Query 008443
Match_columns 565
No_of_seqs 460 out of 3864
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.1E-60 2.1E-64 490.1 45.9 372 114-496 49-423 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.7E-56 5.7E-61 464.0 44.7 375 114-497 8-399 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 9.4E-56 3.2E-60 457.2 40.0 363 118-495 34-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 1E-53 3.6E-58 440.5 42.3 360 119-494 19-378 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2.9E-54 9.9E-59 446.7 38.3 364 117-495 36-401 (414)
6 1xti_A Probable ATP-dependent 100.0 5.9E-53 2E-57 433.5 41.1 359 121-493 8-370 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.1E-52 3.6E-57 434.7 41.0 361 117-494 21-393 (412)
8 1hv8_A Putative ATP-dependent 100.0 1.6E-52 5.3E-57 426.5 41.5 354 120-495 5-359 (367)
9 3pey_A ATP-dependent RNA helic 100.0 2.3E-52 7.9E-57 429.6 40.9 357 119-494 3-370 (395)
10 1fuu_A Yeast initiation factor 100.0 8.6E-54 2.9E-58 440.2 24.9 363 116-494 16-379 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 4.8E-52 1.6E-56 446.9 39.5 369 120-493 16-410 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 2.1E-51 7.1E-56 441.8 40.9 361 128-493 79-461 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 2.6E-53 9.1E-58 447.3 21.2 359 118-493 89-459 (479)
14 2z0m_A 337AA long hypothetical 100.0 3.7E-50 1.3E-54 404.0 37.6 334 128-493 1-334 (337)
15 3fho_A ATP-dependent RNA helic 100.0 1.4E-51 4.9E-56 435.3 20.4 381 91-493 92-483 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 5.4E-49 1.8E-53 419.3 32.4 340 124-489 24-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.1E-48 7.2E-53 410.9 33.2 339 121-490 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 4.2E-47 1.4E-51 392.7 29.6 325 132-494 10-376 (414)
19 3l9o_A ATP-dependent RNA helic 100.0 5.5E-45 1.9E-49 412.1 25.7 341 120-488 161-605 (1108)
20 2va8_A SSO2462, SKI2-type heli 100.0 6.6E-44 2.2E-48 393.3 32.5 337 121-483 8-410 (715)
21 2zj8_A DNA helicase, putative 100.0 8.1E-45 2.8E-49 400.3 24.0 332 122-482 2-388 (720)
22 3tbk_A RIG-I helicase domain; 100.0 2.2E-43 7.4E-48 379.3 34.0 335 142-489 3-515 (555)
23 4a2p_A RIG-I, retinoic acid in 100.0 5.6E-44 1.9E-48 384.0 29.3 332 140-484 4-511 (556)
24 2ykg_A Probable ATP-dependent 100.0 3.5E-44 1.2E-48 395.4 25.2 345 134-489 4-524 (696)
25 2p6r_A Afuhel308 helicase; pro 100.0 2E-44 6.9E-49 396.1 19.4 332 122-483 2-390 (702)
26 2xgj_A ATP-dependent RNA helic 100.0 1.2E-42 4.1E-47 389.7 34.0 319 143-489 86-508 (1010)
27 4a2q_A RIG-I, retinoic acid in 100.0 7.3E-43 2.5E-47 388.4 31.6 336 138-484 243-752 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 4.5E-42 1.5E-46 362.9 33.2 325 143-483 9-477 (494)
29 4ddu_A Reverse gyrase; topoiso 100.0 1.2E-42 4.2E-47 392.8 30.2 323 138-496 74-505 (1104)
30 1tf5_A Preprotein translocase 100.0 3.2E-41 1.1E-45 359.0 35.5 323 138-483 79-547 (844)
31 4gl2_A Interferon-induced heli 100.0 4.7E-43 1.6E-47 386.6 16.3 329 142-481 6-519 (699)
32 4a2w_A RIG-I, retinoic acid in 100.0 8.6E-42 2.9E-46 383.4 26.5 336 137-483 242-751 (936)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 3.1E-42 1.1E-46 390.0 22.0 320 138-495 53-468 (1054)
34 1gm5_A RECG; helicase, replica 100.0 1.3E-41 4.5E-46 369.7 24.1 326 132-489 358-705 (780)
35 4a4z_A Antiviral helicase SKI2 100.0 4.3E-41 1.5E-45 377.2 28.6 316 143-488 39-501 (997)
36 4f92_B U5 small nuclear ribonu 100.0 3.2E-40 1.1E-44 385.6 33.8 349 128-489 911-1316(1724)
37 2eyq_A TRCF, transcription-rep 100.0 7E-40 2.4E-44 372.7 35.6 323 127-482 587-923 (1151)
38 2fsf_A Preprotein translocase 100.0 7.6E-40 2.6E-44 347.3 28.5 322 139-483 71-585 (853)
39 1nkt_A Preprotein translocase 100.0 9.4E-39 3.2E-43 339.1 36.8 325 138-485 107-621 (922)
40 2oca_A DAR protein, ATP-depend 100.0 1.8E-40 6E-45 352.4 22.6 312 142-479 112-453 (510)
41 4f92_B U5 small nuclear ribonu 100.0 9E-40 3.1E-44 381.8 28.4 342 139-489 75-481 (1724)
42 2fwr_A DNA repair protein RAD2 100.0 1.5E-39 5.3E-44 341.7 19.0 289 142-477 92-448 (472)
43 2whx_A Serine protease/ntpase/ 100.0 2.2E-40 7.6E-45 354.0 6.9 314 126-493 155-493 (618)
44 2xau_A PRE-mRNA-splicing facto 100.0 6.5E-38 2.2E-42 343.2 25.9 340 118-483 69-445 (773)
45 2jlq_A Serine protease subunit 100.0 7.6E-39 2.6E-43 332.5 14.9 287 140-480 1-310 (451)
46 3fe2_A Probable ATP-dependent 100.0 1.3E-36 4.6E-41 289.8 29.3 237 92-333 4-240 (242)
47 3h1t_A Type I site-specific re 100.0 5E-38 1.7E-42 339.0 21.7 317 142-480 177-557 (590)
48 3o8b_A HCV NS3 protease/helica 100.0 3.8E-38 1.3E-42 333.1 14.9 280 142-485 216-518 (666)
49 1yks_A Genome polyprotein [con 100.0 1.7E-39 5.6E-44 335.9 3.2 279 154-493 4-314 (440)
50 2wv9_A Flavivirin protease NS2 100.0 7.2E-38 2.5E-42 336.5 13.4 305 136-493 203-548 (673)
51 2z83_A Helicase/nucleoside tri 100.0 2.8E-37 9.7E-42 321.2 13.2 278 147-481 10-313 (459)
52 3dmq_A RNA polymerase-associat 100.0 6.2E-36 2.1E-40 336.3 22.7 332 142-493 152-625 (968)
53 2v6i_A RNA helicase; membrane, 100.0 4.2E-36 1.4E-40 309.8 17.3 269 157-478 1-288 (431)
54 1z63_A Helicase of the SNF2/RA 100.0 1.3E-34 4.6E-39 306.4 27.0 308 142-478 36-448 (500)
55 3iuy_A Probable ATP-dependent 100.0 1.6E-34 5.5E-39 273.0 24.6 216 112-329 10-227 (228)
56 1vec_A ATP-dependent RNA helic 100.0 1.5E-33 5.3E-38 262.0 26.0 203 121-328 3-205 (206)
57 2oxc_A Probable ATP-dependent 100.0 1E-33 3.5E-38 267.6 24.7 210 115-330 18-228 (230)
58 1wrb_A DJVLGB; RNA helicase, D 100.0 8E-34 2.7E-38 272.6 24.3 222 118-340 20-249 (253)
59 3rc3_A ATP-dependent RNA helic 100.0 4.6E-34 1.6E-38 305.9 25.0 281 154-488 151-451 (677)
60 3ber_A Probable ATP-dependent 100.0 3.1E-33 1.1E-37 267.1 26.9 208 118-331 40-248 (249)
61 3mwy_W Chromo domain-containin 100.0 4.7E-33 1.6E-37 308.6 31.5 371 80-478 180-679 (800)
62 3bor_A Human initiation factor 100.0 1.5E-33 5E-38 267.7 23.0 211 115-331 24-235 (237)
63 1q0u_A Bstdead; DEAD protein, 100.0 9.7E-34 3.3E-38 265.8 21.3 208 120-332 3-213 (219)
64 1z3i_X Similar to RAD54-like; 100.0 3.7E-32 1.3E-36 294.0 36.5 327 143-478 55-523 (644)
65 2pl3_A Probable ATP-dependent 100.0 1.5E-32 5.1E-37 260.9 28.2 227 93-331 6-233 (236)
66 1qde_A EIF4A, translation init 100.0 5.2E-33 1.8E-37 262.0 24.3 211 115-332 8-218 (224)
67 3jux_A Protein translocase sub 100.0 1.2E-31 4.2E-36 278.6 36.4 319 142-485 74-591 (822)
68 3fmo_B ATP-dependent RNA helic 100.0 3.6E-33 1.2E-37 273.6 23.2 206 118-331 89-298 (300)
69 2gxq_A Heat resistant RNA depe 100.0 1.1E-32 3.8E-37 256.4 25.3 204 122-330 2-205 (207)
70 1t6n_A Probable ATP-dependent 100.0 1.7E-32 5.8E-37 257.7 22.8 206 119-329 12-219 (220)
71 3ly5_A ATP-dependent RNA helic 100.0 3E-32 1E-36 262.3 24.4 203 121-325 52-257 (262)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.8E-33 3.3E-37 307.6 22.4 320 142-480 270-708 (1038)
73 3dkp_A Probable ATP-dependent 100.0 2.6E-32 8.9E-37 260.8 21.5 229 95-332 3-242 (245)
74 2ipc_A Preprotein translocase 100.0 8.8E-27 3E-31 246.7 37.9 320 138-483 75-700 (997)
75 1c4o_A DNA nucleotide excision 100.0 2.1E-27 7E-32 256.5 29.1 133 350-490 422-559 (664)
76 2d7d_A Uvrabc system protein B 100.0 2.9E-26 9.9E-31 247.4 31.4 175 300-490 386-565 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 2E-25 6.7E-30 198.5 18.8 150 336-494 6-155 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 5.1E-26 1.7E-30 207.1 13.8 168 319-496 9-177 (191)
79 1fuk_A Eukaryotic initiation f 99.9 8.6E-25 2.9E-29 194.8 18.5 147 339-494 3-150 (165)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.5E-25 1.5E-29 200.0 16.1 154 335-496 15-168 (185)
81 1t5i_A C_terminal domain of A 99.9 7.5E-25 2.6E-29 196.3 16.5 148 338-494 4-152 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 1.2E-24 4E-29 196.0 17.3 149 337-494 5-160 (175)
83 3eaq_A Heat resistant RNA depe 99.9 5.9E-24 2E-28 197.2 18.3 144 343-495 9-152 (212)
84 3i32_A Heat resistant RNA depe 99.9 3.3E-23 1.1E-27 201.1 18.5 147 340-495 3-149 (300)
85 3b6e_A Interferon-induced heli 99.9 6.4E-24 2.2E-28 198.4 11.7 167 139-309 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 7.7E-25 2.6E-29 196.1 0.0 145 340-493 4-149 (170)
87 2vl7_A XPD; helicase, unknown 99.9 7.4E-22 2.5E-26 209.0 22.4 101 375-481 385-521 (540)
88 1rif_A DAR protein, DNA helica 99.9 3.9E-22 1.3E-26 194.1 10.1 155 142-314 112-266 (282)
89 3llm_A ATP-dependent RNA helic 99.9 2.6E-21 9.1E-26 182.8 15.5 173 130-314 48-222 (235)
90 3crv_A XPD/RAD3 related DNA he 99.9 2.3E-19 8E-24 190.6 30.9 313 143-481 3-531 (551)
91 2fz4_A DNA repair protein RAD2 99.8 1.1E-19 3.7E-24 171.4 15.0 140 142-314 92-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1.8E-17 6E-22 177.5 25.1 81 143-231 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.8E-18 1.6E-22 162.9 13.4 123 348-477 93-218 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.3E-08 4.5E-13 108.7 10.6 146 145-309 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.5 8.9E-07 3E-11 93.6 13.0 128 142-309 188-315 (574)
96 4b3f_X DNA-binding protein smu 98.5 4.7E-07 1.6E-11 97.8 10.7 68 142-217 188-256 (646)
97 3upu_A ATP-dependent DNA helic 98.4 9.6E-07 3.3E-11 91.3 11.9 133 139-309 21-164 (459)
98 2gk6_A Regulator of nonsense t 98.4 2.3E-06 7.8E-11 91.9 15.2 70 141-217 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.4 3.1E-06 1.1E-10 92.9 15.4 70 141-217 358-427 (802)
100 2wjy_A Regulator of nonsense t 98.3 4.6E-06 1.6E-10 91.4 15.0 69 141-216 354-422 (800)
101 3lfu_A DNA helicase II; SF1 he 98.3 4.5E-05 1.5E-09 82.6 22.8 72 142-219 8-79 (647)
102 3hgt_A HDA1 complex subunit 3; 97.9 4.1E-05 1.4E-09 73.3 9.9 122 349-482 107-238 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.001 3.5E-08 66.0 14.5 74 143-222 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.3 0.0029 9.9E-08 67.3 14.8 121 143-283 163-287 (592)
105 3ec2_A DNA replication protein 97.0 0.0024 8.1E-08 56.4 9.0 38 145-183 16-62 (180)
106 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0024 8.3E-08 69.6 10.7 109 142-279 10-120 (724)
107 3vkw_A Replicase large subunit 97.0 0.0013 4.4E-08 66.2 7.6 106 161-309 164-269 (446)
108 2orw_A Thymidine kinase; TMTK, 96.9 0.00048 1.6E-08 61.3 3.7 39 158-204 3-41 (184)
109 3te6_A Regulatory protein SIR3 96.8 0.015 5.3E-07 56.0 13.3 27 158-185 45-71 (318)
110 2b8t_A Thymidine kinase; deoxy 96.8 0.0015 5E-08 59.8 5.5 113 158-308 12-124 (223)
111 1xx6_A Thymidine kinase; NESG, 96.7 0.0041 1.4E-07 55.3 7.6 38 158-203 8-45 (191)
112 2j9r_A Thymidine kinase; TK1, 96.6 0.0031 1.1E-07 56.7 6.7 39 158-204 28-66 (214)
113 2kjq_A DNAA-related protein; s 96.5 0.0012 4.2E-08 56.3 2.9 19 157-175 35-53 (149)
114 1jbk_A CLPB protein; beta barr 96.4 0.032 1.1E-06 49.1 12.2 25 159-184 44-68 (195)
115 1d2n_A N-ethylmaleimide-sensit 96.4 0.019 6.6E-07 54.3 11.2 16 160-175 66-81 (272)
116 1a5t_A Delta prime, HOLB; zinc 96.4 0.019 6.5E-07 56.2 11.3 41 144-185 3-50 (334)
117 1uaa_A REP helicase, protein ( 96.3 0.0057 1.9E-07 66.3 7.6 71 143-219 2-72 (673)
118 1l8q_A Chromosomal replication 96.3 0.013 4.4E-07 57.1 9.4 37 158-202 37-73 (324)
119 2orv_A Thymidine kinase; TP4A 96.3 0.016 5.3E-07 52.7 9.0 39 158-204 19-57 (234)
120 2p65_A Hypothetical protein PF 96.3 0.017 6E-07 50.6 9.5 25 158-183 43-67 (187)
121 2w58_A DNAI, primosome compone 96.2 0.028 9.6E-07 50.4 10.6 25 159-184 55-79 (202)
122 2zpa_A Uncharacterized protein 96.2 0.0089 3E-07 63.2 8.1 112 143-310 175-288 (671)
123 3u61_B DNA polymerase accessor 96.2 0.027 9.2E-07 54.8 11.2 41 269-309 105-145 (324)
124 2chg_A Replication factor C sm 96.2 0.058 2E-06 48.7 12.8 42 268-310 101-142 (226)
125 1w4r_A Thymidine kinase; type 96.1 0.017 6E-07 51.0 8.4 38 158-203 20-57 (195)
126 2v1u_A Cell division control p 96.1 0.04 1.4E-06 54.8 12.0 25 158-183 44-68 (387)
127 3kl4_A SRP54, signal recogniti 96.1 0.034 1.2E-06 56.0 11.1 55 267-321 177-234 (433)
128 2qby_B CDC6 homolog 3, cell di 96.0 0.022 7.4E-07 56.9 9.4 38 272-310 136-174 (384)
129 3h4m_A Proteasome-activating n 95.9 0.039 1.3E-06 52.4 10.4 54 120-175 13-68 (285)
130 3e2i_A Thymidine kinase; Zn-bi 95.7 0.014 4.7E-07 52.4 5.9 39 158-204 28-66 (219)
131 2z4s_A Chromosomal replication 95.6 0.054 1.9E-06 55.1 10.7 39 158-202 130-168 (440)
132 3u4q_A ATP-dependent helicase/ 95.6 0.021 7.1E-07 66.1 8.4 109 143-262 10-118 (1232)
133 3bos_A Putative DNA replicatio 95.6 0.017 6E-07 53.1 6.3 26 157-183 51-76 (242)
134 3syl_A Protein CBBX; photosynt 95.4 0.038 1.3E-06 53.2 8.2 24 159-183 68-91 (309)
135 1fnn_A CDC6P, cell division co 95.3 0.022 7.4E-07 56.9 6.5 16 160-175 46-61 (389)
136 3eie_A Vacuolar protein sortin 95.2 0.13 4.5E-06 49.8 11.7 17 159-175 52-68 (322)
137 1g5t_A COB(I)alamin adenosyltr 95.1 0.16 5.3E-06 44.9 10.6 52 268-319 119-172 (196)
138 3cf0_A Transitional endoplasmi 95.0 0.18 6E-06 48.4 11.8 19 157-175 48-66 (301)
139 3dm5_A SRP54, signal recogniti 95.0 0.2 7E-06 50.4 12.3 130 160-320 102-234 (443)
140 3pfi_A Holliday junction ATP-d 94.9 0.19 6.5E-06 49.0 11.8 17 159-175 56-72 (338)
141 2gno_A DNA polymerase III, gam 94.9 0.16 5.5E-06 48.7 10.8 41 268-309 81-121 (305)
142 2qby_A CDC6 homolog 1, cell di 94.9 0.17 5.8E-06 50.1 11.5 25 158-183 45-69 (386)
143 1sxj_D Activator 1 41 kDa subu 94.8 0.17 5.8E-06 49.5 11.2 42 268-310 132-173 (353)
144 1gm5_A RECG; helicase, replica 94.6 0.15 5.2E-06 55.6 11.1 76 376-451 419-499 (780)
145 4b4t_J 26S protease regulatory 94.6 0.19 6.4E-06 49.9 10.7 54 119-175 143-199 (405)
146 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.58 2E-05 43.4 13.9 18 158-175 39-56 (262)
147 2bjv_A PSP operon transcriptio 94.5 0.087 3E-06 49.4 8.0 19 157-175 28-46 (265)
148 1njg_A DNA polymerase III subu 94.5 0.65 2.2E-05 42.1 14.0 40 269-309 126-165 (250)
149 1iqp_A RFCS; clamp loader, ext 94.5 0.24 8.3E-06 47.7 11.4 42 268-310 109-150 (327)
150 1sxj_C Activator 1 40 kDa subu 94.4 0.15 5.3E-06 49.7 9.8 39 268-307 109-147 (340)
151 3uk6_A RUVB-like 2; hexameric 94.3 0.33 1.1E-05 47.8 12.0 23 159-182 71-93 (368)
152 3pvs_A Replication-associated 94.0 0.073 2.5E-06 54.2 6.5 16 160-175 52-67 (447)
153 1sxj_E Activator 1 40 kDa subu 93.9 0.21 7.3E-06 48.9 9.7 43 268-311 133-175 (354)
154 1sxj_B Activator 1 37 kDa subu 93.9 0.2 6.8E-06 48.3 9.3 40 269-309 107-146 (323)
155 2r6a_A DNAB helicase, replicat 93.8 0.21 7.3E-06 50.9 9.8 50 157-214 202-251 (454)
156 1sxj_A Activator 1 95 kDa subu 93.7 0.25 8.6E-06 51.3 10.1 41 268-310 147-189 (516)
157 1hqc_A RUVB; extended AAA-ATPa 93.7 0.52 1.8E-05 45.4 11.8 17 159-175 39-55 (324)
158 3hu3_A Transitional endoplasmi 93.6 0.16 5.6E-06 52.2 8.4 18 158-175 238-255 (489)
159 2qp9_X Vacuolar protein sortin 93.6 0.16 5.5E-06 50.0 8.0 17 159-175 85-101 (355)
160 3vfd_A Spastin; ATPase, microt 93.5 0.46 1.6E-05 47.3 11.4 18 158-175 148-165 (389)
161 2q6t_A DNAB replication FORK h 93.2 0.31 1.1E-05 49.5 9.7 114 158-283 200-324 (444)
162 1w5s_A Origin recognition comp 93.1 0.16 5.6E-06 50.9 7.4 22 160-182 52-75 (412)
163 4b4t_K 26S protease regulatory 93.0 0.69 2.4E-05 46.4 11.5 17 159-175 207-223 (428)
164 1jr3_A DNA polymerase III subu 92.9 0.97 3.3E-05 44.4 12.7 40 268-308 118-157 (373)
165 3hjh_A Transcription-repair-co 92.7 0.39 1.3E-05 49.1 9.5 52 157-219 13-64 (483)
166 3oiy_A Reverse gyrase helicase 92.6 0.25 8.6E-06 49.6 7.9 76 375-451 65-148 (414)
167 2fna_A Conserved hypothetical 91.8 4 0.00014 39.4 15.6 37 270-307 138-177 (357)
168 2chq_A Replication factor C sm 91.4 0.16 5.4E-06 48.9 4.6 22 160-182 40-61 (319)
169 2qgz_A Helicase loader, putati 91.2 0.31 1.1E-05 46.8 6.5 36 158-201 152-188 (308)
170 3co5_A Putative two-component 91.1 0.17 5.9E-06 42.3 4.0 20 156-175 25-44 (143)
171 3n70_A Transport activator; si 90.8 0.2 6.8E-06 42.0 4.1 19 157-175 23-41 (145)
172 2eyu_A Twitching motility prot 89.8 0.3 1E-05 45.6 4.8 21 155-175 22-42 (261)
173 1n0w_A DNA repair protein RAD5 89.8 1.1 3.7E-05 40.9 8.7 19 157-175 23-41 (243)
174 1ls1_A Signal recognition part 89.8 3.9 0.00013 38.7 12.7 35 159-201 99-133 (295)
175 2p6n_A ATP-dependent RNA helic 89.8 3.6 0.00012 36.0 11.7 73 194-277 54-130 (191)
176 4ddu_A Reverse gyrase; topoiso 89.4 0.92 3.1E-05 51.6 9.2 76 375-451 122-205 (1104)
177 2eyq_A TRCF, transcription-rep 89.2 1.3 4.5E-05 50.6 10.4 74 375-448 653-731 (1151)
178 4a1f_A DNAB helicase, replicat 89.1 0.29 9.9E-06 47.5 4.2 52 157-217 45-96 (338)
179 1r6b_X CLPA protein; AAA+, N-t 89.1 0.85 2.9E-05 49.9 8.4 18 158-175 207-224 (758)
180 2hjv_A ATP-dependent RNA helic 88.9 2.8 9.4E-05 35.6 10.0 74 194-278 35-112 (163)
181 4b4t_M 26S protease regulatory 88.7 0.38 1.3E-05 48.4 4.8 56 117-175 174-232 (434)
182 2l8b_A Protein TRAI, DNA helic 88.5 0.44 1.5E-05 41.2 4.4 57 145-208 36-94 (189)
183 2dr3_A UPF0273 protein PH0284; 87.4 0.74 2.5E-05 42.1 5.7 50 157-215 22-71 (247)
184 1e9r_A Conjugal transfer prote 86.5 0.71 2.4E-05 46.7 5.5 44 157-208 52-95 (437)
185 3fe2_A Probable ATP-dependent 86.5 4.3 0.00015 37.0 10.4 73 374-450 102-184 (242)
186 3jvv_A Twitching mobility prot 86.4 1.4 4.8E-05 43.1 7.3 19 157-175 122-140 (356)
187 1fuk_A Eukaryotic initiation f 86.2 5.8 0.0002 33.6 10.5 73 194-277 30-106 (165)
188 2rb4_A ATP-dependent RNA helic 86.2 4.2 0.00014 34.8 9.7 71 194-275 34-108 (175)
189 1t5i_A C_terminal domain of A 86.0 9.5 0.00033 32.5 11.9 74 194-278 31-108 (172)
190 3e70_C DPA, signal recognition 85.9 10 0.00036 36.3 13.1 53 269-321 211-264 (328)
191 2pl3_A Probable ATP-dependent 85.8 4.1 0.00014 36.9 9.9 70 374-448 97-177 (236)
192 1t6n_A Probable ATP-dependent 85.7 2.9 9.8E-05 37.4 8.7 71 375-448 83-164 (220)
193 1p9r_A General secretion pathw 85.6 1.4 4.8E-05 44.1 7.0 27 148-174 155-183 (418)
194 3cf2_A TER ATPase, transitiona 85.5 1 3.5E-05 49.0 6.3 17 159-175 239-255 (806)
195 4b4t_H 26S protease regulatory 85.4 0.48 1.6E-05 47.7 3.4 55 118-175 203-260 (467)
196 3eaq_A Heat resistant RNA depe 85.1 5.2 0.00018 35.6 10.0 71 194-275 31-105 (212)
197 4b4t_L 26S protease subunit RP 85.1 0.68 2.3E-05 46.5 4.4 17 159-175 216-232 (437)
198 1ofh_A ATP-dependent HSL prote 84.4 2.2 7.4E-05 40.5 7.6 18 158-175 50-67 (310)
199 1ypw_A Transitional endoplasmi 84.3 3.8 0.00013 44.9 10.3 19 157-175 237-255 (806)
200 2zts_A Putative uncharacterize 84.1 0.95 3.2E-05 41.5 4.7 51 157-216 29-80 (251)
201 3cmu_A Protein RECA, recombina 83.6 1.7 5.8E-05 51.9 7.4 49 152-208 1415-1469(2050)
202 3b85_A Phosphate starvation-in 83.5 0.95 3.2E-05 40.5 4.2 37 145-183 9-45 (208)
203 1lv7_A FTSH; alpha/beta domain 83.4 1.4 4.8E-05 40.7 5.6 17 159-175 46-62 (257)
204 1oyw_A RECQ helicase, ATP-depe 82.4 2.2 7.6E-05 44.2 7.1 58 375-432 66-123 (523)
205 3hws_A ATP-dependent CLP prote 82.3 1.5 5E-05 43.1 5.5 18 158-175 51-68 (363)
206 1xwi_A SKD1 protein; VPS4B, AA 82.2 2 6.9E-05 41.3 6.3 17 159-175 46-62 (322)
207 2ffh_A Protein (FFH); SRP54, s 82.1 8.3 0.00029 38.5 10.9 34 160-201 100-133 (425)
208 3i5x_A ATP-dependent RNA helic 82.0 14 0.00047 38.4 13.3 78 193-278 338-419 (563)
209 3bh0_A DNAB-like replicative h 82.0 2.7 9.3E-05 40.2 7.1 52 157-217 67-118 (315)
210 3nbx_X ATPase RAVA; AAA+ ATPas 82.0 1.4 4.9E-05 45.2 5.4 27 149-175 32-58 (500)
211 3nwn_A Kinesin-like protein KI 81.9 0.91 3.1E-05 44.3 3.6 25 151-175 96-122 (359)
212 2j37_W Signal recognition part 81.8 8.9 0.0003 39.2 11.1 35 160-202 103-137 (504)
213 2r44_A Uncharacterized protein 81.7 0.7 2.4E-05 44.7 2.9 24 152-175 40-63 (331)
214 1tue_A Replication protein E1; 81.3 2 6.8E-05 38.1 5.3 50 130-182 28-81 (212)
215 4b4t_I 26S protease regulatory 81.2 0.68 2.3E-05 46.2 2.5 17 159-175 217-233 (437)
216 2v1x_A ATP-dependent DNA helic 81.0 2.4 8.4E-05 44.6 6.9 58 375-432 85-144 (591)
217 1u0j_A DNA replication protein 81.0 3.3 0.00011 38.4 6.9 43 130-175 73-121 (267)
218 3ber_A Probable ATP-dependent 81.0 12 0.00042 34.1 11.0 71 375-449 112-193 (249)
219 2r8r_A Sensor protein; KDPD, P 80.9 1.6 5.6E-05 39.3 4.7 25 160-185 8-32 (228)
220 3hr8_A Protein RECA; alpha and 80.9 1.3 4.4E-05 43.2 4.4 42 158-207 61-102 (356)
221 2w0m_A SSO2452; RECA, SSPF, un 80.9 1.4 4.8E-05 39.7 4.5 50 157-215 22-71 (235)
222 2oxc_A Probable ATP-dependent 80.7 4 0.00014 36.8 7.5 69 375-448 93-172 (230)
223 1bg2_A Kinesin; motor protein, 80.5 1.1 3.8E-05 43.1 3.7 25 151-175 69-95 (325)
224 3b9p_A CG5977-PA, isoform A; A 80.3 2.3 7.9E-05 40.2 6.0 18 158-175 54-71 (297)
225 4dzz_A Plasmid partitioning pr 79.9 2.9 9.8E-05 36.9 6.1 31 163-201 7-37 (206)
226 3iuy_A Probable ATP-dependent 79.8 4.2 0.00014 36.5 7.3 71 374-448 94-173 (228)
227 2l82_A Designed protein OR32; 79.7 7.7 0.00026 29.6 7.2 52 377-428 5-56 (162)
228 3dc4_A Kinesin-like protein NO 79.7 1.1 3.8E-05 43.4 3.4 25 151-175 86-112 (344)
229 2gxq_A Heat resistant RNA depe 79.6 6 0.00021 34.7 8.2 71 374-448 72-150 (207)
230 2px0_A Flagellar biosynthesis 79.6 2 6.7E-05 40.8 5.1 37 158-201 105-141 (296)
231 3sqw_A ATP-dependent RNA helic 79.5 19 0.00065 37.6 13.3 79 193-279 287-369 (579)
232 1u94_A RECA protein, recombina 79.4 1.5 5.2E-05 42.8 4.4 42 157-206 62-103 (356)
233 2oap_1 GSPE-2, type II secreti 79.3 1.3 4.4E-05 45.7 3.9 40 133-174 236-276 (511)
234 2vvg_A Kinesin-2; motor protei 79.2 1.3 4.4E-05 43.1 3.7 25 151-175 81-107 (350)
235 1goj_A Kinesin, kinesin heavy 79.1 1.3 4.4E-05 43.2 3.7 25 151-175 72-98 (355)
236 3io5_A Recombination and repai 79.1 1.6 5.3E-05 41.7 4.1 43 160-208 30-72 (333)
237 3ly5_A ATP-dependent RNA helic 79.0 12 0.00042 34.4 10.4 71 374-448 126-207 (262)
238 3b6u_A Kinesin-like protein KI 78.9 1.3 4.4E-05 43.4 3.6 25 151-175 93-119 (372)
239 2y65_A Kinesin, kinesin heavy 78.8 1.3 4.6E-05 43.2 3.7 25 151-175 76-102 (365)
240 3bor_A Human initiation factor 78.8 3.7 0.00013 37.2 6.7 71 375-448 99-179 (237)
241 4a14_A Kinesin, kinesin-like p 78.8 1.3 4.6E-05 42.9 3.7 25 151-175 75-101 (344)
242 2h58_A Kinesin-like protein KI 78.8 1.4 4.6E-05 42.6 3.7 26 150-175 71-98 (330)
243 3lre_A Kinesin-like protein KI 78.7 1.3 4.6E-05 43.1 3.7 25 151-175 97-123 (355)
244 1t5c_A CENP-E protein, centrom 78.6 1.3 4.6E-05 42.9 3.6 25 151-175 69-95 (349)
245 2nr8_A Kinesin-like protein KI 78.5 1.4 4.6E-05 43.1 3.6 25 151-175 95-121 (358)
246 3a8t_A Adenylate isopentenyltr 78.5 0.78 2.7E-05 44.2 1.9 17 159-175 41-57 (339)
247 3gbj_A KIF13B protein; kinesin 78.5 1.4 4.7E-05 43.0 3.6 25 151-175 84-110 (354)
248 2r62_A Cell division protease 78.4 1.5 5E-05 40.8 3.8 18 158-175 44-61 (268)
249 2zfi_A Kinesin-like protein KI 78.2 1.4 4.9E-05 43.1 3.7 25 151-175 81-107 (366)
250 2jgn_A DBX, DDX3, ATP-dependen 78.2 4.7 0.00016 35.0 6.8 71 194-275 46-120 (185)
251 2z43_A DNA repair and recombin 78.1 2.4 8.2E-05 40.8 5.3 63 151-215 95-163 (324)
252 2xxa_A Signal recognition part 77.9 8.5 0.00029 38.6 9.4 42 160-208 102-145 (433)
253 2i4i_A ATP-dependent RNA helic 77.8 11 0.00039 37.1 10.5 72 193-275 275-350 (417)
254 2qmh_A HPR kinase/phosphorylas 77.8 0.98 3.3E-05 39.9 2.1 19 157-175 33-51 (205)
255 3foz_A TRNA delta(2)-isopenten 77.8 1.3 4.6E-05 42.0 3.2 20 161-181 13-32 (316)
256 3exa_A TRNA delta(2)-isopenten 77.7 1.1 3.7E-05 42.8 2.6 21 160-181 5-25 (322)
257 1f9v_A Kinesin-like protein KA 77.6 1.6 5.4E-05 42.4 3.8 25 151-175 76-102 (347)
258 1v8k_A Kinesin-like protein KI 77.5 1.4 4.7E-05 43.8 3.4 25 151-175 146-172 (410)
259 1x88_A Kinesin-like protein KI 77.4 1.4 4.7E-05 43.1 3.3 25 151-175 80-106 (359)
260 2zr9_A Protein RECA, recombina 77.4 2 6.9E-05 41.8 4.5 41 158-206 61-101 (349)
261 1kgd_A CASK, peripheral plasma 77.3 1.1 3.8E-05 38.9 2.4 19 157-175 4-22 (180)
262 3t15_A Ribulose bisphosphate c 77.2 1.4 4.9E-05 41.7 3.3 17 159-175 37-53 (293)
263 1ojl_A Transcriptional regulat 77.2 1.6 5.6E-05 41.6 3.8 19 157-175 24-42 (304)
264 3t0q_A AGR253WP; kinesin, alph 77.2 1.4 4.9E-05 42.8 3.4 25 151-175 77-103 (349)
265 3vaa_A Shikimate kinase, SK; s 77.1 1.7 5.7E-05 38.4 3.6 19 157-175 24-42 (199)
266 4ag6_A VIRB4 ATPase, type IV s 77.0 3.2 0.00011 41.1 6.0 42 157-206 34-75 (392)
267 2wbe_C Bipolar kinesin KRP-130 76.9 1.5 5E-05 43.1 3.4 25 151-175 92-118 (373)
268 1wrb_A DJVLGB; RNA helicase, D 76.9 19 0.00064 32.7 11.0 70 375-448 101-180 (253)
269 2c9o_A RUVB-like 1; hexameric 76.9 2.4 8.3E-05 43.0 5.2 18 158-175 63-80 (456)
270 2heh_A KIF2C protein; kinesin, 76.7 1.5 5.2E-05 43.1 3.4 25 151-175 126-152 (387)
271 2ewv_A Twitching motility prot 76.7 1.6 5.6E-05 42.9 3.7 20 156-175 134-153 (372)
272 4etp_A Kinesin-like protein KA 76.4 1.7 5.8E-05 43.2 3.7 25 151-175 132-158 (403)
273 1nlf_A Regulatory protein REPA 76.4 4.1 0.00014 38.1 6.3 62 154-217 26-90 (279)
274 2owm_A Nckin3-434, related to 76.1 1.7 5.9E-05 43.7 3.7 25 151-175 128-154 (443)
275 1xti_A Probable ATP-dependent 76.1 7.8 0.00027 37.9 8.6 71 375-448 77-158 (391)
276 3i32_A Heat resistant RNA depe 76.1 7.5 0.00026 36.8 8.1 74 194-278 28-105 (300)
277 2x8a_A Nuclear valosin-contain 75.9 0.56 1.9E-05 44.1 0.1 53 120-175 6-61 (274)
278 1f2t_A RAD50 ABC-ATPase; DNA d 75.9 1.9 6.4E-05 36.1 3.4 23 161-185 26-48 (149)
279 1w36_B RECB, exodeoxyribonucle 75.9 4.9 0.00017 46.2 7.9 60 160-219 18-81 (1180)
280 3cob_A Kinesin heavy chain-lik 75.8 1.5 5E-05 43.0 3.0 25 151-175 71-97 (369)
281 2ze6_A Isopentenyl transferase 75.8 1.7 5.9E-05 40.1 3.4 15 161-175 4-18 (253)
282 3u06_A Protein claret segregat 75.6 1.8 6.2E-05 43.0 3.7 25 151-175 130-156 (412)
283 1lvg_A Guanylate kinase, GMP k 75.6 2 6.8E-05 38.0 3.7 19 157-175 3-21 (198)
284 2rep_A Kinesin-like protein KI 75.5 1.8 6.3E-05 42.4 3.6 25 151-175 107-133 (376)
285 1vec_A ATP-dependent RNA helic 75.4 8.3 0.00028 33.8 7.8 70 375-448 72-152 (206)
286 3trf_A Shikimate kinase, SK; a 75.4 1.9 6.7E-05 37.3 3.5 18 158-175 5-22 (185)
287 1xp8_A RECA protein, recombina 75.3 2.5 8.4E-05 41.5 4.5 41 158-206 74-114 (366)
288 3bfn_A Kinesin-like protein KI 75.1 1.5 5.2E-05 43.1 2.9 23 153-175 92-116 (388)
289 2gza_A Type IV secretion syste 75.0 1.9 6.4E-05 42.3 3.6 20 155-174 172-191 (361)
290 1rj9_A FTSY, signal recognitio 74.7 3.1 0.00011 39.5 5.0 36 158-201 102-137 (304)
291 2cvh_A DNA repair and recombin 74.1 2.7 9.1E-05 37.5 4.2 37 157-204 19-55 (220)
292 3tau_A Guanylate kinase, GMP k 74.0 1.5 5.2E-05 39.1 2.4 19 157-175 7-25 (208)
293 3crm_A TRNA delta(2)-isopenten 73.6 1.8 6.1E-05 41.5 2.9 16 160-175 7-22 (323)
294 1sky_E F1-ATPase, F1-ATP synth 73.6 6 0.0002 40.0 6.8 22 154-175 147-168 (473)
295 4fcw_A Chaperone protein CLPB; 73.6 2.8 9.7E-05 39.8 4.4 16 160-175 49-64 (311)
296 1cr0_A DNA primase/helicase; R 73.5 3.3 0.00011 39.1 4.8 40 157-203 34-73 (296)
297 3b9q_A Chloroplast SRP recepto 73.3 3 0.0001 39.7 4.5 35 159-201 101-135 (302)
298 3lw7_A Adenylate kinase relate 73.2 1.5 5.2E-05 37.4 2.2 15 161-175 4-18 (179)
299 3iij_A Coilin-interacting nucl 73.1 1.5 5E-05 37.9 2.1 19 157-175 10-28 (180)
300 1qhx_A CPT, protein (chloramph 72.8 1.6 5.6E-05 37.5 2.3 18 158-175 3-20 (178)
301 1lsh_B Lipovitellin (LV-2); vi 72.7 0.73 2.5E-05 43.9 0.0 9 160-168 128-136 (319)
302 2qor_A Guanylate kinase; phosp 72.7 1.7 5.7E-05 38.6 2.4 20 156-175 10-29 (204)
303 2pt7_A CAG-ALFA; ATPase, prote 72.7 1.7 5.9E-05 42.0 2.6 19 156-174 169-187 (330)
304 3eph_A TRNA isopentenyltransfe 72.6 2.1 7.3E-05 42.3 3.3 21 161-182 5-25 (409)
305 3bgw_A DNAB-like replicative h 72.5 3.3 0.00011 41.8 4.8 51 157-216 196-246 (444)
306 3d3q_A TRNA delta(2)-isopenten 72.5 2.1 7E-05 41.4 3.1 22 160-182 9-30 (340)
307 1zp6_A Hypothetical protein AT 72.5 1.3 4.3E-05 38.8 1.5 20 156-175 7-26 (191)
308 3u4q_B ATP-dependent helicase/ 72.2 3.3 0.00011 47.6 5.3 56 348-406 319-375 (1166)
309 1um8_A ATP-dependent CLP prote 72.2 1.8 6.1E-05 42.7 2.7 18 158-175 72-89 (376)
310 1vma_A Cell division protein F 71.7 3.6 0.00012 39.2 4.6 34 160-201 106-139 (306)
311 1y63_A LMAJ004144AAA protein; 71.3 1.9 6.5E-05 37.5 2.4 19 157-175 9-27 (184)
312 2j41_A Guanylate kinase; GMP, 71.2 1.9 6.4E-05 38.1 2.4 19 157-175 5-23 (207)
313 3ney_A 55 kDa erythrocyte memb 71.1 2 6.8E-05 38.0 2.4 19 157-175 18-36 (197)
314 2db3_A ATP-dependent RNA helic 71.0 17 0.00057 36.4 9.7 71 374-448 129-209 (434)
315 1ex7_A Guanylate kinase; subst 70.8 2.2 7.4E-05 37.3 2.6 17 159-175 2-18 (186)
316 2ehv_A Hypothetical protein PH 70.8 4 0.00014 37.1 4.7 20 156-175 28-47 (251)
317 3pxg_A Negative regulator of g 70.8 4.7 0.00016 41.0 5.5 18 158-175 201-218 (468)
318 1qde_A EIF4A, translation init 70.4 6.3 0.00022 35.1 5.8 70 374-448 82-161 (224)
319 1hv8_A Putative ATP-dependent 70.2 20 0.00069 34.3 10.0 74 193-277 237-314 (367)
320 2yvu_A Probable adenylyl-sulfa 70.2 4.5 0.00015 35.0 4.6 18 158-175 13-30 (186)
321 1kag_A SKI, shikimate kinase I 69.9 2.3 7.9E-05 36.3 2.6 18 158-175 4-21 (173)
322 3kta_A Chromosome segregation 69.9 2.7 9.4E-05 36.2 3.1 24 160-185 28-51 (182)
323 1z6g_A Guanylate kinase; struc 69.7 2.4 8.1E-05 38.1 2.7 18 157-174 22-39 (218)
324 3d8b_A Fidgetin-like protein 1 69.6 1.9 6.6E-05 42.1 2.3 18 158-175 117-134 (357)
325 2og2_A Putative signal recogni 69.6 3.9 0.00013 39.9 4.4 34 160-201 159-192 (359)
326 1xjc_A MOBB protein homolog; s 69.6 5.6 0.00019 34.0 4.9 24 161-185 7-30 (169)
327 3tr0_A Guanylate kinase, GMP k 69.5 2.2 7.4E-05 37.6 2.4 19 157-175 6-24 (205)
328 1nks_A Adenylate kinase; therm 69.4 6.6 0.00023 33.9 5.6 15 161-175 4-18 (194)
329 1zu4_A FTSY; GTPase, signal re 69.3 4.3 0.00015 38.9 4.6 34 160-201 107-140 (320)
330 2i1q_A DNA repair and recombin 69.1 4.3 0.00015 38.9 4.6 65 151-216 86-165 (322)
331 3fht_A ATP-dependent RNA helic 68.9 13 0.00046 36.4 8.4 72 194-276 266-341 (412)
332 3a00_A Guanylate kinase, GMP k 68.3 2.6 8.7E-05 36.7 2.6 23 159-183 2-24 (186)
333 3qks_A DNA double-strand break 68.1 3.4 0.00012 36.6 3.4 23 161-185 26-48 (203)
334 3auy_A DNA double-strand break 68.1 3 0.0001 40.9 3.3 22 161-184 28-49 (371)
335 1ixz_A ATP-dependent metallopr 67.8 2.2 7.7E-05 39.2 2.2 16 160-175 51-66 (254)
336 1ly1_A Polynucleotide kinase; 67.7 2.4 8.1E-05 36.4 2.2 15 161-175 5-19 (181)
337 2d7d_A Uvrabc system protein B 67.7 44 0.0015 35.5 12.5 78 193-281 444-525 (661)
338 2ius_A DNA translocase FTSK; n 67.6 7.1 0.00024 40.0 6.0 26 158-184 167-192 (512)
339 3kb2_A SPBC2 prophage-derived 67.4 2.4 8.2E-05 36.1 2.2 16 160-175 3-18 (173)
340 3cmw_A Protein RECA, recombina 67.3 4.4 0.00015 47.8 4.8 45 158-210 1431-1475(1706)
341 4gp7_A Metallophosphoesterase; 67.3 2.2 7.5E-05 36.6 1.9 19 157-175 8-26 (171)
342 2v3c_C SRP54, signal recogniti 67.2 4.3 0.00015 40.8 4.2 34 160-201 101-134 (432)
343 3cf2_A TER ATPase, transitiona 67.1 2.5 8.4E-05 46.0 2.6 57 118-175 471-528 (806)
344 1qvr_A CLPB protein; coiled co 67.0 67 0.0023 35.3 14.2 24 159-183 192-215 (854)
345 1g41_A Heat shock protein HSLU 67.0 9.2 0.00032 38.4 6.6 18 158-175 50-67 (444)
346 1g8p_A Magnesium-chelatase 38 67.0 1.7 5.7E-05 42.2 1.2 18 158-175 45-62 (350)
347 3f9v_A Minichromosome maintena 66.9 2.9 9.9E-05 44.0 3.0 16 160-175 329-344 (595)
348 1gku_B Reverse gyrase, TOP-RG; 66.9 9.9 0.00034 43.0 7.6 72 375-448 100-181 (1054)
349 4eun_A Thermoresistant glucoki 66.3 2.8 9.5E-05 36.9 2.4 19 157-175 28-46 (200)
350 3pey_A ATP-dependent RNA helic 66.2 33 0.0011 33.2 10.6 76 193-279 242-321 (395)
351 1kht_A Adenylate kinase; phosp 66.1 2.7 9.4E-05 36.4 2.3 18 158-175 3-20 (192)
352 1q57_A DNA primase/helicase; d 65.9 7.9 0.00027 39.7 6.1 52 157-216 241-292 (503)
353 1ry6_A Internal kinesin; kines 65.8 3.8 0.00013 39.9 3.4 19 157-175 82-102 (360)
354 2zan_A Vacuolar protein sortin 65.6 2.6 8.8E-05 42.6 2.3 18 158-175 167-184 (444)
355 2yhs_A FTSY, cell division pro 65.6 5.1 0.00018 40.7 4.4 33 160-200 295-327 (503)
356 1znw_A Guanylate kinase, GMP k 65.5 2.9 0.0001 37.1 2.4 29 154-184 16-44 (207)
357 1s2m_A Putative ATP-dependent 65.5 35 0.0012 33.2 10.7 72 194-276 258-333 (400)
358 1knq_A Gluconate kinase; ALFA/ 65.4 2.5 8.5E-05 36.2 1.9 18 158-175 8-25 (175)
359 1wp9_A ATP-dependent RNA helic 65.2 28 0.00094 34.8 10.1 92 348-450 32-133 (494)
360 2iut_A DNA translocase FTSK; n 65.2 7.5 0.00026 40.3 5.6 26 159-185 215-240 (574)
361 3qf7_A RAD50; ABC-ATPase, ATPa 65.1 3.9 0.00013 40.1 3.4 23 160-184 25-47 (365)
362 4a74_A DNA repair and recombin 64.8 4.7 0.00016 36.1 3.8 19 157-175 24-42 (231)
363 1s96_A Guanylate kinase, GMP k 64.5 3.2 0.00011 37.4 2.4 20 156-175 14-33 (219)
364 3b6e_A Interferon-induced heli 63.6 26 0.0009 30.5 8.5 55 374-432 82-140 (216)
365 2v6i_A RNA helicase; membrane, 63.5 10 0.00034 38.1 6.2 54 194-252 171-224 (431)
366 1iy2_A ATP-dependent metallopr 63.4 3.1 0.0001 38.9 2.2 16 160-175 75-90 (278)
367 2r2a_A Uncharacterized protein 63.3 4.6 0.00016 35.6 3.2 15 161-175 8-22 (199)
368 1v5w_A DMC1, meiotic recombina 63.3 7.2 0.00025 37.7 4.9 53 151-205 110-167 (343)
369 3dkp_A Probable ATP-dependent 63.2 4.7 0.00016 36.6 3.4 73 374-449 98-182 (245)
370 3cm0_A Adenylate kinase; ATP-b 63.0 2.5 8.5E-05 36.6 1.4 18 158-175 4-21 (186)
371 1q0u_A Bstdead; DEAD protein, 62.8 7 0.00024 34.8 4.5 70 375-448 73-156 (219)
372 1c4o_A DNA nucleotide excision 62.7 26 0.0009 37.2 9.6 76 194-280 439-518 (664)
373 3t61_A Gluconokinase; PSI-biol 62.6 3.3 0.00011 36.4 2.2 17 159-175 19-35 (202)
374 3nwj_A ATSK2; P loop, shikimat 62.5 4.1 0.00014 37.5 2.8 19 157-175 47-65 (250)
375 1in4_A RUVB, holliday junction 62.2 3.5 0.00012 39.8 2.5 17 159-175 52-68 (334)
376 2c95_A Adenylate kinase 1; tra 61.9 4.3 0.00015 35.3 2.8 19 157-175 8-26 (196)
377 3c8u_A Fructokinase; YP_612366 61.8 4.7 0.00016 35.7 3.1 26 158-185 22-47 (208)
378 2rhm_A Putative kinase; P-loop 61.7 3.5 0.00012 35.8 2.2 17 159-175 6-22 (193)
379 1yks_A Genome polyprotein [con 61.5 9.2 0.00031 38.5 5.5 69 194-274 177-245 (440)
380 3pxi_A Negative regulator of g 61.5 11 0.00036 41.1 6.3 16 160-175 523-538 (758)
381 2bdt_A BH3686; alpha-beta prot 61.4 3.6 0.00012 35.7 2.2 16 160-175 4-19 (189)
382 3uie_A Adenylyl-sulfate kinase 61.4 3.3 0.00011 36.5 1.9 19 157-175 24-42 (200)
383 1via_A Shikimate kinase; struc 61.3 4.1 0.00014 34.9 2.5 16 160-175 6-21 (175)
384 1gvn_B Zeta; postsegregational 61.0 3.5 0.00012 38.9 2.1 16 160-175 35-50 (287)
385 1tev_A UMP-CMP kinase; ploop, 60.4 3.9 0.00013 35.5 2.2 17 159-175 4-20 (196)
386 2wv9_A Flavivirin protease NS2 60.4 11 0.00039 40.1 6.2 69 194-274 410-478 (673)
387 2bwj_A Adenylate kinase 5; pho 60.3 4.2 0.00014 35.5 2.4 19 157-175 11-29 (199)
388 3lnc_A Guanylate kinase, GMP k 60.3 2.1 7.3E-05 38.7 0.5 20 156-175 25-44 (231)
389 3k1j_A LON protease, ATP-depen 60.3 5.7 0.00019 41.9 3.8 22 154-175 56-77 (604)
390 4h1g_A Maltose binding protein 60.2 5.4 0.00018 43.0 3.7 25 151-175 454-480 (715)
391 2v9p_A Replication protein E1; 60.1 5.4 0.00019 37.8 3.3 26 157-184 125-150 (305)
392 3a4m_A L-seryl-tRNA(SEC) kinas 60.1 9.3 0.00032 35.2 4.9 16 160-175 6-21 (260)
393 2iyv_A Shikimate kinase, SK; t 60.1 4.6 0.00016 34.8 2.6 17 159-175 3-19 (184)
394 1m7g_A Adenylylsulfate kinase; 59.9 4.8 0.00016 35.7 2.8 30 145-175 13-42 (211)
395 1lsh_B Lipovitellin (LV-2); vi 59.8 1.9 6.4E-05 41.1 0.0 11 3-13 2-12 (319)
