .....++|+|+||+++..++......++++++|||||+|.
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 9999999999999997643 2 578888888865433 2234689999999999888876656678999999999999
Q ss_pred hhhCCCHHHHHHHHHhC---CCCCeEEEEeccccHHHHHHHHhhcCC--------CeEEEecCcCCCCCceEEEEEEecc
Q 008443 281 MLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQGYLTD--------PVQVKVGKVSSPTANVIQILEKVSE 349 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (565)
+.+.+++..+..++..+ .+..|++++|||+++. ..+.. ++.. |..+..................+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 98888888887765544 5678999999999753 22222 2221 1111000000000000000000110
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--------------------------------
Q 008443 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------- 397 (565)
Q Consensus 350 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------------------------------- 397 (565)
..+ ......+.+... ..+++||||+++..|+.+++.|...
T Consensus 227 ~~~-~~~~~~~~~~~~-------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 227 PSK-DDTLNLVLDTLE-------EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred ccc-hHHHHHHHHHHH-------cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 111 122222222211 2236999999999999988887643
Q ss_pred ----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cC-----CCCCccchhhhhcc
Q 008443 398 ----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-----LPKTVEDYVHRIGR 464 (565)
Q Consensus 398 ----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~-----~~~s~~~~~Q~~GR 464 (565)
...+..+|+++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 136889999999999999999999999999999999999999999999987 65 57889999999999
Q ss_pred cccCCCc--eeEEEEecccc
Q 008443 465 TGRGGSM--GQATSFYTDRD 482 (565)
Q Consensus 465 agR~g~~--g~~~~~~~~~d 482 (565)
|||.|.+ |.+++++...+
T Consensus 379 AGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCCCCceEEEEecCch
Confidence 9999865 89999987653
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.2e-44 Score=393.50 Aligned_cols=343 Identities=22% Similarity=0.269 Sum_probs=249.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC-CCCCCeEEEEcCchhh
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVLAPTREL 206 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~-~~~~~~~Lil~P~~~L 206 (565)
+++.+.+.+. .+|..|+++|++|++.+++|+++|++||||||||++|+++++..+....... ..++.++|||+|+++|
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 5555555544 4788999999999999999999999999999999999999999887643211 1346789999999999
Q ss_pred HHHHHHHHHHHH-----------hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC--CCCCceEE
Q 008443 207 AQQIEKEVKALS-----------RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFV 273 (565)
Q Consensus 207 ~~Q~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~--~~~~~~~i 273 (565)
+.|+.+.+...+ ...+++.+...+|+....+....+...++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 999988665322 12225788899999988887777778899999999999777654432 46789999
Q ss_pred EecchhhhhhCCCHHHHH----HHHHhCCCCCeEEEEeccccHHHHHHHHhhcC-------CCeEEEecCcCCCCCceEE
Q 008443 274 ILDEADRMLDMGFEPQIR----EVMQNLPDKHQTLLFSATMPVEIEALAQGYLT-------DPVQVKVGKVSSPTANVIQ 342 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~----~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 342 (565)
||||+|.+.+..++..+. ++....++..|++++|||+++. ......+.. .+..+.... ......+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccC-CCccceEEE
Confidence 999999998766555443 3444444678999999998752 222222211 111111111 000011100
Q ss_pred E-----EEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC------CCceEEecCCCChh
Q 008443 343 I-----LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQS 411 (565)
Q Consensus 343 ~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~------~~~~~~~~~~~~~~ 411 (565)
. ............+...+.+.... ..++||||+++..|+.++..|... +..+..+||+++++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~-------~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKE-------HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE 327 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH
Confidence 0 00011111222333333332221 125999999999999999999873 46799999999999
Q ss_pred hHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCC-CceeEEEEecc
Q 008443 412 DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG-SMGQATSFYTD 480 (565)
Q Consensus 412 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g-~~g~~~~~~~~ 480 (565)
+|..+++.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++...
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999864 34444444443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.4e-44 Score=388.50 Aligned_cols=339 Identities=22% Similarity=0.297 Sum_probs=256.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~-l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.|+++++++.+.+.+++.|+.+|+|+|.+|++. +..|+++++++|||+|||++|.++++..+... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 467889999999999999999999999999986 78999999999999999999999999887652 6789999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|+++.|+.+.. . ++.+..++|+..... ...+.++|+|+||+++..++......++++++|||||+|.
T Consensus 75 ~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred eChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc
Confidence 9999999999999987543 2 678888998876433 2235689999999999888776666788999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCC-ceE-EEEEEeccc--hH-HHH
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTA-NVI-QILEKVSEN--EK-VDR 355 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~--~~-~~~ 355 (565)
+.+.+++..+..++..+..+.|++++|||+++. ..+.. ++...... ......+.. .+. +.+...... .+ ...
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc-CCCCCCcceeeEecCCeeeccCcchhcchHH
Confidence 988888999999999998889999999999753 33333 33322111 000000000 000 001111111 01 111
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC---------------------------------CCceE
Q 008443 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------------------------------GLHAV 402 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~---------------------------------~~~~~ 402 (565)
+...+.+... ...++||||+++..|+.++..|... ...+.
T Consensus 227 ~~~~~~~~i~-------~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 299 (720)
T PRK00254 227 WESLVYDAVK-------KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA 299 (720)
T ss_pred HHHHHHHHHH-------hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE
Confidence 2222222221 1235999999999998877666321 23588
Q ss_pred EecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE-------cCCC-CCccchhhhhcccccCC--Cce
Q 008443 403 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-------LDLP-KTVEDYVHRIGRTGRGG--SMG 472 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~-------~~~~-~s~~~~~Q~~GRagR~g--~~g 472 (565)
.+|+++++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.+ .+..+|+||+|||||.| ..|
T Consensus 300 ~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G 379 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVG 379 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCc
Confidence 9999999999999999999999999999999999999999999984 3333 24668999999999975 569
Q ss_pred eEEEEecccc
Q 008443 473 QATSFYTDRD 482 (565)
Q Consensus 473 ~~~~~~~~~d 482 (565)
.+++++...+
T Consensus 380 ~~ii~~~~~~ 389 (720)
T PRK00254 380 EAIIVATTEE 389 (720)
T ss_pred eEEEEecCcc
Confidence 9999987654
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.6e-42 Score=376.53 Aligned_cols=321 Identities=19% Similarity=0.220 Sum_probs=247.4
Q ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 128 LHPSIMKDIEF-HEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 128 l~~~l~~~l~~-~~~~~~~~~Q~~al~~l~~~------~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.+..+.+.+.. .+| +||+.|.+|++.+.++ .+.|++|+||+|||++|+++++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 34455555544 466 6999999999999874 689999999999999998888876643 6789999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
+||++|+.|+++.|++++... ++.+..++|+....+....+ .+.++||||||..+ ...+.+.++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVID 580 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIID 580 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEee
Confidence 999999999999999998765 57888888877655443322 34689999999533 344678899999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHH
Q 008443 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 356 (565)
|+|++. ...+..+..++.+.++++|||||.............++..+....... ..+...+..... ..+
T Consensus 581 Eahrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i 649 (926)
T TIGR00580 581 EEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELV 649 (926)
T ss_pred cccccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHH
Confidence 999853 334556667777889999999997766555544555554444332211 123222222211 122
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
...+...... .+++++||+++++++.+++.|.+. ++++..+||+|++.+|+.++++|++|+++|||||+++
T Consensus 650 ~~~i~~el~~-------g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ii 722 (926)
T TIGR00580 650 REAIRRELLR-------GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTII 722 (926)
T ss_pred HHHHHHHHHc-------CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 2222222221 235999999999999999999985 7899999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCC-CccchhhhhcccccCCCceeEEEEeccc
Q 008443 435 SRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
++|+|+|++++||+++.+. +...|.|++||+||.|+.|.|++++...
T Consensus 723 e~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 723 ETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred hcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999865 6778999999999999999999998654
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.1e-41 Score=375.96 Aligned_cols=315 Identities=18% Similarity=0.188 Sum_probs=245.2
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 134 KDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~al~~l~~~------~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
+.....+| .||+.|.+|++.++.+ .++|++|+||+|||.+|+.+++..+. ++++++||+||++|+
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHH
Confidence 33455666 7999999999999876 78999999999999999777665432 378899999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh----CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh
Q 008443 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
.|+++.|++.+... ++.+..++|+....++...+. +.++|||+||+.+. ..+.+.++++|||||+|++.
T Consensus 663 ~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG- 735 (1147)
T PRK10689 663 QQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG- 735 (1147)
T ss_pred HHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc-
Confidence 99999999988764 477888888887766654432 57899999997542 33567889999999999973
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008443 284 MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 284 ~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 363 (565)
+. ....+..++.+.|++++||||......+....+.++..+....... ..+............... +...
T Consensus 736 --~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~----il~e 805 (1147)
T PRK10689 736 --VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREA----ILRE 805 (1147)
T ss_pred --hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHH----HHHH
Confidence 22 2455677778899999999998777777766777776665433221 123333222221111112 2221
Q ss_pred HHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCcc
Q 008443 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 441 (565)
Q Consensus 364 ~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip 441 (565)
... .++++|||++++.++.+++.|.+. +.++..+||+|++.+|++++.+|++|+++|||||+++++|+|+|
T Consensus 806 l~r-------~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 806 ILR-------GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred Hhc-------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccc
Confidence 111 235999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCC-CCccchhhhhcccccCCCceeEEEEeccc
Q 008443 442 GVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 442 ~v~~Vi~~~~~-~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
++++||+.+.+ .+...|+|++||+||.|+.|.|++++...
T Consensus 879 ~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 99999966553 36678999999999999999999998653
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.7e-42 Score=371.66 Aligned_cols=334 Identities=20% Similarity=0.273 Sum_probs=246.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
.|.++++++.+++.+.+.++. |+++|.++++.+..++++++++|||+|||+++.++++..+.. ++++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 366788999999999999886 999999999999999999999999999999998888876653 56799999
Q ss_pred CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh
Q 008443 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+++|+.|.++.++++.. . +..+...+|+..... .....++|+|+||+++..++..+...+.++++|||||+|++
T Consensus 73 P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 73 PLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred chHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 999999999999998643 2 577888888765432 12246899999999998888776666889999999999999
Q ss_pred hhCCCHHHHHHHHH---hCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEE----EEeccchH-H
Q 008443 282 LDMGFEPQIREVMQ---NLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQIL----EKVSENEK-V 353 (565)
Q Consensus 282 ~~~~~~~~~~~i~~---~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~ 353 (565)
.+.+++..+..++. ..+++.|++++|||+++. ..+.. ++.... +.... .+.+-..... .......+ .
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~~~~--r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IKSNF--RPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cCCCC--CCCCeEEEEEecCeeeeccccccc
Confidence 88777777776654 445678999999999753 33333 332211 10000 0000000000 00111111 1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-------------------------CCceEEecCCC
Q 008443 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------GLHAVALHGGR 408 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------------------------~~~~~~~~~~~ 408 (565)
..+...+.+.. ...+++||||++++.|+.+++.|... ...+..+||++
T Consensus 223 ~~~~~~i~~~~-------~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 223 VDINSLIKETV-------NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred ccHHHHHHHHH-------hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11222222211 12236999999999999999888653 12477899999
Q ss_pred ChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCC---------CCCccchhhhhcccccCCC--ceeEEEE
Q 008443 409 NQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL---------PKTVEDYVHRIGRTGRGGS--MGQATSF 477 (565)
Q Consensus 409 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~---------~~s~~~~~Q~~GRagR~g~--~g~~~~~ 477 (565)
++++|..+++.|++|.++|||||+++++|+|+|+. .||+.+. |.+..+|.||+|||||.|. .|.++++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 99999999999999999999999999999999986 4554443 4577789999999999985 5778887
Q ss_pred ecccc
Q 008443 478 YTDRD 482 (565)
Q Consensus 478 ~~~~d 482 (565)
+...+
T Consensus 375 ~~~~~ 379 (674)
T PRK01172 375 AASPA 379 (674)
T ss_pred ecCcc
Confidence 76543
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.7e-41 Score=361.52 Aligned_cols=320 Identities=22% Similarity=0.282 Sum_probs=237.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~al~~l~~~------~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
..+.+.+...-..+||++|++|++.+..+ .+.|++|+||||||++|+++++..+. +|.+++|++||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEecc
Confidence 34555554433347999999999999876 36899999999999999999887654 37789999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH---H-hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 204 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
++|+.|+++.+++++... ++.+..++|+....+.... + .+.++|+||||+.+.+ ...+.++++|||||+|
T Consensus 320 ~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 320 EILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 999999999999999765 5889999999886544332 2 3469999999987742 3457889999999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (565)
++.. ..+..+.......++++|||||......+......+...+ .........+..... .......+++.
T Consensus 394 rfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i--~~~p~~r~~i~~~~~---~~~~~~~~~~~ 463 (681)
T PRK10917 394 RFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVI--DELPPGRKPITTVVI---PDSRRDEVYER 463 (681)
T ss_pred hhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEE--ecCCCCCCCcEEEEe---CcccHHHHHHH
Confidence 8742 2233344444467899999999765544433211121122 111111112222222 22333445555
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchh--------hHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEE
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (565)
+.+.... +.+++|||+.++ .++.+++.|.+. ++.+..+||+|++.+|+.++++|++|+++|||
T Consensus 464 i~~~~~~-------g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 536 (681)
T PRK10917 464 IREEIAK-------GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILV 536 (681)
T ss_pred HHHHHHc-------CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 5554322 225999999654 456677777765 57899999999999999999999999999999
Q ss_pred eccccccCCCccCccEEEEcCCCC-CccchhhhhcccccCCCceeEEEEecc
Q 008443 430 ATDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 430 ~T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
||+++++|+|+|++++||+++.|. ....+.|++||+||.|..|.|++++..
T Consensus 537 aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 537 ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999999999999999999999986 577889999999999999999999963
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.1e-40 Score=357.83 Aligned_cols=317 Identities=22% Similarity=0.282 Sum_probs=233.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCC------CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 133 MKDIEFHEYTRPTSIQAQAMPVALSGR------DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~al~~l~~~~------~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
.+.+...+| +||+.|++|++.+..+. +.|++|+||||||++|+++++..+. +|.+++|++||++|
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~~L 296 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTEIL 296 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHHHH
Confidence 344566777 79999999999998652 5799999999999999888887654 37789999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH----HhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+.|+++.+++++... ++.+..++|+....+.... ..+.++|+|+|++.+.+ ...+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 999999999998765 6889999999876653322 23568999999987753 3567889999999999864
Q ss_pred hCCCHHHHHHHHHhCC--CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHH
Q 008443 283 DMGFEPQIREVMQNLP--DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (565)
Q Consensus 283 ~~~~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 360 (565)
.. ....+..... ...++++|||||......+......+...+ .........+.... ... .....++..+
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i--~~~p~~r~~i~~~~--~~~-~~~~~~~~~i 441 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSII--DELPPGRKPITTVL--IKH-DEKDIVYEFI 441 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeee--ccCCCCCCceEEEE--eCc-chHHHHHHHH
Confidence 22 1222333332 256799999998665443322111111111 11111111222211 122 2224455555
Q ss_pred HHHHHhhhccCCCCCeEEEEEcchh--------hHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEe
Q 008443 361 VEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lvF~~~~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
.+....+ .+++|||+..+ .++.+++.|.+. ++.+..+||+|++.+|..++++|++|+++||||
T Consensus 442 ~~~l~~g-------~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 442 EEEIAKG-------RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred HHHHHhC-------CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 4443222 24999998763 456677777653 678999999999999999999999999999999
Q ss_pred ccccccCCCccCccEEEEcCCCC-CccchhhhhcccccCCCceeEEEEecc
Q 008443 431 TDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
|+++++|||+|++++||+++.|. +...|.|++||+||.|+.|.|++++..
T Consensus 515 T~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 515 TTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred CceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999999999999999986 677899999999999999999999943
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.9e-41 Score=352.83 Aligned_cols=340 Identities=24% Similarity=0.316 Sum_probs=265.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
|++.+.+.+... |..||+.|.+|++.+.+|+++||+||||||||+++.+|++..+++........+-.+|||.|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 778888888877 9999999999999999999999999999999999999999999987422233567899999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC--CCCCCceEEEecchhhhhhCC
Q 008443 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+++...+..+.... ++.+...+|++...+..+...+.+||+++||++|.-++.... -.+.++++|||||.|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999998865 688899999999999888889999999999999976665432 357889999999999987654
Q ss_pred CHHH----HHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCC--CeEEEecCcCCCCCceEEEEEEecc----chHHHH
Q 008443 286 FEPQ----IREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTD--PVQVKVGKVSSPTANVIQILEKVSE----NEKVDR 355 (565)
Q Consensus 286 ~~~~----~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 355 (565)
.+.+ +.++....+ ++|.+|+|||..+. ...++-+... +..+...... ...++.-. ..... +.-...
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~-k~~~i~v~-~p~~~~~~~~~~~~~ 241 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA-KKLEIKVI-SPVEDLIYDEELWAA 241 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC-CcceEEEE-ecCCccccccchhHH
Confidence 3333 344444444 89999999998743 3334333333 2222221111 11111111 11111 122233
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC-CceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
++..+.+...... .+|||+||+..+|.++..|++.+ ..+..+||.++.+.|..+.++|++|+++++|||..+
T Consensus 242 ~~~~i~~~v~~~~-------ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSL 314 (814)
T COG1201 242 LYERIAELVKKHR-------TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314 (814)
T ss_pred HHHHHHHHHhhcC-------cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccch
Confidence 4444444333222 39999999999999999999987 899999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCCCccchhhhhccccc-CCCceeEEEEecc
Q 008443 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGR-GGSMGQATSFYTD 480 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR-~g~~g~~~~~~~~ 480 (565)
+.|||+.+++.||++..|.++..++||+||+|+ .|....++++..+
T Consensus 315 ELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 315 ELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999996 4444566666555
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-41 Score=345.34 Aligned_cols=327 Identities=24% Similarity=0.356 Sum_probs=256.9
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+|+..+++-|.++|..++.|+++++..|||.||++||.+|++-. .+.+|||.|..+|.+...+.++..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999998754 235899999999999888888775
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC--CHHHHH
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~ 291 (565)
++....+....+.+++...+ .+..++++-+|++|..-.....+.--.+.+++|||||++++|| |++.|.
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 56777777776666554443 3568999999999954433322334568899999999999997 888887
Q ss_pred HHH---HhCCCCCeEEEEeccccHHHHHHHHhhcCCCe-EEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhh
Q 008443 292 EVM---QNLPDKHQTLLFSATMPVEIEALAQGYLTDPV-QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 292 ~i~---~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 367 (565)
.+- ..++ +.+++.+|||.+..+...+...+.-.. .+...... .+++........ ... ..+. .+.+
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd--RpNi~~~v~~~~-~~~-~q~~-fi~~----- 224 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD--RPNLALKVVEKG-EPS-DQLA-FLAT----- 224 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC--Cchhhhhhhhcc-cHH-HHHH-HHHh-----
Confidence 764 4454 677999999999888776665544322 12222222 122221111111 111 1111 2221
Q ss_pred hccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEE
Q 008443 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 447 (565)
Q Consensus 368 ~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi 447 (565)
........+||||.|+..++.+++.|...|+.+..+|++|+.++|+.+.++|..++++|+|||.+|++|||-|+|++||
T Consensus 225 -~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 225 -VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred -hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 1122334599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHH
Q 008443 448 NLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 492 (565)
Q Consensus 448 ~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~ 492 (565)
|||.|.|+..|.|-+|||||+|.+..|++++.+.|....+.+.+.
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999998877766544
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.3e-40 Score=350.85 Aligned_cols=316 Identities=18% Similarity=0.203 Sum_probs=238.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.||. |+|+|+++++.++.|+ ++++.+|||||||.++++.++.. ... .....+++|++|+++|+.|+++.+.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----AKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----ccccceEEEeCchHHHHHHHHHHHHHH
Confidence 4776 9999999999999998 57778999999998664333321 111 112345666889999999999999998
Q ss_pred HhcCC----------------------CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC----------
Q 008443 218 SRSLD----------------------SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT---------- 265 (565)
Q Consensus 218 ~~~~~----------------------~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~---------- 265 (565)
....+ .+.+..++||.....+...+..+++|||+|++.+ .+..+
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKS 161 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCcccccccccccc
Confidence 86542 3788999999999888888888899999996544 33322
Q ss_pred ------CCCCceEEEecchhhhhhCCCHHHHHHHHHhC--CC---CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcC
Q 008443 266 ------SLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD---KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVS 334 (565)
Q Consensus 266 ------~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~--~~---~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (565)
.+.++.+||+|||| ++.+|...+..|+... ++ +.|+++||||++.++......++.++..+.+....
T Consensus 162 ~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~ 239 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR 239 (844)
T ss_pred ccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccc
Confidence 26789999999999 5788999999999964 33 26899999999988777777776666555544333
Q ss_pred CCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHH
Q 008443 335 SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 414 (565)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 414 (565)
.....+.+. .......+...++..+..... ....++|||||++..|+.+++.|.+.++ ..+||+|++.+|.
T Consensus 240 l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~------e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 240 LAAKKIVKL-VPPSDEKFLSTMVKELNLLMK------DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred ccccceEEE-EecChHHHHHHHHHHHHHHHh------hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 333344443 233333344444444332221 1223699999999999999999998887 8999999999999
Q ss_pred -----HHHHhhhc----CC-------eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCce-eEEEE
Q 008443 415 -----SALRDFRN----GS-------TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMG-QATSF 477 (565)
Q Consensus 415 -----~~~~~f~~----g~-------~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g-~~~~~ 477 (565)
.++++|++ |+ ..|||||+++++||||+. ++||+...| ...|+||+||+||.|+.| ..+++
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~v 387 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAV 387 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEE
Confidence 78999987 44 689999999999999986 888887766 689999999999998853 33444
Q ss_pred e
Q 008443 478 Y 478 (565)
Q Consensus 478 ~ 478 (565)
+
T Consensus 388 v 388 (844)
T TIGR02621 388 V 388 (844)
T ss_pred E
Confidence 4
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-40 Score=318.33 Aligned_cols=324 Identities=25% Similarity=0.297 Sum_probs=236.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+++.||.......+.+ +.|++.|||.|||.++++-+...+... ++++||++||+-|+.|.++.|+++++-
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~i- 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTGI- 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhCC-
Confidence 47899999998888765 899999999999999977665555543 448999999999999999999999865
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDK 300 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~~ 300 (565)
+.-.+..++|.....+....+ ...+|+|+|||.+.+.+..+..+++++.+||+||||+..... |.......+. ...+
T Consensus 85 p~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~-~~k~ 162 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR-SAKN 162 (542)
T ss_pred ChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-hccC
Confidence 356788889988877665554 458999999999999999999999999999999999987542 3333333333 3446
Q ss_pred CeEEEEeccccHHHHHH---HHhhcCCCeEEEecCcCCCCC-----ceEEE-----------------------------
Q 008443 301 HQTLLFSATMPVEIEAL---AQGYLTDPVQVKVGKVSSPTA-----NVIQI----------------------------- 343 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------------------------- 343 (565)
+.+|++||||..+.+.+ ++.+....+.+.........+ .+...
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67999999995443322 222211111111000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 008443 344 -------------------------------------------------------------------------------- 343 (565)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (565)
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence
Q ss_pred ------------------EEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceE-Ee
Q 008443 344 ------------------LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-AL 404 (565)
Q Consensus 344 ------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~-~~ 404 (565)
....-.+.|...+.+.+.+... .....++|||++.+..|+.+.++|.+.+..+. .+
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~-----k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rF 397 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLE-----KNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRF 397 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHh-----cCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEE
Confidence 0000011112222222222211 12235799999999999999999999987764 22
Q ss_pred --------cCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEE
Q 008443 405 --------HGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 405 --------~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~ 476 (565)
..||++.++.++++.|++|+++|||||++.++|+|||++++||+|++..|...++||.||+||. +.|.+++
T Consensus 398 iGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~v 476 (542)
T COG1111 398 IGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVV 476 (542)
T ss_pred eeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999998 7799999
Q ss_pred Eecccc
Q 008443 477 FYTDRD 482 (565)
Q Consensus 477 ~~~~~d 482 (565)
++....
T Consensus 477 Lvt~gt 482 (542)
T COG1111 477 LVTEGT 482 (542)
T ss_pred EEecCc
Confidence 998773
No 53
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=325.15 Aligned_cols=343 Identities=25% Similarity=0.324 Sum_probs=269.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~-l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
..+++.+++.+.+-++..|+.++.|+|..|+++ +++|+|.+|+++|+||||++..++-+..++. .|++.||+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 456788999999999999999999999999987 6699999999999999999999998888887 48889999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH----HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
||..+|++|-++.|+.....+ ++.+.+-.|....+.... ....++||+|+|++-+-.++..+ ..+.+++.||||
T Consensus 268 vPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 999999999999999988765 677877777655443321 12346899999999996666655 778999999999
Q ss_pred chhhhhhCCCHHHHHHH---HHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEec-cchH
Q 008443 277 EADRMLDMGFEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEK 352 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 352 (565)
|+|.+-+...++.+.-+ ++++-+..|+|++|||..+..+ +++.+--..+.+. ..+ ..+........ ..+|
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~lV~y~----~RP-VplErHlvf~~~e~eK 419 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLYD----ERP-VPLERHLVFARNESEK 419 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCeeEeec----CCC-CChhHeeeeecCchHH
Confidence 99998775545444433 3444568999999999976644 5554433333221 112 22222233333 4445
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
. .++..+.+............+++|||++|+..|.+++.+|...|+++..+|++++..+|+.+...|.++++.++|+|.
T Consensus 420 ~-~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 420 W-DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred H-HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 4 455555555555556666677899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCccEEEE----cCCC-CCccchhhhhcccccCC--CceeEEEEeccc
Q 008443 433 VASRGLDVMGVAHVVN----LDLP-KTVEDYVHRIGRTGRGG--SMGQATSFYTDR 481 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~----~~~~-~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~ 481 (565)
+++.|+|+|. +.||+ ++.. .|+.+|.||+|||||.+ ..|.|++++.+.
T Consensus 499 AL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999995 55543 3333 48999999999999976 458998888654
No 54
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.9e-39 Score=348.65 Aligned_cols=382 Identities=20% Similarity=0.239 Sum_probs=260.6
Q ss_pred CCCCHHHHHHHHHHhcC---CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~---~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..|++.|+++++.+..+ +++++.|+||+|||.+|+.++.. .+. .|+++|||+|+++|+.|+.+.|++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~-~l~-------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAE-VLA-------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHH-HHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 67999999999999999665444 444 26789999999999999999999877
Q ss_pred hcCCCceEEEEECCCcHHHH----HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC---CHHHHH
Q 008443 219 RSLDSFKTAIVVGGTNIAEQ----RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG---FEPQIR 291 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~---~~~~~~ 291 (565)
+ ..+..++|+....+. .....+..+|+|+|++.++ .++.++++|||||+|...... .....+
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 3 467888888766543 3334567899999999886 678899999999999765332 111112
Q ss_pred --HHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCc--CCCCCceEEEEEEeccc-------hHHHHHHHHH
Q 008443 292 --EVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKV--SSPTANVIQILEKVSEN-------EKVDRLLALL 360 (565)
Q Consensus 292 --~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~l~~~l 360 (565)
.++.....+.+++++||||+.+....+..... ..+..... ....+.+.. ...... .-...+++.+
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~~~~~~g~~--~~~~l~~r~~~~~~p~v~~--id~~~~~~~~~~~~ls~~l~~~i 359 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESLANAQQGRY--RLLRLTKRAGGARLPEVEI--IDMRELLRGENGSFLSPPLLEAI 359 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHHHHHhccce--eEEEeccccccCCCCeEEE--EechhhhhhcccCCCCHHHHHHH
Confidence 23334456788999999999777665543211 12222111 111111111 111110 0113445555
Q ss_pred HHHHHhhhccCCCCCeEEEEEcchhh------------------------------------------------------
Q 008443 361 VEEAFLAEKSCHPFPLTIVFVERKTR------------------------------------------------------ 386 (565)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lvF~~~~~~------------------------------------------------------ 386 (565)
.+....+. ++|||+|++++
T Consensus 360 ~~~l~~g~-------qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l 432 (679)
T PRK05580 360 KQRLERGE-------QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDL 432 (679)
T ss_pred HHHHHcCC-------eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCee
Confidence 55443332 48888876443
Q ss_pred ------HHHHHHHHHHC--CCceEEecCCCC--hhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcC--CCCC
Q 008443 387 ------CDEVSEALVAE--GLHAVALHGGRN--QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD--LPKT 454 (565)
Q Consensus 387 ------a~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~--~~~s 454 (565)
++.+++.|.+. +.++..+|+++. .++++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+| .+.+
T Consensus 433 ~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 433 VPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred EEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 26777888776 778999999986 46789999999999999999999999999999999996554 4444
Q ss_pred c----------cchhhhhcccccCCCceeEEEEeccccHHHHHHH---------HHHHhhhccCCcchhhhhhhH-----
Q 008443 455 V----------EDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFATGKVA----- 510 (565)
Q Consensus 455 ~----------~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~----- 510 (565)
. ..|+|++||+||.++.|.++++....+...+..+ ...+..++....++|......
T Consensus 513 ~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~ 592 (679)
T PRK05580 513 SPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAK 592 (679)
T ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecC
Confidence 3 4579999999999999999999988776655544 344566666666666533211
Q ss_pred ---HHHHHHHHHHh-cCcccccccccccCCC----ccchhHHHHHHHhCch
Q 008443 511 ---RRKEREAAAAQ-KGATVATSKLSMMGPS----VNIEDKYRFMIAASNM 553 (565)
Q Consensus 511 ---~~~~~~~~~~~-~~~~~~~~~~~~~g~~----~~~~~~yr~~~~~~~~ 553 (565)
...+....... ........++.++||. +|++|+|||||+.+-.
T Consensus 593 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~~ 643 (679)
T PRK05580 593 DEEKAEKFAQQLAALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKSP 643 (679)
T ss_pred CHHHHHHHHHHHHHHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEeC
Confidence 11111111111 1000001245789997 8999999999998853
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1e-38 Score=357.09 Aligned_cols=311 Identities=20% Similarity=0.233 Sum_probs=223.1
Q ss_pred EEccCCCchHHHHHHHHHHHHHhcCCC-----CCCCCCeEEEEcCchhhHHHHHHHHHHHHh-----------cCCCceE
Q 008443 163 GCAETGSGKTAAFTIPMIQHCVAQTPV-----GRGDGPLALVLAPTRELAQQIEKEVKALSR-----------SLDSFKT 226 (565)
Q Consensus 163 v~a~TGsGKT~~~~l~~~~~~~~~~~~-----~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~-----------~~~~~~~ 226 (565)
|++|||||||++|.++++..++.+... ...++.++|||+|+++|+.|+.+.++..+. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998865311 112467899999999999999998875322 1135789
Q ss_pred EEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-CCCCCCceEEEecchhhhhhCCCH----HHHHHHHHhCCCCC
Q 008443 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFE----PQIREVMQNLPDKH 301 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~iIiDE~H~~~~~~~~----~~~~~i~~~~~~~~ 301 (565)
...+|+....+....+.+.++|||+||++|..++... ...++++++|||||+|.+.+..++ ..+.++....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999998887777778999999999998876543 346889999999999999865433 34566666666778
Q ss_pred eEEEEeccccHHHHHHHHhhcC-CCeEEEecCcCCCCCceEEEEEEeccchH----------------HHHHHHHHHHHH
Q 008443 302 QTLLFSATMPVEIEALAQGYLT-DPVQVKVGKVSSPTANVIQILEKVSENEK----------------VDRLLALLVEEA 364 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~l~~~~ 364 (565)
|+|++|||+.+. +.+...+.. .+..+.. ........+. .........+ ...+...+....
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999863 444443322 2333322 2111112222 1111111000 001111111111
Q ss_pred HhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC---------------------------------CceEEecCCCChh
Q 008443 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---------------------------------LHAVALHGGRNQS 411 (565)
Q Consensus 365 ~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~ 411 (565)
.... ....++|||||++..|+.++..|++.. ..+..+||+++++
T Consensus 238 l~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 238 LDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 1100 112359999999999999999997641 1256899999999
Q ss_pred hHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCC-CceeEEEEec
Q 008443 412 DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG-SMGQATSFYT 479 (565)
Q Consensus 412 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g-~~g~~~~~~~ 479 (565)
+|..+++.|++|++++||||+.++.||||++|++||+++.|.+...|+||+||+||.. ..+.++++..
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999962 2344454333
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.3e-39 Score=337.93 Aligned_cols=310 Identities=16% Similarity=0.155 Sum_probs=220.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
...|+++|.+|++.++.+++.++++|||+|||++++. +...++.. ...++|||||+++|+.|+.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999998743 33333332 2347999999999999999999987643
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
. ......+.+|... ..+.+|+|+|++++.+... ..++++++||+||||++... .+..++..+++.
T Consensus 185 ~-~~~~~~i~~g~~~-------~~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~ 249 (501)
T PHA02558 185 P-REAMHKIYSGTAK-------DTDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNC 249 (501)
T ss_pred c-ccceeEEecCccc-------CCCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhcc
Confidence 2 2334445555322 1357899999999975432 24678999999999998743 457777777666
Q ss_pred CeEEEEeccccHHHHHH--HHhhcCCCeEEEecCcC------CCCCceEEEEEE--------------------e-ccch
Q 008443 301 HQTLLFSATMPVEIEAL--AQGYLTDPVQVKVGKVS------SPTANVIQILEK--------------------V-SENE 351 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------------------~-~~~~ 351 (565)
.+++++||||....... ...++++ ....+.... .....+...... . ....
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 78999999996532211 1112222 111111000 000000000000 0 0111
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEec
Q 008443 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 ~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
+...+...+.. .. ....+++|||+++++++.+++.|++.+.++..+||+++.++|..+++.|++|+..|||||
T Consensus 329 Rn~~I~~~~~~-~~------~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 329 RNKWIANLALK-LA------KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHHHHHHHHHH-HH------hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 11111111111 11 122358999999999999999999999999999999999999999999999999999998
Q ss_pred -cccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEecc
Q 008443 432 -DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 432 -~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
+++++|+|+|++++||+++++.|...|+||+||++|.+..+..+++++-
T Consensus 402 ~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~ 451 (501)
T PHA02558 402 YGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDI 451 (501)
T ss_pred cceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEe
Confidence 8999999999999999999999999999999999998876655555543
No 57
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-39 Score=336.69 Aligned_cols=364 Identities=21% Similarity=0.249 Sum_probs=244.4
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH----
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE---- 237 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 237 (565)
|+.|+||+|||++| +.++..++.. |+++|||+|+++|+.|+.+.|++.++ ..+..++++....+
T Consensus 1 LL~g~TGsGKT~v~-l~~i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVY-LQAIEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHH
Confidence 57899999999999 5556666653 77899999999999999999998874 35667777766544
Q ss_pred HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-----CHHHHHHHHHhCCCCCeEEEEeccccH
Q 008443 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 238 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-----~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
|.....+..+|||||++.++ .++.++++|||||+|....++ |...-..++.....+.++|++||||+.
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 33444567899999999886 678899999999999876332 111111233333457789999999998
Q ss_pred HHHHHHHhhcCCCeEEEecC--cCCCCCceEEEEEEeccch----HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhh
Q 008443 313 EIEALAQGYLTDPVQVKVGK--VSSPTANVIQILEKVSENE----KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR 386 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~ 386 (565)
+....+.... ...+.... .....+.+.. ....... -...+++.+.+....+. ++|||+|++..
T Consensus 142 es~~~~~~g~--~~~~~l~~r~~~~~~p~v~v--id~~~~~~~~~ls~~l~~~i~~~l~~g~-------qvLvflnrrGy 210 (505)
T TIGR00595 142 ESYHNAKQKA--YRLLVLTRRVSGRKPPEVKL--IDMRKEPRQSFLSPELITAIEQTLAAGE-------QSILFLNRRGY 210 (505)
T ss_pred HHHHHHhcCC--eEEeechhhhcCCCCCeEEE--EecccccccCCccHHHHHHHHHHHHcCC-------cEEEEEeCCcC
Confidence 7666554321 11111111 1111111111 1111111 12345555555544333 49999888775
Q ss_pred H------------------------------------------------------------HHHHHHHHHC--CCceEEe
Q 008443 387 C------------------------------------------------------------DEVSEALVAE--GLHAVAL 404 (565)
Q Consensus 387 a------------------------------------------------------------~~l~~~l~~~--~~~~~~~ 404 (565)
+ +.+.+.|.+. +.++..+
T Consensus 211 a~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~ 290 (505)
T TIGR00595 211 SKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARI 290 (505)
T ss_pred CCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEE
Confidence 2 7778888776 6789999
Q ss_pred cCCCChhhH--HHHHHhhhcCCeeEEEeccccccCCCccCccEEEE--cCCCCC----------ccchhhhhcccccCCC
Q 008443 405 HGGRNQSDR--ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--LDLPKT----------VEDYVHRIGRTGRGGS 470 (565)
Q Consensus 405 ~~~~~~~~r--~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~--~~~~~s----------~~~~~Q~~GRagR~g~ 470 (565)
|++++...+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+. .|...+ ...|+|++||+||.++
T Consensus 291 d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~ 370 (505)
T TIGR00595 291 DSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED 370 (505)
T ss_pred ecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC
Confidence 999887766 89999999999999999999999999999999964 443333 3457999999999999
Q ss_pred ceeEEEEeccccHHHHHHH---------HHHHhhhccCCcchhhhhhhH--------HHHHHHHHHHhcCcccccccccc
Q 008443 471 MGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFATGKVA--------RRKEREAAAAQKGATVATSKLSM 533 (565)
Q Consensus 471 ~g~~~~~~~~~d~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 533 (565)
.|.+++++...+...+..+ ...+..++....++|...... ...+........-......++.+
T Consensus 371 ~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 450 (505)
T TIGR00595 371 PGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEV 450 (505)
T ss_pred CCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcEE
Confidence 9999998877766554443 345556666666665433211 11111111111000111224678
Q ss_pred cCCC----ccchhHHHHHHHhCchhh
Q 008443 534 MGPS----VNIEDKYRFMIAASNMKR 555 (565)
Q Consensus 534 ~g~~----~~~~~~yr~~~~~~~~~~ 555 (565)
+||. +|++|+|||||+.+-..+
T Consensus 451 lgP~~~~~~k~~~~~r~~~l~k~~~~ 476 (505)
T TIGR00595 451 LGPSPAPIAKIAGRYRYQILLKSKSF 476 (505)
T ss_pred eCCccccchhhcCeeEEEEEEEcCCH
Confidence 9996 899999999999887543
No 58
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.4e-39 Score=335.41 Aligned_cols=392 Identities=20% Similarity=0.259 Sum_probs=287.1
Q ss_pred CCCCHHHHHHHHHHhcC----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~----~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..+++.|+.|++.+... ...|+.|.||||||.+| +.++...+.+ |+.+|+|||.++|..|+.++|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 36789999999999755 46999999999999999 7788888874 889999999999999999999999
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-----CCHHHHHH
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-----GFEPQIRE 292 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-----~~~~~~~~ 292 (565)
|+....+.++.+..+.....|.+...+...|||||...++ .+++++++|||||.|..... -|...-..
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 9865566777778888888999999999999999999999 99999999999999965422 14444445
Q ss_pred HHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCc--eEEEEEEeccch--HHHHHHHHHHHHHHhhh
Q 008443 293 VMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTAN--VIQILEKVSENE--KVDRLLALLVEEAFLAE 368 (565)
Q Consensus 293 i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~ 368 (565)
++..-..++++|+.||||+.+....+.........+.........+. +.+........+ -...+++.+.+....++
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 55555668889999999998877766443222222211111111222 222211111111 23567777777665555
Q ss_pred ccCCCCCeEEEEEcchhhH------------------------------------------------------------H
Q 008443 369 KSCHPFPLTIVFVERKTRC------------------------------------------------------------D 388 (565)
Q Consensus 369 ~~~~~~~~~lvF~~~~~~a------------------------------------------------------------~ 388 (565)
+ +|+|.|++.++ +
T Consensus 422 Q-------~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gte 494 (730)
T COG1198 422 Q-------VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTE 494 (730)
T ss_pred e-------EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHH
Confidence 4 99999998876 6
Q ss_pred HHHHHHHHC--CCceEEecCCCChh--hHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC--CC--------
Q 008443 389 EVSEALVAE--GLHAVALHGGRNQS--DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP--KT-------- 454 (565)
Q Consensus 389 ~l~~~l~~~--~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~--~s-------- 454 (565)
++++.|... +.+++.++++.+.. .-+..++.|.+|+.+|||+|+|+++|+|+|++++|..+|.. ..
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~E 574 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHH
Confidence 677777665 56788888877653 45788999999999999999999999999999998555443 33
Q ss_pred --ccchhhhhcccccCCCceeEEEEeccccHHHHHHH---------HHHHhhhccCCcchhhhhhh--------HHHHHH
Q 008443 455 --VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFATGKV--------ARRKER 515 (565)
Q Consensus 455 --~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l---------~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 515 (565)
...+.|.+|||||.+.+|.+++++...|++.+..+ +.++..++...+++|..... ....+.
T Consensus 575 r~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~ 654 (730)
T COG1198 575 RTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIASAKNEEKALEF 654 (730)
T ss_pred HHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeEecCCCHHHHHHH
Confidence 34459999999999999999999999998887765 45566666666666654422 111221
Q ss_pred HHHHHhcCcccccccccccCCC----ccchhHHHHHHHhCchhh
Q 008443 516 EAAAAQKGATVATSKLSMMGPS----VNIEDKYRFMIAASNMKR 555 (565)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~g~~----~~~~~~yr~~~~~~~~~~ 555 (565)
.......-.......+.++||+ .+++++|||||+.+-..+
T Consensus 655 ~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~~~~ 698 (730)
T COG1198 655 ARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSR 698 (730)
T ss_pred HHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEecCcH
Confidence 1111110011222347899997 999999999999886443
No 59
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=288.21 Aligned_cols=320 Identities=33% Similarity=0.542 Sum_probs=272.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
..|.++-|.|++++++...||..|..+|.+++|...-|-++|..|..|.|||.+|.+..++.+--- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457788899999999999999999999999999999999999999999999999977776654321 134568999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
|+|++|+-|+.+++.++.+..+++++..++||...+.....+.+-++|+|+||++++.+.....+.+++++..|+|||+.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999999998888899999999999998887778878889999999999999999999999999999999998
Q ss_pred hhhC-CCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcC-CCCCceEEEEEEeccchHHHHHHH
Q 008443 281 MLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 281 ~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 358 (565)
++++ +....++.|.+..+...|+..+|||++.++......++.+|..+.+.... .....+.+.+..+...+|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 8753 46777889999999999999999999999999999999999988877554 333456677777777777777777
Q ss_pred HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCC
Q 008443 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
++.-.... .++||+.+..... | .-+ +|+|+++++|+
T Consensus 277 LLd~LeFN---------QVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgm 312 (387)
T KOG0329|consen 277 LLDVLEFN---------QVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGM 312 (387)
T ss_pred hhhhhhhc---------ceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhcccc
Confidence 76544322 4999998876500 2 112 88999999999
Q ss_pred CccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHH
Q 008443 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQI 489 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-d~~~~~~l 489 (565)
||..++.|++||.|.+...|+||+|||||.|..|.+++|+... |...+..+
T Consensus 313 diervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~v 364 (387)
T KOG0329|consen 313 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPV 364 (387)
T ss_pred CcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchh
Confidence 9999999999999999999999999999999999999999865 34444433
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.1e-37 Score=344.75 Aligned_cols=283 Identities=22% Similarity=0.305 Sum_probs=216.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|+ +|+++|+.+++.++.|++++++||||+|||..+ ++++..+.. +++++|||+||++|+.|+.+.++.+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 366 899999999999999999999999999999744 555444332 37889999999999999999999998
Q ss_pred hcCCCceEEEEECCCc-----HHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh---------
Q 008443 219 RSLDSFKTAIVVGGTN-----IAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--------- 283 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~-----~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~--------- 283 (565)
... ++.+..+.|+.. ..+....+. ++++|+|+||+.|.+++. .+....+++|||||||++++
T Consensus 148 ~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 148 EKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 764 466666666543 122222333 569999999999998776 35566799999999999985
Q ss_pred --CCCH-HHHHHHHHhCCC------------------------CCeEEEEeccccHH-HHHHHHhhcCCCeEEEecCcCC
Q 008443 284 --MGFE-PQIREVMQNLPD------------------------KHQTLLFSATMPVE-IEALAQGYLTDPVQVKVGKVSS 335 (565)
Q Consensus 284 --~~~~-~~~~~i~~~~~~------------------------~~~~l~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (565)
.||. ..+..++..++. ..|++++|||++.. +.. .++.....+.++....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF 301 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc
Confidence 5674 567777766653 67899999999753 332 2233444455555555
Q ss_pred CCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhh---HHHHHHHHHHCCCceEEecCCCChhh
Q 008443 336 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVALHGGRNQSD 412 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~---a~~l~~~l~~~~~~~~~~~~~~~~~~ 412 (565)
...++.+.+.... ++...+...+.... ..+||||+++.. |+.+++.|...|+.+..+||++
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l~----------~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---- 365 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRLG----------DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---- 365 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhcC----------CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----
Confidence 5566777666554 45555555543211 149999999777 9999999999999999999999
Q ss_pred HHHHHHhhhcCCeeEEEe----ccccccCCCccC-ccEEEEcCCCC
Q 008443 413 RESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLPK 453 (565)
Q Consensus 413 r~~~~~~f~~g~~~vLv~----T~~~~~Gidip~-v~~Vi~~~~~~ 453 (565)
...+++|++|+++|||| |+++++|||+|+ |++|||+|.|.
T Consensus 366 -~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 -ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred -HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 699999999999 89999999885
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.5e-38 Score=330.51 Aligned_cols=321 Identities=17% Similarity=0.185 Sum_probs=230.5
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchHHH---------HHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 146 SIQAQAMPVALSGRDLLGCAETGSGKTAA---------FTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 146 ~~Q~~al~~l~~~~~~lv~a~TGsGKT~~---------~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.+|+++++.+++++++|+.|+||+|||.+ |+++.+..+..-. ....++++++++||++|+.|+..++.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47999999999999999999999999987 3333443332110 012356899999999999999999987
Q ss_pred HHhc--CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHH
Q 008443 217 LSRS--LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (565)
Q Consensus 217 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~ 294 (565)
..+. ..+..+...+||..... ........+|+|+|++... ..+.++++|||||||.....+ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHH
Confidence 6643 23456778888876321 1122235789999976322 357789999999999876553 4445555
Q ss_pred HhCC-CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEecc---------chHHHHHHHHHHHHH
Q 008443 295 QNLP-DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSE---------NEKVDRLLALLVEEA 364 (565)
Q Consensus 295 ~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~ 364 (565)
.... ...|+++||||++.+...+ ..++.++..+.+... ....+.+.+..... ......+...+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 4432 2348999999998877766 578887777766432 12334443332110 011111222222111
Q ss_pred HhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhh-hcCCeeEEEeccccccCCCcc
Q 008443 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDF-RNGSTNILVATDVASRGLDVM 441 (565)
Q Consensus 365 ~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vLv~T~~~~~Gidip 441 (565)
....+.+||||+++.+++.+++.|.+. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|||||
T Consensus 392 ------~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp 463 (675)
T PHA02653 392 ------PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIR 463 (675)
T ss_pred ------cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccccc
Confidence 011236999999999999999999987 78999999999974 5677777 789999999999999999999
Q ss_pred CccEEEEcC---CCC---------CccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 008443 442 GVAHVVNLD---LPK---------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 442 ~v~~Vi~~~---~~~---------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~ 490 (565)
+|++||+++ .|. |...|+||+||+||. ++|.|+.+++..+...+.++.
T Consensus 464 ~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 464 NATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999999998 454 777899999999999 789999999988765555543
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-36 Score=329.61 Aligned_cols=312 Identities=19% Similarity=0.242 Sum_probs=234.0
Q ss_pred HHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEE
Q 008443 148 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (565)
Q Consensus 148 Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~ 227 (565)
-.+.+..+..++++++.|+||||||.++.+++++... .+++++++.|+++++.|+++++.+.++...+..++
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3456667777889999999999999999888877642 24579999999999999999997766543345566
Q ss_pred EEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh-hhhhCCCHHH-HHHHHHhCCCCCeEEE
Q 008443 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLL 305 (565)
Q Consensus 228 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~i~~~~~~~~~~l~ 305 (565)
+..++.. ......+|+|+|++.|.+.+.. ...+.++++|||||+| +..+.++.-. +..+...++++.|+|+
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 6555532 2334578999999999988876 3578899999999999 4666665433 3556666788899999
Q ss_pred EeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHH-HHHHHHHHHHhhhccCCCCCeEEEEEcch
Q 008443 306 FSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR-LLALLVEEAFLAEKSCHPFPLTIVFVERK 384 (565)
Q Consensus 306 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~lvF~~~~ 384 (565)
||||++... ...++.+...+...... ..+...+......++... +...+.... .. ..+.+||||+++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~~-----~~g~iLVFlpg~ 219 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHAL-AS-----ETGSILVFLPGQ 219 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHH-Hh-----cCCcEEEEECCH
Confidence 999998653 35566654444433221 123333333333333221 112222211 11 123599999999
Q ss_pred hhHHHHHHHHHH---CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCC-------
Q 008443 385 TRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKT------- 454 (565)
Q Consensus 385 ~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s------- 454 (565)
.+++.+++.|.+ .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+++.+..
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 4789999999999999999999999999999999999999999999999999998752
Q ss_pred -----------ccchhhhhcccccCCCceeEEEEeccccHHHHH
Q 008443 455 -----------VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 487 (565)
Q Consensus 455 -----------~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~ 487 (565)
...|.||.|||||. .+|.|+.+++..+...+.
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~ 342 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLP 342 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhh
Confidence 33489999999999 789999999987655433
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.4e-37 Score=348.35 Aligned_cols=330 Identities=18% Similarity=0.238 Sum_probs=247.9
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 131 SIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 131 ~l~~~l~~-~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
++.+.+++ .|+ +|+++|+++++.++.|++++++||||+|||++++++++.. .. +++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-~~-------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-AL-------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEECHHHHHHH
Confidence 44455554 798 7999999999999999999999999999999765544432 11 36789999999999999
Q ss_pred HHHHHHHHHhcCC-CceEEEEECCCcHHHHHHH---H-hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh-
Q 008443 210 IEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD- 283 (565)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~- 283 (565)
+.+.++.++.... ++.+..++|+....++... + .+.++|+|+||+.|.+.+... ...++++|||||||++++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccc
Confidence 9999999876542 4567778888877655322 2 346999999999998765532 226799999999999976
Q ss_pred ----------CCCHHHHHH----HHH----------------------hCCCCCe-EEEEeccccHHHHHHHHhhcCCCe
Q 008443 284 ----------MGFEPQIRE----VMQ----------------------NLPDKHQ-TLLFSATMPVEIEALAQGYLTDPV 326 (565)
Q Consensus 284 ----------~~~~~~~~~----i~~----------------------~~~~~~~-~l~~SAT~~~~~~~~~~~~~~~~~ 326 (565)
.||.+.+.. ++. .++...| ++++|||++.... ...++..+.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCe
Confidence 477776653 322 2334445 6779999985311 123445666
Q ss_pred EEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhh---HHHHHHHHHHCCCceEE
Q 008443 327 QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVA 403 (565)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~---a~~l~~~l~~~~~~~~~ 403 (565)
.+.++.......++.+.+.......+ ..+...+... + ..+||||+++.. |+.+++.|.+.|+++..
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g-------~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~ 362 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---G-------KGGLIFVPIDEGAEKAEEIEKYLLEDGFKIEL 362 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---C-------CCeEEEEeccccchHHHHHHHHHHHCCCeEEE
Confidence 67776665556677777665544433 3444444321 1 149999999875 58999999999999999
Q ss_pred ecCCCChhhHHHHHHhhhcCCeeEEEec----cccccCCCccC-ccEEEEcCCCC---Cccchhhhh-------------
Q 008443 404 LHGGRNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLPK---TVEDYVHRI------------- 462 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidip~-v~~Vi~~~~~~---s~~~~~Q~~------------- 462 (565)
+||+ |...+++|++|+++||||| ++++||||+|+ |++|||+|.|. +...|.|-.
T Consensus 363 ~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~ 437 (1638)
T PRK14701 363 VSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKI 437 (1638)
T ss_pred ecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHh
Confidence 9995 8899999999999999999 58999999999 99999999999 777776655
Q ss_pred cccccCCCceeEEEEeccccHHHHHHH
Q 008443 463 GRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 463 GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
||+||.|.++.++..+...+...++.+
T Consensus 438 ~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 438 EEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred hhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 999999998888765555555555443
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3e-37 Score=330.25 Aligned_cols=335 Identities=21% Similarity=0.273 Sum_probs=247.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 127 ~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~-~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
.+.+.+.+-++..++.++.+.|+.++..... ++|+||++|||+|||+++++.++..+.+. +.+++||||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 3667788888888888999999999987764 58999999999999999999988888763 677999999999
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC
Q 008443 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
|+.|.+++|+++ ... ++++...+|+..... ....+++|+|+||+++.....+....+..+++|||||+|.+.+..
T Consensus 88 La~Ek~~~~~~~-~~~-GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 88 LAEEKYEEFSRL-EEL-GIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHhhhH-Hhc-CCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999999943 333 799999999987544 223569999999999998888877788899999999999888775
Q ss_pred CHHHHHHHHHhC---CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCc--CCCCCceEEEEEEeccch------HHH
Q 008443 286 FEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKV--SSPTANVIQILEKVSENE------KVD 354 (565)
Q Consensus 286 ~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~ 354 (565)
.++.+..|.... ...+|++++|||+++.. .++...-.++........ ........ .+....... ...
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA~wL~a~~~~~~~rp~~l~~~v~~~~-~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVADWLNAKLVESDWRPVPLRRGVPYVG-AFLGADGKKKTWPLLIDN 240 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHHHHhCCcccccCCCCcccccCCccce-EEEEecCccccccccchH
Confidence 666666555443 34479999999998643 344433222221111111 11111111 112211111 223
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-------------------------------------
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------------------------------------- 397 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~------------------------------------- 397 (565)
..+..+...... ++++||||+++..+...++.+...
T Consensus 241 ~~~~~v~~~~~~-------~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v 313 (766)
T COG1204 241 LALELVLESLAE-------GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV 313 (766)
T ss_pred HHHHHHHHHHhc-------CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH
Confidence 334444443332 235999999999998888888730
Q ss_pred CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEE----EcC-----CCCCccchhhhhcccccC
Q 008443 398 GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLD-----LPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 398 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----~~~-----~~~s~~~~~Q~~GRagR~ 468 (565)
...++.+|++++.++|..+.+.|+.|.++|||||++++.|+|+|.-..|| .++ .+.+.-+++|++|||||.
T Consensus 314 ~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 314 LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred HhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 12467899999999999999999999999999999999999999655554 355 345788899999999998
Q ss_pred CC--ceeEEEEecccc
Q 008443 469 GS--MGQATSFYTDRD 482 (565)
Q Consensus 469 g~--~g~~~~~~~~~d 482 (565)
|- .|.++++.+..+
T Consensus 394 g~d~~G~~~i~~~~~~ 409 (766)
T COG1204 394 GYDDYGEAIILATSHD 409 (766)
T ss_pred CcCCCCcEEEEecCcc
Confidence 74 478888884443
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.1e-36 Score=328.01 Aligned_cols=308 Identities=20% Similarity=0.263 Sum_probs=231.0
Q ss_pred HHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEE
Q 008443 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 228 (565)
Q Consensus 149 ~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 228 (565)
.+.+..+.+++++++.|+||||||.+|.+++++... .+.++++++||++++.|+++.+...++...+..++.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 346667778889999999999999999887776421 134799999999999999999977665444567777
Q ss_pred EECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh-hhhCCC-HHHHHHHHHhCCCCCeEEEE
Q 008443 229 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGF-EPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 229 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~-~~~~~~-~~~~~~i~~~~~~~~~~l~~ 306 (565)
.+++... .....+|+|+|++.|.+++.. ...++++++|||||+|. ..+.++ ...+..++..++++.|+++|
T Consensus 83 ~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 83 RMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred EecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 7766432 224468999999999988775 45789999999999996 344332 22345566777888999999
Q ss_pred eccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHH-HHHHHHHHHHhhhccCCCCCeEEEEEcchh
Q 008443 307 SATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR-LLALLVEEAFLAEKSCHPFPLTIVFVERKT 385 (565)
Q Consensus 307 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~ 385 (565)
|||++.+ ....++.+...+..... ...+...+.......+... +...+...... ..+.+||||+++.
T Consensus 156 SATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~------~~g~iLVFlpg~~ 223 (812)
T PRK11664 156 SATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ------ESGSLLLFLPGVG 223 (812)
T ss_pred ecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh------CCCCEEEEcCCHH
Confidence 9999865 23456655544443322 1223333433333333321 11222222111 1246999999999
Q ss_pred hHHHHHHHHHH---CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCC---------
Q 008443 386 RCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK--------- 453 (565)
Q Consensus 386 ~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~--------- 453 (565)
+++.+++.|.. .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+++.+.
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999987 578899999999999999999999999999999999999999999999999987764
Q ss_pred ---------CccchhhhhcccccCCCceeEEEEeccccHH
Q 008443 454 ---------TVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 454 ---------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~ 484 (565)
|...|+||.||+||. .+|.|+.+++..+..
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 335799999999999 689999999977654
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.4e-35 Score=306.32 Aligned_cols=320 Identities=25% Similarity=0.238 Sum_probs=243.2
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|..+++.++.|+ |..+.||+|||++|++|++...+. |+.++||+|+++||.|.++.+..++...
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 478999999999999998 999999999999999999987553 7789999999999999999999999876
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC-------------------------CCCCCceEEEe
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN-------------------------TSLSRVSFVIL 275 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-------------------------~~~~~~~~iIi 275 (565)
++.+++++|+..... +....+++|+++|...| ++++..+. .....+.+.||
T Consensus 172 -Glsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred -CCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 799999999976543 33446799999999998 55554431 12355889999
Q ss_pred cchhhhh-hCC-----------------CHHHHHHHHHhCCC--------------------------------------
Q 008443 276 DEADRML-DMG-----------------FEPQIREVMQNLPD-------------------------------------- 299 (565)
Q Consensus 276 DE~H~~~-~~~-----------------~~~~~~~i~~~~~~-------------------------------------- 299 (565)
||+|.++ |+. +......+...+..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999542 100 00001111110000
Q ss_pred -------------------------------------------------------------------------------C
Q 008443 300 -------------------------------------------------------------------------------K 300 (565)
Q Consensus 300 -------------------------------------------------------------------------------~ 300 (565)
-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0
Q ss_pred CeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 008443 301 HQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (565)
Q Consensus 301 ~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF 380 (565)
.++.|||||.......+...|..++..+...... .....+.+...+..+|...+...+...... ..++|||
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~-------~~pvLIf 479 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQ-------GRPVLVG 479 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhc-------CCCEEEE
Confidence 0467899998877777877777776555443322 112233345556677887777777653321 1259999
Q ss_pred EcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCcc---Ccc-----EEEEcCCC
Q 008443 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLP 452 (565)
Q Consensus 381 ~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip---~v~-----~Vi~~~~~ 452 (565)
|+++..++.+++.|.+.|+++..+||++.. |+..+..|..+...|+|||+++++|+||+ +|. +||+++.|
T Consensus 480 t~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P 557 (656)
T PRK12898 480 TRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERH 557 (656)
T ss_pred eCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCC
Confidence 999999999999999999999999998654 45555556655667999999999999999 676 99999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 453 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
.+...|+|++||+||.|.+|.++.+++..|..+
T Consensus 558 ~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 558 DSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999999999999999999999999999877544
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.1e-35 Score=327.48 Aligned_cols=289 Identities=23% Similarity=0.357 Sum_probs=213.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHH
Q 008443 133 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~ 212 (565)
.+.+.......|+++|+.+++.++.|++++++||||+|||. |+++++..+.. .++++|||+||++|+.|+.+
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHH
Confidence 33344444458999999999999999999999999999997 54666655543 37889999999999999999
Q ss_pred HHHHHHhcCCCce---EEEEECCCcHHHHHH---HH-hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh--
Q 008443 213 EVKALSRSLDSFK---TAIVVGGTNIAEQRS---EL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-- 283 (565)
Q Consensus 213 ~~~~~~~~~~~~~---~~~~~g~~~~~~~~~---~~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~-- 283 (565)
.++.++... ++. ++.++|+....++.. .+ .++++|||+||+.|.+.+.. +.. ++++|||||||++++
T Consensus 140 ~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhcc
Confidence 999998654 232 345678877655422 22 34699999999999887664 222 899999999999987
Q ss_pred ---------CCCHHH-HHHHH----------------------HhCCCCCe--EEEEecc-ccHHHHHHHHhhcCCCeEE
Q 008443 284 ---------MGFEPQ-IREVM----------------------QNLPDKHQ--TLLFSAT-MPVEIEALAQGYLTDPVQV 328 (565)
Q Consensus 284 ---------~~~~~~-~~~i~----------------------~~~~~~~~--~l~~SAT-~~~~~~~~~~~~~~~~~~~ 328 (565)
.||... +..++ ..++...| ++++||| .+..... .++.+...+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 466543 33332 23334444 6678999 4544332 234455555
Q ss_pred EecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcch---hhHHHHHHHHHHCCCceEEec
Q 008443 329 KVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK---TRCDEVSEALVAEGLHAVALH 405 (565)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~---~~a~~l~~~l~~~~~~~~~~~ 405 (565)
.++.......++.+.+..... +...+...+... + ..+||||+++ +.|+++++.|.+.|+++..+|
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~-------~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lh 360 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---G-------TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYH 360 (1171)
T ss_pred EecCccccccceEEEEEeccc--HHHHHHHHHHHc---C-------CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEe
Confidence 665555555666666654332 233444444321 1 1499999999 999999999999999999999
Q ss_pred CCCChhhHHHHHHhhhcCCeeEEEe----ccccccCCCccC-ccEEEEcCCC
Q 008443 406 GGRNQSDRESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLP 452 (565)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~~Gidip~-v~~Vi~~~~~ 452 (565)
|+++ +.++++|++|+++|||| |+++++|||+|+ |++||++|.|
T Consensus 361 g~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 361 ATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred CCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 9986 37899999999999999 599999999999 8999998776
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.8e-35 Score=323.76 Aligned_cols=325 Identities=25% Similarity=0.316 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+++++|.+++..++.+ ++|+++|||+|||+++++.+...+ .. .++++|||+|+++|+.|+.+.++.++...
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l-~~------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERL-HK------KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHH-Hh------CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 47899999999988776 899999999999999977666655 32 36789999999999999999999987532
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
...+..++|+....+.. ....+++|+|+||+.+...+..+...+.++++|||||||++........+...+.......
T Consensus 86 -~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 86 -EEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred -CceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 34677788877765443 3345689999999999888887888889999999999999875432233333333333456
Q ss_pred eEEEEeccccHHH---HHHHHhhcCCCeEEEecCcCC-----CCCceEEEEEEe--------------------------
Q 008443 302 QTLLFSATMPVEI---EALAQGYLTDPVQVKVGKVSS-----PTANVIQILEKV-------------------------- 347 (565)
Q Consensus 302 ~~l~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------------------------- 347 (565)
+++++||||.... ......+....+.+....... ....+......+
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6999999995332 222222211111110000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008443 348 -------------------------------------------------------------------------------- 347 (565)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (565)
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence
Q ss_pred --------------------ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCC
Q 008443 348 --------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGG 407 (565)
Q Consensus 348 --------------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~ 407 (565)
....|...+.+.+.+.. ......++||||+++..|+.+.+.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~-----~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~ 398 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQL-----GKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ 398 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHH-----hcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcc
Confidence 00001111111111110 01345689999999999999999999999999999886
Q ss_pred --------CChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEec
Q 008443 408 --------RNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 408 --------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~ 479 (565)
+++.+|..++++|++|++++||+|+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++++.
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~ 477 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIA 477 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEe
Confidence 888999999999999999999999999999999999999999999999999999999999876 78888877
Q ss_pred ccc
Q 008443 480 DRD 482 (565)
Q Consensus 480 ~~d 482 (565)
...
T Consensus 478 ~~t 480 (773)
T PRK13766 478 KGT 480 (773)
T ss_pred CCC
Confidence 553
No 69
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8.3e-36 Score=306.76 Aligned_cols=339 Identities=26% Similarity=0.341 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
+.++....+.--....++.||.+.+...+ |+++||++|||+|||++++.-++.++...+ ..+++|++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 44555555544555689999999999998 999999999999999999777766655442 46799999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCC-CCCceEEEecchhhhhhCC-
Q 008443 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS-LSRVSFVILDEADRMLDMG- 285 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~-~~~~~~iIiDE~H~~~~~~- 285 (565)
.|....+..++.. ..+....||+........+-...+|+|+||+.|.+.+..+... +..|.+|||||||+.....
T Consensus 120 ~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 120 NQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 9999888877643 3444455554433333345566899999999999888876543 5889999999999986543
Q ss_pred CHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHh---hcCC----------------------CeEE------------
Q 008443 286 FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQG---YLTD----------------------PVQV------------ 328 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~---~~~~----------------------~~~~------------ 328 (565)
|...++..+.......|+|++||||.......... +.-. +..+
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 55555566666555569999999996443221110 0000 0000
Q ss_pred ----------------EecCcC------------CCCCceE--EE--------------------EE-------------
Q 008443 329 ----------------KVGKVS------------SPTANVI--QI--------------------LE------------- 345 (565)
Q Consensus 329 ----------------~~~~~~------------~~~~~~~--~~--------------------~~------------- 345 (565)
...... ....+.. +. +.
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 000000 0000000 00 00
Q ss_pred Ee---------------------------------ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHH
Q 008443 346 KV---------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (565)
Q Consensus 346 ~~---------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~ 392 (565)
.. ....|...+.+.+.+... ..+..++||||.+++.|+.|..
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~-----~~~dsR~IIFve~R~sa~~l~~ 431 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE-----QNPDSRTIIFVETRESALALKK 431 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh-----cCCCccEEEEEehHHHHHHHHH
Confidence 00 011222222222222221 3445689999999999999999
Q ss_pred HHHHC---CCceEEec--------CCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhh
Q 008443 393 ALVAE---GLHAVALH--------GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHR 461 (565)
Q Consensus 393 ~l~~~---~~~~~~~~--------~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~ 461 (565)
.|... +++...+- .+|++.+..+++++|++|+++|||||+++++|+||+.|++||.||...++..++||
T Consensus 432 ~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQr 511 (746)
T KOG0354|consen 432 WLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQR 511 (746)
T ss_pred HHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHH
Confidence 98832 33333332 47999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCceeEEEEeccccH
Q 008443 462 IGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 462 ~GRagR~g~~g~~~~~~~~~d~ 483 (565)
.|| ||+. .|.++++++..+.
T Consensus 512 rGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 512 RGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred hcc-cccc-CCeEEEEEcchhH
Confidence 999 9984 4888888875433
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-34 Score=307.00 Aligned_cols=321 Identities=20% Similarity=0.254 Sum_probs=238.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|. .|+++|..+...+..|+ |..+.||+|||+++++|++...+. |+.++|++|+++||.|.++.+..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 354 89999999999988886 999999999999999999866654 7789999999999999999999999
Q ss_pred hcCCCceEEEEECCCc-HHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC----
Q 008443 219 RSLDSFKTAIVVGGTN-IAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG---- 285 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~---- 285 (565)
..+ ++.++++.|+.. ..+.. ....++|+++|++.| ++++.... ..++.+.++||||+|.++ +..
T Consensus 144 ~~l-Gl~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 144 EFL-GLTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred hhc-CCeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 886 799999999988 44433 234699999999999 66655432 355789999999999754 110
Q ss_pred -----------CHHHHHHHHHhCCCC--------C---------------------------------------------
Q 008443 286 -----------FEPQIREVMQNLPDK--------H--------------------------------------------- 301 (565)
Q Consensus 286 -----------~~~~~~~i~~~~~~~--------~--------------------------------------------- 301 (565)
....+..+...+.+. .
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 111122222222110 0
Q ss_pred ----------------------------------------------------------------eEEEEeccccHHHHHH
Q 008443 302 ----------------------------------------------------------------QTLLFSATMPVEIEAL 317 (565)
Q Consensus 302 ----------------------------------------------------------------~~l~~SAT~~~~~~~~ 317 (565)
++.|||+|...+-..+
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 3455555554433333
Q ss_pred HHhhcCCCeEEEecCcCCCCCce-EEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH
Q 008443 318 AQGYLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~ 396 (565)
.+.|-.+- +.+.. ..+.... ...........|...++..+...... ..++||||+++..++.+++.|.+
T Consensus 381 ~~~Y~l~v--~~IPt-~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~-------~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 381 FEVYNMEV--VQIPT-NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHET-------GRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred HHHhCCcE--EECCC-CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 33332221 11111 1111110 11123345567777777777654322 23699999999999999999999
Q ss_pred CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCc---cCcc-----EEEEcCCCCCccchhhhhcccccC
Q 008443 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV---MGVA-----HVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 397 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi---p~v~-----~Vi~~~~~~s~~~~~Q~~GRagR~ 468 (565)
.|+++..+||.+.+.++..+...++.| .|+|||++++||+|| |+|. +||+++.|.+...|+||+||+||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 999999999999988888888887776 699999999999999 7998 999999999999999999999999
Q ss_pred CCceeEEEEeccccHHH
Q 008443 469 GSMGQATSFYTDRDMLL 485 (565)
Q Consensus 469 g~~g~~~~~~~~~d~~~ 485 (565)
|.+|.++.+++..|..+
T Consensus 529 G~~G~s~~~is~eD~l~ 545 (790)
T PRK09200 529 GDPGSSQFFISLEDDLL 545 (790)
T ss_pred CCCeeEEEEEcchHHHH
Confidence 99999999998876544
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.5e-36 Score=302.70 Aligned_cols=300 Identities=20% Similarity=0.192 Sum_probs=202.9
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH---
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA--- 236 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 236 (565)
++++.||||+|||++|+++++..+... .+.+++|++|+++|+.|+.+.++.+++. .++.++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHh
Confidence 479999999999999999888765432 3678999999999999999999998753 233344432210
Q ss_pred ---------HHHHHH------hCCCeEEEECchHHHHHHHcCC----CCCC--CceEEEecchhhhhhCCCHHHHHHHHH
Q 008443 237 ---------EQRSEL------RGGVSIVVATPGRFLDHLQQGN----TSLS--RVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 237 ---------~~~~~~------~~~~~Ilv~T~~~l~~~~~~~~----~~~~--~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
...... ....+|+|+||+.++..+.... ..+. ..++|||||+|.+.+.++.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 000000 1236799999999987765421 1111 23789999999988654333 444444
Q ss_pred hCC-CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEe--ccchHHHHHHHHHHHHHHhhhccCC
Q 008443 296 NLP-DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 296 ~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~ 372 (565)
.+. .+.|+++||||++..+..+................... ....+.+... ....+...+...+ +.. .
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~-~~~-------~ 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLL-EFI-------K 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHH-HHh-------h
Confidence 443 46789999999997766665554332111111100000 0001111111 1112222232222 111 1
Q ss_pred CCCeEEEEEcchhhHHHHHHHHHHCCC--ceEEecCCCChhhHHH----HHHhhhcCCeeEEEeccccccCCCccCccEE
Q 008443 373 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRES----ALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (565)
Q Consensus 373 ~~~~~lvF~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vLv~T~~~~~Gidip~v~~V 446 (565)
...++||||+++++|+.+++.|.+.+. .+..+||++++.+|.. +++.|++|+..|||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 224699999999999999999988766 5999999999999976 48899999999999999999999996 8888
Q ss_pred EEcCCCCCccchhhhhcccccCCCc----eeEEEEecccc
Q 008443 447 VNLDLPKTVEDYVHRIGRTGRGGSM----GQATSFYTDRD 482 (565)
Q Consensus 447 i~~~~~~s~~~~~Q~~GRagR~g~~----g~~~~~~~~~d 482 (565)
|++..| ...|+||+||+||.|+. |.++++....+
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 888766 67899999999998754 36777766544
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-36 Score=284.92 Aligned_cols=332 Identities=18% Similarity=0.286 Sum_probs=241.3
Q ss_pred CCCC-CCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 140 EYTR-PTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 140 ~~~~-~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
|+.. -++.|+.|+..+..+ +|+.|++|||+||+++|.+|.+-. +...||+.|..+|++...+.+.++
T Consensus 16 Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 16 GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHHHHHHHHhc
Confidence 4443 378999999998866 489999999999999999998765 447899999999999988888776
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHH------hCCCeEEEECchHH----HHHHHcCCCCCCCceEEEecchhhhhhCC--
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSEL------RGGVSIVVATPGRF----LDHLQQGNTSLSRVSFVILDEADRMLDMG-- 285 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ilv~T~~~l----~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-- 285 (565)
.+.+..+....+..+..+.+ .....++..||+.. ++.+.+....-+-+.|+|+||+|+.++||
T Consensus 85 -----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD 159 (641)
T KOG0352|consen 85 -----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD 159 (641)
T ss_pred -----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccc
Confidence 34444444444443333222 24578999999875 22233332334458999999999999887
Q ss_pred CHHHHHHH--HHhCCCCCeEEEEeccccHHHHHHHHh--hcCCCeEEEecCcCCCCCceEEEEEEe-ccchHHHHHHHHH
Q 008443 286 FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQG--YLTDPVQVKVGKVSSPTANVIQILEKV-SENEKVDRLLALL 360 (565)
Q Consensus 286 ~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l 360 (565)
|++.|.++ ++..-+....+.+|||....+++.+-. .+.+|+.+.-.. ....++....... .-.+-...|.+..
T Consensus 160 FRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP--~FR~NLFYD~~~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 160 FRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP--TFRDNLFYDNHMKSFITDCLTVLADFS 237 (641)
T ss_pred cCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc--chhhhhhHHHHHHHHhhhHhHhHHHHH
Confidence 77777655 222334667999999998888665433 344554433221 1111111000000 0011112222222
Q ss_pred HHHHH----hhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccccc
Q 008443 361 VEEAF----LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 361 ~~~~~----~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
..... ..+......+-.||||.++++|+.++-.|...|+++..+|+++...+|.++.+.|-++++.||++|..+++
T Consensus 238 ~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGM 317 (641)
T KOG0352|consen 238 SSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGM 317 (641)
T ss_pred HHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecccc
Confidence 21111 11112223356999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
|||-|+|+.||+++++.+..-|.|-.|||||.|.+..|-++|...|...+..|
T Consensus 318 GVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 318 GVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred ccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999988777665
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=319.57 Aligned_cols=338 Identities=22% Similarity=0.297 Sum_probs=261.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
....+..++.+.|+..|+.||.+|+..+.+|++++|..+||||||++|++|+++++++.+ ..++|||.|+++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 444567888899999999999999999999999999999999999999999999999863 34789999999999
Q ss_pred HHHHHHHHHHHhcCC-CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC----CCCCCceEEEecchhhhh
Q 008443 208 QQIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRML 282 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~----~~~~~~~~iIiDE~H~~~ 282 (565)
+.+.++|+++....+ .+....++|++...+......+.++||+++|++|...+.... ..+.+++|||+||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999998875 578899999999888878888999999999999977554432 456779999999999643
Q ss_pred hCCCHH----HHHHH---HHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEe-----c--
Q 008443 283 DMGFEP----QIREV---MQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKV-----S-- 348 (565)
Q Consensus 283 ~~~~~~----~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-- 348 (565)
. .|+. .++++ ++..+...|+|+.|||..+.-+ +...+........+.....+........... .
T Consensus 209 G-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 209 G-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred c-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh
Confidence 2 1333 23333 3444567899999999986644 5555666555553433333333222222211 0
Q ss_pred -cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHH----HHHHHCC----CceEEecCCCChhhHHHHHHh
Q 008443 349 -ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS----EALVAEG----LHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 349 -~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~ 419 (565)
.......+...+......+ -++|+|+.++..++.+. ..+...+ ..+..+++++..++|..++..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~-------~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 287 IRRSALAELATLAALLVRNG-------IQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred cccchHHHHHHHHHHHHHcC-------ceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHH
Confidence 1122222222222222222 25999999999999986 4444445 568889999999999999999
Q ss_pred hhcCCeeEEEeccccccCCCccCccEEEEcCCCC-CccchhhhhcccccCCCceeEEEEecc
Q 008443 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
|+.|++.++++|.++.-|+||.+++.||+...|. +...|.||+||+||.++.+.++.++..
T Consensus 360 ~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 360 FKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred HhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999 899999999999999987777777763
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.5e-34 Score=298.99 Aligned_cols=320 Identities=21% Similarity=0.246 Sum_probs=238.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|..+...+..|+ +..++||+|||++|++|++...+. |..++|++|+++||.|.++.+..++..+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 478999999998888776 999999999999999998655443 5569999999999999999999999876
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC------CCCCCCceEEEecchhhhhh-CC--------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLD-MG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~~-~~-------- 285 (565)
++.+++++|+....+..... .++|+++||..| ++++..+ ...+..++++||||+|.++- ..
T Consensus 125 -GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 125 -GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred -CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 69999999998876554443 489999999999 8888765 24678899999999997652 11
Q ss_pred ----C---HHHHHHHHHhCCCC--------C-------------------------------------------------
Q 008443 286 ----F---EPQIREVMQNLPDK--------H------------------------------------------------- 301 (565)
Q Consensus 286 ----~---~~~~~~i~~~~~~~--------~------------------------------------------------- 301 (565)
. ......+...+..+ .
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0 00011111111100 0
Q ss_pred ------------------------------------------------------------eEEEEeccccHHHHHHHHhh
Q 008443 302 ------------------------------------------------------------QTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 302 ------------------------------------------------------------~~l~~SAT~~~~~~~~~~~~ 321 (565)
++.|||+|...+...+.+.|
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 34455555544434443333
Q ss_pred cCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCce
Q 008443 322 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~ 401 (565)
-.+.+.+..... ....+. ....+.+..+|...+++.+.+....+ .|+||||+++..++.+++.|.+.|+++
T Consensus 362 ~l~vv~IPtnkp-~~R~d~-~d~i~~t~~~k~~ai~~~i~~~~~~g-------rpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 362 NLEVVVVPTNRP-VIRKDL-SDLVYKTEEEKWKAVVDEIKERHAKG-------QPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred CCCEEEeCCCCC-eeeeeC-CCeEEcCHHHHHHHHHHHHHHHHhcC-------CCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 322211111100 000111 11223345567777777766554332 269999999999999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccC-------ccEEEEcCCCCCccchhhhhcccccCCCceeE
Q 008443 402 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG-------VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 474 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~-------v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~ 474 (565)
..+|++ +.+|+..+..|+.+...|+|||+|++||+||+. .-+||+++.|.|...|.|+.||+||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 779999999999999999999999999999998 45999999999999999999999999999999
Q ss_pred EEEeccccHHH
Q 008443 475 TSFYTDRDMLL 485 (565)
Q Consensus 475 ~~~~~~~d~~~ 485 (565)
..+++..|..+
T Consensus 511 ~~~ls~eD~l~ 521 (745)
T TIGR00963 511 RFFLSLEDNLM 521 (745)
T ss_pred EEEEeccHHHH
Confidence 99999887654
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.2e-34 Score=299.69 Aligned_cols=319 Identities=21% Similarity=0.230 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+++|..+...+.. ..++.++||+|||++|++|++...+. |+.++||+|+++|+.|+.+.+..++..+
T Consensus 70 rpydVQlig~l~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L- 138 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQ--GNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL- 138 (762)
T ss_pred CccHHHHHHHHHhcC--CceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc-
Confidence 455555444444444 47999999999999999998766553 5569999999999999999999998876
Q ss_pred CceEEEEECCCc---HHHHHHHHhCCCeEEEECchHH-HHHHHcC------CCCCCCceEEEecchhhhhh-CC------
Q 008443 223 SFKTAIVVGGTN---IAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLD-MG------ 285 (565)
Q Consensus 223 ~~~~~~~~g~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~~-~~------ 285 (565)
++.++...++.. ..........+++|+++||+.| ++++... ...+..+.++||||||.++- ..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 678887776522 1222223335799999999999 5655332 24467899999999998742 11
Q ss_pred ---------CHHHHHHHHHhCCCC--------------------------------------------------------
Q 008443 286 ---------FEPQIREVMQNLPDK-------------------------------------------------------- 300 (565)
Q Consensus 286 ---------~~~~~~~i~~~~~~~-------------------------------------------------------- 300 (565)
.......+...+.+.
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111111222222110
Q ss_pred -------------------------------------------------------------CeEEEEeccccHHHHHHHH
Q 008443 301 -------------------------------------------------------------HQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 301 -------------------------------------------------------------~~~l~~SAT~~~~~~~~~~ 319 (565)
.++.|||+|...+-.++.+
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 0345566665444444443
Q ss_pred hhcCCCeEEEecCcCCCCCc-eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC
Q 008443 320 GYLTDPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (565)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~ 398 (565)
-|-.+- +.+.. ..+... -.....+.....|...++..+.+....+ .++||||+++..++.+++.|.+.|
T Consensus 379 iY~l~v--~~IPt-~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~-------~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 379 TYSLSV--VKIPT-NKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETG-------QPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred HhCCCE--EEcCC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCC-------CCEEEEECcHHHHHHHHHHHHHCC
Confidence 332221 11111 111111 1112344556678888887776654322 259999999999999999999999
Q ss_pred CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCcc---------CccEEEEcCCCCCccchhhhhcccccCC
Q 008443 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---------GVAHVVNLDLPKTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 399 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip---------~v~~Vi~~~~~~s~~~~~Q~~GRagR~g 469 (565)
+++..+||++.+.++..+.+.++.| .|+|||++++||+||| ++.+|+++++|....+ +|+.||+||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999988888877777 6999999999999999 9999999999977666 99999999999
Q ss_pred CceeEEEEeccccHHH
Q 008443 470 SMGQATSFYTDRDMLL 485 (565)
Q Consensus 470 ~~g~~~~~~~~~d~~~ 485 (565)
.+|.++.|++..|..+
T Consensus 526 ~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 526 DPGSSQFFVSLEDDLI 541 (762)
T ss_pred CceeEEEEEccchhhh
Confidence 9999999999876544
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.8e-35 Score=306.97 Aligned_cols=306 Identities=17% Similarity=0.147 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHhc-C--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~-~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..|++||++|+..+.. + +..++++|||+|||++.+ .++..+ ++++|||||+..|+.||.++|.+++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4789999999999873 3 368999999999999984 444432 3459999999999999999999986
Q ss_pred hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc--------CCCCCCCceEEEecchhhhhhCCCHHHH
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--------GNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~--------~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
.. +...+..++|+.... .....+|+|+|++++.....+ ..+.-..+++||+||||++. ...+
T Consensus 323 ~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred CC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 43 234566666653221 123478999999988532211 11333578999999999986 4556
Q ss_pred HHHHHhCCCCCeEEEEeccccHHHHHH--HHhhcCCCeEEEecCcC----CCCCceEEEEEEec--cc------------
Q 008443 291 REVMQNLPDKHQTLLFSATMPVEIEAL--AQGYLTDPVQVKVGKVS----SPTANVIQILEKVS--EN------------ 350 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~------------ 350 (565)
+.++..+.... .||+||||.++.... +..++++ ..+...... .....+......++ ..
T Consensus 393 r~il~~l~a~~-RLGLTATP~ReD~~~~~L~~LiGP-~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQAHC-KLGLTATLVREDDKITDLNFLIGP-KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcCcCc-EEEEeecCcccCCchhhhhhhcCC-eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 77777776544 799999997543221 2222222 222211100 00111111111111 11
Q ss_pred ---------hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhh
Q 008443 351 ---------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR 421 (565)
Q Consensus 351 ---------~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 421 (565)
.|...+..++.. . ...+.++||||.+...++.+++.|. +..+||++++.+|..+++.|+
T Consensus 471 k~~l~~~np~K~~~~~~Li~~-h------e~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRF-H------EQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHH-H------hhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHH
Confidence 111111111111 1 1234579999999999999988872 456899999999999999998
Q ss_pred cC-CeeEEEeccccccCCCccCccEEEEcCCC-CCccchhhhhcccccCCCceeE-------EEEecccc
Q 008443 422 NG-STNILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQA-------TSFYTDRD 482 (565)
Q Consensus 422 ~g-~~~vLv~T~~~~~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GRagR~g~~g~~-------~~~~~~~d 482 (565)
+| .+++||+|+++++|+|+|++++||++++| .|...|+||+||++|.++.|.+ +.+++...
T Consensus 539 ~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 539 HNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred hCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 75 88999999999999999999999999987 5999999999999998876664 66666553
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.4e-34 Score=288.15 Aligned_cols=324 Identities=22% Similarity=0.268 Sum_probs=248.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC------CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR------DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~------~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
....+++.+...-..+||..|+.++..|...- +-|+.|.-|||||+++++.++..+. .|.++.+++
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------~G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------AGYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------cCCeeEEec
Confidence 34455555544444589999999999998441 3699999999999999888887654 388999999
Q ss_pred CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecc
Q 008443 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE 277 (565)
||.-||.|.++.+.+++... ++.+..++|..........+ .+..+||||| +.+.++...+.+++++||||
T Consensus 319 PTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEec
Confidence 99999999999999999986 59999999987765544443 4679999999 55666778899999999999
Q ss_pred hhhhhhCCCHHHHHHHHHhCCC-CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHH
Q 008443 278 ADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 356 (565)
-|++ +-.-+..+..... ...+|.|||||-+..-++.. +.+... ......++....+...+-..++...+
T Consensus 393 QHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldv---S~IdElP~GRkpI~T~~i~~~~~~~v 462 (677)
T COG1200 393 QHRF-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALTA--FGDLDV---SIIDELPPGRKPITTVVIPHERRPEV 462 (677)
T ss_pred cccc-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH--hccccc---hhhccCCCCCCceEEEEeccccHHHH
Confidence 9986 4444555555544 46699999999766554432 222111 11122222222223333445667788
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhH--------HHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRC--------DEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a--------~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
++.+.+....+.+ +.+.|+-+++. +.+++.|... ++++..+||.|+.+++++++++|++|+++
T Consensus 463 ~e~i~~ei~~GrQ-------aY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 463 YERIREEIAKGRQ-------AYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred HHHHHHHHHcCCE-------EEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 8888877765554 99999976654 5566666643 56799999999999999999999999999
Q ss_pred EEEeccccccCCCccCccEEEEcCCC-CCccchhhhhcccccCCCceeEEEEecccc
Q 008443 427 ILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d 482 (565)
|||||.+++.|||+|+.++.|..+.- .......|..||+||++....|++++.++.
T Consensus 536 ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 536 ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999888765 367888999999999999999999998876
No 78
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-35 Score=300.66 Aligned_cols=301 Identities=22% Similarity=0.242 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHhc----CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~----~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+++|++|+..+.. ++..++++|||+|||++++. ++..+ +..+|||||+.+|+.||.+.+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 88899999999999999844 44443 333999999999999999888877
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~ 297 (565)
+... ...+.+.|+... ... ..|+|+|.+++........+..+.+++||+|||||+.+. .++.+...+
T Consensus 104 ~~~~--~~~g~~~~~~~~------~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~ 170 (442)
T COG1061 104 LLLN--DEIGIYGGGEKE------LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELL 170 (442)
T ss_pred cCCc--cccceecCceec------cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhh
Confidence 6431 234445554321 111 469999999997653222345557999999999998744 345566665
Q ss_pred CCCCeEEEEeccccHHHHHH---HHhhcCCCeEEEecCcC----CCCCceEEEEEEe--ccchHHH--------------
Q 008443 298 PDKHQTLLFSATMPVEIEAL---AQGYLTDPVQVKVGKVS----SPTANVIQILEKV--SENEKVD-------------- 354 (565)
Q Consensus 298 ~~~~~~l~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~-------------- 354 (565)
.....+||+||||++..... ...+++ +..+...... ............. .......
T Consensus 171 ~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 171 SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 54433899999987554111 111221 2222222111 0001111111111 1100000
Q ss_pred -----------HHHH--HHHHHHHhhhccCC-CCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhh
Q 008443 355 -----------RLLA--LLVEEAFLAEKSCH-PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 420 (565)
Q Consensus 355 -----------~l~~--~l~~~~~~~~~~~~-~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 420 (565)
.+.. .-...........+ ...+++|||.++.+++.++..|...++ +..+++..+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 0000 00000000000111 234699999999999999999998888 88999999999999999999
Q ss_pred hcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccC
Q 008443 421 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~ 468 (565)
+.|++++||++.++.+|+|+|+++++|+.+++.|...|+||+||+.|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999999993
No 79
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-34 Score=312.59 Aligned_cols=329 Identities=21% Similarity=0.299 Sum_probs=251.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 136 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
...+|...+++-|.+||..++.|++++|.+|||.||++||.+|++-. ++..|||.|.++|...+...+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhh
Confidence 35679999999999999999999999999999999999999998754 5579999999999887666553
Q ss_pred HHHhcCCCceEEEEECCCcHHHHHHH----HhC--CCeEEEECchHHHHHHH--cCCCCCCC---ceEEEecchhhhhhC
Q 008443 216 ALSRSLDSFKTAIVVGGTNIAEQRSE----LRG--GVSIVVATPGRFLDHLQ--QGNTSLSR---VSFVILDEADRMLDM 284 (565)
Q Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~--~~~Ilv~T~~~l~~~~~--~~~~~~~~---~~~iIiDE~H~~~~~ 284 (565)
.. ++....+.++....++... ..+ .++|+..||+++..... .....+.. +.++||||||+.++|
T Consensus 326 ~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 326 KK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 32 5778888888776433222 234 68999999999843211 11122333 889999999999988
Q ss_pred C--CHHHHHHH---HHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008443 285 G--FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 285 ~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (565)
+ |++.|+++ ...++ ...+|++|||....+...+-..++-....... ......++...+..-........+...
T Consensus 401 gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK-SSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred cccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec-ccCCCCCceEEEEeccCccchHHHHHH
Confidence 6 88887765 33444 46799999999888766655544422211111 122223333222222211222222222
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCC
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 439 (565)
+. ..++...+||||.++.+|+.++..|...++.+..||++|+..+|+.+.+.|..++++|+|||=++++|||
T Consensus 479 ~~--------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 479 SK--------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred hh--------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 22 2244456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 008443 440 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 440 ip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~ 490 (565)
.|+|+.||||..|.|...|.|-+|||||.|....|++|+...|...++.+.
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877666553
No 80
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=278.72 Aligned_cols=295 Identities=29% Similarity=0.501 Sum_probs=229.1
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcC--CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSL--DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
.++|+-|.++|++|..+.++++-... +.++..++.||...+++...+..+.+|+|+||+++.+.+..+.+.+.++.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 78999999999999999665543222 4566678899999999999999999999999999999999999999999999
Q ss_pred EecchhhhhhCCCHHHHHHHHHhCC------CCCeEEEEeccccH-HHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEE
Q 008443 274 ILDEADRMLDMGFEPQIREVMQNLP------DKHQTLLFSATMPV-EIEALAQGYLTDPVQVKVGKVSSPTANVIQILEK 346 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~~------~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (565)
|+||++.++..+|...+.++...++ .+.|.++.|||+.. ++..+.++.+.-|..+........+..+.+....
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 9999999999888888777766654 24678999999842 4455555666666666666555544444433322
Q ss_pred eccc------------------------------hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH
Q 008443 347 VSEN------------------------------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 347 ~~~~------------------------------~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~ 396 (565)
+... +........+...........+...++||||.++..|+.|..++++
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 2110 1111122222222222222234445799999999999999999998
Q ss_pred CC---CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCcee
Q 008443 397 EG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 473 (565)
Q Consensus 397 ~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~ 473 (565)
+| +.|+.+||+..+.+|.+.++.|+.+.+++|||||++++|+||..+-.+|+...|.....|+||+||+||+.+.|.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcce
Confidence 74 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHH
Q 008443 474 ATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 474 ~~~~~~~~d~~~~~~l~ 490 (565)
++.++-.......+..+
T Consensus 608 aislvat~~ekvwyh~c 624 (725)
T KOG0349|consen 608 AISLVATVPEKVWYHWC 624 (725)
T ss_pred eEEEeeccchheeehhh
Confidence 99887655444444443
No 81
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.4e-33 Score=282.71 Aligned_cols=297 Identities=19% Similarity=0.189 Sum_probs=199.3
Q ss_pred HHHHHHHHHhcCCC--EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC---
Q 008443 147 IQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 221 (565)
Q Consensus 147 ~Q~~al~~l~~~~~--~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~--- 221 (565)
+|.++++.+.++++ +++++|||+|||++|+++++.. +.+++|++|+++|+.|+.+.++.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998875 7889999999999998887742 3458999999999999999999988532
Q ss_pred CCceEEEEECCCcHH--HHH------------------HHHhCCCeEEEECchHHHHHHHcCC--------CCCCCceEE
Q 008443 222 DSFKTAIVVGGTNIA--EQR------------------SELRGGVSIVVATPGRFLDHLQQGN--------TSLSRVSFV 273 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~--~~~------------------~~~~~~~~Ilv~T~~~l~~~~~~~~--------~~~~~~~~i 273 (565)
.+..+..+.|....+ ... ......+.|+++||+.|..++.... ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 234555566642221 110 0112357889999999965544311 124689999
Q ss_pred EecchhhhhhCCC-----HHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhh--cCCCeEEEecC-----c------CC
Q 008443 274 ILDEADRMLDMGF-----EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGY--LTDPVQVKVGK-----V------SS 335 (565)
Q Consensus 274 IiDE~H~~~~~~~-----~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-----~------~~ 335 (565)
||||+|.+..... ......++.......+++++|||++..+...+... +..+.....+. . ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999998764331 12233344433345689999999998877666654 34333222121 0 00
Q ss_pred C-------CCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC--CceEEecC
Q 008443 336 P-------TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHAVALHG 406 (565)
Q Consensus 336 ~-------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~--~~~~~~~~ 406 (565)
. .+.+...+.. ....+...+.. +.+......+ .....++||||+++..++.+++.|++.+ +.+..+||
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~-l~~~i~~~~~-~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSE-LAEEVIERFR-QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHH-HHHHHHHHHh-ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 0 0122222222 22223322222 2221111110 1133479999999999999999999864 57888999
Q ss_pred CCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccc
Q 008443 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTG 466 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRag 466 (565)
.+++.+|.+. ++.+|||||+++++|||+|.+ +|| ++ |.+...|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999988654 478899999999999999986 566 45 789999999999997
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=292.85 Aligned_cols=338 Identities=20% Similarity=0.267 Sum_probs=236.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEcCchhhHHHHHH
Q 008443 136 IEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~--~~~~~~~~~~Lil~P~~~L~~Q~~~ 212 (565)
...+++.+++.+|.+++|.+.+. .|+||+||||+|||.+|++.++..+.+.. .....++.+++||+|.++||.++.+
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 34567889999999999999865 48999999999999999999988777522 1123457889999999999999999
Q ss_pred HHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC---CCCCCCceEEEecchhhhhhCCCHHH
Q 008443 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTSLSRVSFVILDEADRMLDMGFEPQ 289 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~---~~~~~~~~~iIiDE~H~~~~~~~~~~ 289 (565)
.|.+.+... ++.+..++|++...... -..++|+|+||+++--.-++. ...+..+++|||||+|.+-+ ..++.
T Consensus 183 ~~~kkl~~~-gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpv 257 (1230)
T KOG0952|consen 183 KFSKKLAPL-GISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPV 257 (1230)
T ss_pred HHhhhcccc-cceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccch
Confidence 999888765 78999999998765543 234899999999983222221 23456799999999996644 35666
Q ss_pred HHHHHHhC-------CCCCeEEEEeccccHHHHHHHHhhcCCC--eEEEecCcCCCCCceEEEEEEeccc---hHHHHH-
Q 008443 290 IREVMQNL-------PDKHQTLLFSATMPVEIEALAQGYLTDP--VQVKVGKVSSPTANVIQILEKVSEN---EKVDRL- 356 (565)
Q Consensus 290 ~~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l- 356 (565)
++.|+.+. ....++|++|||+|+-.. .+. +++.+ ..+......-.+..+.+.+.-.... .....+
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~eD-vA~-fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNYED-VAR-FLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCHHH-HHH-HhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 66655443 456789999999986432 333 33322 2222111111222233333322222 111111
Q ss_pred ---HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC-----------------------CceEEecCCCCh
Q 008443 357 ---LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-----------------------LHAVALHGGRNQ 410 (565)
Q Consensus 357 ---~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~-----------------------~~~~~~~~~~~~ 410 (565)
.+.+.+... .+.+++|||.++..+-..|+.|.+.. .....+|++|..
T Consensus 336 ~~~~~kv~e~~~-------~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r 408 (1230)
T KOG0952|consen 336 EVCYDKVVEFLQ-------EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLR 408 (1230)
T ss_pred HHHHHHHHHHHH-------cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccch
Confidence 222222222 22359999999999888888876531 346788999999
Q ss_pred hhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE-----cCCCC------CccchhhhhcccccCC--CceeEEEE
Q 008443 411 SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-----LDLPK------TVEDYVHRIGRTGRGG--SMGQATSF 477 (565)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~-----~~~~~------s~~~~~Q~~GRagR~g--~~g~~~~~ 477 (565)
.+|..+.+.|..|.++||+||..++.|+|+|+ .+||. ||.-. +..+.+|..|||||.. ..|.++++
T Consensus 409 ~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 409 SDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred hhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 99999999999999999999999999999996 45543 33322 4556699999999954 56999988
Q ss_pred eccccHHHHHH
Q 008443 478 YTDRDMLLVAQ 488 (565)
Q Consensus 478 ~~~~d~~~~~~ 488 (565)
.+.+-...+..
T Consensus 488 Tt~dkl~~Y~s 498 (1230)
T KOG0952|consen 488 TTRDKLDHYES 498 (1230)
T ss_pred ecccHHHHHHH
Confidence 87765544443
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=260.95 Aligned_cols=341 Identities=18% Similarity=0.287 Sum_probs=253.6
Q ss_pred ccCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 124 TDMCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 124 ~~~~l~~~l~~~l~-~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
++++.+.+..+.|+ .+...+++|.|..+++....|++++++.|||.||+++|.+|++.. ...+|+|+|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 45666666666664 346678999999999999999999999999999999999999875 556899999
Q ss_pred chhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH------HhCCCeEEEECchHHHHH---HH--cCCCCCCCce
Q 008443 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE------LRGGVSIVVATPGRFLDH---LQ--QGNTSLSRVS 271 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~Ilv~T~~~l~~~---~~--~~~~~~~~~~ 271 (565)
.+.|.....-.++.+. +....+......++.... ......++..||+.+..- +. ...+....|.
T Consensus 143 lislmedqil~lkqlg-----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG-----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred hHHHHHHHHHHHHHhC-----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 9999998888888874 444445555444332211 123577999999988422 11 1235566799
Q ss_pred EEEecchhhhhhCC--CHHHHHH--HHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEe
Q 008443 272 FVILDEADRMLDMG--FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKV 347 (565)
Q Consensus 272 ~iIiDE~H~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (565)
+|-|||+|+..+|| |++.|.. |+.+--++..+|++|||..+++...++..+.-...+.... ....+++.......
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQK 296 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeC
Confidence 99999999999886 6666554 4544445677999999998887666665544222221111 11222333222222
Q ss_pred ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeE
Q 008443 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
+ ...+..++.+.+..... ..+...||||-+++.|+.++..|+.+|+.+..+|+.+.++++..+-+.|..|+++|
T Consensus 297 p--~n~dd~~edi~k~i~~~----f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqv 370 (695)
T KOG0353|consen 297 P--GNEDDCIEDIAKLIKGD----FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQV 370 (695)
T ss_pred C--CChHHHHHHHHHHhccc----cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEE
Confidence 2 12233333333332211 12235899999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccCCCccCccEEEEcCCCCCccchhh-------------------------------------------hhcc
Q 008443 428 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVH-------------------------------------------RIGR 464 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q-------------------------------------------~~GR 464 (565)
+|+|-++++|||-|+|+.||+...|.|...|.| ..||
T Consensus 371 ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgr 450 (695)
T KOG0353|consen 371 IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGR 450 (695)
T ss_pred EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccc
Confidence 999999999999999999999999999999999 7899
Q ss_pred cccCCCceeEEEEeccccHHHHH
Q 008443 465 TGRGGSMGQATSFYTDRDMLLVA 487 (565)
Q Consensus 465 agR~g~~g~~~~~~~~~d~~~~~ 487 (565)
|||.+.+..|+++|.-.|.....
T Consensus 451 agrd~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 451 AGRDDMKADCILYYGFADIFKIS 473 (695)
T ss_pred cccCCCcccEEEEechHHHHhHH
Confidence 99999999999999876654433
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.8e-31 Score=287.05 Aligned_cols=333 Identities=19% Similarity=0.191 Sum_probs=213.2
Q ss_pred CCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..|.|||..++..+... ..+|++.++|.|||..+. .++..++.. +...++|||||. .|..||..++.+.+.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAg-lil~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAG-MIIHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHH-HHHHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 36999999998877543 369999999999999884 445544443 134679999996 899999999988773
Q ss_pred cCCCceEEEEECCCcHHHHHH---HHhCCCeEEEECchHHHHHH-HcCCCCCCCceEEEecchhhhhhCC--CHHHHHHH
Q 008443 220 SLDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDMG--FEPQIREV 293 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ilv~T~~~l~~~~-~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~~i 293 (565)
+...++.++ ....... ......+++|+|.+.+...- ....+.-..+++|||||||++.... ....++.+
T Consensus 224 ----l~~~i~~~~-~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 ----LRFSLFDEE-RYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ----CCeEEEcCc-chhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 333333332 2211100 01124689999999886421 1111333479999999999986321 11223333
Q ss_pred HHhCCCCCeEEEEeccccHH----HHH---------------H-------------HH-----------------hhcCC
Q 008443 294 MQNLPDKHQTLLFSATMPVE----IEA---------------L-------------AQ-----------------GYLTD 324 (565)
Q Consensus 294 ~~~~~~~~~~l~~SAT~~~~----~~~---------------~-------------~~-----------------~~~~~ 324 (565)
.........+|++||||... ... + +. .++..
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 22222223489999999310 000 0 00 00000
Q ss_pred -----------------------------------CeEEEecC--cCCCCCceEEEE-EEecc-----------------
Q 008443 325 -----------------------------------PVQVKVGK--VSSPTANVIQIL-EKVSE----------------- 349 (565)
Q Consensus 325 -----------------------------------~~~~~~~~--~~~~~~~~~~~~-~~~~~----------------- 349 (565)
.+.++... ....+....+.+ ...+.
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 00000000 000000000000 00000
Q ss_pred -------------------chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHH-HCCCceEEecCCCC
Q 008443 350 -------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALHGGRN 409 (565)
Q Consensus 350 -------------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~-~~~~~~~~~~~~~~ 409 (565)
+.|...+.+.+. .....++||||+++..+..+++.|. ..|+.+..+||+|+
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~---------~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLK---------SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHH---------hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 001111111111 1224579999999999999999994 66999999999999
Q ss_pred hhhHHHHHHhhhcC--CeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHH
Q 008443 410 QSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 487 (565)
Q Consensus 410 ~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~ 487 (565)
+.+|..+++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++...+.....
T Consensus 530 ~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e 609 (956)
T PRK04914 530 IIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQE 609 (956)
T ss_pred HHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHH
Confidence 99999999999984 5999999999999999999999999999999999999999999999999987777655444444
Q ss_pred HHHHHHhh
Q 008443 488 QIKKAIVD 495 (565)
Q Consensus 488 ~l~~~~~~ 495 (565)
.+.+.+.+
T Consensus 610 ~i~~~~~~ 617 (956)
T PRK04914 610 RLFRWYHE 617 (956)
T ss_pred HHHHHHhh
Confidence 44444433
No 85
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.8e-32 Score=277.59 Aligned_cols=311 Identities=22% Similarity=0.259 Sum_probs=231.6
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|..+|++|+..+..|..++|.|+|.+|||+++..++... .+ ++.|++|..|-++|-+|-++.|+..|++
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~-------h~TR~iYTSPIKALSNQKfRDFk~tF~D- 366 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK-------HMTRTIYTSPIKALSNQKFRDFKETFGD- 366 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh-------hccceEecchhhhhccchHHHHHHhccc-
Confidence 47899999999999999999999999999999976544332 22 4788999999999999999999999865
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
+++++|+. .++..+.++|+|.+.|.+++.++.-.++++.+||+||+|.+.+...+-.|++++-.+|...
T Consensus 367 ----vgLlTGDv-------qinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 367 ----VGLLTGDV-------QINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred ----cceeecce-------eeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 33788885 4667789999999999999999988889999999999999988888888999999999999
Q ss_pred eEEEEeccccHHHHHH--HHhhcCCCeEEEecCcCCCCCceEEEEEEec-------------------------------
Q 008443 302 QTLLFSATMPVEIEAL--AQGYLTDPVQVKVGKVSSPTANVIQILEKVS------------------------------- 348 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 348 (565)
++|++|||.|+..+.. +.+.-... +.+......+..+.+.+....
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~--IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~ 513 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKT--IYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFV 513 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCce--EEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccc
Confidence 9999999998765532 22221111 111111111111111000000
Q ss_pred --------------------------------cchHH--HHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHH
Q 008443 349 --------------------------------ENEKV--DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (565)
Q Consensus 349 --------------------------------~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l 394 (565)
..++. ...+..+.... +...-|++|||-+++.|++.++.|
T Consensus 514 ~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~------k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 514 DVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLR------KKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHh------hcccCceEEEEEccccHHHHHHHH
Confidence 00000 01111111111 112237999999999999999998
Q ss_pred HHCC---------------------------------------CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccc
Q 008443 395 VAEG---------------------------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 395 ~~~~---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
...+ ..++++||++-+--++-+...|..|-++||+||.+++
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFA 667 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFA 667 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhh
Confidence 6521 2467899999999999999999999999999999999
Q ss_pred cCCCccCccEEEEcCC---------CCCccchhhhhcccccCCC--ceeEEEEeccc
Q 008443 436 RGLDVMGVAHVVNLDL---------PKTVEDYVHRIGRTGRGGS--MGQATSFYTDR 481 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~---------~~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~ 481 (565)
+|||+|.-.+|+. .. -..+..|.|++|||||.|- .|.+++++...
T Consensus 668 MGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 668 MGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999996555542 21 2378999999999999984 58888887654
No 86
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=3.4e-31 Score=294.71 Aligned_cols=320 Identities=19% Similarity=0.249 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHHh----cC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVAL----SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~----~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
..|+++|.+|+..+. +| +++|++++||||||.++ +.++..+++.. ..+++|||||+.+|+.|+.+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 468999999998875 33 57999999999999986 55666665532 356899999999999999999988
Q ss_pred HHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-----CCCCCCceEEEecchhhhhhC-------
Q 008443 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDM------- 284 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~------- 284 (565)
+.... ......+.+.....+. .......|+|+|+++|...+... ...+..+++|||||||+....
T Consensus 486 ~~~~~-~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEG-DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccc-ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 63211 1111111111111111 12345789999999997765432 246788999999999996310
Q ss_pred --------CCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHH--------------HhhcC---CCeEEEecC--cCCC-
Q 008443 285 --------GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALA--------------QGYLT---DPVQVKVGK--VSSP- 336 (565)
Q Consensus 285 --------~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~--------------~~~~~---~~~~~~~~~--~~~~- 336 (565)
++...++.++.++. ...|||||||......+. ..++. .|..+.... ....
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 12467889999885 358999999975543222 12222 122221100 0000
Q ss_pred --CCce---E----EE-EEEeccc---------------hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHH
Q 008443 337 --TANV---I----QI-LEKVSEN---------------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS 391 (565)
Q Consensus 337 --~~~~---~----~~-~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~ 391 (565)
...+ . .. ....... .....++..+.+.. .. ...+++||||.++.+|+.+.
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l----~~-~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL----DP-TGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH----hc-cCCCcEEEEEcCHHHHHHHH
Confidence 0000 0 00 0000000 00111112222211 11 12358999999999999998
Q ss_pred HHHHHC------CC---ceEEecCCCChhhHHHHHHhhhcCCe-eEEEeccccccCCCccCccEEEEcCCCCCccchhhh
Q 008443 392 EALVAE------GL---HAVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHR 461 (565)
Q Consensus 392 ~~l~~~------~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~ 461 (565)
+.|.+. ++ .+..+||+++ ++..++++|+++.. .|+|+++++.+|+|+|.|.+||+++++.|...|+||
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Qm 793 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQM 793 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHH
Confidence 887653 22 4566888875 57789999999887 699999999999999999999999999999999999
Q ss_pred hcccccCCC--ceeEEEEec
Q 008443 462 IGRTGRGGS--MGQATSFYT 479 (565)
Q Consensus 462 ~GRagR~g~--~g~~~~~~~ 479 (565)
+||+.|... .+...++++
T Consensus 794 IGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 794 LGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HhhhccCCccCCCceEEEEe
Confidence 999999754 345555554
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.6e-30 Score=276.61 Aligned_cols=322 Identities=22% Similarity=0.271 Sum_probs=249.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL----SGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~----~~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
.+.+..+.+...-.-+-|+-|..||..+. +++ |-||||.-|.|||.+++-+++..++ +|++|.|||
T Consensus 579 ~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLV 650 (1139)
T COG1197 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLV 650 (1139)
T ss_pred CChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEc
Confidence 34444444444333467999999999987 344 5799999999999999766666554 489999999
Q ss_pred CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecc
Q 008443 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE 277 (565)
||.-|++|.+++|+..|.+. .+++..+.--...+++...+ .+..|||||| +.+....+.+.+++++||||
T Consensus 651 PTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDE 724 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDE 724 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEec
Confidence 99999999999999999987 58888888777766665444 4789999999 56666778899999999999
Q ss_pred hhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHH
Q 008443 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 357 (565)
.|+++ -.-++-++.++.+.-+|-|||||-+.+-.+.-..+.+.-.+ .+++.+...+..++...+. ..+.