396 1j8m_F SRP54, signal recogniti 59.8 8.4 0.00029 36.4 4.6 34 160-201 100-133 (297)
397 2i3b_A HCR-ntpase, human cance 59.6 7.5 0.00026 33.9 3.9 41 267-310 103-145 (189)
398 1zuh_A Shikimate kinase; alpha 59.5 4.1 0.00014 34.5 2.2 17 159-175 8-24 (168)
399 2ce7_A Cell division protein F 59.5 3.7 0.00013 41.7 2.1 17 159-175 50-66 (476)
400 2j0s_A ATP-dependent RNA helic 59.4 30 0.001 33.9 9.0 73 194-277 276-352 (410)
401 3tbk_A RIG-I helicase domain; 59.4 12 0.00042 38.5 6.2 73 374-450 52-135 (555)
402 2xau_A PRE-mRNA-splicing facto 59.3 19 0.00065 39.1 7.8 76 194-275 303-393 (773)
403 1rz3_A Hypothetical protein rb 59.2 9.8 0.00033 33.4 4.7 16 160-175 24-39 (201)
404 3bs4_A Uncharacterized protein 59.1 10 0.00036 34.9 4.9 52 157-217 20-71 (260)
405 3pxi_A Negative regulator of g 59.1 12 0.0004 40.7 6.2 18 158-175 201-218 (758)
406 1ak2_A Adenylate kinase isoenz 59.0 6.5 0.00022 35.5 3.5 18 158-175 16-33 (233)
407 1aky_A Adenylate kinase; ATP:A 59.0 4.5 0.00015 36.2 2.4 18 158-175 4-21 (220)
408 2oca_A DAR protein, ATP-depend 58.7 64 0.0022 32.7 11.6 76 194-279 347-426 (510)
409 3cmw_A Protein RECA, recombina 58.5 11 0.00039 44.4 6.1 40 157-204 33-72 (1706)
410 3p32_A Probable GTPase RV1496/ 58.5 1E+02 0.0035 29.6 12.3 23 160-183 81-103 (355)
411 1e6c_A Shikimate kinase; phosp 58.5 4.4 0.00015 34.4 2.2 16 160-175 4-19 (173)
412 3fb4_A Adenylate kinase; psych 58.4 4.4 0.00015 36.0 2.2 15 161-175 3-17 (216)
413 1ye8_A Protein THEP1, hypothet 58.3 6.9 0.00023 33.8 3.4 22 160-183 2-23 (178)
414 1zd8_A GTP:AMP phosphotransfer 58.1 4.3 0.00015 36.5 2.1 18 158-175 7-24 (227)
415 2qt1_A Nicotinamide riboside k 58.1 2.3 8E-05 37.6 0.3 19 157-175 20-38 (207)
416 1zak_A Adenylate kinase; ATP:A 57.9 5.1 0.00017 35.8 2.6 18 158-175 5-22 (222)
417 2v54_A DTMP kinase, thymidylat 57.9 4.8 0.00017 35.3 2.4 19 157-175 3-21 (204)
418 1c9k_A COBU, adenosylcobinamid 57.6 6.3 0.00021 34.1 3.0 44 161-216 2-45 (180)
419 1qf9_A UMP/CMP kinase, protein 57.4 4.6 0.00016 34.9 2.2 16 160-175 8-23 (194)
420 1htw_A HI0065; nucleotide-bind 57.4 9.8 0.00033 32.0 4.1 27 156-184 31-57 (158)
421 3ice_A Transcription terminati 57.3 25 0.00084 34.6 7.3 28 148-175 161-191 (422)
422 3asz_A Uridine kinase; cytidin 57.3 6.5 0.00022 34.7 3.2 25 158-184 6-30 (211)
423 3dl0_A Adenylate kinase; phosp 57.2 4.7 0.00016 35.9 2.2 16 160-175 2-17 (216)
424 3cmu_A Protein RECA, recombina 57.1 7.9 0.00027 46.4 4.5 47 156-211 1079-1125(2050)
425 3m6a_A ATP-dependent protease 57.1 4.5 0.00015 42.1 2.3 19 157-175 107-125 (543)
426 3tqf_A HPR(Ser) kinase; transf 56.9 7.4 0.00025 33.4 3.2 19 157-175 15-33 (181)
427 4akg_A Glutathione S-transfera 56.7 4.4 0.00015 50.2 2.4 20 156-175 1265-1284(2695)
428 2cdn_A Adenylate kinase; phosp 56.6 4.9 0.00017 35.3 2.2 17 159-175 21-37 (201)
429 4a2q_A RIG-I, retinoic acid in 56.1 44 0.0015 36.4 10.2 72 374-449 296-378 (797)
430 2jlq_A Serine protease subunit 55.9 15 0.00052 36.9 6.1 69 194-274 188-256 (451)
431 1fuu_A Yeast initiation factor 55.9 30 0.001 33.5 8.2 70 374-448 89-168 (394)
432 2pez_A Bifunctional 3'-phospho 55.9 4.7 0.00016 34.6 1.9 19 157-175 4-22 (179)
433 3foj_A Uncharacterized protein 55.8 9.3 0.00032 29.1 3.4 36 374-409 56-91 (100)
434 1cke_A CK, MSSA, protein (cyti 55.8 5.1 0.00017 35.9 2.2 17 159-175 6-22 (227)
435 3tqc_A Pantothenate kinase; bi 55.7 20 0.00068 34.2 6.4 23 161-185 95-117 (321)
436 3gk5_A Uncharacterized rhodane 55.7 9.2 0.00031 29.7 3.4 36 374-409 55-90 (108)
437 3dmn_A Putative DNA helicase; 55.7 93 0.0032 26.2 10.9 82 349-452 43-124 (174)
438 2jaq_A Deoxyguanosine kinase; 55.7 5.2 0.00018 35.0 2.2 15 161-175 3-17 (205)
439 3eme_A Rhodanese-like domain p 55.6 9.5 0.00033 29.2 3.5 36 374-409 56-91 (103)
440 1byi_A Dethiobiotin synthase; 55.5 14 0.00046 32.9 5.1 33 162-202 6-38 (224)
441 3tif_A Uncharacterized ABC tra 55.5 4.8 0.00016 36.6 2.0 23 157-181 30-52 (235)
442 3fmo_B ATP-dependent RNA helic 55.5 17 0.00058 34.2 6.0 69 375-450 163-243 (300)
443 2pt5_A Shikimate kinase, SK; a 55.5 5.4 0.00018 33.7 2.2 16 160-175 2-17 (168)
444 3iwh_A Rhodanese-like domain p 55.4 9.8 0.00034 29.3 3.5 35 374-408 56-90 (103)
445 1ukz_A Uridylate kinase; trans 55.3 5.3 0.00018 35.1 2.2 16 160-175 17-32 (203)
446 2z0h_A DTMP kinase, thymidylat 55.2 14 0.00046 32.0 4.9 15 161-175 3-17 (197)
447 1nij_A Hypothetical protein YJ 55.1 7.9 0.00027 37.0 3.6 14 161-174 7-20 (318)
448 3zq6_A Putative arsenical pump 55.0 12 0.00041 35.8 4.9 33 161-201 17-49 (324)
449 4a2p_A RIG-I, retinoic acid in 55.0 40 0.0014 34.5 9.3 72 374-449 55-137 (556)
450 2if2_A Dephospho-COA kinase; a 54.7 5.4 0.00018 35.0 2.1 16 160-175 3-18 (204)
451 2wwf_A Thymidilate kinase, put 54.5 5.7 0.0002 35.0 2.3 19 157-175 9-27 (212)
452 1qvr_A CLPB protein; coiled co 54.5 8.6 0.00029 42.5 4.2 16 160-175 590-605 (854)
453 1jjv_A Dephospho-COA kinase; P 54.4 5.6 0.00019 35.0 2.2 15 161-175 5-19 (206)
454 1pzn_A RAD51, DNA repair and r 54.3 8.6 0.00029 37.3 3.7 17 159-175 132-148 (349)
455 1np6_A Molybdopterin-guanine d 54.0 15 0.00053 31.4 4.9 22 160-182 8-29 (174)
456 3sr0_A Adenylate kinase; phosp 54.0 12 0.00042 33.0 4.4 16 161-176 3-18 (206)
457 2plr_A DTMP kinase, probable t 53.8 5.2 0.00018 35.3 1.9 18 158-175 4-21 (213)
458 4anj_A Unconventional myosin-V 53.6 14 0.00049 41.3 5.7 96 88-185 65-170 (1052)
459 2vli_A Antibiotic resistance p 53.4 4.8 0.00016 34.5 1.6 18 158-175 5-22 (183)
460 3qkt_A DNA double-strand break 53.2 8.3 0.00028 37.2 3.4 23 161-185 26-48 (339)
461 1tf7_A KAIC; homohexamer, hexa 53.1 11 0.00039 38.8 4.6 41 157-205 280-320 (525)
462 1nn5_A Similar to deoxythymidy 53.1 6.3 0.00022 34.8 2.4 19 157-175 8-26 (215)
463 2cbz_A Multidrug resistance-as 53.1 5.6 0.00019 36.2 2.0 18 157-174 30-47 (237)
464 3be4_A Adenylate kinase; malar 52.7 6.4 0.00022 35.1 2.3 18 158-175 5-22 (217)
465 2pbr_A DTMP kinase, thymidylat 52.6 6.2 0.00021 34.1 2.2 15 161-175 3-17 (195)
466 1sgw_A Putative ABC transporte 52.6 6.3 0.00021 35.2 2.2 23 157-181 34-56 (214)
467 1uf9_A TT1252 protein; P-loop, 52.4 6.2 0.00021 34.5 2.2 16 160-175 10-25 (203)
468 1wv9_A Rhodanese homolog TT165 52.2 12 0.00043 27.9 3.6 35 375-409 54-88 (94)
469 3tlx_A Adenylate kinase 2; str 52.2 6.5 0.00022 35.9 2.3 18 158-175 29-46 (243)
470 1e4v_A Adenylate kinase; trans 52.1 6.3 0.00021 35.0 2.2 16 160-175 2-17 (214)
471 2vhj_A Ntpase P4, P4; non- hyd 52.0 7.5 0.00026 37.1 2.7 19 157-175 122-140 (331)
472 2yjt_D ATP-dependent RNA helic 57.1 3.1 0.00011 35.6 0.0 73 194-277 30-106 (170)
473 3ug7_A Arsenical pump-driving 51.7 14 0.00049 35.7 4.8 33 161-201 29-61 (349)
474 4akg_A Glutathione S-transfera 51.6 17 0.00059 45.2 6.3 45 130-175 892-940 (2695)
475 2woo_A ATPase GET3; tail-ancho 51.6 14 0.00048 35.4 4.7 33 161-201 22-54 (329)
476 1z5z_A Helicase of the SNF2/RA 51.3 81 0.0028 29.0 9.8 96 166-278 92-192 (271)
477 2z0m_A 337AA long hypothetical 51.3 32 0.0011 32.4 7.4 68 376-448 58-135 (337)
478 3umf_A Adenylate kinase; rossm 51.2 10 0.00035 33.9 3.4 19 158-176 29-47 (217)
479 3lda_A DNA repair protein RAD5 51.2 15 0.00052 36.3 5.0 45 158-204 178-222 (400)
480 2bbw_A Adenylate kinase 4, AK4 51.0 6.7 0.00023 35.8 2.2 18 158-175 27-44 (246)
481 2dhr_A FTSH; AAA+ protein, hex 50.9 6.3 0.00021 40.3 2.2 16 160-175 66-81 (499)
482 4e22_A Cytidylate kinase; P-lo 50.7 7.2 0.00024 35.8 2.4 19 157-175 26-44 (252)
483 2f1r_A Molybdopterin-guanine d 50.5 6.9 0.00024 33.5 2.1 16 160-175 4-19 (171)
484 2xb4_A Adenylate kinase; ATP-b 50.4 7 0.00024 35.0 2.2 15 161-175 3-17 (223)
485 2ff7_A Alpha-hemolysin translo 50.2 6.4 0.00022 36.0 1.9 23 157-181 34-56 (247)
486 3gfo_A Cobalt import ATP-bindi 50.1 6.3 0.00022 36.8 1.9 18 157-174 33-50 (275)
487 1ihu_A Arsenical pump-driving 50.0 15 0.00051 38.5 5.0 34 160-201 10-43 (589)
488 2ghi_A Transport protein; mult 50.0 6.6 0.00023 36.3 2.0 18 157-174 45-62 (260)
489 2pze_A Cystic fibrosis transme 49.9 6.6 0.00022 35.5 1.9 23 157-181 33-55 (229)
490 1g3q_A MIND ATPase, cell divis 49.9 15 0.00052 32.9 4.5 32 162-201 7-38 (237)
491 2p5t_B PEZT; postsegregational 49.8 5.3 0.00018 36.7 1.3 16 160-175 34-49 (253)
492 1hyq_A MIND, cell division inh 49.7 17 0.00059 33.2 4.9 33 161-201 6-38 (263)
493 2pcj_A ABC transporter, lipopr 49.6 6.6 0.00023 35.3 1.9 23 157-181 29-51 (224)
494 1tf5_A Preprotein translocase 49.3 38 0.0013 36.7 7.9 76 194-280 432-517 (844)
495 3nh6_A ATP-binding cassette SU 48.9 5.5 0.00019 37.8 1.3 18 157-174 79-96 (306)
496 1yrb_A ATP(GTP)binding protein 48.9 16 0.00055 33.3 4.5 32 161-201 17-48 (262)
497 3vkg_A Dynein heavy chain, cyt 48.9 25 0.00085 44.4 7.2 53 130-185 875-931 (3245)
498 3bfv_A CAPA1, CAPB2, membrane 48.8 33 0.0011 31.7 6.7 32 161-200 85-117 (271)
499 2ph1_A Nucleotide-binding prot 48.8 16 0.00054 33.5 4.5 32 162-201 23-54 (262)
500 4g1u_C Hemin import ATP-bindin 48.6 7 0.00024 36.3 1.9 23 157-181 36-58 (266)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.1e-60 Score=490.14 Aligned_cols=372 Identities=42% Similarity=0.679 Sum_probs=336.6
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008443 114 VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 114 ~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~ 193 (565)
...|.++.+|+++++++.+++.+.+.||..|+++|+++++.++.|++++++++||+|||++|+++++..++.........
T Consensus 49 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 128 (434)
T 2db3_A 49 SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELG 128 (434)
T ss_dssp SSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTT
T ss_pred CCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999988764333345
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
++++|||+|+++|+.|+.+.++++.... .+.+..++||.....+...+..+++|+|+||++|.+++......+.++++|
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 7899999999999999999999988654 578888999999888887888899999999999999999888889999999
Q ss_pred EecchhhhhhCCCHHHHHHHHHhC--CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch
Q 008443 274 ILDEADRMLDMGFEPQIREVMQNL--PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE 351 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~--~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (565)
|+||||++.+.+|...+..++..+ ++..|++++|||++..+..++..++.++..+.+........++.+.+..+....
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 287 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA 287 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGG
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHH
Confidence 999999999999999999999885 567899999999999999999999999988888776666778888888888888
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEec
Q 008443 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 ~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
+...+.+.+.... .++||||+++..|+.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||
T Consensus 288 k~~~l~~~l~~~~----------~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 288 KRSKLIEILSEQA----------DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp HHHHHHHHHHHCC----------TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred HHHHHHHHHHhCC----------CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 8887777665421 139999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEecc-ccHHHHHHHHHHHhhh
Q 008443 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD-RDMLLVAQIKKAIVDA 496 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~-~d~~~~~~l~~~~~~~ 496 (565)
+++++|+|+|+|++||++|+|.+..+|+||+||+||.|+.|.+++|+++ .+......+.+.+...
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~ 423 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGS 423 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHT
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999994 5777778887777543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-56 Score=463.97 Aligned_cols=375 Identities=45% Similarity=0.747 Sum_probs=327.7
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCC----
Q 008443 114 VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---- 189 (565)
Q Consensus 114 ~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~---- 189 (565)
...|.++.+|+++++++.+++.|...||..|+++|+++++.++.++++++++|||+|||++|+++++..+......
T Consensus 8 ~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 8 NNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp TTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 3568889999999999999999999999999999999999999999999999999999999999999887764311
Q ss_pred ---------CCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHH
Q 008443 190 ---------GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 260 (565)
Q Consensus 190 ---------~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~ 260 (565)
....++++|||+|+++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||++|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 88 AMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 166 (417)
T ss_dssp HHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHH
T ss_pred ccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHH
Confidence 11234789999999999999999999988654 67889999999888887788888999999999999999
Q ss_pred HcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC--CC--CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCC
Q 008443 261 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD--KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSP 336 (565)
Q Consensus 261 ~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (565)
....+.+.++++|||||+|++.+.+|...+..++... ++ ..|++++|||++..+..+...++.++..+........
T Consensus 167 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2i4i_A 167 ERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST 246 (417)
T ss_dssp HTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----C
T ss_pred HcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 8888888999999999999999999999999998753 32 5789999999999999899999988888777666666
Q ss_pred CCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHH
Q 008443 337 TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESA 416 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 416 (565)
...+.+.+.......+...+.+.+... ....++||||+++.+++.+++.|...++.+..+||++++.+|..+
T Consensus 247 ~~~i~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 247 SENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp CSSEEEEEEECCGGGHHHHHHHHHHTC--------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred ccCceEEEEEeccHhHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 667777777777777776666655431 234579999999999999999999999999999999999999999
Q ss_pred HHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhhh
Q 008443 417 LRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 417 ~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++++++.|...+..+.+.+...
T Consensus 319 ~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 398 (417)
T 2i4i_A 319 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 398 (417)
T ss_dssp HHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred HHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877654
Q ss_pred c
Q 008443 497 E 497 (565)
Q Consensus 497 ~ 497 (565)
.
T Consensus 399 ~ 399 (417)
T 2i4i_A 399 K 399 (417)
T ss_dssp T
T ss_pred c
Confidence 3
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.4e-56 Score=457.22 Aligned_cols=363 Identities=34% Similarity=0.571 Sum_probs=323.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeE
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (565)
.+..+|+++++++.+++.+...|+..|+++|+++++.++.++++++.+|||+|||++|+++++..+... ..++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~ 108 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQA 108 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCCE
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCceE
Confidence 445789999999999999999999999999999999999999999999999999999999888765422 246789
Q ss_pred EEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecc
Q 008443 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 198 Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE 277 (565)
|||+|+++|+.|+.+.++++.... ++.+..+.|+.....+...+..+++|+|+||++|.+.+......+.++++|||||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 999999999999999999987654 6788889999988888777777899999999999999988888889999999999
Q ss_pred hhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch-HHHHH
Q 008443 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRL 356 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 356 (565)
+|++.+.++...+..++..+++..|++++|||++.....+...++.++..+...........+.+.+....... +...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 99999999999999999999989999999999999988888888888887776665556667777777666544 55555
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccccc
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
...+... ...++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 268 ~~~~~~~---------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 268 CDLYDTL---------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp HHHHHHH---------TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHHHHhc---------CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 5544432 1236999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
|+|+|++++||++|+|++...|+||+||+||.|+.|.+++++++.|...++.+++.+..
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998877654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1e-53 Score=440.47 Aligned_cols=360 Identities=33% Similarity=0.548 Sum_probs=315.4
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008443 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~L 198 (565)
...+|+++++++.+++.|...|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+... ..+.++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 93 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQAL 93 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccEE
Confidence 45689999999999999999999999999999999999999999999999999999999988775432 2466899
Q ss_pred EEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecch
Q 008443 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 278 (565)
|++|+++|+.|+.+.+++++... ++.+..+.|+.........+...++|+|+||++|.+.+......+.++++|||||+
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999988664 57888889998887776677788999999999999998887788899999999999
Q ss_pred hhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHH
Q 008443 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (565)
|++.+.++...+..++..+++..|++++|||++..+......++..+..+..... .....+.+.+.......+...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHH
Confidence 9998877888889999988888999999999999988888888887776654432 334456666666666666665555
Q ss_pred HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCC
Q 008443 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+.. ...+++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 252 ~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 252 LFSK---------LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp HHHH---------SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred HHhh---------cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 4433 1234799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
|+|++++||++|+|.+...|+||+||+||.|+.|.|+++++..|...++++++.+.
T Consensus 323 dip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 323 DIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998888887664
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-54 Score=446.73 Aligned_cols=364 Identities=35% Similarity=0.573 Sum_probs=306.0
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008443 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 117 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~ 196 (565)
+....+|+++++++.+++.+...|+..|+++|+++++.++.++++++.+|||+|||++|++++++.+... ..+.+
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 110 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKATQ 110 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSCC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCcee
Confidence 4556789999999999999999999999999999999999999999999999999999999988876542 24678
Q ss_pred EEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEe
Q 008443 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 197 ~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIi 275 (565)
+||++|+++|+.|+.+.+++++... +..+..+.|+.........+. .+++|+|+||++|.+.+......+.++++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 9999999999999999999988664 577888888887776655554 67899999999999999988888899999999
Q ss_pred cchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch-HHH
Q 008443 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (565)
||+|++.+.++...+..++..++++.|++++|||++.........++.++..+...........+.+.+....... +..
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9999999999999999999999999999999999999999999999998888777666666666666666655444 444
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+.. ...+++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 270 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 270 TLCDLYET---------LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp HHHHHHHS---------SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHHHHh---------CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 44444322 123469999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++++++.+...++.+++.+..
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTC
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999988888777643
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.9e-53 Score=433.50 Aligned_cols=359 Identities=31% Similarity=0.541 Sum_probs=311.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.+|+++++++.+++.|...|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999888765432 236689999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
+|+++|+.|+.+.++++....+++.+..+.|+.........+. +.++|+|+||++|...+......+.++++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 9999999999999999987665788999999988776655554 457999999999999988887888999999999999
Q ss_pred hhhhC-CCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcC-CCCCceEEEEEEeccchHHHHHH
Q 008443 280 RMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLL 357 (565)
Q Consensus 280 ~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 357 (565)
++.+. ++...+..++...++..|++++|||++.........++..+..+...... .....+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67778888888888889999999999998888888898888877665433 23345666666677777776666
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccC
Q 008443 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (565)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 437 (565)
..+... ..+++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 243 ~~l~~~---------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 313 (391)
T 1xti_A 243 DLLDVL---------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313 (391)
T ss_dssp HHHHHS---------CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSC
T ss_pred HHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcC
Confidence 655432 33479999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHH
Q 008443 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAI 493 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-d~~~~~~l~~~~ 493 (565)
+|+|++++||++++|++...|+||+||+||.|+.|.+++++.+. +...++.+++.+
T Consensus 314 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp BCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876 445566666544
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-52 Score=434.68 Aligned_cols=361 Identities=30% Similarity=0.479 Sum_probs=308.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 008443 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 117 p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~ 194 (565)
.....+|+++++++.+++.+.+.|+..|+++|.++++.++.+ +++++++|||+|||++|+++++..+... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 456789999999999999999999999999999999999987 8999999999999999999998876543 246
Q ss_pred CeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc-CCCCCCCceEE
Q 008443 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFV 273 (565)
Q Consensus 195 ~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~i 273 (565)
+++|||+|+++|+.|+.+.++++....+...+....++...... ....++|+|+||++|.+.+.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 68999999999999999999999876666788888777654321 234579999999999988865 45677899999
Q ss_pred Eecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccc-h
Q 008443 274 ILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSEN-E 351 (565)
Q Consensus 274 IiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 351 (565)
||||+|++.+ .++...+..+...++++.|++++|||++.....+...++.++..+...........+.+.+...... .
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999986 6788888999999999999999999999999999999999888887776666666666666665543 3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEec
Q 008443 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (565)
Q Consensus 352 ~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 431 (565)
+...+...+... ..+++||||+++.+|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||
T Consensus 253 ~~~~l~~~~~~~---------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 253 KFQALCNLYGAI---------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp HHHHHHHHHHHH---------SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHhhc---------CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 444444444321 12369999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCccEEEEcCCCC------CccchhhhhcccccCCCceeEEEEecccc-HHHHHHHHHHHh
Q 008443 432 DVASRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAIV 494 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d-~~~~~~l~~~~~ 494 (565)
+++++|+|+|++++||++|+|. +...|+||+||+||.|+.|.++++++..+ ...++.+++.+.
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 9999999999999999999994 56799999999999999999999998764 677777776654
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-52 Score=426.46 Aligned_cols=354 Identities=39% Similarity=0.608 Sum_probs=310.9
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~L 198 (565)
..+|+++++++.+.+.|.+.|+..|+++|.++++.++++ +++++.+|||+|||++|+++++..+... .+.++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 356999999999999999999999999999999999988 6899999999999999988887765432 467899
Q ss_pred EEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecch
Q 008443 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 278 (565)
|++|+++|+.|+.+.++++++.. .+.+..+.|+.........+. +++|+|+||++|.+.+......+.++++|||||+
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 99999999999999999998764 577888888888766655554 6899999999999999888888899999999999
Q ss_pred hhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHH
Q 008443 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 279 H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (565)
|++.+.++...+..++..+++..+++++|||++.........++.++..+.... ...+.+.+.......+...+..
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHH
Confidence 999999999999999999988999999999999998888888887765554332 2245556666667777766665
Q ss_pred HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCC
Q 008443 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+. ....++||||+++.+++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 233 ~l~----------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 233 LLK----------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp HHC----------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHh----------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 553 2234699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 439 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 439 dip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
|+|++++||++++|.++..|+||+||+||.|++|.+++++++.|...++.+++.+..
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998877644
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.3e-52 Score=429.56 Aligned_cols=357 Identities=31% Similarity=0.516 Sum_probs=302.4
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008443 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~ 196 (565)
...+|+++++++.+++.+...|+..|+++|.++++.++.+ +++++++|||+|||++|+++++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999988 8999999999999999999888876542 24678
Q ss_pred EEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
+|||+|+++|+.|+.+.++++.... .+.+....++..... ...+++|+|+||++|.+.+......+.++++||||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 9999999999999999999987654 566777766643221 22468999999999999998888889999999999
Q ss_pred chhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch-HHH
Q 008443 277 EADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (565)
Q Consensus 277 E~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (565)
|||++.+ .++...+..+...++++.|++++|||++..+......++..+..+...........+...+....... +..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999987 67888889999999989999999999999999999989888887776666655666666666654433 332
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+.. ...+++||||+++.+|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 233 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 233 VLTELYGL---------MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp HHHHHHTT---------TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred HHHHHHHh---------ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 22222211 233579999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCC------CccchhhhhcccccCCCceeEEEEecccc-HHHHHHHHHHHh
Q 008443 435 SRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAIV 494 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d-~~~~~~l~~~~~ 494 (565)
++|+|+|++++||++|+|. ++..|+||+||+||.|+.|.+++++...+ ...+..+++.+.
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999998 99999999999999999999999998654 455566665544
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.6e-54 Score=440.17 Aligned_cols=363 Identities=34% Similarity=0.558 Sum_probs=186.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 008443 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 116 ~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~ 195 (565)
...+...|+++++++.+++.+...|+.+|+++|+++++.++.++++++.+|||+|||++|+++++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 34556789999999999999999999999999999999999999999999999999999999988876542 2467
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEe
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIi 275 (565)
++||++|+++|+.|+.+.+++++... ++.+..+.|+....+....+. +++|+|+||++|.+.+......+.++++||+
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 89999999999999999999987654 578888899888766555444 5899999999999999888788889999999
Q ss_pred cchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccch-HHH
Q 008443 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (565)
||+|++.+.++...+..++..+++..|++++|||++.........++..+..+...........+.+.+....... +..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 9999999999999999999999999999999999999988888888888887776654444444444433333322 333
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecccc
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 434 (565)
.+...+... ..+++||||+++.+++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++
T Consensus 249 ~l~~~~~~~---------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 249 CLTDLYDSI---------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC---------CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 333332221 22369999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 435 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 435 ~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
++|+|+|++++||++++|.+...|+||+||+||.|++|.+++++.+.|...+..+++.+.
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999888887766543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.8e-52 Score=446.93 Aligned_cols=369 Identities=29% Similarity=0.451 Sum_probs=302.6
Q ss_pred CCCcccCC----CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 008443 120 IESFTDMC----LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (565)
Q Consensus 120 ~~~~~~~~----l~~~l~~~l~~~~~~~~~~~Q~~al~~l~--~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~ 193 (565)
..+|+++. |++.+++.+...|+..|+++|.++++.++ .++++|+.+|||+|||++|++|+++.+..... ....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccC
Confidence 34455543 99999999999999999999999999999 67899999999999999999999998876532 1224
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhc---CCCceEEEEECCCcHHHHHHHH-hCCCeEEEECchHHHHHHHcC-CCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLS 268 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~-~~~~~ 268 (565)
++++|||+|+++|+.|+.+.+++++.. .....+..+.|+.........+ ..+++|+|+||++|.+++... ...+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 678999999999999999999998742 2346677888888776665555 447999999999998887654 34677
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCC-------CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcC----CCC
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLP-------DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVS----SPT 337 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 337 (565)
.+++|||||||++.+++|...+..++..++ +..|++++|||++..+..++..++..+..+.+.... ...
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 899999999999999999999888876652 367899999999999998888888887666543321 222
Q ss_pred CceEEEEEEecc-chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC---CCceEEecCCCChhhH
Q 008443 338 ANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDR 413 (565)
Q Consensus 338 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r 413 (565)
..+.+....... ..+...++..+...... ..+..++||||+++..|+.+++.|... ++.+..+||++++.+|
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKE----RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHH----TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhh----cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 344444444332 23333444444433322 123447999999999999999999987 8999999999999999
Q ss_pred HHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008443 414 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 414 ~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~ 493 (565)
..+++.|++|+++|||||+++++|||+|+|++||++|+|.++..|+||+||+||.|+.|.+++++.+.|...++.+++..