T Consensus 725 EqRFG-----Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI-----~TPP~~R~pV~T~V~~~d~-~~ir 793 (1139)
T COG1197 725 EQRFG-----VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVI-----ATPPEDRLPVKTFVSEYDD-LLIR 793 (1139)
T ss_pred hhhcC-----ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhc-----cCCCCCCcceEEEEecCCh-HHHH
Confidence 99964 33355666667788899999999766666665555543333 3333333333333333322 2233
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccc
Q 008443 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 435 (565)
+.+......+ +++...+|+++..+.+++.|.+. ..++...||.|+..+-++++..|.+|+.+|||||.+++
T Consensus 794 eAI~REl~Rg-------GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIE 866 (1139)
T COG1197 794 EAILRELLRG-------GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIE 866 (1139)
T ss_pred HHHHHHHhcC-------CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeee
Confidence 3344433333 35888889999999999999887 56789999999999999999999999999999999999
Q ss_pred cCCCccCccEEEEcCCC-CCccchhhhhcccccCCCceeEEEEeccc
Q 008443 436 RGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 436 ~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
.|||||++|++|.-+.. ....+..|..||+||.++.+.|+.++.+.
T Consensus 867 tGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 867 TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999887765 47888999999999999999999999864
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.4e-31 Score=288.39 Aligned_cols=306 Identities=22% Similarity=0.309 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc----hhhHHHHHHHHHHHHhcC
Q 008443 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT----RELAQQIEKEVKALSRSL 221 (565)
Q Consensus 146 ~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~----~~L~~Q~~~~~~~~~~~~ 221 (565)
.+-.+.++.+..++.++|+|+||||||.. +|.+...... +....+++.-|+ ++|+.|+.+++..-++.
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~- 148 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGG- 148 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc-
Confidence 34455666776777788999999999984 7744332211 112234455586 46666666666543322
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh-hhhhCCCHHH-HHHHHHhCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPD 299 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~i~~~~~~ 299 (565)
.+++-+.... ....+++|+|+|++.|++.+..+. .+.++++||||||| ++++.+|... +..++.. .+
T Consensus 149 ---~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rp 217 (1294)
T PRK11131 149 ---CVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RP 217 (1294)
T ss_pred ---eeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CC
Confidence 2222221111 223568999999999999987654 48899999999999 5777776543 3444333 34
Q ss_pred CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccc------hHHHHHHHHHHHHHHhhhccCCC
Q 008443 300 KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSEN------EKVDRLLALLVEEAFLAEKSCHP 373 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~ 373 (565)
+.|+|+||||++.+ .+...+...+ .+.+..... .+...+...... +....++..+.... ...
T Consensus 218 dlKvILmSATid~e--~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~------~~~ 285 (1294)
T PRK11131 218 DLKVIITSATIDPE--RFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELG------REG 285 (1294)
T ss_pred CceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHh------cCC
Confidence 68999999999743 4444443333 344433221 233333322211 12222222222111 123
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCc---eEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLH---AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~ 450 (565)
.+.+||||+++.+++.+++.|...++. +..+||++++++|..+++. .|..+|||||+++++|||||+|++||+++
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECC
Confidence 346999999999999999999988764 6789999999999999886 57889999999999999999999999986
Q ss_pred C---------------C---CCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 451 L---------------P---KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 451 ~---------------~---~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
. | .|...|.||+||+||. .+|.|+.+|+..+...
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 2 3557899999999999 6799999999877543
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=260.24 Aligned_cols=326 Identities=21% Similarity=0.250 Sum_probs=239.6
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|.|+|..|+..+.++..+||.|.|.+|||.++..++...+.. ..||+|..|-++|-+|-++++..-|++
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 47899999999999999999999999999999987666555443 678999999999999999999988764
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
+++++|+. .++.++..+|+|.+.|..++.++.--+..+.+||+||+|.|-+...+-.|..-+-.++++.
T Consensus 199 ----VGLMTGDV-------TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 ----VGLMTGDV-------TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred ----cceeecce-------eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 67788875 3456788999999999999999998899999999999999988877777888888899999
Q ss_pred eEEEEeccccHHHH--HHHHhhcCCCeEE-EecCcCCCCCceE------EEEEEecc-----chHHHHHHHHHHHHHHhh
Q 008443 302 QTLLFSATMPVEIE--ALAQGYLTDPVQV-KVGKVSSPTANVI------QILEKVSE-----NEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 302 ~~l~~SAT~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~l~~~l~~~~~~~ 367 (565)
+.+++|||+|+..+ .++...-..|..+ ......++..... -++..++. ++.....+..+.......
T Consensus 268 r~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 268 RFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred eEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 99999999997654 2333333334333 2333223222111 01111111 122222233332222111
Q ss_pred hc-----------------------------cCCCCCeEEEEEcchhhHHHHHHHHHHC---------------------
Q 008443 368 EK-----------------------------SCHPFPLTIVFVERKTRCDEVSEALVAE--------------------- 397 (565)
Q Consensus 368 ~~-----------------------------~~~~~~~~lvF~~~~~~a~~l~~~l~~~--------------------- 397 (565)
.+ ......|+|||+-++++|+.+|-.+.+.
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 00 0011247999999999998888776442
Q ss_pred ------------------CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC-------
Q 008443 398 ------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------- 452 (565)
Q Consensus 398 ------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------- 452 (565)
...+..+|+|+-+--++.+.-.|++|-+++|+||.+++.|+|+|. .+|++...-
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKF 506 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCcce
Confidence 124678999999999999999999999999999999999999996 455543321
Q ss_pred --CCccchhhhhcccccCCC--ceeEEEEeccc-cHHHHHH
Q 008443 453 --KTVEDYVHRIGRTGRGGS--MGQATSFYTDR-DMLLVAQ 488 (565)
Q Consensus 453 --~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~-d~~~~~~ 488 (565)
-|.-.|+|+.|||||.|. .|.|+++++.. +....+.
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 277899999999999985 58888888765 3333333
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=260.21 Aligned_cols=318 Identities=20% Similarity=0.256 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+++|.-.--.+..|+ |..++||+|||++|++|++..++. |..++||+|+++||.|.++.+..++..+
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l- 150 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL- 150 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc-
Confidence 67778866666665554 899999999999999999977664 5569999999999999999999999876
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC-CCCC-----CCceEEEecchhhhh-hCC---------
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTSL-----SRVSFVILDEADRML-DMG--------- 285 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-~~~~-----~~~~~iIiDE~H~~~-~~~--------- 285 (565)
++.+++++|+....+....+ .++|++|||+.| ++++..+ .+.+ ..+.++||||+|.++ |..
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 69999999998877665444 589999999999 8888876 2333 579999999999764 211
Q ss_pred ------CHHHHHHHHHhCCCC--------------CeEEE----------------------------------------
Q 008443 286 ------FEPQIREVMQNLPDK--------------HQTLL---------------------------------------- 305 (565)
Q Consensus 286 ------~~~~~~~i~~~~~~~--------------~~~l~---------------------------------------- 305 (565)
....+..+...+... .+.+.
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 111122222222111 11122
Q ss_pred ----------------------------------------------------------------------------Eecc
Q 008443 306 ----------------------------------------------------------------------------FSAT 309 (565)
Q Consensus 306 ----------------------------------------------------------------------------~SAT 309 (565)
||+|
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 2222
Q ss_pred ccHHHHHHHHhhcCCCeEEEecCcCCCCCc-eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHH
Q 008443 310 MPVEIEALAQGYLTDPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCD 388 (565)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~ 388 (565)
...+-..+.+-|-.+-+ .+. ...+... -.....+.+...|...+++.+.+....+ .|+||||++++.++
T Consensus 389 a~te~~Ef~~iY~l~Vv--~IP-tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g-------~PVLVgt~Sie~sE 458 (896)
T PRK13104 389 ADTEAYEFQQIYNLEVV--VIP-TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRK-------QPVLVGTVSIEASE 458 (896)
T ss_pred ChhHHHHHHHHhCCCEE--ECC-CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCC-------CCEEEEeCcHHHHH
Confidence 22111111111111100 000 0111100 0112344456677777777776654332 36999999999999
Q ss_pred HHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccC--------------------------
Q 008443 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG-------------------------- 442 (565)
Q Consensus 389 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~-------------------------- 442 (565)
.+++.|.+.|+++..+|+.+.+.+++.+.+.|+.|. |+|||+|++||+||.=
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999851
Q ss_pred -------c-----cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 443 -------V-----AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 443 -------v-----~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
| =+||-...+.|...-.|..||+||.|.+|.+-.|++-+|.-+
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 1 167888888999999999999999999999999998877544
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=267.07 Aligned_cols=339 Identities=19% Similarity=0.256 Sum_probs=235.5
Q ss_pred HCCCCCCCHHHHHHHHHHhcCC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCC---CCCCeEEEEcCchhhHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR---GDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~---~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
..|...++++|....+..+.+. ++++|||||+|||.++++.+++.+-....... -...+++|++|..+|++.+...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 3566779999999999988775 79999999999999999999998776543211 1234799999999999999999
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC---CCCCceEEEecchhhhhhCCCHHHH
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT---SLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~---~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
|.+.+... ++.+.-++|+...... ...+..|+||||+.+- .+.++.. -.+-++++||||.|.+-+ +.++.+
T Consensus 384 fSkRla~~-GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvL 457 (1674)
T KOG0951|consen 384 FSKRLAPL-GITVLELTGDSQLGKE---QIEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVL 457 (1674)
T ss_pred HHhhcccc-CcEEEEecccccchhh---hhhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhccc-ccchHH
Confidence 99998886 7999999998664332 1234789999999983 3333322 223488999999996643 345555
Q ss_pred HHHHHhC-------CCCCeEEEEeccccHHHHHHHHhhcC-CCeEEEecCcCCCCCceEEEEEEeccchH---HHHHHHH
Q 008443 291 REVMQNL-------PDKHQTLLFSATMPVEIEALAQGYLT-DPVQVKVGKVSSPTANVIQILEKVSENEK---VDRLLAL 359 (565)
Q Consensus 291 ~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~ 359 (565)
..|.... ...++++|+|||+|+-.. +..++. ++..+......-.+..+.+.+..+...+. .+.+-+.
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~ 535 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEA 535 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchhh--hHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHH
Confidence 5544332 347889999999997433 222222 22122222222222334444444433322 2222222
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH-------------------------------------CCCceE
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-------------------------------------EGLHAV 402 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~-------------------------------------~~~~~~ 402 (565)
.-+...... +. .++|||+.+++++.+.|+.++. ..+.++
T Consensus 536 ~yeKVm~~a---gk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 536 CYEKVLEHA---GK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHhC---CC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 222222211 11 4699999999998777776652 135789
Q ss_pred EecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEE----EcCC------CCCccchhhhhcccccCCC--
Q 008443 403 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLDL------PKTVEDYVHRIGRTGRGGS-- 470 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----~~~~------~~s~~~~~Q~~GRagR~g~-- 470 (565)
.+|+||+..+|..+.+.|++|+++|||+|..+++|+|+|.-+++| .||+ +.++.+.+||+|||||.+.
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~ 691 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDT 691 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCc
Confidence 999999999999999999999999999999999999999654444 2444 3488999999999999653
Q ss_pred ceeEEEEeccccHHHHHH
Q 008443 471 MGQATSFYTDRDMLLVAQ 488 (565)
Q Consensus 471 ~g~~~~~~~~~d~~~~~~ 488 (565)
.|..++..+..+..+...
T Consensus 692 ~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 692 CGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CCceeeccCchHhhhhHH
Confidence 477777776666554444
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.7e-29 Score=276.94 Aligned_cols=307 Identities=20% Similarity=0.268 Sum_probs=211.9
Q ss_pred HHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEE
Q 008443 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 228 (565)
Q Consensus 149 ~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 228 (565)
.+.+..+..++.++|+|+||||||.. +|.+..-... +...++++.-|++--+..++.++...++...+..+++
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 45666666677789999999999985 5654332111 1233566777999888888888877764322333333
Q ss_pred EECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh-hhhhCCCHHH-HHHHHHhCCCCCeEEEE
Q 008443 229 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLLF 306 (565)
Q Consensus 229 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H-~~~~~~~~~~-~~~i~~~~~~~~~~l~~ 306 (565)
-..... ....+..|.|+|++.|++.+..+. .+.++++|||||+| +.++.++.-. ++.++.. .++.|+|+|
T Consensus 146 ~vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlm 217 (1283)
T TIGR01967 146 KVRFHD------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIIT 217 (1283)
T ss_pred EEcCCc------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEE
Confidence 222221 223567899999999998887653 47899999999999 5777776644 4555544 357899999
Q ss_pred eccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEecc------chHHHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 008443 307 SATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSE------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (565)
Q Consensus 307 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF 380 (565)
|||+.. ..+...+...+ .+.+..... .+...+..... .+....+...+..... ...+.+|||
T Consensus 218 SATld~--~~fa~~F~~ap-vI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~------~~~GdILVF 285 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAP-IIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA------EGPGDILIF 285 (1283)
T ss_pred eCCcCH--HHHHHHhcCCC-EEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh------hCCCCEEEe
Confidence 999974 34444333333 344432221 12222222211 1223333333333221 122469999
Q ss_pred EcchhhHHHHHHHHHHCC---CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCC----
Q 008443 381 VERKTRCDEVSEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---- 453 (565)
Q Consensus 381 ~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~---- 453 (565)
++++.+++.+++.|.+.+ +.+..+||++++++|..+++.+ +..+|||||++++.|||||+|++||+++.+.
T Consensus 286 Lpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~y 363 (1283)
T TIGR01967 286 LPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRY 363 (1283)
T ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccc
Confidence 999999999999999864 4588999999999999987654 3468999999999999999999999988542
Q ss_pred --------------CccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 454 --------------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 454 --------------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
|...|.||.||+||.+ +|.|+.+|+..+...
T Consensus 364 d~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 364 SYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 5578999999999997 799999999876543
No 93
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=5.1e-29 Score=231.88 Aligned_cols=202 Identities=51% Similarity=0.848 Sum_probs=180.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 123 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+.... ..+++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 56788999999999999999999999999999999999999999999999999999998877642 124788999999
Q ss_pred chhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+++|+.|+.+.++.+.... ++.+..+.|+....+....+..+++|+|+||+.|...+......+.++++||+||+|++.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 78 TRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 9999999999999987653 678888999888777766676789999999999999988887888899999999999998
Q ss_pred hCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEE
Q 008443 283 DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQV 328 (565)
Q Consensus 283 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 328 (565)
+.++...+..++..++...|++++|||++.....+...++.+++.+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8888999999999998899999999999999988888888877654
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.3e-29 Score=271.24 Aligned_cols=321 Identities=22% Similarity=0.279 Sum_probs=232.4
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|.++|++|+..|.++.+++++||||+|||+++.+++.. .+. ++.+++|..|.++|.+|.++.|...+++.
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~-al~-------~~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIAL-ALR-------DGQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHH-HHH-------cCCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 3789999999999999999999999999999998655544 444 36779999999999999999999998754
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
.-.+++++|+. .+++++.++|+|.+.|.+++..+...+.++..||+||+|.+.+...+..++.++-.++...
T Consensus 190 -~~~vGL~TGDv-------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 190 -ADMVGLMTGDV-------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred -hhhccceecce-------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 33568888886 4567899999999999999999988999999999999999999988999999999999999
Q ss_pred eEEEEeccccHHHH--HHHHhhcCCCeEEEecCcCCCCCceEEE------EEEeccchH-----HHHHHHHHH-H--HHH
Q 008443 302 QTLLFSATMPVEIE--ALAQGYLTDPVQVKVGKVSSPTANVIQI------LEKVSENEK-----VDRLLALLV-E--EAF 365 (565)
Q Consensus 302 ~~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----~~~l~~~l~-~--~~~ 365 (565)
+++++|||.++..+ .++...-..+..+.... ..+.+-.... +..++...+ .......+. . ...
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec-CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 99999999987643 33332223333222211 1111111111 111111111 000011111 0 000
Q ss_pred h------------------------------hhccCCCCCeEEEEEcchhhHHHHHHHHHHC------------------
Q 008443 366 L------------------------------AEKSCHPFPLTIVFVERKTRCDEVSEALVAE------------------ 397 (565)
Q Consensus 366 ~------------------------------~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~------------------ 397 (565)
. ........-|+|+||-++..|+..+..+...
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 0 0000012237999999999997777665420
Q ss_pred ----------CC-------------ceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEE----EcC
Q 008443 398 ----------GL-------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLD 450 (565)
Q Consensus 398 ----------~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----~~~ 450 (565)
++ ..+.+|+++-+..+..+.+.|..|.++|+++|.+++.|+|+|.-++|+ .+|
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~d 500 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFD 500 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEec
Confidence 11 245789999999999999999999999999999999999999655553 122
Q ss_pred ----CCCCccchhhhhcccccCCCc--eeEEEEec
Q 008443 451 ----LPKTVEDYVHRIGRTGRGGSM--GQATSFYT 479 (565)
Q Consensus 451 ----~~~s~~~~~Q~~GRagR~g~~--g~~~~~~~ 479 (565)
...++..|+|+.|||||.|.+ |.++++..
T Consensus 501 G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 501 GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred CCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 134789999999999999965 77777743
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.2e-28 Score=254.69 Aligned_cols=319 Identities=21% Similarity=0.268 Sum_probs=237.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-..-.+..|+ |..+.||+|||+++.+|++-..+. |..+-+++|+..||.|.++.+..++..+
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 368889988877777775 899999999999999999754443 5558899999999999999999999876
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC--------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++++|+....+....+ .++|+++|+..| ++++.... ..+..+.++||||+|.++ +..
T Consensus 150 -Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 79999999998888776664 489999999999 88887654 236779999999999754 210
Q ss_pred -------CHHHHHHHHHhCCCC--------C-------------------------------------------------
Q 008443 286 -------FEPQIREVMQNLPDK--------H------------------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~~--------~------------------------------------------------- 301 (565)
....+..+...+... .
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 111122222222110 0
Q ss_pred ------------------------------------------------------------eEEEEeccccHHHHHHHHhh
Q 008443 302 ------------------------------------------------------------QTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 302 ------------------------------------------------------------~~l~~SAT~~~~~~~~~~~~ 321 (565)
++.|||+|...+...+.+-|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 34555666554444444444
Q ss_pred cCCCeEEEecCcCCCCCceE-EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCc
Q 008443 322 LTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 400 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~ 400 (565)
-.+-+.+ .. ..+..... ....+.+..+|...+...+.+.... +.|+||||+++..++.+++.|.+.|++
T Consensus 387 ~l~vv~I--Pt-nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~-------grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 387 NLDVVVI--PT-NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKK-------GQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred CCCEEEc--CC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 3222111 11 11111111 1233445667778887777654432 226999999999999999999999999
Q ss_pred eEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCc-------------------------------------
Q 008443 401 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------- 443 (565)
Q Consensus 401 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v------------------------------------- 443 (565)
+..+|+. +.+|+..+..|+.+...|+|||++++||+||+=-
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 7799999999999999999999999999999642
Q ss_pred -cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 444 -AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 444 -~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
=+||....+.|...-.|..||+||.|.+|.+-.|++-+|.-+
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 167888889999999999999999999999999998876544
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-27 Score=220.42 Aligned_cols=307 Identities=19% Similarity=0.196 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|++.|+.+-..+. +.++.||.|.||+|||.+. ++.++..+++ |.++.+..|+...+.+++.+++.-|
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78999998877665 5578999999999999985 8899998885 8899999999999999999999988
Q ss_pred hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
. +..+.+++|+.... ....++|+|...|+++- +.||++||||+|.+--..-.....++-...+
T Consensus 169 ~---~~~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 S---NCDIDLLYGDSDSY-------FRAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred c---cCCeeeEecCCchh-------ccccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 5 35678888886432 12679999988887553 3599999999997643322333445555556
Q ss_pred CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHH------H-HHHHHHHHHHHhhhccC
Q 008443 299 DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKV------D-RLLALLVEEAFLAEKSC 371 (565)
Q Consensus 299 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~l~~~l~~~~~~~~~~~ 371 (565)
...-+|.+||||+..++.-+...-.. .+.+.......+-....+.+.....|. . .+...+.+.. +
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~----~-- 303 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR----K-- 303 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH----h--
Confidence 66679999999998876655433222 222222222222222333343333221 1 2333333322 2
Q ss_pred CCCCeEEEEEcchhhHHHHHHHHHHC-C-CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEc
Q 008443 372 HPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 372 ~~~~~~lvF~~~~~~a~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
.+.|++||+++.+..+.+++.|+.. + ..++.+|+.. ..|.+.++.|++|++++||+|.++++|+.+|+|+++|.-
T Consensus 304 -~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg 380 (441)
T COG4098 304 -TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG 380 (441)
T ss_pred -cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec
Confidence 2236999999999999999999553 3 3456777754 478999999999999999999999999999999988764
Q ss_pred CCC--CCccchhhhhcccccCC--CceeEEEEeccccHHH
Q 008443 450 DLP--KTVEDYVHRIGRTGRGG--SMGQATSFYTDRDMLL 485 (565)
Q Consensus 450 ~~~--~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~d~~~ 485 (565)
.-. .+-...+|.+||+||.- ..|.++.|-.......
T Consensus 381 aeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 381 AEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred CCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 433 46677899999999954 4577777766554433
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.2e-28 Score=253.64 Aligned_cols=319 Identities=20% Similarity=0.262 Sum_probs=231.4
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-+.-.+..|+ |..+.||+|||++++++++...+. |..|-+++|+.-||.|-++.+..++..+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 478999988877777776 999999999999999988877764 7789999999999999999999999887
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC--------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++++++....+....+ .+||+++|...| ++++.... .....+.+.||||+|.++ +..
T Consensus 149 -Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred -CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 79999999887777665544 589999999988 44554321 123568899999999643 110
Q ss_pred -------CHHHHHHHHHhCCCC-------------------C--------------------------------------
Q 008443 286 -------FEPQIREVMQNLPDK-------------------H-------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~~-------------------~-------------------------------------- 301 (565)
....+..+...+... .
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 111111111111100 0
Q ss_pred -----------------------------------------------------------------------eEEEEeccc
Q 008443 302 -----------------------------------------------------------------------QTLLFSATM 310 (565)
Q Consensus 302 -----------------------------------------------------------------------~~l~~SAT~ 310 (565)
++.|||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 233444444
Q ss_pred cHHHHHHHHhhcCCCeEEEecCcCCCCCce-EEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHH
Q 008443 311 PVEIEALAQGYLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE 389 (565)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~ 389 (565)
..+-..+.+.|-.+.+ .+.. ..+.... .....+.+...|...+++.+...... +.|+||||+++..++.
T Consensus 386 ~~e~~Ef~~iY~l~vv--~IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~-------g~pvLI~t~si~~se~ 455 (796)
T PRK12906 386 KTEEEEFREIYNMEVI--TIPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAK-------GQPVLVGTVAIESSER 455 (796)
T ss_pred HHHHHHHHHHhCCCEE--EcCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhC-------CCCEEEEeCcHHHHHH
Confidence 3333333222222111 1111 1111000 01123334556777777777655432 2369999999999999
Q ss_pred HHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCc---cCcc-----EEEEcCCCCCccchhhh
Q 008443 390 VSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV---MGVA-----HVVNLDLPKTVEDYVHR 461 (565)
Q Consensus 390 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi---p~v~-----~Vi~~~~~~s~~~~~Q~ 461 (565)
+++.|.+.++++..+|+++...++..+.+.++.|. |+|||+|++||+|| ++|. +||+++.|.|...|.|+
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999999888888888888777 99999999999999 4899 99999999999999999
Q ss_pred hcccccCCCceeEEEEeccccHHH
Q 008443 462 IGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 462 ~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
.||+||.|.+|.+..+++.+|.-+
T Consensus 534 ~GRtGRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 534 RGRSGRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred hhhhccCCCCcceEEEEeccchHH
Confidence 999999999999999999886544
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.5e-27 Score=258.23 Aligned_cols=313 Identities=21% Similarity=0.217 Sum_probs=198.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
...|+|+|+.+........-++|.+|||+|||.+++. +...+... +...+++|..||+++++|+++++++++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~-~A~~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALA-YAWRLIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3589999998865443455689999999999999844 44444443 13467999999999999999999875542
Q ss_pred C-CCceEEEEECCCcHH------------------------HHHHHHhC---CCeEEEECchHHHHHHHc-CCCCCCCce
Q 008443 221 L-DSFKTAIVVGGTNIA------------------------EQRSELRG---GVSIVVATPGRFLDHLQQ-GNTSLSRVS 271 (565)
Q Consensus 221 ~-~~~~~~~~~g~~~~~------------------------~~~~~~~~---~~~Ilv~T~~~l~~~~~~-~~~~~~~~~ 271 (565)
. ....+.+.+|..... +|.....+ -.+|+|||+..++..... ....+..++
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 123456666543311 11110011 268999999888644433 222333344
Q ss_pred ----EEEecchhhhhhCCCHHHHHHHHHhC-CCCCeEEEEeccccHHHHHH-HHhhcCC---------CeEEEecCc---
Q 008443 272 ----FVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEAL-AQGYLTD---------PVQVKVGKV--- 333 (565)
Q Consensus 272 ----~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~-~~~~~~~---------~~~~~~~~~--- 333 (565)
+|||||+|.+- .-....+..+++.+ .....+|+||||+|...... ...|-.. |........
T Consensus 438 La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 89999999652 21223344444433 23456999999999876543 3322111 000000000
Q ss_pred ----CCC----CCceEEEEEEe--ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC---Cc
Q 008443 334 ----SSP----TANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---LH 400 (565)
Q Consensus 334 ----~~~----~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~---~~ 400 (565)
... .......+... ........+++.+.+.... ++++|||||+++.|+.+++.|.+.+ ..
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~-------g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA-------GAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 000 00000001111 1111123344444433221 2359999999999999999999764 67
Q ss_pred eEEecCCCChhhH----HHHHHhh-hcCC---eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCC
Q 008443 401 AVALHGGRNQSDR----ESALRDF-RNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS 470 (565)
Q Consensus 401 ~~~~~~~~~~~~r----~~~~~~f-~~g~---~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~ 470 (565)
+..+||.++..+| +++++.| ++|+ ..|||+|++++.|+|| +++++|....| ...++||+||++|.+.
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999998 4577788 6665 4799999999999999 58999988777 6789999999999875
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.5e-26 Score=244.60 Aligned_cols=148 Identities=20% Similarity=0.329 Sum_probs=127.7
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 008443 124 TDMCLHPSIMKDIE-----FHEYTRP---TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 124 ~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~ 195 (565)
+.+.+.+++.+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|++|++..++. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 45578888888776 5788888 99999999999999999999999999999999999988764 23
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCCCCCC------
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTSLS------ 268 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~~~~------ 268 (565)
.++||+|+++||.|..+.+..+.... ++.+++++||....++...+ .++|+||||++| ++++..+.+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 48999999999999999999998775 68999999999988776555 499999999999 999988755554
Q ss_pred -CceEEEecchhhhh
Q 008443 269 -RVSFVILDEADRML 282 (565)
Q Consensus 269 -~~~~iIiDE~H~~~ 282 (565)
.+.++||||||.++
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 56899999999865
No 100
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=2.6e-27 Score=258.82 Aligned_cols=315 Identities=17% Similarity=0.190 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|++||.+++.++. +|.+.|++..+|.|||+.. +.++..+.... +....+|||||. +++.||.++|.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999886 5678999999999999986 55666554431 123458999994 78899999999997
Q ss_pred hcCCCceEEEEECCCcHHHHHH---HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHH
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
. .+.+..++|......... .....++|+|+|++.+...... +.--.+++|||||+|++.+. .....+.+.
T Consensus 243 p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 243 P---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred C---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 4 456777777644322211 1235689999999998654322 22335889999999998754 333455566
Q ss_pred hCCCCCeEEEEeccccH----HHHHHHHhhcC--------------------------------CCeEEEec--C--cCC
Q 008443 296 NLPDKHQTLLFSATMPV----EIEALAQGYLT--------------------------------DPVQVKVG--K--VSS 335 (565)
Q Consensus 296 ~~~~~~~~l~~SAT~~~----~~~~~~~~~~~--------------------------------~~~~~~~~--~--~~~ 335 (565)
.+.... .+++|+||-. ++..++.-... .++.++.. . ...
T Consensus 316 ~L~a~~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFSTNY-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HhhcCc-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 665554 6889999932 11111110000 00000000 0 000
Q ss_pred CCCceEEEEEEeccc-------------------------------------------------------------hHHH
Q 008443 336 PTANVIQILEKVSEN-------------------------------------------------------------EKVD 354 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~-------------------------------------------------------------~~~~ 354 (565)
+......+...+... .|..
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 111111111111100 1111
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcC---CeeEEEec
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG---STNILVAT 431 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T 431 (565)
.+..++.. ....+.++||||......+.|.++|...++.+..+||+++..+|..+++.|.+. ..-+|++|
T Consensus 475 lLdkLL~~-------Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 475 LLDKLLPK-------LKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHHHHH-------HHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 11111111 112345799999999999999999999999999999999999999999999763 34679999
Q ss_pred cccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
.+.+.|||+..+++||+||++|++....|++||+.|.|+...|.++.
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999987776554
No 101
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.96 E-value=7.2e-28 Score=247.65 Aligned_cols=315 Identities=18% Similarity=0.195 Sum_probs=214.1
Q ss_pred CCCCHHHHHHHHHHh----cCC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~----~~~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
..++.+|..|+..+. +|+ .+|++++||+|||.++ +.++..+++.. .-+++|||+-+.+|+.|.+..|..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-----hhheeeEEechHHHHHHHHHHHHH
Confidence 468999999998775 444 4999999999999997 88888888753 467899999999999999999999
Q ss_pred HHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-----CCCCCCceEEEecchhhhhhCCCHHHHH
Q 008443 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDMGFEPQIR 291 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 291 (565)
+..... ....+.+. ...+.++|.|+|++++....... .+....||+|||||||+.. ...++
T Consensus 238 ~~P~~~--~~n~i~~~--------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~ 303 (875)
T COG4096 238 FLPFGT--KMNKIEDK--------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWS 303 (875)
T ss_pred hCCCcc--ceeeeecc--------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhH
Confidence 886532 22222222 11125799999999998776554 4667789999999999865 55667
Q ss_pred HHHHhCCCCCeEEEEeccccHHHHHHHHhhc-------------------CCCeEEEec----CcCCCCCc---------
Q 008443 292 EVMQNLPDKHQTLLFSATMPVEIEALAQGYL-------------------TDPVQVKVG----KVSSPTAN--------- 339 (565)
Q Consensus 292 ~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-------------------~~~~~~~~~----~~~~~~~~--------- 339 (565)
.|+.+|..- .+++||||.......--.++ .++..+.+. ........
T Consensus 304 ~I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 304 SILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 899998643 45569999764433333333 222211111 00000000
Q ss_pred --e---EEEEEEec------cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-----CCceEE
Q 008443 340 --V---IQILEKVS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-----GLHAVA 403 (565)
Q Consensus 340 --~---~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-----~~~~~~ 403 (565)
+ .+.+...+ -......+...+.++...+ ......+|+||||.+..||+.+.+.|.+. +--+..
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~-~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~ 460 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRG-ATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMK 460 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccc-cCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEE
Confidence 0 00000000 1112333444444443332 22233568999999999999999999875 334667
Q ss_pred ecCCCChhhHHHHHHhhhc--CCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCC-------CceeE
Q 008443 404 LHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG-------SMGQA 474 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g-------~~g~~ 474 (565)
++++-.+. +..++.|.. .-.+|.++++|+..|||+|.|-.+|++..-.|...|.||+||+-|.. +++.-
T Consensus 461 IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~ 538 (875)
T COG4096 461 ITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEF 538 (875)
T ss_pred Eeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCcccccee
Confidence 77765433 445566654 33579999999999999999999999999999999999999999942 33555
Q ss_pred EEEeccc
Q 008443 475 TSFYTDR 481 (565)
Q Consensus 475 ~~~~~~~ 481 (565)
+++++-.
T Consensus 539 F~ifDf~ 545 (875)
T COG4096 539 FTIFDFV 545 (875)
T ss_pred EEEEEhh
Confidence 6666543
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.2e-26 Score=241.02 Aligned_cols=318 Identities=21% Similarity=0.253 Sum_probs=227.9
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+++|.-.--.+.+| -|..++||.|||+++++|++...+. |+.|.||+|+..||.|..+++..++..+
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~l- 150 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFL- 150 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 5778886655555555 4889999999999999999877664 5569999999999999999999999886
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC-CCCC-----CCceEEEecchhhhhhC-C---------
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTSL-----SRVSFVILDEADRMLDM-G--------- 285 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-~~~~-----~~~~~iIiDE~H~~~~~-~--------- 285 (565)
++.++++.++....+... ...++|+++|++.| ++++..+ .... ..+.++||||+|.++-. .
T Consensus 151 Glsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 799999999887654322 23689999999999 8888776 3333 67899999999976421 0
Q ss_pred ------CHHHHHHHHHhCC-------------------CCC---------------------------------------
Q 008443 286 ------FEPQIREVMQNLP-------------------DKH--------------------------------------- 301 (565)
Q Consensus 286 ------~~~~~~~i~~~~~-------------------~~~--------------------------------------- 301 (565)
....+..+...+. .+.
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 1111111111110 001
Q ss_pred -----------------------------------------------------------------------------eEE
Q 008443 302 -----------------------------------------------------------------------------QTL 304 (565)
Q Consensus 302 -----------------------------------------------------------------------------~~l 304 (565)
++.
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 122
Q ss_pred EEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCce-EEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcc
Q 008443 305 LFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 305 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~ 383 (565)
|||+|...+-..+.+-|-.+-+.+ . ...+.... .....+....+|...+++.+.+....+. |+||||.+
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~I--P-Tnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~Gr-------pVLV~t~s 458 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLDTVVV--P-TNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQ-------PVLVGTVS 458 (908)
T ss_pred cccCCChHHHHHHHHHhCCCEEEC--C-CCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCC-------CEEEEeCc
Confidence 233333222222222221111111 0 01111000 1112334556788888887766654332 59999999
Q ss_pred hhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccC---------------------
Q 008443 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--------------------- 442 (565)
Q Consensus 384 ~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~--------------------- 442 (565)
+..++.++..|...++.+..+|+.+.+.++..+.+.|+.|. |+|||+|+++|+||.=
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999851
Q ss_pred ----------------ccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 443 ----------------VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 443 ----------------v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
==+||-...+.|...-.|..||+||.|.+|.+..|++-+|.-+
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 1268888889999999999999999999999999998877644
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=4.6e-27 Score=244.03 Aligned_cols=332 Identities=21% Similarity=0.271 Sum_probs=234.7
Q ss_pred HHHCCCCCCCHHHHHHH--HHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 136 IEFHEYTRPTSIQAQAM--PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~al--~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
.+.+|+..++.||.+++ +.++.+++.+...||+.|||+++.+.++..++.. .+.++++.|..+.+..-...
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceeehhHHHHhh
Confidence 45778999999999998 5677889999999999999999999998888874 55699999999999988888
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc--CCCCCCCceEEEecchhhhhhCCCHHHHH
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLDMGFEPQIR 291 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~--~~~~~~~~~~iIiDE~H~~~~~~~~~~~~ 291 (565)
+..+..+. ++.+..+.|....... ...-++.|||.++-..++.. ..-.++.+++|||||.|.+.+.+.+..++
T Consensus 289 l~~~~~~~-G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE 363 (1008)
T KOG0950|consen 289 LSPFSIDL-GFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE 363 (1008)
T ss_pred hhhhcccc-CCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHH
Confidence 88887765 6788777766544322 23467999999987555433 12346679999999999999988777776
Q ss_pred HHHHhC-----CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCC---ceEEEEEEeccchHH----------
Q 008443 292 EVMQNL-----PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTA---NVIQILEKVSENEKV---------- 353 (565)
Q Consensus 292 ~i~~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------- 353 (565)
.++..+ ....|+||||||+++.- .++.++...++... ....+.. .+...+.........
T Consensus 364 ~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~-fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~ 440 (1008)
T KOG0950|consen 364 LLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTR-FRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSN 440 (1008)
T ss_pred HHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecc-cCcccchhccCCCcccccchhhHHHHHhhhhhhhh
Confidence 665443 34467999999997532 22222222111110 0000000 001111111100000
Q ss_pred ------HHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH-------------------------------
Q 008443 354 ------DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA------------------------------- 396 (565)
Q Consensus 354 ------~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~------------------------------- 396 (565)
+.++..+.+.. ....++||||+++..|+.++..+..
T Consensus 441 ~g~~dpD~~v~L~tet~-------~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 441 LGDEDPDHLVGLCTETA-------PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred cccCCCcceeeehhhhh-------hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 11111111111 1123599999999999887765532
Q ss_pred -------CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cCCCCCccchhhhhccc
Q 008443 397 -------EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LDLPKTVEDYVHRIGRT 465 (565)
Q Consensus 397 -------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~~~~s~~~~~Q~~GRa 465 (565)
....++.+|++++.++|+.+...|++|.+.|++||+.++.|+|+|...++|- -....+...|.||+|||
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 1245788999999999999999999999999999999999999998777763 23446788999999999
Q ss_pred ccCCC--ceeEEEEeccccHHHHHHH
Q 008443 466 GRGGS--MGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 466 gR~g~--~g~~~~~~~~~d~~~~~~l 489 (565)
||+|- .|.+++++...+...+..+
T Consensus 594 GR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 594 GRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhcccccCcceEEEeeccchhHHHHH
Confidence 99975 5999999999887666554
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=1.4e-24 Score=219.66 Aligned_cols=320 Identities=17% Similarity=0.200 Sum_probs=222.7
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.+++||.+.++++. .|-+.|+...+|.|||+.. +.++.++..... -.+..||+||...| ..|.++|++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~----~~GPfLVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG----IPGPFLVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC----CCCCeEEEeeHhhH-HHHHHHHHHhC
Confidence 68999999999986 5678999999999999986 777776665321 12337999997655 56999999997
Q ss_pred hcCCCceEEEEECCCcHHHHHH--H-HhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHH
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRS--E-LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~--~-~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
+++.+.+++|+........ . ..+..+|+|+|++.....-.- +.--++.||||||+|++.+. ...+.++++
T Consensus 241 ---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~--lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr 313 (971)
T KOG0385|consen 241 ---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF--LKKFNWRYLVIDEAHRIKNE--KSKLSKILR 313 (971)
T ss_pred ---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH--HhcCCceEEEechhhhhcch--hhHHHHHHH
Confidence 4678888998864332211 1 235789999999998654221 22235899999999999876 455668888
Q ss_pred hCCCCCeEEEEecccc-HHHHHHHH-----------------hh-----------------------------------c
Q 008443 296 NLPDKHQTLLFSATMP-VEIEALAQ-----------------GY-----------------------------------L 322 (565)
Q Consensus 296 ~~~~~~~~l~~SAT~~-~~~~~~~~-----------------~~-----------------------------------~ 322 (565)
.|.... -|++|+||- +++..+.. .+ +
T Consensus 314 ~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 887665 577888882 11111100 00 0
Q ss_pred CCC--eEEEecC------------------------------------------------cCCCCCceEEEEEEeccchH
Q 008443 323 TDP--VQVKVGK------------------------------------------------VSSPTANVIQILEKVSENEK 352 (565)
Q Consensus 323 ~~~--~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 352 (565)
.+. +.+.++- ...+.+.....-+.+....|
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGK 472 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGK 472 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcc
Confidence 000 0000000 00000000000011122233
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCC---eeEEE
Q 008443 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS---TNILV 429 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vLv 429 (565)
...|-++|..... .+++||||.......+.|.+++--.++....++|.++.++|...++.|.... .-+|+
T Consensus 473 m~vLDkLL~~Lk~-------~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 473 MLVLDKLLPKLKE-------QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred eehHHHHHHHHHh-------CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 3333333333222 2357999999999999999999999999999999999999999999998743 55789
Q ss_pred eccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccH
Q 008443 430 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 430 ~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
+|.+.+.|||+-.+++||.||..|++..-+|...||+|.|+...|.+|-.-.+.
T Consensus 546 STRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 546 STRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred eccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999999999998887776544433
No 105
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4e-25 Score=199.42 Aligned_cols=164 Identities=31% Similarity=0.573 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCc
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
||+|.++++.+.+++++++.||||+|||++|+++++..+.+. +..++++++|+++|+.|..+.+.+++.. .+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSN-TNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccc-ccc
Confidence 689999999999999999999999999999999998877653 2348999999999999999999999876 367
Q ss_pred eEEEEECCCcHH-HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC--CCC
Q 008443 225 KTAIVVGGTNIA-EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKH 301 (565)
Q Consensus 225 ~~~~~~g~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~--~~~ 301 (565)
.+..++++.... .....+.++++|+|+||++|.+.+......+.++++|||||+|++...++...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 888888888755 44445567799999999999999988655777799999999999998888888888888873 358
Q ss_pred eEEEEeccccHHHH
Q 008443 302 QTLLFSATMPVEIE 315 (565)
Q Consensus 302 ~~l~~SAT~~~~~~ 315 (565)
+++++|||++..++
T Consensus 154 ~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 154 QIILLSATLPSNVE 167 (169)
T ss_dssp EEEEEESSSTHHHH
T ss_pred cEEEEeeCCChhHh
Confidence 89999999985554
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.93 E-value=1.1e-23 Score=226.98 Aligned_cols=304 Identities=18% Similarity=0.179 Sum_probs=184.6
Q ss_pred CCCHHHHHHHHHHh----c------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----S------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~------~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~ 212 (565)
-++.+|..|+..+. . .+..+++++||||||++++. ++..++.. ...+++|||||+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~-la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLF-AARKALEL-----LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHH-HHHHHHhh-----cCCCeEEEEECcHHHHHHHHH
Confidence 37889999998764 2 24699999999999998744 44444432 146789999999999999999
Q ss_pred HHHHHHhcCCCceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcC--CCCCCCc-eEEEecchhhhhhCCCHH
Q 008443 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQG--NTSLSRV-SFVILDEADRMLDMGFEP 288 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~--~~~~~~~-~~iIiDE~H~~~~~~~~~ 288 (565)
.|..+.... . .+..+.......+. ....|+|+|.++|...+... .+..... .+||+||||+....
T Consensus 312 ~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---- 380 (667)
T TIGR00348 312 EFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---- 380 (667)
T ss_pred HHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----
Confidence 999875321 1 11122232223332 34789999999997643321 1222222 38999999987532
Q ss_pred HHHHHH-HhCCCCCeEEEEeccccHHH----HHHHHhhcCCCeEEEecCcCCCCCce-EE-EEEE------ecc------
Q 008443 289 QIREVM-QNLPDKHQTLLFSATMPVEI----EALAQGYLTDPVQVKVGKVSSPTANV-IQ-ILEK------VSE------ 349 (565)
Q Consensus 289 ~~~~i~-~~~~~~~~~l~~SAT~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~------~~~------ 349 (565)
.+...+ ..++ +...+||||||-... .......++.++.. ........... .. .+.. +..
T Consensus 381 ~~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 381 ELAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 234444 4565 456999999995421 11111001111111 00000000000 00 0000 000
Q ss_pred ---------------------------------chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH
Q 008443 350 ---------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 350 ---------------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~ 396 (565)
......+...+.++...... ....+++|||.++.+|..+.+.|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~--~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKE--LFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhh--cccCceeEEEecHHHHHHHHHHHHh
Confidence 00011111112222111111 1236799999999999999988866
Q ss_pred C-----CCceEEecCCCChh---------------------hHHHHHHhhhc-CCeeEEEeccccccCCCccCccEEEEc
Q 008443 397 E-----GLHAVALHGGRNQS---------------------DRESALRDFRN-GSTNILVATDVASRGLDVMGVAHVVNL 449 (565)
Q Consensus 397 ~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v~~Vi~~ 449 (565)
. +...+.+++..+.+ ....++++|++ +.++|||+++++..|+|.|.+++++..
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld 616 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD 616 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe
Confidence 4 23455666554332 22478889976 689999999999999999999999998
Q ss_pred CCCCCccchhhhhcccccC
Q 008443 450 DLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 450 ~~~~s~~~~~Q~~GRagR~ 468 (565)
.+..+. .++|.+||+.|.
T Consensus 617 Kplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 617 KPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred cccccc-HHHHHHHHhccc
Confidence 887765 589999999993
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.1e-23 Score=214.60 Aligned_cols=284 Identities=24% Similarity=0.331 Sum_probs=196.9
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
++..-.+|+..|+--...+..|+++-+.||||.|||.--++ +...+.. .|+++++|+||..|+.|+.+.+.+
T Consensus 76 ~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~--~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 76 KKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLL--MSLYLAK------KGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHH--HHHHHHh------cCCeEEEEecCHHHHHHHHHHHHH
Confidence 33333489999999999999999999999999999975432 2223332 478999999999999999999999
Q ss_pred HHhcCCCceEEE-EECCCcHHHH----HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC------
Q 008443 217 LSRSLDSFKTAI-VVGGTNIAEQ----RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG------ 285 (565)
Q Consensus 217 ~~~~~~~~~~~~-~~g~~~~~~~----~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~------ 285 (565)
+........+-. +++....++. .+...++.||+|+|.+-|...... +.--+|++|++|.+|.++..+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDri 225 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRL 225 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHH
Confidence 986654333333 4444343332 223346899999998888655543 222479999999999655321
Q ss_pred -----CHHH-----------------------HHHHHHh--------CCCCCeEEEEeccccHHH--HHHHHhhcCCCeE
Q 008443 286 -----FEPQ-----------------------IREVMQN--------LPDKHQTLLFSATMPVEI--EALAQGYLTDPVQ 327 (565)
Q Consensus 286 -----~~~~-----------------------~~~i~~~--------~~~~~~~l~~SAT~~~~~--~~~~~~~~~~~~~ 327 (565)
|... +++++.. -....+++..|||....- ..+...+++
T Consensus 226 L~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg---- 301 (1187)
T COG1110 226 LRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG---- 301 (1187)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----
Confidence 1110 0111111 112346899999974321 223333332
Q ss_pred EEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcc---hhhHHHHHHHHHHCCCceEEe
Q 008443 328 VKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER---KTRCDEVSEALVAEGLHAVAL 404 (565)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~---~~~a~~l~~~l~~~~~~~~~~ 404 (565)
+.++.......++.+.+......++...+++.+.. -+|||++. ++.+++++++|+.+|+++..+
T Consensus 302 FevG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~-------------GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~ 368 (1187)
T COG1110 302 FEVGSGGEGLRNIVDIYVESESLEKVVELVKKLGD-------------GGLIFVPIDYGREKAEELAEYLRSHGINAELI 368 (1187)
T ss_pred CccCccchhhhheeeeeccCccHHHHHHHHHHhCC-------------CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe
Confidence 33444455556677666655444444444433321 18999999 999999999999999999999
Q ss_pred cCCCChhhHHHHHHhhhcCCeeEEEec----cccccCCCccC-ccEEEEcCCC
Q 008443 405 HGGRNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLP 452 (565)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidip~-v~~Vi~~~~~ 452 (565)
|+. .+..++.|..|++++||++ ..+-+|+|+|. +..+|+++.|
T Consensus 369 ~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 369 HAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 984 3678999999999999998 48899999997 7889999887
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.8e-23 Score=219.96 Aligned_cols=313 Identities=20% Similarity=0.283 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCc
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
+....+.+..+.+..-++|.|+||+|||.. +|.+ +++..- +.+..+.+.-|+|--|..+++++.+.++...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~--lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQF--LLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHH--HHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 344455666777778899999999999986 4432 222211 235568888899988888888888888765455
Q ss_pred eEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh-hhhCCCH-HHHHHHHHhCCCCCe
Q 008443 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFE-PQIREVMQNLPDKHQ 302 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~-~~~~~~~-~~~~~i~~~~~~~~~ 302 (565)
.+++..-..+ ....+..|-++|.+.|++.+..+.. ++.+++|||||+|+ .++.++. ..+..++...+++.+
T Consensus 125 ~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 5655444332 2334578999999999998886544 88999999999994 3333322 234556777777799
Q ss_pred EEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEec-cch-HHHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 008443 303 TLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVS-ENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~lvF 380 (565)
+|.||||+..+ ....++.+.-.+.+..... .+...+.... .+. -...+...+.... . ...+.+|||
T Consensus 198 iIimSATld~~---rfs~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~----~--~~~GdILvF 265 (845)
T COG1643 198 LIIMSATLDAE---RFSAYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHL----R--EGSGSILVF 265 (845)
T ss_pred EEEEecccCHH---HHHHHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhc----c--CCCCCEEEE
Confidence 99999999754 3445666544444433221 2222221222 222 1222222222221 1 224569999
Q ss_pred EcchhhHHHHHHHHHH----CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCC-----
Q 008443 381 VERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL----- 451 (565)
Q Consensus 381 ~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~----- 451 (565)
.+...+.+.+++.|.+ ..+.+..+||.++.++...+++--..|+-+|+++|++++.+|.||+|..||+-+.
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999998 3477899999999999999888877787779999999999999999999997554
Q ss_pred -------------CCCccchhhhhcccccCCCceeEEEEeccccHH
Q 008443 452 -------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 452 -------------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~ 484 (565)
|-|-....||.|||||.+ +|.|+-+|+..+..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 237778899999999985 59999999986554
No 109
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.6e-23 Score=216.73 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|..||.+.+..+-.++.++|+|||.+|||++. +.+++.+++.. ....+|+++|+.+|+.|+...+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRes-----D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRES-----DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhc-----CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 478899999999999999999999999999987 77888888764 466799999999999999999988874322
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc---CCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCC
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ---GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~---~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~ 299 (565)
-.....+.|....+-... .-.|.|+|+-|+.+-..+.. ......+++|||+||+|.+++..-+..+..++...+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 222222333322221111 12599999999999887776 345677899999999999987665556677777764
Q ss_pred CCeEEEEeccccH
Q 008443 300 KHQTLLFSATMPV 312 (565)
Q Consensus 300 ~~~~l~~SAT~~~ 312 (565)
|++|++|||..+
T Consensus 662 -CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 -CPFLVLSATIGN 673 (1330)
T ss_pred -CCeeEEecccCC
Confidence 679999999854
No 110
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.91 E-value=1.9e-23 Score=221.46 Aligned_cols=335 Identities=14% Similarity=0.133 Sum_probs=208.7
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcH----HH
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI----AE 237 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~----~~ 237 (565)
+..+.+|||||.+| +.++...+.. |+++|||+|++.|+.|+.+.|+..|+. ..+..++.+... ..
T Consensus 164 i~~~~~GSGKTevy-l~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRL-AAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHH
Confidence 44445699999999 7777777774 888999999999999999999999852 345566665554 45
Q ss_pred HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-----CHHHHHHHHHhCCCCCeEEEEeccccH
Q 008443 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 238 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-----~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
|.....+..+|||||...++ .++.++++|||||.|.-.... |...-..++.....++.+|+.||||+.
T Consensus 233 w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 66666778999999999999 999999999999999654221 222223334444557889999999998
Q ss_pred HHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEE---eccc--h----HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcc
Q 008443 313 EIEALAQGYLTDPVQVKVGKVSSPTANVIQILEK---VSEN--E----KVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~----~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~ 383 (565)
+....+...................+.+...-.. ...+ . -...+++.+.+....+ ++|||.|+
T Consensus 306 es~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g--------qvll~lnR 377 (665)
T PRK14873 306 EAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG--------PVLVQVPR 377 (665)
T ss_pred HHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC--------cEEEEecC
Confidence 8876655432221111100111111111111100 0000 0 1134555555554333 49999999
Q ss_pred hhhH-----------------------------------------------------------HHHHHHHHHC--CCceE
Q 008443 384 KTRC-----------------------------------------------------------DEVSEALVAE--GLHAV 402 (565)
Q Consensus 384 ~~~a-----------------------------------------------------------~~l~~~l~~~--~~~~~ 402 (565)
+.++ +.+++.|.+. +.++.
T Consensus 378 rGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~ 457 (665)
T PRK14873 378 RGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV 457 (665)
T ss_pred CCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE
Confidence 8876 5555555543 34444
Q ss_pred EecCCCChhhHHHHHHhhhcCCeeEEEecc----ccccCCCccCccEEEEcCCC--CC----------ccchhhhhcccc
Q 008443 403 ALHGGRNQSDRESALRDFRNGSTNILVATD----VASRGLDVMGVAHVVNLDLP--KT----------VEDYVHRIGRTG 466 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~----~~~~Gidip~v~~Vi~~~~~--~s----------~~~~~Q~~GRag 466 (565)
.+++ +.+++.|. ++.+|||+|+ |+. +++++|+.+|.. .+ ...+.|.+||+|
T Consensus 458 r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagrag 524 (665)
T PRK14873 458 TSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVR 524 (665)
T ss_pred EECh-------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhc
Confidence 4443 35788886 5999999999 665 367787666643 22 333489999999
Q ss_pred cCCCceeEEEEeccccHHHHHHH---------HHHHhhhccCCcchhhhhhhHHHHHHHHHHHhcCcccccccccccCCC
Q 008443 467 RGGSMGQATSFYTDRDMLLVAQI---------KKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMGPS 537 (565)
Q Consensus 467 R~g~~g~~~~~~~~~d~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 537 (565)
|.++.|.++++. ..+...++.+ +..+.+++.....+|.................. .......+.++||.
T Consensus 525 r~~~~G~V~iq~-~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i~~~~~~~~~~~~-~~~~~~~~~vlGPv 602 (665)
T PRK14873 525 PRADGGQVVVVA-ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAVDGRPAAVAALLE-AAGLPDGAEVLGPV 602 (665)
T ss_pred CCCCCCEEEEEe-CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEEEEcHHHHHHHHH-HhcCCCCCEEECCc
Confidence 999999999996 5554555444 344555665555554443222111111111111 11123467899986
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.2e-22 Score=213.68 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=112.9
Q ss_pred eccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 347 VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
.....|...++..+......+ .|+||||+++..++.++..|...++++..+|+ .+.+|+..+..|..+...
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~g-------rpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~ 648 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKG-------QPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA 648 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCC-------CCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe
Confidence 345567778877776654322 36999999999999999999999999999997 577999999999999999
Q ss_pred EEEeccccccCCCcc---CccE-----EEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 427 ILVATDVASRGLDVM---GVAH-----VVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 427 vLv~T~~~~~Gidip---~v~~-----Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
|+|||+|++||+||+ .|.. ||.++.|.|...|.|+.||+||.|.+|.+..|++..|..+
T Consensus 649 VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 649 VTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred EEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 999999999999999 5543 4889999999999999999999999999999999877553
No 112
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=6.1e-23 Score=217.61 Aligned_cols=387 Identities=17% Similarity=0.216 Sum_probs=248.8
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh---
Q 008443 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--- 156 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~--- 156 (565)
..|.....+...-...++.+..+-+-...+..+. ..-++...|..+...|..+.. .+|+.+|-+.+++++
T Consensus 314 ~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~-~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W 386 (1373)
T KOG0384|consen 314 CTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGC-KYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSW 386 (1373)
T ss_pred ccccchhhhhhhHHHHHHHHhhhhccccCCCCcc-ccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHH
Confidence 4566666666555666777665543222211111 112233445555555544433 689999999999987
Q ss_pred -cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcH
Q 008443 157 -SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 157 -~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (565)
.++++|++..+|.|||+.. +.++..+...... .|| .|+|||...+ ..|.++|..+. .+++.++.|....