T Consensus 331 ~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 331 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887764
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.1e-51 Score=441.82 Aligned_cols=361 Identities=30% Similarity=0.459 Sum_probs=297.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~--~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
+++.+++.+...|+..|+++|.++++.++ .++++|++||||+|||++|+++++..+...... ...++++|||+|+++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999988765321 223568999999999
Q ss_pred hHHHHHHHHHHHHhc---CCCceEEEEECCCcHHHHHHHH-hCCCeEEEECchHHHHHHHcC-CCCCCCceEEEecchhh
Q 008443 206 LAQQIEKEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADR 280 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~iIiDE~H~ 280 (565)
|+.|+.+.+++++.. .....+..+.|+.........+ ..+++|+|+||++|.+++... ...++++++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 2345677788888766655544 457999999999998887654 23577899999999999
Q ss_pred hhhCCCHHHHHHHHHhC-------CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcC----CCCCceEEEEEEecc
Q 008443 281 MLDMGFEPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVS----SPTANVIQILEKVSE 349 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 349 (565)
+.+++|...+..++..+ .+..|++++|||++..+..++..++..+..+...... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999988887664 2367899999999999888888888877666543222 222334444444332
Q ss_pred -chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC---CCceEEecCCCChhhHHHHHHhhhcCCe
Q 008443 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGST 425 (565)
Q Consensus 350 -~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 425 (565)
..+...++..+...... .....++||||+++..|+.+++.|... ++.+..+||++++.+|..+++.|++|++
T Consensus 318 ~~~~~~~~~~~l~~~~~~----~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 393 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKE----RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 393 (563)
T ss_dssp TTHHHHHHHHHHHHHHHH----TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred hHhhHHHHHHHHHHHHhh----cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC
Confidence 23333344444333322 123447999999999999999999987 8999999999999999999999999999
Q ss_pred eEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008443 426 NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 426 ~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~ 493 (565)
+|||||+++++|||+|+|++||++|+|.++..|+||+||+||.|+.|.+++++.+.|...++.+++..
T Consensus 394 ~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 394 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998887664
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.6e-53 Score=447.29 Aligned_cols=359 Identities=30% Similarity=0.488 Sum_probs=177.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~ 195 (565)
.+..+|.++++++.+++.+..+||..|+++|.++++.++.+ +++|++||||+|||++|+++++..+... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 45678999999999999999999999999999999999987 8899999999999999999988765442 2356
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc-CCCCCCCceEEE
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVI 274 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~iI 274 (565)
++|||+|+++|+.|+.+.++.+......+.+....++...... .....+|+|+||++|.+++.. ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 8999999999999999999999876666777777776543221 134578999999999998865 456778999999
Q ss_pred ecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEecc-chH
Q 008443 275 LDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEK 352 (565)
Q Consensus 275 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 352 (565)
|||+|++.+ .++...+..++..++.+.|++++|||++.....+...++.++..+...........+.+.+..+.. ..+
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH
Confidence 999999987 578888889999999999999999999999999999999888877776555444445554444433 233
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
...+...+... ..+++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+
T Consensus 321 ~~~l~~~~~~~---------~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 321 FQALCNLYGAI---------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhc---------cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 33333333221 123699999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCccEEEEcCCCC------CccchhhhhcccccCCCceeEEEEecccc-HHHHHHHHHHH
Q 008443 433 VASRGLDVMGVAHVVNLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAI 493 (565)
Q Consensus 433 ~~~~Gidip~v~~Vi~~~~~~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~d-~~~~~~l~~~~ 493 (565)
++++|+|+|++++||++|+|. +...|+||+||+||.|+.|.++++++..+ ...++.+++.+
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHh
Confidence 999999999999999999994 67899999999999999999999998765 66666665544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-50 Score=404.02 Aligned_cols=334 Identities=36% Similarity=0.564 Sum_probs=284.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
+++.+.+.+..+|+..|+++|+++++.+++++++++.+|||+|||++|+++++.. +.++|||+|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5688999999999999999999999999999999999999999999998887764 56799999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCH
Q 008443 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 287 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~ 287 (565)
.|+.+.++++.... +..+..+.|+.........+. .++|+|+||++|.+.+......+.++++||+||+|++.+.++.
T Consensus 70 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 70 RQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 99999999987654 578888889888776655554 4899999999999988887778889999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhh
Q 008443 288 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 288 ~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 367 (565)
..+..++..++...+++++|||++.........++.++..+... .....+...+.......+. .+..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~------ 216 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALR------ 216 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHH------
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHH------
Confidence 99999999999889999999999999988888888877665332 2233444444444433321 112221
Q ss_pred hccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEE
Q 008443 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 447 (565)
Q Consensus 368 ~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi 447 (565)
.....++||||+++++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 217 ---~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 217 ---ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp ---TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE
T ss_pred ---hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE
Confidence 1234579999999999999998886 688999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008443 448 NLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 448 ~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~ 493 (565)
++++|.++..|+||+||+||.|++|.+++++. .+...++.+++.+
T Consensus 290 ~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 290 NFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp ESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999999999 8888888776654
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-51 Score=435.33 Aligned_cols=381 Identities=27% Similarity=0.431 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCEEEEccCC
Q 008443 91 FNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETG 168 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~--~~~lv~a~TG 168 (565)
..++..+.+...++.... ...+.|.....+...++++.+++.+...|+..|+++|.+|++.++++ +++|+.+|||
T Consensus 92 ~~~~~~~~~~~~~~~~~~---~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTG 168 (508)
T 3fho_A 92 XXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSG 168 (508)
T ss_dssp --------------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSS
T ss_pred cccccccccccccccccc---cccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 334444444444443221 11233455566677789999999999999999999999999999988 8999999999
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeE
Q 008443 169 SGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSI 248 (565)
Q Consensus 169 sGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I 248 (565)
+|||++|+++++..+... ..++++|||+|+++|+.|+.+.+++++... .+......++.... ....+++|
T Consensus 169 sGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~I 238 (508)
T 3fho_A 169 TGKTAAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPK----GAKIDAQI 238 (508)
T ss_dssp TTSHHHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC--------------CCCCSE
T ss_pred ccHHHHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccc----cccCCCCE
Confidence 999999999888876543 236689999999999999999999987654 34444444443221 22346899
Q ss_pred EEECchHHHHHHHcCCCCCCCceEEEecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeE
Q 008443 249 VVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQ 327 (565)
Q Consensus 249 lv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 327 (565)
+|+||++|.+.+......+.++++|||||||++.+ .++...+..++..++++.|++++|||++.....+...++..+..
T Consensus 239 vv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~ 318 (508)
T 3fho_A 239 VIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANE 318 (508)
T ss_dssp EEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEE
T ss_pred EEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeE
Confidence 99999999999988888899999999999999987 57889999999999999999999999999899999988888877
Q ss_pred EEecCcCCCCCceEEEEEEecc-chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecC
Q 008443 328 VKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 406 (565)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~ 406 (565)
+...........+...+..... ..+...+...+... ..+++||||+++.+|+.+++.|.+.++.+..+||
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~---------~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg 389 (508)
T 3fho_A 319 IRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL---------TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTG 389 (508)
T ss_dssp ECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC------------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-
T ss_pred EEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc---------CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeC
Confidence 7665544444444444444433 33333333333221 2346999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC------CCccchhhhhcccccCCCceeEEEEecc
Q 008443 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KTVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------~s~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+| .+...|+||+||+||.|+.|.+++++.+
T Consensus 390 ~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 390 NLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp ----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999 7899999999999999999999999985
Q ss_pred -ccHHHHHHHHHHH
Q 008443 481 -RDMLLVAQIKKAI 493 (565)
Q Consensus 481 -~d~~~~~~l~~~~ 493 (565)
.+...+..+++.+
T Consensus 470 ~~~~~~~~~i~~~~ 483 (508)
T 3fho_A 470 KKSWEEMNAIQEYF 483 (508)
T ss_dssp TTSSSSHHHHHHHS
T ss_pred hHHHHHHHHHHHHH
Confidence 4555566665554
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.4e-49 Score=419.33 Aligned_cols=340 Identities=17% Similarity=0.284 Sum_probs=270.2
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 124 TDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 124 ~~~~l~~~l~~~l~~-~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
.++++++.+.+.|+. +|+..|+|+|.++++.++.|+++|+.+|||+|||++|++|++.. ++++|||+|
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVisP 92 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVICP 92 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEECS
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEeC
Confidence 457889999999998 69999999999999999999999999999999999999998652 458999999
Q ss_pred chhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH------hCCCeEEEECchHHHH------HHHcCCCCCCCc
Q 008443 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL------RGGVSIVVATPGRFLD------HLQQGNTSLSRV 270 (565)
Q Consensus 203 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ilv~T~~~l~~------~~~~~~~~~~~~ 270 (565)
+++|+.|+.+.++.+ ++.+..+.|+....+..... .+.++|+|+||++|.. .+.. ...+.++
T Consensus 93 ~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 93 LISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp CHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred HHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 999999999999886 46778888887766543322 4679999999998742 2221 2346689
Q ss_pred eEEEecchhhhhhCC--CHHHHHH--HHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEE
Q 008443 271 SFVILDEADRMLDMG--FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEK 346 (565)
Q Consensus 271 ~~iIiDE~H~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (565)
++|||||||++.+++ |.+.+.. ++....++.+++++|||++..+...+..++..+....... .....++......
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~ 245 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQ 245 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEe
Confidence 999999999999877 6666554 3333345788999999999988777776665443332222 1122333332222
Q ss_pred ecc--chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCC
Q 008443 347 VSE--NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (565)
Q Consensus 347 ~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 424 (565)
... ..+...+.+.+.. .....++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+
T Consensus 246 ~~~~~~~~~~~l~~~l~~--------~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~ 317 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLING--------RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE 317 (591)
T ss_dssp CCSSHHHHHHHHHHHHTT--------TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHH--------hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 211 1222333333221 123457999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 425 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 425 ~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
++|||||+++++|||+|+|++||++++|.|...|+|++|||||.|++|.|++++...|...+..+
T Consensus 318 ~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887665544
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.1e-48 Score=410.93 Aligned_cols=339 Identities=22% Similarity=0.336 Sum_probs=271.8
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 121 ESFTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
.+|+++++++.+.+.|+. +|+..|+++|.++++.++.|+++++.+|||+|||++|++|++.. ++++||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 568899999999999997 89999999999999999999999999999999999999988743 457999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH----HHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEe
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR----SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIi 275 (565)
|+|+++|+.|+.+.++.+ ++.+..+.++....+.. ....+..+|+++||++|........+...++++|||
T Consensus 71 i~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred ECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 999999999999999875 46677787877655433 223467999999999995322222233468999999
Q ss_pred cchhhhhhCC--CHHHHHH---HHHhCCCCCeEEEEeccccHHHHHHHHhhc--CCCeEEEecCcCCCCCceEEEEEEec
Q 008443 276 DEADRMLDMG--FEPQIRE---VMQNLPDKHQTLLFSATMPVEIEALAQGYL--TDPVQVKVGKVSSPTANVIQILEKVS 348 (565)
Q Consensus 276 DE~H~~~~~~--~~~~~~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (565)
||+|++.++| |.+.+.. +...++ +.+++++|||++......+...+ .++..+ ..... ..++... ...
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~--r~~l~~~--v~~ 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPNIRYM--LME 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC--CTTEEEE--EEE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC--CCceEEE--EEe
Confidence 9999999876 6555544 445554 57899999999987655444333 333332 22222 2233322 223
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEE
Q 008443 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
...+...+...+... +..++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|+++||
T Consensus 220 ~~~~~~~l~~~l~~~---------~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ---------RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp CSSHHHHHHHHHHHT---------TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 345555565555432 23369999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 008443 429 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~ 490 (565)
|||+++++|||+|+|++||++++|.|...|+|++||+||.|++|.+++++++.|....+.+.
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877665543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.2e-47 Score=392.67 Aligned_cols=325 Identities=20% Similarity=0.258 Sum_probs=255.8
Q ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 132 IMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 132 l~~~l~~-~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
+.+.+++ .++ +|+++|.++++.++.|+++++++|||+|||++|+++++... . .++++|||+|+++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~-------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R-------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-T-------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-c-------CCCEEEEEECCHHHHHHH
Confidence 3344444 344 89999999999999999999999999999999987776654 2 377899999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEECCCcH---HHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh---
Q 008443 211 EKEVKALSRSLDSFKTAIVVGGTNI---AEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--- 283 (565)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~--- 283 (565)
.+.++++.. .++.+..++|+... ......+. +.++|+|+||++|.+.+.. ..+.++++|||||||++.+
T Consensus 81 ~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 81 LERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 999999866 36889999999887 33334444 4499999999999877765 6677899999999997754
Q ss_pred --------CCCHHH-HHHHHHhCC-----------CCCeEEEEecc-ccHHHH-HHHHhhcCCCeEEEecCcCCCCCceE
Q 008443 284 --------MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQGYLTDPVQVKVGKVSSPTANVI 341 (565)
Q Consensus 284 --------~~~~~~-~~~i~~~~~-----------~~~~~l~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (565)
.+|... +..++..++ +..|++++||| ++..+. .+...++. +...........+.
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~ 232 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNIT 232 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccch
Confidence 566666 777887765 78899999999 454332 22232322 12222233344555
Q ss_pred EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceE-EecCCCChhhHHHHHHhh
Q 008443 342 QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDF 420 (565)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f 420 (565)
+.+... .+...+...+... . .++||||+++.+|+.+++.|...++.+. .+||. +|+ ++.|
T Consensus 233 ~~~~~~---~~~~~l~~~l~~~---~-------~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 233 HVRISS---RSKEKLVELLEIF---R-------DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp EEEESS---CCHHHHHHHHHHH---C-------SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred heeecc---CHHHHHHHHHHHc---C-------CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 554444 3445555555441 1 2599999999999999999999999998 88984 444 9999
Q ss_pred hcCCeeEEEe----ccccccCCCccC-ccEEEEcCCC--CCccchhhhhcccccCC----CceeEEEEeccccHHHHHHH
Q 008443 421 RNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLP--KTVEDYVHRIGRTGRGG----SMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 421 ~~g~~~vLv~----T~~~~~Gidip~-v~~Vi~~~~~--~s~~~~~Q~~GRagR~g----~~g~~~~~~~~~d~~~~~~l 489 (565)
++|+++|||| |+++++|+|+|+ |++||++|+| .+...|+||+||+||.| +.|.+++++ .|...+..+
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l 371 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESL 371 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999987 479999998 677778888
Q ss_pred HHHHh
Q 008443 490 KKAIV 494 (565)
Q Consensus 490 ~~~~~ 494 (565)
++.+.
T Consensus 372 ~~~~~ 376 (414)
T 3oiy_A 372 KTRLL 376 (414)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87776
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-45 Score=412.08 Aligned_cols=341 Identities=19% Similarity=0.214 Sum_probs=262.5
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
...|..+++++.+...+...++..|+++|.+|++.+..|+++|++||||+|||++|+++++..+. +++++||
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlv 232 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIY 232 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEE
Confidence 34566677777776666677778899999999999999999999999999999999999887763 3778999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
++|+++|+.|+++.|+++++ .+++++|+.. ...+++|+|+||++|.+++..+...+.++++|||||||
T Consensus 233 l~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 233 TSPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300 (1108)
T ss_dssp EESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG
T ss_pred EcCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh
Confidence 99999999999999999874 4777888765 34568999999999999998887778899999999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHH--HHHHHHhhcCCCeEEEecCcCCCCCceEEEEEE---------ec
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE--IEALAQGYLTDPVQVKVGKVSSPTANVIQILEK---------VS 348 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 348 (565)
++.+.+++..+..++..+++..|+|+||||+++. +..+.......+..+........ .+...+.. +.
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeec
Confidence 9998888999999999999999999999998764 44555555555544433322111 11111100 00
Q ss_pred cch----------------------------------------H---HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchh
Q 008443 349 ENE----------------------------------------K---VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT 385 (565)
Q Consensus 349 ~~~----------------------------------------~---~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~ 385 (565)
... + ...+...+.... . ....++||||+++.
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~-~-----~~~~~vIVF~~sr~ 452 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW-K-----KKYNPVIVFSFSKR 452 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHH-H-----TTCCCEEEEESCHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHH-h-----cCCCCEEEEeCcHH
Confidence 000 0 111111111111 1 12346999999999
Q ss_pred hHHHHHHHHHHCCCc---------------------------------------eEEecCCCChhhHHHHHHhhhcCCee
Q 008443 386 RCDEVSEALVAEGLH---------------------------------------AVALHGGRNQSDRESALRDFRNGSTN 426 (565)
Q Consensus 386 ~a~~l~~~l~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ 426 (565)
.|+.++..|...++. +..+||+|++.+|..+++.|++|.++
T Consensus 453 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik 532 (1108)
T 3l9o_A 453 DCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 532 (1108)
T ss_dssp HHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe
Confidence 999999988653322 78999999999999999999999999
Q ss_pred EEEeccccccCCCccCccEEEEcCCCC--------CccchhhhhcccccCC--CceeEEEEeccc-cHHHHHH
Q 008443 427 ILVATDVASRGLDVMGVAHVVNLDLPK--------TVEDYVHRIGRTGRGG--SMGQATSFYTDR-DMLLVAQ 488 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~~~--------s~~~~~Q~~GRagR~g--~~g~~~~~~~~~-d~~~~~~ 488 (565)
|||||+++++|||+|++++||+++.+. |+..|+||+|||||.| ..|.|++++.+. +...+..
T Consensus 533 VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~ 605 (1108)
T 3l9o_A 533 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 605 (1108)
T ss_dssp EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHH
T ss_pred EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHH
Confidence 999999999999999999999877644 5556999999999999 679999988776 3333443
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-44 Score=393.29 Aligned_cols=337 Identities=19% Similarity=0.263 Sum_probs=259.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~-l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
.+|+++++++.+.+.+...|+..|+++|.++++. +..+++++++||||+|||++|.+++++.+... +++++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEE
Confidence 4699999999999999999999999999999999 77889999999999999999999998877653 678999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
++|+++|+.|+.+.++.+. .. ++.++.++|+....+. ....++|+|+||++|...+......++++++|||||+|
T Consensus 81 i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWE-LI-GFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGG-GG-TCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EeCcHHHHHHHHHHHHHhh-cC-CCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999996443 32 5788888887654332 12368999999999999888776668899999999999
Q ss_pred hhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEE------------EEEEe
Q 008443 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQ------------ILEKV 347 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 347 (565)
++.+.+++..+..++..++ +.|+|+||||+++. ..+.. ++..+. +....... .+.. .....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r~~---~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP-VATNWRPV---PLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCCCSS---CEEEEEEEECSSTTEEEEEET
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCCCCC---CceEEEEecCCcccceeeecC
Confidence 9988788888888887776 78899999999752 33333 333211 11111000 0110 01111
Q ss_pred ccc----hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC-------------------------
Q 008443 348 SEN----EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------- 398 (565)
Q Consensus 348 ~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~------------------------- 398 (565)
... .........+.+... ..+++||||+++++++.+++.|.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSLS-------KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred cchhhhcccchHHHHHHHHHHh-------cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 100 000122222222221 23469999999999999999998642
Q ss_pred -----------CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cC-------CCCCcc
Q 008443 399 -----------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-------LPKTVE 456 (565)
Q Consensus 399 -----------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~-------~~~s~~ 456 (565)
..+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24889999999999999999999999999999999999999999999999 88 789999
Q ss_pred chhhhhcccccCCC--ceeEEEEeccccH
Q 008443 457 DYVHRIGRTGRGGS--MGQATSFYTDRDM 483 (565)
Q Consensus 457 ~~~Q~~GRagR~g~--~g~~~~~~~~~d~ 483 (565)
+|.||+|||||.|. .|.|++++...+.
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999884 7999999987763
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.1e-45 Score=400.32 Aligned_cols=332 Identities=20% Similarity=0.275 Sum_probs=263.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~-l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
+|+++++++.+.+.+...|+..|+++|.++++. +..+++++++||||+|||++|.+++++.+... ++++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 488999999999999999999999999999998 78899999999999999999999999887753 6789999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|+.+.++++... ++.++.++|+...... ..+.++|+|+||++|...+......++++++|||||+|+
T Consensus 75 ~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred cCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999654432 5788888887654332 224689999999999988887766688999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEE------EEec-----c
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQIL------EKVS-----E 349 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~ 349 (565)
+.+.++...+..++..++.+.|+|++|||+++. ..+.. ++.... +.... .+ ..+...+ .... .
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~--rp-~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDW--RP-VKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCC--CS-SEEEEEEEETTEEEETTSCEEEC
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCC--CC-CcceEEEEeCCeeeccccchhhh
Confidence 988888888999988887788999999999752 33333 333211 11110 11 1111100 0111 1
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--------------------------------
Q 008443 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------- 397 (565)
Q Consensus 350 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------------------------------- 397 (565)
......+.+.+ . +.+++||||+++++|+.+++.|.+.
T Consensus 224 ~~~~~~~~~~~----~-------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 292 (720)
T 2zj8_A 224 SSWEELVYDAI----R-------KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA 292 (720)
T ss_dssp SSTTHHHHHHH----H-------TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHH
T ss_pred hHHHHHHHHHH----h-------CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHH
Confidence 12222222222 1 1236999999999999999998753
Q ss_pred -CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cC----CCCCccchhhhhcccccC
Q 008443 398 -GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD----LPKTVEDYVHRIGRTGRG 468 (565)
Q Consensus 398 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~----~~~s~~~~~Q~~GRagR~ 468 (565)
...+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 293 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 293 IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 124889999999999999999999999999999999999999999999998 66 588999999999999998
Q ss_pred C--CceeEEEEecccc
Q 008443 469 G--SMGQATSFYTDRD 482 (565)
Q Consensus 469 g--~~g~~~~~~~~~d 482 (565)
| ..|.|++++...+
T Consensus 373 g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDD 388 (720)
T ss_dssp TTCSEEEEEEECSSSC
T ss_pred CCCCCceEEEEecCcc
Confidence 8 4799999998877
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.2e-43 Score=379.29 Aligned_cols=335 Identities=22% Similarity=0.272 Sum_probs=226.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.++++++++|||+|||++|+++++..+.... ...++++|||+|+++|+.|+.+.+++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999988776642 1236789999999999999999999998765
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC-CCCCceEEEecchhhhhhCC-CHHHHHHHHHhC--
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIREVMQNL-- 297 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~-~~~~~~~i~~~~-- 297 (565)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+ +...+...+...
T Consensus 80 -~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 -GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp -TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred -CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 6889999999876655555556699999999999999988766 78889999999999998765 222222333321
Q ss_pred ---CCCCeEEEEeccccHH-----------HHHHHHhhcCCCeEEEecCc-------CCCCCceEEEEEEe---------
Q 008443 298 ---PDKHQTLLFSATMPVE-----------IEALAQGYLTDPVQVKVGKV-------SSPTANVIQILEKV--------- 347 (565)
Q Consensus 298 ---~~~~~~l~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------- 347 (565)
.+..+++++||||... +..+.. .+.... +..... ..............
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASV-IATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSE-EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCee-eeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2457899999999431 111111 111111 111000 00000111000000
Q ss_pred --------------------------------------------------------------------------------
Q 008443 348 -------------------------------------------------------------------------------- 347 (565)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (565)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ---------------------------------------------------ccchHHHHHHHHHHHHHHhhhccCCCCCe
Q 008443 348 ---------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 348 ---------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
....|...+.+.+.+.... .+..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~k 391 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL-----KPETK 391 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH-----CTTCC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc-----CCCce
Confidence 0011222222233222111 23457
Q ss_pred EEEEEcchhhHHHHHHHHHHCC------------CceEEecCCCChhhHHHHHHhhhc-CCeeEEEeccccccCCCccCc
Q 008443 377 TIVFVERKTRCDEVSEALVAEG------------LHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 377 ~lvF~~~~~~a~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v 443 (565)
+||||+++..++.+++.|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|+|
T Consensus 392 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v 471 (555)
T 3tbk_A 392 TILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAEC 471 (555)
T ss_dssp EEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSC
T ss_pred EEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccC
Confidence 9999999999999999999874 344555679999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
++||+||+|+|+..|+||+|| ||. +.|.+++++...+......+
T Consensus 472 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 472 NLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999 898 88999999998766554444
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.6e-44 Score=383.96 Aligned_cols=332 Identities=20% Similarity=0.267 Sum_probs=197.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 140 ~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
+..+|+++|.++++.++.++++++++|||+|||++|+++++..+.... .+.++++|||+|+++|+.|+.+.+++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999999999999999999888776542 12367899999999999999999999987
Q ss_pred cCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC-CCCCceEEEecchhhhhhCCCHHHH-HHHHHh-
Q 008443 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQI-REVMQN- 296 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~~~~~~-~~i~~~- 296 (565)
.. ++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+....+ ...+..
T Consensus 81 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 81 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 64 6788889998876665555556799999999999999988776 7889999999999999877643222 222222
Q ss_pred ---CCCCCeEEEEeccccH-----------HHHHHHHhhcCCCeEEEecCcC-------CCCCceEEEEEEe--------
Q 008443 297 ---LPDKHQTLLFSATMPV-----------EIEALAQGYLTDPVQVKVGKVS-------SPTANVIQILEKV-------- 347 (565)
Q Consensus 297 ---~~~~~~~l~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------- 347 (565)
..+..+++++||||.. .+..+...+ .... +...... .............
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQA-ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSE-EECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeE-ecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 1356789999999942 111121111 1110 0000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008443 348 -------------------------------------------------------------------------------- 347 (565)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (565)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 317 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------ccchHHHHHHHHHHHHHHhhhccCCCCCe
Q 008443 348 ---------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 348 ---------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
....|...+.+.+.+.... .+..+
T Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~-----~~~~k 392 (556)
T 4a2p_A 318 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY-----NPQTR 392 (556)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH-----CTTCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC-----CCCce
Confidence 0011222222222222110 23457
Q ss_pred EEEEEcchhhHHHHHHHHHHC------------CCceEEecCCCChhhHHHHHHhhhc-CCeeEEEeccccccCCCccCc
Q 008443 377 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 377 ~lvF~~~~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v 443 (565)
+||||+++..++.+++.|... |.....+||++++.+|..++++|++ |+++|||||+++++|||+|+|
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 999999999999999999876 4555667888999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 008443 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~ 484 (565)
++||+||+|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999 999 789999999887654
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-44 Score=395.43 Aligned_cols=345 Identities=21% Similarity=0.291 Sum_probs=217.6
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
+.+..+|+..|+++|.++++.++.|+++|+++|||+|||++|+++++..+...+. +.++++|||+|+++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999887765421 1236899999999999999999
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC-CCCCceEEEecchhhhhhCC-CHHHHH
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIR 291 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~-~~~~~~ 291 (565)
+++++... ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.. +...+.
T Consensus 81 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99998653 6788899998765444445555799999999999999988766 68899999999999987554 222222
Q ss_pred HHHHh-----CCCCCeEEEEecccc-------HH-HHHHHHh---------------------hcCCCeEEEecCcCCCC
Q 008443 292 EVMQN-----LPDKHQTLLFSATMP-------VE-IEALAQG---------------------YLTDPVQVKVGKVSSPT 337 (565)
Q Consensus 292 ~i~~~-----~~~~~~~l~~SAT~~-------~~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 337 (565)
..+.. ..+..++|+|||||. .+ ...+... +...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 245678999999996 11 1111111 11111111000000000
Q ss_pred C-------------------------c--------------------------eEEEEEEe-------------------
Q 008443 338 A-------------------------N--------------------------VIQILEKV------------------- 347 (565)
Q Consensus 338 ~-------------------------~--------------------------~~~~~~~~------------------- 347 (565)
. . ........
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0 0 00000000
Q ss_pred ---------------------------------------------------------ccchHHHHHHHHHHHHHHhhhcc
Q 008443 348 ---------------------------------------------------------SENEKVDRLLALLVEEAFLAEKS 370 (565)
Q Consensus 348 ---------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~ 370 (565)
....+...+...+.+.. .
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~-----~ 394 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-----H 394 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH-----T
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----c
Confidence 01122333333332221 1
Q ss_pred CCCCCeEEEEEcchhhHHHHHHHHHHCC----CceEEe--------cCCCChhhHHHHHHhhhc-CCeeEEEeccccccC
Q 008443 371 CHPFPLTIVFVERKTRCDEVSEALVAEG----LHAVAL--------HGGRNQSDRESALRDFRN-GSTNILVATDVASRG 437 (565)
Q Consensus 371 ~~~~~~~lvF~~~~~~a~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~G 437 (565)
..+..++||||+++..++.+++.|...+ +.+..+ |+++++.+|..++++|++ |+++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 1234579999999999999999999988 888888 559999999999999998 999999999999999
Q ss_pred CCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 438 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 438 idip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
||+|+|++||+||+|+++..|+||+|| ||. +.|.+++++...+......+
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999 998 77999999988776554444
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-44 Score=396.06 Aligned_cols=332 Identities=19% Similarity=0.257 Sum_probs=256.1
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 122 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
+|++++ +++.+.+.+...||..|+++|.++++.+..+++++++||||+|||++|.++++..+.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 467777 8999999999999999999999999999999999999999999999999999887653 567999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
++|+++|+.|+.+.++.+. .. ++.++.++|+....+. ....++|+|+||++|...+......++++++|||||+|
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KI-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 9999999999999996443 22 5788888887654331 12468999999999999888766668899999999999
Q ss_pred hhhhCCCHHHHHHHHHhC---CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEE------EEeccc
Q 008443 280 RMLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQIL------EKVSEN 350 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 350 (565)
++.+.++...+..++..+ .++.|+|++|||+++ ...+.. ++..+. +....... .+...+ ......
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~---~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 149 LLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPV---PLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSS---CEEEEEECSSEEEEEETT
T ss_pred ecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCc---cceEEEeeCCeeeccCcc
Confidence 998877887777776555 568899999999985 333333 443221 11111111 111100 011100
Q ss_pred -------hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--------------------------
Q 008443 351 -------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------- 397 (565)
Q Consensus 351 -------~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------------------------- 397 (565)
.....+.+.+ . ..+++||||+++++++.+++.|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~----~-------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV----A-------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEEECCHHHHHHHHH----H-------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred hhhhhhhhHHHHHHHHH----h-------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 1222222222 1 1236999999999999999988753
Q ss_pred ----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cC---CCCCccchhhhhcccc
Q 008443 398 ----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD---LPKTVEDYVHRIGRTG 466 (565)
Q Consensus 398 ----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~---~~~s~~~~~Q~~GRag 466 (565)
+..+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|.||+||||
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 135788999999999999999999999999999999999999999999998 66 6889999999999999
Q ss_pred cCC--CceeEEEEeccccH
Q 008443 467 RGG--SMGQATSFYTDRDM 483 (565)
Q Consensus 467 R~g--~~g~~~~~~~~~d~ 483 (565)
|.| ..|.|++++...+.
T Consensus 372 R~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp CTTTCSCEEEEEECCGGGH
T ss_pred CCCCCCCceEEEEecCccH
Confidence 988 47999999988773
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=389.69 Aligned_cols=319 Identities=22% Similarity=0.272 Sum_probs=249.0
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|+++|.++++.+..++++++++|||+|||++|.++++..+. .+.++||++|+++|+.|+++.|.++++
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 599999999999999999999999999999999888776553 367899999999999999999999885
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCe
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
.++.++|+... ..+++|+|+||++|.+++..+...+.++++|||||+|++.+.+++..+..++..+++..|
T Consensus 155 --~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 --DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp --CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred --CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 57778887643 245899999999999998888788899999999999999999899999999999999999
Q ss_pred EEEEeccccHHHH--HHHHhhcCCCeEEEecCcCCCCCceEEEEEE---------eccch--------------------
Q 008443 303 TLLFSATMPVEIE--ALAQGYLTDPVQVKVGKVSSPTANVIQILEK---------VSENE-------------------- 351 (565)
Q Consensus 303 ~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------------- 351 (565)
+|++|||+++..+ .++......+..+....... ..+...+.. +....
T Consensus 226 il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (1010)
T 2xgj_A 226 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGD 303 (1010)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcc
Confidence 9999999986532 33333334444433322111 112211111 00000
Q ss_pred ---------------H--------HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCC---------
Q 008443 352 ---------------K--------VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL--------- 399 (565)
Q Consensus 352 ---------------~--------~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~--------- 399 (565)
+ ...+.. +...... ....++||||+++..|+.+++.|...++
T Consensus 304 ~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~-l~~~l~~-----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 304 DPNSTDSRGKKGQTYKGGSAKGDAKGDIYK-IVKMIWK-----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -------------------------CHHHH-HHHHHHH-----HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred cccccccccccccccccccccccchHHHHH-HHHHHHh-----cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 0 001111 1111111 1123699999999999999998876443
Q ss_pred ------------------------------ceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE-
Q 008443 400 ------------------------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN- 448 (565)
Q Consensus 400 ------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~- 448 (565)
.+..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 2788999999999999999999999999999999999999999999999
Q ss_pred ---cCC----CCCccchhhhhcccccCCC--ceeEEEEeccc-cHHHHHHH
Q 008443 449 ---LDL----PKTVEDYVHRIGRTGRGGS--MGQATSFYTDR-DMLLVAQI 489 (565)
Q Consensus 449 ---~~~----~~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~-d~~~~~~l 489 (565)
||. |.++..|+||+|||||.|+ .|.|++++++. +...+.++
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 8899999999999999997 49999999865 54444444
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.3e-43 Score=388.39 Aligned_cols=336 Identities=20% Similarity=0.258 Sum_probs=204.6
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+|+..|+++|.++++.++.|+++|+++|||+|||++|+++++..+.... .+.++++|||+|+++|+.|+.+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999888776542 123678999999999999999999999
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC-CCCCceEEEecchhhhhhCCCH-HHHHHHHH
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFE-PQIREVMQ 295 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~~~-~~~~~i~~ 295 (565)
+... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.. ..+..++.
T Consensus 320 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8764 6889999999877666666667899999999999999988766 7889999999999998876432 22223332
Q ss_pred h----CCCCCeEEEEeccccH-----------HHHHHHHh------------------hcCCCeEEEecCcCCCCCc---
Q 008443 296 N----LPDKHQTLLFSATMPV-----------EIEALAQG------------------YLTDPVQVKVGKVSSPTAN--- 339 (565)
Q Consensus 296 ~----~~~~~~~l~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--- 339 (565)
. ..+..+++++||||.. .+..+... ++..+..............
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2 1456789999999942 22221111 1111111100000000000
Q ss_pred ---------------------eEEEE-EEec-------------------------------------------------
Q 008443 340 ---------------------VIQIL-EKVS------------------------------------------------- 348 (565)
Q Consensus 340 ---------------------~~~~~-~~~~------------------------------------------------- 348 (565)
+.... ....
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 0000
Q ss_pred ----------------------------------------------------cchHHHHHHHHHHHHHHhhhccCCCCCe
Q 008443 349 ----------------------------------------------------ENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (565)
Q Consensus 349 ----------------------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 376 (565)
...|...+...+.+... ..+..+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~-----~~~~~k 633 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR-----YNPQTR 633 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH-----HCSSCC
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc-----cCCCCe
Confidence 01112222222222111 123457
Q ss_pred EEEEEcchhhHHHHHHHHHHC------------CCceEEecCCCChhhHHHHHHhhhc-CCeeEEEeccccccCCCccCc
Q 008443 377 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (565)
Q Consensus 377 ~lvF~~~~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~v 443 (565)
+||||+++..++.+++.|... |..+..+||++++.+|..++++|++ |+++|||||+++++|||+|+|
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v 713 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCC
T ss_pred EEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhC
Confidence 999999999999999999874 5566677899999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHH
Q 008443 444 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 484 (565)
Q Consensus 444 ~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~ 484 (565)
++||+||+|+|+..|+||+|| ||. +.|.+++++...+..
T Consensus 714 ~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999 999 789999999876543
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.5e-42 Score=362.89 Aligned_cols=325 Identities=23% Similarity=0.274 Sum_probs=243.2
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|+++|.++++.++.+ ++++++|||+|||++++++++..+.. .++++|||+|+++|+.|+.++++++++. +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-P 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS-C
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc-c
Confidence 7999999999999998 99999999999999998877776552 3678999999999999999999998743 2
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCe
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
...+..+.|+.......... ..++|+|+||+.|...+....+.+.++++|||||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 45788888888766544333 35899999999999998887788899999999999999865444444444444455678
Q ss_pred EEEEeccccHH---HHHHHHhhcCCCeEEEecCcCC-----CCCceEEEEEEec--------------------------
Q 008443 303 TLLFSATMPVE---IEALAQGYLTDPVQVKVGKVSS-----PTANVIQILEKVS-------------------------- 348 (565)
Q Consensus 303 ~l~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------- 348 (565)
++++||||... +..+...+.............. .............
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999733 3333333222211111110000 0000110000000
Q ss_pred --------------------------------------------------------------------------------
Q 008443 349 -------------------------------------------------------------------------------- 348 (565)
Q Consensus 349 -------------------------------------------------------------------------------- 348 (565)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred ----------------------cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecC
Q 008443 349 ----------------------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 406 (565)
Q Consensus 349 ----------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~ 406 (565)
...|...+.+.+.+.... ....++||||+++..++.+++.|...++.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g 393 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 393 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEec
Confidence 011222222222221110 23457999999999999999999999999999999
Q ss_pred --------CCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 407 --------GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 407 --------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
+++..+|.+++++|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+ |.++.++
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~ 472 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILM 472 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred ccccH
Q 008443 479 TDRDM 483 (565)
Q Consensus 479 ~~~d~ 483 (565)
...+.
T Consensus 473 ~~~t~ 477 (494)
T 1wp9_A 473 AKGTR 477 (494)
T ss_dssp ETTSH
T ss_pred ecCCH
Confidence 87754
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.2e-42 Score=392.83 Aligned_cols=323 Identities=20% Similarity=0.247 Sum_probs=253.2
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ +|+++|.++++.++.|+++|++||||+|||++|+++++..+ . .++++|||+|+++|+.|+.+.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~-------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R-------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-T-------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-h-------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3576 79999999999999999999999999999998866666554 2 4788999999999999999999996
Q ss_pred HhcCCCceEEEEECCCcH---HHHHHHHhC-CCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhh----------
Q 008443 218 SRSLDSFKTAIVVGGTNI---AEQRSELRG-GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD---------- 283 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~---------- 283 (565)
. . .++.+..++|+... ......+.. .++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 145 ~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 A-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp S-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred h-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 5 3 46899999999887 444555554 499999999999887764 6677899999999987654
Q ss_pred -CCCHHH-HHHHHHhCC-----------CCCeEEEEecc-ccHHHH-HHHHhhcCCCeEEEecCcCCCCCceEEEEEEec
Q 008443 284 -MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQGYLTDPVQVKVGKVSSPTANVIQILEKVS 348 (565)
Q Consensus 284 -~~~~~~-~~~i~~~~~-----------~~~~~l~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (565)
.+|... +..++..++ .+.|++++||| .+..+. .+....+. +.+........++.+.+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC-
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec-
Confidence 677777 788888766 78899999999 444333 22333322 22233333445555555444
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceE-EecCCCChhhHHHHHHhhhcCCeeE
Q 008443 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFRNGSTNI 427 (565)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~v 427 (565)
.+...+...+... . +++||||+++..|+.+++.|...|+.+. .+|| +|++ ++.|++|+++|
T Consensus 296 --~k~~~L~~ll~~~---~-------~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF---R-------DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINI 357 (1104)
T ss_dssp --CCHHHHHHHHHHH---C-------SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSE
T ss_pred --CHHHHHHHHHHhc---C-------CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCE
Confidence 3455555555441 1 3599999999999999999999999998 9998 2555 99999999999
Q ss_pred EEe----ccccccCCCccC-ccEEEEcCCCC-------------------------------------------------
Q 008443 428 LVA----TDVASRGLDVMG-VAHVVNLDLPK------------------------------------------------- 453 (565)
Q Consensus 428 Lv~----T~~~~~Gidip~-v~~Vi~~~~~~------------------------------------------------- 453 (565)
||| |+++++|||+|+ |++||++|+|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 437 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEF 437 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 999 999999999999 99999999998
Q ss_pred -----------------------CccchhhhhcccccCCCce--eEEEEeccccHHHHHHHHHHHhhh
Q 008443 454 -----------------------TVEDYVHRIGRTGRGGSMG--QATSFYTDRDMLLVAQIKKAIVDA 496 (565)
Q Consensus 454 -----------------------s~~~~~Q~~GRagR~g~~g--~~~~~~~~~d~~~~~~l~~~~~~~ 496 (565)
++..|+||+||+||.|..| .++.++...|...++.|++.+...
T Consensus 438 ~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 438 VEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLI 505 (1104)
T ss_dssp HHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhh
Confidence 6678999999999965433 344444447888888888877643
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-41 Score=359.00 Aligned_cols=323 Identities=19% Similarity=0.228 Sum_probs=251.8
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ .|+++|..+++.++.|+ |..++||+|||++|++|++...+. |+.++||+||++||.|..+++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5799 99999999999999998 999999999999999999855442 667999999999999999999999
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC------CCCCCCceEEEecchhhhh-hCC----
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG---- 285 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~-~~~---- 285 (565)
+..+ ++.+++++||......... .+++|+|+||++| ++++... .+.++.+.++||||||.++ +.+
T Consensus 148 ~~~l-gl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFL-GLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHT-TCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 8876 7999999999887654433 3589999999999 7776543 2557889999999999987 653
Q ss_pred -----------CHHHHHHHHHhCCC---------CCeEE-----------------EEeccccH---HHHHH--HHhhcC
Q 008443 286 -----------FEPQIREVMQNLPD---------KHQTL-----------------LFSATMPV---EIEAL--AQGYLT 323 (565)
Q Consensus 286 -----------~~~~~~~i~~~~~~---------~~~~l-----------------~~SAT~~~---~~~~~--~~~~~~ 323 (565)
+...+..|+..+++ ..|++ ++|||.+. .+... +..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 56788889988863 56776 88999763 22222 111221
Q ss_pred -CCeEEE-------ec-----------------------------C----------------------------------
Q 008443 324 -DPVQVK-------VG-----------------------------K---------------------------------- 332 (565)
Q Consensus 324 -~~~~~~-------~~-----------------------------~---------------------------------- 332 (565)
+...+. +. .
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 111110 00 0
Q ss_pred ------------cCCCCCceE-EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCC
Q 008443 333 ------------VSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 333 ------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~ 399 (565)
...+..... ..+......+|...++..+......+ .++||||++++.++.+++.|...|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~-------~pvLVft~s~~~se~Ls~~L~~~gi 457 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTG-------QPVLVGTVAVETSELISKLLKNKGI 457 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHT-------CCEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcC-------CcEEEEECCHHHHHHHHHHHHHCCC
Confidence 000000000 11334456677777777776543222 2599999999999999999999999
Q ss_pred ceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCcc--------CccEEEEcCCCCCccchhhhhcccccCCCc
Q 008443 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSM 471 (565)
Q Consensus 400 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip--------~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~ 471 (565)
++..+||++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+++.|.+...|+||+||+||.|.+
T Consensus 458 ~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 458 PHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp CCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred CEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC
Confidence 999999999888887676677666 5999999999999999 788999999999999999999999999999
Q ss_pred eeEEEEeccccH
Q 008443 472 GQATSFYTDRDM 483 (565)
Q Consensus 472 g~~~~~~~~~d~ 483 (565)
|.+++|++..|.
T Consensus 536 G~s~~~vs~eD~ 547 (844)
T 1tf5_A 536 GITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEEETTSS
T ss_pred CeEEEEecHHHH
Confidence 999999987764
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.7e-43 Score=386.61 Aligned_cols=329 Identities=20% Similarity=0.259 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH-HHHHHHHHhc
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKALSRS 220 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~-~~~~~~~~~~ 220 (565)
..|+++|.++++.++.|+++|+++|||+|||++|+++++..+..... .+.++++|||+|+++|+.|+ .+.+++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999998887665311 11237799999999999999 9999999864
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHH------HcCCCCCCCceEEEecchhhhhhCC-CHHHHHHH
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL------QQGNTSLSRVSFVILDEADRMLDMG-FEPQIREV 293 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~------~~~~~~~~~~~~iIiDE~H~~~~~~-~~~~~~~i 293 (565)
.+.+..++|+....+....+.+.++|+|+||++|.+.+ ....+.+.++++|||||||++...+ +...+...
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 47888899987665544555577999999999999887 4445678899999999999986533 33323322
Q ss_pred HHhC-------------CCCCeEEEEeccccHH-----------HHHHHHhhcCCCeEEEecC-----cCCCCCceEEEE
Q 008443 294 MQNL-------------PDKHQTLLFSATMPVE-----------IEALAQGYLTDPVQVKVGK-----VSSPTANVIQIL 344 (565)
Q Consensus 294 ~~~~-------------~~~~~~l~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 344 (565)
+... .+..++|++||||... +..+...+....+...... .....+......
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 2211 1557899999999852 1212221111000000000 000000000000
Q ss_pred EEecc---------------------------------------------------------------------------
Q 008443 345 EKVSE--------------------------------------------------------------------------- 349 (565)
Q Consensus 345 ~~~~~--------------------------------------------------------------------------- 349 (565)
.....
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000
Q ss_pred ----------------------------------------------------------chHHHHHHHHHHHHHHhhhccC
Q 008443 350 ----------------------------------------------------------NEKVDRLLALLVEEAFLAEKSC 371 (565)
Q Consensus 350 ----------------------------------------------------------~~~~~~l~~~l~~~~~~~~~~~ 371 (565)
..+...+...+..... .
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~-----~ 396 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT-----R 396 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh-----c
Confidence 0000011111111110 0
Q ss_pred CC-CCeEEEEEcchhhHHHHHHHHHHC------CCceEEecCC--------CChhhHHHHHHhhhcCCeeEEEecccccc
Q 008443 372 HP-FPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGG--------RNQSDRESALRDFRNGSTNILVATDVASR 436 (565)
Q Consensus 372 ~~-~~~~lvF~~~~~~a~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 436 (565)
.+ ..++||||+++..++.+++.|... |+.+..+||+ |++.+|..++++|++|+++|||||+++++
T Consensus 397 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 397 TEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 11 457999999999999999999987 8999999999 99999999999999999999999999999
Q ss_pred CCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc
Q 008443 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
|||+|+|++||++|+|+|+..|+||+|||||.| +.+++++...
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999999987765 4444444433
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.6e-42 Score=383.44 Aligned_cols=336 Identities=19% Similarity=0.258 Sum_probs=201.4
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 137 ~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
...++..|+++|.++++.++.|+++++++|||+|||++|+++++..+.... .+.++++|||+|+++|+.|+.+.+++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999888877655431 12367899999999999999999999
Q ss_pred HHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCC-CCCCceEEEecchhhhhhCCC-HHHHHHHH
Q 008443 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGF-EPQIREVM 294 (565)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~iIiDE~H~~~~~~~-~~~~~~i~ 294 (565)
++... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. ...+..++
T Consensus 319 ~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred Hhccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 98764 6889999999866655445555689999999999999987766 788899999999999887642 22222333
Q ss_pred Hh----CCCCCeEEEEeccccH-----------HHHHHHHh------------------hcCCCeEEEecCcCCCCCc--
Q 008443 295 QN----LPDKHQTLLFSATMPV-----------EIEALAQG------------------YLTDPVQVKVGKVSSPTAN-- 339 (565)
Q Consensus 295 ~~----~~~~~~~l~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-- 339 (565)
.. ..+..+++++||||.. .+..+... ++..+..............
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 22 1455789999999942 11111111 1111111111000000000
Q ss_pred ----------------------eEEEE-EEecc-----------------------------------------------
Q 008443 340 ----------------------VIQIL-EKVSE----------------------------------------------- 349 (565)
Q Consensus 340 ----------------------~~~~~-~~~~~----------------------------------------------- 349 (565)
+.... .....
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 00000
Q ss_pred ------------------------------------------------------chHHHHHHHHHHHHHHhhhccCCCCC
Q 008443 350 ------------------------------------------------------NEKVDRLLALLVEEAFLAEKSCHPFP 375 (565)
Q Consensus 350 ------------------------------------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~ 375 (565)
..|...+.+.+.+ ........
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~-----~~~~~~~~ 632 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD-----AYRYNPQT 632 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH-----TTTSCTTC
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH-----HhccCCCC
Confidence 0000011111100 01113456
Q ss_pred eEEEEEcchhhHHHHHHHHHHC------------CCceEEecCCCChhhHHHHHHhhhc-CCeeEEEeccccccCCCccC
Q 008443 376 LTIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMG 442 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidip~ 442 (565)
++||||+++..++.+++.|... |.....+||+|++.+|.+++++|++ |+++|||||+++++|||+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 8999999999999999999986 5556667899999999999999999 99999999999999999999
Q ss_pred ccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccH
Q 008443 443 VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 443 v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
|++||+||+|+|+..|+||+|| ||. +.|.+++++...+.
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999999999 998 77999999887644
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.1e-42 Score=390.03 Aligned_cols=320 Identities=19% Similarity=0.275 Sum_probs=248.5
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..||. | ++|.++++.++.|++++++||||+|||+ |+++++..+.. .++++|||+|+++|+.|+.+.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 47998 9 9999999999999999999999999998 77888887765 3778999999999999999999999
Q ss_pred HhcCCCc----eEEEEECCCcHHHH---HHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHH
Q 008443 218 SRSLDSF----KTAIVVGGTNIAEQ---RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (565)
Q Consensus 218 ~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~ 290 (565)
+... ++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.. +.++++|||||||++.+ +...+
T Consensus 123 ~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~ 194 (1054)
T 1gku_B 123 AEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNV 194 (1054)
T ss_dssp HTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHH
T ss_pred Hhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccH
Confidence 8765 45 78899999887663 333445 99999999999987654 66899999999999987 46777
Q ss_pred HHHHHhCC-----------CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHH
Q 008443 291 REVMQNLP-----------DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (565)
Q Consensus 291 ~~i~~~~~-----------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (565)
..++..+. ...|++++|||++.. ..+...++..+..+.+........++.+.+. ...+...+...
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHH
Confidence 88877763 457899999998765 3222222222222222222223334444443 23344444444
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEe----ccccc
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA----TDVAS 435 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~ 435 (565)
+... ..++||||+++..|+.+++.|... +.+..+||++ ..+++.|++|+++|||| |++++
T Consensus 271 l~~~----------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 271 LEKL----------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp HTTS----------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------
T ss_pred Hhhc----------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeE
Confidence 3221 236999999999999999999988 9999999987 47889999999999999 99999
Q ss_pred cCCCccCc-cEEEEcCCC--------------------------------------------------------------
Q 008443 436 RGLDVMGV-AHVVNLDLP-------------------------------------------------------------- 452 (565)
Q Consensus 436 ~Gidip~v-~~Vi~~~~~-------------------------------------------------------------- 452 (565)
+|||+|+| ++||++|.|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999996 999999999
Q ss_pred ---------CCccchhhhhcccccCCCce--eEEEEeccccHHHHHHHHHHHhh
Q 008443 453 ---------KTVEDYVHRIGRTGRGGSMG--QATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 453 ---------~s~~~~~Q~~GRagR~g~~g--~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
.+...|+||+||+||.|..| .++.++...|...+..+++.+..
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987776 48888888888888888887765
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-41 Score=369.65 Aligned_cols=326 Identities=21% Similarity=0.244 Sum_probs=241.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 132 IMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 132 l~~~l~~~~~~~~~~~Q~~al~~l~~~------~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
+.+.+...+| +|+++|+++++.+..+ .++|++|+||+|||++|+++++..+.. |.+++|++|+++
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr~ 428 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHH
Confidence 3344567888 9999999999998865 589999999999999999998887653 678999999999
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH----HhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh
Q 008443 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+.|+++.+++++... ++.+..++|+....+.... ..+.++|+|+||+.+.+ ...+.++++|||||+|++
T Consensus 429 La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 9999999999998764 5889999999877654332 23569999999987753 366889999999999986
Q ss_pred hhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHH
Q 008443 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLV 361 (565)
Q Consensus 282 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 361 (565)
... .+..+.......++++|||||......... +.+.....+.........+. .......+...+...+.
T Consensus 503 g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~---~~~~~~~~~~~l~~~i~ 572 (780)
T 1gm5_A 503 GVK-----QREALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQ---TMLVPMDRVNEVYEFVR 572 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCE---ECCCCSSTHHHHHHHHH
T ss_pred hHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceE---EEEeccchHHHHHHHHH
Confidence 422 122222333467899999998765544332 22211111111111111121 12222334445555554
Q ss_pred HHHHhhhccCCCCCeEEEEEcchh--------hHHHHHHHHHH---CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEe
Q 008443 362 EEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 362 ~~~~~~~~~~~~~~~~lvF~~~~~--------~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
+... ...+++|||+..+ .++.+++.|.+ .++.+..+||+|++.+|+.+++.|++|+++||||
T Consensus 573 ~~l~-------~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 573 QEVM-------RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHTT-------TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHHh-------cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 4332 2235999999764 47888888887 4788999999999999999999999999999999
Q ss_pred ccccccCCCccCccEEEEcCCCC-CccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 431 TDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~-s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
|+++++|+|+|++++||++++|. +...|.||+||+||.|+.|.|++++.+.+.....++
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 99999999999999999999986 688899999999999999999999985444444444
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.3e-41 Score=377.21 Aligned_cols=316 Identities=21% Similarity=0.249 Sum_probs=239.6
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
+|+++|.++++.++.|+++++++|||+|||++|++++...+. .++++||++|+++|+.|+++.+++.+.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~--- 107 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD--- 107 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC---
Confidence 589999999999999999999999999999999887766532 377899999999999999999998764
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCe
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
++.++.++|+... ...++|+|+||++|.+.+......+.++++|||||+|++.+++++..+..++..++++.+
T Consensus 108 ~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 4678888888642 355899999999999999888778889999999999999999988889999999999999
Q ss_pred EEEEeccccHHHH--HHHHhhcCCCeEEEecCcCCCCCceEEEEE-------Ee--------------------------
Q 008443 303 TLLFSATMPVEIE--ALAQGYLTDPVQVKVGKVSSPTANVIQILE-------KV-------------------------- 347 (565)
Q Consensus 303 ~l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------------------------- 347 (565)
+|++|||+++..+ .+..........+...... ...+...+. .+
T Consensus 181 iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 181 FILLSATVPNTYEFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEEcCCCCChHHHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 9999999975432 2222111122222111111 011111000 00
Q ss_pred ------------------------------------------------------------ccchHHHHHHHHHHHHHHhh
Q 008443 348 ------------------------------------------------------------SENEKVDRLLALLVEEAFLA 367 (565)
Q Consensus 348 ------------------------------------------------------------~~~~~~~~l~~~l~~~~~~~ 367 (565)
....+...++..+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~----- 333 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK----- 333 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHH-----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh-----
Confidence 001112222222221
Q ss_pred hccCCCCCeEEEEEcchhhHHHHHHHHHHCCC---------------------------------------ceEEecCCC
Q 008443 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------------------------------------HAVALHGGR 408 (565)
Q Consensus 368 ~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~---------------------------------------~~~~~~~~~ 408 (565)
....++||||+++..|+.+++.|...++ .+..+||++
T Consensus 334 ----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 334 ----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp ----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred ----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 1234699999999999999999977555 578999999
Q ss_pred ChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCC---------CccchhhhhcccccCC--CceeEEEE
Q 008443 409 NQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---------TVEDYVHRIGRTGRGG--SMGQATSF 477 (565)
Q Consensus 409 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~---------s~~~~~Q~~GRagR~g--~~g~~~~~ 477 (565)
++.+|+.+++.|++|+++|||||+++++|||+|+ ..||+.+.+. ++..|+||+|||||.| ..|.|+++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 5566655554 9999999999999998 46888888
Q ss_pred ec--cccHHHHHH
Q 008443 478 YT--DRDMLLVAQ 488 (565)
Q Consensus 478 ~~--~~d~~~~~~ 488 (565)
+. ..+...++.
T Consensus 489 ~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 489 AYNSPLSIATFKE 501 (997)
T ss_dssp CCSSCCCHHHHHH
T ss_pred cCCCcchHHHHHH
Confidence 73 234444443
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.2e-40 Score=385.58 Aligned_cols=349 Identities=15% Similarity=0.203 Sum_probs=255.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
|.+..++.+...+|..++|+|.++++.++++ ++++++||||+|||++|.++++..+.+. .+.++|||+|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 4456778888889999999999999999865 5799999999999999999999988764 36689999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC--CCCCCceEEEecchhhhhhC
Q 008443 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (565)
Q Consensus 207 ~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~iIiDE~H~~~~~ 284 (565)
+.|.++.|++.++...++.++.++|+...... ...+++|+||||++|..++.... ..++++++|||||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 99999999988765447889999888654332 22458999999999977665432 34678999999999988764
Q ss_pred CCHHHHHHHH-------HhCCCCCeEEEEeccccHHHHHHHHhhcCCCe-EEEecCcCCCCCceEEEEEEeccchHHHHH
Q 008443 285 GFEPQIREVM-------QNLPDKHQTLLFSATMPVEIEALAQGYLTDPV-QVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (565)
Q Consensus 285 ~~~~~~~~i~-------~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 356 (565)
.+..+..++ ...+++.|+|++|||+++. ..++..+..... ...+..... +..+...+...........+
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~R-PvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVR-PVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGC-SSCEEEEEEEECCCSHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCC-CCCeEEEEEeccCCCchhhh
Confidence 555554443 3456788999999999753 334443332222 222222222 22233222222222221111
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC----------------------------------CCceE
Q 008443 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------------------GLHAV 402 (565)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~----------------------------------~~~~~ 402 (565)
.. +.+..........+.+++||||+++..|+.++..|... ...++
T Consensus 1139 ~~-~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1139 LS-MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HT-THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred hh-hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEE
Confidence 11 11111111111233457999999999998887766431 23588
Q ss_pred EecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cC------CCCCccchhhhhcccccCCC--
Q 008443 403 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD------LPKTVEDYVHRIGRTGRGGS-- 470 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~------~~~s~~~~~Q~~GRagR~g~-- 470 (565)
.+|+++++.+|..+++.|++|.++|||||+++++|||+|.+.+||. +| .|.++.+|+||+|||||.|.
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 1297 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD 1297 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCC
Confidence 9999999999999999999999999999999999999999888884 22 25688999999999999986
Q ss_pred ceeEEEEeccccHHHHHHH
Q 008443 471 MGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 471 ~g~~~~~~~~~d~~~~~~l 489 (565)
.|.|++++...+...++++
T Consensus 1298 ~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1298 EGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CEEEEEEEEGGGHHHHHHH
T ss_pred ceEEEEEecchHHHHHHHH
Confidence 6999999998887766554
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7e-40 Score=372.74 Aligned_cols=323 Identities=18% Similarity=0.179 Sum_probs=247.5
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhc----CC--CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 127 CLHPSIMKDIE-FHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 127 ~l~~~l~~~l~-~~~~~~~~~~Q~~al~~l~~----~~--~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
++++...+.+. .++| ++|++|.+|++.++. ++ ++|++++||+|||++|+++++..+. .+++++|
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEEE
Confidence 45566666664 4455 579999999999886 66 8999999999999999777766543 3778999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH---H-hCCCeEEEECchHHHHHHHcCCCCCCCceEEEe
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIi 275 (565)
++||++|+.|++++|++++... ++.+..+++.....+.... + .+.++|+|+||+.+. ....+.++++|||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 9999999999999999988764 5778888877665544322 2 346999999998664 3467889999999
Q ss_pred cchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHH
Q 008443 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (565)
Q Consensus 276 DE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (565)
||+|++. .....++..++.+.++++|||||...........+.+...+... ......+......... ..
T Consensus 732 DEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~----~~ 800 (1151)
T 2eyq_A 732 DEEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDS----MV 800 (1151)
T ss_dssp ESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCH----HH
T ss_pred echHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCH----HH
Confidence 9999953 33455666666778999999999766655555444432222111 1111223332222221 22
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc
Q 008443 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (565)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 433 (565)
+...+..... .+++++|||+++..++.+++.|.+. ++.+..+||+|++.+|+.++++|++|+++|||||++
T Consensus 801 i~~~il~~l~-------~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v 873 (1151)
T 2eyq_A 801 VREAILREIL-------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp HHHHHHHHHT-------TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred HHHHHHHHHh-------cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 2333333222 2346999999999999999999987 889999999999999999999999999999999999
Q ss_pred cccCCCccCccEEEEcCC-CCCccchhhhhcccccCCCceeEEEEecccc
Q 008443 434 ASRGLDVMGVAHVVNLDL-PKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 482 (565)
Q Consensus 434 ~~~Gidip~v~~Vi~~~~-~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d 482 (565)
+++|+|+|++++||+++. +.++..|+||+||+||.|+.|.|++++.+.+
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999998 4688999999999999999999999987653
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.6e-40 Score=347.33 Aligned_cols=322 Identities=19% Similarity=0.235 Sum_probs=226.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
.|. .|+++|..+++.++.|+ +..++||+|||++|++|++...+. |++++||+||++||.|..+.+..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 464 89999999999999998 999999999999999999865542 6679999999999999999999999
Q ss_pred hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCCCceEEEecchhhhh-hCC-----
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG----- 285 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~H~~~-~~~----- 285 (565)
... ++.+++++||....... ...+++|+||||++| ++++..+. ..++++.++||||||+++ +.+
T Consensus 140 ~~l-gl~v~~i~GG~~~~~r~--~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 140 EFL-GLTVGINLPGMPAPAKR--EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHT-TCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred Hhc-CCeEEEEeCCCCHHHHH--HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 876 68999999998865433 334589999999999 78887552 567889999999999988 443
Q ss_pred ----------CHHHHHHHHHhCCC--------------------CCeEE------------------------EEecccc
Q 008443 286 ----------FEPQIREVMQNLPD--------------------KHQTL------------------------LFSATMP 311 (565)
Q Consensus 286 ----------~~~~~~~i~~~~~~--------------------~~~~l------------------------~~SAT~~ 311 (565)
+...+..|+..+++ ..|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 45666777777653 34443 7899864
Q ss_pred HH---HHHHH--HhhcCC---------------------------------C----eEEEecCcC---------------
Q 008443 312 VE---IEALA--QGYLTD---------------------------------P----VQVKVGKVS--------------- 334 (565)
Q Consensus 312 ~~---~~~~~--~~~~~~---------------------------------~----~~~~~~~~~--------------- 334 (565)
.. +...+ ..++.. + ..+.+....
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 31 11100 011100 0 000000000
Q ss_pred -------------------------------CCCCceE-EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEc
Q 008443 335 -------------------------------SPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (565)
Q Consensus 335 -------------------------------~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~ 382 (565)
.+..... +.........|...++..+...... +.++||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~-------gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAK-------GQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTT-------TCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcC-------CCCEEEEEC
Confidence 0000000 0123345566777777666543321 235999999
Q ss_pred chhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCc-------------------
Q 008443 383 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------- 443 (565)
Q Consensus 383 ~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v------------------- 443 (565)
+++.++.+++.|...|+++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999888888888999988 599999999999999973
Q ss_pred ------------------cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccH
Q 008443 444 ------------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 483 (565)
Q Consensus 444 ------------------~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~ 483 (565)
.+||+++.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999988774
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.4e-39 Score=339.15 Aligned_cols=325 Identities=18% Similarity=0.228 Sum_probs=254.2
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ .|+++|..+++.++.|+ |..++||+|||++|++|++...+. |+.++||+||++||.|..+.+..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4687 99999999999999998 999999999999999999765553 567999999999999999999999
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcC------CCCCCCceEEEecchhhhh-hC-----
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM----- 284 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~-~~----- 284 (565)
+..+ ++.+++++||......... .+++|+++||+.| ++++..+ ...++.+.++||||||.++ +.
T Consensus 176 ~~~l-GLsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 176 HRFL-GLQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHT-TCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 8876 7999999999886554333 3589999999999 7887764 3567789999999999988 42
Q ss_pred ----------CCHHHHHHHHHhCC---------CCCeEE-----------------EEeccccH---HHHHHH--HhhcC
Q 008443 285 ----------GFEPQIREVMQNLP---------DKHQTL-----------------LFSATMPV---EIEALA--QGYLT 323 (565)
Q Consensus 285 ----------~~~~~~~~i~~~~~---------~~~~~l-----------------~~SAT~~~---~~~~~~--~~~~~ 323 (565)
++...+..|+..++ +..|++ ++|||.+. .+...+ ..++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 36778889999997 577888 88999753 222211 11111
Q ss_pred -CC-------eEEEecC---------------------------------------------------------------
Q 008443 324 -DP-------VQVKVGK--------------------------------------------------------------- 332 (565)
Q Consensus 324 -~~-------~~~~~~~--------------------------------------------------------------- 332 (565)
+. ..+.+..
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 10 0000000
Q ss_pred ------------cCCCCCceE-EEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCC
Q 008443 333 ------------VSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (565)
Q Consensus 333 ------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~ 399 (565)
...+..... ..........|...++..+.+....+ .++||||++++.++.|++.|.+.|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~g-------qpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKG-------QPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTT-------CCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcC-------CcEEEEECCHHHHHHHHHHHHHCCC
Confidence 000000000 11234456677777777776543222 2599999999999999999999999
Q ss_pred ceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCc------------------------------------
Q 008443 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------ 443 (565)
Q Consensus 400 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v------------------------------------ 443 (565)
++..+||+..+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999998877887788888888 599999999999999975
Q ss_pred ----------------cEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 444 ----------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 444 ----------------~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
.+||+++.|.|...|.|+.||+||.|.+|.++.|++..|...
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 499999999999999999999999999999999999887643
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.8e-40 Score=352.41 Aligned_cols=312 Identities=16% Similarity=0.152 Sum_probs=230.4
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.+|++.++.+++++++++||+|||++|+.++...+.. .++++|||+|+++|+.|+.++|+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 48999999999999999999999999999999998777665543 2448999999999999999999887433
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
+...+..+.|+....+. .....+|+|+|++.|... ....+.++++|||||+|++.. ..+..++..+.+..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 34677888887655443 446799999999987632 224567899999999999874 56788888887788
Q ss_pred eEEEEeccccHHHHHHH--HhhcCCCeEEEecCc------CCCCCceEEEEEEeccc---------------------hH
Q 008443 302 QTLLFSATMPVEIEALA--QGYLTDPVQVKVGKV------SSPTANVIQILEKVSEN---------------------EK 352 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------------------~~ 352 (565)
+++++||||+....... ..++. +..+..... ......+.......... .+
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 89999999976532211 11222 111111110 01111122222222111 11
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEec-
Q 008443 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT- 431 (565)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T- 431 (565)
...+...+..... ....++||||+ ..+++.+++.|.+.+..+..+||+++..+|+++++.|++|+++|||||
T Consensus 333 ~~~l~~~l~~~~~------~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 333 NKWIAKLAIKLAQ------KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HHHHHHHHHHHHT------TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred HHHHHHHHHHHHh------cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 1122222222211 11224566665 899999999999998899999999999999999999999999999999
Q ss_pred cccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEec
Q 008443 432 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 432 ~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~ 479 (565)
+++++|+|+|++++||++++|+++..|+|++||+||.|+.|.++++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999999875555555
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9e-40 Score=381.78 Aligned_cols=342 Identities=19% Similarity=0.258 Sum_probs=247.6
Q ss_pred CCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCC---CCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---GRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~-~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~---~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
.||..|+++|.++++.++ .++++|++||||+|||++|.++++..+.+.... ....+.++|||+|+++|+.|..+.|
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 378999999999999877 467899999999999999999999988764321 1235789999999999999999999
Q ss_pred HHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC--CCCCCceEEEecchhhhhhCCCHHHHHH
Q 008443 215 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIRE 292 (565)
Q Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~iIiDE~H~~~~~~~~~~~~~ 292 (565)
++.+... ++.++.++|+...... ...+++|+||||+++..++.... ..++++++|||||+|.+.+ +.+..+..
T Consensus 155 ~~~~~~~-gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 155 GKRLATY-GITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHTTT-TCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHhhC-CCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 9998875 6899999998764331 12458999999999865554432 2367899999999997765 46666554
Q ss_pred HHH-------hCCCCCeEEEEeccccHHHHHHHHhhcCC-C-e-EEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHH
Q 008443 293 VMQ-------NLPDKHQTLLFSATMPVEIEALAQGYLTD-P-V-QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (565)
Q Consensus 293 i~~-------~~~~~~~~l~~SAT~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 362 (565)
++. ..++..|+|++|||+++. +.++. ++.. + . ...+..... +..+.+.+......... .....+..
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~-wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~~~~-~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNY-EDVAT-FLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEKKAI-KRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHH-HTTCCHHHHEEECCGGGC-SSCEEEECCEECCCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHH-HhCCCCCCCeEEECCCCc-cCccEEEEeccCCcchh-hhhHHHHH
Confidence 443 346788999999999753 33443 3332 1 1 111221111 22233333222222211 11122222
Q ss_pred HHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-------------------------------------CCceEEec
Q 008443 363 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------GLHAVALH 405 (565)
Q Consensus 363 ~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-------------------------------------~~~~~~~~ 405 (565)
............+++||||++++.|+.+++.|.+. ...++.+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 22222222233457999999999999888877541 23578999
Q ss_pred CCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----cCC------CCCccchhhhhcccccCCC--cee
Q 008443 406 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LDL------PKTVEDYVHRIGRTGRGGS--MGQ 473 (565)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~----~~~------~~s~~~~~Q~~GRagR~g~--~g~ 473 (565)
|+|++++|..+++.|++|.++|||||++++.|||+|.+++||. +++ |.++.+|+||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999985 443 4588999999999999874 699
Q ss_pred EEEEeccccHHHHHHH
Q 008443 474 ATSFYTDRDMLLVAQI 489 (565)
Q Consensus 474 ~~~~~~~~d~~~~~~l 489 (565)
+++++...+......+
T Consensus 466 ~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 466 GILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEEESTTCCHHHHH
T ss_pred EEEEecchhHHHHHHH
Confidence 9999988776554443
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-39 Score=341.74 Aligned_cols=289 Identities=20% Similarity=0.224 Sum_probs=213.0
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.++++.++.+++++++++||+|||++|+.++... ++++|||+|+++|+.||.++|++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~-~--- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGI-F--- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGG-G---
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHh-C---
Confidence 47999999999999999899999999999999997766543 45699999999999999999998 4
Q ss_pred CCce-EEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCC
Q 008443 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
++. ++.+.|+.. ...+|+|+|++.+...... ...++++|||||+|++.+.+|. .++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~----~~~~~~~-~ 218 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-A 218 (472)
T ss_dssp -CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTH----HHHHTCC-C
T ss_pred -CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHH----HHHHhcC-C
Confidence 456 777777753 3478999999999766542 1246999999999999887764 4566665 5
Q ss_pred CeEEEEeccccHH-------------------HHHHHHhhcCCCeEE--EecCcCC------------------------
Q 008443 301 HQTLLFSATMPVE-------------------IEALAQGYLTDPVQV--KVGKVSS------------------------ 335 (565)
Q Consensus 301 ~~~l~~SAT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~------------------------ 335 (565)
.++|++||||.+. ...+...++.++... .+.....
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 6799999999732 112211222211110 0000000
Q ss_pred CCCceEEEE---------------------EEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHH
Q 008443 336 PTANVIQIL---------------------EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (565)
Q Consensus 336 ~~~~~~~~~---------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l 394 (565)
....+...+ .......+...+.+.+.. ....++||||+++..++.+++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---------~~~~k~lvF~~~~~~~~~l~~~l 369 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---------HRKDKIIIFTRHNELVYRISKVF 369 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---------TSSSCBCCBCSCHHHHHHHHHHT
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHHh
Confidence 000000000 000112233333333332 23347999999999999999988
Q ss_pred HHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCc-ee
Q 008443 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM-GQ 473 (565)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~-g~ 473 (565)
. +..+||+++..+|+++++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+|++||+||.|+. +.
T Consensus 370 ~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~ 444 (472)
T 2fwr_A 370 L-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKE 444 (472)
T ss_dssp T-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCC
T ss_pred C-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCce
Confidence 3 56799999999999999999999999999999999999999999999999999999999999999999965 45
Q ss_pred EEEE
Q 008443 474 ATSF 477 (565)
Q Consensus 474 ~~~~ 477 (565)
++++
T Consensus 445 ~~i~ 448 (472)
T 2fwr_A 445 AVLY 448 (472)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.2e-40 Score=353.97 Aligned_cols=314 Identities=15% Similarity=0.178 Sum_probs=227.6
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
+++++.+++.+... ...++|+|+.+++.++++++++++++||||||++|+++++..+.. .++++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 44555555544432 367888888889999999999999999999999999999988776 3678999999999
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC
Q 008443 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 206 L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
|+.|+.+.++. ..+. +.+.... .....+..+.++|.+.+...+... ..+.++++|||||||++ +.+
T Consensus 227 La~Qi~~~l~~-------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 227 VAAEMEEALRG-------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHHHHHHHTTT-------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHH
T ss_pred HHHHHHHHhcC-------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Ccc
Confidence 99999987762 2222 2221100 011133557788888887666544 45788999999999997 445
Q ss_pred CHHHHHHHHHhCC-CCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHH
Q 008443 286 FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEA 364 (565)
Q Consensus 286 ~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 364 (565)
+...+..++..++ ++.|+++||||++.....+.. .++..+.+... ... .+...++..+.+.
T Consensus 293 ~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~-~~~~~ll~~l~~~- 354 (618)
T 2whx_A 293 SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE-RSWNTGFDWITDY- 354 (618)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS-SCCSSSCHHHHHC-
T ss_pred HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH-HHHHHHHHHHHhC-
Confidence 6666666666654 578999999999765332111 11111211110 000 1111122222211
Q ss_pred HhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCcc
Q 008443 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (565)
Q Consensus 365 ~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~ 444 (565)
.+++||||+++++|+.+++.|.+.++.+..+||. +|.++++.|++|+++|||||+++++|+|+| ++
T Consensus 355 ---------~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 355 ---------QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp ---------CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred ---------CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 2369999999999999999999999999999984 788999999999999999999999999998 99
Q ss_pred EE--------------------EEcCCCCCccchhhhhcccccCCC-ceeEEEEec---cccHHHHHHHHHHH
Q 008443 445 HV--------------------VNLDLPKTVEDYVHRIGRTGRGGS-MGQATSFYT---DRDMLLVAQIKKAI 493 (565)
Q Consensus 445 ~V--------------------i~~~~~~s~~~~~Q~~GRagR~g~-~g~~~~~~~---~~d~~~~~~l~~~~ 493 (565)
+| |+++.|.+..+|+||+||+||.|. .|.+++++. +.|...+..+++.+
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 88 677779999999999999999965 899999997 77777777777664
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.5e-38 Score=343.20 Aligned_cols=340 Identities=19% Similarity=0.239 Sum_probs=249.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCe
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~-~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~ 196 (565)
.++..|.++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||+|||++ ++++...... ..+.+++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~---~~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEM---PHLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHC---GGGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhcc---ccCCCce
Confidence 45678999999999999999888 7889999999988775 45799999999999993 5554221111 0112667
Q ss_pred EEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 197 ~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
+++++|+++|+.|+.+.+...++......++....... ....+.+|+++|++.+.+.+... ..+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 99999999999999988877654322233332222111 11246889999999998877654 458899999999
Q ss_pred chhh-hhhCC-CHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHH
Q 008443 277 EADR-MLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (565)
Q Consensus 277 E~H~-~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (565)
|+|. ..+.+ ....+..+.... ++.+++++|||++.+ . +..++.....+.+.... ..+...+......+...
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHH
T ss_pred CccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--H-HHHHhcCCCcccccCcc---cceEEEEecCCchhHHH
Confidence 9995 44422 223344555444 478899999999643 2 33455544444433222 22333333333344444
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH-----------CCCceEEecCCCChhhHHHHHHhhh--
Q 008443 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-----------EGLHAVALHGGRNQSDRESALRDFR-- 421 (565)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-- 421 (565)
..+..+...... ...+++||||+++.+++.+++.|.+ .++.+..+||++++++|..+++.|.
T Consensus 289 ~~l~~l~~~~~~-----~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 289 SAIRTVLQIHAT-----EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp HHHHHHHHHHHH-----SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred HHHHHHHHHHHh-----cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 444444433222 1234799999999999999999985 5788999999999999999999999
Q ss_pred ---cCCeeEEEeccccccCCCccCccEEEEcCC------------------CCCccchhhhhcccccCCCceeEEEEecc
Q 008443 422 ---NGSTNILVATDVASRGLDVMGVAHVVNLDL------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTD 480 (565)
Q Consensus 422 ---~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~------------------~~s~~~~~Q~~GRagR~g~~g~~~~~~~~ 480 (565)
+|+.+|||||+++++|||+|+|++||+++. |.|...|+||+|||||. .+|.|+.+++.
T Consensus 364 ~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 364 HNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp SSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred cCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 999999999999999999999999999887 88999999999999999 78999999987
Q ss_pred ccH
Q 008443 481 RDM 483 (565)
Q Consensus 481 ~d~ 483 (565)
.+.
T Consensus 443 ~~~ 445 (773)
T 2xau_A 443 EAF 445 (773)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.6e-39 Score=332.53 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=209.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCE-EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 140 EYTRPTSIQAQAMPVALSGRDL-LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 140 ~~~~~~~~Q~~al~~l~~~~~~-lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
|+.+++|+|+ +++.+++++++ ++++|||||||++|+++++..+.. .++++||++|+++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcC--
Confidence 5678899985 79999998886 999999999999999999887766 367899999999999999988742
Q ss_pred hcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHH-HhC
Q 008443 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM-QNL 297 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~-~~~ 297 (565)
..+......... ....+..|.++|++.+.+.+... ..+.++++|||||+|++ +..+......+. ...
T Consensus 71 -----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 71 -----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 138 (451)
T ss_dssp -----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH
T ss_pred -----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc
Confidence 223222221110 11234678999999998777654 55788999999999976 222222222222 223
Q ss_pred CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeE
Q 008443 298 PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLT 377 (565)
Q Consensus 298 ~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 377 (565)
.++.|+++||||++..... .+...+..+.... ..+.... ..+...+.+ ..+++
T Consensus 139 ~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~-~~p~~~~-------------~~~~~~l~~----------~~~~~ 191 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDP---FPQSNSPIEDIER-EIPERSW-------------NTGFDWITD----------YQGKT 191 (451)
T ss_dssp TTSCEEEEECSSCTTCCCS---SCCCSSCEEEEEC-CCCSSCC-------------SSSCHHHHH----------CCSCE
T ss_pred CCCceEEEEccCCCccchh---hhcCCCceEecCc-cCCchhh-------------HHHHHHHHh----------CCCCE
Confidence 4578999999999753221 1222222222110 0000000 001111111 12369
Q ss_pred EEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcC-------
Q 008443 378 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD------- 450 (565)
Q Consensus 378 lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~------- 450 (565)
||||+++.+|+.+++.|...++.+..+|+++ ++.+++.|++|+++|||||+++++|+|+|+ ++||++|
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 9999999999999999999999999999965 467999999999999999999999999999 9999998
Q ss_pred -------------CCCCccchhhhhcccccCCC-ceeEEEEecc
Q 008443 451 -------------LPKTVEDYVHRIGRTGRGGS-MGQATSFYTD 480 (565)
Q Consensus 451 -------------~~~s~~~~~Q~~GRagR~g~-~g~~~~~~~~ 480 (565)
.|.+...|+||+||+||.|+ .|.+++++..
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 7888888754
No 46
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-36 Score=289.80 Aligned_cols=237 Identities=43% Similarity=0.724 Sum_probs=212.9
Q ss_pred CHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCch
Q 008443 92 NPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGK 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGK 171 (565)
++++++.++...++.+.. ...|.++.+|.++++++.+++.+.+.|+..|+++|.++++.++.|+++++.+|||+||
T Consensus 4 ~~~~~~~~~~~~~i~~~~----~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGK 79 (242)
T 3fe2_A 4 TAQEVETYRRSKEITVRG----HNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK 79 (242)
T ss_dssp --CHHHHHHHHHTEEEES----SCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCH
T ss_pred CHHHHHHHHhcCceEEeC----CCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHH
Confidence 456788888888777752 3568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEE
Q 008443 172 TAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 251 (565)
Q Consensus 172 T~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~ 251 (565)
|++|+++++..+..........++++|||+|+++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+
T Consensus 80 T~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 80 TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 99999999998876554444568899999999999999999999998765 68889999999988887788888999999
Q ss_pred CchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEec
Q 008443 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVG 331 (565)
Q Consensus 252 T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
||++|.+.+......+.++++|||||||++.+.+|...+..++..++++.|++++|||++..+..++..++.++..+.++
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999888876
Q ss_pred Cc
Q 008443 332 KV 333 (565)
Q Consensus 332 ~~ 333 (565)
..
T Consensus 239 ~~ 240 (242)
T 3fe2_A 239 AL 240 (242)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5e-38 Score=338.95 Aligned_cols=317 Identities=18% Similarity=0.174 Sum_probs=197.8
Q ss_pred CCCCHHHHHHHHHHhc----C-CCEEEEccCCCchHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEcCchhhHHHHH-HH
Q 008443 142 TRPTSIQAQAMPVALS----G-RDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIE-KE 213 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~----~-~~~lv~a~TGsGKT~~~~l~~~~~~~~~~--~~~~~~~~~~Lil~P~~~L~~Q~~-~~ 213 (565)
..|+++|.+|++.++. + ++++++++||+|||+++ +.++..++... ......++++|||+|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999999875 4 56899999999999997 56666665532 011124688999999999999998 77
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHH----cCCCCCCCceEEEecchhhhhhCCCHHH
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ----QGNTSLSRVSFVILDEADRMLDMGFEPQ 289 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~----~~~~~~~~~~~iIiDE~H~~~~~~~~~~ 289 (565)
|+.+. .....+.++ ....+.+|+|+|+++|..... ...+....+++|||||||++...+ ...