T Consensus 387 ~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~---~gp-flvvvplst~-~~W~~ef~~w~----~mn~i~y~g~~~s 456 (1373)
T KOG0384|consen 387 YKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI---HGP-FLVVVPLSTI-TAWEREFETWT----DMNVIVYHGNLES 456 (1373)
T ss_pred HhcccceehhhcCCCcchHH-HHHHHHHHHhhhc---cCC-eEEEeehhhh-HHHHHHHHHHh----hhceeeeecchhH
Confidence 6788999999999999876 6666666654321 233 7999997555 45999999997 4678888998777
Q ss_pred HHHHHHHh----C-----CCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEE
Q 008443 236 AEQRSELR----G-----GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 236 ~~~~~~~~----~-----~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~ 306 (565)
....+... . ..+++++|++.++..-.. +.--.+.+++|||||++.+. ...+...+..+.-+. -|++
T Consensus 457 r~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rlli 531 (1373)
T KOG0384|consen 457 RQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RLLI 531 (1373)
T ss_pred HHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc-eeee
Confidence 66555442 2 478999999988643221 22235789999999999865 333445567776565 4667
Q ss_pred eccc-cHHHHHHHHhh-cCCCeEE---------------------------------EecCcCCCCCceEEEE-EEeccc
Q 008443 307 SATM-PVEIEALAQGY-LTDPVQV---------------------------------KVGKVSSPTANVIQIL-EKVSEN 350 (565)
Q Consensus 307 SAT~-~~~~~~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~~~~~~~-~~~~~~ 350 (565)
|+|| .+.+..+...+ +..|..+ .-.-....+....+++ ..+..-
T Consensus 532 tgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~l 611 (1373)
T KOG0384|consen 532 TGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDL 611 (1373)
T ss_pred cCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHH
Confidence 7777 33333332111 0111000 0000011111111111 111000
Q ss_pred hH------------------------HHHHHHH------------------------------HHHHHHh----------
Q 008443 351 EK------------------------VDRLLAL------------------------------LVEEAFL---------- 366 (565)
Q Consensus 351 ~~------------------------~~~l~~~------------------------------l~~~~~~---------- 366 (565)
.| .-.++.. +...+..
T Consensus 612 Qk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKL 691 (1373)
T KOG0384|consen 612 QKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKL 691 (1373)
T ss_pred HHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHH
Confidence 00 0000000 0000000
Q ss_pred hhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhc---CCeeEEEeccccccCCCccCc
Q 008443 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 367 ~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vLv~T~~~~~Gidip~v 443 (565)
-.+....+++||||...+...+.|+++|...+++.-.++|....+.|++.++.|.. ..+.+|+||.+.+.|||+-.+
T Consensus 692 L~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatA 771 (1373)
T KOG0384|consen 692 LPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATA 771 (1373)
T ss_pred HHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccccc
Confidence 00112335789999999999999999999999999999999999999999999986 457799999999999999999
Q ss_pred cEEEEcCCCCCccchhhhhcccccCCCceeEEEE--eccc--cHHHHHH
Q 008443 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF--YTDR--DMLLVAQ 488 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~--~~~~--d~~~~~~ 488 (565)
++||+||..|++..-+|...||+|.||...|-+| ++.. +..++.+
T Consensus 772 DTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 772 DTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred ceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 9999999999999999999999999998766544 4433 3444443
No 113
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.91 E-value=4.5e-22 Score=200.67 Aligned_cols=314 Identities=20% Similarity=0.261 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCc
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
..+-.+.+..+...+-++|+|+||+|||.. +| +.+.+.. .. ..+++-+.-|+|--|..++++...-.+...+-
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG-~~--~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAG-FA--SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcc-cc--cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 344456777777888899999999999976 33 3333321 11 12337888899988888888777766554444
Q ss_pred eEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh-hhCC-CHHHHHHHHHhCCCCCe
Q 008443 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMG-FEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~-~~~~-~~~~~~~i~~~~~~~~~ 302 (565)
.++...--.. .......|.++|-+.|++.+..+ -.++.+++||+||||.= +..+ ..-.+++++.. ++..+
T Consensus 126 ~VGY~IRFed------~ts~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lk 197 (674)
T KOG0922|consen 126 EVGYTIRFED------STSKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLK 197 (674)
T ss_pred eeeeEEEecc------cCCCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCce
Confidence 4544433221 12245789999999999887754 34778999999999931 1111 11223444444 34678
Q ss_pred EEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEc
Q 008443 303 TLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~ 382 (565)
+|+||||+..+ ....|+.....+.+.... ..+...+...+..+-.+..+..+.+.+.. .+.+-+|||..
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-----E~~GDILvFLt 266 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLT-----EPPGDILVFLT 266 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHcc-----CCCCCEEEEeC
Confidence 99999999744 445566664444443322 22333333333334444444444333322 23335999999
Q ss_pred chhhHHHHHHHHHHC----C--C--ceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCC---
Q 008443 383 RKTRCDEVSEALVAE----G--L--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL--- 451 (565)
Q Consensus 383 ~~~~a~~l~~~l~~~----~--~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~--- 451 (565)
..++.+.+++.|.+. + . -+..+||.++.++...+.+.--.|.-+|+++|++++..+.||++..||+-+.
T Consensus 267 GqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~ 346 (674)
T KOG0922|consen 267 GQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQ 346 (674)
T ss_pred CHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEE
Confidence 999999999998875 1 1 2467999999999999988888899999999999999999999999997543
Q ss_pred ---------------CCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 452 ---------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 452 ---------------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
|-|...-.||.|||||.| +|.|+-+|+..+...
T Consensus 347 ~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 347 KKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred EeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 346777799999999996 599999999887643
No 114
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.1e-22 Score=201.75 Aligned_cols=328 Identities=18% Similarity=0.199 Sum_probs=221.8
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|.+||++++.++. ++.-.|+...+|.|||... +..+..+...... -+.+||||| ..|..||.++|+.|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~----~~paLIVCP-~Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL----TKPALIVCP-ATIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc----cCceEEEcc-HHHHHHHHHHHHHhC
Confidence 46999999999987 4455899999999999775 5555555554221 245999999 589999999999998
Q ss_pred hcCCCceEEEEECCCcH---------HHHHH----HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC
Q 008443 219 RSLDSFKTAIVVGGTNI---------AEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~---------~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
. .+++..+++.... ..+.. .......|+++|++.+.-. ...+.-..++|+|+||.|++-+..
T Consensus 279 p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 279 P---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred c---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc
Confidence 4 5778888776552 11111 1123467999999877421 112333468999999999988763
Q ss_pred CHHHHHHHHHhCCCCCeEEEEeccc-cHHHHHHHHhh-----------------cCCCeEE-------------------
Q 008443 286 FEPQIREVMQNLPDKHQTLLFSATM-PVEIEALAQGY-----------------LTDPVQV------------------- 328 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~-~~~~~~~~~~~-----------------~~~~~~~------------------- 328 (565)
..+...+..++... -+++|+|| .+.+.++...+ +..|+.+
T Consensus 354 --s~islackki~T~~-RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIRTVH-RIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhccccc-eEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 33444555555444 45667776 22222211100 0000000
Q ss_pred -------------------------------E----------------------ecCcCC-------------CCCceE-
Q 008443 329 -------------------------------K----------------------VGKVSS-------------PTANVI- 341 (565)
Q Consensus 329 -------------------------------~----------------------~~~~~~-------------~~~~~~- 341 (565)
. +..... ..+.+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 0 000000 000000
Q ss_pred -------EE--E-EEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHH-HCCCceEEecCCCCh
Q 008443 342 -------QI--L-EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALHGGRNQ 410 (565)
Q Consensus 342 -------~~--~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~-~~~~~~~~~~~~~~~ 410 (565)
+. + .......|...+..++......+. ++|+|..++...+.|..+|. ..++.++.++|.++.
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~-------rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~ 583 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGD-------RVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPA 583 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCC-------EEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 00 0 111223455566666665554433 59999999999999999999 689999999999999
Q ss_pred hhHHHHHHhhhcCCe-e-EEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEec-----cccH
Q 008443 411 SDRESALRDFRNGST-N-ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-----DRDM 483 (565)
Q Consensus 411 ~~r~~~~~~f~~g~~-~-vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~-----~~d~ 483 (565)
..|..++++|.+++. . +|++|.+.+-|+|+..++.||.|||.|++..-.|..-||.|.|++..|++|-. -++.
T Consensus 584 ~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEk 663 (923)
T KOG0387|consen 584 ALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEK 663 (923)
T ss_pred chhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHH
Confidence 999999999998763 3 67899999999999999999999999999999999999999999877766542 2355
Q ss_pred HHHHHHHH
Q 008443 484 LLVAQIKK 491 (565)
Q Consensus 484 ~~~~~l~~ 491 (565)
.+.+++.+
T Consensus 664 iY~rQI~K 671 (923)
T KOG0387|consen 664 IYHRQIFK 671 (923)
T ss_pred HHHHHHHH
Confidence 56565543
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=7.1e-22 Score=210.25 Aligned_cols=134 Identities=22% Similarity=0.340 Sum_probs=117.0
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEE
Q 008443 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (565)
Q Consensus 350 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (565)
..+...++..+...... +.++||||+++..++.+++.|.+.|+.+..+|+++++.+|.++++.|+.|+++|||
T Consensus 425 ~~qi~~Ll~eI~~~~~~-------g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV 497 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVAR-------NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLV 497 (655)
T ss_pred cchHHHHHHHHHHHHcC-------CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEE
Confidence 44566677777665432 23599999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCccCccEEEEcC-----CCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHH
Q 008443 430 ATDVASRGLDVMGVAHVVNLD-----LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 491 (565)
Q Consensus 430 ~T~~~~~Gidip~v~~Vi~~~-----~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~ 491 (565)
||+.+++|+|+|++++||++| .|.+...|+||+||+||. ..|.++++++..+......+..
T Consensus 498 ~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 498 GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999998 688999999999999998 5799999999877655555543
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.3e-21 Score=197.86 Aligned_cols=319 Identities=22% Similarity=0.227 Sum_probs=223.9
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-+.-.++.|+ +..+.||.|||+++++++....+. |+.|.+++|+..||.|-++++..++..+
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 478999999998888875 779999999999999988877664 7789999999999999999999999886
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC--------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.++++.++....+....+ .+||+++|...| ++++..+. .....+.+.||||+|.++ |..
T Consensus 147 -GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 147 -GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred -CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 79999999888777665555 489999999887 44443321 234568899999999643 110
Q ss_pred ------CHHHHHHHHHhCCCC--------C--------------------------------------------------
Q 008443 286 ------FEPQIREVMQNLPDK--------H-------------------------------------------------- 301 (565)
Q Consensus 286 ------~~~~~~~i~~~~~~~--------~-------------------------------------------------- 301 (565)
....+..+...+.++ .
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 111122222222110 0
Q ss_pred ------------------------------------------------------------eEEEEeccccHHHHHHHHhh
Q 008443 302 ------------------------------------------------------------QTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 302 ------------------------------------------------------------~~l~~SAT~~~~~~~~~~~~ 321 (565)
++.|||+|...+...+.+-|
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 34455555544444443333
Q ss_pred cCCCeEEEecCcCCCCCc-eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCc
Q 008443 322 LTDPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 400 (565)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~ 400 (565)
-.+-. .+. ...+... ......+.....|...+++.+.+....+ .|+||.|.+.+..+.+++.|.+.|++
T Consensus 384 ~l~Vv--~IP-tnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~G-------rPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 384 DLGVS--VIP-PNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETG-------QPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred CCcEE--ECC-CCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcC-------CCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 22211 111 1111110 0011334455677778887777665433 26999999999999999999999999
Q ss_pred eEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccC----------c-----cEEEEcCCCCCccchhhhhccc
Q 008443 401 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG----------V-----AHVVNLDLPKTVEDYVHRIGRT 465 (565)
Q Consensus 401 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~----------v-----~~Vi~~~~~~s~~~~~Q~~GRa 465 (565)
+..+++.....+-+-+-+.=+.| .|.|||+|+++|.||.= | =+||....+.|...-.|..||+
T Consensus 454 h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 454 AVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred ceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 99999875544433333322333 49999999999999852 1 2788888999999999999999
Q ss_pred ccCCCceeEEEEeccccHHH
Q 008443 466 GRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 466 gR~g~~g~~~~~~~~~d~~~ 485 (565)
||.|.+|.+..|++-+|.-+
T Consensus 532 GRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 532 GRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred ccCCCCCceeEEEEcchhHH
Confidence 99999999999998776543
No 117
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=4.1e-22 Score=216.98 Aligned_cols=328 Identities=20% Similarity=0.220 Sum_probs=204.3
Q ss_pred CCHHHHHHHHHHhcC---C-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 144 PTSIQAQAMPVALSG---R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~---~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.++.|..++..+... . .+++.||||.|||++.+.++...+... .....+++++.|++.++.+++++++.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 488999999988743 3 588999999999999977776655442 11477899999999999999999999876
Q ss_pred cCCCceEEEEECCCcHHHHHHHHh---------------CCCeEEEECchHHHHH-HHcCCCC-C--CCceEEEecchhh
Q 008443 220 SLDSFKTAIVVGGTNIAEQRSELR---------------GGVSIVVATPGRFLDH-LQQGNTS-L--SRVSFVILDEADR 280 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~---------------~~~~Ilv~T~~~l~~~-~~~~~~~-~--~~~~~iIiDE~H~ 280 (565)
... .....+.+... ........ .-..+.++|+-..... ....... + -...++|+||+|.
T Consensus 272 ~~~-~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 272 LFS-VIGKSLHSSSK-EPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccc-ccccccccccc-chhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 532 11111222221 11110000 0122333333322221 1111111 0 1246899999998
Q ss_pred hhhCCCHHHHHHHHHhC-CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEE--eccchHHH-HH
Q 008443 281 MLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEK--VSENEKVD-RL 356 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~l 356 (565)
+.+......+..++..+ ..+..+|+||||+|..+.......+.....+..........+-...... ........ ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 87663233333333322 2356799999999999888887776654443332110000000000000 00000000 11
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhh----cCCeeEEEecc
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR----NGSTNILVATD 432 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~ 432 (565)
..... .....+.+++|.|||+..|.++.+.|+..+..+..+||.+...+|.+.++.+. .++..|+|||+
T Consensus 430 ~~~~~-------~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 430 IELIS-------EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred hhcch-------hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 11111 11233457999999999999999999998878999999999999988888654 46788999999
Q ss_pred ccccCCCccCccEEEEcCCCCCccchhhhhcccccCC--CceeEEEEeccccHHHHH
Q 008443 433 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG--SMGQATSFYTDRDMLLVA 487 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~d~~~~~ 487 (565)
+++.|+|+- .+.+|-= +..+...+||+||++|.| ..|.++++......+...
T Consensus 503 VIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~ 556 (733)
T COG1203 503 VIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLK 556 (733)
T ss_pred EEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchh
Confidence 999999984 5555433 344778899999999999 567777777655444333
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=3.4e-20 Score=196.64 Aligned_cols=319 Identities=22% Similarity=0.259 Sum_probs=218.2
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.-.--.+..| -|..+.||.|||+++.++++...+. |..|.+++|+..||.|-++.+..++..+
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 46788887666666555 4889999999999999998876664 7789999999999999999999999886
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC--------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++++++....+....+. ++|++||..-| ++++..+. .....+.++||||+|.++ |..
T Consensus 151 -Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 151 -GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred -CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 799999998887776655554 99999999987 55554431 123679999999999753 210
Q ss_pred -------CHHHHHHHHHhCCC--------------------CC-------------------------------------
Q 008443 286 -------FEPQIREVMQNLPD--------------------KH------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~--------------------~~------------------------------------- 301 (565)
....+..+...+.. ..
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 11111111111100 00
Q ss_pred ------------------------------------------------------------------------------eE
Q 008443 302 ------------------------------------------------------------------------------QT 303 (565)
Q Consensus 302 ------------------------------------------------------------------------------~~ 303 (565)
++
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 22
Q ss_pred EEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcc
Q 008443 304 LLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (565)
Q Consensus 304 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~ 383 (565)
.|||+|...+-..+.+-|-.+-+.+.... .....+. ....+.+...|...+++.+.+....+ .|+||-+.|
T Consensus 388 sGMTGTa~te~~Ef~~iY~l~Vv~IPTnk-P~~R~D~-~d~vy~t~~eK~~Ai~~ei~~~~~~G-------rPVLVGT~S 458 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGLDVVVIPPNK-PLARKDF-NDLVYLTAEEKYAAIITDIKECMALG-------RPVLVGTAT 458 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEEECCCCC-CcccccC-CCeEEcCHHHHHHHHHHHHHHHHhCC-------CCEEEEeCC
Confidence 33344433333333222222111111000 0000111 11244556778888888877665433 269999999
Q ss_pred hhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcC-CeeEEEeccccccCCCcc---------------------
Q 008443 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNILVATDVASRGLDVM--------------------- 441 (565)
Q Consensus 384 ~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidip--------------------- 441 (565)
++..+.++..|...+++.-++++.....+-+-+- +.| .-.|.|||+|++||.||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~ 535 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIA 535 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHH
Confidence 9999999999999999988888875544333333 334 235999999999999994
Q ss_pred -----------Cc-----cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 442 -----------GV-----AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 442 -----------~v-----~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
.| =+||-...+.|...-.|..||+||.|.+|.+-.|++-+|..+
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 11 278888889999999999999999999999999998776543
No 119
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=4.6e-20 Score=193.13 Aligned_cols=324 Identities=15% Similarity=0.159 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHhc---CC-------CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHH
Q 008443 143 RPTSIQAQAMPVALS---GR-------DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~---~~-------~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~ 212 (565)
.++|+|++++..+.. |. .+|++-.+|+|||+.. +.++..++++.+...+.-.+.|||+| ..|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHH
Confidence 479999999998862 22 3788999999999996 88999999987654444577999999 699999999
Q ss_pred HHHHHHhcCCCceEEEEECCCcHHHHHH---HH-----hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC
Q 008443 213 EVKALSRSLDSFKTAIVVGGTNIAEQRS---EL-----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 284 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~ 284 (565)
+|.+|.... .+..-.+++.... .|.. .+ .-..-|++.+++++.+.... +....++++|+||.|++-+.
T Consensus 316 EF~KWl~~~-~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 316 EFGKWLGNH-RINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHhcccc-ccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch
Confidence 999998742 4555556666553 1111 11 12356888999999766654 55667999999999998765
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEecccc-HHHHHHHHh-------------------------------------------
Q 008443 285 GFEPQIREVMQNLPDKHQTLLFSATMP-VEIEALAQG------------------------------------------- 320 (565)
Q Consensus 285 ~~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~~~~~~~------------------------------------------- 320 (565)
...+...+..+.-.. -|++|+||- +++.+....
T Consensus 392 --~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 --DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred --hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 444566666665444 577899982 222111100
Q ss_pred ----hcCCCeEEEec-CcCCCCCceEEEEEEeccchHHHHHHHHHHHH--------------------------------
Q 008443 321 ----YLTDPVQVKVG-KVSSPTANVIQILEKVSENEKVDRLLALLVEE-------------------------------- 363 (565)
Q Consensus 321 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------------------------------- 363 (565)
+....+..+.+ ......+........+........++..+...
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 00000000000 00001111112222222222111111111111
Q ss_pred ---------------------------------------HHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEe
Q 008443 364 ---------------------------------------AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVAL 404 (565)
Q Consensus 364 ---------------------------------------~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~ 404 (565)
....++ ...++.+..|.+...+.+...++-.|+.+..+
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek---~~~~~v~Isny~~tldl~e~~~~~~g~~~~rL 625 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREK---LLVKSVLISNYTQTLDLFEQLCRWRGYEVLRL 625 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhh---cceEEEEeccHHHHHHHHHHHHhhcCceEEEE
Confidence 000000 00123333344445566666666679999999
Q ss_pred cCCCChhhHHHHHHhhhcCC---eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 405 HGGRNQSDRESALRDFRNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 405 ~~~~~~~~r~~~~~~f~~g~---~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
||.++..+|+.+++.|.+.. .-+|.++.+.++||++-+++.||++|++|++..-.|.++|+.|.||+..|++|-
T Consensus 626 dG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 626 DGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred cCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 99999999999999999744 336778899999999999999999999999999999999999999999888775
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.5e-20 Score=184.13 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=115.4
Q ss_pred EeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCe
Q 008443 346 KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
.-+....++.++..+.+....++ ++||-+-+++.|+.|.++|.+.|+++..+|++...-+|.++++.++.|++
T Consensus 425 vRp~~~QvdDL~~EI~~r~~~~e-------RvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~ 497 (663)
T COG0556 425 VRPTKGQVDDLLSEIRKRVAKNE-------RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF 497 (663)
T ss_pred eecCCCcHHHHHHHHHHHHhcCC-------eEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCc
Confidence 33456677888888887766554 59999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccccCCCccCccEEEEcCCC-----CCccchhhhhcccccCCCceeEEEEeccccHH
Q 008443 426 NILVATDVASRGLDVMGVAHVVNLDLP-----KTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip~v~~Vi~~~~~-----~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~ 484 (565)
+|||+.+.+-+|+|+|.|.+|..+|.. .|-...+|-+|||.|.- .|.|+++.+.--..
T Consensus 498 DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~iT~s 560 (663)
T COG0556 498 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADKITDS 560 (663)
T ss_pred cEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchhhhHH
Confidence 999999999999999999999888865 58888999999999974 49999998764333
No 121
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=1.6e-20 Score=199.83 Aligned_cols=320 Identities=18% Similarity=0.202 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
..+.++.+.+..+.+...++|.|.||+|||...---+++...... ...++++--|+|--|.-+++++..--....
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 346788888999988889999999999999876455555555442 355678888998877777777765443333
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh-hhhCCCHHHHHHHHHhCCCCC
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~-~~~~~~~~~~~~i~~~~~~~~ 301 (565)
+-.++.-.+..+ .......+++||.+.|++.+.. ...+..+..||+||+|. -.+.+|.-.+.+.+-..+++.
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 444555444432 2223478999999999998877 45677899999999994 334556555555555666899
Q ss_pred eEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCc----------------eEEE------------EEEeccchHH
Q 008443 302 QTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTAN----------------VIQI------------LEKVSENEKV 353 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~------------~~~~~~~~~~ 353 (565)
++|+||||...+ ....|++....+.+.....+... ..+. ......+ -.
T Consensus 321 kvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-id 396 (924)
T KOG0920|consen 321 KVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE-ID 396 (924)
T ss_pred eEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc-cc
Confidence 999999999744 34445554444433221111000 0000 0000011 11
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-------CCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
..++..+..+.... ...+.+|||.+...++..+.+.|... .+-+..+|+.++..+.+.+.+.--.|..+
T Consensus 397 ~~Li~~li~~I~~~----~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 397 YDLIEDLIEYIDER----EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred HHHHHHHHHhcccC----CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 23333333433332 33457999999999999999998652 25677899999999999999999999999
Q ss_pred EEEeccccccCCCccCccEEEEcC--------CCC----------CccchhhhhcccccCCCceeEEEEeccccH
Q 008443 427 ILVATDVASRGLDVMGVAHVVNLD--------LPK----------TVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~--------~~~----------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
|+++|.+++..|.|++|-.||+.+ +-. |...-.||.|||||. +.|.|+-+|+...+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 999999999999999999999744 322 566669999999998 67999999986543
No 122
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.87 E-value=4.2e-20 Score=178.87 Aligned_cols=320 Identities=16% Similarity=0.188 Sum_probs=215.4
Q ss_pred CCCCHHHHHHHHHHh-cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 142 TRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~-~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..|-|+|.+.+...+ .|..+++...+|.|||+.+ +.+......+++ .||||| ..+.-.|.+.+.++++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyraEwp--------lliVcP-AsvrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRAEWP--------LLIVCP-ASVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhhcCc--------EEEEec-HHHhHHHHHHHHHhccc
Confidence 456899999998765 6778999999999999997 666666665432 899999 47778899999999976
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
... +.++.++...-. .+.....|.|.+++.+..+... +.-..+++||+||.|++.+.. ....+.++..++..
T Consensus 267 ~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 533 333444432111 2233467999999988655432 333458999999999886542 34466666666656
Q ss_pred CeEEEEecccc----HHH---------------HHHHHhhcCCC---eEEEecC------------------------cC
Q 008443 301 HQTLLFSATMP----VEI---------------EALAQGYLTDP---VQVKVGK------------------------VS 334 (565)
Q Consensus 301 ~~~l~~SAT~~----~~~---------------~~~~~~~~~~~---~~~~~~~------------------------~~ 334 (565)
.++|++|+||. .++ .++..+|+.-. ....... ..
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999993 222 22333343211 0111000 00
Q ss_pred CCCCceEEEEEEec--cchHHHHHHHH-------------------------------HHHHHHhh-hccCCCCCeEEEE
Q 008443 335 SPTANVIQILEKVS--ENEKVDRLLAL-------------------------------LVEEAFLA-EKSCHPFPLTIVF 380 (565)
Q Consensus 335 ~~~~~~~~~~~~~~--~~~~~~~l~~~-------------------------------l~~~~~~~-~~~~~~~~~~lvF 380 (565)
..++....+..... .......++.. ..++.... .....+..+.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 01111111111111 01111111110 11111110 0012345589999
Q ss_pred EcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcC-CeeE-EEeccccccCCCccCccEEEEcCCCCCccch
Q 008443 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNI-LVATDVASRGLDVMGVAHVVNLDLPKTVEDY 458 (565)
Q Consensus 381 ~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~ 458 (565)
|......+.+...++++++..+.++|..+..+|....+.|+.. ++.| +++..+.+.|+++...+.|++...++++...
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 9999999999999999999999999999999999999999865 4554 5577888999999999999999999999999
Q ss_pred hhhhcccccCCCceeEEEEec
Q 008443 459 VHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 459 ~Q~~GRagR~g~~g~~~~~~~ 479 (565)
+|.-.|++|.|+...|.++|.
T Consensus 579 lQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred EechhhhhhccccceeeEEEE
Confidence 999999999999877766664
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=1.8e-19 Score=200.49 Aligned_cols=336 Identities=20% Similarity=0.247 Sum_probs=203.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHH----HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~----~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
+++.+.+.+...|+. +++.|.++++ .+.+++++++.||||+|||++|++|++.... ++++++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 334566666677775 8999998766 4457788999999999999999999887654 25679999999
Q ss_pred hhhHHHHHH-HHHHHHhcCC-CceEEEEECCCcH--------------------------------------HH------
Q 008443 204 RELAQQIEK-EVKALSRSLD-SFKTAIVVGGTNI--------------------------------------AE------ 237 (565)
Q Consensus 204 ~~L~~Q~~~-~~~~~~~~~~-~~~~~~~~g~~~~--------------------------------------~~------ 237 (565)
++|..|+.. .+..+.+..+ .+.+..+.|+.+. .+
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 3444332211 3555555553321 00
Q ss_pred ----H-----------------------HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-----
Q 008443 238 ----Q-----------------------RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG----- 285 (565)
Q Consensus 238 ----~-----------------------~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~----- 285 (565)
| .+.....++|||+...-|+..+......+...+++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0 00112347899999998887765443334556899999999875310
Q ss_pred --C-----HHH----------------------------------------------------------------HHHHH
Q 008443 286 --F-----EPQ----------------------------------------------------------------IREVM 294 (565)
Q Consensus 286 --~-----~~~----------------------------------------------------------------~~~i~ 294 (565)
+ ... +...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 00000
Q ss_pred Hh-----------C-------------------------------------CCCCeEEEEeccccH--HHHHHHHhhcCC
Q 008443 295 QN-----------L-------------------------------------PDKHQTLLFSATMPV--EIEALAQGYLTD 324 (565)
Q Consensus 295 ~~-----------~-------------------------------------~~~~~~l~~SAT~~~--~~~~~~~~~~~~ 324 (565)
.. + +....+|++|||+.. ....+...+...
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 001257889999863 223333222211
Q ss_pred Ce-EEEecCcCCCCCceEEEEE--Eec------cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHH
Q 008443 325 PV-QVKVGKVSSPTANVIQILE--KVS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (565)
Q Consensus 325 ~~-~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~ 395 (565)
.. .............-..++. ... ...-...+...+.+.... ..+++|||+++....+.+++.|.
T Consensus 622 ~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~------~~g~~LVlftS~~~l~~v~~~L~ 695 (850)
T TIGR01407 622 DVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI------TSPKILVLFTSYEMLHMVYDMLN 695 (850)
T ss_pred ccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHHHHHHh
Confidence 11 1111100001000011111 111 111222334444333221 12369999999999999999997
Q ss_pred H----CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCcc--EEEEcCCCCC---------------
Q 008443 396 A----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA--HVVNLDLPKT--------------- 454 (565)
Q Consensus 396 ~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~--~Vi~~~~~~s--------------- 454 (565)
. .++.+ +..+.. ..|..++++|++|+..||+||+.+.+|||+|+.. .||+...|..
T Consensus 696 ~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~ 772 (850)
T TIGR01407 696 ELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLE 772 (850)
T ss_pred hhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 5 23333 333333 5789999999999999999999999999999866 4577776632
Q ss_pred ---------------ccchhhhhcccccCCCceeEEEEeccc
Q 008443 455 ---------------VEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 455 ---------------~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
...+.|.+||.-|...+.-++++++.+
T Consensus 773 ~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 773 QEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 122389999999988766667777655
No 124
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2.5e-20 Score=186.19 Aligned_cols=316 Identities=19% Similarity=0.235 Sum_probs=213.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
....+++-.+.+.++....-++|.|+||||||.. +| +++.+.. +. ..|+++-+.-|++--|..++.+..+-++.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaG-yt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAG-YT-KGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcc-cc-cCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 3445667778888888888899999999999986 44 3333322 11 13555777889999888888877766543
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh-hhhCCCHHHHHHHHHhCCC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEPQIREVMQNLPD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~-~~~~~~~~~~~~i~~~~~~ 299 (565)
.-+-.++.-+--+. ......-|=++|.++|++.+... ..+..+.+|||||||. -+..+..-.+.+=+..+++
T Consensus 337 kLG~eVGYsIRFEd------cTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 337 KLGHEVGYSIRFED------CTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred ccccccceEEEecc------ccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 21222222221111 11233557799999998776543 5677899999999993 1222212222333455678
Q ss_pred CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 008443 300 KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lv 379 (565)
..++|++|||+..+ -...|+.+.-.+.+.... ..+...+...+..+-.+..+..+.+... ..+.+-+||
T Consensus 410 dLKllIsSAT~DAe---kFS~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~-----tqp~GDILV 478 (902)
T KOG0923|consen 410 DLKLLISSATMDAE---KFSAFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHL-----TQPLGDILV 478 (902)
T ss_pred cceEEeeccccCHH---HHHHhccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEe-----ccCCccEEE
Confidence 89999999999754 344466654444433222 2233334444444445544444433322 233455999
Q ss_pred EEcchhhHHHHHHHHHHC---------CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcC
Q 008443 380 FVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 380 F~~~~~~a~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~ 450 (565)
|....++.+.+.+.|... .+-+..+|+.++.+.+..+++---.|.-+|++||++++..+.|++|..||+-+
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpG 558 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPG 558 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCc
Confidence 999999888777777653 34577899999999999998888889999999999999999999999999644
Q ss_pred C------------------CCCccchhhhhcccccCCCceeEEEEeccc
Q 008443 451 L------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 451 ~------------------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
+ |.|...-.||+|||||.|. |.|+-+|+..
T Consensus 559 f~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP-GKCfRLYt~~ 606 (902)
T KOG0923|consen 559 FVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP-GKCFRLYTAW 606 (902)
T ss_pred cccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC-CceEEeechh
Confidence 3 3467777999999999975 9999999844
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=6.2e-20 Score=197.10 Aligned_cols=125 Identities=23% Similarity=0.333 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEe
Q 008443 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
.+...++..+...... +.++||||+++..|+.+++.|...|+.+..+||++++.+|..+++.|+.|++.||||
T Consensus 430 ~q~~~L~~~L~~~~~~-------g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~ 502 (652)
T PRK05298 430 GQVDDLLSEIRKRVAK-------GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (652)
T ss_pred ccHHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEE
Confidence 4456666666655432 235999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccCccEEEEcCC-----CCCccchhhhhcccccCCCceeEEEEeccccH
Q 008443 431 TDVASRGLDVMGVAHVVNLDL-----PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~-----~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
|+.+++|+|+|++++||++|. |.+...|+||+||+||. ..|.++++++..+.
T Consensus 503 t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 503 INLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred eCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 999999999999999999885 67899999999999996 68999999985433
No 126
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.86 E-value=1.2e-20 Score=199.68 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=212.2
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHH--HHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQ--HCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~--~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.++.||++.+.++. -+-+.|+|..+|.|||+.. +-++. +..++.....-+..-.||||| ..|+.-|..++.+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQt-icilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQT-ICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHH-HHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHH
Confidence 47899999999885 2336899999999999886 33332 222221111222333899999 5899999999999
Q ss_pred HHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHh
Q 008443 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
++.. +++..+.|+...+...+..-++.+|+|++++.+.+.... +.-.++.|+|+||-|-+.+. ...+.+.++.
T Consensus 1053 f~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1053 FFPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred hcch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 9864 567777887666665555556789999999998654433 22346889999999987654 4555666666
Q ss_pred CCCCCeEEEEecccc-HHHHHHH---Hhh--------------cCCCe--------------------------------
Q 008443 297 LPDKHQTLLFSATMP-VEIEALA---QGY--------------LTDPV-------------------------------- 326 (565)
Q Consensus 297 ~~~~~~~l~~SAT~~-~~~~~~~---~~~--------------~~~~~-------------------------------- 326 (565)
+..+.+ +.+|+||- +++..+. .-+ +..|+
T Consensus 1126 L~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~L 1204 (1549)
T KOG0392|consen 1126 LRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLL 1204 (1549)
T ss_pred Hhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 666664 66788882 1111000 000 00000
Q ss_pred -------------------EE-----------------------EecCcC-CCCCc-------eE--------EEEEEe-
Q 008443 327 -------------------QV-----------------------KVGKVS-SPTAN-------VI--------QILEKV- 347 (565)
Q Consensus 327 -------------------~~-----------------------~~~~~~-~~~~~-------~~--------~~~~~~- 347 (565)
+. .+.... ..... +. ..+...
T Consensus 1205 RRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~ 1284 (1549)
T KOG0392|consen 1205 RRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP 1284 (1549)
T ss_pred HHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC
Confidence 00 000000 00000 00 000000
Q ss_pred ----------------------ccchHHHHHHHHHHHHHHhhhcc-------CCCCCeEEEEEcchhhHHHHHHHHHHCC
Q 008443 348 ----------------------SENEKVDRLLALLVEEAFLAEKS-------CHPFPLTIVFVERKTRCDEVSEALVAEG 398 (565)
Q Consensus 348 ----------------------~~~~~~~~l~~~l~~~~~~~~~~-------~~~~~~~lvF~~~~~~a~~l~~~l~~~~ 398 (565)
....|...+-+++.+-+...... .-..+++||||.-+..++.+.+.|.+..
T Consensus 1285 ~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~ 1364 (1549)
T KOG0392|consen 1285 VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKY 1364 (1549)
T ss_pred CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhh
Confidence 01112222222222222110000 0135789999999999999988887653
Q ss_pred ---CceEEecCCCChhhHHHHHHhhhcC-CeeEEE-eccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCcee
Q 008443 399 ---LHAVALHGGRNQSDRESALRDFRNG-STNILV-ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 473 (565)
Q Consensus 399 ---~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv-~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~ 473 (565)
+....++|..++.+|.++.++|.++ .++||+ +|.+.+-|+|+.++++||+++-.|++-.-+|.+.||+|.|++..
T Consensus 1365 mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1365 MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 3455899999999999999999998 788765 77999999999999999999999999999999999999999766
Q ss_pred EEEE
Q 008443 474 ATSF 477 (565)
Q Consensus 474 ~~~~ 477 (565)
|.++
T Consensus 1445 VNVy 1448 (1549)
T KOG0392|consen 1445 VNVY 1448 (1549)
T ss_pred eeee
Confidence 6554
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=1.2e-19 Score=168.06 Aligned_cols=186 Identities=44% Similarity=0.619 Sum_probs=146.5
Q ss_pred CCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.++..|+++|.+++..+... +.+++.++||+|||.+++..++..+... ...++||++|+..++.|+.+.+...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG------KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc------CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999988 8999999999999998877777665542 1467999999999999999999998
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCC-eEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHh
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGV-SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
+.... .......++....+......... +++++|++.+.+...........+++|||||+|++....+...+..++..
T Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 78 GPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred hccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 76432 23333444444333333344444 99999999999988887667778999999999999875678888888888
Q ss_pred CCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEec
Q 008443 297 LPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVG 331 (565)
Q Consensus 297 ~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
+.+..+++++||||+.........++.....+...
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 87788899999999988888888887765555444
No 128
>COG4889 Predicted helicase [General function prediction only]
Probab=99.85 E-value=3.7e-21 Score=196.92 Aligned_cols=355 Identities=20% Similarity=0.247 Sum_probs=209.2
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcC----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 131 SIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 131 ~l~~~l~~~~~~~~~~~Q~~al~~l~~~----~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
++..++.-....+|+|+|+.|+++..+| .+.=+++++|+|||+.+ +.+.+.+.. .++|||||.++|
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~---------~~iL~LvPSIsL 218 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA---------ARILFLVPSISL 218 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh---------hheEeecchHHH
Confidence 4455555566779999999999998865 23677899999999997 666666543 569999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCcH--------------------HH----HHH-HHhCCCeEEEECchHHHHHHH
Q 008443 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNI--------------------AE----QRS-ELRGGVSIVVATPGRFLDHLQ 261 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~--------------------~~----~~~-~~~~~~~Ilv~T~~~l~~~~~ 261 (565)
+.|..+.+..--.. .+....++.+... +. +.. ....+--|||+|+|.+...-.
T Consensus 219 LsQTlrew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 219 LSQTLREWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 99988777654321 2333333332211 11 111 112345699999999977666
Q ss_pred cCCCCCCCceEEEecchhhhhhCCCHH----HHHHHH--HhCCCCCeEEEEeccccHHHH--------------------
Q 008443 262 QGNTSLSRVSFVILDEADRMLDMGFEP----QIREVM--QNLPDKHQTLLFSATMPVEIE-------------------- 315 (565)
Q Consensus 262 ~~~~~~~~~~~iIiDE~H~~~~~~~~~----~~~~i~--~~~~~~~~~l~~SAT~~~~~~-------------------- 315 (565)
-...-+..|++||+||||+-..-.+.. .+.++- .++ +..+-+.|||||..-.+
T Consensus 297 AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~ni-Ka~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~ 375 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNI-KAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDEL 375 (1518)
T ss_pred HHHcCCCCccEEEecchhccccceecccCcccceeecCcchh-HHHHhhhcccCchhhchhhhhhhhhccceeeccchhh
Confidence 556778899999999999754211110 000000 000 01235789999932211
Q ss_pred -------------HHHHhhcCCCeEEEecCcCCCCCceEEE-EEEe------ccchHHHHHHHHHHHHHHhhh------c
Q 008443 316 -------------ALAQGYLTDPVQVKVGKVSSPTANVIQI-LEKV------SENEKVDRLLALLVEEAFLAE------K 369 (565)
Q Consensus 316 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~l~~~l~~~~~~~~------~ 369 (565)
+....++.+...+...-.........+. .... ..-.+..-...-+.++..... .
T Consensus 376 ~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~ 455 (1518)
T COG4889 376 TFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKA 455 (1518)
T ss_pred hhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcC
Confidence 1111122222111111111100000000 0000 011111112222222211100 0
Q ss_pred cCCCCCeEEEEEcchhhHHHHHHHHHH---------------CCCceEEecCCCChhhHHHHHH---hhhcCCeeEEEec
Q 008443 370 SCHPFPLTIVFVERKTRCDEVSEALVA---------------EGLHAVALHGGRNQSDRESALR---DFRNGSTNILVAT 431 (565)
Q Consensus 370 ~~~~~~~~lvF~~~~~~a~~l~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~g~~~vLv~T 431 (565)
...+..++|-||.+.+....+++.|.. ..+.+--++|.|+-.+|...+. .|...+++||--.
T Consensus 456 d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNa 535 (1518)
T COG4889 456 DTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNA 535 (1518)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccc
Confidence 112234689999998888777766643 1234455678999888865554 4466789999999
Q ss_pred cccccCCCccCccEEEEcCCCCCccchhhhhcccccCCC---ceeEEEEe-------------ccccHHHHHHHHHHHhh
Q 008443 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS---MGQATSFY-------------TDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~---~g~~~~~~-------------~~~d~~~~~~l~~~~~~ 495 (565)
..+++|||+|.++.||++++-.+..+.+|.+||.-|..+ .|..++=+ ++.....++++.+.+..
T Consensus 536 RcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRS 615 (1518)
T COG4889 536 RCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRS 615 (1518)
T ss_pred hhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999543 24433221 23345556666666654
Q ss_pred hcc
Q 008443 496 AES 498 (565)
Q Consensus 496 ~~~ 498 (565)
.++
T Consensus 616 hD~ 618 (1518)
T COG4889 616 HDE 618 (1518)
T ss_pred cCH
Confidence 443
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.5e-18 Score=182.16 Aligned_cols=318 Identities=18% Similarity=0.215 Sum_probs=218.7
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-.--.+..|+ |.-+.||-|||+++.+|+.-..+. |+.|-||+...-||..-.+++..++..+
T Consensus 77 ~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 378889988777776664 899999999999999988765554 6779999999999999999999998876
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC--------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~-------- 285 (565)
++.+++...+....+..... .+||+++|...| ++++.... .-...+.|.||||+|.++ +..
T Consensus 147 -GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 147 -GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred -CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 78999888877766654444 499999999988 55655432 224568899999999643 110
Q ss_pred -------CHHHHHHHHHhCCC-------CC--------------------------------------------------
Q 008443 286 -------FEPQIREVMQNLPD-------KH-------------------------------------------------- 301 (565)
Q Consensus 286 -------~~~~~~~i~~~~~~-------~~-------------------------------------------------- 301 (565)
.......+...+.. ..
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 11111222222211 00
Q ss_pred -----------------------------------------------------------eEEEEeccccHHHHHHHHhhc
Q 008443 302 -----------------------------------------------------------QTLLFSATMPVEIEALAQGYL 322 (565)
Q Consensus 302 -----------------------------------------------------------~~l~~SAT~~~~~~~~~~~~~ 322 (565)
++.|||+|...+-..+.+-|-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 234455554433333333332
Q ss_pred CCCeEEEecCcCCCCCceE-EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCce
Q 008443 323 TDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (565)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~ 401 (565)
.+-+.+ . ...+..... ....+.....|...+++.+.+.... +.|+||.|.+.+.++.+++.|.+.|++.
T Consensus 384 l~Vv~I--P-TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~-------gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 384 MRVNVV--P-TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK-------GQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred CCEEEC--C-CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 221111 1 111111010 1123345567777777777665533 2369999999999999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhhcC-CeeEEEeccccccCCCccCcc--------EEEEcCCCCCccchhhhhcccccCCCce
Q 008443 402 VALHGGRNQSDRESALRDFRNG-STNILVATDVASRGLDVMGVA--------HVVNLDLPKTVEDYVHRIGRTGRGGSMG 472 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidip~v~--------~Vi~~~~~~s~~~~~Q~~GRagR~g~~g 472 (565)
..+++.....+-. ++. +.| .-.|.|||+|++||.||.--. +||....+.|...-.|..||+||.|.+|
T Consensus 454 ~vLNAk~~e~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQNAREAE-IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccchhhHHH-HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 9999864433322 222 445 346999999999999995322 8899999999999999999999999999
Q ss_pred eEEEEeccccHHH
Q 008443 473 QATSFYTDRDMLL 485 (565)
Q Consensus 473 ~~~~~~~~~d~~~ 485 (565)
.+-.|++-.|.-+
T Consensus 531 ss~f~lSLeD~L~ 543 (925)
T PRK12903 531 ESRFFISLDDQLF 543 (925)
T ss_pred cceEEEecchHHH
Confidence 9999988776544
No 130
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.9e-19 Score=179.18 Aligned_cols=379 Identities=21% Similarity=0.244 Sum_probs=223.6
Q ss_pred HHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE
Q 008443 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 149 ~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~--~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
++++++|.++--+||||.||||||.. +| +++.+.. ......+.-+=|.-|+|--+.-++++...-++.+ +-.+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccce
Confidence 45566665556689999999999976 33 2233321 1111123345566699877777776666555443 2333
Q ss_pred EEE--ECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhh-hCC----CHHHHHHHHHhCCC
Q 008443 227 AIV--VGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMG----FEPQIREVMQNLPD 299 (565)
Q Consensus 227 ~~~--~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~-~~~----~~~~~~~i~~~~~~ 299 (565)
++. +.+ .......|.|+|-+.|++.+..+ +.+..+..|||||||.=. +.+ ....+..+......
T Consensus 337 sYqIRfd~--------ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 337 SYQIRFDG--------TIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred eEEEEecc--------ccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 333 333 23456889999999999887754 567889999999999421 111 11222222222211
Q ss_pred ------CCeEEEEeccccHHHHHHHHhhcCC-CeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCC
Q 008443 300 ------KHQTLLFSATMPVEIEALAQGYLTD-PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 300 ------~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 372 (565)
..++|+||||+......-.+.++.. |-.+.+.... ..+. .++......+++.+...+......+ -
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ---fPVs---IHF~krT~~DYi~eAfrKtc~IH~k--L 479 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ---FPVS---IHFNKRTPDDYIAEAFRKTCKIHKK--L 479 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc---CceE---EEeccCCCchHHHHHHHHHHHHhhc--C
Confidence 4569999999965433222333322 2233332221 1122 2222222335555555554443333 4
Q ss_pred CCCeEEEEEcchhhHHHHHHHHHHC-------------------------------------------------------
Q 008443 373 PFPLTIVFVERKTRCDEVSEALVAE------------------------------------------------------- 397 (565)
Q Consensus 373 ~~~~~lvF~~~~~~a~~l~~~l~~~------------------------------------------------------- 397 (565)
|.+-+|||+....+++.|++.|++.
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 5566999999999998888888652
Q ss_pred --------------------------------------------CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc
Q 008443 398 --------------------------------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (565)
Q Consensus 398 --------------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (565)
.+-|..+++-++.+++.++++.--+|.--++|+|++
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 022556667777777788888778888889999999
Q ss_pred cccCCCccCccEEEEcCCC--------C----------CccchhhhhcccccCCCceeEEEEecccc----HHHH-----
Q 008443 434 ASRGLDVMGVAHVVNLDLP--------K----------TVEDYVHRIGRTGRGGSMGQATSFYTDRD----MLLV----- 486 (565)
Q Consensus 434 ~~~Gidip~v~~Vi~~~~~--------~----------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d----~~~~----- 486 (565)
++..+.||+|..||+.+.- . |...--||+|||||.|. |.|+-+|...= +..+
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp-GHcYRLYSSAVf~~~Fe~fS~PEI 718 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP-GHCYRLYSSAVFSNDFEEFSLPEI 718 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC-CceeehhhhHHhhcchhhhccHHH
Confidence 9999999999999976543 2 34444899999999975 99999997642 1111
Q ss_pred -----HHHHHHHhhhccCC--cchhhhhhh-HHHHHHHHHHHhcCcccccccccccCCC---ccchhHHHHHHHh
Q 008443 487 -----AQIKKAIVDAESGN--AVAFATGKV-ARRKEREAAAAQKGATVATSKLSMMGPS---VNIEDKYRFMIAA 550 (565)
Q Consensus 487 -----~~l~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~yr~~~~~ 550 (565)
..+.-.|......+ -++|....- ...++.+......++......++-+|.. +-+.-+|-.+++.
T Consensus 719 lk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~ 793 (1172)
T KOG0926|consen 719 LKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLAT 793 (1172)
T ss_pred hhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHH
Confidence 11222222221111 123333322 2223333333344444444456677775 6667777666654
No 131
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=180.68 Aligned_cols=310 Identities=19% Similarity=0.231 Sum_probs=199.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCc
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
...+.+.+..+..++-++|+|.||||||... .+++++.. +. +..-+-+.-|++.-|..++++...-++..-+-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl----~QyL~edG-Y~--~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQL----AQYLYEDG-YA--DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhh----HHHHHhcc-cc--cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 3345555555656677999999999999763 23344332 11 12234555699999988888888776433233
Q ss_pred eEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh-hhCCCHH-HHHHHHHhCCCCCe
Q 008443 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFEP-QIREVMQNLPDKHQ 302 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~-~~~~~~~-~~~~i~~~~~~~~~ 302 (565)
.+++-+--+. .......|=++|-+.|++..... -.++.+.+||+||||.= ++.+..- .++.++.. +.+.+
T Consensus 431 ~VGYsIRFEd------vT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 431 TVGYSIRFED------VTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred ccceEEEeee------cCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccce
Confidence 3333222111 11234678899999998765543 35778999999999942 2222111 22333333 34788
Q ss_pred EEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEc
Q 008443 303 TLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~ 382 (565)
+|.+|||+... ....|+++.-.+.+.... ..+...+...+.++-+...+........ ..+.+-+|||..
T Consensus 503 liVtSATm~a~---kf~nfFgn~p~f~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ihl-----~~~~GdilIfmt 571 (1042)
T KOG0924|consen 503 LIVTSATMDAQ---KFSNFFGNCPQFTIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIHL-----SGPPGDILIFMT 571 (1042)
T ss_pred EEEeeccccHH---HHHHHhCCCceeeecCCc---cceEEEeccCchHHHHHHHHhhheEeec-----cCCCCCEEEecC
Confidence 99999999643 333455543334333222 2233333333333433333333222211 123345999998
Q ss_pred chhhHH----HHHHHHHHC------CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCC-
Q 008443 383 RKTRCD----EVSEALVAE------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL- 451 (565)
Q Consensus 383 ~~~~a~----~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~- 451 (565)
..+..+ .+.+.|.+. ++.+..+++.++.+.+.++++....|.-+++|+|++++..+.+|++.+||..+.
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 877654 444444443 578899999999999999998888899999999999999999999999997654
Q ss_pred -----------------CCCccchhhhhcccccCCCceeEEEEeccc
Q 008443 452 -----------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 452 -----------------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
|.|...--||.|||||.| +|.|+-+|+..
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 446677799999999997 49999999864
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.84 E-value=1.5e-19 Score=184.31 Aligned_cols=317 Identities=17% Similarity=0.212 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|.+||.-.+.++. ++-+.|++..+|.|||... +..+..+.+... +|| -|||||...| ..|.++|.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~----~gp-HLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN----PGP-HLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC----CCC-cEEEecchhH-HHHHHHHHHhC
Confidence 48899999999875 4457899999999999875 777776666431 344 6999997665 56999999998
Q ss_pred hcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHH-cCCCCCCCceEEEecchhhhhhCCCHHHHHHH
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~-~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i 293 (565)
+.+.+..++|........+.. ..+++|+++|+.....--. +..+.-.+|+|+|+||.|.+.+.. ...|+.+
T Consensus 472 ---Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 472 ---PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred ---CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 468899999987554433332 1368999999987631111 111233468999999999887764 3445555
Q ss_pred HHhCCCCCeEEEEeccc-cHHHHHHHHh---------------------------------------------hc-----
Q 008443 294 MQNLPDKHQTLLFSATM-PVEIEALAQG---------------------------------------------YL----- 322 (565)
Q Consensus 294 ~~~~~~~~~~l~~SAT~-~~~~~~~~~~---------------------------------------------~~----- 322 (565)
+..- .+. -|++|+|| .+++.+++.. .+
T Consensus 548 M~I~-An~-RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 MSIN-ANF-RLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred cccc-ccc-eEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 5433 344 57788888 2221111110 00
Q ss_pred -----------CCCe-EEEe----------------------cCcCCC--CCc--eE----------EEEEE--------
Q 008443 323 -----------TDPV-QVKV----------------------GKVSSP--TAN--VI----------QILEK-------- 346 (565)
Q Consensus 323 -----------~~~~-~~~~----------------------~~~~~~--~~~--~~----------~~~~~-------- 346 (565)
.+.. .+.. ...... ... +. -++..
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 0000 0000 000000 000 00 00000
Q ss_pred ---------------------------------------------------eccchHHHHHHHHHHHHHHhhhccCCCCC
Q 008443 347 ---------------------------------------------------VSENEKVDRLLALLVEEAFLAEKSCHPFP 375 (565)
Q Consensus 347 ---------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 375 (565)
.-...|...|-.+|.+. ...+.
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~-------k~~G~ 778 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKI-------KKKGD 778 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHH-------hhcCC
Confidence 00011112222222211 12235
Q ss_pred eEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCC-e-eEEEeccccccCCCccCccEEEEcCCCC
Q 008443 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-T-NILVATDVASRGLDVMGVAHVVNLDLPK 453 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vLv~T~~~~~Gidip~v~~Vi~~~~~~ 453 (565)
++|||..-....+.|...|...++....++|.+.-..|+.+++.|...+ + -+|++|.+.+-|||+..+++||.+|...
T Consensus 779 RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dF 858 (941)
T KOG0389|consen 779 RVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDF 858 (941)
T ss_pred EEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCC
Confidence 7999999999999999999999999999999999999999999998765 3 4688999999999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEec
Q 008443 454 TVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 454 s~~~~~Q~~GRagR~g~~g~~~~~~~ 479 (565)
++-+-.|.-.||+|.|+...|.++--
T Consensus 859 NP~dD~QAEDRcHRvGQtkpVtV~rL 884 (941)
T KOG0389|consen 859 NPYDDKQAEDRCHRVGQTKPVTVYRL 884 (941)
T ss_pred CCcccchhHHHHHhhCCcceeEEEEE
Confidence 99999999999999999877765543
No 133
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.9e-18 Score=167.21 Aligned_cols=332 Identities=19% Similarity=0.241 Sum_probs=219.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeE
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (565)
+.++.|...+.++...+-+++..-...+..+.+.+..+.+++-++++|.||+|||...---++...+.. ...|
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v 94 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGV 94 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccce
Confidence 347788888999999999988877677777888888888888899999999999976433333433332 2347
Q ss_pred EEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecc
Q 008443 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 198 Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE 277 (565)
...-|++--+.+++.+...-+.-.-+-.++..+.-++.......+ -++|.++|++..... -.+..+++||+||
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L------ky~tDgmLlrEams~-p~l~~y~viiLDe 167 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL------KYCTDGMLLREAMSD-PLLGRYGVIILDE 167 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH------HHhcchHHHHHHhhC-cccccccEEEech
Confidence 777799998888888777665432222233222222211111122 267777776665543 3467899999999
Q ss_pred hhhh-hhCC-CHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHH
Q 008443 278 ADRM-LDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 278 ~H~~-~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (565)
+|.= +..+ ..-.++.++..- ++.++|.||||.... ..+.|+.+.-.+.+.. . . .+...+..-...+..+.