T Consensus 256 ~~~~~-----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 256 FTPFG-----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CTTTC-----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHhcc-----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 76543 223333333 334568999999999987654 223556789999999999987542 245
Q ss_pred HHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEE------------------EecCcCCCCCce-----------
Q 008443 290 IREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQV------------------KVGKVSSPTANV----------- 340 (565)
Q Consensus 290 ~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~----------- 340 (565)
+..++..++. .++|++||||..........++..+... .+.. .......
T Consensus 322 ~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 399 (590)
T 3h1t_A 322 WREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVIS-EVDAAGWRPSKGDVDRFG 399 (590)
T ss_dssp CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEE-TTCC--------------
T ss_pred HHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeee-eeeccccccccccccccc
Confidence 6788888864 5799999999743322222233322211 1100 0000000
Q ss_pred ---EEEEEEec-------cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCc--------eE
Q 008443 341 ---IQILEKVS-------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH--------AV 402 (565)
Q Consensus 341 ---~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~--------~~ 402 (565)
........ ...+...+...+.+..... .+.+++||||+++.+|+.+++.|.+.+.. +.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~----~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 400 REIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT----DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp ---------CCSHHHHHHHHHTHHHHHHHHHHHHHHH----CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc----CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 00000000 0112222333333322211 34458999999999999999999876543 77
Q ss_pred EecCCCChhhHHHHHHhhhcCCee---EEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCC--ceeEEEE
Q 008443 403 ALHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS--MGQATSF 477 (565)
Q Consensus 403 ~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~--~g~~~~~ 477 (565)
.+||.++. +|+.++++|++|+.+ |||||+++++|+|+|++++||++++|+|...|+|++||+||.+. .+..+++
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 88998753 799999999998876 89999999999999999999999999999999999999999875 4444445
Q ss_pred ecc
Q 008443 478 YTD 480 (565)
Q Consensus 478 ~~~ 480 (565)
++-
T Consensus 555 ~D~ 557 (590)
T 3h1t_A 555 IDY 557 (590)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.8e-38 Score=333.13 Aligned_cols=280 Identities=23% Similarity=0.260 Sum_probs=210.1
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..++++|+++++.+..++++++.|+||+|||++|.+++++. +.++||++|+++|+.|+.+.+.+.++
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~g-- 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHG-- 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHHS--
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHhC--
Confidence 34566777777777788899999999999999988776652 56899999999999999998887764
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
..+...+|+.. ...+.+|+|+||++|+ ....+.++++++|||||+|++ +.++...+..++..++...
T Consensus 283 --~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 283 --IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp --CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTT
T ss_pred --CCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcC
Confidence 34556666643 3567899999999984 455677888999999999754 4556777888888887665
Q ss_pred e--EEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 008443 302 Q--TLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 302 ~--~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lv 379 (565)
+ ++++|||++..+. ...+....+.... ..... ........ .....+++||
T Consensus 350 ~~llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~i~---~~~~~~~l----------------~~~~~~~vLV 401 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT------VPHPNIEEVALSN---TGEIP---FYGKAIPI----------------EAIRGGRHLI 401 (666)
T ss_dssp CSEEEEEESSCTTCCC------CCCTTEEEEECBS---CSSEE---ETTEEECG----------------GGSSSSEEEE
T ss_pred CceEEEECCCCCcccc------cCCcceEEEeecc---cchhH---HHHhhhhh----------------hhccCCcEEE
Confidence 5 7888999986311 0111111110000 00000 00000000 0013447999
Q ss_pred EEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEE----------Ec
Q 008443 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----------NL 449 (565)
Q Consensus 380 F~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi----------~~ 449 (565)
||++++.++.+++.|.+.++.+..+||++++++ |+++..+|||||+++++|||+| +++|| +|
T Consensus 402 Fv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNy 473 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDF 473 (666)
T ss_dssp ECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEEC
T ss_pred EeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccc
Confidence 999999999999999999999999999999875 4556669999999999999997 99998 56
Q ss_pred C-----------CCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 450 D-----------LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 450 ~-----------~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
| .|.+...|+||+||+|| |+.|. +.|+.+.+...
T Consensus 474 DydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 474 SLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 6 79999999999999999 88899 88888776544
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.7e-39 Score=335.89 Aligned_cols=279 Identities=18% Similarity=0.246 Sum_probs=190.7
Q ss_pred HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCC
Q 008443 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~ 233 (565)
.+++|+++|++||||||||++|+++++..+.. +++++||++||++|+.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccc
Confidence 35688999999999999999999999987765 3678999999999999999887633 222221110
Q ss_pred cHHHHHHHHhCCCeEEEECchHHHH--------HHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC-CCCCeEE
Q 008443 234 NIAEQRSELRGGVSIVVATPGRFLD--------HLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTL 304 (565)
Q Consensus 234 ~~~~~~~~~~~~~~Ilv~T~~~l~~--------~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~-~~~~~~l 304 (565)
. .++||+.+.+ ........+.++++|||||+|++ +.++...+..+.... +.+.|++
T Consensus 70 ~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 70 S--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp C--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred e--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 0 2566654421 12223345789999999999997 222222222222221 3568999
Q ss_pred EEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcch
Q 008443 305 LFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK 384 (565)
Q Consensus 305 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~ 384 (565)
+||||++..+..+.. .. ..+......+.... ...++..+.+. .+++||||+++
T Consensus 135 ~~SAT~~~~~~~~~~----~~------------~~~~~~~~~~~~~~-~~~~~~~l~~~----------~~~~lVF~~s~ 187 (440)
T 1yks_A 135 LMTATPPGTSDEFPH----SN------------GEIEDVQTDIPSEP-WNTGHDWILAD----------KRPTAWFLPSI 187 (440)
T ss_dssp EECSSCTTCCCSSCC----CS------------SCEEEEECCCCSSC-CSSSCHHHHHC----------CSCEEEECSCH
T ss_pred EEeCCCCchhhhhhh----cC------------CCeeEeeeccChHH-HHHHHHHHHhc----------CCCEEEEeCCH
Confidence 999999754322111 10 01111111111111 11112222211 23699999999
Q ss_pred hhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE----------------
Q 008443 385 TRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN---------------- 448 (565)
Q Consensus 385 ~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~---------------- 448 (565)
+.|+.+++.|...++.+..+|| ++|..+++.|++|+++|||||+++++|+|+| +++||+
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~ 262 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKV 262 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccce
Confidence 9999999999999999999999 4688999999999999999999999999999 999986
Q ss_pred ---cCCCCCccchhhhhcccccC-CCceeEEEEe---ccccHHHHHHHHHHH
Q 008443 449 ---LDLPKTVEDYVHRIGRTGRG-GSMGQATSFY---TDRDMLLVAQIKKAI 493 (565)
Q Consensus 449 ---~~~~~s~~~~~Q~~GRagR~-g~~g~~~~~~---~~~d~~~~~~l~~~~ 493 (565)
++.|.+...|+||+||+||. |+.|.|++++ ++.+...+..++..+
T Consensus 263 vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 263 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88899999999999999997 6889999996 567777777776654
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7.2e-38 Score=336.48 Aligned_cols=305 Identities=16% Similarity=0.246 Sum_probs=210.9
Q ss_pred HHHCCCC-----CCCHHHH-----HHHHHHh------cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 136 IEFHEYT-----RPTSIQA-----QAMPVAL------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 136 l~~~~~~-----~~~~~Q~-----~al~~l~------~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
+...||. .|+++|+ ++++.++ .++++|++|+||+|||++|+++++..+.. +++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3444555 8999999 9999888 89999999999999999999999988765 3678999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchh
Q 008443 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H 279 (565)
++||++|+.|+.+.++.+ .+ ....+... .....+.-+-+.+.+.+.+.+... ..+.++++|||||+|
T Consensus 276 laPTr~La~Q~~~~l~~~-----~i--~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL-----PV--RYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp EESSHHHHHHHHHHTTTS-----CC--EECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred EccHHHHHHHHHHHHhcC-----Ce--eeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 999999999999887643 11 11111100 000111223444555555444443 568899999999999
Q ss_pred hhhhCCCHHHHHHHHHhC-CCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHH
Q 008443 280 RMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (565)
Q Consensus 280 ~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (565)
++. ..+...+..+.... +...|+++||||++..+..+. .. ...+........... ...++.
T Consensus 343 ~~~-~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~----~~------------~~~i~~v~~~~~~~~-~~~~l~ 404 (673)
T 2wv9_A 343 FTD-PASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFP----DT------------NSPVHDVSSEIPDRA-WSSGFE 404 (673)
T ss_dssp CCC-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC----CC------------SSCEEEEECCCCSSC-CSSCCH
T ss_pred ccC-ccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhc----cc------------CCceEEEeeecCHHH-HHHHHH
Confidence 871 11112222222222 256899999999975422111 10 001111111111111 111112
Q ss_pred HHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCC
Q 008443 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (565)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 438 (565)
.+.+ ..+++||||+++++++.+++.|...++.+..+|| ++|+.+++.|++|+++|||||+++++||
T Consensus 405 ~l~~----------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GI 470 (673)
T 2wv9_A 405 WITD----------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGA 470 (673)
T ss_dssp HHHS----------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTC
T ss_pred HHHh----------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcce
Confidence 2211 1346999999999999999999999999999999 3799999999999999999999999999
Q ss_pred CccCccEEEE--------------------cCCCCCccchhhhhcccccC-CCceeEEEEe---ccccHHHHHHHHHHH
Q 008443 439 DVMGVAHVVN--------------------LDLPKTVEDYVHRIGRTGRG-GSMGQATSFY---TDRDMLLVAQIKKAI 493 (565)
Q Consensus 439 dip~v~~Vi~--------------------~~~~~s~~~~~Q~~GRagR~-g~~g~~~~~~---~~~d~~~~~~l~~~~ 493 (565)
|+| +++||+ +|.|.+...|+||+||+||. |+.|.|++++ +..|...+..++..+
T Consensus 471 Dip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 471 NFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 999 999998 56889999999999999998 7899999996 566766666665544
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.8e-37 Score=321.17 Aligned_cols=278 Identities=17% Similarity=0.259 Sum_probs=193.3
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceE
Q 008443 147 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (565)
Q Consensus 147 ~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~ 226 (565)
+|......+..++++++++|||+|||++|+++++..+.. .++++||++|+++|+.|+.+.++. ..+
T Consensus 10 ~~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g-------~~v 75 (459)
T 2z83_A 10 MGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRG-------LPV 75 (459)
T ss_dssp -----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTT-------SCE
T ss_pred HHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcC-------ceE
Confidence 333444456678899999999999999999999988775 367899999999999999988762 222
Q ss_pred EEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh-----hhhCCCHHHHHHHHHhCCCCC
Q 008443 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-----MLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~-----~~~~~~~~~~~~i~~~~~~~~ 301 (565)
....+.... ....+..+.++|.+.+...+... ..+.++++|||||||+ +...++. ..+. . .++.
T Consensus 76 ~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~---~~~~-~-~~~~ 144 (459)
T 2z83_A 76 RYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYI---ATKV-E-LGEA 144 (459)
T ss_dssp EECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHH---HHHH-H-TTSC
T ss_pred eEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHH---HHHh-c-cCCc
Confidence 221111110 01234557788888887766553 5678999999999997 3332221 1111 1 2578
Q ss_pred eEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEE
Q 008443 302 QTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (565)
Q Consensus 302 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~ 381 (565)
|+++||||++..+..+... ..++.... ..... .....+...+.+ ..+++||||
T Consensus 145 ~~il~SAT~~~~~~~~~~~--~~pi~~~~--------------~~~~~-~~~~~~~~~l~~----------~~~~~LVF~ 197 (459)
T 2z83_A 145 AAIFMTATPPGTTDPFPDS--NAPIHDLQ--------------DEIPD-RAWSSGYEWITE----------YAGKTVWFV 197 (459)
T ss_dssp EEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCS-SCCSSCCHHHHH----------CCSCEEEEC
T ss_pred cEEEEEcCCCcchhhhccC--CCCeEEec--------------ccCCc-chhHHHHHHHHh----------cCCCEEEEe
Confidence 9999999998543211110 11111110 00100 000111112211 123699999
Q ss_pred cchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEE-------------
Q 008443 382 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN------------- 448 (565)
Q Consensus 382 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~------------- 448 (565)
+++..|+.+++.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 198 ~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~ 272 (459)
T 2z83_A 198 ASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEG 272 (459)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSS
T ss_pred CChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccc
Confidence 99999999999999999999999984 6888999999999999999999999999999 99999
Q ss_pred -------cCCCCCccchhhhhcccccCCC-ceeEEEEeccc
Q 008443 449 -------LDLPKTVEDYVHRIGRTGRGGS-MGQATSFYTDR 481 (565)
Q Consensus 449 -------~~~~~s~~~~~Q~~GRagR~g~-~g~~~~~~~~~ 481 (565)
+|.|.+...|+||+||+||.|. .|.+++++...
T Consensus 273 ~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 273 EGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999875
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.2e-36 Score=336.25 Aligned_cols=332 Identities=18% Similarity=0.171 Sum_probs=222.7
Q ss_pred CCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..|+|+|.+++..+... .++|++++||+|||++++. ++..+.... ...++|||||+ .|+.||.+++.+.++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~-~i~~l~~~g-----~~~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM-ILHQQLLSG-----AAERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHH-HHHHHHHTS-----SCCCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHH-HHHHHHHhC-----CCCeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 47999999999988764 4689999999999999854 444444431 24579999999 999999999988872
Q ss_pred cCCCceEEEEECCCcHHHHHH--HHhCCCeEEEECchHHHHHHHc-CCCCCCCceEEEecchhhhhhCCCH--HHHHHHH
Q 008443 220 SLDSFKTAIVVGGTNIAEQRS--ELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFE--PQIREVM 294 (565)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~iIiDE~H~~~~~~~~--~~~~~i~ 294 (565)
+.+..+.++........ ......+|+|+|++.+...... ..+...++++|||||||++.+.+.. ..+..+.
T Consensus 225 ----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 225 ----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ----CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 44444444322111110 1113578999999988532111 1133457999999999999754421 1223333
Q ss_pred HhCCCCCeEEEEeccccHH----HHHH----------------------------HHhhcCC------------------
Q 008443 295 QNLPDKHQTLLFSATMPVE----IEAL----------------------------AQGYLTD------------------ 324 (565)
Q Consensus 295 ~~~~~~~~~l~~SAT~~~~----~~~~----------------------------~~~~~~~------------------ 324 (565)
.......+++++||||... +..+ ...+...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 2222344599999999420 0000 0000000
Q ss_pred ----------------------------------CeEEEecC--c-CCCCCceEEEEE----------------------
Q 008443 325 ----------------------------------PVQVKVGK--V-SSPTANVIQILE---------------------- 345 (565)
Q Consensus 325 ----------------------------------~~~~~~~~--~-~~~~~~~~~~~~---------------------- 345 (565)
...+.... . ..+.........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000 0 000000000000
Q ss_pred -----------------------EeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHH-CCCce
Q 008443 346 -----------------------KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-EGLHA 401 (565)
Q Consensus 346 -----------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~-~~~~~ 401 (565)
......|...+...+.. .+..++||||+++..++.+++.|.. .|+.+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---------~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---------HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---------TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---------CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 11122344444444433 2344799999999999999999995 59999
Q ss_pred EEecCCCChhhHHHHHHhhhcCC--eeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEec
Q 008443 402 VALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 479 (565)
Q Consensus 402 ~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~ 479 (565)
..+||++++.+|+.+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.|++||+||.|+.|.|++++.
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999998777766
Q ss_pred cccHHHHHHHHHHH
Q 008443 480 DRDMLLVAQIKKAI 493 (565)
Q Consensus 480 ~~d~~~~~~l~~~~ 493 (565)
..+......+.+.+
T Consensus 612 ~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 612 YLEKTAQSVLVRWY 625 (968)
T ss_dssp EETTSHHHHHHHHH
T ss_pred cCCChHHHHHHHHH
Confidence 55444445555544
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.2e-36 Score=309.82 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=188.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (565)
+|+++|+++|||+|||++|++++++.+.. +++++||++||++|+.|+.+.+. ++.+...+|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc-
Confidence 36889999999999999998999877665 36789999999999999887765 2345544444211
Q ss_pred HHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHh-CCCCCeEEEEeccccHHHH
Q 008443 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIE 315 (565)
Q Consensus 237 ~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~ 315 (565)
....+..+.+.|.+.+.+.+.. ...+.++++|||||+|++. .++......+... .+++.++|+|||||+..+.
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~-~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD-PASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC-ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 1123455777888888766665 4568899999999999872 2222222333222 2457899999999986321
Q ss_pred HHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHH
Q 008443 316 ALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (565)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~ 395 (565)
.+.. . ...+......... .+...++..+.+ ..+++||||+++++++.+++.|.
T Consensus 140 ~~~~----~------------~~~i~~~~~~~~~-~~~~~~~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 140 AFPP----S------------NSPIIDEETRIPD-KAWNSGYEWITE----------FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp SSCC----C------------SSCCEEEECCCCS-SCCSSCCHHHHS----------CSSCEEEECSSHHHHHHHHHHHH
T ss_pred hhcC----C------------CCceeeccccCCH-HHHHHHHHHHHc----------CCCCEEEEeCCHHHHHHHHHHHH
Confidence 1100 0 0011111001111 111111222211 12369999999999999999999
Q ss_pred HCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccE-----------------EEEcCCCCCccch
Q 008443 396 AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAH-----------------VVNLDLPKTVEDY 458 (565)
Q Consensus 396 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~-----------------Vi~~~~~~s~~~~ 458 (565)
..++.+..+||+ +|+++++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+...|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 999999999986 588999999999999999999999999999 655 5778889999999
Q ss_pred hhhhcccccCCC-ceeEEEEe
Q 008443 459 VHRIGRTGRGGS-MGQATSFY 478 (565)
Q Consensus 459 ~Q~~GRagR~g~-~g~~~~~~ 478 (565)
+||+||+||.|. .|.++++.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999985 45555554
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.3e-34 Score=306.37 Aligned_cols=308 Identities=14% Similarity=0.173 Sum_probs=212.6
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~----~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+|+|.++++.+. .++++|++++||+|||+++ +.++..+.... ...++||||| .+|+.||.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~-----~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKEN-----ELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTT-----CCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcC-----CCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 368999999998874 5778999999999999997 55666555432 3467999999 57999999999998
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhC
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~ 297 (565)
+. ...+..+.|+... .....++|+|+|++++..... +....+++||+||||++.+.+. ...+.+..+
T Consensus 109 ~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l 175 (500)
T 1z63_A 109 AP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL 175 (500)
T ss_dssp CT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS
T ss_pred CC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh
Confidence 74 4566666665421 122458999999999965433 2334689999999999976542 234455555
Q ss_pred CCCCeEEEEeccccHH----HHHHH---------------------------------HhhcCCCeEEEecCcC----CC
Q 008443 298 PDKHQTLLFSATMPVE----IEALA---------------------------------QGYLTDPVQVKVGKVS----SP 336 (565)
Q Consensus 298 ~~~~~~l~~SAT~~~~----~~~~~---------------------------------~~~~~~~~~~~~~~~~----~~ 336 (565)
+. .+.+++||||..+ +..+. ..++ .+..+...... ..
T Consensus 176 ~~-~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 176 KS-KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIIND 253 (500)
T ss_dssp CE-EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTT
T ss_pred cc-CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhc
Confidence 43 4589999999431 11111 1111 12222111110 01
Q ss_pred CCceEEEEEEeccc---------------------------------------------------------hHHHHHHHH
Q 008443 337 TANVIQILEKVSEN---------------------------------------------------------EKVDRLLAL 359 (565)
Q Consensus 337 ~~~~~~~~~~~~~~---------------------------------------------------------~~~~~l~~~ 359 (565)
.+........+... .|...+.+.
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 11111122222111 111111222
Q ss_pred HHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-CCceEEecCCCChhhHHHHHHhhhcC-Cee-EEEecccccc
Q 008443 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-STN-ILVATDVASR 436 (565)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLv~T~~~~~ 436 (565)
+.+.. ..+.++||||+++..++.+++.|... ++.+..+||+++..+|.++++.|++| +.. +|++|+++++
T Consensus 334 l~~~~-------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 334 IEEAL-------DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHH-------TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHH-------ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 22111 23447999999999999999999985 99999999999999999999999998 565 7999999999
Q ss_pred CCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 437 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 437 Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
|+|+|.+++||++|+|+++..|.|++||++|.|+.+.|.++.
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~ 448 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEE
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEE
Confidence 999999999999999999999999999999999987775543
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=273.02 Aligned_cols=216 Identities=38% Similarity=0.599 Sum_probs=186.1
Q ss_pred CCCCCCCCCCCccc-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCC-C
Q 008443 112 GSVPAPAPIESFTD-MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-V 189 (565)
Q Consensus 112 ~~~~~p~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~-~ 189 (565)
+....|.+..+|.+ +++++.+++.+.+.|+.+|+++|.++++.+++|+++++.+|||+|||++|+++++..+..... .
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 44577899999999 799999999999999999999999999999999999999999999999999999887764321 1
Q ss_pred CCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 190 GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 190 ~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
....++++||++|+++|+.|+.+.++++.. .++.+..++|+.........+..+++|+|+||++|.+.+......+.+
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCccc
Confidence 123578899999999999999999999863 367888889988877777777888999999999999998888888999
Q ss_pred ceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEE
Q 008443 270 VSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVK 329 (565)
Q Consensus 270 ~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (565)
+++|||||||++.+.+|...+..++..++++.|++++|||++..+..++..++.+|..+.
T Consensus 168 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 168 ITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999999887664
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-33 Score=261.96 Aligned_cols=203 Identities=34% Similarity=0.640 Sum_probs=184.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
.+|+++++++.+++.+...|+..|+++|.++++.+++++++++.+|||+|||++|+++++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999988875432 246789999
Q ss_pred cCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhh
Q 008443 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (565)
Q Consensus 201 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~ 280 (565)
+|+++|+.|+.+.++++....++..+..+.|+.........+..+++|+|+||++|.+.+..+...+.++++||+||+|+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 99999999999999999876556788999999888877777778899999999999999988878889999999999999
Q ss_pred hhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEE
Q 008443 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQV 328 (565)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 328 (565)
+.+.++...+..++..++++.|++++|||++..+..++..++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999899999999999998889999999999999999999999888654
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1e-33 Score=267.64 Aligned_cols=210 Identities=29% Similarity=0.508 Sum_probs=183.5
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 008443 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 115 ~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~ 194 (565)
..|.+..+|+++++++.+.+.+...||..|+++|.++++.++.|+++++.+|||+|||++|+++++..+... ..+
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~ 92 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NLS 92 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 346677889999999999999999999999999999999999999999999999999999999998876543 246
Q ss_pred CeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEE
Q 008443 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (565)
Q Consensus 195 ~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iI 274 (565)
+++|||+|+++|+.|+.+.++++.....++.+..+.|+.....+...+ .+++|+|+||++|.+.+..+...+.++++||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 789999999999999999999987665568889999998877665554 4699999999999999888778888999999
Q ss_pred ecchhhhhhCC-CHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEe
Q 008443 275 LDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKV 330 (565)
Q Consensus 275 iDE~H~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
|||||++.+.+ |...+..++..++...|++++|||++..+..++..++.++..+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999887 999999999999988999999999999999999999988877643
No 58
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=8e-34 Score=272.63 Aligned_cols=222 Identities=45% Similarity=0.745 Sum_probs=188.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCC----CCCC
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----GRGD 193 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~----~~~~ 193 (565)
.++.+|+++++++.+++.+...|+..|+++|.++++.++.++++++++|||+|||++|+++++..+...... ....
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 378899999999999999999999999999999999999999999999999999999999999887754211 1224
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
++++|||+|+++|+.|+.+.++++.... ++.+..+.|+.........+..+++|+|+||++|.+.+......+.++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEE
Confidence 5789999999999999999999987654 578888899988877777777889999999999999998888888999999
Q ss_pred EecchhhhhhCCCHHHHHHHHHhC--CC--CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCce
Q 008443 274 ILDEADRMLDMGFEPQIREVMQNL--PD--KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANV 340 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (565)
|+||||++.+.+|...+..++..+ +. +.|++++|||++.++..++..++.++..+.+........++
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 999999999999999999999854 33 67899999999999999999999999888776554433333
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.6e-34 Score=305.92 Aligned_cols=281 Identities=21% Similarity=0.212 Sum_probs=205.7
Q ss_pred HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCC
Q 008443 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~ 233 (565)
..+++++++++||||+|||+.+ +..+.. .+..+|++|+++|+.|+++.+++. ++.+..++|+.
T Consensus 151 r~l~rk~vlv~apTGSGKT~~a----l~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~ 213 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHA----IQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEE 213 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHH----HHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSC
T ss_pred HhcCCCEEEEEcCCCCCHHHHH----HHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCe
Confidence 3457889999999999999843 333333 234699999999999999998875 46788888886
Q ss_pred cHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCC-CCCeEEEEeccccH
Q 008443 234 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATMPV 312 (565)
Q Consensus 234 ~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~ 312 (565)
..... .-....+++++|++.+. ....+++|||||+|++.+.+++..+..++..++ ...+++++|||.+
T Consensus 214 ~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 214 RVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp EECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred eEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 53100 00013678888886653 246789999999999999999999998888887 6788999999953
Q ss_pred HHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHH
Q 008443 313 EIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (565)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~ 392 (565)
.+..+.... .....+...... .... .....-.. +.. .....+|||+++..++.+++
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r~---~~l~---~~~~~l~~-------l~~----------~~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKRL---TPIS---VLDHALES-------LDN----------LRPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCCS---SCEE---ECSSCCCS-------GGG----------CCTTEEEECSSHHHHHHHHH
T ss_pred HHHHHHHhc-CCceEEEEeeec---chHH---HHHHHHHH-------HHh----------cCCCCEEEEcCHHHHHHHHH
Confidence 233333332 333333221111 0000 00000000 000 01136899999999999999
Q ss_pred HHHHCCCceEEecCCCChhhHHHHHHhhhc--CCeeEEEeccccccCCCccCccEEEEcCC--------------CCCcc
Q 008443 393 ALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDL--------------PKTVE 456 (565)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~v~~Vi~~~~--------------~~s~~ 456 (565)
.|.+.++.+..+||++++++|..+++.|++ |+++|||||+++++|||+ ++++||+++. |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 889999999999999999 8999999998 77899
Q ss_pred chhhhhcccccCCCc---eeEEEEeccccHHHHHH
Q 008443 457 DYVHRIGRTGRGGSM---GQATSFYTDRDMLLVAQ 488 (565)
Q Consensus 457 ~~~Q~~GRagR~g~~---g~~~~~~~~~d~~~~~~ 488 (565)
+|+||+|||||.|.. |.|+.++. .+...++.
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~ 451 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKE 451 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHH
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHH
Confidence 999999999999964 66555543 44443333
No 60
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=267.07 Aligned_cols=208 Identities=38% Similarity=0.684 Sum_probs=188.1
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeE
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (565)
.+..+|+++++++.+++.+...|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+.... .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 4467899999999999999999999999999999999999999999999999999999999998877642 36689
Q ss_pred EEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc-CCCCCCCceEEEec
Q 008443 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILD 276 (565)
Q Consensus 198 Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~iIiD 276 (565)
||++|+++|+.|+.+.++++.... ++.+..+.|+.........+..+++|+|+||++|.+.+.. ..+.+.++++||||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 999999999999999999988764 5788889999888777777778899999999999988876 45678899999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEec
Q 008443 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVG 331 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
|||++.+.+|...+..++..++++.|++++|||++..+..++..++.+|..+.+.
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999899999999999999999999999999877653
No 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=308.58 Aligned_cols=371 Identities=16% Similarity=0.221 Sum_probs=246.0
Q ss_pred CCCCCCccccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh---
Q 008443 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--- 156 (565)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~--- 156 (565)
..|.....+....++.++.+..+.+........ ...+.....|..+...|.... -.+|+++|.+++..+.
T Consensus 180 ~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~------~~~Lr~yQ~egv~~l~~~~ 252 (800)
T 3mwy_W 180 ATWENATDIVKLAPEQVKHFQNRENSKILPQYS-SNYTSQRPRFEKLSVQPPFIK------GGELRDFQLTGINWMAFLW 252 (800)
T ss_dssp CBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTC-CCCCSCCCCCCCCSSCCTTCC------SSCCCTHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhcccCCcch-hcccccCCcccccccCCCccC------CCCcCHHHHHHHHHHHHHh
Confidence 456655556666788888888765432211111 111222233444433333221 1379999999998776
Q ss_pred -cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcH
Q 008443 157 -SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (565)
Q Consensus 157 -~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (565)
.++++|++.+||+|||+++ +.++..++... ...+.+||||| ..|+.||.++|.+++. .+.+..+.|+...
T Consensus 253 ~~~~~~ILademGlGKT~~a-i~~i~~l~~~~----~~~~~~LIV~P-~sll~qW~~E~~~~~p---~~~v~~~~g~~~~ 323 (800)
T 3mwy_W 253 SKGDNGILADEMGLGKTVQT-VAFISWLIFAR----RQNGPHIIVVP-LSTMPAWLDTFEKWAP---DLNCICYMGNQKS 323 (800)
T ss_dssp TTTCCEEECCCTTSSTTHHH-HHHHHHHHHHH----SCCSCEEEECC-TTTHHHHHHHHHHHST---TCCEEECCCSSHH
T ss_pred hcCCCEEEEeCCCcchHHHH-HHHHHHHHHhc----CCCCCEEEEEC-chHHHHHHHHHHHHCC---CceEEEEeCCHHH
Confidence 7789999999999999997 44555443321 12456899999 7899999999999874 5677777777665
Q ss_pred HHHHHHH------------hCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeE
Q 008443 236 AEQRSEL------------RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQT 303 (565)
Q Consensus 236 ~~~~~~~------------~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~ 303 (565)
....... ...++|+|+|++.+...... +....+++|||||||++.+.. ......+..++.. ..
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~~~-~r 398 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFKVA-NR 398 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSEEE-EE
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHhhhc-cE
Confidence 5443322 23578999999999765432 223368999999999996543 2344555566543 47
Q ss_pred EEEecccc----HHHHHHHHhhcC-----------------------------CCeEEEecCcC--CCCCceEEEEEEec
Q 008443 304 LLFSATMP----VEIEALAQGYLT-----------------------------DPVQVKVGKVS--SPTANVIQILEKVS 348 (565)
Q Consensus 304 l~~SAT~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~ 348 (565)
+++||||- .++..++.-+.. .+..++..... ...+........+.
T Consensus 399 l~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ 478 (800)
T 3mwy_W 399 MLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVE 478 (800)
T ss_dssp EEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEEC
T ss_pred EEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeC
Confidence 88999992 222222221111 11111111100 00111111111111
Q ss_pred cc---------------------------------------------------------------------------hHH
Q 008443 349 EN---------------------------------------------------------------------------EKV 353 (565)
Q Consensus 349 ~~---------------------------------------------------------------------------~~~ 353 (565)
.. .|.
T Consensus 479 ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~ 558 (800)
T 3mwy_W 479 LSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKM 558 (800)
T ss_dssp CCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHH
Confidence 11 111
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCe---eEEEe
Q 008443 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST---NILVA 430 (565)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vLv~ 430 (565)
..+...+... ...+.++||||.....++.+.+.|...|+.+..+||+++..+|..+++.|+++.. .+|++
T Consensus 559 ~~L~~lL~~~-------~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 559 VLLDQLLTRL-------KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHHHHHHHHH-------TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred HHHHHHHHHH-------hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 1111222111 1234579999999999999999999999999999999999999999999998665 49999
Q ss_pred ccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 431 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 431 T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
|.++++|||++.+++||++|+++++..+.|++||++|.|+...|.++.
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 999999999999999999999999999999999999999877665543
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.5e-33 Score=267.75 Aligned_cols=211 Identities=36% Similarity=0.577 Sum_probs=176.0
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 008443 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 115 ~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~ 194 (565)
..|.+..+|+++++++.+++.+...||..|+++|.++++.++.++++++++|||+|||++|+++++..+... ..+
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~ 98 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKE 98 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 446678899999999999999999999999999999999999999999999999999999999998876432 246
Q ss_pred CeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhC-CCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRG-GVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 195 ~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
+++||++|+++|+.|+.+.++++.... +..+..+.|+.........+.. .++|+|+||++|.+.+......+.++++|
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 789999999999999999999987654 5677778888766555444444 48999999999999998887888899999
Q ss_pred EecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEec
Q 008443 274 ILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVG 331 (565)
Q Consensus 274 IiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
||||||++.+.++...+..++..+++..|++++|||++..+..++..++.+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999899999999999999999999999988877543
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=9.7e-34 Score=265.82 Aligned_cols=208 Identities=31% Similarity=0.545 Sum_probs=183.5
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Li 199 (565)
..+|+++++++.+++.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|+++++..+... ..++++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 3579999999999999999999999999999999999999999999999999999999998876542 24678999
Q ss_pred EcCchhhHHHHHHHHHHHHhcCC---CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEec
Q 008443 200 LAPTRELAQQIEKEVKALSRSLD---SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (565)
Q Consensus 200 l~P~~~L~~Q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiD 276 (565)
++|+++|+.|+.+.++++..... .+.+..+.|+.........+..+++|+|+||++|.+.+..+...+.++++||||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999999886542 467888888877665544455678999999999999998877888899999999
Q ss_pred chhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecC
Q 008443 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGK 332 (565)
Q Consensus 277 E~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 332 (565)
|||++.+.++...+..++..++++.|++++|||++.++..++..++.+|..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999988899999999999999999999999998776543
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-32 Score=294.00 Aligned_cols=327 Identities=16% Similarity=0.174 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHh---------cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 143 RPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 143 ~~~~~Q~~al~~l~---------~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
.|+|+|.+++..+. .++.+|++.+||+|||+++ +.++..++...+...+..+++|||+|+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~-i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQC-ITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHH-HHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHH-HHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 3456899999999999997 556666666543333345679999996 899999999
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHH--HHH-h-----CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCC
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQR--SEL-R-----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~-----~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~ 285 (565)
+.+++.. .+.+..+.++....... ... . ...+|+|+|++.+..... .+....+++||+||+|++.+..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh
Confidence 9999864 34555666664432211 111 1 147899999999975432 2445679999999999987653
Q ss_pred CHHHHHHHHHhCCCCCeEEEEeccccHHH----HH---------------HHHhhc------------------------
Q 008443 286 FEPQIREVMQNLPDKHQTLLFSATMPVEI----EA---------------LAQGYL------------------------ 322 (565)
Q Consensus 286 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~----~~---------------~~~~~~------------------------ 322 (565)
....+. +..+.. ...+++||||-.+. .. +...|.
T Consensus 209 -~~~~~a-l~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 -NQTYLA-LNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp -HHHHHH-HHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred -hHHHHH-HHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 223333 334443 35899999993210 00 000000
Q ss_pred -----CCCeEEEecCc--CCCCCceEEEEEEeccchHHHHHHHH--------------------------HHHH------
Q 008443 323 -----TDPVQVKVGKV--SSPTANVIQILEKVSENEKVDRLLAL--------------------------LVEE------ 363 (565)
Q Consensus 323 -----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------l~~~------ 363 (565)
..+..+..... ....+........+........+... +.+.
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00001111000 00011111111211111100000000 0000
Q ss_pred ----HH------------------------------------hhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEE
Q 008443 364 ----AF------------------------------------LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVA 403 (565)
Q Consensus 364 ----~~------------------------------------~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~ 403 (565)
.. ..........++||||+.+..++.+.+.|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00 00000012458999999999999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhhcCCee---EEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 404 LHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 404 ~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
+||+++..+|..++++|++|+.. +|++|+++++|+|++++++||++|+|+++..+.|++||++|.|+.+.|.++.
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 99999999999999999998764 8999999999999999999999999999999999999999999887665543
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=260.93 Aligned_cols=227 Identities=35% Similarity=0.567 Sum_probs=191.9
Q ss_pred HHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchH
Q 008443 93 PEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKT 172 (565)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT 172 (565)
.++++.++..+.. ..+.+..+|+++++++.+++.+...|+..|+++|.++++.++.++++++++|||+|||
T Consensus 6 ~~~~~~~~~~~~~---------~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT 76 (236)
T 2pl3_A 6 RESISRLMQNYEK---------INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKT 76 (236)
T ss_dssp HHHHHHHHHTTTT---------CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHH
T ss_pred HhHHHHHHhcccc---------CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHH
Confidence 4456666655432 2245678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEEC
Q 008443 173 AAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 252 (565)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T 252 (565)
++|+++++..+..... ....++++||++|+++|+.|+.+.++.+.... ++.+..++|+.........+ .+++|+|+|
T Consensus 77 ~~~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~T 153 (236)
T 2pl3_A 77 LAFLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCT 153 (236)
T ss_dssp HHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEEC
Confidence 9999999988765321 11247789999999999999999999987654 57888888887766555444 579999999
Q ss_pred chHHHHHHHcC-CCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEec
Q 008443 253 PGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVG 331 (565)
Q Consensus 253 ~~~l~~~~~~~-~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
|++|.+.+... ...+.++++|||||||++.+.+|...+..++..+++..|++++|||++..+..+...++.+|..+.+.
T Consensus 154 p~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 154 PGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999888765 46778999999999999999999999999999999899999999999999999999999998887654
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.2e-33 Score=261.96 Aligned_cols=211 Identities=36% Similarity=0.583 Sum_probs=179.6
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 008443 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (565)
Q Consensus 115 ~~p~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~ 194 (565)
..+.++.+|+++++++.+++.+...|+..|+++|.++++.+++++++++.+|||+|||++|+++++..+... ..+
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~ 82 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 82 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCC
Confidence 456778899999999999999999999999999999999999999999999999999999999998876543 246
Q ss_pred CeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEE
Q 008443 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (565)
Q Consensus 195 ~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iI 274 (565)
+++||++|+++|+.|+.+.++++.... ++.+..+.|+.........+. .++|+|+||++|.+.+......+.++++||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 789999999999999999999987654 578888888877655544443 389999999999999988888889999999
Q ss_pred ecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEecC
Q 008443 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVGK 332 (565)
Q Consensus 275 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 332 (565)
|||||++.+.++...+..++..+++..|++++|||++..+..++..++.++..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999998999999999999999999999999988776543
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.2e-31 Score=278.58 Aligned_cols=319 Identities=19% Similarity=0.232 Sum_probs=238.7
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|.-+.-.+..|+ |..+.||+|||+++.+|++-..+. |+.+.+|+|+..||.|-.+++..++..+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 368999999998888887 999999999999999999866654 6779999999999999999999999887
Q ss_pred CCceEEEEECC--------------------------------------------------CcHHHHHHHHhCCCeEEEE
Q 008443 222 DSFKTAIVVGG--------------------------------------------------TNIAEQRSELRGGVSIVVA 251 (565)
Q Consensus 222 ~~~~~~~~~g~--------------------------------------------------~~~~~~~~~~~~~~~Ilv~ 251 (565)
++.++++... ....+..... .|||+.+
T Consensus 144 -glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYg 220 (822)
T 3jux_A 144 -GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYG 220 (822)
T ss_dssp -TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEE
T ss_pred -CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEc
Confidence 7899888872 2222222233 3899999
Q ss_pred CchHH-HHHHHcC------CCCCCCceEEEecchhhhh-hC------------CCHHHH---HHHHHhC-----------
Q 008443 252 TPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM------------GFEPQI---REVMQNL----------- 297 (565)
Q Consensus 252 T~~~l-~~~~~~~------~~~~~~~~~iIiDE~H~~~-~~------------~~~~~~---~~i~~~~----------- 297 (565)
|..-| ++++..+ ..-...+.|.||||+|.++ +. .-...+ ..+...+
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99988 6666543 2234568999999999643 10 001111 1111111
Q ss_pred ---------------------------------------------CC---------------------------------
Q 008443 298 ---------------------------------------------PD--------------------------------- 299 (565)
Q Consensus 298 ---------------------------------------------~~--------------------------------- 299 (565)
..
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 00
Q ss_pred ----------------------------CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEE-EEEEeccc
Q 008443 300 ----------------------------KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQ-ILEKVSEN 350 (565)
Q Consensus 300 ----------------------------~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 350 (565)
-.++.|||+|...+...+.+.|..+ .+.+. ...+...... ........
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IP-tnkp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIP-THKPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECC-CSSCCCCEECCCEEESSHH
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEEC-CCCCcceeecCcEEEecHH
Confidence 0168999999988777777666433 33332 2222222222 23455677
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEe
Q 008443 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (565)
Q Consensus 351 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 430 (565)
+|...++..+......+. |+||||++++.++.+++.|.+.|+++..+||+..+.++..+...++.| .|+||
T Consensus 458 eK~~al~~~I~~~~~~gq-------pVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQ-------PVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp HHHHHHHHHHHHHHHHTC-------CEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred HHHHHHHHHHHHHhhCCC-------CEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 788888888876543322 599999999999999999999999999999996666666666666666 59999
Q ss_pred ccccccCCCcc--------CccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHH
Q 008443 431 TDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 485 (565)
Q Consensus 431 T~~~~~Gidip--------~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~ 485 (565)
|+++++|+||+ +..+||+++.|.+...|+||+||+||.|.+|.++.|++..|...
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 99999999998 56799999999999999999999999999999999999887543
No 68
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=273.63 Aligned_cols=206 Identities=31% Similarity=0.496 Sum_probs=182.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~ 195 (565)
....+|.++++++.+++.|..+||..|+++|.++++.++.+ ++++++++||||||++|+++++..+... ..++
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~ 163 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSC
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCc
Confidence 45789999999999999999999999999999999999987 8999999999999999999999887543 2467
Q ss_pred eEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc-CCCCCCCceEEE
Q 008443 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVI 274 (565)
Q Consensus 196 ~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~iI 274 (565)
++|||+|+++|+.|+.+.++.+......+.+....|+...... ...+++|+|+||++|.+++.. ..+.+.++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 8999999999999999999999876666788888887654322 245689999999999999865 456788999999
Q ss_pred ecchhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEec
Q 008443 275 LDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKVG 331 (565)
Q Consensus 275 iDE~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (565)
|||||++.+ .+|...+..++..+++++|++++|||++..+..++..++.+|..+.+.
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999998 689999999999999999999999999999999999999999888764
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-32 Score=256.38 Aligned_cols=204 Identities=47% Similarity=0.731 Sum_probs=183.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+|+++++++.+++.+...|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 588999999999999999999999999999999999999999999999999999999888765421 123477899999
Q ss_pred CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh
Q 008443 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (565)
Q Consensus 202 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~ 281 (565)
|+++|+.|+.+.+++++.. +.+..+.|+.....+...+..+++|+|+||+++.+.+......+.++++||+||||++
T Consensus 80 P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh
Confidence 9999999999999998753 6778888988877776677778999999999999999888888899999999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEEe
Q 008443 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVKV 330 (565)
Q Consensus 282 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (565)
.+.++...+..++..++++.|++++|||++..+..+...++.+|..+.+
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999999989999999999999999999999998887654
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=257.67 Aligned_cols=206 Identities=32% Similarity=0.548 Sum_probs=180.1
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008443 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~L 198 (565)
...+|+++++++.+++.+...|+..|+++|.++++.+++++++++++|||+|||++|+++++..+... ..++++|
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 86 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVL 86 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999888775432 2356899
Q ss_pred EEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcCCCCCCCceEEEecc
Q 008443 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE 277 (565)
|++|+++|+.|+.+.++++....+++.+..+.|+.....+...+. ..++|+|+||+++.+.+......+.++++|||||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 999999999999999999987655688899999988776665554 4579999999999999888878889999999999
Q ss_pred hhhhhh-CCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCCeEEE
Q 008443 278 ADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDPVQVK 329 (565)
Q Consensus 278 ~H~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (565)
||++.+ .++...+..++..++++.|++++|||++..+..+++.++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999986 4677888899999988899999999999999999999999887664
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=262.30 Aligned_cols=203 Identities=38% Similarity=0.619 Sum_probs=177.0
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q 008443 121 ESFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (565)
Q Consensus 121 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~L 198 (565)
.+|.+++ +++.+++.+...||..|+++|.++++.++.++++++++|||+|||++|+++++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4466665 99999999999999999999999999999999999999999999999999999887763211 12477899
Q ss_pred EEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcC-CCCCCCceEEEecc
Q 008443 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDE 277 (565)
Q Consensus 199 il~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~iIiDE 277 (565)
||+|+++|+.|+.+.+++++... ...+..++|+.........+..+++|+|+||++|.+.+... ...+.++++|||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 99999999999999999998764 57888899998888777777777999999999999888765 36788999999999
Q ss_pred hhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhhcCCC
Q 008443 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGYLTDP 325 (565)
Q Consensus 278 ~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 325 (565)
||++.+.+|...+..++..++...|++++|||++..+..+++.++.++
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred hHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999998887654
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=9.8e-33 Score=307.59 Aligned_cols=320 Identities=13% Similarity=0.094 Sum_probs=214.8
Q ss_pred CCCCHHHHHHHHHHhc--------------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 142 TRPTSIQAQAMPVALS--------------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~--------------~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
..|+++|.+|++.++. +++++++++||||||+++ ++++..+... +...++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 4599999999999875 367999999999999997 6666543321 1346899999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh-CCCeEEEECchHHHHHHHcCC--CCCCCceEEEecchhhhhhC
Q 008443 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (565)
Q Consensus 208 ~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~iIiDE~H~~~~~ 284 (565)
.|+.+.|..+.... +.++.........+. .+.+|+|+|+++|...+.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 99999998875421 224444445444553 568999999999988776432 2356789999999999763
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEeccccHHHH----HHHHhhcCC-----------------CeEEEecCcCCCC-----C
Q 008443 285 GFEPQIREVMQNLPDKHQTLLFSATMPVEIE----ALAQGYLTD-----------------PVQVKVGKVSSPT-----A 338 (565)
Q Consensus 285 ~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~-----~ 338 (565)
...+..+...++ +.++++|||||..... .....+++. +..+......... .
T Consensus 416 --~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 --GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp --HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC
T ss_pred --hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc
Confidence 344677888886 4689999999974211 011111222 2221111000000 0
Q ss_pred -c------eEEEEEEeccchHHHHHHHHHHHHHHhhhcc---CCCCCeEEEEEcchhhHHHHHHHHHHCC----------
Q 008443 339 -N------VIQILEKVSENEKVDRLLALLVEEAFLAEKS---CHPFPLTIVFVERKTRCDEVSEALVAEG---------- 398 (565)
Q Consensus 339 -~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~lvF~~~~~~a~~l~~~l~~~~---------- 398 (565)
. +.. ...+....+...+...+.......... ...+.++||||+++.+|..+++.|.+.+
T Consensus 493 ~d~~~~~~i~~-~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 493 TDEKKLSAAEN-QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCHHHHHHTCS-TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred ccHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 000 000011222333344333322111110 0123479999999999999999998754
Q ss_pred --Cce-EEecCC----------C----------Ch-----------------------------hhHHHHHHhhhcCCee
Q 008443 399 --LHA-VALHGG----------R----------NQ-----------------------------SDRESALRDFRNGSTN 426 (565)
Q Consensus 399 --~~~-~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~ 426 (565)
+.+ +.+|++ + ++ .+|..++++|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 455 445542 1 21 1478899999999999
Q ss_pred EEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCc----eeEEEEecc
Q 008443 427 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM----GQATSFYTD 480 (565)
Q Consensus 427 vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~----g~~~~~~~~ 480 (565)
|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|...
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999999999999999 678899999999999999999998754 777776653
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=260.80 Aligned_cols=229 Identities=31% Similarity=0.538 Sum_probs=188.8
Q ss_pred HHHHHHHHcCceEEecCCCCCCCCCCCCcccC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCc
Q 008443 95 QIEEVRLRLNVDVTVASGSVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSG 170 (565)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsG 170 (565)
+++.++...++.+. +...|.++.+|+++ ++++.+++.+...|+..|+++|.++++.+++|+++++.+|||+|
T Consensus 3 ~~~~~~~~~~i~~~----~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsG 78 (245)
T 3dkp_A 3 KINFLRNKHKIHVQ----GTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSG 78 (245)
T ss_dssp HHHHHHHHTTEEEE----SSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSC
T ss_pred hHHHHHHhCceEec----CCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCc
Confidence 45667777776664 24568889999987 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHH-HHHhCCCeEE
Q 008443 171 KTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-SELRGGVSIV 249 (565)
Q Consensus 171 KT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Il 249 (565)
||++|+++++..+... ...++++|||+|+++|+.|+.+.+++++... ++.+..+.|+....... .....+++|+
T Consensus 79 KT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 79 KTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDIL 153 (245)
T ss_dssp HHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEE
T ss_pred HHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEE
Confidence 9999999998877542 1246789999999999999999999998764 46666665553322211 1223568999
Q ss_pred EECchHHHHHHHcC--CCCCCCceEEEecchhhhhh---CCCHHHHHHHHHhC-CCCCeEEEEeccccHHHHHHHHhhcC
Q 008443 250 VATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQGYLT 323 (565)
Q Consensus 250 v~T~~~l~~~~~~~--~~~~~~~~~iIiDE~H~~~~---~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~ 323 (565)
|+||++|.+.+... ...+.++++|||||||++.+ .++...+..++..+ .++.|+++||||++.++..+...++.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 99999999998776 46788999999999999987 46888888887776 45789999999999999999999999
Q ss_pred CCeEEEecC
Q 008443 324 DPVQVKVGK 332 (565)
Q Consensus 324 ~~~~~~~~~ 332 (565)
++..+.++.
T Consensus 234 ~p~~i~~~~ 242 (245)
T 3dkp_A 234 NVISVSIGA 242 (245)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEeCC
Confidence 999887764
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=8.8e-27 Score=246.65 Aligned_cols=320 Identities=19% Similarity=0.226 Sum_probs=236.4
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 138 ~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|+ .|+++|..+++.+++|+ +..+.||+|||++|++|++...+. |..++||+||++||.|.++.+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4788 99999999999999998 999999999999999999755543 567999999999999999999999
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHH-HHHHHcCC------CCCC---CceEEEecchhhhh-hCCC
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLS---RVSFVILDEADRML-DMGF 286 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~~~---~~~~iIiDE~H~~~-~~~~ 286 (565)
+..+ ++.+++++||......... ..++|+||||+.| ++++..+. ..++ .+.++||||+|.++ +.+.
T Consensus 144 ~~~l-GLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDear 220 (997)
T 2ipc_A 144 YRGL-GLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEAR 220 (997)
T ss_dssp HHTT-TCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTT
T ss_pred HHhc-CCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCC
Confidence 9876 7999999999886544333 4599999999999 88887653 4567 89999999999876 2210
Q ss_pred ---------------HHHHHHHHHhCCCC---------------------------------------------------
Q 008443 287 ---------------EPQIREVMQNLPDK--------------------------------------------------- 300 (565)
Q Consensus 287 ---------------~~~~~~i~~~~~~~--------------------------------------------------- 300 (565)
...+..++..++..
T Consensus 221 tPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l 300 (997)
T 2ipc_A 221 TPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMEL 300 (997)
T ss_dssp SCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHH
T ss_pred CCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHH
Confidence 11122222222110
Q ss_pred ------------------------------------------------------------------------------Ce
Q 008443 301 ------------------------------------------------------------------------------HQ 302 (565)
Q Consensus 301 ------------------------------------------------------------------------------~~ 302 (565)
.+
T Consensus 301 ~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~k 380 (997)
T 2ipc_A 301 AHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEK 380 (997)
T ss_dssp HHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChH
Confidence 05
Q ss_pred EEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCc-eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEE
Q 008443 303 TLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (565)
Q Consensus 303 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~ 381 (565)
+.|||+|...+-..+.+.|-.+. +.+.. ..+... -.....+.+..+|...+++.+.+....+. |+||+|
T Consensus 381 LsGMTGTA~tE~~Ef~~iY~l~V--v~IPT-n~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~Gq-------PVLVgT 450 (997)
T 2ipc_A 381 RAGMTGTAKTEEKEFQEIYGMDV--VVVPT-NRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQ-------PVLVGT 450 (997)
T ss_dssp EEEEESSCGGGHHHHHHHHCCCE--EECCC-SSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTC-------CEEEEC
T ss_pred heecCCCchHHHHHHHHHhCCCE--EEcCC-CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCC-------CEEEEe
Confidence 67888888776666666664442 22221 222211 12233455667888888888877654432 599999
Q ss_pred cchhhHHHHHHHHH------------------------------------------------------------------
Q 008443 382 ERKTRCDEVSEALV------------------------------------------------------------------ 395 (565)
Q Consensus 382 ~~~~~a~~l~~~l~------------------------------------------------------------------ 395 (565)
.|++..+.+++.|.
T Consensus 451 ~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 530 (997)
T 2ipc_A 451 ISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGL 530 (997)
T ss_dssp SSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccccccccccccccccc
Confidence 99999999999998
Q ss_pred ----------HCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCc-------------------c--
Q 008443 396 ----------AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV-------------------A-- 444 (565)
Q Consensus 396 ----------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v-------------------~-- 444 (565)
+.|++.-++.+.....+-+-+-+.-+.| .|-|||+|+++|.||.=- .
T Consensus 531 ~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~ 608 (997)
T 2ipc_A 531 KRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWK 608 (997)
T ss_dssp HHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHH
T ss_pred chhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccc
Confidence 5677777777664433322232332333 499999999999998421 1
Q ss_pred -----------------------------------------------------EEEEcCCCCCccchhhhhcccccCCCc
Q 008443 445 -----------------------------------------------------HVVNLDLPKTVEDYVHRIGRTGRGGSM 471 (565)
Q Consensus 445 -----------------------------------------------------~Vi~~~~~~s~~~~~Q~~GRagR~g~~ 471 (565)
+||-...+.|...-.|..||+||.|.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDP 688 (997)
T 2ipc_A 609 VELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDP 688 (997)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCC
T ss_pred cccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCC
Confidence 788888899999999999999999999
Q ss_pred eeEEEEeccccH
Q 008443 472 GQATSFYTDRDM 483 (565)
Q Consensus 472 g~~~~~~~~~d~ 483 (565)
|....|++-+|.
T Consensus 689 GsSrF~LSLeDd 700 (997)
T 2ipc_A 689 GGSRFYVSFDDD 700 (997)
T ss_dssp CEEEEEEESSSH
T ss_pred CCeEEEEECChH
Confidence 999988887764
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.1e-27 Score=256.53 Aligned_cols=133 Identities=25% Similarity=0.336 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEE
Q 008443 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (565)
Q Consensus 350 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 429 (565)
..+...++..+......+ .++||||+++..|+.+++.|.+.|+.+..+||++++.+|..+++.|+.|+++|||
T Consensus 422 ~~~~~~Ll~~l~~~~~~~-------~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLv 494 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARG-------ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLV 494 (664)
T ss_dssp TTHHHHHHHHHHHHHHTT-------CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEE
T ss_pred cchHHHHHHHHHHHHhcC-------CEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEE
Confidence 345556666655543222 3699999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCccCccEEEEcCC-----CCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 008443 430 ATDVASRGLDVMGVAHVVNLDL-----PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 430 ~T~~~~~Gidip~v~~Vi~~~~-----~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~ 490 (565)
||+++++|+|+|++++||++|. |.+...|+||+||+||.+ .|.++++++..+....+.+.
T Consensus 495 aT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 495 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp ESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 9999999999999999999997 889999999999999995 79999999988776655554
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.9e-26 Score=247.43 Aligned_cols=175 Identities=19% Similarity=0.237 Sum_probs=132.9
Q ss_pred CCeEEEEeccccHHHHHHHHhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 008443 300 KHQTLLFSATMPVEIEALAQGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (565)
Q Consensus 300 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lv 379 (565)
..|++++|||++...... ................+ . +.......+...++..+...... +.++||
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~~~-------~~~vlV 450 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-L---IDVRPIEGQIDDLIGEIQARIER-------NERVLV 450 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHHTT-------TCEEEE
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-e---EEEecccchHHHHHHHHHHHHhc-------CCeEEE
Confidence 568999999997543221 01111111111111111 1 11222334555565555543322 236999
Q ss_pred EEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCC-----CCC
Q 008443 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PKT 454 (565)
Q Consensus 380 F~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~-----~~s 454 (565)
||+++..|+.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+
T Consensus 451 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s 530 (661)
T 2d7d_A 451 TTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 530 (661)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTS
T ss_pred EECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred ccchhhhhcccccCCCceeEEEEeccccHHHHHHHH
Q 008443 455 VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 490 (565)
Q Consensus 455 ~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~ 490 (565)
...|+||+||+||. ..|.++++++..+......+.
T Consensus 531 ~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 531 ERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999998 679999999988776655554
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=2e-25 Score=198.47 Aligned_cols=150 Identities=37% Similarity=0.560 Sum_probs=137.1
Q ss_pred CCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHH
Q 008443 336 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 415 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 415 (565)
...++.+.+..+....|...+...+... ...++||||+++..++.+++.|...++.+..+||++++.+|..
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---------NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---------CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 3456788888888888988888777652 1236999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 416 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
+++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++...+...+..+++.+.
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887653
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=5.1e-26 Score=207.09 Aligned_cols=168 Identities=39% Similarity=0.654 Sum_probs=132.4
Q ss_pred HhhcCCCeEEEecCcCCCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCC
Q 008443 319 QGYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (565)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~ 398 (565)
..|+.+|..+.+........++.+.+..+....|...+.+.+... .+++||||+++..++.+++.|...+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~----------~~~~lVF~~~~~~~~~l~~~L~~~g 78 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT----------PPPVLIFAEKKADVDAIHEYLLLKG 78 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS----------CSCEEEECSCHHHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEECCHHHHHHHHHHHHHcC
Confidence 346777777777766666778889998888888888877766431 2369999999999999999999999
Q ss_pred CceEEecCCCChhhHHHHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEe
Q 008443 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 478 (565)
Q Consensus 399 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~ 478 (565)
+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cHHHHHHHHHHHhhh
Q 008443 479 TDR-DMLLVAQIKKAIVDA 496 (565)
Q Consensus 479 ~~~-d~~~~~~l~~~~~~~ 496 (565)
... +...+..+++.+...
T Consensus 159 ~~~~~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 159 NKACDESVLMDLKALLLEA 177 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHT
T ss_pred cCchhHHHHHHHHHHHHHc
Confidence 876 777788887776543
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=8.6e-25 Score=194.83 Aligned_cols=147 Identities=32% Similarity=0.553 Sum_probs=127.0
Q ss_pred ceEEEEEEeccch-HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHH
Q 008443 339 NVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (565)
Q Consensus 339 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 417 (565)
++.+.+..+.... |...+...+... +.+++||||+++..++.+++.|...++.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---------TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 4566777777666 877777766542 234699999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
+.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+.+...+..+++.+.
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888877654
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=200.03 Aligned_cols=154 Identities=46% Similarity=0.733 Sum_probs=125.8
Q ss_pred CCCCceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHH
Q 008443 335 SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 414 (565)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 414 (565)
....++.+.+..+....|...+.+.+.... +..++||||+++..++.+++.|...|+.+..+||++++.+|.
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~--------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATG--------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 86 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC---------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------C
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcC--------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHH
Confidence 345678888888888889888888776521 334699999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHh
Q 008443 415 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 494 (565)
Q Consensus 415 ~~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~ 494 (565)
.+++.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++...+...++.+.+.+.
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888775
Q ss_pred hh
Q 008443 495 DA 496 (565)
Q Consensus 495 ~~ 496 (565)
..
T Consensus 167 ~~ 168 (185)
T 2jgn_A 167 EA 168 (185)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=7.5e-25 Score=196.28 Aligned_cols=148 Identities=32% Similarity=0.546 Sum_probs=132.0
Q ss_pred CceEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHH
Q 008443 338 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (565)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 417 (565)
..+.+.+..+....|...+...+... ...++||||+++..++.+++.|...++.+..+||++++.+|..++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---------CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 45677888888888888887777542 234699999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccc-cHHHHHHHHHHHh
Q 008443 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 494 (565)
Q Consensus 418 ~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-d~~~~~~l~~~~~ 494 (565)
+.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+. +...++.+++.+.
T Consensus 75 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 75 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999875 5566777766543
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=196.00 Aligned_cols=149 Identities=28% Similarity=0.460 Sum_probs=129.1
Q ss_pred CCceEEEEEEeccch-HHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHH
Q 008443 337 TANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 415 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 415 (565)
..++.+.+..+.... |...+...+.. .+.+++||||+++..++.+++.|...++.+..+||++++.+|..
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGS---------ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT---------SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 456778888877655 77666665532 13347999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCeeEEEeccccccCCCccCccEEEEcCCC------CCccchhhhhcccccCCCceeEEEEeccccHHHHHHH
Q 008443 416 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 489 (565)
Q Consensus 416 ~~~~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~------~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l 489 (565)
+++.|++|+++|||||+++++|+|+|++++||++|+| .+...|+||+||+||.|+.|.+++++...+...+..+
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 9999999999999999999999999999999999999 8999999999999999999999999999998888888
Q ss_pred HHHHh
Q 008443 490 KKAIV 494 (565)
Q Consensus 490 ~~~~~ 494 (565)
++.+.
T Consensus 156 ~~~~~ 160 (175)
T 2rb4_A 156 QDHFN 160 (175)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=5.9e-24 Score=197.24 Aligned_cols=144 Identities=36% Similarity=0.529 Sum_probs=128.4
Q ss_pred EEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhc
Q 008443 343 ILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN 422 (565)
Q Consensus 343 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 422 (565)
.........|...+...+... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++
T Consensus 9 ~~~~~~~~~k~~~l~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 79 (212)
T 3eaq_A 9 EAVPAPVRGRLEVLSDLLYVA---------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ 79 (212)
T ss_dssp EEEECCTTSHHHHHHHHHHHH---------CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS
T ss_pred eEEeCCHHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 344556677888777777532 12369999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 423 GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 423 g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
|+++|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++++..+...+..+++.+..
T Consensus 80 g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 80 GEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp SSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred CCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=3.3e-23 Score=201.10 Aligned_cols=147 Identities=34% Similarity=0.511 Sum_probs=128.7
Q ss_pred eEEEEEEeccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHh
Q 008443 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (565)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 419 (565)
+.+.+..+....|...+...+.... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~---------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~ 73 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS---------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGA 73 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC---------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC---------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 4566777778888888877775432 2369999999999999999999999999999999999999999999
Q ss_pred hhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHHhh
Q 008443 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 495 (565)
Q Consensus 420 f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~~~ 495 (565)
|++|+++|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.|+++++..+...+..+++.+..
T Consensus 74 f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 74 FRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp HHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred hhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888777643
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=6.4e-24 Score=198.43 Aligned_cols=167 Identities=21% Similarity=0.244 Sum_probs=118.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH-HHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-IEKEVKAL 217 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q-~~~~~~~~ 217 (565)
.....|+++|.++++.++.++++++.+|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999998888776554211 1136689999999999999 77888888
Q ss_pred HhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCC------CCCCCceEEEecchhhhhhCCCHHHH-
Q 008443 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN------TSLSRVSFVILDEADRMLDMGFEPQI- 290 (565)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~------~~~~~~~~iIiDE~H~~~~~~~~~~~- 290 (565)
... .+.+..+.|+.............++|+|+||+.|...+.... ..+.++++|||||||++.+.++...+
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 754 567777777765443333333468999999999998887643 56788999999999999876554433
Q ss_pred HHHHHhC-------------CCCCeEEEEecc
Q 008443 291 REVMQNL-------------PDKHQTLLFSAT 309 (565)
Q Consensus 291 ~~i~~~~-------------~~~~~~l~~SAT 309 (565)
..++... .+..++|++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2222211 156789999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=7.7e-25 Score=196.06 Aligned_cols=145 Identities=36% Similarity=0.603 Sum_probs=126.2
Q ss_pred eEEEEEEecc-chHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHH
Q 008443 340 VIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALR 418 (565)
Q Consensus 340 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 418 (565)
+.+.+..+.. ..|...+...+... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~---------~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP---------EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 3444444554 55666665555432 1236999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeEEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEEeccccHHHHHHHHHHH
Q 008443 419 DFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 493 (565)
Q Consensus 419 ~f~~g~~~vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~~~~~d~~~~~~l~~~~ 493 (565)
.|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++...+...+..+++.+
T Consensus 75 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999888887776654
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=7.4e-22 Score=209.04 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=65.7
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEE--eccccccCCCccC----ccEEEE
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV--ATDVASRGLDVMG----VAHVVN 448 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv--~T~~~~~Gidip~----v~~Vi~ 448 (565)
+.+|||++|...++.+++.+.. .. +..++.. ..|.++++.|++|. .||+ +|+.+.+|||+|+ +++||+
T Consensus 385 g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii 458 (540)
T 2vl7_A 385 KSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVL 458 (540)
T ss_dssp SEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEE
Confidence 4699999999999999988865 23 3445443 57889999999865 5777 7899999999997 899999
Q ss_pred cCCCCCcc------------------------------chhhhhcccccCCCceeEEEEeccc
Q 008443 449 LDLPKTVE------------------------------DYVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 449 ~~~~~s~~------------------------------~~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
++.|.... .+.|.+||+-|...+--++++++.+
T Consensus 459 ~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 459 AGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp ESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred ECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 99885322 2368999999986655556666543
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=3.9e-22 Score=194.12 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
.+|+++|.++++.++.+++.+++++||+|||++++..+...+.. .+.++|||+|+++|+.|+.++++++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~- 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSC-
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhccc-
Confidence 38999999999999888889999999999999997666554433 2447999999999999999999988643
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
....+..+.++..... ......+|+|+||+.+... ....+.++++|||||||++. ...+..++..+....
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 2456677777654321 1225689999999987543 22346789999999999987 457788888887788
Q ss_pred eEEEEeccccHHH
Q 008443 302 QTLLFSATMPVEI 314 (565)
Q Consensus 302 ~~l~~SAT~~~~~ 314 (565)
+++++||||++..
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999997653
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=182.80 Aligned_cols=173 Identities=19% Similarity=0.213 Sum_probs=128.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHH
Q 008443 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q 209 (565)
+.+.+.+.......++++|.++++.+..|+++++.|+||+|||.++.++++........ ..+.++++++|+++++.|
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHH
Confidence 44444444445556899999999999999999999999999999888888776665321 124589999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhh-hhCCCH-
Q 008443 210 IEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFE- 287 (565)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~-~~~~~~- 287 (565)
+.+.+...+....+..++.-...... ....+++|+|+||++|.+.+.. .++++++|||||+|++ .+.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 99998877654333444433222110 1124588999999999998875 4789999999999985 555555
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccHHH
Q 008443 288 PQIREVMQNLPDKHQTLLFSATMPVEI 314 (565)
Q Consensus 288 ~~~~~i~~~~~~~~~~l~~SAT~~~~~ 314 (565)
..++.++... ++.|++++|||++.+.
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 4566666665 4789999999998775
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=2.3e-19 Score=190.65 Aligned_cols=313 Identities=14% Similarity=0.120 Sum_probs=195.7
Q ss_pred CCCHHHHHHHHHH----hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~l----~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+++|+|.+++..+ ..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 6899999987754 478999999999999999999998873 6789999999999999999888875
Q ss_pred hcCCCceEEEEECCCcH---------------------------------HHHH------------------HHHhCCCe
Q 008443 219 RSLDSFKTAIVVGGTNI---------------------------------AEQR------------------SELRGGVS 247 (565)
Q Consensus 219 ~~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~ 247 (565)
... ++.+..+.|..+. .... +.....++
T Consensus 72 ~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 72 EKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 443 4666666653211 1111 22234689
Q ss_pred EEEECchHHHHHHHcCCCCC-CCceEEEecchhhhhhCC-----------------------------------------
Q 008443 248 IVVATPGRFLDHLQQGNTSL-SRVSFVILDEADRMLDMG----------------------------------------- 285 (565)
Q Consensus 248 Ilv~T~~~l~~~~~~~~~~~-~~~~~iIiDE~H~~~~~~----------------------------------------- 285 (565)
|||+|+..|++...+..+.+ ....+|||||||++.+ .
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998765543332 4678999999998765 1
Q ss_pred --------------CHHHHHHH----------------------------H----------------------------H
Q 008443 286 --------------FEPQIREV----------------------------M----------------------------Q 295 (565)
Q Consensus 286 --------------~~~~~~~i----------------------------~----------------------------~ 295 (565)
+...+..+ + .
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 00000000 0 0
Q ss_pred hCCCC-CeEEEEeccccHHHHHHHHhhcCC-CeEEE--ecCcCCCCCceEEEEEE--ecc------chHHHHHHHHHHHH
Q 008443 296 NLPDK-HQTLLFSATMPVEIEALAQGYLTD-PVQVK--VGKVSSPTANVIQILEK--VSE------NEKVDRLLALLVEE 363 (565)
Q Consensus 296 ~~~~~-~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~--~~~------~~~~~~l~~~l~~~ 363 (565)
.+... ..+|++|||+.. ...+...+..+ +.... ......+...-..++.. ++. ......+.+.+.+.
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l 388 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKI 388 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHH
Confidence 01122 568999999975 34344433332 22110 00111111111112211 111 11133444444443
Q ss_pred HHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEec--cccccCCCcc
Q 008443 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT--DVASRGLDVM 441 (565)
Q Consensus 364 ~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gidip 441 (565)
... ..+.+|||++|....+.+.+. .+..+..-..+++ +.++++.|+...-.||+|| ..+.+|||+|
T Consensus 389 ~~~------~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 389 YFQ------AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp HHH------CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCE
T ss_pred HHh------CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccc
Confidence 321 123599999999999998872 3444433333333 4567888854444799998 6999999999
Q ss_pred -----CccEEEEcCCCCCcc------------------c------------hhhhhcccccCCCceeEEEEeccc
Q 008443 442 -----GVAHVVNLDLPKTVE------------------D------------YVHRIGRTGRGGSMGQATSFYTDR 481 (565)
Q Consensus 442 -----~v~~Vi~~~~~~s~~------------------~------------~~Q~~GRagR~g~~g~~~~~~~~~ 481 (565)
.+..||+.+.|.... . +.|.+||+-|...+.-++++++.+
T Consensus 457 d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 457 NNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp ETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred ccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 478899888764111 1 158889999987766666666654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=1.1e-19 Score=171.44 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|+++|.++++.++.++++++++|||+|||++++..+... +.++||++|+++|+.|+.+.+.+ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~-~--- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGI-F--- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGG-G---
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHh-C---
Confidence 47999999999999998889999999999999986554331 45699999999999999999988 3
Q ss_pred CCce-EEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCC
Q 008443 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
++. +..+.|+.. ...+|+|+|++.+...... ....+++|||||+|++.+..+ ..++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~ 218 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-A 218 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-C
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-C
Confidence 355 777777653 3578999999998766542 124689999999999976544 55666665 4
Q ss_pred CeEEEEeccccHHH
Q 008443 301 HQTLLFSATMPVEI 314 (565)
Q Consensus 301 ~~~l~~SAT~~~~~ 314 (565)
.++|++||||.+..
T Consensus 219 ~~~l~LSATp~r~D 232 (237)
T 2fz4_A 219 PFRLGLTATFERED 232 (237)
T ss_dssp SEEEEEEESCC---
T ss_pred CEEEEEecCCCCCC
Confidence 67899999998653
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.78 E-value=1.8e-17 Score=177.45 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHH----HhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHH
Q 008443 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (565)
Q Consensus 143 ~~~~~Q~~al~~----l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~ 218 (565)
+|++.|.+++.. +.+|+++++.||||+|||++|++|++..+... +++++|++||++|+.|+.+.++.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 689999998864 45789999999999999999999999987653 6789999999999999999999887
Q ss_pred hcCCCceEEEEEC
Q 008443 219 RSLDSFKTAIVVG 231 (565)
Q Consensus 219 ~~~~~~~~~~~~g 231 (565)
... .+++..+.|
T Consensus 76 ~~~-~~~~~~l~g 87 (620)
T 4a15_A 76 STM-KIRAIPMQG 87 (620)
T ss_dssp HHS-CCCEEECCC
T ss_pred hcc-CeEEEEEEC
Confidence 543 455555554
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=4.8e-18 Score=162.86 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=95.7
Q ss_pred ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-CCceEEecCCCChhhHHHHHHhhhcC-Ce
Q 008443 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-ST 425 (565)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~ 425 (565)
....|...+.+.+.+....+ .++||||++...++.+.+.|... |+.+..+||+++..+|..+++.|++| ++
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~-------~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEG-------DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-------CCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHHhCC-------CeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 45678888888777654322 36999999999999999999985 99999999999999999999999998 77
Q ss_pred e-EEEeccccccCCCccCccEEEEcCCCCCccchhhhhcccccCCCceeEEEE
Q 008443 426 N-ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 477 (565)
Q Consensus 426 ~-vLv~T~~~~~Gidip~v~~Vi~~~~~~s~~~~~Q~~GRagR~g~~g~~~~~ 477 (565)
+ +|++|+++++|+|++.+++||++|+||++..|.|++||++|.|+.+.|.++
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 7 789999999999999999999999999999999999999999998776443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.79 E-value=1.3e-08 Score=108.71 Aligned_cols=146 Identities=19% Similarity=0.247 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHH--HHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAA--FTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~--~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.+.|+.|++.++.++.+++.|++|||||.+ ++++.+..+.. ..+.++++++||..++.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999954 33433332211 1356899999999999999888776654321
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCe
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~ 302 (565)
+..... .+... ....-..++-.+|+.. . +.........+++|||||++.+. ...+..++..++...|
T Consensus 225 -l~~~~~-~~~~~-----~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 225 -LTDEQK-KRIPE-----DASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHAR 291 (608)
T ss_dssp -CCSCCC-CSCSC-----CCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCE
T ss_pred -CCHHHH-hccch-----hhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCE
Confidence 110000 00000 0000011111222211 0 11111222378999999999553 5667888999988899
Q ss_pred EEEEecc
Q 008443 303 TLLFSAT 309 (565)
Q Consensus 303 ~l~~SAT 309 (565)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 9987654
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.47 E-value=8.9e-07 Score=93.59 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..+++.|++|+..+..++.+++.|+.|||||.+. ..++..+.. .+.++++++||...+..+.+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhc------
Confidence 4689999999999998888999999999999874 444444443 36789999999888876654321
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCC
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~ 301 (565)
.....+ . .+.+ . .++. ..........+++|||||++.+. ...+..++..++...
T Consensus 254 --~~a~Ti------h----~ll~---~---~~~~----~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 254 --RTASTV------H----RLLG---Y---GPQG----FRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGA 307 (574)
T ss_dssp --SCEEEH------H----HHTT---E---ETTE----ESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTC
T ss_pred --ccHHHH------H----HHHc---C---Ccch----hhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCC
Confidence 000000 0 0000 0 0000 00111233468999999999764 556778888888777
Q ss_pred eEEEEecc
Q 008443 302 QTLLFSAT 309 (565)
Q Consensus 302 ~~l~~SAT 309 (565)
+++++.-.
T Consensus 308 ~lilvGD~ 315 (574)
T 3e1s_A 308 RVLLVGDT 315 (574)
T ss_dssp EEEEEECT
T ss_pred EEEEEecc
Confidence 77776543
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.46 E-value=4.7e-07 Score=97.82 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHhcCCC-EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~-~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
..|++-|.+|+..++..++ .||.||.|||||.+. ..++..+... +.++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3689999999999887665 799999999999886 5556666653 678999999999999988877653
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.43 E-value=9.6e-07 Score=91.30 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCCCCCCHHHHHHHHHHhcC----C-CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHH
Q 008443 139 HEYTRPTSIQAQAMPVALSG----R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (565)
Q Consensus 139 ~~~~~~~~~Q~~al~~l~~~----~-~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~ 213 (565)
..+..|++.|++|+..+... + .++|.|+.|||||.+. ..++..+... ....+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------GETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT------TCCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc------CCceEEEecCcHHHHHHHHhh
Confidence 44568899999999977532 3 7999999999999875 5555665553 123699999998877665543
Q ss_pred HHHHHhcCCCceEEEEECCCcHHHHHHHHh------CCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCH
Q 008443 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELR------GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 287 (565)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~ 287 (565)
+ . .....+. . .+. .... .+.. .....+..+++|||||++.+. .
T Consensus 94 ~----~----~~~~T~h------~---~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~iiiDE~~~~~----~ 142 (459)
T 3upu_A 94 S----G----KEASTIH------S---ILKINPVTYEENV-LFEQ---------KEVPDLAKCRVLICDEVSMYD----R 142 (459)
T ss_dssp H----S----SCEEEHH------H---HHTEEEEECSSCE-EEEE---------CSCCCCSSCSEEEESCGGGCC----H
T ss_pred h----c----cchhhHH------H---HhccCcccccccc-hhcc---------cccccccCCCEEEEECchhCC----H
Confidence 3 1 1111100 0 000 0001 1111 112345578999999999764 4
Q ss_pred HHHHHHHHhCCCCCeEEEEecc
Q 008443 288 PQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 288 ~~~~~i~~~~~~~~~~l~~SAT 309 (565)
..+..++..++...+++++.-.
T Consensus 143 ~~~~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 143 KLFKILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp HHHHHHHHHSCTTCEEEEEECT
T ss_pred HHHHHHHHhccCCCEEEEECCH
Confidence 5566777777666666665533
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.43 E-value=2.3e-06 Score=91.89 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
...+++.|.+|+..++.+.-.+|.||+|||||.+. ..++..+... .+.++|+++|+...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999887777899999999999885 4555555542 3668999999999999988887653
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.1e-06 Score=92.86 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
...+++.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++|+++|+...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999987767899999999999875 4455555442 2567999999999999999888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.34 E-value=4.6e-06 Score=91.41 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 141 ~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
...+++.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++|+++|+...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45789999999999887777899999999999875 5555555542 366899999999999988887765
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.34 E-value=4.5e-05 Score=82.62 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..|++.|.+|+.. ....++|.|+.|||||.+.+- -+.+++..... .+.++|++++|+..+.++.+++.+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~-ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVH-RIAWLMSVENC---SPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTSCC---CGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHH-HHHHHHHhCCC---ChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999973 356799999999999998643 34445543211 245799999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.90 E-value=4.1e-05 Score=73.32 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEE
Q 008443 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
...|...+-.++..... .++++|||++.....+.+.+++...++.+..++|.....+ .+ -.+....+.
T Consensus 107 ~SGKf~~L~~LL~~l~~-------~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~ 174 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-------YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVH 174 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-------SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEE
T ss_pred cCccHHHHHHHHHHHHh-------CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEE
Confidence 45666655555554322 2347999999999999999999999999999999854432 11 124555665
Q ss_pred EeccccccCCC-----ccCccEEEEcCCCCCccch-hhhhcccccCC--C--ceeEEEEecccc
Q 008443 429 VATDVASRGLD-----VMGVAHVVNLDLPKTVEDY-VHRIGRTGRGG--S--MGQATSFYTDRD 482 (565)
Q Consensus 429 v~T~~~~~Gid-----ip~v~~Vi~~~~~~s~~~~-~Q~~GRagR~g--~--~g~~~~~~~~~d 482 (565)
+.|....-|+| +...++||.||+.+++..- +|.+-|+.|.| + .-.++.++...-
T Consensus 175 Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 175 LFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp EEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred EEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 55666666776 6789999999999999985 99999999873 3 345566665554
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.58 E-value=0.001 Score=66.03 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+|+|+..+..+...+.+++..+-+.|||.+.+..++..+... .+..+++++|+..-+..+.+.++.++...+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 78999999998875556689999999999998766555544432 366799999999999988888888876543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.30 E-value=0.0029 Score=67.30 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.|+++|+..+..+...+.+++..+-|.|||.+.+..++..+... .+..+++++|+...+..+.+.++.++...+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 58999999998875567799999999999998765555555442 256799999999999999988888876543
Q ss_pred C-ceEEEE-ECCCcHHHHHHHHhCCCeEEEEC--chHHHHHHHcCCCCCCCceEEEecchhhhhh
Q 008443 223 S-FKTAIV-VGGTNIAEQRSELRGGVSIVVAT--PGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 223 ~-~~~~~~-~g~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
. +..... ...... .+..+..|.+.+ +..+. - ..++++|+||+|...+
T Consensus 237 ~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lr----G-----~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 237 DFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVR----G-----NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp TTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHH----H-----SCCSEEEEETGGGCTT
T ss_pred HhhccccccCCccEE-----EecCCCEEEEEeCCCCCcc----C-----CCcceEEEehhccCCc
Confidence 2 111111 011100 112344555443 23322 1 1367899999997643
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.01 E-value=0.0024 Score=56.43 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHh---------cCCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 145 TSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~al~~l~---------~~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.+.|++++..+. .|+.+++.||+|+|||..+ -.+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~ 62 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA-VATLKAI 62 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 445666665543 4677999999999999875 3333433
No 106
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.99 E-value=0.0024 Score=69.65 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcC
Q 008443 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (565)
Q Consensus 142 ~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~ 221 (565)
..|++.|++|+... +..++|.|..|||||.+..-.+ .+++..... ...++|+|+.|+..+.++.+++...++..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri-~~ll~~~~~---~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRI-AYLMAEKHV---APWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHH-HHHHHTTCC---CGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHH-HHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 46899999999863 4679999999999999864444 444443111 24579999999999999999998876421
Q ss_pred CCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCC-C-CCceEEEecchh
Q 008443 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS-L-SRVSFVILDEAD 279 (565)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~-~-~~~~~iIiDE~H 279 (565)
...+-|+|...+...+.+.... + -.-++-|+|+.+
T Consensus 84 -----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 -----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp -----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred -----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 0135688888876544332110 0 012356778766
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.97 E-value=0.0013 Score=66.15 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=63.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 240 (565)
.++.|+.|+|||... ... +. ....+|++||++++..+.+.+.+. +. .