T Consensus 168 ahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg-~-~--PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 168 AHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG-T-H--PVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC-C-C--ceEEEecCCCChhHHHH
Confidence 9942 1111 122334444444 588999999998643 5566777766666554 1 1 12223333334555666
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC---------CCceEEecCCCChhhHHHHHHhhh---cC
Q 008443 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFR---NG 423 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~g 423 (565)
.+..+.+...... .+-+|||....++.+..++.+... .+.++.+| +.+...+++-.. +|
T Consensus 240 airtV~qih~~ee-----~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 240 AIRTVLQIHMCEE-----PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred HHHHHHHHHhccC-----CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 6666666554433 234999999999998888888743 35677787 223333333222 12
Q ss_pred --CeeEEEeccccccCCCccCccEEEEcCC------------------CCCccchhhhhcccccCCCceeEEEEeccc
Q 008443 424 --STNILVATDVASRGLDVMGVAHVVNLDL------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 424 --~~~vLv~T~~~~~Gidip~v~~Vi~~~~------------------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
.-+|+|+|.+++..+.+++|.+||+-+. |.|...-.||.|||||. ++|.|+.+|+..
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 2469999999999999999999997553 45777789999999997 679999999865
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.82 E-value=1.2e-17 Score=176.57 Aligned_cols=273 Identities=19% Similarity=0.191 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|++.|.-+.-.+..| .|..+.||.|||+++.+|+.-..+. |..|.||+++..||.+-++.+..++..+
T Consensus 76 r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~L- 144 (870)
T CHL00122 76 RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFL- 144 (870)
T ss_pred CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHc-
Confidence 5888887766555544 6899999999999999888655543 6779999999999999999999999887
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC---------
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG--------- 285 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~--------- 285 (565)
++.++++.++....+..... .+||+.+|...| ++++.... .....+.+.||||+|.++ |..
T Consensus 145 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 79999988888777655544 489999999877 45554331 134568999999999643 210
Q ss_pred ------CHHHHHHHHHhCCCC-----------------------------------------------------------
Q 008443 286 ------FEPQIREVMQNLPDK----------------------------------------------------------- 300 (565)
Q Consensus 286 ------~~~~~~~i~~~~~~~----------------------------------------------------------- 300 (565)
.......+...+...
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 111111112211110
Q ss_pred ---------------------------------------------------------CeEEEEeccccHHHHHHHHhhcC
Q 008443 301 ---------------------------------------------------------HQTLLFSATMPVEIEALAQGYLT 323 (565)
Q Consensus 301 ---------------------------------------------------------~~~l~~SAT~~~~~~~~~~~~~~ 323 (565)
.++.|||+|...+-..+.+-|-.
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l 382 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL 382 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC
Confidence 03455666655444444333322
Q ss_pred CCeEEEecCcCCCCCceE-EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceE
Q 008443 324 DPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 402 (565)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~ 402 (565)
+-+. +. ...+..... ......+..+|...+++.+.+....+ .|+||-|.+.+..+.+++.|...|++..
T Consensus 383 ~vv~--IP-tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~g-------rPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 383 EVVC--IP-THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTG-------RPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred CEEE--CC-CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcC-------CCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 2111 11 111111111 11234455667777777766544332 2699999999999999999999999999
Q ss_pred EecCCCChhhHH-HHHHhhhcCC-eeEEEeccccccCCCc
Q 008443 403 ALHGGRNQSDRE-SALRDFRNGS-TNILVATDVASRGLDV 440 (565)
Q Consensus 403 ~~~~~~~~~~r~-~~~~~f~~g~-~~vLv~T~~~~~Gidi 440 (565)
++++.....+++ +++.. .|. -.|.|||+|++||.||
T Consensus 453 vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 453 LLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred eeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 999864222222 23322 333 3599999999999998
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=7.4e-17 Score=170.32 Aligned_cols=128 Identities=21% Similarity=0.282 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.-+--.+..| -|..+.||-|||+++.+|+.-..+. |+.|-||+++..||..-++++..++..+
T Consensus 84 ~r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 36788887666666555 5899999999999999998876664 6779999999999999999999998887
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC------CCCCCCceEEEecchhhhh
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML 282 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~ 282 (565)
++.++++.++....+.... ..+||+++|...| ++++..+ ......+.+.||||+|.++
T Consensus 154 -GLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred -CCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 7999998887766655433 4699999999988 4444332 1334678999999999643
No 136
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=171.12 Aligned_cols=337 Identities=13% Similarity=0.060 Sum_probs=225.4
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.++.-.....+|.+++..+.+|+++++.-.|.+||.++|.+..+..++.. .....+++.|+.++++...+-+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCceEE
Confidence 34444567889999999999999999999999999999988877765543 244589999999998866544332
Q ss_pred HHhcCCCce--EEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC----CCCCCceEEEecchhhhhhCC---CH
Q 008443 217 LSRSLDSFK--TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMG---FE 287 (565)
Q Consensus 217 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~----~~~~~~~~iIiDE~H~~~~~~---~~ 287 (565)
.....+..+ ++-.+.+....+.....+.+.+++++.|........-+. .++-...++++||+|.....- ..
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 222222111 222334444444444566789999999988765544332 233346788999999654220 12
Q ss_pred HHHHHHHHhC-----CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEe---------ccchHH
Q 008443 288 PQIREVMQNL-----PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKV---------SENEKV 353 (565)
Q Consensus 288 ~~~~~i~~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 353 (565)
..++++++.. ..+.|++-.+||....++.....+..+.+.+...+.... ....+..+- ....++
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs--~~K~~V~WNP~~~P~~~~~~~~~i 511 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS--SEKLFVLWNPSAPPTSKSEKSSKV 511 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC--ccceEEEeCCCCCCcchhhhhhHH
Confidence 2344443332 246788999999877766555544444443322221111 111122221 112233
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC----CC----ceEEecCCCChhhHHHHHHhhhcCCe
Q 008443 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
......+.+....+. ++|.||.+++-|+.+....++. +. .+..+.|+...++|+.+...+--|++
T Consensus 512 ~E~s~~~~~~i~~~~-------R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L 584 (1034)
T KOG4150|consen 512 VEVSHLFAEMVQHGL-------RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL 584 (1034)
T ss_pred HHHHHHHHHHHHcCC-------cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee
Confidence 333444444443332 5999999999998876655443 21 34567899999999999999999999
Q ss_pred eEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEec--cccHHHHHH
Q 008443 426 NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT--DRDMLLVAQ 488 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~--~~d~~~~~~ 488 (565)
.-+|+|++++.||||..++.|++.++|.|...+.|+.|||||..++..++.+.. +-|..++..
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~H 649 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSH 649 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcC
Confidence 999999999999999999999999999999999999999999988766655543 345555444
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=1.9e-16 Score=173.81 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=78.1
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccC--ccEEEEcCCC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--VAHVVNLDLP 452 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~--v~~Vi~~~~~ 452 (565)
++++|+++|....+.+++.|....+.+ ...|... .+..++++|++++-.||++|+.+.+|||+|. ...||....|
T Consensus 648 g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 648 QPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred CCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCC
Confidence 369999999999999999997665444 3333222 3567899999998899999999999999984 5566777766
Q ss_pred CC------------------------------ccchhhhhcccccCCCceeEEEEeccc
Q 008443 453 KT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 453 ~s------------------------------~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
.. ...+.|.+||.-|...+.-++++++.+
T Consensus 725 F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 725 FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 31 223489999999987655566677665
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=5.9e-19 Score=171.11 Aligned_cols=294 Identities=18% Similarity=0.162 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHhc-C--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~-~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..++|+|+..|..+.. | +..+|+.|+|+|||++- +.+...+ .+++|+|+...--+.||...|+.|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVG-vTAa~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG-VTAACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceee-eeeeeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4689999999999873 3 46899999999999987 4343332 4569999999999999999999997
Q ss_pred hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC--------CCCCCCceEEEecchhhhhhCCCHHHH
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--------~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
.-. +-.++.++.+... ....++.|+|+|+.++..--.+. .+.-..++++|+||+|.+- ...+
T Consensus 370 ti~-d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP----A~MF 439 (776)
T KOG1123|consen 370 TIQ-DDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP----AKMF 439 (776)
T ss_pred ccC-ccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch----HHHH
Confidence 543 3455555554321 34567999999999884222111 1234569999999999875 3344
Q ss_pred HHHHHhCCCCCeEEEEeccccHHHHHHHHhh-cCCCeEEEecCc----CCCCCceEEE----------------------
Q 008443 291 REVMQNLPDKHQTLLFSATMPVEIEALAQGY-LTDPVQVKVGKV----SSPTANVIQI---------------------- 343 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~---------------------- 343 (565)
++++......+ -|++|||+-++...+.... +.-|..+...-. .....++...
T Consensus 440 RRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 440 RRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 55555555555 6999999966544332211 111100000000 0000111111
Q ss_pred -EEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhc
Q 008443 344 -LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN 422 (565)
Q Consensus 344 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 422 (565)
...+....|... .+.|.+.... .+.++|||..+.-...+.+-.|. --.++|.+++.+|..+++.|+-
T Consensus 519 ~lLyvMNP~KFra-CqfLI~~HE~------RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 519 MLLYVMNPNKFRA-CQFLIKFHER------RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred heeeecCcchhHH-HHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhccc
Confidence 112222233322 3333333222 22369999988776666665543 2467899999999999999986
Q ss_pred -CCeeEEEeccccccCCCccCccEEEEcCCC-CCccchhhhhcccccCC
Q 008443 423 -GSTNILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 423 -g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~-~s~~~~~Q~~GRagR~g 469 (565)
..++.++...+....+|+|.++++|+.... .|...-.||+||..|+.
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 468899999999999999999999988765 36677799999999964
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.4e-17 Score=143.09 Aligned_cols=120 Identities=43% Similarity=0.663 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEe
Q 008443 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
.+...+...+.+... ..+++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|.+|...+|++
T Consensus 12 ~k~~~i~~~i~~~~~-------~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 12 EKLEALLELLKEHLK-------KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVA 84 (131)
T ss_pred HHHHHHHHHHHhccc-------CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 566666665554321 2346999999999999999999998999999999999999999999999999999999
Q ss_pred ccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEE
Q 008443 431 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~ 477 (565)
|.++++|+|+|.+++||+++++++...|+|++||++|.|+.|.++++
T Consensus 85 t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 85 TDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999998888764
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=8.9e-16 Score=171.72 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=81.9
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCC--ceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccC--ccEEEEcC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--VAHVVNLD 450 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~--v~~Vi~~~ 450 (565)
+++|||++|....+.+++.|..... ....+.-+++...|..++++|++++-.||++|..+.+|||+|+ +.+||+..
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 3599999999999999999976432 1223333444456899999999998889999999999999997 57888888
Q ss_pred CCCC------------------------------ccchhhhhcccccCCCceeEEEEeccc
Q 008443 451 LPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 451 ~~~s------------------------------~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
.|.. ...+.|.+||.-|...+.-++++++.+
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 6641 222389999999988765567777665
No 141
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.74 E-value=1.3e-17 Score=152.60 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHhc-------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVALS-------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~-------~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
+|+++|.+|+..+.. .+++++.+|||+|||++++ .++..+.. ++||++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~-~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIAL-ALILELAR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHH-HHHHHHHC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhh-hhhhcccc----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999883 5789999999999999984 44444432 59999999999999999997
Q ss_pred HHHhcCCCceEE----------EEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC-----------CCCCCceEEE
Q 008443 216 ALSRSLDSFKTA----------IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-----------TSLSRVSFVI 274 (565)
Q Consensus 216 ~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~-----------~~~~~~~~iI 274 (565)
.+.......... ...................+++++|.+.|........ .....+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665431111000 0001111111222334568899999999977754321 2345689999
Q ss_pred ecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccH
Q 008443 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
+||||++.... .++.++. + +...+|+|||||.+
T Consensus 152 ~DEaH~~~~~~---~~~~i~~-~-~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE-F-KAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH-S-SCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc-C-CCCeEEEEEeCccC
Confidence 99999986321 1666766 3 34569999999964
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=1.3e-16 Score=138.91 Aligned_cols=144 Identities=44% Similarity=0.630 Sum_probs=109.5
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+++++.++||+|||.+++..+...... ...++++|++|+..++.|+.+.+...... ...+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHH
Confidence 368999999999999986555544332 13567999999999999999999888753 4667777777666655
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
........+|+++|++.+.............+++|||||+|.+....................+++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 555567899999999999888877655667799999999999876654433222344445667899999997
No 143
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.73 E-value=2.5e-16 Score=165.87 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=100.5
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCC--eeEEEeccccccCCCccCccEEEEcCC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNLDL 451 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~Gidip~v~~Vi~~~~ 451 (565)
++++|||.......+.|..+|+-+|+..+.++|...-++|+.++++|.... ..+|++|...+.|||+-++++||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 457999999999999999999999999999999999999999999998764 578999999999999999999999999
Q ss_pred CCCccchhhhhcccccCCCceeEEEEeccccH
Q 008443 452 PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 452 ~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
.|++.--.|.-.|+.|.|+...+.+|-.-.+.
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999998888776554433
No 144
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.73 E-value=1.3e-16 Score=160.53 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=95.8
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCe-eEEEeccccccCCCccCccEEEEcCCC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
++++|+|+...+..+.+.++|...++....++|...-.+|..++.+|+..++ -+|++|.+.+.|||+..+++||+||..
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSD 1123 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSD 1123 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCC
Confidence 4579999999999999999999999999999999999999999999998765 468899999999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEE
Q 008443 453 KTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~g~~~~~ 477 (565)
|++..-.|.+.||.|.|+...|.++
T Consensus 1124 WNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1124 WNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCcchhhHHHHHHHhccCccceeee
Confidence 9999999999999999987665444
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=8e-17 Score=158.64 Aligned_cols=271 Identities=21% Similarity=0.235 Sum_probs=177.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
++-+|||.||||+-+ ++++.. .+..+|--|.+-||.+++++++.. ++...+++|.+.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~--------aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN 256 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh--------hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC
Confidence 566999999999765 444443 455899999999999999988876 567777888754332111
Q ss_pred HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHH-HHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR-EVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 241 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~-~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
...+..+-||.+++. . -..+++.||||.+.+.+.+.+..+. .++........+.| -|. .-.+++
T Consensus 257 --~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---eps--vldlV~ 321 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---EPS--VLDLVR 321 (700)
T ss_pred --CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---Cch--HHHHHH
Confidence 123778899988875 2 2358999999999998876555444 44444333322222 221 122222
Q ss_pred hhc---CCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH
Q 008443 320 GYL---TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (565)
Q Consensus 320 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~ 396 (565)
..+ ++.+.+.. ++....-.-.+.++..+.. ..++. ++ .|-+++..-.+...+.+
T Consensus 322 ~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~n--------lk~GD-Cv-V~FSkk~I~~~k~kIE~ 378 (700)
T KOG0953|consen 322 KILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSN--------LKPGD-CV-VAFSKKDIFTVKKKIEK 378 (700)
T ss_pred HHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhcc--------CCCCC-eE-EEeehhhHHHHHHHHHH
Confidence 222 22222221 2222111111122222211 11222 33 34577788889999988
Q ss_pred CCCc-eEEecCCCChhhHHHHHHhhhc--CCeeEEEeccccccCCCccCccEEEEcCCC---------CCccchhhhhcc
Q 008443 397 EGLH-AVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLP---------KTVEDYVHRIGR 464 (565)
Q Consensus 397 ~~~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~---------~s~~~~~Q~~GR 464 (565)
.|.. +++++|+++++.|.+--..|.+ ++.+||||||++++|+|+ +++.||+++.. .+.....|.+||
T Consensus 379 ~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGR 457 (700)
T KOG0953|consen 379 AGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGR 457 (700)
T ss_pred hcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhc
Confidence 8776 9999999999999999999988 899999999999999998 69999998864 356677999999
Q ss_pred cccCCC---ceeEEEEeccccHHHHHH
Q 008443 465 TGRGGS---MGQATSFYTDRDMLLVAQ 488 (565)
Q Consensus 465 agR~g~---~g~~~~~~~~~d~~~~~~ 488 (565)
|||.|. .|.+.++.. +|...+.+
T Consensus 458 AGRf~s~~~~G~vTtl~~-eDL~~L~~ 483 (700)
T KOG0953|consen 458 AGRFGSKYPQGEVTTLHS-EDLKLLKR 483 (700)
T ss_pred ccccccCCcCceEEEeeH-hhHHHHHH
Confidence 999874 366666654 34444443
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=5.5e-15 Score=155.22 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhc----CCeeEEEeccccccCCCc--------c-
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN----GSTNILVATDVASRGLDV--------M- 441 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLv~T~~~~~Gidi--------p- 441 (565)
++++|.+.+....+.+++.|...--..+.+.|..+ .+..++++|+. |+-.||++|+.+.+|||+ |
T Consensus 471 G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G 548 (636)
T TIGR03117 471 GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKD 548 (636)
T ss_pred CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCC
Confidence 35999999999999999999764223344455432 45678888887 478899999999999999 2
Q ss_pred -CccEEEEcCCCCC-------------------------ccchhhhhcccccCCCc--eeEEEEeccc
Q 008443 442 -GVAHVVNLDLPKT-------------------------VEDYVHRIGRTGRGGSM--GQATSFYTDR 481 (565)
Q Consensus 442 -~v~~Vi~~~~~~s-------------------------~~~~~Q~~GRagR~g~~--g~~~~~~~~~ 481 (565)
.+.+||+...|.. ...+.|-+||.-|...+ --++.+++++
T Consensus 549 ~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 549 NLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3889998887732 22348899999998765 4455566555
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=8.4e-18 Score=130.03 Aligned_cols=78 Identities=36% Similarity=0.703 Sum_probs=75.6
Q ss_pred HHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCC
Q 008443 392 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g 469 (565)
++|+..++.+..+||++++.+|..+++.|++|+..|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.71 E-value=1.2e-16 Score=167.18 Aligned_cols=318 Identities=16% Similarity=0.192 Sum_probs=207.4
Q ss_pred CCCHHHHHHHHHHh---cC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL---SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l~---~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
++.+||...+.++. ++ -+.+++..||.|||... +.++.++++... ..|| .|||||+-.|.. |..+|..|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~---~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ---MQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc---cCCC-eEEeccccccCC-chhhccccc
Confidence 78999999999876 23 36899999999999886 778888877542 2345 699999988865 889999887
Q ss_pred hcCCCceEEEEECCCcHHH--HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHH-
Q 008443 219 RSLDSFKTAIVVGGTNIAE--QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ- 295 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~- 295 (565)
. .+..+.+.|...... ......++++|+++|++.+...-. .+.--++.|+||||.|++.+. .-.+...+.
T Consensus 468 P---Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~--lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 468 P---SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKA--LLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred c---ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHH--HHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 4 455555555543322 122334789999999988753111 122335789999999998753 222222232
Q ss_pred hCCCCCeEEEEeccccHH----HHHHHH--------------hhcCCCeE------------------------------
Q 008443 296 NLPDKHQTLLFSATMPVE----IEALAQ--------------GYLTDPVQ------------------------------ 327 (565)
Q Consensus 296 ~~~~~~~~l~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------ 327 (565)
+..... -+++|+||--+ +..+.. .++..|+.
T Consensus 541 ~y~~q~-RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 541 HYRAQR-RLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred cccchh-hhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 222222 45667776110 000000 00000000
Q ss_pred --------------------------------------EEecC--cC---CCCC----------ceEEEE----EEec--
Q 008443 328 --------------------------------------VKVGK--VS---SPTA----------NVIQIL----EKVS-- 348 (565)
Q Consensus 328 --------------------------------------~~~~~--~~---~~~~----------~~~~~~----~~~~-- 348 (565)
..++. .. .... +....+ ..+.
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 00000 00 0000 000000 0000
Q ss_pred --------cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhh
Q 008443 349 --------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 420 (565)
Q Consensus 349 --------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 420 (565)
...|...+-..+-+. ...++++|.||....-...|.++|.-.++....++|.+..++|...++.|
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKL-------katgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKL-------KATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHH-------HhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 111111111111111 12345799999999999999999999999999999999999999999999
Q ss_pred hcCC---eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc
Q 008443 421 RNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 421 ~~g~---~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
..-. ..+|++|...+.|+|+..+++||.||..|++..+.|+-.||.|.|+...|-++....
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 8754 457889999999999999999999999999999999999999999988887776544
No 149
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=9.9e-16 Score=163.24 Aligned_cols=313 Identities=18% Similarity=0.235 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHhcCC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 143 RPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..+++|.++++.+.+.+ ++++.+|+|||||.++.+.++. . ....++++++|..+++..++..+.+.+...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~-----~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----P-----DTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----C-----ccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 34899999999998665 5999999999999999777655 1 245679999999999999999998888777
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHH------HHHHHHH
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP------QIREVMQ 295 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~------~~~~i~~ 295 (565)
.+..+..++|.....- .+....+|+|+||+.+... . ..+.+++.|.||.|.+++. +++ .++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHH
Confidence 7778888888766554 3334578999999999544 2 5667999999999988732 222 2566666
Q ss_pred hCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEecc---chHH----HHHHHHHHHHHHhhh
Q 008443 296 NLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSE---NEKV----DRLLALLVEEAFLAE 368 (565)
Q Consensus 296 ~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~l~~~l~~~~~~~~ 368 (565)
.+.++++++.+|..+.+.-.. .++...-.+.......+.+...+ +..+.. .... ......+.++.
T Consensus 1285 q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~-i~~~~~~~~~~~~~am~~~~~~ai~~~a---- 1356 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIH-IQSVDISHFESRMLAMTKPTYTAIVRHA---- 1356 (1674)
T ss_pred HHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEE-EEEeccchhHHHHHHhhhhHHHHHHHHh----
Confidence 777788899998887543221 12222222223222222222222 122211 1111 12222222222
Q ss_pred ccCCCCCeEEEEEcchhhHHHHHHHHHH----------------------CCCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 369 KSCHPFPLTIVFVERKTRCDEVSEALVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 369 ~~~~~~~~~lvF~~~~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
....+++||++++++|..++..|-. ..+++.+-|.+++..+.+-+-..|..|.+.
T Consensus 1357 ---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~ 1433 (1674)
T KOG0951|consen 1357 ---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQ 1433 (1674)
T ss_pred ---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEE
Confidence 2344699999999999766654421 112233338889988888899999999999
Q ss_pred EEEeccccccCCCccCccEEEEcC-----C------CCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 427 ILVATDVASRGLDVMGVAHVVNLD-----L------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~-----~------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
|+|...- ..|+-.. .+.||.++ - +.+.....|+.|+|.| .|.|++++..++..+++.+
T Consensus 1434 v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1434 VCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 9997766 7777654 34554332 1 3457778999999998 4889999998887776654
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.1e-14 Score=155.63 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=104.0
Q ss_pred EeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCe
Q 008443 346 KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
+.....|...+++.+.+....+ .|+||-+.|++..+.++..|...|++.-++++.....+-+-+-+.=+.|
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~G-------rPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G-- 677 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAG-------RPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG-- 677 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCC-------CCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--
Confidence 3455677778888877765433 2699999999999999999999999988888875544444444443444
Q ss_pred eEEEeccccccCCCcc---C-----ccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 426 NILVATDVASRGLDVM---G-----VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip---~-----v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
.|-|||+|++||.||. . ==+||-...+.|...-.|..||+||.|.+|.+-.|++-+|.-+
T Consensus 678 aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 678 TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 4899999999999995 2 2378888899999999999999999999999999998776543
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.66 E-value=4.5e-15 Score=144.20 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=93.2
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcC-CeeE-EEeccccccCCCccCccEEEEcCCC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNI-LVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-Lv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
.+.|||..-....+.+.-.|.+.|+.|+.+.|+|++..|...++.|.+. .+.| |++-.+.+..+|+..+.+|+++||-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 3699999999999999999999999999999999999999999999875 4554 5566888888899999999999999
Q ss_pred CCccchhhhhcccccCCCc--eeEEEEeccc
Q 008443 453 KTVEDYVHRIGRTGRGGSM--GQATSFYTDR 481 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~--g~~~~~~~~~ 481 (565)
|++..-.|...|..|.|+. -.++.|+-..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999974 5566666544
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.61 E-value=4.8e-13 Score=145.26 Aligned_cols=102 Identities=19% Similarity=0.351 Sum_probs=76.5
Q ss_pred eEEEEEcchhhHHHHHHHHHHC-CCceEEecCCCChhhHHHHHHhhh----cCCeeEEEeccccccCCCccC--ccEEEE
Q 008443 376 LTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFR----NGSTNILVATDVASRGLDVMG--VAHVVN 448 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~~~~~Gidip~--v~~Vi~ 448 (565)
.+|||++|....+.+++.|... +.. +..++. ..+..+++.|+ .|+-.||++|..+.+|||+|+ +++||+
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII 611 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVII 611 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEE
Confidence 3899999999999999998753 333 334443 24677887676 467789999999999999997 788998
Q ss_pred cCCCCC------------------------------ccchhhhhcccccCCCceeEEEEeccc
Q 008443 449 LDLPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 449 ~~~~~s------------------------------~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
...|.. ...+.|.+||.-|...+.-++++++.+
T Consensus 612 ~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 612 TKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 887642 112388899999987665566666655
No 153
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.60 E-value=3.2e-14 Score=143.94 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=88.2
Q ss_pred eEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhc--CCeeE-EEeccccccCCCccCccEEEEcCCC
Q 008443 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNI-LVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v-Lv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
+++|...-......+...+...|.....+||.....+|+.+++.|.. |..+| |++-.+.+.|+|+-+.+++|++|..
T Consensus 748 K~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH 827 (901)
T KOG4439|consen 748 KVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH 827 (901)
T ss_pred eeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc
Confidence 46666665666677788888899999999999999999999999975 44555 4455788999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEEEe
Q 008443 453 KTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
|++..-.|...|..|.|+...|++.-
T Consensus 828 WNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 828 WNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred cCHHHHHHHHHHHHHhcccCceEEEE
Confidence 99999999999999999999888763
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=1.2e-13 Score=151.33 Aligned_cols=103 Identities=25% Similarity=0.287 Sum_probs=78.7
Q ss_pred eEEEEEcchhhHHHHHHHHHHCCCc-eEEecCCCChhhHHHHHHhhhcCCe-eEEEeccccccCCCccC--ccEEEEcCC
Q 008443 376 LTIVFVERKTRCDEVSEALVAEGLH-AVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMG--VAHVVNLDL 451 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidip~--v~~Vi~~~~ 451 (565)
++|||++|...++.+.+.+...... .+..++.. .+..+++.|+.+.- -++|+|..+.+|||+|+ ..+||+...
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 5999999999999999999877653 33444443 44578888887554 89999999999999987 577888887
Q ss_pred CC------------------------------CccchhhhhcccccCCCceeEEEEeccc
Q 008443 452 PK------------------------------TVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 452 ~~------------------------------s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
|. ....+.|.+||+-|...+.-++++++.+
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 64 2233499999999987766666666654
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=2.9e-15 Score=117.05 Aligned_cols=81 Identities=49% Similarity=0.811 Sum_probs=77.5
Q ss_pred HHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccC
Q 008443 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 389 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~ 468 (565)
.+++.|...++.+..+||+++..+|..+++.|++|...|||+|+++++|+|+|++++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008443 469 G 469 (565)
Q Consensus 469 g 469 (565)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=2.2e-12 Score=141.39 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=60.6
Q ss_pred CCCCCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 140 EYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 140 ~~~~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.+++.+....+ ..++++|.+.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 45566999998887665 6788999999999999999999888766432 24689999999999999999998
Q ss_pred HH
Q 008443 216 AL 217 (565)
Q Consensus 216 ~~ 217 (565)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 85
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=1.7e-12 Score=139.77 Aligned_cols=330 Identities=19% Similarity=0.168 Sum_probs=183.8
Q ss_pred CCCCHHHHHHHHHHhc--------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALS--------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~--------~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
..-..+|-+|+..+.. |--++-.|.||+|||++= ..++..+... ..|.|..|-.-.|.|.-|.-+.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~-----~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDD-----KQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCC-----CCCceEEEEccccceeccchHH
Confidence 3456799999998763 112677899999999875 4454443322 2467888888999999999888
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHH-------------------------------------------HHh-------
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRS-------------------------------------------ELR------- 243 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------------------------------~~~------- 243 (565)
+++.++-. +-...+++|+....+..+ .+.
T Consensus 481 ~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 481 LKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 88876432 334444555432211110 000
Q ss_pred -CCCeEEEECchHHHHHHH--cC-CCCCC----CceEEEecchhhhhhCCCHHHHHHHH---HhCCCCCeEEEEeccccH
Q 008443 244 -GGVSIVVATPGRFLDHLQ--QG-NTSLS----RVSFVILDEADRMLDMGFEPQIREVM---QNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 244 -~~~~Ilv~T~~~l~~~~~--~~-~~~~~----~~~~iIiDE~H~~~~~~~~~~~~~i~---~~~~~~~~~l~~SAT~~~ 312 (565)
-...|+|||++.++.... +. ...+. .=+.|||||+|.+-... ...+.+++ ..+ +.++++||||+|.
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~l--G~~VlLmSATLP~ 636 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLL--GSRVLLSSATLPP 636 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHc--CCCEEEEeCCCCH
Confidence 125699999999876652 21 11111 12468999999643221 12233333 333 4569999999987
Q ss_pred HHHHHH-Hhh----------cCC---CeEEEe---cCcCC----------------------------CCCceEEEEEEe
Q 008443 313 EIEALA-QGY----------LTD---PVQVKV---GKVSS----------------------------PTANVIQILEKV 347 (565)
Q Consensus 313 ~~~~~~-~~~----------~~~---~~~~~~---~~~~~----------------------------~~~~~~~~~~~~ 347 (565)
.+...+ ..| .+. +..+.. ..... .+....-.+..+
T Consensus 637 ~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~ 716 (1110)
T TIGR02562 637 ALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSL 716 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeec
Confidence 753322 222 121 111110 00000 000000011111
Q ss_pred ccc-----hHHHHHHHHHH----HHHHhhhccCC-CC---CeEEEEEcchhhHHHHHHHHHHC------CCceEEecCCC
Q 008443 348 SEN-----EKVDRLLALLV----EEAFLAEKSCH-PF---PLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGR 408 (565)
Q Consensus 348 ~~~-----~~~~~l~~~l~----~~~~~~~~~~~-~~---~~~lvF~~~~~~a~~l~~~l~~~------~~~~~~~~~~~ 408 (565)
... .....+.+.+. ........... .+ .-++|-.+++..+-.++..|... .+.+..+|+..
T Consensus 717 ~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~ 796 (1110)
T TIGR02562 717 SSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQD 796 (1110)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccC
Confidence 111 11122222222 11111111111 11 12678888888888888877654 34578899998
Q ss_pred ChhhHHHHHHhh----------------------hc----CCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhh
Q 008443 409 NQSDRESALRDF----------------------RN----GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRI 462 (565)
Q Consensus 409 ~~~~r~~~~~~f----------------------~~----g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~ 462 (565)
+...|..+++.+ ++ +...|+|+|++++.|+|+ +.+.+| .-+.+....+|++
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~a 873 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLA 873 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHh
Confidence 777776655443 12 467899999999999997 345544 3355688899999
Q ss_pred cccccCCCc--eeEEEEeccccHH
Q 008443 463 GRTGRGGSM--GQATSFYTDRDML 484 (565)
Q Consensus 463 GRagR~g~~--g~~~~~~~~~d~~ 484 (565)
||+.|.+.. +...+++...+..
T Consensus 874 GR~~R~~~~~~~~~N~~i~~~N~r 897 (1110)
T TIGR02562 874 GRVNRHRLEKVQQPNIVILQWNYR 897 (1110)
T ss_pred hcccccccCCCCCCcEEEeHhHHH
Confidence 999998753 3333444444433
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.48 E-value=2.7e-12 Score=133.69 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=92.3
Q ss_pred eEEEEEcchhhHHHHHHHHHH----------------------CCCceEEecCCCChhhHHHHHHhhhcCC----eeEEE
Q 008443 376 LTIVFVERKTRCDEVSEALVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGS----TNILV 429 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vLv 429 (565)
+.|||..+....+.+..+|.. .|.....++|.....+|+.+.+.|.+-. -..||
T Consensus 1144 KlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LI 1223 (1567)
T KOG1015|consen 1144 KLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLI 1223 (1567)
T ss_pred eeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEE
Confidence 599999999998888888754 2456788999999999999999998732 34799
Q ss_pred eccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEec
Q 008443 430 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 430 ~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~ 479 (565)
+|.+.+.|||+-.++.||+||..|++.--+|-+=|+.|.|+...|++|-.
T Consensus 1224 STRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1224 STRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred eeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99999999999999999999999999999999999999999999988754
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.45 E-value=5.4e-12 Score=143.79 Aligned_cols=322 Identities=18% Similarity=0.182 Sum_probs=205.6
Q ss_pred CCCCHHHHHHHHHHh-----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~-----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
..++++|.+.+.++. .+.+.+++..+|.|||+.. +..+..+...... ..+.+|+++|. +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~-i~~l~~~~~~~~~---~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQT-IALLLSLLESIKV---YLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHH-HHHHHhhhhcccC---CCCCeEEEecH-HHHHHHHHHHhh
Confidence 467899999998865 2556889999999999886 4444443332211 13568999995 778889999988
Q ss_pred HHhcCCCce-EEEEECCCcH----HHHHHHHhC-C----CeEEEECchHHHHHH-HcCCCCCCCceEEEecchhhhhhCC
Q 008443 217 LSRSLDSFK-TAIVVGGTNI----AEQRSELRG-G----VSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 217 ~~~~~~~~~-~~~~~g~~~~----~~~~~~~~~-~----~~Ilv~T~~~l~~~~-~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+... +. +....|.... .+....+.. . .+++++|++.+.... ....+.-..++++|+||+|.+.+..
T Consensus 412 ~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 412 FAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred hCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 7654 34 5566665541 333333322 2 799999999997632 1122444568999999999976542
Q ss_pred CHHHHHHHHHhCCCCCeEEEEeccc-cHHHHH---HHH-hhc---------------CCCeEEEec--------------
Q 008443 286 FEPQIREVMQNLPDKHQTLLFSATM-PVEIEA---LAQ-GYL---------------TDPVQVKVG-------------- 331 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~-~~~~~~---~~~-~~~---------------~~~~~~~~~-------------- 331 (565)
......+. .+.... .+.+|+|| .+.+.. +.. -++ ..+......
T Consensus 489 -s~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 489 -SSEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred -hHHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 12222332 333333 36677777 111111 111 000 000000000
Q ss_pred ------------CcC-----CCCC--------------------------------------------------------
Q 008443 332 ------------KVS-----SPTA-------------------------------------------------------- 338 (565)
Q Consensus 332 ------------~~~-----~~~~-------------------------------------------------------- 338 (565)
... ..+.
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 000 0000
Q ss_pred ----ceEEEEEEecc-----------------------------c-hHHHHHHHHH-HHHHHhhhccCCCCC--eEEEEE
Q 008443 339 ----NVIQILEKVSE-----------------------------N-EKVDRLLALL-VEEAFLAEKSCHPFP--LTIVFV 381 (565)
Q Consensus 339 ----~~~~~~~~~~~-----------------------------~-~~~~~l~~~l-~~~~~~~~~~~~~~~--~~lvF~ 381 (565)
.+......+.. . .+...+.+.+ .... ..+. ++++|+
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~-------~~~~~~kvlifs 718 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL-------EEGHYHKVLIFS 718 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH-------hhcccccEEEEe
Confidence 00000000000 0 2233333333 1111 1122 699999
Q ss_pred cchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcC--CeeEEEeccccccCCCccCccEEEEcCCCCCccchh
Q 008443 382 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYV 459 (565)
Q Consensus 382 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~ 459 (565)
+.....+.+...+...++....++|.++...|...++.|.++ ..-+++++.+.+.|+|+-..++||++|+.|++....
T Consensus 719 q~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~ 798 (866)
T COG0553 719 QFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVEL 798 (866)
T ss_pred CcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHH
Confidence 999999999999999999999999999999999999999986 456777889999999999999999999999999999
Q ss_pred hhhcccccCCCceeEEEEeccc
Q 008443 460 HRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 460 Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
|...|+.|.|+...|.++-...
T Consensus 799 Qa~dRa~RigQ~~~v~v~r~i~ 820 (866)
T COG0553 799 QAIDRAHRIGQKRPVKVYRLIT 820 (866)
T ss_pred HHHHHHHHhcCcceeEEEEeec
Confidence 9999999999987776665443
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.45 E-value=7.9e-11 Score=118.01 Aligned_cols=293 Identities=19% Similarity=0.260 Sum_probs=201.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCC----------ce---------EEEEECCCcHHHHHHHHh----------
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDS----------FK---------TAIVVGGTNIAEQRSELR---------- 243 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~----------~~---------~~~~~g~~~~~~~~~~~~---------- 243 (565)
..|+||||+|++..|-++.+.+-+++..... +. ...-..+....++.....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3578999999999999998888877654100 00 000001112223322221
Q ss_pred --------------CCCeEEEECchHHHHHHHc------CCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC---CC-
Q 008443 244 --------------GGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PD- 299 (565)
Q Consensus 244 --------------~~~~Ilv~T~~~l~~~~~~------~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~---~~- 299 (565)
...|||||+|=-|...+.. ..-.++.+.++|||.+|.+.-.++ ..+..++..+ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCC
Confidence 3478999999988776663 234577899999999997763322 2233344433 21
Q ss_pred --------------------CCeEEEEeccccHHHHHHHHhhcCCCe-EEEecC-------cCCCCCceEEEEEEecc--
Q 008443 300 --------------------KHQTLLFSATMPVEIEALAQGYLTDPV-QVKVGK-------VSSPTANVIQILEKVSE-- 349 (565)
Q Consensus 300 --------------------~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~-- 349 (565)
-.|.|++|+....++..+....+.+.. .+.+.. .......+.|.+..++.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 138999999999999999888665532 222211 12334456677776542
Q ss_pred -----chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCC
Q 008443 350 -----NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (565)
Q Consensus 350 -----~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 424 (565)
+.+.......+...... ....+.+|||+++--.--.+.++|++.++.++.++...+..+...+-..|..|+
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~----~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR----DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh----ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 23444444444333331 223346999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecc--ccccCCCccCccEEEEcCCCCCccchhhhhcccccCC------CceeEEEEeccccHHHHHHHH
Q 008443 425 TNILVATD--VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG------SMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 425 ~~vLv~T~--~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g------~~g~~~~~~~~~d~~~~~~l~ 490 (565)
..||+.|. -+=+=..|.++..||+|.+|..+.-|-..++..+... ....|.++|+.-|...+++|.
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99999996 3344556888999999999999988877776554433 257899999998888777763
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=4.2e-11 Score=133.61 Aligned_cols=301 Identities=17% Similarity=0.198 Sum_probs=168.1
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+..+|+--||||||++. +-+...+... ...++++|||-++.|-.|+.++|..+..... ... ...+..+.
T Consensus 274 ~~G~IWHtqGSGKTlTm-~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTM-FKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHH-HHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHH
Confidence 45899999999999986 4455555554 2578899999999999999999999875432 111 44455555
Q ss_pred HHHHhCC-CeEEEECchHHHHHHHcCC--CCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHH
Q 008443 239 RSELRGG-VSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 239 ~~~~~~~-~~Ilv~T~~~l~~~~~~~~--~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 315 (565)
.+.+... ..|+|+|.|+|........ ..-.+=-+||+||||+.- ++..-..+-..++ +...++||+||-..-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCcccccc
Confidence 5556543 5899999999977765531 112223367889999753 3333344444454 4669999999943222
Q ss_pred HH-HHhhcCCCeEEEecCcCCCCCceEEEEEEec-------cc-------------------------------------
Q 008443 316 AL-AQGYLTDPVQVKVGKVSSPTANVIQILEKVS-------EN------------------------------------- 350 (565)
Q Consensus 316 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------------------------------- 350 (565)
.. ....++..+.............+..+..... ..
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 1112222221111111000000000000000 00
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCC---------c--------------eEEecCC
Q 008443 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------H--------------AVALHGG 407 (565)
Q Consensus 351 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~---------~--------------~~~~~~~ 407 (565)
.+...+...+...... ......++++.|.++..|..+.+.+..... . ....|..
T Consensus 499 ~r~~~~a~~i~~~f~~---~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 575 (962)
T COG0610 499 VRLIRAAKDIYDHFKK---EEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK 575 (962)
T ss_pred HHHHHHHHHHHHHHHh---hcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH
Confidence 0000011111111111 123345677777777755444444322100 0 0000111
Q ss_pred CChhhHHHHHHh--hhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCC----ceeEEEEec
Q 008443 408 RNQSDRESALRD--FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS----MGQATSFYT 479 (565)
Q Consensus 408 ~~~~~r~~~~~~--f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~----~g~~~~~~~ 479 (565)
....+.....+ .....+++||.++|+-.|.|-|.+++. .+|-|.-....+|.+-|+-|.-. .|.++.|..
T Consensus 576 -~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 576 -LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred -HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 12233444455 345679999999999999999976654 55666777888999999999532 255555554
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.40 E-value=1.2e-11 Score=130.02 Aligned_cols=288 Identities=14% Similarity=0.157 Sum_probs=174.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
.+|.+|+|||||... +..+...+.. .+.++|+|.++++|+.+...+|+.-.-. ++. .+......
T Consensus 52 ~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv--~Y~d~~~~----- 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS--GFV--NYLDSDDY----- 115 (824)
T ss_pred EEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC--cce--eeeccccc-----
Confidence 689999999999864 5555554332 3678999999999999999998765311 111 11111110
Q ss_pred HHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHH-------HHHHHHhCCCCCeEEEEeccccH
Q 008443 241 ELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ-------IREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 241 ~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~-------~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
.+. ..++-+++..++|.+... ..++++|+|||||+-..+..=|.+. +..+...+.....+|++-|++..
T Consensus 116 ~i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 116 IIDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred cccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 111 235778888888864432 3466799999999986654322222 22233444555679999999999
Q ss_pred HHHHHHHhhcCC-CeEEEecCcCCCCCc-eEEEE-EEe--------------------------------ccchHHHHHH
Q 008443 313 EIEALAQGYLTD-PVQVKVGKVSSPTAN-VIQIL-EKV--------------------------------SENEKVDRLL 357 (565)
Q Consensus 313 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~--------------------------------~~~~~~~~l~ 357 (565)
.+-.++...... .+.+.+.....+... ....+ ..+ ..........
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 888888775442 222222211111000 00000 000 0001112233
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccC
Q 008443 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..|......+. .+-||+.+...++.+++.....+..+..+++..+..+. +. =++.+|++=|.++..|
T Consensus 273 ~~L~~~L~~gk-------nIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG 339 (824)
T PF02399_consen 273 SELLARLNAGK-------NICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVG 339 (824)
T ss_pred HHHHHHHhCCC-------cEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEE
Confidence 44444333332 38899999999999999999988899999887665532 22 2568999999999999
Q ss_pred CCccCc--cEEEEc-CCC---CCccchhhhhcccccCCCceeEEEEeccc
Q 008443 438 LDVMGV--AHVVNL-DLP---KTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 438 idip~v--~~Vi~~-~~~---~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
+++-.. +-|..| .+. .+.....|++||.-.. ...+.+++++..
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred eccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 999643 333322 221 2344579999999544 446777777653
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.38 E-value=8.9e-11 Score=124.48 Aligned_cols=316 Identities=21% Similarity=0.261 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.+..+|.-.--.+ ...-+.-+.||-|||+++.+|+.-..+. |+.+.+|+...-|+.--.+++..++..+
T Consensus 80 ~~~dVQliG~i~l--h~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~L- 148 (822)
T COG0653 80 RHFDVQLLGGIVL--HLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFL- 148 (822)
T ss_pred ChhhHHHhhhhhh--cCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHc-
Confidence 3455564444444 3446889999999999998888766554 6669999999999999999999998886
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC------CCCCCCceEEEecchhhhh-h--------CC-
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-D--------MG- 285 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~-~--------~~- 285 (565)
++.+++...+....+...... +||..+|-..| ++++..+ ......+.+.|+||++-++ + .|
T Consensus 149 GlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~ 226 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGP 226 (822)
T ss_pred CCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecc
Confidence 799999999988777666654 89999999888 4444332 1234468899999999543 1 01
Q ss_pred ------CHHHHHHHHHhCCCC--------CeEEE----------------------------------------------
Q 008443 286 ------FEPQIREVMQNLPDK--------HQTLL---------------------------------------------- 305 (565)
Q Consensus 286 ------~~~~~~~i~~~~~~~--------~~~l~---------------------------------------------- 305 (565)
....+..+...+... .+.+.
T Consensus 227 ~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dY 306 (822)
T COG0653 227 AEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDY 306 (822)
T ss_pred cccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCee
Confidence 112222222222111 01111
Q ss_pred ---------------------------------------------------------------EeccccHHHHHHHHhhc
Q 008443 306 ---------------------------------------------------------------FSATMPVEIEALAQGYL 322 (565)
Q Consensus 306 ---------------------------------------------------------------~SAT~~~~~~~~~~~~~ 322 (565)
||+|...+...+..-|.
T Consensus 307 IVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~ 386 (822)
T COG0653 307 IVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYG 386 (822)
T ss_pred EEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccC
Confidence 11111111111111111
Q ss_pred CCCeEEEecCcCCCCCc-eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCce
Q 008443 323 TDPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (565)
Q Consensus 323 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~ 401 (565)
..-+.+. ...+... -..-..+.....|...++..+......+. |+||-..+.+..+.+.+.|.+.|++.
T Consensus 387 l~vv~iP---Tnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gq-------PvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 387 LDVVVIP---TNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQ-------PVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred Cceeecc---CCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCC-------CEEEcCcceecchhHHHHHHhcCCCc
Confidence 1000000 0000000 00112233455677777777777665443 69999999999999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCcc-----------EEEEcCCCCCccchhhhhcccccCCC
Q 008443 402 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA-----------HVVNLDLPKTVEDYVHRIGRTGRGGS 470 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~-----------~Vi~~~~~~s~~~~~Q~~GRagR~g~ 470 (565)
.++.+.-...+-+.+-..-+.| .|-|+|+|+++|-||.--. +||-.....|...-.|.-||+||.|-
T Consensus 457 ~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 8888876644433333333333 4889999999999983222 34555556677777899999999999
Q ss_pred ceeEEEEeccccH
Q 008443 471 MGQATSFYTDRDM 483 (565)
Q Consensus 471 ~g~~~~~~~~~d~ 483 (565)
+|....|++-.|.
T Consensus 535 pG~S~F~lSleD~ 547 (822)
T COG0653 535 PGSSRFYLSLEDD 547 (822)
T ss_pred cchhhhhhhhHHH
Confidence 9999888876654
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.35 E-value=4.1e-12 Score=125.75 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=93.8
Q ss_pred HHHHHHHHHh-------------cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 147 IQAQAMPVAL-------------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 147 ~Q~~al~~l~-------------~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
+|.+++..++ ..+.+|++.++|+|||... +.++..+....... ....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~~--~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQR--GEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTTS--S-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhccccc--cccceeEeecc-chhhhhhhh
Confidence 5777777763 2345899999999999987 55666555542111 12249999998 889999999
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHH-----HHHHcCCCCCCCceEEEecchhhhhhCCCHH
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-----DHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-----~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 288 (565)
+.+++... ...+..+.|...............+++|+|++.+. ..... +..-++++||+||+|.+.+.. .
T Consensus 77 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~--l~~~~~~~vIvDEaH~~k~~~--s 151 (299)
T PF00176_consen 77 IEKWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED--LKQIKWDRVIVDEAHRLKNKD--S 151 (299)
T ss_dssp HHHHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH--HHTSEEEEEEETTGGGGTTTT--S
T ss_pred hccccccc-cccccccccccccccccccccccceeeeccccccccccccccccc--cccccceeEEEeccccccccc--c
Confidence 99998542 35555555554122222223356889999999998 11111 112349999999999985442 2
Q ss_pred HHHHHHHhCCCCCeEEEEecccc
Q 008443 289 QIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 289 ~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.....+..+. ....+++||||-
T Consensus 152 ~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 152 KRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHHHHCCC-ECEEEEE-SS-S
T ss_pred cccccccccc-cceEEeeccccc
Confidence 2333334455 345788999984
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.35 E-value=2.8e-12 Score=106.93 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=81.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+|+--++-..+|+|||.-.+-.++...+.+ +.++|+|.||+.++..+.+.++.. .+.+.. .-.. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t--~~~~-~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT--NARM-R 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS-----SEEEES--TTSS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC-----CcccCc--eeee-c
Confidence 344568899999999987666666666663 788999999999998877766432 222221 1110 0
Q ss_pred HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC--CHHHHHHHHHhCCCCCeEEEEeccccHH
Q 008443 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 237 ~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
...++.-|-++|...+.+++.. .....++++||+||||..-..+ +.-.+... .. .....+|++|||||-.
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGS 139 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT-
T ss_pred ----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCC
Confidence 2235567889999999888776 4557899999999999532111 11111222 22 2235799999999854
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.28 E-value=2.5e-09 Score=116.22 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=58.2
Q ss_pred CeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccC-----CCc--e---eEEEEeccccHHHHHHHHHHH
Q 008443 424 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG-----GSM--G---QATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 424 ~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~-----g~~--g---~~~~~~~~~d~~~~~~l~~~~ 493 (565)
.+++|++.+++.+|.|.|+|-++.-++...|...-.|.+||+.|. |.. + .-.++++.....+...|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999999999989999999999999994 211 1 123344556677888888887
Q ss_pred hhh
Q 008443 494 VDA 496 (565)
Q Consensus 494 ~~~ 496 (565)
.+.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.6e-10 Score=112.57 Aligned_cols=344 Identities=21% Similarity=0.255 Sum_probs=218.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEE-EccCCCch--HHHHHHHHHHHHHhcCC-----------C------------CCCC
Q 008443 140 EYTRPTSIQAQAMPVALSGRDLLG-CAETGSGK--TAAFTIPMIQHCVAQTP-----------V------------GRGD 193 (565)
Q Consensus 140 ~~~~~~~~Q~~al~~l~~~~~~lv-~a~TGsGK--T~~~~l~~~~~~~~~~~-----------~------------~~~~ 193 (565)
.-..+++.|.+.+..+.+-+|++. .+..+.|+ +.+|++-++.++++... . ..-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 345799999999999988888764 33335555 56788888888775320 0 0012
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE---------EEEECCC--------cHHHHHHHH--------------
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKT---------AIVVGGT--------NIAEQRSEL-------------- 242 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~---------~~~~g~~--------~~~~~~~~~-------------- 242 (565)
.|+||||||+++-|-.+.+.+..++.+.+.-+. +-+.|.+ ...+....+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 478999999999999999999888544322010 1111100 001111111
Q ss_pred ----------hCCCeEEEECchHHHHHHHcC------CCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC---CC---
Q 008443 243 ----------RGGVSIVVATPGRFLDHLQQG------NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP---DK--- 300 (565)
Q Consensus 243 ----------~~~~~Ilv~T~~~l~~~~~~~------~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~---~~--- 300 (565)
....||+||+|--|...+... .-.+..+.++|||-+|-++...+. .+..|+.++. .+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccC
Confidence 245899999998886666521 123566889999999988744332 2334444432 11
Q ss_pred ------------------CeEEEEeccccHHHHHHHHhhcCCCeE-EEec------CcCCCCCceEEEEEEe-------c
Q 008443 301 ------------------HQTLLFSATMPVEIEALAQGYLTDPVQ-VKVG------KVSSPTANVIQILEKV-------S 348 (565)
Q Consensus 301 ------------------~~~l~~SAT~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~-------~ 348 (565)
.|++++|+--......+...++.+... +... ........+.+.+..+ .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 267777777666666666666544221 1111 1111111222222221 1
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEE
Q 008443 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
.+.+.......+.-........ -+||+.++--.--.+..++++..+..+.++.-.+...-.++-+.|-.|...||
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s-----~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vl 606 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTES-----GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVL 606 (698)
T ss_pred chHHHHHHHHhhchhhcccccC-----ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEE
Confidence 2344445444443333222211 27999999999999999999999999889888888888888899999999999
Q ss_pred Eecc--ccccCCCccCccEEEEcCCCCCccch---hhhhcccccCC----CceeEEEEeccccHHHHHHH
Q 008443 429 VATD--VASRGLDVMGVAHVVNLDLPKTVEDY---VHRIGRTGRGG----SMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 429 v~T~--~~~~Gidip~v~~Vi~~~~~~s~~~~---~Q~~GRagR~g----~~g~~~~~~~~~d~~~~~~l 489 (565)
+-|. -+-+-.+|.+|..||+|.+|..+.-| +.+.+|+.-.| ..-.|.++|+.-|..-+..+
T Consensus 607 LyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 607 LYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred EEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 9996 34566789999999999999988777 55555543222 23578888888777655554
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.8e-09 Score=104.98 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=57.3
Q ss_pred CCCHHHHHHHH----HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 143 ~~~~~Q~~al~----~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
+|+|.|.+.+. .+..|.++++.+|||+|||++|+++++.++...... ..+.+++|+++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999554 445788899999999999999999998876653210 01347999999999999988877765
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.8e-09 Score=104.98 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=57.3
Q ss_pred CCCHHHHHHHH----HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 143 ~~~~~Q~~al~----~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
+|+|.|.+.+. .+..|.++++.+|||+|||++|+++++.++...... ..+.+++|+++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999554 445788899999999999999999998876653210 01347999999999999988877765
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.05 E-value=4.2e-08 Score=101.06 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=97.5
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCC------------------ceEEecCCCChhhHHHHHHhhhcCC---eeEEEeccc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGL------------------HAVALHGGRNQSDRESALRDFRNGS---TNILVATDV 433 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g~---~~vLv~T~~ 433 (565)
.++|||..+....+.+.+.|.+..+ ....++|..+..+|+.++++|.+.- .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 4689999999998988888877533 2346788899999999999998732 368899999
Q ss_pred cccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 434 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 434 ~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
...|||+-..+.+|.+|.-|++.--.|.+-|..|.|+.+.|+++-.-.|...-+.|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 99999999999999999999999999999999999999999988776666555554
No 171
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.04 E-value=2.8e-08 Score=104.02 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccC--CCcee-----------EEEEeccccHHHHHHH
Q 008443 423 GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG--GSMGQ-----------ATSFYTDRDMLLVAQI 489 (565)
Q Consensus 423 g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~--g~~g~-----------~~~~~~~~d~~~~~~l 489 (565)
...++|++..++-+|.|=|+|=++.-+....|...=+|.+||+.|. .+.|. -.+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999993 12222 3356667788888888
Q ss_pred HHHHhhhc
Q 008443 490 KKAIVDAE 497 (565)
Q Consensus 490 ~~~~~~~~ 497 (565)
.+.+.+..