T Consensus 164 ~~I~G~aGsGKTt~I-~~~----~~--------~~~~lVlTpT~~aa~~l~~kl~~~-~~----~--------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI-LSR----VN--------FEEDLILVPGRQAAEMIRRRANAS-GI----I--------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH-HHH----CC--------TTTCEEEESCHHHHHHHHHHHTTT-SC----C---------------
T ss_pred EEEEcCCCCCHHHHH-HHH----hc--------cCCeEEEeCCHHHHHHHHHHhhhc-Cc----c---------------
Confidence 689999999999764 221 11 134799999999998877766432 00 0
Q ss_pred HHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 241 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
.....-|.|.+.++. .......-.+++|||||+-.+ . ...+..++...+. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 001223677666542 111122224899999999854 2 3334455555554 567776655
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00048 Score=61.26 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
|+-.++.|++|+|||... +.++..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeecc
Confidence 445789999999999875 555555544 266799998873
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.015 Score=55.99 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=20.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+.++++.||+|+|||.+. -.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 356999999999999885 555555544
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0015 Score=59.76 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=60.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-.++.|++|+|||... +.++..+.. .+.+++++.|...-- -. ..+... .|-.
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~-------~g~kVli~~~~~d~r--~~---~~i~sr---------lG~~---- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEY-------ADVKYLVFKPKIDTR--SI---RNIQSR---------TGTS---- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEECCCGG--GC---SSCCCC---------CCCS----
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHh-------cCCEEEEEEeccCch--HH---HHHHHh---------cCCC----
Confidence 444788999999999875 666666554 367799998764210 00 001100 0100
Q ss_pred HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 238 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
...+.+.+.+.++..+... ..-..+++|||||++.+... ....+..+.+ . +.++++..-
T Consensus 66 -------~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 66 -------LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFDDR-ICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp -------SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSCTH-HHHHHHHHHH-T--TCEEEEECC
T ss_pred -------ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCcHH-HHHHHHHHHh-C--CCeEEEEec
Confidence 0122345555666655542 22245899999999975321 2223333333 2 455555443
No 111
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.67 E-value=0.0041 Score=55.33 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
|+=.++.|++|+|||... +.++..+.. .+.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~-------~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKI-------AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH-------CCCEEEEEEec
Confidence 444788999999999875 566666554 37789999987
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.64 E-value=0.0031 Score=56.70 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
|+=.++.|++|+|||... +..+..... .+.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~-------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQF-------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH-------CCCEEEEEEecc
Confidence 333678999999999875 666665554 377899999864
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.49 E-value=0.0012 Score=56.30 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++.+++.|++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778999999999999864
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.032 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.4
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
..+++.|++|+|||.++ -.+...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~-~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV-EGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHH
Confidence 56999999999999875 34444443
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.43 E-value=0.019 Score=54.25 Aligned_cols=16 Identities=38% Similarity=0.231 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+|+.||+|+|||.++
T Consensus 66 ~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5999999999999875
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.40 E-value=0.019 Score=56.16 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHh----cCC--C-EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 144 PTSIQAQAMPVAL----SGR--D-LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 144 ~~~~Q~~al~~l~----~~~--~-~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
++|+|.+++..+. +++ + +|+.||.|+|||.++ ..+...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHhC
Confidence 4678888876654 343 2 899999999999876 445555543
No 117
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.32 E-value=0.0057 Score=66.28 Aligned_cols=71 Identities=21% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.|++.|++|+... +..++|.|..|||||.+..-.+...+..... ...++|+|+.|+..+.++.+++...++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4799999999863 5679999999999999864444433333211 245799999999999999999988764
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.013 Score=57.10 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=24.2
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
+..+++.||+|+|||..+ -.+...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~~~~-------~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEAKKR-------GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHHHHT-------TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHC-------CCEEEEEEH
Confidence 357999999999999875 3344444332 344666643
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.29 E-value=0.016 Score=52.70 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
|.=.++.|++|+|||... +..+..... .|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~l-L~~~~r~~~-------~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTEL-MRRVRRFQI-------AQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHHT-------TTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHH-------CCCeEEEEeecC
Confidence 444788999999999775 555555444 377899999865
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.28 E-value=0.017 Score=50.65 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
...+++.|++|+|||.++ -.+...+
T Consensus 43 ~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999875 3344443
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.23 E-value=0.028 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.6
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
+.+++.|++|+|||..+ -.+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 67999999999999875 33444443
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.23 E-value=0.0089 Score=63.24 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhc
Q 008443 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~--~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~ 220 (565)
.+|.-|.+|+..+..- ...++.|+-|.|||.+.-+ ++..+. ..++|.+|+.+-+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~----------~~~~vtAP~~~a~~~l~~----~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA----------GRAIVTAPAKASTDVLAQ----FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS----------SCEEEECSSCCSCHHHHH----HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH----------hCcEEECCCHHHHHHHHH----HhhC
Confidence 6899999999988863 3478999999999965432 223221 137999999877654322 2211
Q ss_pred CCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhCCCHHHHHHHHHhCCCC
Q 008443 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (565)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~ 300 (565)
.|-+..|+.+. ......+++|||||=.+- .+.+..++..++
T Consensus 240 --------------------------~i~~~~Pd~~~-------~~~~~~dlliVDEAAaIp----~pll~~ll~~~~-- 280 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALL-------ASDEQADWLVVDEAAAIP----APLLHQLVSRFP-- 280 (671)
T ss_dssp --------------------------GCCBCCHHHHH-------HSCCCCSEEEEETGGGSC----HHHHHHHHTTSS--
T ss_pred --------------------------CeEEeCchhhh-------hCcccCCEEEEEchhcCC----HHHHHHHHhhCC--
Confidence 02344565543 123358999999998764 666777776443
Q ss_pred CeEEEEeccc
Q 008443 301 HQTLLFSATM 310 (565)
Q Consensus 301 ~~~l~~SAT~ 310 (565)
.++||.|.
T Consensus 281 --~v~~~tTv 288 (671)
T 2zpa_A 281 --RTLLTTTV 288 (671)
T ss_dssp --EEEEEEEB
T ss_pred --eEEEEecC
Confidence 57777776
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.22 E-value=0.027 Score=54.78 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=26.1
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
..++|||||+|.+........+..++...+.+.++|+.+-.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 57899999999886222344455566655556666664443
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.19 E-value=0.058 Score=48.68 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
..-.+|||||+|.+... ....+..++.....+..+++.|..+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 45679999999987532 2344556666666666666655443
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.14 E-value=0.017 Score=50.97 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=27.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
|+=.++.|++|+|||.-. +..+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEccc
Confidence 444789999999999653 5555555443 6779999887
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.07 E-value=0.04 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+..+++.||+|+|||.++ -.+...+
T Consensus 44 ~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 456999999999999875 3344433
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.05 E-value=0.034 Score=55.96 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=35.3
Q ss_pred CCCceEEEecchhhhh---hCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhh
Q 008443 267 LSRVSFVILDEADRML---DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~~---~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
..++++||||++-++. +..+...+..+.....+..-++.++|+...+....+..+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 3578999999997643 233455666676666666667778888654444444433
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.022 Score=56.87 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=23.2
Q ss_pred EEEecchhhhhhCCCHHH-HHHHHHhCCCCCeEEEEeccc
Q 008443 272 FVILDEADRMLDMGFEPQ-IREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 272 ~iIiDE~H~~~~~~~~~~-~~~i~~~~~~~~~~l~~SAT~ 310 (565)
+|||||+|++........ +..++... .+..+|+.|..+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 899999999876532233 44555444 455555555544
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.88 E-value=0.039 Score=52.43 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=29.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCCEEEEccCCCchHHHH
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVA--LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~al~~l--~~~~~~lv~a~TGsGKT~~~ 175 (565)
...|+++.-.....+.+...-.. + ....+.+..+ ...+.+|+.||+|+|||.++
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL-P-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH-H-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-H-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45677776556555555321100 0 0001111111 24457999999999999875
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.74 E-value=0.014 Score=52.39 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
|.=.++.|++|+|||... +..+..+.. .+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~-------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIY-------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCceEEEEecc
Confidence 444689999999999764 555555544 267799999964
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.61 E-value=0.054 Score=55.08 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
.+.+++.||+|+|||..+ -.+...+.... .+..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~-----~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHHHHC-----CSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEeeH
Confidence 357999999999999875 33444443321 1344666544
No 132
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.60 E-value=0.021 Score=66.12 Aligned_cols=109 Identities=23% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCC
Q 008443 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (565)
Q Consensus 143 ~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~ 222 (565)
.+++-|.+++..- +++++|.|..|||||.+.+-.++..+.... ..-...++|+|++|++.+.++.+++...+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~- 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEALEKE- 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 6899999999864 778999999999999986555555444311 00124579999999999999999988865421
Q ss_pred CceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHc
Q 008443 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ 262 (565)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~ 262 (565)
+.. ... .......+..-..+-|+|...+...+.+
T Consensus 85 -~~~----~~~-~~~~~~~~~~~~~~~i~T~hsf~~~~l~ 118 (1232)
T 3u4q_A 85 -LVQ----RPG-SLHIRRQLSLLNRASISTLHSFCLQVLK 118 (1232)
T ss_dssp -HHH----STT-CHHHHHHHHHTTTSEEECHHHHHHHHHH
T ss_pred -hhc----Ccc-hHHHHHHHhccCCCeEEeHHHHHHHHHH
Confidence 000 000 0112222222245678999888655543
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.56 E-value=0.017 Score=53.15 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.++.+++.||+|+|||..+ -.+...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 3567999999999999875 3333433
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.37 E-value=0.038 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=17.9
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.++|+.||+|+|||.++ -.+...+
T Consensus 68 ~~vll~G~~GtGKT~la-~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA-LKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999875 3344443
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.32 E-value=0.022 Score=56.93 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999874
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.24 E-value=0.13 Score=49.78 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||.++
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45999999999999875
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.14 E-value=0.16 Score=44.94 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCceEEEecchhhhhhCCC--HHHHHHHHHhCCCCCeEEEEeccccHHHHHHHH
Q 008443 268 SRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 319 (565)
..+++||+||+-.....++ ...+..++...+...-+|+.+--++.++...+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 5699999999976554442 344566666666667678777777777665544
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.05 E-value=0.18 Score=48.38 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++.+++.||+|+|||.++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4567999999999999875
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.98 E-value=0.2 Score=50.37 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=62.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--CchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~--P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
-++++|++|+|||.+. ..+...+.. .|.+++++. |.+.-+. +.++.+.... ++.+.....+.....
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~-------~G~kVllv~~D~~R~aa~---eqL~~~~~~~-gvpv~~~~~~~dp~~ 169 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQK-------RGYKVGVVCSDTWRPGAY---HQLRQLLDRY-HIEVFGNPQEKDAIK 169 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEECCCSSTHHH---HHHHHHHGGG-TCEEECCTTCCCHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeCCCcchhHH---HHHHHHHHhc-CCcEEecCCCCCHHH
Confidence 3788999999999886 444444433 366777776 4444333 3333333221 222221111111111
Q ss_pred HHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEEEecchhhhhhC-CCHHHHHHHHHhCCCCCeEEEEeccccHHHHH
Q 008443 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (565)
Q Consensus 238 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 316 (565)
. +.+.+.. .....+++||||.+=++... .....+..+.....+..-++.+.|+-..+...
T Consensus 170 i-----------------~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 170 L-----------------AKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp H-----------------HHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred H-----------------HHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 0 0111111 11124778888887543211 12333455555555555566677776544433
Q ss_pred HHHh
Q 008443 317 LAQG 320 (565)
Q Consensus 317 ~~~~ 320 (565)
.+..
T Consensus 231 ~a~~ 234 (443)
T 3dm5_A 231 QALA 234 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 140
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.90 E-value=0.19 Score=48.96 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+|+.||+|+|||.++
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999875
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.86 E-value=0.16 Score=48.71 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=26.3
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
...++|||||+|.+.... ...+.+.++.-++...+++.+..
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEESC
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEECC
Confidence 458899999999886332 33455666655556655555533
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.17 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+..+++.|+.|+|||... -.+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 456999999999999875 3344433
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.17 Score=49.54 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=27.1
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
...++|||||+|.+... ....+..++...+....+++.+..+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCch
Confidence 35689999999987532 2344556666666666666655444
No 144
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.63 E-value=0.15 Score=55.56 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=64.3
Q ss_pred eEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCCCccCccEEEEcC
Q 008443 376 LTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVNLD 450 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~v~~Vi~~~ 450 (565)
++++.++++.-|....+.+.+. ++.+..+||+++..++...++.+.+|+.+|+|+|. .+...+++.++.+||.-.
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEES
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecc
Confidence 5999999999888777766653 78999999999999999999999999999999995 556678888888887644
Q ss_pred C
Q 008443 451 L 451 (565)
Q Consensus 451 ~ 451 (565)
.
T Consensus 499 a 499 (780)
T 1gm5_A 499 Q 499 (780)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.19 Score=49.86 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=29.7
Q ss_pred CCCCcccCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
|-.+|++.+=-.+..+.|...= +..|-.++.-. +...+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4577888864455555543211 01111111111 112356999999999999875
No 146
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.60 E-value=0.58 Score=43.39 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999875
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.54 E-value=0.087 Score=49.43 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.|++|+|||.++
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4567999999999999864
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.52 E-value=0.65 Score=42.12 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=23.0
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
.-.+|||||+|.+... ....+...+...+....+|+.|..
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEESC
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeCC
Confidence 4578999999986422 223344444444445555555543
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.49 E-value=0.24 Score=47.74 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
....+|||||+|.+... ....+..++...+....+++.+..+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 45789999999987532 2344556666666666666654443
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.15 Score=49.72 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
...+++||||+|.+... ....+.++++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987532 2345666777766666666554
No 151
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.25 E-value=0.33 Score=47.77 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=17.6
Q ss_pred CCEEEEccCCCchHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
+.+|+.||+|+|||.++ -.+...
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHH
Confidence 46999999999999875 334443
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.97 E-value=0.073 Score=54.16 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+|+.||+|+|||.++
T Consensus 52 ~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLA 67 (447)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999875
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.21 Score=48.91 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=28.8
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecccc
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 311 (565)
.+.++||+||+|.+ +......+.+++...+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 46789999999984 33334556667777666666776665554
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.91 E-value=0.2 Score=48.27 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=25.3
Q ss_pred CceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEecc
Q 008443 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (565)
Q Consensus 269 ~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 309 (565)
...+|||||+|.+.... ...+.+++...+....+++.|..
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeCC
Confidence 37899999999875321 23345566666666666665543
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.84 E-value=0.21 Score=50.91 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=31.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~ 214 (565)
.|.-++|.|++|+|||..+ +.+...+... .|..++|+..... ..|+..++
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~~~~------~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNVATK------TNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHHHHH------SSCCEEEEESSSC-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHHh------CCCcEEEEECCCC-HHHHHHHH
Confidence 3455899999999999876 4444444432 2556888875433 24444444
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.66 E-value=0.25 Score=51.31 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCceEEEecchhhhhhCC--CHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 268 SRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
....+|||||+|.+.... ....+..++... +.++++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 346789999999886432 224455555553 34577777765
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.66 E-value=0.52 Score=45.38 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+++.||+|+|||.++
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999875
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.61 E-value=0.16 Score=52.16 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 356999999999999875
No 159
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.56 E-value=0.16 Score=49.96 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||.++
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999875
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.54 E-value=0.46 Score=47.32 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999875
No 161
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.22 E-value=0.31 Score=49.53 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (565)
|.-++|.|++|+|||..+ +.+...+... .+..++|+.... -..|+..++.......+.-.. ..|.....+
T Consensus 200 G~l~ii~G~pg~GKT~la-l~ia~~~a~~------~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~ 269 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFA-LTIAQNAALK------EGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRV--RLGQLTDRD 269 (444)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHHT------TCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTC--CGGGCCHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHH--hCCCCCHHH
Confidence 345899999999999765 4454444432 255688877643 234555554332222111010 123233333
Q ss_pred HHHH------HhCCCeEEEE-----CchHHHHHHHcCCCCCCCceEEEecchhhhhh
Q 008443 238 QRSE------LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (565)
Q Consensus 238 ~~~~------~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~H~~~~ 283 (565)
+... +. ...+.+- |...+...+..- ..-..+++||||..+.+..
T Consensus 270 ~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l-~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 270 FSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRL-VSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHH-HHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEcChhhcCC
Confidence 3221 22 2345553 233333222210 0012588999999998753
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.10 E-value=0.16 Score=50.88 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.2
Q ss_pred CEEE--EccCCCchHHHHHHHHHHH
Q 008443 160 DLLG--CAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 160 ~~lv--~a~TGsGKT~~~~l~~~~~ 182 (565)
.++| .|+.|+|||.+. -.+...
T Consensus 52 ~~li~i~G~~G~GKT~L~-~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA-KFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHH-HHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH-HHHHHH
Confidence 4788 899999999875 334443
No 163
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.69 Score=46.40 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|||||+.+
T Consensus 207 rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999875
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.88 E-value=0.97 Score=44.39 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=23.8
Q ss_pred CCceEEEecchhhhhhCCCHHHHHHHHHhCCCCCeEEEEec
Q 008443 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (565)
Q Consensus 268 ~~~~~iIiDE~H~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 308 (565)
....+|||||+|.+... ....+.+.+...+....+|+.+.
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEES
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 45679999999987532 22334455555555554555443
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.70 E-value=0.39 Score=49.08 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=40.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
.+....+.|.||+|||++. ..++.. .+..+|||+|+...+.|+++.++.+++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4556899999999999864 223322 134489999999999999999998864
No 166
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.58 E-value=0.25 Score=49.62 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=62.7
Q ss_pred CeEEEEEcchhhHHHHHHHHHH---CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc-----cccCCCccCccEE
Q 008443 375 PLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----ASRGLDVMGVAHV 446 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~Gidip~v~~V 446 (565)
+++||.++++.-+..+++.+.. .++.+..++|+.+..++....+.+..|+.+|+|+|.- +.. ++..++++|
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~i 143 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFV 143 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEE
Confidence 4699999999999999999988 5889999999999999888999999999999999952 222 445577777
Q ss_pred EEcCC
Q 008443 447 VNLDL 451 (565)
Q Consensus 447 i~~~~ 451 (565)
|.-..
T Consensus 144 ViDEa 148 (414)
T 3oiy_A 144 FVDDV 148 (414)
T ss_dssp EESCH
T ss_pred EEeCh
Confidence 75443
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.83 E-value=4 Score=39.37 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.6
Q ss_pred ceEEEecchhhhhh---CCCHHHHHHHHHhCCCCCeEEEEe
Q 008443 270 VSFVILDEADRMLD---MGFEPQIREVMQNLPDKHQTLLFS 307 (565)
Q Consensus 270 ~~~iIiDE~H~~~~---~~~~~~~~~i~~~~~~~~~~l~~S 307 (565)
--+|||||+|.+.. ..+...+..+....+ +..+|+.+
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 34899999999864 346666666666543 44444443
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.37 E-value=0.16 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=16.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
++++.||+|+|||.++ -.+...
T Consensus 40 ~~ll~G~~G~GKt~la-~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA-IALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHH-HHHHHH
T ss_pred eEEEECcCCcCHHHHH-HHHHHH
Confidence 5999999999999875 333333
No 169
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.24 E-value=0.31 Score=46.79 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHH-hcCCCCCCCCCeEEEEc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCV-AQTPVGRGDGPLALVLA 201 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~-~~~~~~~~~~~~~Lil~ 201 (565)
++++++.||+|+|||..+ ..+...+. .. +..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~~~~-------g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELSEKK-------GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHHHHS-------CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHHHhc-------CCcEEEEE
Confidence 567999999999999875 34444444 32 45566654
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.08 E-value=0.17 Score=42.29 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=16.9
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..+.++++.|++|+|||.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45678999999999999764
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.77 E-value=0.2 Score=42.02 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+.++++.|++|+|||.++
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 5568999999999999875
No 172
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.85 E-value=0.3 Score=45.61 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.1
Q ss_pred HhcCCCEEEEccCCCchHHHH
Q 008443 155 ALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 155 l~~~~~~lv~a~TGsGKT~~~ 175 (565)
+..|.-++++||||+|||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346667899999999999863
No 173
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.84 E-value=1.1 Score=40.93 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+++.|++|+|||..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4566899999999999875
No 174
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.79 E-value=3.9 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=21.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+-+.+.|+.|+|||.... .+...+.. .+.+++++-
T Consensus 99 ~~i~i~g~~G~GKTT~~~--~la~~~~~------~~~~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAA--KLALYYKG------KGRRPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHH--HHHHHHHH------TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEec
Confidence 346678999999998752 23333332 255676665
No 175
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.79 E-value=3.6 Score=36.05 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
++++||.++++.-+..+.+.++.. ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCccc
Confidence 456999999999999888888765 46788889988765544333 3678999999 33333 356677
Q ss_pred ceEEEecc
Q 008443 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 176
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.40 E-value=0.92 Score=51.61 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=63.4
Q ss_pred CeEEEEEcchhhHHHHHHHHHH---CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc-----cccCCCccCccEE
Q 008443 375 PLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----ASRGLDVMGVAHV 446 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~Gidip~v~~V 446 (565)
.++||.++++.-|..+.+.|.. .++.+..+||+.+..+|...++.+..|..+|+|+|.- +.. +++.++++|
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~l 200 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFV 200 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEE
T ss_pred CeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEE
Confidence 3699999999999999999998 5779999999999989999999999999999999952 222 455678888
Q ss_pred EEcCC
Q 008443 447 VNLDL 451 (565)
Q Consensus 447 i~~~~ 451 (565)
|.-..
T Consensus 201 ViDEa 205 (1104)
T 4ddu_A 201 FVDDV 205 (1104)
T ss_dssp EESCH
T ss_pred EEeCC
Confidence 76443
No 177
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.25 E-value=1.3 Score=50.61 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=63.1
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEec-cccccCCCccCccEEEE
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVASRGLDVMGVAHVVN 448 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidip~v~~Vi~ 448 (565)
.+++|.|+++.-|....+.|.+. ++.+..+++..+..++...++.+..|+.+|+|+| ..+...+.+.++++||.
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 36999999999888888777643 6788999999999999999999999999999999 56677788888888775
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.11 E-value=0.29 Score=47.50 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=33.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|.-++|.|++|+|||..+ +.+...+.. .+..++|+... .-..|+..++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHH
Confidence 4555899999999999875 444444443 26678888764 3345555555433
No 179
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.06 E-value=0.85 Score=49.86 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
..+++++|++|+|||.++
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 456999999999999875
No 180
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.92 E-value=2.8 Score=35.58 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=52.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+| +.+ . ..+++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~~~----~-~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVA----A-RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGG----T-TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-Chh----h-cCCchhc
Confidence 557999999999999888887764 56788889987765544333 3578899999 222 2 2356677
Q ss_pred ceEEEecch
Q 008443 270 VSFVILDEA 278 (565)
Q Consensus 270 ~~~iIiDE~ 278 (565)
+++||.-+.
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888886443
No 181
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.73 E-value=0.38 Score=48.36 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 117 PAPIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 117 p~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
..|..+|++++--....+.|...= +..|..++... +...+.+|+.||+|||||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 456678999977776666653211 11111111111 112356999999999999875
No 182
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=88.54 E-value=0.44 Score=41.23 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhcCCC--EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 145 TSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~--~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
.+-|..++..++..++ .+|.+.-|++||...+-.++....+ .|.++.+|+|+..-..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHH
Confidence 4678999999876553 7889999999998753333333222 5889999999865544
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.38 E-value=0.74 Score=42.14 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=32.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
.|.-+++.|++|+|||..+ +.++..... .+..++|+.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~-------~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLK-------MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEccC-CHHHHHHHHH
Confidence 4566899999999999875 444444443 255688887543 3445555444
No 184
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.55 E-value=0.71 Score=46.69 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=33.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
...+++|.|+||+|||... -.++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3467999999999999874 4555555553 667888889888754
No 185
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.50 E-value=4.3 Score=36.96 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCeEEEEEcchhhHHHHHHHHHH----CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccc-cCCCccCc
Q 008443 374 FPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMGV 443 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~v 443 (565)
..++||.++++.-+..+.+.+.. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45699999999998887766655 37889999999887665544432 478999995 222 24566777
Q ss_pred cEEEEcC
Q 008443 444 AHVVNLD 450 (565)
Q Consensus 444 ~~Vi~~~ 450 (565)
++||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 7776533
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.41 E-value=1.4 Score=43.05 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.||||+|||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3446899999999999863
No 187
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.19 E-value=5.8 Score=33.56 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=51.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.++.. ++.+..++|+....+....+ .+..+|+|+|. .+ . ..+++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~-~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LL----A-RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GG----T-TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hh----h-cCCCccc
Confidence 567999999999998888877763 56788888987765544333 36789999992 22 2 2356667
Q ss_pred ceEEEecc
Q 008443 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887644
No 188
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=86.16 E-value=4.2 Score=34.85 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=51.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-VC-----ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-SC-----CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-ch-----hcCCCccc
Confidence 567999999999998888777653 56788899988766554333 35789999993 11 22356778
Q ss_pred ceEEEe
Q 008443 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 189
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.04 E-value=9.5 Score=32.51 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=52.7
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CC-----STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-ch-----hcCcchhh
Confidence 457999999999999888887764 56788888988766544333 36789999993 22 12356667
Q ss_pred ceEEEecch
Q 008443 270 VSFVILDEA 278 (565)
Q Consensus 270 ~~~iIiDE~ 278 (565)
+++||.-+.
T Consensus 100 ~~~Vi~~d~ 108 (172)
T 1t5i_A 100 VNIAFNYDM 108 (172)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEECC
Confidence 888876443
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.90 E-value=10 Score=36.34 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=31.7
Q ss_pred CceEEEecchhhhh-hCCCHHHHHHHHHhCCCCCeEEEEeccccHHHHHHHHhh
Q 008443 269 RVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQGY 321 (565)
Q Consensus 269 ~~~~iIiDE~H~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 321 (565)
..+++++|.+-+.. +..+...+..+...+.+...++.+.++-..+....+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678888876532 223444555555555566667778877765555544443
No 191
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.81 E-value=4.1 Score=36.86 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-c----ccc--CCCccC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASR--GLDVMG 442 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~~--Gidip~ 442 (565)
..++||.++++.-+..+.+.+... ++.+..++|+.+.......+ +..+|+|+|. . +.. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 346999999999999988888765 47788889987655443332 4578999995 1 122 245555
Q ss_pred ccEEEE
Q 008443 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 665554
No 192
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.67 E-value=2.9 Score=37.39 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=51.3
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC-----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc-----c-ccCCCccCc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----A-SRGLDVMGV 443 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~~Gidip~v 443 (565)
.++||.|+++.-+..+++.+... ++.+..++|+.+..... +.+.++..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 36999999999999988887765 67889999998765544 3345567789999951 1 233455666
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66654
No 193
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.58 E-value=1.4 Score=44.09 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHHHHh--cCCCEEEEccCCCchHHH
Q 008443 148 QAQAMPVAL--SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 148 Q~~al~~l~--~~~~~lv~a~TGsGKT~~ 174 (565)
+..++..+. .+.-++|.||||+|||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 444454443 334588999999999986
No 194
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.51 E-value=1 Score=48.97 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||.|+|||+++
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999874
No 195
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.36 E-value=0.48 Score=47.74 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=31.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCCHH-HHHHHHHH--hcCCCEEEEccCCCchHHHH
Q 008443 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSI-QAQAMPVA--LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-Q~~al~~l--~~~~~~lv~a~TGsGKT~~~ 175 (565)
.|-.+|++.+=-.+..+.|...=. .|. .-+.+..+ ...+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 455778888766666666532110 000 00111111 12356999999999999875
No 196
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.15 E-value=5.2 Score=35.64 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=52.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+| +... ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCcc
Confidence 567999999999999888888765 56788899998776554433 3678899999 2222 2366778
Q ss_pred ceEEEe
Q 008443 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.11 E-value=0.68 Score=46.55 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|||||+.+
T Consensus 216 rGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999875
No 198
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.35 E-value=2.2 Score=40.48 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
...+++.||+|+|||.++
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999875
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.28 E-value=3.8 Score=44.87 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++.++++||+|+|||.++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4567999999999999864
No 200
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.08 E-value=0.95 Score=41.48 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHH-HHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQH-CVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~-~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-+++.|++|+|||..+ +.++.. +... +..++|+.-. +-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~-l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFA-AQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHH
Confidence 3456899999999999765 443333 3332 4557887754 334445444443
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.62 E-value=1.7 Score=51.93 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHhc------CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 152 MPVALS------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 152 l~~l~~------~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
++.++. ++.++++||+|+|||..+ ..+...... +|.+++|+.....+..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA-~ala~ea~~-------~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEECTTSCCCH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEEcccccCH
Confidence 555555 678999999999999987 444444333 3778999987655433
No 202
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.54 E-value=0.95 Score=40.51 Aligned_cols=37 Identities=22% Similarity=0.073 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHHHHHHHHHH
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+.-|..++..+..|.-+.+.||.|+|||.. +.++.-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 445778888888888899999999999986 4444443
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.39 E-value=1.4 Score=40.70 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+++.||+|+|||.++
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 45899999999999875
No 204
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=82.37 E-value=2.2 Score=44.17 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=53.7
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
+++||.++++.-+....+.|...++.+..++++.+..++..+...+..|..+|+++|+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3699999999999999999999999999999999999999999999999999999995
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.30 E-value=1.5 Score=43.08 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
...+|+.||+|+|||.++
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999875
No 206
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.17 E-value=2 Score=41.32 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||..+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56999999999999875
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.14 E-value=8.3 Score=38.48 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=21.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
-++++|+.|+|||.+.. .+ ...+.. .+.+++++.
T Consensus 100 vi~i~G~~GsGKTT~~~-~L-A~~l~~------~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA-KL-ALYYKG------KGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHH-HH-HHHHHT------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHH-HH-HHHHHH------cCCeEEEee
Confidence 36778999999998753 23 333332 355676665
No 208
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.05 E-value=14 Score=38.38 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=57.9
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
.+.++||.++++.-+..+.+.++..+.. ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh-cCCCcc
Confidence 3678999999999999999999887653 56788889988766544333 46799999993 332 246777
Q ss_pred CceEEEecch
Q 008443 269 RVSFVILDEA 278 (565)
Q Consensus 269 ~~~~iIiDE~ 278 (565)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8888886543
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.00 E-value=2.7 Score=40.24 Aligned_cols=52 Identities=13% Similarity=0.002 Sum_probs=33.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|.-++|.|++|+|||..+ +.+...+..+ +..++|+.-. .-..|+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~-l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHHH
Confidence 4556899999999999765 4444444332 4668888764 4445555555544
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.99 E-value=1.4 Score=45.16 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 149 AQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 149 ~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
..++..+..+.++|+.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344555667889999999999999864
No 211
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.87 E-value=0.91 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.1
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.++.++.|.+ ++..|.||||||+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 5566678887 788999999999874
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=81.75 E-value=8.9 Score=39.25 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=24.0
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
.++++|++|+|||.++ ..+...+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~-~kLA~~l~~-------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC-SKLAYYYQR-------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEec
Confidence 3778999999999876 444444433 2666777764
No 213
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.73 E-value=0.7 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHhcCCCEEEEccCCCchHHHH
Q 008443 152 MPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 152 l~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
+..+..++++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334456789999999999999864
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.27 E-value=2 Score=38.14 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC----CCEEEEccCCCchHHHHHHHHHHH
Q 008443 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~al~~l~~~----~~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
..+.+-|...++. +-.+ ..++..++.+ +.+++.||.|+|||..+ ..++..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 4566666655532 3333 3344444444 24899999999999875 444443
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.19 E-value=0.68 Score=46.17 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 56999999999999875
No 216
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=80.97 E-value=2.4 Score=44.58 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhh--hcCCeeEEEecc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF--RNGSTNILVATD 432 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLv~T~ 432 (565)
+.+||.++++.-+....+.|...|+.+..++|+++..++..++..+ ..+..+|+++|+
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3699999999999999999999999999999999999998888888 578899999997
No 217
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.96 E-value=3.3 Score=38.39 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCCHHHH-HHHHHHhcCC-----CEEEEccCCCchHHHH
Q 008443 130 PSIMKDIEFHEYTRPTSIQA-QAMPVALSGR-----DLLGCAETGSGKTAAF 175 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~-~al~~l~~~~-----~~lv~a~TGsGKT~~~ 175 (565)
..+.+-|+..|+. +.+- .++...++++ .+++.||.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4677778777764 5542 2344455443 3899999999999876
No 218
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.96 E-value=12 Score=34.08 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=50.8
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccc--cCCCccCc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS--RGLDVMGV 443 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~v 443 (565)
.++||.++++.-+..+++.+... ++.+..++|+.........+ .+..+|+|+|. .+. .++++..+
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~ 187 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRAL 187 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcccc
Confidence 36999999999998888777664 78889999988765543332 24678999994 222 35667777
Q ss_pred cEEEEc
Q 008443 444 AHVVNL 449 (565)
Q Consensus 444 ~~Vi~~ 449 (565)
++||.-
T Consensus 188 ~~lViD 193 (249)
T 3ber_A 188 KYLVMD 193 (249)
T ss_dssp CEEEEC
T ss_pred CEEEEc
Confidence 777653
No 219
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.93 E-value=1.6 Score=39.31 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=18.9
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
++++.++.|+|||..+ +.+...+..
T Consensus 8 ~I~~~~kgGvGKTt~a-~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM-LQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 5899999999999986 444444444
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.86 E-value=1.3 Score=43.23 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~ 207 (565)
|.-++|.||+|+|||..+ +.++..+.. .+.+++|+.....+-
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~-------~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK-------MGGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEecccccc
Confidence 445899999999999875 555544443 256689988765553
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.86 E-value=1.4 Score=39.72 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=28.9
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~ 215 (565)
.|.-+++.|++|+|||... ..+...+... +..++|+.... ...++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~ 71 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS-LHFIAKGLRD-------GDPCIYVTTEE-SRDSIIRQAK 71 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH-HHHHHHHHHH-------TCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHHHHC-------CCeEEEEEccc-CHHHHHHHHH
Confidence 4566899999999999765 3333333322 44577766432 2334444443
No 222
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=80.66 E-value=4 Score=36.79 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=49.7
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC-----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc-----c-ccCCCccCc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----A-SRGLDVMGV 443 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~~Gidip~v 443 (565)
.++||.|+++.-+..+.+.+... ++.+..++|+....++...+ ...+|+|+|.- + ...+++.++
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 167 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSI 167 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccC
Confidence 46999999999999998888764 67788899998766554433 24789999952 1 234556666
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 168 ~~lVi 172 (230)
T 2oxc_A 168 RLFIL 172 (230)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 66654
No 223
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.50 E-value=1.1 Score=43.07 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455568877 678999999999874
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.34 E-value=2.3 Score=40.16 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+++.||+|+|||.++
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457999999999999875
No 225
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=79.93 E-value=2.9 Score=36.85 Aligned_cols=31 Identities=29% Similarity=0.251 Sum_probs=19.6
Q ss_pred EEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 163 GCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 163 v~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
..+..|+|||.++ ..+...+.. .|.+++++=
T Consensus 7 ~s~kgG~GKTt~a-~~la~~la~-------~g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAV-INIATALSR-------SGYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHH-HHHHHHHHH-------TTCCEEEEE
T ss_pred EeCCCCccHHHHH-HHHHHHHHH-------CCCeEEEEE
Confidence 3467889999987 333333333 266777775
No 226
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.80 E-value=4.2 Score=36.53 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=46.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC---CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----c-cccCCCccCcc
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----V-ASRGLDVMGVA 444 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~v~ 444 (565)
..++||.++++.-+..+.+.+... ++.+..++|+.+...+...+ . ...+|+|+|. . ....+++.+++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 446999999999999999988874 67888888887655443332 2 3478999994 1 22345566666
Q ss_pred EEEE
Q 008443 445 HVVN 448 (565)
Q Consensus 445 ~Vi~ 448 (565)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 227
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.69 E-value=7.7 Score=29.57 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=44.8
Q ss_pred EEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEE
Q 008443 377 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 377 ~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
.++|...-+-..++...++..|+.++.++++.....|.+-++.|....+++-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 5778888888888999999999999999999999999999999987655543
No 228
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=79.68 E-value=1.1 Score=43.44 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455567877 678999999999873
No 229
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.62 E-value=6 Score=34.69 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=50.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC--CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccc-cCCCccCccE
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMGVAH 445 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~v~~ 445 (565)
..++||.|+++.-+..+.+.+... .+.+..++|+.........+. ...+|+|+|. .+. ..+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 446999999999999999998876 467888888877554433332 2467999995 222 2455666777
Q ss_pred EEE
Q 008443 446 VVN 448 (565)
Q Consensus 446 Vi~ 448 (565)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.59 E-value=2 Score=40.83 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
++.++++|++|+|||.+... +...+... .|.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~--LA~~l~~~-----~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK--LAAISMLE-----KHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH--HHHHHHHT-----TCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHH--HHHHHHHh-----cCCEEEEEe
Confidence 44588999999999987532 22233210 255677665
No 231
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.52 E-value=19 Score=37.56 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
.+.++||.++++.-+..+++.++..+.. ++.+..++|+....+....+ .+..+|||+|. .+.. .+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~-GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc-CCCcc
Confidence 3678999999999999999999887653 56788889988765544333 46789999993 3322 46777
Q ss_pred CceEEEecchh
Q 008443 269 RVSFVILDEAD 279 (565)
Q Consensus 269 ~~~~iIiDE~H 279 (565)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 88888865543
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.40 E-value=1.5 Score=42.80 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=29.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
.|+-+++.|+.|+|||..+ +.++..+... +.+++|+.....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~~~~-------g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAAQRE-------GKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeCCCCc
Confidence 3456899999999999886 4455444442 5568888875444
No 233
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.34 E-value=1.3 Score=45.73 Aligned_cols=40 Identities=20% Similarity=-0.012 Sum_probs=25.9
Q ss_pred HHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCchHHH
Q 008443 133 MKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~al~~-l~~~~~~lv~a~TGsGKT~~ 174 (565)
+..+...|. +.+.+...+.. +..|..++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344445552 34444444443 34677899999999999976
No 234
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.18 E-value=1.3 Score=43.06 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445567876 678999999999863
No 235
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.12 E-value=1.3 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4455668877 678999999999763
No 236
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=79.09 E-value=1.6 Score=41.72 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=31.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~ 208 (565)
-+++.||.|+|||... +.++..+... +.+.+++|+.....+..
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~-----g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQ-----YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHH-----CTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeccchhhH
Confidence 5899999999999886 5555554442 12667999998777744
No 237
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.97 E-value=12 Score=34.38 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=49.5
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccc--cCCCccC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS--RGLDVMG 442 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 442 (565)
..++||.++++.-+..+.+.+.+. +..+..+.|+........ .+..| .+|+|+|. .+. .++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 346999999999999988888764 567778888876554333 33344 78999994 222 2466777
Q ss_pred ccEEEE
Q 008443 443 VAHVVN 448 (565)
Q Consensus 443 v~~Vi~ 448 (565)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777765
No 238
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.95 E-value=1.3 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.4
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455568877 678999999999874
No 239
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.84 E-value=1.3 Score=43.24 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4445567877 678999999999873
No 240
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.83 E-value=3.7 Score=37.24 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=43.2
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----cccc-CCCccCcc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMGVA 444 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~v~ 444 (565)
.++||.++++.-+..+.+.+... ++.+..++|+.... ...+.+..+..+|+|+|. .+.. .+++..++
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCc
Confidence 46999999999999998888765 46677777776533 233455667789999993 3333 34556666
Q ss_pred EEEE
Q 008443 445 HVVN 448 (565)
Q Consensus 445 ~Vi~ 448 (565)
+||.
T Consensus 176 ~lVi 179 (237)
T 3bor_A 176 MFVL 179 (237)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 241
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=78.79 E-value=1.3 Score=42.92 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.++.++.|.+ ++..|.||||||+..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4445567877 678999999999873
No 242
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.77 E-value=1.4 Score=42.56 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=20.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 150 ~al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
..+..++.|.+ ++..|.||||||+..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778887 678999999999764
No 243
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.74 E-value=1.3 Score=43.08 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.4
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455567877 678999999999874
No 244
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=78.62 E-value=1.3 Score=42.93 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555668877 678999999999764
No 245
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=78.55 E-value=1.4 Score=43.06 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556668887 677999999999873
No 246
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.52 E-value=0.78 Score=44.24 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+-++|+||||+|||.++
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999876
No 247
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.46 E-value=1.4 Score=43.01 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.++.++.|.+ ++..|.||||||+..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4555668887 678999999999874
No 248
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.44 E-value=1.5 Score=40.84 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+++.||+|+|||.++
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 346899999999999875
No 249
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.20 E-value=1.4 Score=43.10 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.6
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555668877 678999999999763
No 250
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.18 E-value=4.7 Score=35.00 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=42.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHH----HHhCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.++.. ++.+..+.|+....+... ...+..+|+|+| +.+. ..+++.+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~-----~Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAA-----RGLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-C-----------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-Chhh-----cCCCccc
Confidence 567999999999998888877663 467788888765443322 234678999999 2222 1245667
Q ss_pred ceEEEe
Q 008443 270 VSFVIL 275 (565)
Q Consensus 270 ~~~iIi 275 (565)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 787776
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.08 E-value=2.4 Score=40.81 Aligned_cols=63 Identities=21% Similarity=0.106 Sum_probs=35.1
Q ss_pred HHHHHhc-----CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh-HHHHHHHHH
Q 008443 151 AMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL-AQQIEKEVK 215 (565)
Q Consensus 151 al~~l~~-----~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L-~~Q~~~~~~ 215 (565)
.++.++. |.-+++.|++|+|||..+ +.++..+..... ..+.+.+++|+.-...+ ..++.+.++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555553 345899999999999876 333333221100 01125578888866543 344444443
No 252
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=77.88 E-value=8.5 Score=38.59 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=26.5
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--CchhhHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQ 208 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~--P~~~L~~ 208 (565)
.++++|++|+|||.+. ..+...+..+ .|.+++++. |.+..+.