T Consensus 562 qkEI~~~s 569 (985)
T COG3587 562 QKEINDES 569 (985)
T ss_pred HHHHHHhh
Confidence 88876544
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.04 E-value=9.3e-09 Score=97.17 Aligned_cols=128 Identities=26% Similarity=0.371 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-+.-.+..|+ |+...||-|||++.++++....+. |..|-||+.+..|+..-++++..++..+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 478999999998887776 999999999999988887766664 7789999999999999999999999887
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML 282 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~ 282 (565)
++.++...++....+...... ++|+++|...+ ++++.... .....++++||||+|.++
T Consensus 146 -Glsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -T--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred -hhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 799999999888766555544 78999999988 44454321 124678999999999765
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.86 E-value=7.9e-08 Score=104.72 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecccc
Q 008443 245 GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 245 ~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
...|+++||+.|...+..+.+++.++..|||||||++.+..-..-+.+++....+..-+.+|||.|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3679999999999999999999999999999999999766555555666665555556999999994
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.77 E-value=7.1e-08 Score=101.11 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=176.3
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE
Q 008443 147 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 147 ~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
+-.+.+..+...+-+++-+.||+|||..++-.+++.++...... -.-+.+--|++--+.-+++++.+--.. .+
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~---~~na~v~qprrisaisiaerva~er~e----~~ 454 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA---SFNAVVSQPRRISAISLAERVANERGE----EV 454 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc---cccceeccccccchHHHHHHHHHhhHH----hh
Confidence 34455566666667899999999999998888888877753211 122555568877777666665443211 11
Q ss_pred EEEECCCcHHHHHHHH-hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhh-hCCCHHHHHHHHHhCCCCCeEE
Q 008443 227 AIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTL 304 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~~~~~~l 304 (565)
+-..|-....+ ... ...--|+++|.+-+++.+.... ..+.++|+||.|..- +..|...+.+=+.-.-+...++
T Consensus 455 g~tvgy~vRf~--Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 455 GETCGYNVRFD--SATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred ccccccccccc--ccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhh
Confidence 11111110000 011 1224589999999998887543 357789999999542 1122222211111112233455
Q ss_pred EEeccccHHH--------------------HHHHHhhcCCCe-EE-------EecC---cCCCC-------CceEEE---
Q 008443 305 LFSATMPVEI--------------------EALAQGYLTDPV-QV-------KVGK---VSSPT-------ANVIQI--- 343 (565)
Q Consensus 305 ~~SAT~~~~~--------------------~~~~~~~~~~~~-~~-------~~~~---~~~~~-------~~~~~~--- 343 (565)
+||||+..+. ..+....+..+. .+ .... ..... .+....
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 5555553221 111111111000 00 0000 00000 000000
Q ss_pred -------EEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-------CCceEEecCCCC
Q 008443 344 -------LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRN 409 (565)
Q Consensus 344 -------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------~~~~~~~~~~~~ 409 (565)
............+++.+.... ....-.+-+++|.+--...-.|...+... .+.+...|+-..
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i----~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDI----ASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhh----cccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 000000111122223322222 22223345889988888777777766554 356778899888
Q ss_pred hhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC------------------CCccchhhhhcccccCCCc
Q 008443 410 QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------------------KTVEDYVHRIGRTGRGGSM 471 (565)
Q Consensus 410 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------------------~s~~~~~Q~~GRagR~g~~ 471 (565)
..+..++.+.-..|..+++++|.+...-+.+-++..|++.+.. .+.....|+.||+||. ++
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~ 764 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RP 764 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cc
Confidence 8888888888888999999999999999888887777654432 2555669999999997 56
Q ss_pred eeEEEEeccc
Q 008443 472 GQATSFYTDR 481 (565)
Q Consensus 472 g~~~~~~~~~ 481 (565)
|.|..++..-
T Consensus 765 G~~f~lcs~a 774 (1282)
T KOG0921|consen 765 GFCFHLCSRA 774 (1282)
T ss_pred cccccccHHH
Confidence 8887777543
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=6.7e-09 Score=110.67 Aligned_cols=267 Identities=17% Similarity=0.201 Sum_probs=154.3
Q ss_pred CCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 143 RPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
...|.|...+..+.+- .++++.+|||+|||++|.+.++..+... .+.++++++|-.+|+..-.+.+......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~r~~~- 999 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSKRDEL- 999 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhhhccc-
Confidence 5566777777666543 4689999999999999987776654443 3678999999999999998888887755
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHH--cCCCCCCCceEEEecchhhhhhCCCHHHHHHH------
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ--QGNTSLSRVSFVILDEADRMLDMGFEPQIREV------ 293 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~--~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i------ 293 (565)
+++++.-++|+...+-. -..+.+++|+||+++..... .....+.++.++|+||.|.+.+ ++++.++.+
T Consensus 1000 ~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNY 1075 (1230)
T ss_pred CCceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeecccc
Confidence 37888888888765521 12458999999999987766 3355678899999999997754 333333222
Q ss_pred -HHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCC
Q 008443 294 -MQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 372 (565)
Q Consensus 294 -~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 372 (565)
-....+..+++++|.-+.+ ...+++.+-..+. ........+.+ ....+...+. ...-.....+.+-.....+...
T Consensus 1076 ~s~~t~~~vr~~glsta~~n-a~dla~wl~~~~~-~nf~~svrpvp-~~~~i~gfp~-~~~cprm~smnkpa~qaik~~s 1151 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLSTALAN-ANDLADWLNIKDM-YNFRPSVRPVP-LEVHIDGFPG-QHYCPRMMSMNKPAFQAIKTHS 1151 (1230)
T ss_pred CccccCcchhhhhHhhhhhc-cHHHHHHhCCCCc-CCCCcccccCC-ceEeecCCCc-hhcchhhhhcccHHHHHHhcCC
Confidence 1223345566776654432 2333333222111 11111111111 1111111111 0111111222333344445556
Q ss_pred CCCeEEEEEcchhhHHHHHHHHHH----CCCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 373 PFPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 373 ~~~~~lvF~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
|..|++||+.++.....-+..|-. ..-+...++ ++..+-+.++...++..++
T Consensus 1152 p~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1152 PIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccchh
Confidence 778999999988765444333322 111222233 2355556666665554433
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.62 E-value=1.9e-07 Score=85.52 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHhcCC-C-EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 143 RPTSIQAQAMPVALSGR-D-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~-~-~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
+|++-|.+|+..++... . .++.|+.|+|||.+. -.+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-------AGKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-------TT--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhhC-----
Confidence 47899999999997544 3 678899999999863 444444444 36789999999888776555411
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC----CCCCCceEEEecchhhhhhCCCHHHHHHHHHh
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~----~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~ 296 (565)
+. ..|...++....... ..+...++|||||+-.+. ...+..++..
T Consensus 68 ---~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~ 116 (196)
T PF13604_consen 68 ---IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRL 116 (196)
T ss_dssp ---S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHH
T ss_pred ---cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHH
Confidence 01 122222211111100 114567799999999875 5567788887
Q ss_pred CCC-CCeEEEEeccc
Q 008443 297 LPD-KHQTLLFSATM 310 (565)
Q Consensus 297 ~~~-~~~~l~~SAT~ 310 (565)
.+. +.++|++.-+-
T Consensus 117 ~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 117 AKKSGAKLILVGDPN 131 (196)
T ss_dssp S-T-T-EEEEEE-TT
T ss_pred HHhcCCEEEEECCcc
Confidence 766 67777776654
No 177
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=7.7e-07 Score=89.91 Aligned_cols=142 Identities=23% Similarity=0.242 Sum_probs=76.0
Q ss_pred EEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH----HH
Q 008443 163 GCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA----EQ 238 (565)
Q Consensus 163 v~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~ 238 (565)
..++||+|||++.+- ++-++..+ .-...||.|....++.....-|..-...---+.-.+..++.... ..
T Consensus 2 f~matgsgkt~~ma~-lil~~y~k------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAG-LILECYKK------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHH-HHHHHHHh------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 468999999999744 44444543 23448888888777776554433211100000111112222111 00
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCC---C---CCCCceEEEe-cchhhhhhCC---------CHHHHHH-HHHhC--CC
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGN---T---SLSRVSFVIL-DEADRMLDMG---------FEPQIRE-VMQNL--PD 299 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~---~---~~~~~~~iIi-DE~H~~~~~~---------~~~~~~~-i~~~~--~~ 299 (565)
......+..|+++|.|.|...+.+.. . .+.+..+|.+ ||+||+-... ....+.. ++..+ .+
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 11234568899999999987765432 2 3445555544 9999985321 1112222 22222 22
Q ss_pred CCeEEEEecccc
Q 008443 300 KHQTLLFSATMP 311 (565)
Q Consensus 300 ~~~~l~~SAT~~ 311 (565)
+.-++.+|||.+
T Consensus 155 d~~~lef~at~~ 166 (812)
T COG3421 155 DNLLLEFSATIP 166 (812)
T ss_pred CceeehhhhcCC
Confidence 333777899987
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.53 E-value=4.2e-07 Score=86.31 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHhcCCC-EEEEccCCCchHHHHHHHHHHHHHhcC-CCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~-~lv~a~TGsGKT~~~~l~~~~~~~~~~-~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
+|++.|.+|+..++.... .+|.||.|||||.+. ..++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368999999999998888 999999999999764 44455442100 00012477899999999999999998887
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.53 E-value=5.3e-07 Score=81.83 Aligned_cols=142 Identities=15% Similarity=0.260 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH-------HHHH
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-------EKEV 214 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~-------~~~~ 214 (565)
...+..|..++..+....-+++.||.|||||++++..+++.+... .-.+++++-|..+..+.+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 356889999999999777799999999999999877777766542 345688888876542211 1111
Q ss_pred HHHHh----cCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHH
Q 008443 215 KALSR----SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 215 ~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
..++. .+..+. +....+ .+.....|-+.+..-+. + ..++ -.+||||||+.+. ...+
T Consensus 77 ~p~~~p~~d~l~~~~-----~~~~~~----~~~~~~~Ie~~~~~~iR-----G-rt~~-~~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-----GKEKLE----ELIQNGKIEIEPLAFIR-----G-RTFD-NAFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp -TTTHHHHHHHTTTS------TTCHH----HHHHTTSEEEEEGGGGT-----T---B--SEEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHh-----ChHhHH----HHhhcCeEEEEehhhhc-----C-cccc-ceEEEEecccCCC----HHHH
Confidence 11110 000000 111111 12223456666544332 1 1222 3799999999876 6778
Q ss_pred HHHHHhCCCCCeEEEEecc
Q 008443 291 REVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 291 ~~i~~~~~~~~~~l~~SAT 309 (565)
+.++.++..+++++++.-.
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 9999999988988877654
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.50 E-value=2.2e-06 Score=81.37 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh--------c--CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 008443 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--------S--GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~--------~--~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~ 195 (565)
+.|++.++.. ..+...|.+++-... . ..-+++-..||.||--..+--+++..+. ..+
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------Gr~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------GRK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------CCC
Confidence 3566655543 257888988886543 1 2348899999999998765556666554 245
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC---CCC------
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTS------ 266 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~---~~~------ 266 (565)
+.|+|.....|.....+.++.+... .+.+..+..-... + ...-...|||+|+..|....... ...
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~-~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYG-D---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC--cccceechhhccC-c---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 6999999999999999999987654 2222222211000 0 11224579999999986654321 111
Q ss_pred ---CCCceEEEecchhhhhhCCC--------HHHHHHHHHhCCCCCeEEEEeccccHHH
Q 008443 267 ---LSRVSFVILDEADRMLDMGF--------EPQIREVMQNLPDKHQTLLFSATMPVEI 314 (565)
Q Consensus 267 ---~~~~~~iIiDE~H~~~~~~~--------~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 314 (565)
-+.=++||+||||.+.+..- +.....+.+.++ +.+++.+|||...+.
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCC
Confidence 11235899999998865432 123444556665 566999999976443
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.42 E-value=7e-07 Score=95.34 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=92.1
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCC-ee-EEEeccccccCCCccCccEEEEcCCC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-TN-ILVATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
++++||+.-...+..+.-.|...++....+.|.|+...|...+..|..+. .. .+++..+.+.|+++-.+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999988999999999999999999999998543 33 35677899999999999999999999
Q ss_pred CCccchhhhhcccccCCCceeEEE
Q 008443 453 KTVEDYVHRIGRTGRGGSMGQATS 476 (565)
Q Consensus 453 ~s~~~~~Q~~GRagR~g~~g~~~~ 476 (565)
|++..--|.+-|+.|.|+...|.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999877765
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.33 E-value=1.9e-06 Score=87.71 Aligned_cols=65 Identities=28% Similarity=0.389 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHhcCCC-EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~-~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
..+.+-|+.|+....+.++ .++.||+|||||.+. ..++..+..+ ++++|+.+|+..-+..+.+++
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHh
Confidence 3578899999999988765 789999999999985 6677777764 789999999999998888853
No 183
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.32 E-value=1.7e-06 Score=77.06 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=73.7
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCC--ceEEecCCCChhhHHHHHHhhhcCCeeEEEecc--ccccCCCccC--ccEEEE
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATD--VASRGLDVMG--VAHVVN 448 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gidip~--v~~Vi~ 448 (565)
+.+|||++|....+.+.+.+..... ....+.. ...++..+++.|++++-.||+++. .+.+|||+|+ ++.||.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 4699999999999999999886532 1122222 355788999999999999999998 9999999996 778999
Q ss_pred cCCCCCcc------------------------------chhhhhcccccCCCceeEEEEeccc
Q 008443 449 LDLPKTVE------------------------------DYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 449 ~~~~~s~~------------------------------~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
...|.... ...|.+||+-|...+--++++++.+
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 88874211 1178999999998876667777654
No 184
>PRK10536 hypothetical protein; Provisional
Probab=98.30 E-value=2.1e-05 Score=73.54 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=84.3
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH-------HH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ-------QI 210 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~-------Q~ 210 (565)
..++...+..|...+..+.+...+++.|++|||||+++....++.++.. .-.++++.-|..+... ..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3455667889999999998877789999999999998855555444332 1334555556644221 11
Q ss_pred HHHHHHHHhcCC-CceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHH
Q 008443 211 EKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (565)
Q Consensus 211 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~ 288 (565)
.+.+..++...- .+. .+.+...... .+. ....|-|....-+ .- ..++ -++|||||++.+. ..
T Consensus 128 ~eK~~p~~~pi~D~L~--~~~~~~~~~~---~~~~~~~~Iei~~l~ym----RG--rtl~-~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 128 AEKFAPYFRPVYDVLV--RRLGASFMQY---CLRPEIGKVEIAPFAYM----RG--RTFE-NAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHHHH--HHhChHHHHH---HHHhccCcEEEecHHHh----cC--Cccc-CCEEEEechhcCC----HH
Confidence 222222221110 000 0111111111 111 1234555543222 21 2232 3799999999875 57
Q ss_pred HHHHHHHhCCCCCeEEEEec
Q 008443 289 QIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 289 ~~~~i~~~~~~~~~~l~~SA 308 (565)
.+..++..+..+.++|+..-
T Consensus 192 ~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHhhcCCCCEEEEeCC
Confidence 78889999998887776543
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.24 E-value=5.2e-06 Score=83.71 Aligned_cols=107 Identities=18% Similarity=0.308 Sum_probs=68.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
++|.|..|||||+++ +.++..+... ..+.+++++++...|...+.+.+......
T Consensus 4 ~~I~G~aGTGKTvla-~~l~~~l~~~-----~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLA-LNLAKELQNS-----EEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------- 57 (352)
T ss_pred EEEEecCCcCHHHHH-HHHHHHhhcc-----ccCCceEEEEecchHHHHHHHHHhhhccc--------------------
Confidence 689999999999987 6666655111 14677999999999988777776654300
Q ss_pred HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-------CHHHHHHHHHh
Q 008443 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-------FEPQIREVMQN 296 (565)
Q Consensus 241 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-------~~~~~~~i~~~ 296 (565)
......+..+..+.............+++|||||||++...+ ....+..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001122334444433322223456689999999999998631 23556666665
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.18 E-value=1.9e-05 Score=85.20 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
..+++.|.+|+..++.. ..++|.||+|||||.+. ..++..+... |.++|+++|+..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46899999999998876 45889999999999875 5555555543 66899999999999988888766
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.18 E-value=4.9e-05 Score=78.09 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=62.6
Q ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 135 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 135 ~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
.+...+..+|+.-|..|+..+++..-.||.||.|||||.+.+ .++-++.++ .+..+|+++|..--+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 455668889999999999999988889999999999999874 444555554 3566999999999999998887
Q ss_pred HHH
Q 008443 215 KAL 217 (565)
Q Consensus 215 ~~~ 217 (565)
.+-
T Consensus 475 h~t 477 (935)
T KOG1802|consen 475 HKT 477 (935)
T ss_pred Hhc
Confidence 764
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.15 E-value=2.4e-05 Score=83.56 Aligned_cols=142 Identities=19% Similarity=0.256 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCc
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
.++|+.|+...+..+-.+|.|++|||||.+. ..++..+.+.. .....++++++||..-+..+.+.+.......+ .
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c
Confidence 5899999999988888999999999999874 44455444321 11235788999998888887777665443221 0
Q ss_pred eEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHH------cCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC
Q 008443 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~------~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
.. ........-..|..+|+.... ......-.+++|||||+-.+. ...+..++..++
T Consensus 229 -----~~---------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 -----TD---------EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred -----ch---------hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 00 000001111233333321111 111123347899999999764 666788899999
Q ss_pred CCCeEEEEecc
Q 008443 299 DKHQTLLFSAT 309 (565)
Q Consensus 299 ~~~~~l~~SAT 309 (565)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99999887655
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.14 E-value=3.1e-05 Score=82.48 Aligned_cols=143 Identities=20% Similarity=0.270 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCc
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~ 224 (565)
.++|+.|+...+.++-.+|.|+.|||||.+. ..++..+.+..+. ..+.++++.+||---+..+.+.+........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~-- 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLA-- 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccc--
Confidence 3799999999999888999999999999875 4455544443211 0135799999998877776666655432211
Q ss_pred eEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHH------cCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC
Q 008443 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (565)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~------~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~ 298 (565)
.. . .......+-..|..+|+.... ........+++|||||+=++. ...+..++..++
T Consensus 222 -~~--------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~ 284 (586)
T TIGR01447 222 -AA--------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALP 284 (586)
T ss_pred -cc--------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcC
Confidence 00 0 000011122344444432211 011223358999999999764 566788889999
Q ss_pred CCCeEEEEecc
Q 008443 299 DKHQTLLFSAT 309 (565)
Q Consensus 299 ~~~~~l~~SAT 309 (565)
+..++|++.-.
T Consensus 285 ~~~rlIlvGD~ 295 (586)
T TIGR01447 285 PNTKLILLGDK 295 (586)
T ss_pred CCCEEEEECCh
Confidence 89998887654
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.09 E-value=4.1e-05 Score=84.01 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
-..+++.|++|+..+..++-++|.|+.|||||.+. -.++..+.... ....+++++||-.-+..+.+. .+
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~----~g- 389 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEV----TG- 389 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHh----cC-
Confidence 35799999999999988888999999999999874 33444333220 115688899997776644322 11
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
... ..... .+.. .++..... ..-.....++|||||++.+. ...+..++..++..
T Consensus 390 ---~~a------~Tih~---lL~~-------~~~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 390 ---LTA------STIHR---LLGY-------GPDTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDH 443 (720)
T ss_pred ---Ccc------ccHHH---Hhhc-------cCCccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhCCCC
Confidence 000 00000 0100 00000000 00112357899999999875 45567888888888
Q ss_pred CeEEEEecc
Q 008443 301 HQTLLFSAT 309 (565)
Q Consensus 301 ~~~l~~SAT 309 (565)
.++|++.-+
T Consensus 444 ~rlilvGD~ 452 (720)
T TIGR01448 444 ARLLLVGDT 452 (720)
T ss_pred CEEEEECcc
Confidence 888887654
No 191
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.09 E-value=6.2e-05 Score=69.02 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=84.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS---GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 123 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~---~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
|+...-+..++-.+. +-.-+++.|.+....+.+ |.+.+...-+|.|||.+. +|++..+++. ...-+.+
T Consensus 5 w~p~~~P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd------g~~Lvrv 75 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD------GSRLVRV 75 (229)
T ss_pred CCchhChHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC------CCcEEEE
Confidence 444444455543332 223579999999988874 568999999999999996 9999988875 2345677
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCC--ceEEEEECCCcHH-----HH---HHHHhCCCeEEEECchHHHHHH
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDS--FKTAIVVGGTNIA-----EQ---RSELRGGVSIVVATPGRFLDHL 260 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~--~~~~~~~g~~~~~-----~~---~~~~~~~~~Ilv~T~~~l~~~~ 260 (565)
+|| .+|..|....++..++..-+ +.+.-+.-..... .. .........|+++||+.++.+.
T Consensus 76 iVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 76 IVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 777 68999999999888765422 2222222222211 11 1112245679999999886543
No 192
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.89 E-value=0.00011 Score=82.22 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHhcCCC-EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~-~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..|++-|.+|+..++.+++ ++|.|..|||||.+ +..+..+.+. .|.+++.++||---+..+.+ -.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e----~t-- 410 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENLEG----GS-- 410 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHHhh----cc--
Confidence 4699999999999988665 78999999999986 3344444433 37789999998765543321 10
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC-CC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~ 299 (565)
++. -.|..+|......+...+...++|||||+-.+. ...+..++... +.
T Consensus 411 --Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~ 460 (988)
T PRK13889 411 --GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADA 460 (988)
T ss_pred --Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhC
Confidence 110 012222221111222345567899999999775 34455666543 45
Q ss_pred CCeEEEEecc
Q 008443 300 KHQTLLFSAT 309 (565)
Q Consensus 300 ~~~~l~~SAT 309 (565)
..++|++.-+
T Consensus 461 garvVLVGD~ 470 (988)
T PRK13889 461 GAKVVLVGDP 470 (988)
T ss_pred CCEEEEECCH
Confidence 6778887655
No 193
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.88 E-value=6.8e-05 Score=72.23 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=88.1
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCC--EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~--~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
-.|+...+..|.-|++.++...- +.+.|+.|||||+.++.+.+...+.+.. -.++++-=|+..+.+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dI----- 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDI----- 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCccccc-----
Confidence 35777888899999999986653 7789999999999998888888887643 34477766776654322
Q ss_pred HHHhcCCCceEEEEECCC--cHHHHHHHHhCCCeEEEE----CchHHHHHHHcCCCCCCC----------ceEEEecchh
Q 008443 216 ALSRSLDSFKTAIVVGGT--NIAEQRSELRGGVSIVVA----TPGRFLDHLQQGNTSLSR----------VSFVILDEAD 279 (565)
Q Consensus 216 ~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~Ilv~----T~~~l~~~~~~~~~~~~~----------~~~iIiDE~H 279 (565)
+.+-|.. ....|...+..+-.+++. +-+.+-..+.+..+.+.. =.+||||||+
T Consensus 293 -----------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ 361 (436)
T COG1875 293 -----------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ 361 (436)
T ss_pred -----------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhh
Confidence 1111111 011111111111111111 122332332222221111 2479999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
.+. ...++.|+.+..++.+++++.-
T Consensus 362 NLT----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 362 NLT----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ccC----HHHHHHHHHhccCCCEEEEcCC
Confidence 886 7778999999998888887653
No 194
>PF13245 AAA_19: Part of AAA domain
Probab=97.87 E-value=5.6e-05 Score=57.15 Aligned_cols=60 Identities=32% Similarity=0.460 Sum_probs=41.0
Q ss_pred HHHHHhcCCC-EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 151 AMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 151 al~~l~~~~~-~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
|+...+.+.. ++|.|+.|||||.+. +..+..+..... . .+.++|+++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~~--~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL-AARIAELLAARA--D-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH-HHHHHHHHHHhc--C-CCCeEEEECCCHHHHHHHHHHH
Confidence 4442233444 566999999999776 445555553210 1 2677999999999999888877
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.85 E-value=8.3e-05 Score=79.80 Aligned_cols=135 Identities=26% Similarity=0.223 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 127 ~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~-~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
.+.|.+.+. -...|+.-|++|+..++..++ .||.|=+|||||.+. ..++..+.. .|++||+.+=|-.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~-------~gkkVLLtsyThs 724 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVA-------LGKKVLLTSYTHS 724 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHH-------cCCeEEEEehhhH
Confidence 355555443 234789999999999998877 789999999999875 334444444 3888999999888
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEEC---------------CCcHH--HHHHHHhCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 206 LAQQIEKEVKALSRSLDSFKTAIVVG---------------GTNIA--EQRSELRGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g---------------~~~~~--~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
-+..+.-.++... +...-+.. +.+.+ +.....-+...||.+|--.+.+.+ +..+
T Consensus 725 AVDNILiKL~~~~-----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R 795 (1100)
T KOG1805|consen 725 AVDNILIKLKGFG-----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNR 795 (1100)
T ss_pred HHHHHHHHHhccC-----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhcc
Confidence 8877766665542 22111111 11111 111122355778888854444333 3445
Q ss_pred CceEEEecchhhhh
Q 008443 269 RVSFVILDEADRML 282 (565)
Q Consensus 269 ~~~~iIiDE~H~~~ 282 (565)
.|||+|||||-.+.
T Consensus 796 ~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 796 QFDYCIIDEASQIL 809 (1100)
T ss_pred ccCEEEEccccccc
Confidence 69999999999764
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.85 E-value=0.00014 Score=80.19 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
..+++.|++|+..+..+ +-++|.|+.|+|||.+. ..+..++.. .|.++++++||---+..+.+ -.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll--~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~----~~-- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML--KAAREAWEA------AGYRVIGAALSGKAAEGLQA----ES-- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH--HHHHHHHHh------CCCeEEEEeCcHHHHHHHHh----cc--
Confidence 46899999999999875 45799999999999763 334434433 37789999999665554322 11
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHh-CCC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~-~~~ 299 (565)
++.. .|..++..........+...++|||||+-.+. ...+..++.. ...
T Consensus 417 --g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~ 466 (744)
T TIGR02768 417 --GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEA 466 (744)
T ss_pred --CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 1110 12222211112222345678999999999775 3334455553 234
Q ss_pred CCeEEEEec
Q 008443 300 KHQTLLFSA 308 (565)
Q Consensus 300 ~~~~l~~SA 308 (565)
..++|++.-
T Consensus 467 ~~kliLVGD 475 (744)
T TIGR02768 467 GAKVVLVGD 475 (744)
T ss_pred CCEEEEECC
Confidence 677777663
No 197
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.70 E-value=0.00052 Score=77.38 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
+++..+......+ ..|++-|.+|+..+..+ +-.+|.|..|+|||.+ +..+..+.+. .|.+++.++|+-.-
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~------~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA------AGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEEcCcHHH
Confidence 3344444333322 47999999999988644 4488999999999987 3344444443 37789999998665
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCC
Q 008443 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 286 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~ 286 (565)
+..+. +-. ++.. .|..+|......+...+..-++|||||+..+.
T Consensus 438 A~~L~----e~~----Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~---- 481 (1102)
T PRK13826 438 AEGLE----KEA----GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA---- 481 (1102)
T ss_pred HHHHH----Hhh----CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----
Confidence 54432 211 1111 12222211111122345567799999999775
Q ss_pred HHHHHHHHHhCC-CCCeEEEEecc
Q 008443 287 EPQIREVMQNLP-DKHQTLLFSAT 309 (565)
Q Consensus 287 ~~~~~~i~~~~~-~~~~~l~~SAT 309 (565)
...+..++.... ...++|++.-+
T Consensus 482 ~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 482 SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCH
Confidence 445566666654 56788887655
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.66 E-value=0.00025 Score=60.86 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=54.1
Q ss_pred ecCCCChhhHHHHHHhhhcCC-eeEEEeccccccCCCccC--ccEEEEcCCCCC--------------------------
Q 008443 404 LHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMG--VAHVVNLDLPKT-------------------------- 454 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidip~--v~~Vi~~~~~~s-------------------------- 454 (565)
+..+....+...+++.|++.. ..||++|.-+.+|||+|+ ++.||....|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333444445788889998654 379999988999999997 568888886631
Q ss_pred -----ccchhhhhcccccCCCceeEEEEecc
Q 008443 455 -----VEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 455 -----~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
...+.|.+||+-|...+--++++++.
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12227888999998765445555543
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.59 E-value=0.0004 Score=59.72 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=60.1
Q ss_pred HHHHHHHHHHCCC---ceEEecCCCChhhHHHHHHhhhcCCe---eEEEeccc--cccCCCccC--ccEEEEcCCCCC--
Q 008443 387 CDEVSEALVAEGL---HAVALHGGRNQSDRESALRDFRNGST---NILVATDV--ASRGLDVMG--VAHVVNLDLPKT-- 454 (565)
Q Consensus 387 a~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~vLv~T~~--~~~Gidip~--v~~Vi~~~~~~s-- 454 (565)
.+.+.+.+...+. ....+.-+....+...+++.|++..- .||+++.- +.+|||+|+ ++.||....|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455555554432 11222222333345678888887543 69998877 999999998 578888887631
Q ss_pred -----------------------------ccchhhhhcccccCCCceeEEEEecc
Q 008443 455 -----------------------------VEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 455 -----------------------------~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
.....|.+||+-|...+--++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 11228999999998776556666654
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.57 E-value=0.0018 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
++.++|.|++|+|||.+. -.++..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~-~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI-KRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHH-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHH-HHHHHHh
Confidence 456899999999999875 3344433
No 201
>PRK08181 transposase; Validated
Probab=97.55 E-value=0.0013 Score=62.98 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=67.4
Q ss_pred CCHHHHHHHH----HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 144 PTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 144 ~~~~Q~~al~----~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
+.+.|..++. .+..+++++++||+|+|||..+ ..+...+.. .|.+++|+. ..+|..++... ..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~-------~g~~v~f~~-~~~L~~~l~~a----~~ 154 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIE-------NGWRVLFTR-TTDLVQKLQVA----RR 154 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHH-------cCCceeeee-HHHHHHHHHHH----Hh
Confidence 4555665553 4447788999999999999875 444444444 266677664 34555443221 00
Q ss_pred cCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCC-HHHHHHHHHhCC
Q 008443 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF-EPQIREVMQNLP 298 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~-~~~~~~i~~~~~ 298 (565)
. .+.+.++.. +...++|||||++....... ...+..++....
T Consensus 155 ~------------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~ 197 (269)
T PRK08181 155 E------------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARY 197 (269)
T ss_pred C------------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 0 011112221 23578999999996543221 223445554433
Q ss_pred CCCeEEEEeccccHHHH
Q 008443 299 DKHQTLLFSATMPVEIE 315 (565)
Q Consensus 299 ~~~~~l~~SAT~~~~~~ 315 (565)
.+..+|+.|-.++.+..
T Consensus 198 ~~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 198 ERRSILITANQPFGEWN 214 (269)
T ss_pred hCCCEEEEcCCCHHHHH
Confidence 33457777766655433
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.52 E-value=0.00034 Score=70.84 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHH------hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH--HHHH
Q 008443 143 RPTSIQAQAMPVA------LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI--EKEV 214 (565)
Q Consensus 143 ~~~~~Q~~al~~l------~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~--~~~~ 214 (565)
+|++.|+.++..+ ..+..++|.|+-|+|||+++ ..+...+.. .++.+++++||-.-|..+ -.++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~------~~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS------RGKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc------ccceEEEecchHHHHHhccCCcch
Confidence 4788999999888 56778999999999999874 344433332 367799999997666544 2344
Q ss_pred HHHH
Q 008443 215 KALS 218 (565)
Q Consensus 215 ~~~~ 218 (565)
..++
T Consensus 73 hs~f 76 (364)
T PF05970_consen 73 HSFF 76 (364)
T ss_pred HHhc
Confidence 4444
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.48 E-value=0.0016 Score=56.34 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
++.+++.|++|+|||... -.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~-~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA-RAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHH
Confidence 567999999999999764 333333
No 204
>PRK06526 transposase; Provisional
Probab=97.46 E-value=0.00082 Score=64.03 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 153 ~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
+.+..+.+++++||+|+|||..+ ..+...+.. .|.+++|+..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa-~al~~~a~~-------~g~~v~f~t~ 134 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLA-IGLGIRACQ-------AGHRVLFATA 134 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHH-HHHHHHHHH-------CCCchhhhhH
Confidence 44556778999999999999886 444444443 2566776543
No 205
>PRK04296 thymidine kinase; Provisional
Probab=97.44 E-value=0.00021 Score=65.22 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=25.9
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
-.++.|++|+|||..+ +.++..+.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~-l~~~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTEL-LQRAYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHHH-------cCCeEEEEec
Confidence 3688999999999765 555555544 3677888866
No 206
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.39 E-value=0.00082 Score=71.83 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcC-----------C-------CC--C------
Q 008443 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-----------P-------VG--R------ 191 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~-----------~-------~~--~------ 191 (565)
.+|++.|...+..++ ...++++-.|||+|||+..+-..+.+..... . .. .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 378999988887776 4467999999999999876544444322211 0 00 0
Q ss_pred --------CCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 192 --------GDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 192 --------~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
-.-+++.|-.-|-.-+.|+.+++++..
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 013566777777777888888887743
No 207
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.38 E-value=0.00055 Score=68.03 Aligned_cols=123 Identities=23% Similarity=0.182 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCC
Q 008443 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~ 223 (565)
|++-|.+++.. ...+++|.|..|||||.+.+-.++. ++.... -...++|+|++|+..+.++.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~-ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAY-LLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHH-HHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHH-hhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 57889999988 5677999999999999987554444 444321 1356799999999999999999998875421
Q ss_pred ceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCC--CCceEEEecchh
Q 008443 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSL--SRVSFVILDEAD 279 (565)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~--~~~~~iIiDE~H 279 (565)
.. ................+.|+|...+...+.+..... -.-.+-|+|+..
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000001112222345688999988866554321111 112345667766
No 208
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.36 E-value=0.024 Score=69.15 Aligned_cols=135 Identities=13% Similarity=0.215 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHhcCC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 143 RPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
.+++-|++|+..++... -.+|.|+.|+|||.+ +..+..+.+. .|.+++.++|+..-+.++.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 68999999999998764 488999999999986 3444444443 47889999999776665544321110
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC-CC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~ 299 (565)
.....+...+.. ..-..|.+.++ ....++..-++|||||+-.+. ...+..++... +.
T Consensus 499 ------------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 499 ------------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQH 556 (1960)
T ss_pred ------------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhc
Confidence 001111111111 11122333333 223345567899999999775 45567777655 46
Q ss_pred CCeEEEEecc
Q 008443 300 KHQTLLFSAT 309 (565)
Q Consensus 300 ~~~~l~~SAT 309 (565)
+.++|++.-+
T Consensus 557 garvVlvGD~ 566 (1960)
T TIGR02760 557 NSKLILLNDS 566 (1960)
T ss_pred CCEEEEEcCh
Confidence 7888887655
No 209
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.32 E-value=3.9e-05 Score=81.28 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=55.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhc---CCeeEEEeccccccC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GSTNILVATDVASRG 437 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vLv~T~~~~~G 437 (565)
+++++||..-....+.+.+++...+ ....++|.....+|+..+++|.. ....+|++|.+.+.|
T Consensus 631 ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 631 GHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 4579999999999999999999988 88999999999999999999984 356789999876655
No 210
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.32 E-value=0.019 Score=60.84 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHh--------cCC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHH
Q 008443 143 RPTSIQAQAMPVAL--------SGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 143 ~~~~~Q~~al~~l~--------~~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~ 212 (565)
.+...|.+|+-... .|. .+||-...|.||--..+--+++..++ ..+++|++.-...|--...+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-------GRKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-------GRKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-------ccceeEEEEeccccccchhh
Confidence 46777888875543 233 26776666777654332334555554 36789999988888887777
Q ss_pred HHHHHHhcCCCceEEEEECC----CcHHHHHHHHhCCCeEEEECchHHHHHHHcC-C------------CCCCCceEEEe
Q 008443 213 EVKALSRSLDSFKTAIVVGG----TNIAEQRSELRGGVSIVVATPGRFLDHLQQG-N------------TSLSRVSFVIL 275 (565)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~------------~~~~~~~~iIi 275 (565)
.++..... ++.+..+..- ...++ .-.-+-.|+|+|+..|.-.-... . .--+.=++||+
T Consensus 337 DL~DigA~--~I~V~alnK~KYakIss~e---n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 337 DLRDIGAT--GIAVHALNKFKYAKISSKE---NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred chhhcCCC--Cccceehhhcccccccccc---cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 77766432 3333332111 00000 01122469999998874221100 0 11122368999
Q ss_pred cchhhhhhC---------CCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 276 DEADRMLDM---------GFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 276 DE~H~~~~~---------~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
||||...+. -.+..+..+-+.++ +.+++..|||-
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 999986541 14445556666665 66799999995
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.23 E-value=0.0031 Score=57.59 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
++++||||+|||.+. ..+..++..+ +.++.+++ ..|.=+.++.+.+.+.+ ++.+..........+
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~-------~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~~~~~- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLK-------GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTESDPAE- 70 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTSCHHH-
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhc-------cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcchhhHH-
Confidence 688999999999886 5555554442 44565555 23434444444444444 233222111111111
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 317 (565)
.+.+.+.. ...+++++|+||-+-+... ......+..++....+..-++.++||...+....
T Consensus 71 ----------------~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 71 ----------------IAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp ----------------HHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred ----------------HHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 11112211 1224588999999875432 1234556677777666556888999987655444
Q ss_pred HHhh
Q 008443 318 AQGY 321 (565)
Q Consensus 318 ~~~~ 321 (565)
+..+
T Consensus 133 ~~~~ 136 (196)
T PF00448_consen 133 ALAF 136 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 212
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.18 E-value=0.0069 Score=57.33 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHcCceEEecCCC-------------------CCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHH
Q 008443 89 LRFNPEQIEEVRLRLNVDVTVASGS-------------------VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQA 149 (565)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~ 149 (565)
.-+++.+.+.+......+....-.+ ..+|..+.+|+++++++-+.+.+
T Consensus 55 ~il~~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~------------- 121 (353)
T COG2805 55 EILNDDQRKILEENGELDFSYTLPGVARFRVNAFKQRGGYALVLRLIPSKIPTLEELGLPPIVRELA------------- 121 (353)
T ss_pred HHhCHHHHHHHHHhcceeEEEecCCcceEEeehhhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHH-------------
Confidence 3445666666666555544432221 35788899999999988665422
Q ss_pred HHHHHHhcCC--CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 150 QAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 150 ~al~~l~~~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
... =+||.||||||||... ..++.++-+.
T Consensus 122 -------~~~~GLILVTGpTGSGKSTTl-AamId~iN~~ 152 (353)
T COG2805 122 -------ESPRGLILVTGPTGSGKSTTL-AAMIDYINKH 152 (353)
T ss_pred -------hCCCceEEEeCCCCCcHHHHH-HHHHHHHhcc
Confidence 222 2899999999999874 5566665543
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=97.17 E-value=0.0055 Score=60.67 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCceEEEecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhh
Q 008443 268 SRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++++|+||.+.++.. ..+...++.+.....+...++.++||...+....+..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 3578999999998752 23455667777777777778888998876655555544
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.013 Score=59.27 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+.++++||||+|||.+.+- +...+.... ...+.++.++. +.+.-+..+ ++.+.... ++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aK-LA~~~~~~~---~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAK-LAAIYGINS---DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHhhh---ccCCCeEEEEeccCccHHHHHH---HHHHhhcC-CcceE---------
Confidence 3488999999999988633 333322110 01244555554 333333333 33333211 22221
Q ss_pred HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhCCCC-CeEEEEeccccH-H
Q 008443 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDK-HQTLLFSATMPV-E 313 (565)
Q Consensus 237 ~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~~-~~~l~~SAT~~~-~ 313 (565)
++-+++.+...+.. +.++++||||++.++.... ....+..++....+. -.+|.+|||... .
T Consensus 238 ------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 ------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred ------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 11133344443332 3578999999999765321 123455566655433 347888999864 3
Q ss_pred HHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHH
Q 008443 314 IEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (565)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 363 (565)
+...+..|-.-. --...+.+++...+.-.++..+...
T Consensus 302 ~~~~~~~~~~~~-------------~~~~I~TKlDet~~~G~~l~~~~~~ 338 (388)
T PRK12723 302 VKEIFHQFSPFS-------------YKTVIFTKLDETTCVGNLISLIYEM 338 (388)
T ss_pred HHHHHHHhcCCC-------------CCEEEEEeccCCCcchHHHHHHHHH
Confidence 444444442110 0112345555555655666655443
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.001 Score=57.11 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=27.2
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
+..+++.||+|+|||.+. ..++..+.. .+..++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~~-------~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELGP-------PGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccCC-------CCCCEEEECCEEcccc
Confidence 456899999999999875 333333221 1234788887654433
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=97.04 E-value=0.0059 Score=64.55 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|.|+|+..+..+..++-.++..+=..|||.+.+..++..+... .+..+++++|+..-+..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 368999999999886666678888889999998765444444332 35689999999999999988888776544
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCC--
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-- 299 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~-- 299 (565)
+.+.-..+..... ..-.+.++..|.+.|.+. ....-.++.++|+||+|...+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~~~---~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 132 PDFLQPGIVEWNK---GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHHhhcceeecCc---cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 3221100110000 000123455565554321 011222467899999997643 22333334333322
Q ss_pred CCeEEEEeccc
Q 008443 300 KHQTLLFSATM 310 (565)
Q Consensus 300 ~~~~l~~SAT~ 310 (565)
..+++.+|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455555554
No 217
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.01 Score=57.14 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
+..+++.|++|+|||..+ ..+...+..+ .+..++|+.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEEH-HHHHHH
Confidence 567999999999999875 4555555542 1566777664 344443
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.96 E-value=0.0015 Score=61.79 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.6
Q ss_pred CCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecccc
Q 008443 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 265 ~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.+...++.||+||||.|... -...++++++.+....++++.+.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 45566899999999988644 24557788888877778888776654
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.011 Score=59.24 Aligned_cols=130 Identities=20% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCC-CeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG-PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~-~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+..++++||||+|||.+. ..+...+... .| .++.++. ....-.-..+.++.+.... ++.+.
T Consensus 137 g~ii~lvGptGvGKTTti-akLA~~~~~~------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~~--------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT-AKLAARCVMR------FGASKVALLT-TDSYRIGGHEQLRIFGKIL-GVPVH--------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHh------cCCCeEEEEe-cccccccHHHHHHHHHHHc-CCceE---------
Confidence 456899999999999886 3333333221 13 3455544 2222111123333333221 22221
Q ss_pred HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhCCCCCeEEEEeccccHHH-
Q 008443 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEI- 314 (565)
Q Consensus 237 ~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~- 314 (565)
.+.+++.+...+. .+.+.++|+||++-+..... ....+..+.....+...+|.++||...+.
T Consensus 199 ------------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 199 ------------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ------------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 2233333333332 23457899999996442111 12223333222233344788899986543
Q ss_pred HHHHHhh
Q 008443 315 EALAQGY 321 (565)
Q Consensus 315 ~~~~~~~ 321 (565)
...+..|
T Consensus 263 ~evi~~f 269 (374)
T PRK14722 263 NEVVQAY 269 (374)
T ss_pred HHHHHHH
Confidence 4445544
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.015 Score=54.98 Aligned_cols=108 Identities=16% Similarity=0.303 Sum_probs=58.3
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
..+++.|++|+|||..+ ..+...+... +..++|+. ..+|. ..++.-+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~-------g~~v~~it-~~~l~----~~l~~~~~~----------~~------ 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLR-------GKSVLIIT-VADIM----SAMKDTFSN----------SE------ 150 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEE-HHHHH----HHHHHHHhh----------cc------
Confidence 36899999999999876 5555555542 56677763 23333 333322110 00
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHH-HHHHHHHhC-CCCCeEEEEeccccHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP-QIREVMQNL-PDKHQTLLFSATMPVEI 314 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~-~~~~i~~~~-~~~~~~l~~SAT~~~~~ 314 (565)
.+.+.+++. +..+++|||||++......+.. .+..|++.- .....+++.|--...++
T Consensus 151 ------------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 151 ------------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred ------------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 011122221 3468899999999765333332 344455432 22344666665554444
No 221
>PRK08116 hypothetical protein; Validated
Probab=96.88 E-value=0.02 Score=55.25 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=28.4
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
.+++.|++|+|||..+ ..+...+..+ +..++|+. ..+|+.++
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~-------~~~v~~~~-~~~ll~~i 157 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK-------GVPVIFVN-FPQLLNRI 157 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEE-HHHHHHHH
Confidence 4899999999999886 5566666653 44566654 34554433
No 222
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.86 E-value=0.0056 Score=68.01 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++-|++|+... ...++|.|..|||||.+..-. +.+++..... ...++|+|+.|+..+.++.+++.++++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~R-ia~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHR-IAWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHH-HHHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 35899999999753 457999999999999986444 4455543211 24579999999999999999988876320
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC---CCCCCceEEEecchhh
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN---TSLSRVSFVILDEADR 280 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~---~~~~~~~~iIiDE~H~ 280 (565)
...+.|+|...+...+.+.. ..+. -.+-|+|+.+.
T Consensus 77 -----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 -----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred -----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 02467889888764443321 1111 12456787764
No 223
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.86 E-value=0.0055 Score=68.02 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|++-|++|+... ...++|.|..|||||.+..-. +.+++..... .+.++|+|+-|+..+.++.+++.++++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~R-ia~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~- 81 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHR-IAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLLGTS- 81 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHH-HHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHhccC-
Confidence 5899999999753 457999999999999986444 4455543211 24569999999999999999998876320
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC---CCCCCceEEEecchhh
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN---TSLSRVSFVILDEADR 280 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~---~~~~~~~~iIiDE~H~ 280 (565)
...+.|+|...+...+.+.. ..+ .-.+-|+|+.+.
T Consensus 82 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 82 ----------------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDDQ 119 (721)
T ss_pred ----------------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 02467888888865443321 111 122456787663
No 224
>PRK08727 hypothetical protein; Validated
Probab=96.81 E-value=0.007 Score=57.14 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+.+++.|++|+|||... -.+...+.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~-~a~~~~~~~-------~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA-LALCAAAEQ-------AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEe
Confidence 34899999999999764 333344433 256677765
No 225
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.80 E-value=0.019 Score=62.52 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
++|.|+||+|||.+. -.++..+..
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELqe 807 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQH 807 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHH
Confidence 359999999999986 445555543
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.024 Score=58.38 Aligned_cols=128 Identities=17% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHH-hcCCCCCCCCCeEEEEc--CchhhHHHHHHHHHHHHhcCCCceEEEEECCCc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCV-AQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~-~~~~~~~~~~~~~Lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (565)
++.++++||||+|||.+.+ .+...+. .. .+.++.+|. |.+.-+. +.++.+.... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~-kLA~~~~~~~------~g~~V~li~~D~~r~~a~---eqL~~~a~~~-~vp~-------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA-KLAARYALLY------GKKKVALITLDTYRIGAV---EQLKTYAKIM-GIPV-------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHHhc------CCCeEEEEECCccHHHHH---HHHHHHHHHh-CCce--------
Confidence 4468899999999998763 3333332 21 245566554 2222222 2233322211 1111
Q ss_pred HHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHh-CCCCCeEEEEeccccH
Q 008443 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQN-LPDKHQTLLFSATMPV 312 (565)
Q Consensus 235 ~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~-~~~~~~~l~~SAT~~~ 312 (565)
.++.++..+...+.. +.++++||||.+-+.... .....+..++.. ..+...++.++||...
T Consensus 282 -------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 -------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred -------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 112233444444432 336899999998653221 122345555552 2223347888998864
Q ss_pred -HHHHHHHhh
Q 008443 313 -EIEALAQGY 321 (565)
Q Consensus 313 -~~~~~~~~~ 321 (565)
.+......|
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 445555544
No 227
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.76 E-value=0.0047 Score=67.77 Aligned_cols=71 Identities=24% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.|++-|++|+... ...++|.|..|||||.+.... +.+++..... .+.++|+|+.|+..+.++.+++...++
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~R-ia~Li~~~~v---~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNK-IAHLIRGCGY---QARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHH-HHHHHHhcCC---CHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999999763 457899999999999986444 4455543111 245799999999999999998888764
No 228
>PRK12377 putative replication protein; Provisional
Probab=96.72 E-value=0.022 Score=53.97 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~ 212 (565)
..+++.|++|+|||..+ ..+...+... +..++|+ +..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEEE-EHHHHHHHHHH
Confidence 56899999999999875 5555565542 5556554 44566555433
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.026 Score=56.46 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=66.9
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC--ch-hhHHHHHHHHHHHHhcCCCceEEEEECCCcH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP--TR-ELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P--~~-~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (565)
+.++++|+||+|||.... .+...+.. .+.++.++.- .+ .-+.|+. .+.... +
T Consensus 242 ~vI~LVGptGvGKTTTia-KLA~~L~~-------~GkkVglI~aDt~RiaAvEQLk----~yae~l-g------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA-KMAWQFHG-------KKKTVGFITTDHSRIGTVQQLQ----DYVKTI-G------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHH-HHHHHHHH-------cCCcEEEEecCCcchHHHHHHH----HHhhhc-C------------
Confidence 457899999999998753 33333333 2555665553 23 3333332 332111 1
Q ss_pred HHHHHHHhCCCeEE-EECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCCeEEEEecccc-H
Q 008443 236 AEQRSELRGGVSIV-VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-V 312 (565)
Q Consensus 236 ~~~~~~~~~~~~Il-v~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~-~ 312 (565)
+.++ ..++..+.+.+..-. .-.++++|+||-+=+.... .....+.+++....+..-+|.+|||.. .
T Consensus 297 ----------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 297 ----------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred ----------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 2222 234555554443210 0125889999998764422 123334555555444444666888764 4
Q ss_pred HHHHHHHhh
Q 008443 313 EIEALAQGY 321 (565)
Q Consensus 313 ~~~~~~~~~ 321 (565)
+....+..|
T Consensus 366 d~~~i~~~F 374 (436)
T PRK11889 366 DMIEIITNF 374 (436)
T ss_pred HHHHHHHHh
Confidence 556666655
No 230
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.71 E-value=0.0063 Score=67.75 Aligned_cols=153 Identities=17% Similarity=0.088 Sum_probs=88.7
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhc----------CCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQ----------TPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~----------~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
.|++++.+-..|.|||..-+...+...-.. .......-+..|||+| .++..||..++...... .+++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~--~lKv 449 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISS--LLKV 449 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccc--cceE
Confidence 456789999999999987543333221110 0000112345899999 58999999999988764 3566
Q ss_pred EEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC--------------CC----CC--CceEEEecchhhhhhCCC
Q 008443 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--------------TS----LS--RVSFVILDEADRMLDMGF 286 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--------------~~----~~--~~~~iIiDE~H~~~~~~~ 286 (565)
..+.|-....-......-.+|||++|+..|...+.... .. +- .+=-|++||++.+-..
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess-- 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS-- 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--
Confidence 66665322110000112359999999999965554321 00 10 1223899999966432
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccHHHH
Q 008443 287 EPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 287 ~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 315 (565)
.....+.+..++. ...=+.|+||-..+.
T Consensus 528 sS~~a~M~~rL~~-in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHA-INRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHHhhh-hceeeecCCchhhhh
Confidence 2333344444432 236789999865543
No 231
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.018 Score=57.21 Aligned_cols=43 Identities=14% Similarity=0.011 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHhcCC----CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 143 RPTSIQAQAMPVALSGR----DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~----~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
.++|||...+..+.... -.|+.||.|.|||..+ ..+...++..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 35789999998887543 2789999999999876 5555666543
No 232
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.67 E-value=0.012 Score=68.84 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
.|++-|++|+..++.+ +-++|.|..|+|||.+. -.++..+... ....+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHH
Confidence 6899999999999865 55899999999999873 2222222110 011366799999987666554
No 233
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.67 E-value=0.022 Score=57.65 Aligned_cols=75 Identities=17% Similarity=0.072 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 140 EYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 140 ~~~~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
.+...+|.|-+-+..+. .+.+.|+-+|+|+|||...+--++...+..+. ...++++-.-|..=.+....+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHH
Confidence 34566777876665544 44579999999999998765445555554432 24456776665555555555555
Q ss_pred HHH
Q 008443 216 ALS 218 (565)
Q Consensus 216 ~~~ 218 (565)
.+.
T Consensus 89 ~l~ 91 (755)
T KOG1131|consen 89 RLM 91 (755)
T ss_pred HHH
Confidence 554
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.65 E-value=0.021 Score=50.25 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=26.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
+++.|++|+|||... ..++..... .+..++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~-~~i~~~~~~-------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLA-LQLALNIAT-------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHH-HHHHHHHHh-------cCCEEEEEECCcchHH
Confidence 589999999999875 334333332 2566888877655443
No 235
>PRK05642 DNA replication initiation factor; Validated
Probab=96.62 E-value=0.013 Score=55.46 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=23.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
+.++++|++|+|||... ..+...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~-------~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ-------RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh-------CCCcEEEeeH
Confidence 45789999999999763 333333332 2566777654
No 236
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.61 E-value=0.0057 Score=58.22 Aligned_cols=79 Identities=16% Similarity=0.403 Sum_probs=57.5
Q ss_pred HHHHhhhcCCeeEEEeccccccCCCccCc--------cEEEEcCCCCCccchhhhhcccccCCCc-eeEEEEeccc---c
Q 008443 415 SALRDFRNGSTNILVATDVASRGLDVMGV--------AHVVNLDLPKTVEDYVHRIGRTGRGGSM-GQATSFYTDR---D 482 (565)
Q Consensus 415 ~~~~~f~~g~~~vLv~T~~~~~Gidip~v--------~~Vi~~~~~~s~~~~~Q~~GRagR~g~~-g~~~~~~~~~---d 482 (565)
...+.|.+|+.+|+|.+++.+.|+.+..- ++-|.+.+|||....+|+.||+.|.++. ...+.++... +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 45678999999999999999999988531 2337889999999999999999999984 3333333322 4
Q ss_pred HHHHHHHHHHH
Q 008443 483 MLLVAQIKKAI 493 (565)
Q Consensus 483 ~~~~~~l~~~~ 493 (565)
..+...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 237
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.61 E-value=0.076 Score=53.05 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc-hhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT-RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~-~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
++.+.++||||.|||.+.+=-+....+.. ++.+..||-+.+ |-=|..+.+.+.+.++ +.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA~EQLk~Ya~im~----vp~---------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGAVEQLKTYADIMG----VPL---------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhHHHHHHHHHHHhC----Cce----------
Confidence 56689999999999987532222222121 123334554443 2222222333333331 222
Q ss_pred HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCCeEEEEeccccH-HH
Q 008443 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPV-EI 314 (565)
Q Consensus 237 ~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~-~~ 314 (565)
.++-+|.-|...+. .+.++|+|.||=+-+.... .....+..++..-.+-.-.|.+|||... ++
T Consensus 264 -----------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 264 -----------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -----------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 34556666655543 3567899999988754322 1333445555554444447888998754 45
Q ss_pred HHHHHhhc
Q 008443 315 EALAQGYL 322 (565)
Q Consensus 315 ~~~~~~~~ 322 (565)
..+...|-
T Consensus 329 kei~~~f~ 336 (407)
T COG1419 329 KEIIKQFS 336 (407)
T ss_pred HHHHHHhc
Confidence 66666663
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.60 E-value=0.016 Score=63.26 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
..|++-|++|+-.- ..+++|.|..|||||.+. ..-+.+++.... -.+.++|+++.++..+..+.+++...+
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl-~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVL-VARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHH-HHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 56999999999643 356899999999999986 444445554321 135679999999999998888887765
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.013 Score=57.70 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=23.7
Q ss_pred EEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccH
Q 008443 272 FVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (565)
Q Consensus 272 ~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 312 (565)
+++|||+|++. ..+-..++-.+... .+++..||-.+
T Consensus 107 iLflDEIHRfn----K~QQD~lLp~vE~G-~iilIGATTEN 142 (436)
T COG2256 107 ILFLDEIHRFN----KAQQDALLPHVENG-TIILIGATTEN 142 (436)
T ss_pred EEEEehhhhcC----hhhhhhhhhhhcCC-eEEEEeccCCC
Confidence 68899999975 23334455555544 48888888543
No 240
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.53 E-value=0.023 Score=51.56 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=33.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
++|.|++|+|||... +.++..... +|.+++|+... +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~-~~~~~~~~~-------~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFA-LQFLYAGLA-------RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999876 444444333 36778988764 5566666666554
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.039 Score=54.66 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=30.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
.+.++++.|+||+|||..+ ..+...++.. |..|+|+.- .+|..++
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~-------g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR-------GKSVIYRTA-DELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC-------CCeEEEEEH-HHHHHHH
Confidence 3467999999999999875 5556666553 666777553 4554443
No 242
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.50 E-value=0.027 Score=67.05 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHhcCC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 142 TRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..|++.|++|+..++.+. -++|.|..|+|||.+. -.++.. +... ....+.+++.++||---+.++.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~-~~~l--~~~~~~~V~glAPTgrAAk~L~e----~-- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSA-VNTL--PESERPRVVGLGPTHRAVGEMRS----A-- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHH-HHHh--hcccCceEEEECCcHHHHHHHHh----c--
Confidence 468999999999998764 4899999999999873 233332 2210 01135678999999766654322 1
Q ss_pred cCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHH----HcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHH
Q 008443 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL----QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~----~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~ 295 (565)
++. -.|..+|+... ..+..+...-++|||||+=.+. ...+..++.
T Consensus 1036 ---Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~ 1084 (1747)
T PRK13709 1036 ---GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYA 1084 (1747)
T ss_pred ---Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHH
Confidence 111 01111111100 0111122345899999999775 444566666
Q ss_pred hCCC-CCeEEEEecc
Q 008443 296 NLPD-KHQTLLFSAT 309 (565)
Q Consensus 296 ~~~~-~~~~l~~SAT 309 (565)
..+. .+++|++.-+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 6653 5778887655
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.053 Score=53.39 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHh----cCC---CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~----~~~---~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
..++|+|..++..+. .++ -.|+.||.|+||+..+ ..+...++...+.. .+ -++ .+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~--~~-----~c~----------~c 64 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDP--AA-----AQR----------TR 64 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCC--CC-----cch----------HH
Confidence 467899999998876 333 2789999999999876 55666666542110 00 011 11
Q ss_pred HHHH-hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHH
Q 008443 215 KALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (565)
Q Consensus 215 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i 293 (565)
+.+. +.++++.......+.... .....|.|-..-.+.+.+... -.....+++|||++|.|... -.+.+.++
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~-p~~g~~kV~iI~~ae~m~~~-AaNaLLKt 136 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT-PQYGIAQVVIVDPADAINRA-ACNALLKT 136 (319)
T ss_pred HHHhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC-cccCCcEEEEeccHhhhCHH-HHHHHHHH
Confidence 1111 223343332111110000 000112221111222222221 12245889999999988633 24455566
Q ss_pred HHhCCCCCeEEEEecccc
Q 008443 294 MQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 294 ~~~~~~~~~~l~~SAT~~ 311 (565)
++.-+++..+|+.|..+.
T Consensus 137 LEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 137 LEEPSPGRYLWLISAQPA 154 (319)
T ss_pred hhCCCCCCeEEEEECChh
Confidence 666666776777765554
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.46 E-value=0.018 Score=55.35 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=32.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhc-CCCCC---CCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGR---GDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~-~~~~~---~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+++++|+||.|||.+. +++... ++... ..-|.+++-+|...-....+..+-..+
T Consensus 63 ~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred ceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 6999999999999853 233322 21111 122556666777766666666655544
No 245
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.46 E-value=0.015 Score=68.19 Aligned_cols=123 Identities=24% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCC
Q 008443 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~ 223 (565)
+|+.|.+|+.. .+++++|.|.-|||||.+..-.++..+... ....++|+|+=|+..+.++.+++.+.+...
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-- 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-- 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH--
Confidence 58899999974 688999999999999998755555544432 123459999999999999999988876532
Q ss_pred ceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCC--ceEEEecchhh
Q 008443 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR--VSFVILDEADR 280 (565)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~--~~~iIiDE~H~ 280 (565)
+. .........+.+..-...-|+|...++..+.+.....-+ ..+=|.||...
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11 011111122233333456799999997666554322111 23445888774
No 246
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.46 E-value=0.044 Score=48.42 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHH
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEI 314 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 314 (565)
...+++||||+|.|... -...+.++++.-+.+..++++|..+..-+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 46899999999988643 35567777887777887777776665433
No 247
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.43 E-value=0.019 Score=54.36 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=24.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
+..++++||+|+|||... ..+...+.. .+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl-~a~~~~~~~-------~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL-HAACAELSQ-------RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEEH
Confidence 356899999999999764 333343333 2566777654
No 248
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.42 E-value=0.0087 Score=56.24 Aligned_cols=86 Identities=27% Similarity=0.374 Sum_probs=62.6
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCC-cHHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCc
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRV 270 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 270 (565)
..|.+|||+..--=+-.+.+.++.+-.. +..++-+..-. ...++...+. ...+|.||||+++..++..+.+.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 5688999998755555666666555211 23344444443 5666666665 478999999999999999999999999
Q ss_pred eEEEecchhh
Q 008443 271 SFVILDEADR 280 (565)
Q Consensus 271 ~~iIiDE~H~ 280 (565)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 249
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.41 E-value=0.027 Score=58.59 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=59.9
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+.+++.|++|+|||... ..+...+.... .+.+++|+.. .++..+....+... .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l~~~-----~--------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDILQKT-----H--------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHHHh-----h---------------
Confidence 34889999999999764 44444444321 3566777666 45555544443320 0
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhCC-CCCeEEEEeccccHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEI 314 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~ 314 (565)
+.+..... .+.+.++|||||+|.+.... ....+..+++.+. .+.|+|+.|-.+|..+
T Consensus 195 ---------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ---------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ---------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 00111111 12357899999999775321 2233444444432 2346776666665544
No 250
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.41 E-value=0.017 Score=59.81 Aligned_cols=112 Identities=14% Similarity=0.269 Sum_probs=61.5
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+.+++.|++|+|||... -.+...+... +.+++|+.. ..+..+....++. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~---------------~------ 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS---------------G------ 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc---------------c------
Confidence 35899999999999875 4455555442 566888764 3443332222110 0
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhC-CCCCeEEEEeccccHHHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIEA 316 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~ 316 (565)
..+.+.. .....++++|||+|.+.... ....+..+++.+ ..+.++|+.|.+++.++..
T Consensus 192 -------------~~~~f~~-------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 192 -------------EMQRFRQ-------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred -------------hHHHHHH-------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 0011111 12357899999999876432 223333444332 2345677777666766654
Q ss_pred HHHh
Q 008443 317 LAQG 320 (565)
Q Consensus 317 ~~~~ 320 (565)
+...
T Consensus 252 l~~r 255 (445)
T PRK12422 252 MEER 255 (445)
T ss_pred hHHH
Confidence 4333
No 251
>PRK06893 DNA replication initiation factor; Validated
Probab=96.39 E-value=0.0086 Score=56.42 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCceEEEecchhhhhhC-CCHHHHHHHHHhCCC-CCeEEEEecccc
Q 008443 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLPD-KHQTLLFSATMP 311 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~-~~~~l~~SAT~~ 311 (565)
.+.++|||||+|.+... .....+..+++.... +.+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 35789999999987532 222334444544432 344666666643
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.37 E-value=0.026 Score=53.07 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.|++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3457999999999999875
No 253
>PLN03025 replication factor C subunit; Provisional
Probab=96.31 E-value=0.043 Score=54.59 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=25.1
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++|||||+|.+.... ...+.++++..+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 57899999999886432 344566666655556555443
No 254
>PF13173 AAA_14: AAA domain
Probab=96.25 E-value=0.055 Score=45.69 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=25.6
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
.-.+|+|||+|.+.+ +...++.+.+.. ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998753 466677777755 45666654444
No 255
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.11 Score=54.26 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+.+.++|+||+|||.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556889999999999876
No 256
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.20 E-value=0.027 Score=58.95 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
+.+++.|++|+|||... -.+...+.+.. .+.+++++.. .++..+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~-----~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN-----PNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHH
Confidence 35899999999999875 44555554431 2455777644 445443
No 257
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.19 E-value=0.059 Score=53.60 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=26.8
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
..++|||||+|.+........+..+++..+.+.++++.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999987332234556667777777776665443
No 258
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.15 E-value=0.022 Score=60.05 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHHh-----cC----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 146 SIQAQAMPVAL-----SG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 146 ~~Q~~al~~l~-----~~----~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
|+|+-.+..+. .| +.+++.-+=|-|||.......+..++-. ...+..+++++++++-+..+++.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 57887777766 22 2478888999999987655444444332 12467899999999999999999999
Q ss_pred HHhcCC
Q 008443 217 LSRSLD 222 (565)
Q Consensus 217 ~~~~~~ 222 (565)
++...+
T Consensus 77 ~i~~~~ 82 (477)
T PF03354_consen 77 MIEASP 82 (477)
T ss_pred HHHhCh
Confidence 886543
No 259
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.14 E-value=0.015 Score=62.19 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHH-HHHHHHHh
Q 008443 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~-~~~~~~~~ 219 (565)
..+|+|.+.++.+... +.+.+..++-+|||.+. +.++-+.+... ..-+|++.|+.++++++. .++..++.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999999998654 46899999999999965 55555555542 344999999999999887 56777776
Q ss_pred cCCCceEEEEE---CCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh----CC-CHHHHH
Q 008443 220 SLDSFKTAIVV---GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD----MG-FEPQIR 291 (565)
Q Consensus 220 ~~~~~~~~~~~---g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~----~~-~~~~~~ 291 (565)
..+.+...+.. ...........+. +..+.++...+-. .+.-..+++|++||++..-. +| ......
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~ 161 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAE 161 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCc------ccccCCcCEEEEechhhccccCccCCCHHHHHH
Confidence 65443322211 0111111111222 3334443322221 12234588999999998742 11 223333
Q ss_pred HHHHhCCCCCeEEEEeccccHH
Q 008443 292 EVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 292 ~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
+-...+.... .+++..||...
T Consensus 162 ~R~~tf~~~~-K~~~~STPt~~ 182 (557)
T PF05876_consen 162 KRTKTFGSNR-KILRISTPTIE 182 (557)
T ss_pred HHHhhhccCc-EEEEeCCCCCC
Confidence 3334443233 55566666443
No 260
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.09 E-value=0.11 Score=55.49 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=76.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC------C-ceEEEE
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD------S-FKTAIV 229 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~------~-~~~~~~ 229 (565)
+.+-.++.+|=|.|||.+..+.+. .+... .+.+++|.+|...-+.++++.+...+.... . ..+...
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~v 258 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTL 258 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEe
Confidence 445578899999999988644333 33332 267899999999999999998888886321 1 111112
Q ss_pred ECCCcHHHH---HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC-CCCeEEE
Q 008443 230 VGGTNIAEQ---RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLL 305 (565)
Q Consensus 230 ~g~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-~~~~~l~ 305 (565)
.|+...-.. .....+...|.+++.. .+...-..+++||||||+.+.. ..+..++-.+. ...++++
T Consensus 259 kgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~Ii 327 (752)
T PHA03333 259 KGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQIH 327 (752)
T ss_pred eCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCceEE
Confidence 222100000 0000011334444332 1122334578999999997753 44455554443 3455777
Q ss_pred Eeccc
Q 008443 306 FSATM 310 (565)
Q Consensus 306 ~SAT~ 310 (565)
+|.+-
T Consensus 328 ISS~~ 332 (752)
T PHA03333 328 ISSPV 332 (752)
T ss_pred EeCCC
Confidence 77665
No 261
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.065 Score=53.28 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhc--CC---CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 144 PTSIQAQAMPVALS--GR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 144 ~~~~Q~~al~~l~~--~~---~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
++|||...+..+.. ++ -.|+.||.|.||+..+ ..+...++..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCC
Confidence 36788888887763 32 3789999999999876 5566666654
No 262
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.02 E-value=0.038 Score=67.47 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHhcCC--CEEEEccCCCchHHHHH--HHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 142 TRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFT--IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~--~~lv~a~TGsGKT~~~~--l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
..+++.|++|+..++.+. -++|.|..|+|||.+.. +..+..+.+. .+.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHH
Confidence 468999999999988664 47889999999998641 1223333332 367799999996666544
No 263
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.02 E-value=0.052 Score=55.84 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.+++|.|++|+|||.+. -.++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 46999999999999875 445554433
No 264
>PRK09183 transposase/IS protein; Provisional
Probab=96.01 E-value=0.065 Score=51.42 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=26.6
Q ss_pred HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 155 l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+..+.++++.||+|+|||..+. .+...+.. .|..++|+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~-al~~~a~~-------~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI-ALGYEAVR-------AGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEe
Confidence 4567889999999999998763 23332222 266677764
No 265
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.01 E-value=0.042 Score=51.68 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
++.+++.|++|+|||..+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999764
No 266
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.99 E-value=0.035 Score=57.13 Aligned_cols=145 Identities=13% Similarity=0.221 Sum_probs=81.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh-hHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~-L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.++.|..|||||.+.++.++..++... .+.+++++-++.. |..-+...+...+... ++....-...... ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM--EI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc--EE
Confidence 578999999999998888887777641 2567888888876 6666777777666543 2211111111100 00
Q ss_pred HHHhCCCeEEEECc-hHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC--CCCeEEEEeccccHHHHH
Q 008443 240 SELRGGVSIVVATP-GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKHQTLLFSATMPVEIEA 316 (565)
Q Consensus 240 ~~~~~~~~Ilv~T~-~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~~~ 316 (565)
.....+..|+|..- +...+ + .....++++.+||+..+... .+..++..++ .....+.+|.+|.....-
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 00111345666554 22211 1 12233689999999987533 3444444443 121247889898754333
Q ss_pred HHHhhc
Q 008443 317 LAQGYL 322 (565)
Q Consensus 317 ~~~~~~ 322 (565)
+...+.
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 344443
No 267
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.064 Score=57.18 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
..++++||||+|+|....+ +.+.++++.-+.+..+|+.|.-+.
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCChH
Confidence 4688999999999864432 334445555455666666655443
No 268
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.98 E-value=0.073 Score=55.02 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||.++
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999875
No 269
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.95 E-value=0.053 Score=52.58 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=33.8
Q ss_pred hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|.-+++.|++|+|||... ..++..+... .+..++|+.-. .-..++...+...
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~-~~~~~~~~~~------~g~~vl~iS~E-~~~~~~~~r~~~~ 81 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFL-REYALDLITQ------HGVRVGTISLE-EPVVRTARRLLGQ 81 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHH-HHHHHHHHHh------cCceEEEEEcc-cCHHHHHHHHHHH
Confidence 35667899999999999865 3333333321 26678888753 3344555555444
No 270
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.94 E-value=0.097 Score=44.15 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.3
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+|+.||.|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999874
No 271
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.13 Score=54.46 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=26.4
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|.+.... ...+.+.++..++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 358899999999886543 234455666666666666655
No 272
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.085 Score=57.17 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
..++++||||+|.|.... .+.+.++++.-+++..+|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 358899999999887543 3445556666666665555543
No 273
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.86 E-value=0.022 Score=54.94 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.++++.||+|+|||.++
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999876
No 274
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.85 E-value=0.065 Score=55.29 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=25.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
.+++.|++|+|||... ..+...+.+.. .+.+++++..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~-----~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN-----PNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCcEEEEEH
Confidence 4789999999999875 44555554431 2456777753
No 275
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.85 E-value=0.024 Score=51.94 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
++|++||.|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5899999999999875
No 276
>PHA00729 NTP-binding motif containing protein
Probab=95.82 E-value=0.077 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.6
Q ss_pred CEEEEccCCCchHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
++++.|++|+|||..+ ..+..
T Consensus 19 nIlItG~pGvGKT~LA-~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA-LKVAR 39 (226)
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6999999999999876 33433
No 277
>PRK04195 replication factor C large subunit; Provisional
Probab=95.80 E-value=0.079 Score=55.97 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999875
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.79 E-value=0.14 Score=52.29 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=64.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
++++|++|+|||.+. ..+...+.. .|.++++++ +.+.-+.++.+.+.... ++.+.....+......
T Consensus 103 i~lvG~~GvGKTTta-aKLA~~l~~-------~G~kV~lV~~D~~R~aA~eQLk~~a~~~----~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 103 IMFVGLQGSGKTTTC-TKLAYYYQR-------KGFKPCLVCADTFRAGAFDQLKQNATKA----RIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHH-------CCCCEEEEcCcccchhHHHHHHHHhhcc----CCeEEeecCCCCHHHH
Confidence 689999999999875 333333333 356677766 33444333333333221 2332222222111000
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCCeEEEEeccccHHHHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 317 (565)
..+.+.. ..-..+++||||=+-++-.. .....+..+.....+...++.++||...+....
T Consensus 171 -----------------~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 171 -----------------ASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred -----------------HHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 0001110 11135778888887654321 123444555555555555777888876555444
Q ss_pred HHhh
Q 008443 318 AQGY 321 (565)
Q Consensus 318 ~~~~ 321 (565)
+..|
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 5444
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.78 E-value=0.15 Score=52.55 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=31.2
Q ss_pred ceEEEecchhhhh-hCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhh
Q 008443 270 VSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 270 ~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++||||.+-+.. +...-..+..+.....+..-++.+.|+...+....+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 4899999995432 112233455555555566667788888765544444443
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.77 E-value=0.095 Score=49.30 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=33.6
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-+++.|++|+|||..+ +.++..... ++.+++|+... +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHH
Confidence 4667899999999999875 344444443 36678998854 333455555544
No 281
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.76 E-value=0.051 Score=54.54 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=25.9
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
...++|||||+|.+... ....+..++...++..++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987532 23445666666666666665443
No 282
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.75 E-value=0.046 Score=51.00 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=58.8
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.+++.|++|+|||-.. ..+...+.+.. .+.+++|+... +........++. +
T Consensus 36 ~l~l~G~~G~GKTHLL-~Ai~~~~~~~~-----~~~~v~y~~~~-~f~~~~~~~~~~---------------~------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLL-QAIANEAQKQH-----PGKRVVYLSAE-EFIREFADALRD---------------G------- 86 (219)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHHHHC-----TTS-EEEEEHH-HHHHHHHHHHHT---------------T-------
T ss_pred ceEEECCCCCCHHHHH-HHHHHHHHhcc-----ccccceeecHH-HHHHHHHHHHHc---------------c-------
Confidence 4899999999999853 44555555432 25667877653 343332222221 0
Q ss_pred HHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhC-CCCCeEEEEeccccHHH
Q 008443 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEI 314 (565)
Q Consensus 240 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~ 314 (565)
..+.+.+. +...++++||.+|.+.... ....+..+++.+ ..+.++|+.|..+|.++
T Consensus 87 ------------~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ------------EIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ------------SHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ------------cchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 01112211 2368899999999886431 223334444443 23457777776776554
No 283
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.75 E-value=0.64 Score=49.27 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=69.4
Q ss_pred eEEEEEcchhhHHHHHHHHHHCCCc-------eEEecCCCChhhHHHHHHhhh----cCCeeEEEec--cccccCCCccC
Q 008443 376 LTIVFVERKTRCDEVSEALVAEGLH-------AVALHGGRNQSDRESALRDFR----NGSTNILVAT--DVASRGLDVMG 442 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T--~~~~~Gidip~ 442 (565)
-+++|+++.+....+.+...+.|+. .+.+-...+ -+.+++.+. .|.-.+|+++ .-+++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 3999999999999999988876542 222222222 345555554 3555677766 78899999977
Q ss_pred --ccEEEEcCCCCC--------------------c------------cchhhhhcccccCCCceeEEEEeccc
Q 008443 443 --VAHVVNLDLPKT--------------------V------------EDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 443 --v~~Vi~~~~~~s--------------------~------------~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
.+.||+++.|.. + ....|-+|||-|.-++=.++++++.+
T Consensus 708 ~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred ccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 788998888741 0 11268888888887766666666543
No 284
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.11 Score=53.98 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=26.0
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
+.+++.|++|+|||... ..+...+.+.. .+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~-----~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH
Confidence 35899999999999875 44555555431 2456888764
No 285
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.67 E-value=0.05 Score=60.72 Aligned_cols=72 Identities=28% Similarity=0.275 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..|++-|.+|+... ..+++|.|..|||||.+..-. +.+++..... .+.++|+++-|+..+..+.+++.++++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~r-ia~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHR-IAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHH-HHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999753 457999999999999986444 4455543211 245799999999999999999988765
No 286
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.63 E-value=0.052 Score=60.02 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
|++-|++++.. ...+++|.|..|||||.+.+- -+.+++..... ...++|+|+.|+..+.++.+++.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~-ri~~ll~~~~~---~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITN-KIAYLIQNCGY---KARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78999999875 346799999999999998644 44445543111 246799999999999999999988765
No 287
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.61 E-value=0.14 Score=56.38 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.3
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHH
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 313 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 313 (565)
...+|||||+|++.. .....++..+. +.++++.++|-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCCh
Confidence 456899999998752 22233444443 34577777775443
No 288
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.59 E-value=0.04 Score=58.55 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=59.0
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (565)
.++|+|++|+|||... ..+...+.... .+.+++|+.- .+++.+....++. +
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~-----~g~~V~Yita-eef~~el~~al~~---------------~------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLY-----PGTRVRYVSS-EEFTNEFINSIRD---------------G------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEeeH-HHHHHHHHHHHHh---------------c-------
Confidence 4899999999999764 34444443321 2566777654 4454443322211 0
Q ss_pred HHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC-CHHHHHHHHHhCCC-CCeEEEEeccccHHHH
Q 008443 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIE 315 (565)
Q Consensus 240 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~ 315 (565)
..+.+.. .+.++++|||||+|.+.... ....+..+++.+.. +.++|+.|-.++.++.
T Consensus 367 ------------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 367 ------------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred ------------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 0011111 12357899999999875432 12333444444432 4567776666665554
No 289
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.17 Score=49.93 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHh----cCC---CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 144 ~~~~Q~~al~~l~----~~~---~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
.+|+|+..+..+. .|+ -.|+.||.|.||+..+ ..+...++..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcCC
Confidence 3677777776665 444 3679999999999876 5566666653
No 290
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.57 E-value=0.15 Score=51.37 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=59.5
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
+.+.+.|+.|.|||+. +.++...+.- ..+.+ +|.-+...++.+.+.++- |+...
T Consensus 63 ~GlYl~G~vG~GKT~L--md~f~~~lp~-----~~k~R----~HFh~Fm~~vh~~l~~~~------------~~~~~--- 116 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTML--MDLFYDSLPI-----KRKRR----VHFHEFMLDVHSRLHQLR------------GQDDP--- 116 (362)
T ss_pred ceEEEECCCCCchhHH--HHHHHHhCCc-----ccccc----ccccHHHHHHHHHHHHHh------------CCCcc---
Confidence 4589999999999975 4444433221 12233 354566666666665553 11100
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC-CCCCeEEEEeccccHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 314 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~ 314 (565)
...+.+.+ .+...+|++||+|- .+-+-.-.+.+++..+ ..+.-+|..|-++|.++
T Consensus 117 --------------l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 --------------LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred --------------HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00111221 23566899999993 2322233344444433 44666788888888765
No 291
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.16 Score=54.89 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=25.3
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|+|.... ...+.++++.-++...+|+.|
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEec
Confidence 368899999999887443 334455566555555555553
No 292
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.12 Score=46.14 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
.++.||+.||||.-. +..+..... .|.++++..|...- .++. -.+..-.|-
T Consensus 7 ~~i~gpM~SGKT~eL-l~r~~~~~~-------~g~~v~vfkp~iD~----------R~~~---~~V~Sr~G~-------- 57 (201)
T COG1435 7 EFIYGPMFSGKTEEL-LRRARRYKE-------AGMKVLVFKPAIDT----------RYGV---GKVSSRIGL-------- 57 (201)
T ss_pred EEEEccCcCcchHHH-HHHHHHHHH-------cCCeEEEEeccccc----------cccc---ceeeeccCC--------
Confidence 588999999999864 444444433 37779998885221 1110 111111121
Q ss_pred HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC
Q 008443 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (565)
Q Consensus 241 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~ 297 (565)
...-++|-....+++.+......+. ++.|.|||++-+.. ..-..+.++.+.+
T Consensus 58 ---~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~-~~v~~l~~lad~l 109 (201)
T COG1435 58 ---SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE-ELVYVLNELADRL 109 (201)
T ss_pred ---cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH-HHHHHHHHHHhhc
Confidence 1134566677777777766433322 88999999996542 2333444555443
No 293
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.52 E-value=0.14 Score=49.42 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHh----cCC-CEEEEccCCCchHHHH
Q 008443 143 RPTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAF 175 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~-~~lv~a~TGsGKT~~~ 175 (565)
.+++.+.+++..+. .+. .+++.|++|+|||.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 45666666776653 233 4889999999999875
No 294
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.19 Score=51.04 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=30.7
Q ss_pred CCceEEEecchhhhh-hCCCHHHHHHHHHhCC---CCCeEEEEeccccH-HHHHHHHhh
Q 008443 268 SRVSFVILDEADRML-DMGFEPQIREVMQNLP---DKHQTLLFSATMPV-EIEALAQGY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~-~~~~~~~~~ 321 (565)
.++++||||=+-+.. +......+..++.... +.-.+|.++||... .+......|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 467899999765432 1122334555555442 22347888999876 444444444
No 295
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.50 E-value=0.0075 Score=53.54 Aligned_cols=123 Identities=22% Similarity=0.328 Sum_probs=52.9
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE 241 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 241 (565)
++.|+=|-|||.+.-+.+ ..+... ...++++.+|+.+-+..+++.+...+... +.+.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~---~~~~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKK---KRIGQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccc---ccccccccc
Confidence 578999999997643322 222221 12469999999988887776665544322 1111000 000000001
Q ss_pred HhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 242 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 242 ~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
......|-+..|+.+. ......|++|||||=.+- .+.+..++...+ .+.||.|.
T Consensus 70 ~~~~~~i~f~~Pd~l~-------~~~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi 123 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELL-------AEKPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTI 123 (177)
T ss_dssp ---CCC--B--HHHHC-------CT----SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEB
T ss_pred ccccceEEEECCHHHH-------hCcCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeec
Confidence 1134667788887775 222346899999998764 556666665443 56677776
No 296
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.13 Score=50.95 Aligned_cols=40 Identities=20% Similarity=0.068 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhc--CC---CEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 145 TSIQAQAMPVALS--GR---DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 145 ~~~Q~~al~~l~~--~~---~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+|+|+..+..+.. ++ -.|+.||.|.|||..+ ..+...++.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~llC 47 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALLC 47 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHcC
Confidence 6888888888773 33 3789999999999876 545555554
No 297
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.083 Score=53.33 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=32.0
Q ss_pred CceEEEecchhhhhhCC-CHHHHHHHHHhCCC-CCeEEEEeccccHHHHHH
Q 008443 269 RVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~ 317 (565)
++++++||.++.+.... ....+-.+++.+.. +.|+|+.|..+|.++...
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 58899999999876542 33334444544432 347888888887776533
No 298
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.47 E-value=0.084 Score=53.96 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
+.......+..+..++++++.|++|+|||.++
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455666777778899999999999999876
No 299
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.44 E-value=0.025 Score=50.84 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 152 MPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 152 l~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
...+..++++++.|++|+|||..+ ..+...+... |..++|+. ..+|..+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLFIT-ASDLLDE 89 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEEE-HHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeEee-cCceecc
Confidence 334446778999999999999986 5566666653 66677764 3455544
No 300
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.43 E-value=0.27 Score=47.26 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=79.4
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC-c--hhhHHHHHHHHHHHHhcCCCceEEEEECCCc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP-T--RELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P-~--~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (565)
+..++++|++|+|||..+.. +...+.. .+.++.++.- + .+.+.|+....... ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~-l~~~l~~-------~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~---------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAK-MAWQFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKTI-----GF---------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHHHHHH-------cCCeEEEEecCCCCHHHHHHHHHHhhhc-----Cc----------
Confidence 35689999999999987533 2222222 2445555553 2 24555544322211 11
Q ss_pred HHHHHHHHhCCCeEEE-ECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCCeEEEEecccc-
Q 008443 235 IAEQRSELRGGVSIVV-ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP- 311 (565)
Q Consensus 235 ~~~~~~~~~~~~~Ilv-~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~- 311 (565)
.+.. .++..+.+.+..- ....++++||||-+=+.... .....+..++....+...++.++||..
T Consensus 132 ------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 132 ------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 1211 2333443333210 11235899999998665321 123344555555555544677899864
Q ss_pred HHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008443 312 VEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 362 (565)
.+....++.|-.- .. -.-.+.+++...+.-.++.....
T Consensus 199 ~d~~~~~~~f~~~-----------~~--~~~I~TKlDet~~~G~~l~~~~~ 236 (270)
T PRK06731 199 KDMIEIITNFKDI-----------HI--DGIVFTKFDETASSGELLKIPAV 236 (270)
T ss_pred HHHHHHHHHhCCC-----------CC--CEEEEEeecCCCCccHHHHHHHH
Confidence 4566666655320 00 11234555555555555555544
No 301
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.29 Score=46.50 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHhcCCC-----EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 153 PVALSGRD-----LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 153 ~~l~~~~~-----~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
|.+..|+. +|+.||.|+||++.+ -++... .....|-+....|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLA-KAVATE-----------AnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLA-KAVATE-----------ANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHH-HHHHhh-----------cCCceEEeehHHHHHHHhccHHHHH
Confidence 45556643 899999999999765 222211 2247888888888777665554443
No 302
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.17 Score=55.42 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=34.7
Q ss_pred CchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCCeEEEEeccccHH-HHHHHHhh
Q 008443 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVE-IEALAQGY 321 (565)
Q Consensus 252 T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~-~~~~~~~~ 321 (565)
+|+.+.+.+.. +.+.++|+||=+=+.-.. .....+..+.....+...+|.++||.... +...++.|
T Consensus 250 ~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 250 DAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 55555544442 335678888877754321 12233333443344444577788887533 34455544
No 303
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.16 Score=51.25 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
++++.|+||||||.+. -.++..+...
T Consensus 44 n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 44 NIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred cEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 5999999999999886 4455555543
No 304
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.27 E-value=0.025 Score=51.52 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 265 ~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
++....+.||+||||.|.+ |-.+.+++.++.....+++.+..-+
T Consensus 109 lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 4557789999999998754 3456677777777666666655444
No 305
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.22 Score=49.62 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHh----cCC---CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 144 ~~~~Q~~al~~l~----~~~---~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
++|||...+..+. .++ -.|+.||.|.||+..+ ..+...++..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~ 51 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQ 51 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 5778888887775 344 3689999999999876 5566666653
No 306
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.17 Score=56.46 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|+|.... .+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 468899999999987532 344556666666666555554
No 307
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.13 Score=53.22 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=16.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+|++||.|+|||.++ ..+...+
T Consensus 43 ~Lf~GP~GtGKTTlA-riLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIA-RILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHH-HHHHHhc
Confidence 699999999999886 3344433
No 308
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.26 Score=53.06 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
....++|||||+|.+.... ...+.+.++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3568899999999886432 233444555555666566554
No 309
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.23 E-value=0.12 Score=57.07 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=62.9
Q ss_pred eEEEEEcchhhHHHHHHHHHH----CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCCCccCccEEEE
Q 008443 376 LTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
++++.++++.-|...++.|.+ .++.+..++|+++..+|..+++.+.+|+.+|+|+|. .+...+.+.++.+||.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 599999999988877776654 478999999999999999999999999999999996 4566778888888875
No 310
>CHL00181 cbbX CbbX; Provisional
Probab=95.18 E-value=0.066 Score=52.15 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+.++++.||+|+|||.++
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446899999999999986
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.2 Score=50.04 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
++.++++||+|+|||... ..+...+..+ +.++.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~-akLA~~l~~~-------g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL-VKLGWQLLKQ-------NRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEe
Confidence 345789999999999875 3333333332 45565555
No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.13 E-value=0.75 Score=40.20 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=40.4
Q ss_pred CCCceEEEecchhhhhhCCC--HHHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
...+++||+||+=.....++ ...+..+++..++..-+|+.+-.++.++...+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998776663 345677788888777788888888877766544
No 313
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.10 E-value=0.43 Score=46.10 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCceEEEecchhhhhhC-CCHHHHHHHHHhCC------CCCeEEEEeccccHHHHHHHHhh
Q 008443 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLP------DKHQTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~------~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++++||||=+-++... .....+..+....+ +.-.++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45788999988765321 12234455544443 44457888888765444444443
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.10 E-value=0.14 Score=51.68 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||... +.+...+.. .+.+++|+.-. +-..|+..+..++
T Consensus 82 GslvLI~G~pG~GKStLl-lq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLL-LQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 445899999999999875 444444433 25679998765 4456666555544
No 315
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.11 Score=52.22 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=27.5
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
....+|||||+|.+.... ...+.++++.-+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECCh
Confidence 457899999999885332 344566666655556566666444
No 316
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.07 E-value=0.1 Score=50.80 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.++++||.|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 5899999999999865
No 317
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.05 E-value=0.17 Score=53.81 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=79.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC-CCceEEEEECCCcHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNIAE 237 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~ 237 (565)
+-.++..|==.|||++.. +++..++..- .|.++++++|...-+..+++++...+... +...+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 346888888999999754 5555555321 37889999999999999999998876532 1111212222 110
Q ss_pred HHHHHhCC--CeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC-CCCCeEEEEecccc
Q 008443 238 QRSELRGG--VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 311 (565)
Q Consensus 238 ~~~~~~~~--~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~ 311 (565)
. -.+..+ ..|.|+|- ...+...-..++++|||||+.+... .+..++-.+ ..+.++|.+|.|-.
T Consensus 326 ~-i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 326 S-FSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred E-EEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 0 011112 25666531 1112233447999999999988643 344444332 23677899988854
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.04 E-value=0.14 Score=53.28 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=34.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||... +.+...... .+.+++|+.-. +-..|+..+..++
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~-------~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAA-------AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 445899999999999875 444444332 26679998864 4456666665554
No 319
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.37 Score=47.49 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHh----cCC---CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 143 RPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 143 ~~~~~Q~~al~~l~----~~~---~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
.++|+|...+..+. .++ -.|+.||.|.||+..+ ..+...++..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 45778888877765 343 3789999999999876 5566666654
No 320
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.29 Score=51.19 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+....+ ..+.+.++.-++...+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 4689999999998864332 23444445444555445443
No 321
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.15 Score=50.81 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
..+.+|||||++.+... -...+.+.+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56899999999988642 34555666666666665665553
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.99 E-value=0.2 Score=50.80 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+....+ ..+.+.+...++...+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4578999999998864322 23444445444555555544
No 323
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.98 E-value=0.2 Score=55.44 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
..++|++||+|+|||.++
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999875
No 324
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.95 E-value=0.1 Score=51.35 Aligned_cols=65 Identities=28% Similarity=0.273 Sum_probs=42.2
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 134 KDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~al~~l~-~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
..+...|. +++.|.+.|..+. .+.++|++|+||||||... -.++..+...+ .+.+++.+=...||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC-----CCceEEEecCCccc
Confidence 44445554 5678888877665 4567999999999999864 44444443221 24467776666676
No 325
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.95 E-value=0.062 Score=54.32 Aligned_cols=143 Identities=15% Similarity=0.037 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHH
Q 008443 132 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 132 l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~ 211 (565)
+++.+++ ++..+...|.+|.-..-.|.. .|.|-.|||||.+.++.+.+.-.+. ...+++|.+-|+.|+.++.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn------Pd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN------PDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC------CCceEEEEeehHHHHHHHH
Confidence 3444432 345566778777655555655 6788899999998655544332222 3567999999999999998
Q ss_pred HHHHHHHhcC----C---CceEEEEECCCcHHHHH---HHHhCCCeEEEECch----HHHHHHHcCCCCCCCceEEEecc
Q 008443 212 KEVKALSRSL----D---SFKTAIVVGGTNIAEQR---SELRGGVSIVVATPG----RFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 212 ~~~~~~~~~~----~---~~~~~~~~g~~~~~~~~---~~~~~~~~Ilv~T~~----~l~~~~~~~~~~~~~~~~iIiDE 277 (565)
....+++-.. + ...+.--.||....-.. .....-..+-++-.+ .+...+.........+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 8887776211 1 12222233443322111 111122233333221 12222222223466799999999
Q ss_pred hhhhh
Q 008443 278 ADRML 282 (565)
Q Consensus 278 ~H~~~ 282 (565)
.+.+-
T Consensus 304 ~QDFP 308 (660)
T COG3972 304 SQDFP 308 (660)
T ss_pred cccCC
Confidence 99653
No 326
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.94 E-value=0.16 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=18.8
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
..++|.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999875 44555443
No 327
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.92 E-value=0.21 Score=55.08 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=72.6
Q ss_pred ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-CCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
....|....+..+...... +.++||.++++.-+..+.+.|.+. +..+..+||+++..+|.+...++.+|+.+
T Consensus 171 TGSGKT~v~l~~i~~~l~~-------g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~ 243 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQ-------GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK 243 (679)
T ss_pred CCChHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 3445655555444443322 225999999999999999999874 78899999999999999999999999999
Q ss_pred EEEeccccccCCCccCccEEEEcCC
Q 008443 427 ILVATDVASRGLDVMGVAHVVNLDL 451 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~ 451 (565)
|+|+|.... -+.+.++.+||.-+.
T Consensus 244 IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 244 VVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred EEEeccHHh-cccccCCCEEEEECC
Confidence 999997432 245677888876553
No 328
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.32 Score=52.22 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|++.... ...+.++++..++...+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 357899999999886433 334555566555555555544
No 329
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.90 E-value=0.51 Score=46.42 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
++.+++.|++|+|||..+ ..+...+.. .|..++|+.- .+|+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~-------~g~~v~~~~~-~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK-------KGVSSTLLHF-PEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH-------cCCCEEEEEH-HHHHHH
Confidence 456999999999999876 445555544 2555665532 244443
No 330
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.18 Score=55.85 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=24.8
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEE
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~ 306 (565)
..++++||||+|+|... -...+.++++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 35789999999998633 234445556655556655654
No 331
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.43 Score=48.18 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=64.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCC---CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~---~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
.|+.||.|+||+..+ ..+...++.+.+.... ..+..+-+++.-.-+. .+.. +.++++.+..-..+....
T Consensus 44 ~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~----~i~~--~~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 44 WLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR----RIAA--GAHGGLLTLERSWNEKGK- 115 (365)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHH----HHHc--cCCCCeEEEecccccccc-
Confidence 789999999999886 6677777765321110 0112233343322222 1221 223444433211111000
Q ss_pred HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecccc
Q 008443 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 238 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.....|.|-..-.+.+.+... .......+|||||+|.+... -...+.++++.-+....+|++|..+.
T Consensus 116 -----~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 116 -----RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred -----cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCch
Confidence 001223222222222222221 22346789999999987532 23445566665555555666665554
No 332
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.87 E-value=0.25 Score=53.42 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=25.2
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...++|||||+|.+.... ...+.+++...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999876432 233455555555566566655
No 333
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.24 Score=50.43 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...+++||||+|++.... ...+.++++.-+++..+|+.|.++
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECCh
Confidence 467899999999986432 234555555555555455555443
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=94.78 E-value=0.48 Score=48.80 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=22.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
++++|++|+|||.+. .-+..++..+ .|.++++|.
T Consensus 103 I~~vG~~GsGKTTta-akLA~~l~~~------~G~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTA-GKLAKYLKKK------KKKKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHH-HHHHHHHHHh------cCCcEEEEE
Confidence 688999999999876 3344444332 155666665
No 335
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.23 Score=53.11 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=25.5
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+.... ...+.+.++..++...+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 468899999999886442 233455555555566555555
No 336
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.77 E-value=0.56 Score=42.19 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=40.3
Q ss_pred CCCceEEEecchhhhhhCCCH--HHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 267 LSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
-..+++||+||+=...+.++. ..+..++...++..-+|+..-.++.++...+.
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 356899999999988887743 45667777777777788888778877666554
No 337
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.76 E-value=0.12 Score=51.11 Aligned_cols=66 Identities=26% Similarity=0.303 Sum_probs=43.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 133 MKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~al~~l~-~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
++.+...|. +++.|.+.+..+. .+++++++|+||+|||... -.++..+.... ...++++|-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 455555554 5677888887654 5668999999999999653 44444433221 24567777777776
No 338
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.37 Score=51.91 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|.+....+ +.+.+.++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4589999999999874432 22334444434455455544
No 339
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.72 E-value=0.13 Score=52.88 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhcCCC--EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 144 PTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~~~--~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+.+.|...+..+++... +|+.||||||||... ..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 47788888888776654 789999999999873 666666543
No 340
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.69 E-value=0.12 Score=49.42 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=34.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
++.++++.|++|+|||..+ .++...+.. .|.+|+| ++..+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~-------~g~sv~f-~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK-------AGISVLF-ITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH-------cCCeEEE-EEHHHHHHHHHHHH
Confidence 6778999999999999987 555555553 3666666 55567766655443
No 341
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.34 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=17.3
Q ss_pred CEEEEccCCCchHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.+|+.||.|+|||.++ ..+...+
T Consensus 45 a~Lf~Gp~G~GKTT~A-rilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSA-RIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHh
Confidence 4899999999999886 3344443
No 342
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.67 E-value=0.6 Score=50.81 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=83.4
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 136 IEFHEYTRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 136 l~~~~~~~~~~~Q~~al~~l~~~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
+......+....|.+.+..++..+ -+++.|.=|=|||.+.-+.+.. +.... ...+++|.+|+.+-++.+++.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 444444444444445555555544 4788999999999876544421 22210 134799999999998888877
Q ss_pred HHHHHhcCCCceEEEEECC-CcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHH
Q 008443 214 VKALSRSLDSFKTAIVVGG-TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 292 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 292 (565)
+.+-+... +......... .... ........|=+-+|.... ..-+++|||||=-+- .+.+.+
T Consensus 281 a~~~l~~l-g~~~~v~~d~~g~~~---~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 281 AGKGLEFL-GYKRKVAPDALGEIR---EVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHHhHHHh-CCcccccccccccee---eecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHH
Confidence 76666543 1211111100 0000 000112234445554332 126799999998654 566677
Q ss_pred HHHhCCCCCeEEEEeccc
Q 008443 293 VMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 293 i~~~~~~~~~~l~~SAT~ 310 (565)
++..++ .++||.|.
T Consensus 343 l~~~~~----rv~~sTTI 356 (758)
T COG1444 343 LLRRFP----RVLFSTTI 356 (758)
T ss_pred HHhhcC----ceEEEeee
Confidence 776653 68888897
No 343
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.66 E-value=0.55 Score=52.39 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.++|++||+|+|||.+.
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999875
No 344
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.3 Score=51.80 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=25.3
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|++.... ...+.+.++..++...+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986432 334555566555556555555
No 345
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.60 E-value=0.41 Score=47.51 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=25.2
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
..++|||||+|.+... ....+..++...++...+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 4679999999987542 13345566666666666666543
No 346
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.57 E-value=0.2 Score=53.10 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-CCceEEecCCCChhhHHHHHHhhhcCCeeE
Q 008443 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
...|....+..+...... +.++|+.++++.-+..+.+.|.+. +..+..+||+++..+|.+...+..+|+.+|
T Consensus 7 GsGKT~v~l~~i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CCCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 345555555554444322 225999999999999999999864 678899999999999999999999999999
Q ss_pred EEeccccccCCCccCccEEEEcC
Q 008443 428 LVATDVASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~ 450 (565)
+|+|...-. ..++++.+||.-+
T Consensus 80 VVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 80 VIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred EECChHHHc-CcccCCCEEEEEC
Confidence 999964322 4567788887544
No 347
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.56 E-value=0.46 Score=49.49 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~ 176 (565)
+-++++||||+|||.+..
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 347899999999998863
No 348
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.56 E-value=0.24 Score=47.08 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=28.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
.|.-++|.|++|+|||... +.++.....+ .+..++|+...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~-~~~~~~~~~~------~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFA-LNIAENIAKK------QGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCceEEEeCC
Confidence 5666899999999999875 4444444432 26678998853
No 349
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.55 E-value=0.37 Score=50.07 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHhc------C----CCEEEEccCCCchHHHHH-HHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 142 TRPTSIQAQAMPVALS------G----RDLLGCAETGSGKTAAFT-IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~------~----~~~lv~a~TGsGKT~~~~-l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
..+-|+|.-++-.|.. + +.++|..|=+-|||..++ +.+...++.. ..+..+.+++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3578999999999872 1 247999999999998765 3333333333 2467799999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC--CCCCCCceEEEecchhhhhhCCCHH
Q 008443 211 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLDMGFEP 288 (565)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~~~~~~~iIiDE~H~~~~~~~~~ 288 (565)
+..++......+.+....- .......|.+.--......+... ...-.+..+.|+||.|.....+ .
T Consensus 135 F~~ar~mv~~~~~l~~~~~-----------~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~ 201 (546)
T COG4626 135 FNPARDMVKRDDDLRDLCN-----------VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--D 201 (546)
T ss_pred hHHHHHHHHhCcchhhhhc-----------cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--H
Confidence 8888877654321111000 00001112222111122222221 2334467899999999876541 3
Q ss_pred HHHHHHHhC--CCCCeEEEEecc
Q 008443 289 QIREVMQNL--PDKHQTLLFSAT 309 (565)
Q Consensus 289 ~~~~i~~~~--~~~~~~l~~SAT 309 (565)
.+..+..-+ .++.+++..|..
T Consensus 202 ~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 202 MYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHhhhccCcCceEEEEecC
Confidence 444444333 345567766654
No 350
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.24 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=17.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.|++||.|+|||.++ ..+...+.
T Consensus 39 ~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh
Confidence 499999999999986 44445444
No 351
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.42 Score=51.54 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=25.3
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|.+.... ...+.+.++.-++...+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 468899999999886432 334555555555555555544
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.48 E-value=0.14 Score=55.50 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=36.5
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
+.-|+|+|..|.+.+......++.++++.+++..+++.|-+-
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 345999999999998888889999999999999888887664
No 353
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.47 E-value=0.11 Score=52.23 Aligned_cols=27 Identities=41% Similarity=0.546 Sum_probs=19.7
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+..+|++||||||||... -.++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 345899999999999874 455565543
No 354
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.46 E-value=0.22 Score=49.91 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccC-------CCCHHHHHHHHH-CCCCCCCHHHHHHH
Q 008443 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDM-------CLHPSIMKDIEF-HEYTRPTSIQAQAM 152 (565)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------~l~~~l~~~l~~-~~~~~~~~~Q~~al 152 (565)
+|.++..-.-.++.++..+..+.+..+.... ..|..-..|..+ +.+++....-.. .....++|..+..+
T Consensus 71 ~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~---r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~l 147 (416)
T PRK09376 71 NYLPGPDDIYVSPSQIRRFNLRTGDTVEGKI---RPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRL 147 (416)
T ss_pred CCCCCCCCeeeCHHHHHhcCCCCCCEEEEEe---eCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccc
Confidence 4455555555678888888888877665321 112211122111 344433322111 12233344444444
Q ss_pred HH-------------Hh---cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 153 PV-------------AL---SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 153 ~~-------------l~---~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
+. +. .|+..+|.||.|+|||... -.+...+.
T Consensus 148 e~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 148 ETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 32 22 6788999999999999764 33444443
No 355
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.32 Score=50.89 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.8
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+|++||.|+|||.++
T Consensus 39 ~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 39 YIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEECCCCCCHHHHH
Confidence 699999999999876
No 356
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.39 E-value=0.75 Score=47.37 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=22.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
++++|++|+|||.+. .-+...+..+ .|.++++|.
T Consensus 102 i~~vG~~GsGKTTta-akLA~~l~~~------~g~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTC-GKLAYYLKKK------QGKKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHH-HHHHHHHHHh------CCCeEEEEe
Confidence 789999999999886 3344443322 255666665
No 357
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.05 Score=53.69 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=28.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCH--HHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTS--IQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~--~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+..-|+|.+.+.+...-+..-+- +| .--+++++.||+|+|||+.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~-------apfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQ-------APFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccccccc-------chhhheeeeCCCCCCchHHH
Confidence 3556668888877664432211000 00 01257999999999999764
No 358
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.2 Score=51.29 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+-+|+.||+|+|||+++
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 45899999999999975
No 359
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.36 E-value=0.24 Score=52.63 Aligned_cols=73 Identities=15% Similarity=0.287 Sum_probs=63.6
Q ss_pred eEEEEEcc----hhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCCCccCccEEEE
Q 008443 376 LTIVFVER----KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 376 ~~lvF~~~----~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.+.+.++| ..|.+.+.+.|...|+.+..+.|.+....|+++++...+|+++++|+|- .+...+++.+..+||.
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 38888898 4566777777888899999999999999999999999999999999995 5678999988888874
No 360
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.36 E-value=0.1 Score=50.77 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+.++++.||+|||||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 447999999999999876
No 361
>PF05729 NACHT: NACHT domain
Probab=94.34 E-value=0.5 Score=41.54 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=18.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~ 186 (565)
-++|.|+.|+|||... -.++..+...
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHhc
Confidence 3789999999999875 4455554443
No 362
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.34 E-value=0.12 Score=52.06 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4456999999999999874 44444443
No 363
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.33 E-value=0.1 Score=50.84 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHhcCC-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 140 EYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 140 ~~~~~~~~Q~~al~~l~~~~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
.+..+++-|...|-.+..++ ++|++|.||||||.. +-++..... ...+++.+=-+.||
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-------~~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-------SDERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-------CcccEEEEeehhhh
Confidence 44578999999998888776 899999999999975 333322221 13478888888777
No 364
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.31 E-value=0.24 Score=54.16 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=62.3
Q ss_pred eEEEEEcchhhHHHHHHHHHH----CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCCCccCccEEEE
Q 008443 376 LTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
++++.++++.-|...++.+.+ .++.+..++|+++..+|..+++.+.+|+.+|+|+|. .+...+++.++.+||.
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 599999999998887776664 378999999999999999999999999999999996 4455677888888874
No 365
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.29 E-value=0.78 Score=40.65 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=40.6
Q ss_pred CCCceEEEecchhhhhhCCCH--HHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 267 LSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
-..+++||+||+=...+.++. ..+..++...++...+|+..-.+|..+...+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 356899999999988877743 45667778888888888888888877766554
No 366
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.12 Score=50.57 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=30.7
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRP-TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~-~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
..+|.+.+=-+.+.+.++..-+..+ +|-.-.--..+...+.+|+.||.|+|||.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 3567777655666666644322111 1111110011113356999999999999876
No 367
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.47 Score=50.55 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
..++++||||+|.+.... ...+.+.++..++...+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 467899999999886432 233444555545556566655
No 368
>PTZ00293 thymidine kinase; Provisional
Probab=94.19 E-value=0.19 Score=45.96 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=26.8
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
|+=.++.||+++|||.-. +..+..... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteL-Lr~i~~y~~-------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL-MRLVKRFTY-------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHH-HHHHHHHHH-------cCCceEEEEec
Confidence 444688999999999653 444444443 36779999885
No 369
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.14 E-value=0.3 Score=45.90 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=31.6
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.|..+++.|++|+|||..+ +.++...+. ++..++|+.- .+...++.+..+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~-~~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFC-LHFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHH-HHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 4567899999999999875 333333333 2556888875 3344555444333
No 370
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.51 Score=50.63 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=13.7
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
.|++||.|+|||.++
T Consensus 41 yLf~Gp~GtGKTt~A 55 (559)
T PRK05563 41 YLFSGPRGTGKTSAA 55 (559)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 371
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.10 E-value=0.22 Score=48.82 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=41.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 133 MKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~al~~l~-~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
++.+.+.|. +++.|.+.|..+. .+++++++|+||||||... -.++..+.... ...+++++=...|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC-----CCceEEEECCchhh
Confidence 344444453 4566666666555 4568999999999999864 44444433211 24567777777776
No 372
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.08 E-value=1.1 Score=43.73 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=71.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC--chhhHHHHHHHHHHHHhcCCCceEEE-EECCCcHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP--TRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNIAE 237 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P--~~~L~~Q~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 237 (565)
+|++|..|+|||... --+..++.. +|.+|++.+- .|+=+.++.+.+-+..+ ..+.. -.|+....-
T Consensus 142 il~vGVNG~GKTTTI-aKLA~~l~~-------~g~~VllaA~DTFRAaAiEQL~~w~er~g----v~vI~~~~G~DpAaV 209 (340)
T COG0552 142 ILFVGVNGVGKTTTI-AKLAKYLKQ-------QGKSVLLAAGDTFRAAAIEQLEVWGERLG----VPVISGKEGADPAAV 209 (340)
T ss_pred EEEEecCCCchHhHH-HHHHHHHHH-------CCCeEEEEecchHHHHHHHHHHHHHHHhC----CeEEccCCCCCcHHH
Confidence 789999999999874 444444444 4777877773 45665555555555442 22222 123322111
Q ss_pred HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCC------eEEEEeccc
Q 008443 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKH------QTLLFSATM 310 (565)
Q Consensus 238 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~------~~l~~SAT~ 310 (565)
.++.+.. ...+++|+|+||=|-|+-+. +.-..+++|.+-..+.. -++.+=||.
T Consensus 210 ------------------afDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 210 ------------------AFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred ------------------HHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 1122221 22346888888888877543 24455666666555433 244458888
Q ss_pred cHHHHHHHHhh
Q 008443 311 PVEIEALAQGY 321 (565)
Q Consensus 311 ~~~~~~~~~~~ 321 (565)
..+--..++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 76654444433
No 373
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.55 Score=50.92 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=18.6
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.+|+.||.|+|||.++ ..+...+..
T Consensus 40 a~Lf~Gp~G~GKttlA-~~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSA-RILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHH-HHHHHHhcC
Confidence 4799999999999886 445555443
No 374
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.45 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=17.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.|+.||.|+|||.++ ..+...+.
T Consensus 41 ~Lf~Gp~G~GKTtlA-~~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTA-RILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhc
Confidence 589999999999886 44444443
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.02 E-value=1.3 Score=43.91 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCceEEEecchhhhhhC-CCHHHHHHHHHhC------CCCCeEEEEeccccHHHHHHHHhh
Q 008443 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNL------PDKHQTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~------~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
.++++||||=+-++... .....+.++.... .+...++.++||...+.-..+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 46899999988765422 1223444444322 233347888888755433334443
No 376
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.99 E-value=0.36 Score=54.76 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=62.9
Q ss_pred eEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCCCccCccEEEE
Q 008443 376 LTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
+++|.++++.-|...++.|.+. ++.+..+++..+..++..+++.+++|+++|+|+|. ++...+.+.++.+||.
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 5999999999999888877653 67888899999999999999999999999999996 5556778888888875
No 377
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.96 E-value=0.87 Score=41.29 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
..|+.||.|+|||..+ ..+...+..
T Consensus 16 ~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 3789999999999875 445555554
No 378
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.93 E-value=0.4 Score=52.31 Aligned_cols=94 Identities=22% Similarity=0.170 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-C-CceEEecCCCChhhHHHHHHhhhcCCeeE
Q 008443 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 350 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
..|....+..+.+....+. .+||.++....+..+.+.|... + ..++.+|++++..+|.+...+..+|+.+|
T Consensus 171 SGKTevyl~~i~~~l~~Gk-------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGR-------GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred CcHHHHHHHHHHHHHHcCC-------eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 4677777777766655433 3999999999999999999865 3 57899999999999999999999999999
Q ss_pred EEeccccccCCCccCccEEEEcCC
Q 008443 428 LVATDVASRGLDVMGVAHVVNLDL 451 (565)
Q Consensus 428 Lv~T~~~~~Gidip~v~~Vi~~~~ 451 (565)
+|+|... .=.-+++..+||..+-
T Consensus 244 ViGtRSA-vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 244 VVGTRSA-VFAPVEDLGLVAIWDD 266 (665)
T ss_pred EEEccee-EEeccCCCCEEEEEcC
Confidence 9999642 2345677788877654
No 379
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.24 Score=53.03 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=17.4
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.+|+.||.|+|||.++ ..+...+.
T Consensus 40 a~Lf~GPpG~GKTtiA-rilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIA-RIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHH-HHHHHhcc
Confidence 3788999999999986 33444433
No 380
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.83 E-value=0.61 Score=44.00 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||..+ ..++..... ++.+++|+.=... ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~-~~~~~~~~~-------~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLS-QQFVYGALK-------QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHH-HHHHHHHHh-------CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 455899999999999876 333333332 3677888886533 34555555554
No 381
>PRK06904 replicative DNA helicase; Validated
Probab=93.81 E-value=0.78 Score=48.10 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=59.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEEC-CCcH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVG-GTNI 235 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g-~~~~ 235 (565)
.|.=++|.|.+|.|||..+ +-+...+... .+..++|.... -=..|+..++-......+ .. .+..| ....
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~-~~-~i~~g~~l~~ 289 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLSRVD-QT-KIRTGQNLDQ 289 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhCCCC-HH-HhccCCCCCH
Confidence 3444788999999999865 5555444322 25568887654 445555555544433221 11 11123 2333
Q ss_pred HHHHH------HHhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 236 AEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 236 ~~~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.++.. .+....++.|- |+..+.....+.......+++||||=.+.+.
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 33322 22223445552 3444433332211111258899999888765
No 382
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.80 E-value=0.38 Score=50.52 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 356999999999999864
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.78 E-value=2.1 Score=38.10 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=21.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+++.|++|+|||... ..+...+.. .+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~-~~la~~~~~-------~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTA-AKLALYLKK-------KGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEE
Confidence 578999999999886 434444333 255565554
No 384
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.75 E-value=0.65 Score=52.74 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
++.+++||+|+|||.+.
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 46999999999999875
No 385
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.71 E-value=0.57 Score=49.29 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=76.5
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH----HHHHhcCCCceEEEEECCCcH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV----KALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~----~~~~~~~~~~~~~~~~g~~~~ 235 (565)
-.+..-|=--|||+. +.|++..++..- .|-++.|++|.+.-+.-+.+++ ++|++.. .+...-+
T Consensus 204 aTVFLVPRRHGKTWf-~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~---~vi~~k~---- 270 (668)
T PHA03372 204 ATVFLVPRRHGKTWF-IIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK---HTIENKD---- 270 (668)
T ss_pred ceEEEecccCCceeh-HHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc---ceeeecC----
Confidence 356677888999996 488888888732 4788999999887766655554 4444321 1111111
Q ss_pred HHHHHHHhCCCeEEEECchH-----HHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC-CCCCeEEEEecc
Q 008443 236 AEQRSELRGGVSIVVATPGR-----FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 309 (565)
Q Consensus 236 ~~~~~~~~~~~~Ilv~T~~~-----l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT 309 (565)
..|.|.-|+. +......+...-+++++++|||||-+. ...+..|+..+ ..++++|..|.|
T Consensus 271 ----------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 ----------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ----------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 1233332221 111122334556789999999999764 44556666655 356778888877
Q ss_pred c
Q 008443 310 M 310 (565)
Q Consensus 310 ~ 310 (565)
-
T Consensus 337 N 337 (668)
T PHA03372 337 N 337 (668)
T ss_pred C
Confidence 4
No 386
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.71 E-value=0.22 Score=51.82 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCHHHH-HHHHHCCCCCCCH----HHHHHHHHHhc--CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 127 CLHPSIM-KDIEFHEYTRPTS----IQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 127 ~l~~~l~-~~l~~~~~~~~~~----~Q~~al~~l~~--~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
+...+++ ..|.+.--.+++. +|.+==+.+.. ++-++|.|+.|||||.+++-.+...+......- .++.||+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l--~~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL--QAKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--ccCceEE
Confidence 4444444 4566554444433 23333333333 334889999999999998666554444433221 2344999
Q ss_pred EcCchhhHHHHHHHHHHH
Q 008443 200 LAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~ 217 (565)
+.|.+-++.-+.+.+-.+
T Consensus 266 l~PN~vFleYis~VLPeL 283 (747)
T COG3973 266 LGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EcCcHHHHHHHHHhchhh
Confidence 999998877665555544
No 387
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.71 E-value=0.32 Score=45.81 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=64.0
Q ss_pred CCceEEecCCCChhhHHHHHHhhhcCC----eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcc--cccCCCc
Q 008443 398 GLHAVALHGGRNQSDRESALRDFRNGS----TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGR--TGRGGSM 471 (565)
Q Consensus 398 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GR--agR~g~~ 471 (565)
++.+..++++.+.+. -.+.++. ..|+|+=+.++||+.+++..+..+.+.+....+ +++.|| +-|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DT-L~QmgRwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDT-LMQMGRWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHH-HHHHhhcccCCcccc
Confidence 577777776554433 2334433 789999999999999999999999999885544 555677 5688777
Q ss_pred eeEEEEeccccHHHHHHHH
Q 008443 472 GQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 472 g~~~~~~~~~d~~~~~~l~ 490 (565)
+.|-++.++.-...+..+.
T Consensus 184 dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred cceEEecCHHHHHHHHHHH
Confidence 8888888877666666654
No 388
>PRK06620 hypothetical protein; Validated
Probab=93.69 E-value=0.16 Score=47.20 Aligned_cols=17 Identities=35% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.++++||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44899999999999864
No 389
>PRK05973 replicative DNA helicase; Provisional
Probab=93.64 E-value=0.27 Score=46.16 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 151 AMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 151 al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..--+..|.-++|.|++|+|||... +.++..... +|.+++|+.-... ..|+.+++..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~la-lqfa~~~a~-------~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLG-LELAVEAMK-------SGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 3334446667899999999999876 444444333 3667888876433 56666766655
No 390
>PHA00350 putative assembly protein
Probab=93.64 E-value=0.76 Score=46.54 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=27.1
Q ss_pred ceEEEecchhhhhhCC-----------------------CHHHHHHHHHhCCCCCeEEEEecccc
Q 008443 270 VSFVILDEADRMLDMG-----------------------FEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~-----------------------~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
=.+|||||||.+.... -...+..+..+-..+.-++++|-.+.
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~ 146 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR 146 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH
Confidence 3689999999876322 12334444445555667888887774
No 391
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.85 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=18.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.|+.||.|+|||.++ ..+...+..
T Consensus 41 ~lf~Gp~G~GKtt~A-~~~a~~l~c 64 (397)
T PRK14955 41 YIFSGLRGVGKTTAA-RVFAKAVNC 64 (397)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhcC
Confidence 789999999999987 444444443
No 392
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.36 Score=52.65 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=80.7
Q ss_pred EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-CCceEEecCCCChhhHHHHHHhh
Q 008443 342 QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDF 420 (565)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f 420 (565)
.+...++...|.+..+..+.+....+.+ +||.++.+.....+.+.|... |.++..+|+++++.+|.....+.
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~Gkq-------vLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~ 292 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGKQ-------VLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRA 292 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCCE-------EEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHH
Confidence 3456667788888888888888766644 999999999988888888765 88999999999999999999999
Q ss_pred hcCCeeEEEeccccccCCCccCccEEEE
Q 008443 421 RNGSTNILVATDVASRGLDVMGVAHVVN 448 (565)
Q Consensus 421 ~~g~~~vLv~T~~~~~Gidip~v~~Vi~ 448 (565)
.+|+.+|+|+|..+ -=.-+++..+||.
T Consensus 293 ~~G~~~vVIGtRSA-lF~Pf~~LGLIIv 319 (730)
T COG1198 293 RRGEARVVIGTRSA-LFLPFKNLGLIIV 319 (730)
T ss_pred hcCCceEEEEechh-hcCchhhccEEEE
Confidence 99999999999642 2234566777764
No 393
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.32 Score=48.04 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|++||.|||||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 45999999999999875
No 394
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.36 E-value=0.44 Score=45.82 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.=+++.|.||.|||..+ +.+...+... .+..|+|+...-. ..++..++-......+ ... +..|.....+
T Consensus 19 g~L~vi~a~pg~GKT~~~-l~ia~~~a~~------~~~~vly~SlEm~-~~~l~~R~la~~s~v~-~~~-i~~g~l~~~e 88 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFA-LQIALNAALN------GGYPVLYFSLEMS-EEELAARLLARLSGVP-YNK-IRSGDLSDEE 88 (259)
T ss_dssp T-EEEEEESTTSSHHHHH-HHHHHHHHHT------TSSEEEEEESSS--HHHHHHHHHHHHHTST-HHH-HHCCGCHHHH
T ss_pred CcEEEEEecccCCchHHH-HHHHHHHHHh------cCCeEEEEcCCCC-HHHHHHHHHHHhhcch-hhh-hhccccCHHH
Confidence 344889999999999876 5555555442 2467999987422 2223333333322211 100 0112222222
Q ss_pred HHH------HHhCCCeEEE-ECc----hHHHHHHHcCCCCCCCceEEEecchhhhhhC----CCHHHHHHHHHhCC----
Q 008443 238 QRS------ELRGGVSIVV-ATP----GRFLDHLQQGNTSLSRVSFVILDEADRMLDM----GFEPQIREVMQNLP---- 298 (565)
Q Consensus 238 ~~~------~~~~~~~Ilv-~T~----~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~----~~~~~~~~i~~~~~---- 298 (565)
+.. .+. ...+.| .++ +.+...+..-......+++||||=.|.+... +....+..+...++
T Consensus 89 ~~~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 221 122 234444 333 3443333321112257899999999987653 23333444333221
Q ss_pred -CCCeEEEEecc
Q 008443 299 -DKHQTLLFSAT 309 (565)
Q Consensus 299 -~~~~~l~~SAT 309 (565)
-++.++++|..
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 14556665544
No 395
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.36 E-value=0.58 Score=48.55 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=55.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEE-EEECCCcH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA-IVVGGTNI 235 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~-~~~g~~~~ 235 (565)
.|.-++|.|.+|+|||..+ +.+...+... .+..++|+.-. .-..|+..++-..... +... ...|....
T Consensus 193 ~g~liviag~pg~GKT~~a-l~ia~~~a~~------~g~~v~~fSlE-m~~~~l~~Rl~~~~~~---v~~~~~~~~~l~~ 261 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLA-LNIAENVALR------EGKPVLFFSLE-MSAEQLGERLLASKSG---INTGNIRTGRFND 261 (421)
T ss_pred CCceEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCcEEEEECC-CCHHHHHHHHHHHHcC---CCHHHHhcCCCCH
Confidence 4455899999999999876 4444333211 25668888743 3344444443332221 1111 11233332
Q ss_pred HHHHH------HHhCCCeEEEEC-----chHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 236 AEQRS------ELRGGVSIVVAT-----PGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 236 ~~~~~------~~~~~~~Ilv~T-----~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.++.. .+ .+.++.|.- ++.+.....+-......+++||||=.|.+.
T Consensus 262 ~~~~~~~~~~~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 262 SDFNRLLNAVDRL-SEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 22221 12 224455533 233333222111111258899999888765
No 396
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.34 E-value=0.75 Score=52.06 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
++++++||+|+|||.++
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999875
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.32 E-value=1 Score=46.17 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~ 176 (565)
|+.+.++|+||+|||....
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4458899999999998753
No 398
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.23 E-value=0.51 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=18.0
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
..|+.||.|+|||.++ ..+...+.
T Consensus 40 A~Lf~GP~GvGKTTlA-~~lAk~L~ 63 (605)
T PRK05896 40 AYIFSGPRGIGKTSIA-KIFAKAIN 63 (605)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhc
Confidence 3789999999999886 44444444
No 399
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.22 E-value=0.47 Score=46.17 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.++++||||+|||.+.
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999876
No 400
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.17 E-value=0.24 Score=49.68 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=26.4
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
+..++++||||+|||... ..++..+... .+.+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC------CCCEEEEEcCChhh
Confidence 456899999999999874 3444443221 24456666554554
No 401
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.15 E-value=0.95 Score=51.32 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.+.+++||+|+|||.+.
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 36999999999999875
No 402
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.08 E-value=1.2 Score=48.19 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+-+++.||+|+|||.++
T Consensus 111 ~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 111 RILLITGPSGCGKSTTI 127 (637)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34899999999999864
No 403
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.06 E-value=0.13 Score=36.81 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
|...++.|++|+|||.+ +.++..++-
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHHc
Confidence 44689999999999986 777776654
No 404
>PRK10436 hypothetical protein; Provisional
Probab=93.06 E-value=0.33 Score=50.52 Aligned_cols=39 Identities=31% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHH
Q 008443 144 PTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+.+.|.+.+..+... .-+|++||||||||... ..++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 345566666655533 34899999999999874 4455554
No 405
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.05 E-value=0.21 Score=47.34 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..++|.|++|+|||..+ +.++...+. +|.+++|++- .+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la-~~~l~~~~~-------~ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFS-QQFLWNGLQ-------MGEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEEe-eCCHHHHHHHHHHh
Confidence 3556999999999999876 333333333 3677999884 45666666666554
No 406
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.05 E-value=1.8 Score=42.84 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...+++|||++|.|... -...+.++++.-+ +..+|+.+..+
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECCh
Confidence 46899999999988533 2344555666555 56566666554
No 407
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.92 E-value=2.4 Score=39.85 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=16.0
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
++++|+|||||+... ..++.+
T Consensus 130 viiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 130 VIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred EEEECCCCCCchhhH-HHHhcc
Confidence 789999999999874 444443
No 408
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.86 E-value=1.9 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=17.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.|++||.|+|||.++ ..+...+..
T Consensus 41 ~Lf~Gp~GvGKttlA-~~lAk~L~c 64 (620)
T PRK14954 41 YIFSGLRGVGKTTAA-RVFAKAVNC 64 (620)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhCC
Confidence 789999999999987 444444443
No 409
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.76 E-value=1.5 Score=47.89 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+.... ...+.+.+..-++...+|+.+
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 468899999999886432 223344444444444344444
No 410
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.75 E-value=0.25 Score=46.37 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchHHH
Q 008443 159 RDLLGCAETGSGKTAA 174 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~ 174 (565)
..++|.||-|+|||..
T Consensus 21 ~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSL 36 (234)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred cEEEEEcCCcCCHHHH
Confidence 5689999999999975
No 411
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=92.73 E-value=0.0074 Score=52.78 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=27.3
Q ss_pred CCCCCCCccccCCCCccccccCCCCCCCCCC
Q 008443 28 SSSSSSSVVTLDSDLTTKLSFSSKSLPNFSN 58 (565)
Q Consensus 28 ssssn~s~~a~~~~~e~~~~~~~~~~~~~~~ 58 (565)
..|||+|.+||+.|.|||+++++..++...+
T Consensus 137 iGSsNlt~sALt~n~Ewn~k~s~~~~g~i~~ 167 (198)
T COG3886 137 IGSSNLTDSALTVNEEWNLKVSSSKNGDIVK 167 (198)
T ss_pred EccchhhhhhcccCHHHHhhhccccccchHH
Confidence 4689999999999999999999999995443
No 412
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.68 E-value=0.063 Score=62.58 Aligned_cols=93 Identities=27% Similarity=0.371 Sum_probs=75.7
Q ss_pred EEEEEcchhhHHHHHHHHHHCCC-ceEEecCCCC-----------hhhHHHHHHhhhcCCeeEEEeccccccCCCccCcc
Q 008443 377 TIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN-----------QSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (565)
Q Consensus 377 ~lvF~~~~~~a~~l~~~l~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~ 444 (565)
.++||..+..+..+.+.+.+... .+..+.|.+. .-.+.+++..|...++++|++|.++.+|+|+|.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 89999998888888777776522 2223444332 22367899999999999999999999999999999
Q ss_pred EEEEcCCCCCccchhhhhcccccCC
Q 008443 445 HVVNLDLPKTVEDYVHRIGRTGRGG 469 (565)
Q Consensus 445 ~Vi~~~~~~s~~~~~Q~~GRagR~g 469 (565)
.|+.++.|.....|+|..||+-+.+
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997643
No 413
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.65 E-value=1.5 Score=46.45 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
...++++||||+|.+.... ...+.+.+...++...+|+.+.
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEEC
Confidence 3568999999999886432 3345566666666666666553
No 414
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.62 E-value=0.56 Score=47.97 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||.++
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 46999999999999875
No 415
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.62 E-value=0.36 Score=45.71 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.9
Q ss_pred CEEEEccCCCchHHHHH
Q 008443 160 DLLGCAETGSGKTAAFT 176 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~ 176 (565)
++|+.||.|.|||..+.
T Consensus 54 HvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 54 HVLLFGPPGLGKTTLAH 70 (332)
T ss_pred eEEeeCCCCCcHHHHHH
Confidence 58999999999998763
No 416
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.62 E-value=0.52 Score=53.30 Aligned_cols=91 Identities=12% Similarity=0.195 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHH----HHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCee
Q 008443 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE----VSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 351 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~----l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
.|.+..+...-.....+ +.+.|.++|.--|+. +.+.|...++++..+..-.+..+..++++.+++|+++
T Consensus 627 GKTEVAmRAAFkAV~~G-------KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vD 699 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDG-------KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVD 699 (1139)
T ss_pred cHHHHHHHHHHHHhcCC-------CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCcc
Confidence 45555555544444333 359999999655544 5555555678888999999999999999999999999
Q ss_pred EEEec-cccccCCCccCccEEEE
Q 008443 427 ILVAT-DVASRGLDVMGVAHVVN 448 (565)
Q Consensus 427 vLv~T-~~~~~Gidip~v~~Vi~ 448 (565)
|+|+| .+++.+|-+.++.++|.
T Consensus 700 IvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 700 IVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred EEEechHhhCCCcEEecCCeEEE
Confidence 99999 68899999999999874
No 417
>PRK13764 ATPase; Provisional
Probab=92.57 E-value=0.29 Score=52.35 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=20.0
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.++++|++|+||||||... ..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3567999999999999864 44555543
No 418
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.49 E-value=0.37 Score=43.64 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHh-cCCCEEEEccCCCchHHHH
Q 008443 143 RPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 143 ~~~~~Q~~al~~l~-~~~~~lv~a~TGsGKT~~~ 175 (565)
.+++.|.+.+.... .+..++++|+||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34566777776655 5677999999999999863
No 419
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.49 E-value=0.18 Score=53.25 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.+|+.+|.+.+..+. +|+-.|+-.|||||||+..+-..+.++.
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 378999988887665 6888899999999999876555555543
No 420
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.45 E-value=0.3 Score=47.00 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHhc-C-CCEEEEccCCCchHHHHHHHHHHHH
Q 008443 145 TSIQAQAMPVALS-G-RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~al~~l~~-~-~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.+.|.+.+..+.. . ..+++.|+||+|||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4556666665543 2 34899999999999864 4444543
No 421
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.43 E-value=1.9 Score=43.66 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=62.9
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHH---HHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK---EVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
|+.++-|+|||.+.++.++..++..+ .+..++++.....+...+.. .+..+.................
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI---- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE----
Confidence 57899999999998887887777642 12455555444444444333 2233322211111110111100
Q ss_pred HHHHhCCCeEEEECchHH--HHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc--cHHH
Q 008443 239 RSELRGGVSIVVATPGRF--LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM--PVEI 314 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l--~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~--~~~~ 314 (565)
.+.++..|.+.+.+.- ..-+. -..+++|++||+-.+.+..+...+........... .+..|.|+ ....
T Consensus 72 --~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 72 --ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWF 143 (384)
T ss_dssp --EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred --EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCce
Confidence 0134455767664321 11111 14688999999887654433333333433333222 22444443 3444
Q ss_pred HHHHHhhcCCC
Q 008443 315 EALAQGYLTDP 325 (565)
Q Consensus 315 ~~~~~~~~~~~ 325 (565)
..+........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55555554443
No 422
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.43 E-value=0.92 Score=50.74 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++.+|+.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3467999999999999764
No 423
>PRK08840 replicative DNA helicase; Provisional
Probab=92.27 E-value=1.6 Score=45.59 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=57.7
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
.|.=++|.|.+|.|||..+ +-+...+... .+..++|.... -=..|+..++-........ .....|.....
T Consensus 216 ~g~LiviaarPg~GKTafa-lnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~--~~i~~~~l~~~ 285 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA-MNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASLSRVDQ--TKIRTGQLDDE 285 (464)
T ss_pred CCceEEEEeCCCCchHHHH-HHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhhCCCCH--HHHhcCCCCHH
Confidence 4445889999999999865 4444443321 25568887754 3345555554433222111 01112333344
Q ss_pred HHHHH------HhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 237 EQRSE------LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 237 ~~~~~------~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+|... +.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 44321 2123345553 2233332222111111248899999988774
No 424
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.26 E-value=1.6 Score=44.18 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=17.5
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
..|+.||.|+|||..+ ..+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhc
Confidence 3689999999999875 44444443
No 425
>PRK08506 replicative DNA helicase; Provisional
Probab=92.24 E-value=1.4 Score=46.22 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=58.4
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|.||.|||..+ +-++..+.. .+..++|+... .=..|+..++-......+ .. .+..|.....+
T Consensus 192 G~LivIaarpg~GKT~fa-l~ia~~~~~-------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~-~~-~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLC-LNMALKALN-------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIP-LQ-NLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHHH-HHHHHHHHh-------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCC-HH-HHhcCCCCHHH
Confidence 344889999999999876 555555443 25668887654 445555555544332211 11 11123333333
Q ss_pred HHH------HHhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 238 QRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 238 ~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+.. .+. +..+.|- |+..+...+.+-......+++||||=.+.+.
T Consensus 261 ~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 321 122 2345443 3334433332211112358899999998765
No 426
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.24 E-value=0.65 Score=51.92 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||+++
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999875
No 427
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.24 E-value=0.29 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.3
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.++-+|++||+|+|||.+ +.++...+
T Consensus 109 ~~~iLLltGPsGcGKSTt--vkvLskel 134 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTT--VKVLSKEL 134 (634)
T ss_pred CceEEEEeCCCCCCchhH--HHHHHHhh
Confidence 445689999999999987 55555433
No 428
>PRK08006 replicative DNA helicase; Provisional
Probab=92.22 E-value=2.6 Score=44.21 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.=++|.|.+|.|||..+ +-+...+... .+..|+|.... -=..|+..++-....... .. .+..|.....+
T Consensus 224 G~LiiIaarPgmGKTafa-lnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~-~~-~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFA-MNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASLSRVD-QT-RIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHhcCCC-HH-HhhcCCCCHHH
Confidence 344788999999999765 4444443321 25568887754 334455555443332211 11 11123334444
Q ss_pred HHH------HHhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 238 QRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 238 ~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
|.. .+.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 432 12133445553 3333333332211111258899999999764
No 429
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.18 E-value=0.19 Score=47.35 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.6
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
++|.|+.|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999853
No 430
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.17 E-value=1.8 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHHHHh----cC--CCEEEEccCCCchHHHH
Q 008443 148 QAQAMPVAL----SG--RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 148 Q~~al~~l~----~~--~~~lv~a~TGsGKT~~~ 175 (565)
|..-+..+. .+ .+.|++||.|+|||.+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555544 22 46999999999999875
No 431
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.11 E-value=0.94 Score=52.76 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=61.8
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCCCccCccEEEE
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~ 448 (565)
.+++|.++++.-|..+++.|.+. ++.+..+++..+..++..+++.+.+|.++|+|+|. ++...+++.++.+||.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 36999999999999888887753 56778899999999999999999999999999995 5555677777887764
No 432
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.10 E-value=1.1 Score=43.89 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHh-CCCCCeEEEEeccccHHHH
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~ 315 (565)
.+.++++|||+|- .|-+-.-.+.+++.. +..++.++..|-|+|.++.
T Consensus 129 ~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 129 AETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNLY 176 (367)
T ss_pred hcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhc
Confidence 3577999999992 222212223344333 3457778889999987763
No 433
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.092 Score=50.26 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
-|+|++||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 36999999999999875
No 434
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=91.98 E-value=4 Score=36.33 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=40.7
Q ss_pred CCCceEEEecchhhhhhCCCH--HHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 267 LSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
-..+++||+||+-...+.++. ..+..+++..++..-+|+..-.++.++...+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 356899999999988887754 45667788888887888888888877665543
No 435
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.95 E-value=0.49 Score=49.75 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHhcCCC--EEEEccCCCchHHHHHHHHHHHH
Q 008443 144 PTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 144 ~~~~Q~~al~~l~~~~~--~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+.+.|.+.+..+..... ++++||||||||... ..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 35667777776665433 789999999999874 3344443
No 436
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.81 E-value=0.26 Score=49.20 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=28.1
Q ss_pred hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
..+.+++++|+||||||... -.++..+- ...+++.+=.+.||
T Consensus 160 ~~~~nilI~G~tGSGKTTll-~aLl~~i~--------~~~rivtiEd~~El 201 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMS-KTLISAIP--------PQERLITIEDTLEL 201 (344)
T ss_pred HcCCeEEEECCCCccHHHHH-HHHHcccC--------CCCCEEEECCCccc
Confidence 36678999999999999863 33333221 24457777777766
No 437
>PRK07004 replicative DNA helicase; Provisional
Probab=91.81 E-value=1.4 Score=46.18 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=56.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEE-EEECCCcH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA-IVVGGTNI 235 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~-~~~g~~~~ 235 (565)
.|.-++|.|.+|+|||..+ +.+....... .+..++|.... .=..|+..++-..... +... ...|....
T Consensus 212 ~g~liviaarpg~GKT~~a-l~ia~~~a~~------~~~~v~~fSlE-M~~~ql~~R~la~~~~---v~~~~i~~g~l~~ 280 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFS-MNIGEYVAVE------YGLPVAVFSME-MPGTQLAMRMLGSVGR---LDQHRMRTGRLTD 280 (460)
T ss_pred CCceEEEEeCCCCCccHHH-HHHHHHHHHH------cCCeEEEEeCC-CCHHHHHHHHHHhhcC---CCHHHHhcCCCCH
Confidence 3445889999999999865 4444443221 25567777643 3334444444322211 1111 11233344
Q ss_pred HHHHH------HHhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 236 AEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 236 ~~~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.++.. .+ .+..+.|. |+..+.....+-......+++||||=.+.+.
T Consensus 281 ~e~~~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 281 EDWPKLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 44322 22 23456553 3333333222211112247899999998775
No 438
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.74 E-value=0.51 Score=50.76 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHH
Q 008443 145 TSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.+.|.+.+..+... .-+|++||||||||... ..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 55666677666543 34789999999999874 4455544
No 439
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=91.72 E-value=0.23 Score=50.80 Aligned_cols=44 Identities=32% Similarity=0.497 Sum_probs=31.7
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
..+++++.|.||+|||.+. ..++..+..+ +.+++|.=|.-+...
T Consensus 14 e~~~~li~G~~GsGKT~~i-~~ll~~~~~~-------g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQAI-RHLLDQIRAR-------GDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGG-EEEEE-TTSSHHHHH-HHHHHHHHHT-------T-EEEEEEETTHHHH
T ss_pred hhCcEEEECCCCCCHHHHH-HHHHHHHHHc-------CCEEEEEECCchHHH
Confidence 5678999999999999854 7777777764 667888878766644
No 440
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.60 E-value=0.84 Score=45.05 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.++++.||.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999765
No 441
>PRK05748 replicative DNA helicase; Provisional
Probab=91.60 E-value=2.3 Score=44.55 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=57.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|.||+|||..+ +.++.....+ .|..++|+... .-..|+..++-......+ .. ....|.....+
T Consensus 203 G~livIaarpg~GKT~~a-l~ia~~~a~~------~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~-~~-~i~~~~l~~~e 272 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFA-LNIAQNVATK------TDKNVAIFSLE-MGAESLVMRMLCAEGNID-AQ-RLRTGQLTDDD 272 (448)
T ss_pred CceEEEEeCCCCCchHHH-HHHHHHHHHh------CCCeEEEEeCC-CCHHHHHHHHHHHhcCCC-HH-HhhcCCCCHHH
Confidence 345899999999999876 5555444321 25567777653 444555555543322211 11 01123333333
Q ss_pred HHHH-----HhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 238 QRSE-----LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 238 ~~~~-----~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
+... ...+..+.|. |++.+...+.+-.....++++||||=.|.+.
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 3211 1122345543 3334433322211111258899999999774
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.58 E-value=1 Score=47.53 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHhcC-----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 150 QAMPVALSG-----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 150 ~al~~l~~~-----~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..++.++.| .-+||.|++|+|||... +.++....+ +|.+++|+.- .|-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~-~~f~~~~~~-------~ge~~~y~s~-eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLV-SKFLENACA-------NKERAILFAY-EESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEEe-eCCHHHHHHHHHHc
Confidence 355665544 45899999999999876 444444443 3677999884 56667777777665
No 443
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.55 E-value=0.11 Score=46.56 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHhCCCeEEEECchHHHHHHHcCCCC--CCCceEEEecchhhhhh
Q 008443 241 ELRGGVSIVVATPGRFLDHLQQGNTS--LSRVSFVILDEADRMLD 283 (565)
Q Consensus 241 ~~~~~~~Ilv~T~~~l~~~~~~~~~~--~~~~~~iIiDE~H~~~~ 283 (565)
.....++|||+++.-|++......+. ..+-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34456999999999987664433221 22346899999998754
No 444
>PRK08760 replicative DNA helicase; Provisional
Probab=91.54 E-value=1.7 Score=45.71 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=58.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|.+|.|||..+ +-+...+..+ .+..|+|.... .=..|+..++.......+... +..|.....+
T Consensus 229 G~LivIaarPg~GKTafa-l~iA~~~a~~------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~--i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTTFA-LNIAEYAAIK------SKKGVAVFSME-MSASQLAMRLISSNGRINAQR--LRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhHHH-HHHHHHHHHh------cCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH--HhcCCCCHHH
Confidence 344789999999999876 5455444321 25567777664 334556665554432221111 1123333333
Q ss_pred HHH------HHhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 238 QRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 238 ~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
|.. .+ ....+.|- |++.+.....+-. .-..+++||||=.+.+.
T Consensus 299 ~~~~~~a~~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKML-KETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 321 12 22445554 3344433332211 11347899999998764
No 445
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.49 E-value=0.4 Score=53.08 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=48.6
Q ss_pred eEEEEEcchhhHHHHHHHHHHC----C-CceEE-ecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 376 LTIVFVERKTRCDEVSEALVAE----G-LHAVA-LHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
++++.++|..-+.+.++.|... + ..+.. +|+.++..++++++++|.+|+.+|||+|..+
T Consensus 127 r~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 127 RVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred eEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 5888899988888887777654 2 33222 9999999999999999999999999999654
No 446
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.47 E-value=1.7 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.103 Sum_probs=17.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.|+.||.|+|||.++ ..+...+..
T Consensus 42 ~Lf~Gp~G~GKtt~A-~~lAk~l~c 65 (451)
T PRK06305 42 YLFSGIRGTGKTTLA-RIFAKALNC 65 (451)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHhcC
Confidence 789999999999886 444454443
No 447
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.39 E-value=0.31 Score=45.70 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=31.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..++|.|++|+|||..++--+...+.+ .|.+++|++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 34568999999999998763333333332 1556888884 34445555555543
No 448
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.37 E-value=1.4 Score=46.48 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.7
Q ss_pred EEEEccCCCchHHHHH
Q 008443 161 LLGCAETGSGKTAAFT 176 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~ 176 (565)
.|+.||.|+|||.++.
T Consensus 41 yLf~Gp~G~GKTtlAr 56 (486)
T PRK14953 41 YIFAGPRGTGKTTIAR 56 (486)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998763
No 449
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.30 E-value=0.32 Score=54.87 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=78.7
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCee-EEEeccccccCCCccCccEEEEcCCCC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN-ILVATDVASRGLDVMGVAHVVNLDLPK 453 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vLv~T~~~~~Gidip~v~~Vi~~~~~~ 453 (565)
.++|+|..--...+.+...|.-.++......++ ++-...+..|++ ++ .|+-+...+.|+|+-++.+|++.+|-.
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 469999988888888888887777766554432 344566777776 44 566778899999999999999999999
Q ss_pred CccchhhhhcccccCCCceeEEEEe
Q 008443 454 TVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 454 s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
++.+-.|.+||..|.|+...+.+..
T Consensus 1297 N~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred CchHHHhhhhhhhhcccccchhhhh
Confidence 9999999999999999876655443
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.22 E-value=1 Score=47.04 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-+++.|++|+|||... +.++..+.. ++.+++|+... +-..|+..+..++
T Consensus 94 GsvilI~G~pGsGKTTL~-lq~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLL-LQVACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 445899999999999876 444444433 25579999875 4456666555543
No 451
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.21 E-value=1.3 Score=50.98 Aligned_cols=41 Identities=10% Similarity=0.318 Sum_probs=32.3
Q ss_pred ceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 270 VSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
--+||||++|.+.+......+..++...+++..+|+.|-+.
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 35899999998865555667888888888888888888764
No 452
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.19 E-value=1.9 Score=44.99 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
|.-++|.|++|+|||... +.++..+... .|..++|+... .=..|+..++...
T Consensus 195 G~l~vi~g~pg~GKT~~~-l~~a~~~a~~------~g~~vl~~SlE-m~~~~i~~R~~~~ 246 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFA-LNIAENAAIK------EGKPVAFFSLE-MSAEQLAMRMLSS 246 (434)
T ss_pred CeEEEEEeCCCCChHHHH-HHHHHHHHHh------CCCeEEEEeCc-CCHHHHHHHHHHH
Confidence 344799999999999765 5455443321 25568888754 3344455554443
No 453
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.11 E-value=4.6 Score=40.27 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=26.1
Q ss_pred CCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
....+++||||+|.+... -...+.+.++.-++...+|+.|..
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeCC
Confidence 346789999999988643 233455555555555655554443
No 454
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.10 E-value=0.69 Score=46.03 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=27.2
Q ss_pred hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
..+.+++++|+||||||... -.++..+- ...+++.+=-+.||
T Consensus 158 ~~~~nili~G~tgSGKTTll-~aL~~~ip--------~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT-NAALREIP--------AIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH-HHHHhhCC--------CCCeEEEecCCCcc
Confidence 35678999999999999763 33333321 24556666555555
No 455
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.00 E-value=7 Score=35.71 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=28.0
Q ss_pred CCCceEEEecchhhhhhCCCHHHHHHHH---HhCCCCCeEEEEecccc
Q 008443 267 LSRVSFVILDEADRMLDMGFEPQIREVM---QNLPDKHQTLLFSATMP 311 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~---~~~~~~~~~l~~SAT~~ 311 (565)
..+-++||||-...+.-.+-...+..++ +.+-...+++++|+-|.
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 4456789999998776443233333333 23334556999999885
No 456
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=90.96 E-value=0.44 Score=52.54 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=58.3
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
+++....++-|-+++..-.+-....++||+|+|||-++ ..++.-+.... ..++.+|+++...-..|..+.+.++
T Consensus 733 ~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~a-vqil~~lyhn~-----p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 733 KKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVA-VQILSVLYHNS-----PNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred ccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchh-hhhhhhhhhcC-----CCcceEEEEecccchhHHHHHHHhc
Confidence 34555778999999987777778999999999999887 66776666554 3677999999988888887766654
No 457
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.85 E-value=0.99 Score=47.94 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||..+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999874
No 458
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.85 E-value=0.48 Score=45.61 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 150 QAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 150 ~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
.++..+..++++++.|++|+|||.++
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 34555667889999999999999886
No 459
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.82 E-value=0.37 Score=44.14 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=24.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
++++||||+|||... ..++..+... .+.+++++-...++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc------CCcEEEEEcCCccc
Confidence 689999999999874 3344444321 24456666554443
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.81 E-value=1.3 Score=44.71 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+.++|+|++|+|||.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 6788999999999999864
No 461
>PRK09087 hypothetical protein; Validated
Probab=90.79 E-value=0.67 Score=43.44 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=24.0
Q ss_pred EEEecchhhhhhCCCHHHHHHHHHhCCC-CCeEEEEeccccHHH
Q 008443 272 FVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEI 314 (565)
Q Consensus 272 ~iIiDE~H~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~ 314 (565)
+|+||++|.+.. -...+..+++.+.. +.++|+.|.+++...
T Consensus 90 ~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHHh
Confidence 789999997632 23445555555443 455565565555543
No 462
>PRK05595 replicative DNA helicase; Provisional
Probab=90.63 E-value=2.5 Score=44.18 Aligned_cols=121 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred HHHHHhc----CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE
Q 008443 151 AMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 151 al~~l~~----~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
.++.+.. |.-++|.|.||.|||..+ +.+...+... .|.+|+|+... .-..|+..++-......+ ...
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~a-l~ia~~~a~~------~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~-~~~ 260 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTFA-LNIAEYAALR------EGKSVAIFSLE-MSKEQLAYKLLCSEANVD-MLR 260 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHHH-HHHHHHHHHH------cCCcEEEEecC-CCHHHHHHHHHHHhcCCC-HHH
Confidence 4444443 334788999999999876 4454433211 36678888764 334445554443332221 111
Q ss_pred EEEECCCcHHHHHHHHh-----CCCeEEEE-C----chHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 227 AIVVGGTNIAEQRSELR-----GGVSIVVA-T----PGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~-----~~~~Ilv~-T----~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
...|.....++..... ....+.|- + ++.+...+.+-.. -..+++||||=.|.+.
T Consensus 261 -~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~ 324 (444)
T PRK05595 261 -LRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMS 324 (444)
T ss_pred -HhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhcc
Confidence 1123333333321111 12344443 2 2333222222111 1348899999999775
No 463
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.51 E-value=1.8 Score=37.33 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.6
Q ss_pred EEEEccCCCchHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPM 179 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~ 179 (565)
.++.||.|+|||.+|+...
T Consensus 5 ~IvaG~NGsGKstv~~~~~ 23 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTL 23 (187)
T ss_pred EEEecCCCCCceeeeeccc
Confidence 4789999999999986543
No 464
>PRK04328 hypothetical protein; Provisional
Probab=90.47 E-value=0.58 Score=44.62 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=33.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..++|.|++|+|||..+ +.++...+. +|..++|+.= .+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~-~~fl~~~~~-------~ge~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFS-QQFLWNGLQ-------MGEPGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCcEEEEEe-eCCHHHHHHHHHHc
Confidence 3556899999999999876 333433333 3667888873 44555555555554
No 465
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.34 E-value=4.3 Score=45.71 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..++++||+|+|||.++
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999875
No 466
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=90.22 E-value=0.6 Score=49.98 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
..+..-|+.|+...+..+-.|+.||.|||||++- +.+++.++....... ....+|++|-|...+.|....+-.
T Consensus 377 ~ildsSq~~A~qs~ltyelsliqgppGTgkt~vt-lkav~tLL~n~s~~~-~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVT-LKAVDTLLLNSSGYT-EPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhhhhhheeecCCCCCceeeh-HHHHHHHHhcccccc-cccceeeeehhhHHHHHHHHHHHh
Confidence 3456679999999888888999999999999997 666777776532211 233489999999888887766543
No 467
>PF12846 AAA_10: AAA-like domain
Probab=90.21 E-value=0.49 Score=46.43 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=30.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
.+++++|+||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999998764 566666553 667888877655544
No 468
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=2.9 Score=43.30 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHH-------HhcC-----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008443 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPV-------ALSG-----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~~~~~Q~~al~~-------l~~~-----~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~ 193 (565)
+|.+++-++.....|+..-.+.=...+.. +... ..+|+.||.|+|||..++-.++.. .
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S----------~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS----------D 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc----------C
Confidence 47778888888877776555444444432 1111 248999999999997653222111 3
Q ss_pred CCeEEEEcCc
Q 008443 194 GPLALVLAPT 203 (565)
Q Consensus 194 ~~~~Lil~P~ 203 (565)
-|.+=++.|.
T Consensus 564 FPFvKiiSpe 573 (744)
T KOG0741|consen 564 FPFVKIISPE 573 (744)
T ss_pred CCeEEEeChH
Confidence 5667777775
No 469
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.81 Score=44.88 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+-+|+.||+|||||+++
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 45999999999999875
No 470
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.94 E-value=3.3 Score=44.50 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.|+.||.|+|||.++ ..+...+.
T Consensus 41 yLf~Gp~G~GKTt~A-r~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSA-RAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHH-HHHHHhhc
Confidence 789999999999876 33444443
No 471
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=1.8 Score=40.36 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||+.+
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 56999999999999865
No 472
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.90 E-value=4.1 Score=41.38 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=14.1
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+|++||.|+|||..+
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999775
No 473
>PHA00012 I assembly protein
Probab=89.87 E-value=5.1 Score=39.17 Aligned_cols=51 Identities=10% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCceEEEecchhhhhhC-CCH----HHHHH-HHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 268 SRVSFVILDEADRMLDM-GFE----PQIRE-VMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~-~~~----~~~~~-i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
..-.++||||||..... ++. ..+.. +..+-....-++++|-.|. .+...+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR 136 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAR 136 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHH
Confidence 46779999999987642 111 22333 3333444566788887775 3444443
No 474
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.83 E-value=1.4 Score=42.48 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.9
Q ss_pred HHHHHhc-C--CCEEEEccCCCchHHH
Q 008443 151 AMPVALS-G--RDLLGCAETGSGKTAA 174 (565)
Q Consensus 151 al~~l~~-~--~~~lv~a~TGsGKT~~ 174 (565)
.++.+.. + +++++.|++|+|||..
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 3455543 3 4789999999999975
No 475
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.83 E-value=0.8 Score=43.94 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=26.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
.|.-++|.|++|+|||... +.++..... +|.+++|+.-.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~-~qf~~~~a~-------~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMV-EQFAVTQAS-------RGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEEec
Confidence 3456899999999999876 333333322 36678998854
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.77 E-value=5.5 Score=40.43 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=70.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (565)
++++|=-|+|||... --+..++.+ .+.++++++ ..|.-|.. .++.+.... ++.+-....+....+.
T Consensus 103 ImmvGLQGsGKTTt~-~KLA~~lkk-------~~~kvllVaaD~~RpAA~e---QL~~La~q~-~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 103 ILMVGLQGSGKTTTA-GKLAKYLKK-------KGKKVLLVAADTYRPAAIE---QLKQLAEQV-GVPFFGSGTEKDPVEI 170 (451)
T ss_pred EEEEeccCCChHhHH-HHHHHHHHH-------cCCceEEEecccCChHHHH---HHHHHHHHc-CCceecCCCCCCHHHH
Confidence 788999999999886 455555554 266677766 23444333 333343322 2222211112111110
Q ss_pred HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhh-hCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHH
Q 008443 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (565)
Q Consensus 239 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 317 (565)
+...+ .. +....+++||||=|-++. +...-..+..|...+.|.--++.+-|+...+....
T Consensus 171 -------------ak~al-~~-----ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 171 -------------AKAAL-EK-----AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred -------------HHHHH-HH-----HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 00111 11 222357889999887654 33345667778888887766777777776555544
Q ss_pred HHhh
Q 008443 318 AQGY 321 (565)
Q Consensus 318 ~~~~ 321 (565)
++.|
T Consensus 232 A~aF 235 (451)
T COG0541 232 AKAF 235 (451)
T ss_pred HHHH
Confidence 4444
No 477
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=89.74 E-value=0.37 Score=52.16 Aligned_cols=70 Identities=10% Similarity=0.224 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 130 PSIMKDIEFHEYTRPTSIQAQAMPVA--LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~al~~l--~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
+++.+.+++.+... ++--..+|.. .+.++++++|.||+|||.+. ..++..+.++ |.++||.=|.-+.+
T Consensus 157 ~~l~k~lk~~~~~s--~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~R-------GdrAIIyD~~GeFv 226 (732)
T PRK13700 157 KDVARMLKKDGKDS--DIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQR-------GDMVVIYDRSGEFV 226 (732)
T ss_pred HHHHHHHHhcCCCC--CeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEeCCCchH
Confidence 45556666665332 2222233332 25578999999999999975 7777776663 66677777776665
Q ss_pred HH
Q 008443 208 QQ 209 (565)
Q Consensus 208 ~Q 209 (565)
..
T Consensus 227 ~~ 228 (732)
T PRK13700 227 KS 228 (732)
T ss_pred HH
Confidence 53
No 478
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.70 E-value=7.5 Score=40.02 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=53.4
Q ss_pred CCCCeEEEEEcchhhHHHHHH---HH-HHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----cc-ccCCCcc
Q 008443 372 HPFPLTIVFVERKTRCDEVSE---AL-VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VA-SRGLDVM 441 (565)
Q Consensus 372 ~~~~~~lvF~~~~~~a~~l~~---~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip 441 (565)
...+-.+|.|++++.|..+.. .| +..|++++.+||+.+..+...-++ -...++|||+ ++ -.++|+.
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccce
Confidence 444557888999998877644 44 345899999999999877665554 3466999996 22 3578888
Q ss_pred CccEEEE
Q 008443 442 GVAHVVN 448 (565)
Q Consensus 442 ~v~~Vi~ 448 (565)
+|.++|+
T Consensus 370 rvS~LV~ 376 (731)
T KOG0339|consen 370 RVSYLVL 376 (731)
T ss_pred eeeEEEE
Confidence 8888764
No 479
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.66 E-value=1.3 Score=50.01 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.8
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.||||+|||.++
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999876
No 480
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.60 E-value=0.36 Score=49.85 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=33.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
..+++++.|+||+|||.+. ..++..+... +.+++|+=|..++..
T Consensus 41 ~~~h~~i~g~tGsGKt~~i-~~l~~~~~~~-------~~~~vi~D~kg~~~~ 84 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQI-RELLASIRAR-------GDRAIIYDPNGGFVS 84 (410)
T ss_pred hhccEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCCEEEEeCCcchhH
Confidence 4568999999999999863 5555555553 557888889888754
No 481
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=89.45 E-value=5 Score=35.59 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=34.7
Q ss_pred CCCceEEEecchhhhhhCCCH--HHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 267 LSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
-..+++||+||+-...+.++. ..+..++...++..-+|+..-.++.++...+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 457999999999988887753 45667777777778788888888777766554
No 482
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.40 E-value=1.1 Score=48.72 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred HhcCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 155 l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
+..|..+-++|+||+|||... .++..+.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~--~LL~r~~ 379 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI--KLLLRLY 379 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhccC
Confidence 346777889999999998763 3444433
No 483
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.32 E-value=1.1 Score=40.61 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=36.7
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCC-C--CCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-G--RGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~-~--~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.|.-+++.|++|+|||... +.+...+....+. . ...+.++||+..... ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~-~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLA-LQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHH-HHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4556899999999999876 5555554432111 0 114567899887655 5677788877764
No 484
>PHA00149 DNA encapsidation protein
Probab=89.28 E-value=3.2 Score=39.48 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=68.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
-+++|+-|.|||++..-.++..+.. +|.+.|+|=-...=+...-.-|.......++.... +.|. .
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~-------kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~-Vkg~-k------ 84 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIK-------KGEQFIYLRRYKSELKKKSKFFADIAQEFPNTEFE-VKGR-K------ 84 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHh-------cCcEEEEEEecchhhhhhhhhhHHHHHhCCCCceE-EEcc-E------
Confidence 4677999999998876555666665 48889998765433322333333333222222211 1121 0
Q ss_pred HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh-hhhCCCHH----HHHHH---HHhCCCCCeEEEEeccc
Q 008443 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEP----QIREV---MQNLPDKHQTLLFSATM 310 (565)
Q Consensus 241 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~-~~~~~~~~----~~~~i---~~~~~~~~~~l~~SAT~ 310 (565)
....+-.|....|=+-+..+ ......++..|++||+-. -...+|.+ .+..+ +.+.+.+++++++|-.-
T Consensus 85 i~~~~k~igy~i~LS~~q~~--Ks~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~ 160 (331)
T PHA00149 85 IYIKGKLIGYAIPLSTWQAL--KSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAV 160 (331)
T ss_pred EEEcCeEEEEEEehhhHHhh--cccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcc
Confidence 11112223333332223333 335567899999999985 22222222 11111 12234567788887553
No 485
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.25 E-value=2.8 Score=39.18 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=28.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
|.-+.|.|++|+|||..++ .++......... .+.+..++|+.....+
T Consensus 19 g~v~~I~G~~GsGKT~l~~-~ia~~~~~~~~~-~g~~~~v~yi~~e~~~ 65 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCL-QLAVEAQLPGEL-GGLEGKVVYIDTEGAF 65 (226)
T ss_pred CcEEEEeCCCCCChhHHHH-HHHHHhhccccc-CCCcceEEEEecCCCC
Confidence 4558999999999998763 343333322100 0113668888876543
No 486
>CHL00176 ftsH cell division protein; Validated
Probab=89.23 E-value=1.5 Score=47.81 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999875
No 487
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=2.3 Score=43.31 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||.|+|||...
T Consensus 187 rglLLfGPpgtGKtmL~ 203 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLA 203 (428)
T ss_pred chhheecCCCCchHHHH
Confidence 35899999999999864
No 488
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.08 E-value=0.26 Score=50.43 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=34.8
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
+++++|+||+|||..+++|-+.. . +..++|+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHHHHHHH
Confidence 47999999999999887765432 1 34588888999998765554443
No 489
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.05 E-value=0.65 Score=44.93 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
.+.+++++|+||||||... -.++..+-. ...+++++-...|+
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~-------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPP-------EDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHT-------TTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhccc-------cccceEEeccccce
Confidence 4568999999999999874 444444332 13567777766666
No 490
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.02 E-value=0.81 Score=45.07 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=31.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
.|+-++|.||+|+|||..+ +.++..... .+..++|+-....+-.+
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~~~~~-------~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIAEAQK-------AGGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEcccchhHHH
Confidence 3456889999999999886 555555444 26678888776655543
No 491
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.01 E-value=7.1 Score=40.89 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH----H
Q 008443 167 TGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----L 242 (565)
Q Consensus 167 TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~ 242 (565)
.+.||+..-++.+.+ +.... -.|.+||-+-+.+=+.|++..+. ..+++.+..++|.......... .
T Consensus 366 vF~gse~~K~lA~rq-~v~~g-----~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQ-LVASG-----FKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred eeeecchhHHHHHHH-HHhcc-----CCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHh
Confidence 377888777554444 44432 34557777777888888888776 2257889999988655433222 2
Q ss_pred hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 243 RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 243 ~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
.+...++||| +.+.++ .++.++.+||.+.+-.
T Consensus 436 ~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred ccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 3678999999 777776 7888999999987763
No 492
>PRK09165 replicative DNA helicase; Provisional
Probab=89.00 E-value=5.7 Score=42.06 Aligned_cols=119 Identities=8% Similarity=0.067 Sum_probs=58.0
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCC--------CCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEE
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--------GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV 230 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~--------~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~ 230 (565)
.-++|.|.||+|||..+ +-+...+...... ....|..|+|+... .=..|+..++-......+ ... +..
T Consensus 218 ~livIaarpg~GKT~~a-l~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~-~~~-i~~ 293 (497)
T PRK09165 218 DLIILAGRPSMGKTALA-TNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEIS-SSK-IRR 293 (497)
T ss_pred ceEEEEeCCCCChHHHH-HHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCC-HHH-Hhc
Confidence 34789999999999876 4443333221000 00125678887653 344556555544432221 111 122
Q ss_pred CCCcHHHHHHHHh-----CCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 231 GGTNIAEQRSELR-----GGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 231 g~~~~~~~~~~~~-----~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
|.....++..... ....+.|- |++.+...+.+-.. -..+++||||=.|.+.
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 3333333322111 22445553 33344333322111 1348899999999764
No 493
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=0.75 Score=51.68 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=32.8
Q ss_pred CCCcccCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYT-RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~-~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
...|+++|....+...|+.+-.. -++|.+..-+ .+..-+.+|.+||.|||||+++
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 46677777667777666554321 1222221111 1123456999999999999875
No 494
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.98 E-value=1.1 Score=44.06 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=32.1
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
|+-+.|.||.|+|||..+ +.++..... .+..++||.....+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLa-l~~~~~~~~-------~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLA-LHAIAEAQK-------LGGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCCEEEECccccHHHH
Confidence 455889999999999876 444444443 36779999987776654
No 495
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.87 E-value=0.94 Score=43.52 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=35.3
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.|+.++|.|++|+|||... +.++..... .|.+++||+- .+...++.+.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~-~qfl~~~~~-------~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFA-LQFLYEGAR-------EGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHHHh-------cCCcEEEEEe-cCCHHHHHHHHHH
Confidence 5677999999999999765 445544444 2666888875 4555556666655
No 496
>PRK06321 replicative DNA helicase; Provisional
Probab=88.71 E-value=7.7 Score=40.73 Aligned_cols=119 Identities=12% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHhcC----CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE
Q 008443 151 AMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 151 al~~l~~~----~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
.|+.+..| .=++|.|.+|.|||..+ +.+...+... .+..++|.... .=..|+..++-..... +..
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafa-l~ia~~~a~~------~g~~v~~fSLE-Ms~~ql~~Rlla~~s~---v~~ 283 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALA-LNIAENFCFQ------NRLPVGIFSLE-MTVDQLIHRIICSRSE---VES 283 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHH-HHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhcC---CCH
Confidence 44554433 34788999999999865 5455544321 25567777643 3344444444332222 111
Q ss_pred EE-EECCCcHHHHHH------HHhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhh
Q 008443 227 AI-VVGGTNIAEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (565)
Q Consensus 227 ~~-~~g~~~~~~~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~ 282 (565)
.. ..|.....++.+ .+. ...+.|- |.+.+.....+-. .-..+++||||=.+.+.
T Consensus 284 ~~i~~~~l~~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 284 KKISVGDLSGRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcC
Confidence 11 123333344432 222 3445554 3344433333211 11348899999999774
No 497
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.68 E-value=0.43 Score=50.34 Aligned_cols=49 Identities=31% Similarity=0.346 Sum_probs=36.8
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+++++|+||||||..+.+|.+. .. +..++|.=|-.+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~-------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY-------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc-------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 46999999999999998877653 22 225888889999987766555544
No 498
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.54 E-value=3 Score=45.32 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
....++|||||+|.+.... ...+.+.++..+....+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4568899999999886432 334455555555555344433
No 499
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.44 E-value=1.2 Score=44.39 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=39.8
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHhc-CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 133 MKDIEFHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~al~~l~~-~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
++.+...|. +.+.+.+.+..+.. +.+++++|+||+|||... -.++.. +. ...+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~-i~-------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLAL-VA-------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHcc-CC-------CCCcEEEECCccee
Confidence 455555554 45677777776654 458999999999999753 222222 21 13456776666666
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.37 E-value=0.91 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
.|+.+.++|++|+|||.. +.++..
T Consensus 360 ~G~~vaIvG~SGsGKSTL--l~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTL--LMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhc
Confidence 678899999999999975 444443
Done!