T Consensus 102 vI~ivG~~GvGKTT~a-~~LA~~l~~~------~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV-GKLGKFLREK------HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT------SCCCEEEEECCCSSTTHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHh------cCCeEEEEecCCCCccHH
Confidence 3677899999999886 4444444331 166777776 4444443
No 253
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=77.79 E-value=11 Score=37.11 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=53.3
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
.+.++||.++++.-+..+.+.+++. ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcc
Confidence 4678999999999999888877763 56788889988765544333 3678999999 33333 36677
Q ss_pred CceEEEe
Q 008443 269 RVSFVIL 275 (565)
Q Consensus 269 ~~~~iIi 275 (565)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 254
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.79 E-value=0.98 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++-+++.||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3456899999999999765
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.76 E-value=1.3 Score=42.00 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=15.7
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~ 181 (565)
++|+||||+|||.++ ..+.+
T Consensus 13 i~i~GptgsGKt~la-~~La~ 32 (316)
T 3foz_A 13 IFLMGPTASGKTALA-IELRK 32 (316)
T ss_dssp EEEECCTTSCHHHHH-HHHHH
T ss_pred EEEECCCccCHHHHH-HHHHH
Confidence 688999999999876 44443
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.73 E-value=1.1 Score=42.76 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEccCCCchHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
-++|.||||+|||.++ ..+..
T Consensus 5 ~i~i~GptgsGKt~la-~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS-VMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCcCCHHHHH-HHHHH
Confidence 3688999999999876 44433
No 257
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.56 E-value=1.6 Score=42.42 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778887 678999999999874
No 258
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.47 E-value=1.4 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3445567876 678999999999874
No 259
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.45 E-value=1.4 Score=43.06 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455668876 678999999999764
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.36 E-value=2 Score=41.84 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
|+-+++.|+.|+|||..+ +.++..+.. .+.+++|+.-...+
T Consensus 61 G~iv~I~G~pGsGKTtLa-l~la~~~~~-------~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVA-LHAVANAQA-------AGGIAAFIDAEHAL 101 (349)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSCCC
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEECCCCc
Confidence 456899999999999876 444444443 25668888765433
No 261
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.27 E-value=1.1 Score=38.88 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666899999999999864
No 262
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.22 E-value=1.4 Score=41.73 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+|+.||+|+|||.++
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999875
No 263
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.17 E-value=1.6 Score=41.57 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
....+|+.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999875
No 264
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.16 E-value=1.4 Score=42.77 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677778887 677999999999874
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.15 E-value=1.7 Score=38.40 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++.+++.|++|+|||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5677999999999999875
No 266
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.04 E-value=3.2 Score=41.13 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=29.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
.+.+++|.|+||+|||..... ++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcCH
Confidence 456799999999999986533 3333333 26678888887664
No 267
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=76.91 E-value=1.5 Score=43.10 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445567876 678999999999763
No 268
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.87 E-value=19 Score=32.71 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=48.4
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccc-cCCCccCcc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMGVA 444 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~v~ 444 (565)
.++||.|+++.-+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 47999999999998888877654 56788888887655443322 24578999995 222 234666677
Q ss_pred EEEE
Q 008443 445 HVVN 448 (565)
Q Consensus 445 ~Vi~ 448 (565)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 269
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.87 E-value=2.4 Score=43.02 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
++.+|+.||+|+|||.++
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999876
No 270
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.74 E-value=1.5 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445567876 678999999999874
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.66 E-value=1.6 Score=42.94 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=16.5
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..|..++++||||+|||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999863
No 272
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.41 E-value=1.7 Score=43.20 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778887 678999999999874
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.40 E-value=4.1 Score=38.11 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=33.7
Q ss_pred HHhcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCC-C--CCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-R--GDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~-~--~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.+..|.-++|.|+.|+|||..+. .++..+....... . ..+..++|+.-...+ .++...+..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~-~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLAL-QLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHAL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHH-HHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHH-HHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHH
Confidence 34467779999999999998753 3333332210000 0 013457787755443 4444444443
No 274
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.14 E-value=1.7 Score=43.66 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4455568877 678999999999874
No 275
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=76.11 E-value=7.8 Score=37.91 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=53.1
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC-----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-cc-----ccCCCccCc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMGV 443 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidip~v 443 (565)
.++||.|+++.-+..+++.+... ++.+..++|+.+...... .+..+..+|+|+|. .+ ...+++.++
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 153 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 153 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 46999999999999988888765 788999999987655443 34557778999994 11 234567778
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 154 ~~vVi 158 (391)
T 1xti_A 154 KHFIL 158 (391)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87775
No 276
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.10 E-value=7.5 Score=36.79 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=52.5
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|. ... ..+++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~-~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA-RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT-CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh-cCccccc
Confidence 567999999999888777776553 57788899987765544333 46789999992 222 2466778
Q ss_pred ceEEEecch
Q 008443 270 VSFVILDEA 278 (565)
Q Consensus 270 ~~~iIiDE~ 278 (565)
+++||.=+.
T Consensus 97 v~~VI~~d~ 105 (300)
T 3i32_A 97 VDLVVHYRM 105 (300)
T ss_dssp CSEEEESSC
T ss_pred eeEEEEcCC
Confidence 888885333
No 277
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=75.94 E-value=0.56 Score=44.13 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHH-HHHHHHHHh--cCCCEEEEccCCCchHHHH
Q 008443 120 IESFTDMCLHPSIMKDIEFHEYTRPTSI-QAQAMPVAL--SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~-Q~~al~~l~--~~~~~lv~a~TGsGKT~~~ 175 (565)
...|++++-..++.+.+...-. .|+ ..+++..+- -.+.+++.||.|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3567777655556555532110 111 112333221 1234999999999999864
No 278
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.94 E-value=1.9 Score=36.15 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=18.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.+|+||+|+|||.+ +.++..++.
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l~ 48 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGLY 48 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHHc
Confidence 68999999999986 666666553
No 279
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.90 E-value=4.9 Score=46.17 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=44.3
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCC----CCCCCCCeEEEEcCchhhHHHHHHHHHHHHh
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTP----VGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~----~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~ 219 (565)
..+|.|.-|||||.+..-.++..++.... ...-...++|+|+=|++-+.++.+++...+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999876666666654210 0001245799999999999999999888764
No 280
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.81 E-value=1.5 Score=42.99 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566678887 677999999999874
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.78 E-value=1.7 Score=40.15 Aligned_cols=15 Identities=40% Similarity=0.197 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
++|+|+||||||.++
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 689999999999876
No 282
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.64 E-value=1.8 Score=43.02 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=20.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||++.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667778887 678999999999874
No 283
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.63 E-value=2 Score=37.95 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+-+.++||+|+|||.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999863
No 284
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.49 E-value=1.8 Score=42.41 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=20.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..++.|.+ ++..|.||||||+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666778887 678999999999764
No 285
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.42 E-value=8.3 Score=33.76 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=48.1
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC-----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----cccc-CCCccCc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMGV 443 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~v 443 (565)
.++||.++++.-+..+.+.+... +..+..++|+....+... .+ .+..+|+|+|. .+.. .+++.++
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 147 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDHV 147 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcccC
Confidence 46999999999999888887664 567888888877544322 22 34678999995 2222 3355666
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 148 ~~lVi 152 (206)
T 1vec_A 148 QMIVL 152 (206)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66665
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.41 E-value=1.9 Score=37.28 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+++.|++|+|||.++
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999876
No 287
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=75.29 E-value=2.5 Score=41.47 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.0
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L 206 (565)
|.-++|.|++|+|||..+ +.++..+... +..++|+.....+
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~~~-------g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQKA-------GGTCAFIDAEHAL 114 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESSCCC
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHHHC-------CCeEEEEECCCCh
Confidence 456899999999999876 5555554442 5568888876443
No 288
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.09 E-value=1.5 Score=43.10 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=18.1
Q ss_pred HHHhcCCC--EEEEccCCCchHHHH
Q 008443 153 PVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 153 ~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
..++.|.+ ++..|.||||||+..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44557876 678999999999764
No 289
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.03 E-value=1.9 Score=42.33 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.4
Q ss_pred HhcCCCEEEEccCCCchHHH
Q 008443 155 ALSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 155 l~~~~~~lv~a~TGsGKT~~ 174 (565)
+..|..++++|+||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34788899999999999986
No 290
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.73 E-value=3.1 Score=39.54 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+.-+.++||+|+|||.. +..+..++.. .++++++..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~~------~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQN------LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHHT------TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHHh------cCCEEEEEe
Confidence 34578899999999986 4444444442 245566654
No 291
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.13 E-value=2.7 Score=37.50 Aligned_cols=37 Identities=16% Similarity=-0.032 Sum_probs=24.6
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
.|.-+++.|++|+|||..+.. ++. . .+..++|+.-..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~-l~~---~-------~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ-TGL---L-------SGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHH---H-------HCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHH---H-------cCCcEEEEECCC
Confidence 345689999999999987532 222 2 255688876543
No 292
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.96 E-value=1.5 Score=39.08 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+-+++.||+|+|||.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566889999999999874
No 293
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.61 E-value=1.8 Score=41.52 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.++|+||||+|||.++
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999876
No 294
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=73.58 E-value=6 Score=39.95 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.6
Q ss_pred HHhcCCCEEEEccCCCchHHHH
Q 008443 154 VALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+..++.|+.|+|||...
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHH
Confidence 3347888999999999999875
No 295
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=73.56 E-value=2.8 Score=39.77 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||.++
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999875
No 296
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.48 E-value=3.3 Score=39.15 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=25.4
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCc
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~ 203 (565)
.|.-++|.|++|+|||... ..+...+... .|..++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~-~~ia~~~~~~------~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV-RQQALQWGTA------MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH-HHHHHHHHHT------SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHH------cCCeEEEEeCc
Confidence 5667899999999999865 3233332221 24467777643
No 297
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=73.31 E-value=3 Score=39.67 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
.-+.++|++|+|||... ..+..++.. .++++++..
T Consensus 101 ~vi~lvG~nGsGKTTll--~~Lag~l~~------~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL--GKLAHRLKN------EGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHHH------TTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHH--HHHHHHHHH------cCCeEEEEe
Confidence 34789999999999863 344444432 245566654
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.19 E-value=1.5 Score=37.35 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|++|+|||.++
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999875
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.15 E-value=1.5 Score=37.94 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.++.+++.|++|+|||.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4567999999999999875
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.80 E-value=1.6 Score=37.47 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+.-+++.|++|+|||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 301
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=72.72 E-value=0.73 Score=43.91 Aligned_cols=9 Identities=33% Similarity=0.209 Sum_probs=5.7
Q ss_pred CEEEEccCC
Q 008443 160 DLLGCAETG 168 (565)
Q Consensus 160 ~~lv~a~TG 168 (565)
++-+.|.||
T Consensus 128 ~i~i~getg 136 (319)
T 1lsh_B 128 RAMLEASTG 136 (319)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEee
Confidence 356666666
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.71 E-value=1.7 Score=38.61 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.8
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..++-++++|++|+|||.+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35667899999999999875
No 303
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=72.67 E-value=1.7 Score=41.96 Aligned_cols=19 Identities=42% Similarity=0.754 Sum_probs=16.9
Q ss_pred hcCCCEEEEccCCCchHHH
Q 008443 156 LSGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~ 174 (565)
..|..+++.|+||+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788899999999999985
No 304
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.60 E-value=2.1 Score=42.25 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.4
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
++|.||||+|||.++ ..+...
T Consensus 5 i~i~GptgsGKttla-~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS-IQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHHH-HHHHHH
T ss_pred EEEECcchhhHHHHH-HHHHHH
Confidence 678999999999876 444444
No 305
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.54 E-value=3.3 Score=41.81 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=32.7
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-++|.|++|+|||..+ +.+...+..+ |..++|+.-.. -..|+..++..
T Consensus 196 ~G~liiIaG~pG~GKTtla-l~ia~~~a~~-------g~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHH-HHHHHHHHHT-------TCEEEEECSSS-CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHc-------CCEEEEEECCC-CHHHHHHHHHH
Confidence 3445899999999999876 5555554442 56788887643 33444444443
No 306
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.50 E-value=2.1 Score=41.41 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=16.5
Q ss_pred CEEEEccCCCchHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
-++|+||||+|||.++ ..+...
T Consensus 9 lI~I~GptgSGKTtla-~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS-IEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHH
T ss_pred eEEEECCCcCcHHHHH-HHHHHH
Confidence 4789999999999876 444433
No 307
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=72.49 E-value=1.3 Score=38.77 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=16.5
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..|.-+++.|+.|+|||.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999864
No 308
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=72.24 E-value=3.3 Score=47.59 Aligned_cols=56 Identities=5% Similarity=-0.038 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcch-hhHHHHHHHHHHCCCceEEecC
Q 008443 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK-TRCDEVSEALVAEGLHAVALHG 406 (565)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~-~~a~~l~~~l~~~~~~~~~~~~ 406 (565)
+.......+...+....... ..+..-+.|.|.+. ..+..+.+.|.+.|+++....+
T Consensus 319 ~~~~Ea~~ia~~I~~l~~~~---g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 319 NRRAELEGIAREIHALVREK---GYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp SHHHHHHHHHHHHHHHHHTS---CCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred ChHHHHHHHHHHHHHHHHhc---CCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 33444555555555543311 11222377888886 4788999999999998776544
No 309
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=72.22 E-value=1.8 Score=42.68 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
..++++.||+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999875
No 310
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=71.74 E-value=3.6 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=21.5
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
-++++|++|+|||.... .+...+.. .+.+++++.
T Consensus 106 vi~ivG~~GsGKTTl~~--~LA~~l~~------~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG--KLAKMFVD------EGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHH--HHHHHHHH------TTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHH--HHHHHHHh------cCCEEEEEc
Confidence 37789999999998752 23333332 255666654
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=71.31 E-value=1.9 Score=37.50 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.|++|+|||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556899999999999875
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.19 E-value=1.9 Score=38.14 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+.+.|++|+|||.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999864
No 313
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.06 E-value=2 Score=37.96 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+-++++||+|+|||.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677899999999999864
No 314
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=70.99 E-value=17 Score=36.40 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=51.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccccC-CCccCc
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-LDVMGV 443 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idip~v 443 (565)
..++||.+++++-|..+.+.+.+. ++.+..++|+.+.......+ ....+|+|+|. .+.++ +++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 457999999999999998888764 56788889998766544333 23578999994 33333 466777
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 77764
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=70.84 E-value=2.2 Score=37.33 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
|-++|+||.|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 55899999999999864
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=70.79 E-value=4 Score=37.12 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.8
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..|.-+.+.||+|+|||...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHH
Confidence 35677899999999999865
No 317
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.76 E-value=4.7 Score=41.02 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
..++|+.||+|+|||.++
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 346999999999999875
No 318
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.37 E-value=6.3 Score=35.13 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc------cccCCCccCc
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV------ASRGLDVMGV 443 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~~Gidip~v 443 (565)
..++||.++++.-+..+.+.+... ++.+..++|+.+..+.... +. ..+|+|+|.- ....+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 346999999999998888877764 6778888888765443322 22 2789999952 1234555666
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66654
No 319
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.17 E-value=20 Score=34.34 Aligned_cols=74 Identities=15% Similarity=0.281 Sum_probs=52.4
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
.+.++||.++++.-+..+.+.++.. +..+..++|+....+....+ .+..+|+|+|. .+. . .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~----~-Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMS----R-GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THH----H-HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhh----c-CCCcc
Confidence 3667999999999999888887764 46788888887765544332 35788999993 222 1 25666
Q ss_pred CceEEEecc
Q 008443 269 RVSFVILDE 277 (565)
Q Consensus 269 ~~~~iIiDE 277 (565)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 788887643
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.16 E-value=4.5 Score=35.01 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445889999999999875
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=69.95 E-value=2.3 Score=36.28 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999874
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.93 E-value=2.7 Score=36.22 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=18.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
-.+|+|++|+|||.+ +.++..++.
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHTT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHHc
Confidence 468999999999986 556665543
No 323
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=69.74 E-value=2.4 Score=38.14 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHH
Q 008443 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~ 174 (565)
.|+-+.++||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999986
No 324
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.63 E-value=1.9 Score=42.11 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999875
No 325
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=69.59 E-value=3.9 Score=39.87 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=22.3
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
-+.++|++|+|||... ..+..++.. .++++++..
T Consensus 159 vi~lvG~nGsGKTTll--~~Lag~l~~------~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL--GKLAHRLKN------EGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHH--HHHHHHHHH------TTCCEEEEC
T ss_pred EEEEEcCCCChHHHHH--HHHHhhccc------cCCEEEEec
Confidence 3789999999999864 344444432 245566654
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=69.58 E-value=5.6 Score=34.02 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=16.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+.+.|+.|+|||... ..++..+..
T Consensus 7 i~i~G~sGsGKTTl~-~~L~~~l~~ 30 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLM-EKWVAAAVR 30 (169)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHhhHh
Confidence 678999999999864 444444433
No 327
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=69.54 E-value=2.2 Score=37.64 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+.+.||+|+|||.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5666889999999999864
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=69.42 E-value=6.6 Score=33.88 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=13.6
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.++
T Consensus 4 I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 4 GIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999875
No 329
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.34 E-value=4.3 Score=38.90 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=21.7
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
-+++.|++|+|||.+.. .+...+.. .+.+++++.
T Consensus 107 vI~ivG~~G~GKTT~~~--~LA~~l~~------~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA--KMANYYAE------LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHH--HHHHHHHH------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHH--HHHHHHHH------CCCeEEEEe
Confidence 37789999999998752 22333332 256677664
No 330
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=69.05 E-value=4.3 Score=38.89 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHHHhc-----CCCEEEEccCCCchHHHHHHHHHHHH-Hhc---CC-CCCCCC----CeEEEEcCchhh-HHHHHHHHH
Q 008443 151 AMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHC-VAQ---TP-VGRGDG----PLALVLAPTREL-AQQIEKEVK 215 (565)
Q Consensus 151 al~~l~~-----~~~~lv~a~TGsGKT~~~~l~~~~~~-~~~---~~-~~~~~~----~~~Lil~P~~~L-~~Q~~~~~~ 215 (565)
.|+.++. |.-+++.|++|+|||..+ +.+.... +.. .. ..-..| .+++|+.-...+ ..++.+.++
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la-~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM-HQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH-HHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH-HHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4555553 345899999999999876 3333322 110 00 000112 578888866543 445554444
Q ss_pred H
Q 008443 216 A 216 (565)
Q Consensus 216 ~ 216 (565)
.
T Consensus 165 ~ 165 (322)
T 2i1q_A 165 H 165 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 331
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.87 E-value=13 Score=36.43 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... +..+..++|+....+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc-cCCCccC
Confidence 568999999999999888888765 46678888887766554333 36789999993 222 3467778
Q ss_pred ceEEEec
Q 008443 270 VSFVILD 276 (565)
Q Consensus 270 ~~~iIiD 276 (565)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998843
No 332
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.28 E-value=2.6 Score=36.71 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=16.7
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
+-+.+.||+|+|||.+ +.++..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4478999999999986 3444433
No 333
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=68.11 E-value=3.4 Score=36.59 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.+|+|++|+|||.+ +.++..++.
T Consensus 26 ~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 26 NLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHH
T ss_pred EEEEcCCCCCHHHH--HHHHHHHhc
Confidence 68999999999986 566666665
No 334
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.07 E-value=3 Score=40.94 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.++.|+||+|||.+ +.++..++
T Consensus 28 ~vi~G~NGaGKT~i--leAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSSI--FEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 68999999999986 66776633
No 335
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=67.84 E-value=2.2 Score=39.20 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.1
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||..+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999864
No 336
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=67.72 E-value=2.4 Score=36.42 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.++
T Consensus 5 I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEecCCCCCHHHHH
Confidence 689999999999875
No 337
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=67.72 E-value=44 Score=35.50 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=56.9
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
.+.++||.++++.-+..+.+.++.. ++.+..++|+....+....+ .+..+|+|||- .+ ...+.+.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccC
Confidence 3678999999999998888777764 46677788877655544332 36789999993 22 2346777
Q ss_pred CceEEEecchhhh
Q 008443 269 RVSFVILDEADRM 281 (565)
Q Consensus 269 ~~~~iIiDE~H~~ 281 (565)
++++||+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 8999999888753
No 338
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.57 E-value=7.1 Score=40.01 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=18.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
+.+++|.|+||||||.+. -.++..++
T Consensus 167 ~pHlLIaG~TGSGKSt~L-~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV-NAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999874 33443333
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=67.39 E-value=2.4 Score=36.05 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999875
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.30 E-value=4.4 Score=47.81 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~ 210 (565)
|+-+.+.||.|||||.++ +.++....+ .|..++|+.+..+|-...
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~-------~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEecCCCCCHHH
Confidence 356899999999999987 566655554 378899999988887654
No 341
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.25 E-value=2.2 Score=36.61 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+.++|+.|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556889999999999864
No 342
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.15 E-value=4.3 Score=40.77 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=23.4
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
.++++|++|+|||.++ ..+...+..+ |.+++++.
T Consensus 101 vI~ivG~~GvGKTTla-~~La~~l~~~-------G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA-AKLARYIQKR-------GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHH-HHHHHHHHHH-------HCCEEEEC
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEe
Confidence 5889999999999876 3343433332 56677775
No 343
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=67.13 E-value=2.5 Score=46.01 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCCCCcccCCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 118 APIESFTDMCLHPSIMKDIEFHE-YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
.|...|++++.-.+..+.|...- +...+|.+-.-+ .+...+.+|+.||.|+|||+++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 34567888877777777765431 111111110000 0112346999999999999865
No 344
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.05 E-value=67 Score=35.27 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=17.8
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHH
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
++++++||+|+|||.++ -.+...+
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHH
Confidence 46999999999999875 3344443
No 345
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=67.03 E-value=9.2 Score=38.36 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+++|+.||+|+|||.++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 357999999999999875
No 346
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.99 E-value=1.7 Score=42.21 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
..++|+.||+|+|||.++
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 446999999999999875
No 347
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=66.89 E-value=2.9 Score=44.03 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
++|+.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 7999999999999764
No 348
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=66.85 E-value=9.9 Score=43.04 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC----CC----ceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-ccccCC-CccCcc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGL-DVMGVA 444 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gi-dip~v~ 444 (565)
.++||.++++.-|..+.+.+... ++ .+..++|+.+..++....+.+.+ .+|+|+|+ .+..-+ ++.+++
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~ 177 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFD 177 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCS
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCC
Confidence 36999999999998888877653 56 78999999999888888888877 89999995 221111 145677
Q ss_pred EEEE
Q 008443 445 HVVN 448 (565)
Q Consensus 445 ~Vi~ 448 (565)
+||.
T Consensus 178 ~lVi 181 (1054)
T 1gku_B 178 FIFV 181 (1054)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 349
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.32 E-value=2.8 Score=36.95 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+++.|+.|+|||.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999874
No 350
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.15 E-value=33 Score=33.21 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=55.1
Q ss_pred CCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCC
Q 008443 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (565)
Q Consensus 193 ~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~ 268 (565)
.+.++||.++++.-+..+.+.++.. +..+..++|+....+....+ .+..+|+|+|. .+ ...+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcc
Confidence 3568999999999998888887764 46678888887765544333 35788999993 22 2346777
Q ss_pred CceEEEecchh
Q 008443 269 RVSFVILDEAD 279 (565)
Q Consensus 269 ~~~~iIiDE~H 279 (565)
++++||.-+..
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 89999875544
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=66.12 E-value=2.7 Score=36.39 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 352
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.94 E-value=7.9 Score=39.72 Aligned_cols=52 Identities=6% Similarity=0.012 Sum_probs=33.2
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
.|.-++|.|++|+|||..+ +.++..+..+ .+..++|+.-... ..|+..++..
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~~------~g~~vl~~s~E~s-~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGTA------MGKKVGLAMLEES-VEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTTT------SCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHHh------cCCcEEEEeccCC-HHHHHHHHHH
Confidence 4455899999999999875 4454444331 2556888876433 4455555543
No 353
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=65.77 E-value=3.8 Score=39.89 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.7
Q ss_pred cCCC--EEEEccCCCchHHHH
Q 008443 157 SGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~--~lv~a~TGsGKT~~~ 175 (565)
.|.+ ++..|.||||||+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 688999999999874
No 354
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.61 E-value=2.6 Score=42.65 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
.+.+|+.||+|+|||.++
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999875
No 355
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.56 E-value=5.1 Score=40.73 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
-+.++|++|+|||... ..+..++.. .++++++.
T Consensus 295 VI~LVGpNGSGKTTLl--~~LAgll~~------~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI--GKLARQFEQ------QGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHHHH------TTCCEEEE
T ss_pred EEEEECCCcccHHHHH--HHHHHHhhh------cCCeEEEe
Confidence 3789999999999863 344444442 25567776
No 356
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.54 E-value=2.9 Score=37.06 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHhcCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.+..|+-+.+.||.|+|||.. +.++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 455777889999999999986 44444443
No 357
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.47 E-value=35 Score=33.20 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.++.. +..+..++|+....+....+ .+..+|+|+|. .+ ...+++.+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 568999999999999888888775 46677888887765544333 35789999993 22 22466778
Q ss_pred ceEEEec
Q 008443 270 VSFVILD 276 (565)
Q Consensus 270 ~~~iIiD 276 (565)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=65.39 E-value=2.5 Score=36.22 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||.++
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 455889999999999874
No 359
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=65.23 E-value=28 Score=34.78 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHC-CC---ceEEecCCCChhhHHHHHHhhhcC
Q 008443 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GL---HAVALHGGRNQSDRESALRDFRNG 423 (565)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g 423 (565)
...+|....+..+..... ....++||.|+++.-+....+.+.+. +. .+..++|+....++.....
T Consensus 32 tG~GKT~~~~~~~~~~~~------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 100 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLT------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA----- 100 (494)
T ss_dssp TTSCHHHHHHHHHHHHHH------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHh------cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----
Confidence 344565544444444332 12336999999999999888888875 55 8999999988776654433
Q ss_pred CeeEEEecc-cc-----ccCCCccCccEEEEcC
Q 008443 424 STNILVATD-VA-----SRGLDVMGVAHVVNLD 450 (565)
Q Consensus 424 ~~~vLv~T~-~~-----~~Gidip~v~~Vi~~~ 450 (565)
..+|+|+|. .+ ...+...++++||.-.
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 356999994 22 2245667778777533
No 360
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=65.16 E-value=7.5 Score=40.27 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=19.1
Q ss_pred CCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 159 RDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
-++||.|.||||||.+. -.++..++.
T Consensus 215 pHlLIaG~TGSGKS~~L-~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV-NAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHH-HHHHHHHHH
Confidence 46899999999999875 444444443
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=65.07 E-value=3.9 Score=40.08 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.5
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
-.+|+||+|+|||.+ +.++..++
T Consensus 25 ~~~i~G~NGaGKTTl--l~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL--FEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHh
Confidence 468999999999976 45555544
No 362
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=64.75 E-value=4.7 Score=36.06 Aligned_cols=19 Identities=32% Similarity=0.128 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556899999999999864
No 363
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.50 E-value=3.2 Score=37.36 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..|+-+.|.||.|+|||...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35667899999999999863
No 364
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=63.62 E-value=26 Score=30.51 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCeEEEEEcchhhHHH-HHHHHHH---CCCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc
Q 008443 374 FPLTIVFVERKTRCDE-VSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~-l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 432 (565)
..++||.|+++.-++. +.+.+.. .++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 4469999999988777 5555544 3678888888765443322221 1467899884
No 365
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=63.53 E-value=10 Score=38.06 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=41.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEEC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 252 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T 252 (565)
+.++||.+|++.-+..+++.+++. +..+..++|+...........+..+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 457999999999999888888765 467888888755444444456789999999
No 366
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=63.37 E-value=3.1 Score=38.94 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.1
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||..+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 4899999999999864
No 367
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.34 E-value=4.6 Score=35.64 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
.++.|+.|||||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 689999999999875
No 368
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=63.29 E-value=7.2 Score=37.73 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=31.2
Q ss_pred HHHHHhc-----CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 151 AMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 151 al~~l~~-----~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
.|+.++. |.-+++.|++|+|||..+ +.++...... ....+.+..++|+.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~-~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLP-GAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSC-BTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcc-cccCCCCCeEEEEECCCC
Confidence 4566654 334799999999999875 3333332211 001113567888886654
No 369
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.15 E-value=4.7 Score=36.64 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=47.2
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----cccc---CCCcc
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR---GLDVM 441 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~---Gidip 441 (565)
..++||.++++.-+..+.+.+.+. ++.+..++++.....+ ......+..+|+|+|. .+.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 346999999999999998888775 5666666654322111 1222356778999994 2222 36667
Q ss_pred CccEEEEc
Q 008443 442 GVAHVVNL 449 (565)
Q Consensus 442 ~v~~Vi~~ 449 (565)
++++||.-
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 77776653
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.03 E-value=2.5 Score=36.60 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
|..+++.|+.|||||.++
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445889999999999875
No 371
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=62.81 E-value=7 Score=34.76 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=45.9
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC--------CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----cccc-CCCc
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDV 440 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidi 440 (565)
.++||.++++.-+..+.+.+.+. ++.+..++|+.+..+. .+.+ .+..+|+|+|. .+.. .+++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~ 148 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQALDV 148 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCCCG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCCCc
Confidence 46999999999998888877654 5677888888653322 1222 24578999994 2222 3455
Q ss_pred cCccEEEE
Q 008443 441 MGVAHVVN 448 (565)
Q Consensus 441 p~v~~Vi~ 448 (565)
..+++||.
T Consensus 149 ~~~~~lVi 156 (219)
T 1q0u_A 149 HTAHILVV 156 (219)
T ss_dssp GGCCEEEE
T ss_pred CcceEEEE
Confidence 66666554
No 372
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=62.73 E-value=26 Score=37.22 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=55.0
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|||- .+ ...+.+.+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 678999999999998888777764 46677788877655544332 35789999992 22 23466778
Q ss_pred ceEEEecchhh
Q 008443 270 VSFVILDEADR 280 (565)
Q Consensus 270 ~~~iIiDE~H~ 280 (565)
+++||+=+++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99999877764
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=62.65 E-value=3.3 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.-+++.|+.|+|||.++
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999875
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.50 E-value=4.1 Score=37.48 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+.+++.|++|+|||.+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3889999999999999874
No 375
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=62.23 E-value=3.5 Score=39.78 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999864
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=61.87 E-value=4.3 Score=35.31 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.|+.|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999875
No 377
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=61.84 E-value=4.7 Score=35.69 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
|.-+.|.|++|+|||.. +.++..++.
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHh
Confidence 44578999999999976 344444443
No 378
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.73 E-value=3.5 Score=35.80 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.-+++.|+.|+|||.++
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999875
No 379
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=61.49 E-value=9.2 Score=38.47 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=45.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
+.++||.+|+++-+..+++.++.. ++.+..++|............+..+|+|+|. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESS-----STTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe-eeccC-ceEE
Confidence 567999999999999888888764 4678888886655544444567899999993 3322 34566 7777
Q ss_pred E
Q 008443 274 I 274 (565)
Q Consensus 274 I 274 (565)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 380
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.45 E-value=11 Score=41.11 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+|+.||||+|||.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999875
No 381
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.43 E-value=3.6 Score=35.68 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
-+++.|++|+|||.+.
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3678999999999864
No 382
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=61.43 E-value=3.3 Score=36.49 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|.-+.+.|+.|+|||.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999874
No 383
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.29 E-value=4.1 Score=34.86 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.4
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|+|||.++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999875
No 384
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=61.01 E-value=3.5 Score=38.88 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.1
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
-++++|+.|+|||.++
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999875
No 385
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=60.37 E-value=3.9 Score=35.51 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+++.|++|||||.++
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999875
No 386
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=60.37 E-value=11 Score=40.12 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=47.1
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
+.++||.+|+++-+..+++.++.. ++.+..++|............+..+|||+| +.+..+ +++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e~G-IDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISEMG-ANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGGTT-CCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhhcc-eeeC-CcEE
Confidence 567999999999998887777654 567888888644333333335678999999 333333 4455 6666
Q ss_pred E
Q 008443 274 I 274 (565)
Q Consensus 274 I 274 (565)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.34 E-value=4.2 Score=35.47 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+.-+++.|++|+|||.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556899999999999875
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=60.31 E-value=2.1 Score=38.73 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=12.6
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..|.-+.+.||+|+|||.+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999864
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.29 E-value=5.7 Score=41.91 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHhcCCCEEEEccCCCchHHHH
Q 008443 154 VALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 154 ~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+..+++.||+|+|||.++
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3457789999999999999874
No 390
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=60.18 E-value=5.4 Score=43.05 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=20.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchHHHH
Q 008443 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (565)
Q Consensus 151 al~~l~~~~~--~lv~a~TGsGKT~~~ 175 (565)
.+..+++|.+ ++..|.||||||++.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667778887 677899999999863
No 391
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=60.14 E-value=5.4 Score=37.84 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.6
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
.|+.+.|+||+|+|||.. +.++..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 677789999999999976 44444444
No 392
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=60.13 E-value=9.3 Score=35.19 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
-++++|+.|+|||.++
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4789999999999875
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.09 E-value=4.6 Score=34.78 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+++.|+.|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34889999999999875
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=59.90 E-value=4.8 Score=35.73 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCchHHHH
Q 008443 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 145 ~~~Q~~al~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
++.++..+ .+..+.-+++.|+.|+|||.++
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444442 3345667889999999999875
No 395
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=59.84 E-value=1.9 Score=41.10 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 008443 3 YEPPHRRTSSS 13 (565)
Q Consensus 3 ~~~~~~~~~~~ 13 (565)
|+|....+.|.
T Consensus 2 ~~~~~~~~~~~ 12 (319)
T 1lsh_B 2 YVPQRKPQTSR 12 (319)
T ss_dssp -----------
T ss_pred CCcccCCcccc
Confidence 66665555443
No 396
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=59.78 E-value=8.4 Score=36.38 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=21.4
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
-+++.|++|+|||.+.. .+...+.. .+.+++++.
T Consensus 100 vi~i~G~~G~GKTT~~~-~la~~~~~-------~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG-KLAYFYKK-------KGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHH-HHHHHHHH-------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEe
Confidence 36778999999998753 23333322 255676665
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.56 E-value=7.5 Score=33.91 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCCceEEEecchhhh--hhCCCHHHHHHHHHhCCCCCeEEEEeccc
Q 008443 267 LSRVSFVILDEADRM--LDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (565)
Q Consensus 267 ~~~~~~iIiDE~H~~--~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 310 (565)
..+.+++|+||+..+ .+..+...+.+++... ..+|+.+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 566889999997655 3333555566666543 2356556664
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=59.49 E-value=4.1 Score=34.50 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+++++.|..|||||.++
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999986
No 399
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=59.46 E-value=3.7 Score=41.75 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
+.+++.||+|+|||.++
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999875
No 400
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.45 E-value=30 Score=33.85 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=52.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
..++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCccc
Confidence 457999999999998888877764 46678888887765544333 46789999993 22 23467778
Q ss_pred ceEEEecc
Q 008443 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-.
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88888633
No 401
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.37 E-value=12 Score=38.47 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccccC-C-CccC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-L-DVMG 442 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-i-dip~ 442 (565)
..++||.|+++.-+..+.+.+... ++.+..++|+.+...+...+. +..+|+|+|. .+..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 457999999998887777776654 899999999987655433322 1367999994 22333 3 5667
Q ss_pred ccEEEEcC
Q 008443 443 VAHVVNLD 450 (565)
Q Consensus 443 v~~Vi~~~ 450 (565)
+++||.-.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 78777633
No 402
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=59.31 E-value=19 Score=39.13 Aligned_cols=76 Identities=9% Similarity=0.148 Sum_probs=54.3
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHh------cCCCceEEEEECCCcHHHHHHHHh---------CCCeEEEECchHHHH
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSR------SLDSFKTAIVVGGTNIAEQRSELR---------GGVSIVVATPGRFLD 258 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~Ilv~T~~~l~~ 258 (565)
+.++||.+|++.-+.++.+.+...+. ...++.+..++|+....++...+. +...|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 56899999999999999888876432 124678888999988776654442 3568999993
Q ss_pred HHHcCCCCCCCceEEEe
Q 008443 259 HLQQGNTSLSRVSFVIL 275 (565)
Q Consensus 259 ~~~~~~~~~~~~~~iIi 275 (565)
.+.. .+.+.++++||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3322 356778887763
No 403
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=59.21 E-value=9.8 Score=33.37 Aligned_cols=16 Identities=31% Similarity=-0.022 Sum_probs=13.8
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
-+.+.|+.|+|||.++
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 404
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=59.14 E-value=10 Score=34.91 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=32.0
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~ 217 (565)
.|..+|+.+.+|+||| ++.+.++..-.+ +|.+++|++-. +=..++.+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~-------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK-------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH-------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH-------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 3445788878888888 444555555444 37778888764 3344555555554
No 405
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.05 E-value=12 Score=40.71 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
..++|+.||+|+|||.++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 347999999999999875
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=59.02 E-value=6.5 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|++|+|||.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999875
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=58.96 E-value=4.5 Score=36.15 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|||||.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446899999999999875
No 408
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=58.73 E-value=64 Score=32.68 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHH----HhCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+...++++.+..-+..+.+.+.+. ...+..++|+....+.... ..+..+|+|+|++.+.. .+++.+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----cccccc
Confidence 344555555555554444444332 2378888888876554332 24678999999877753 367778
Q ss_pred ceEEEecchh
Q 008443 270 VSFVILDEAD 279 (565)
Q Consensus 270 ~~~iIiDE~H 279 (565)
+++||+....
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999988776
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.52 E-value=11 Score=44.38 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=27.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
.++.+++.|++|+|||..+ +.++..... .|.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LA-lqla~~~~~-------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHhh-------CCCceEEEEecC
Confidence 3567999999999999876 444433333 256688887543
No 410
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.49 E-value=1e+02 Score=29.57 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.6
Q ss_pred CEEEEccCCCchHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.+.++|.+|+|||... ..+...+
T Consensus 81 ~I~i~G~~G~GKSTl~-~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI-EALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 4788999999999875 3333333
No 411
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=58.47 E-value=4.4 Score=34.39 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999875
No 412
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=58.35 E-value=4.4 Score=36.05 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=13.6
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|||||.++
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 413
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.33 E-value=6.9 Score=33.76 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=16.0
Q ss_pred CEEEEccCCCchHHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHC 183 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~ 183 (565)
.+.+.||.|+|||.. +.++..+
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHH
Confidence 367899999999986 3444433
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.09 E-value=4.3 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
...+++.|++|+|||.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345899999999999875
No 415
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.05 E-value=2.3 Score=37.63 Aligned_cols=19 Identities=26% Similarity=-0.013 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+.-+.+.|++|+|||.++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445789999999999864
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=57.93 E-value=5.1 Score=35.84 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
...+++.|+.|+|||.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999875
No 417
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=57.91 E-value=4.8 Score=35.26 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.|+.|+|||.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999875
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=57.65 E-value=6.3 Score=34.10 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=24.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHH
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~ 216 (565)
++|.|++|||||..+ ..+ ... +..++|++.....-.++.+++..
T Consensus 2 ilV~Gg~~SGKS~~A-~~l----a~~-------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA-EAL----IGD-------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHH-HHH----HCS-------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHH-HHH----Hhc-------CCCeEEEecCCCCCHHHHHHHHH
Confidence 689999999999754 222 111 33488988865443444444443
No 419
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=57.44 E-value=4.6 Score=34.94 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.1
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 420
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=57.38 E-value=9.8 Score=32.04 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
..|.-+.+.||.|+|||.. +.++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 3556688999999999975 45555544
No 421
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=57.33 E-value=25 Score=34.56 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=21.7
Q ss_pred HHHHHHHHh---cCCCEEEEccCCCchHHHH
Q 008443 148 QAQAMPVAL---SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 148 Q~~al~~l~---~~~~~lv~a~TGsGKT~~~ 175 (565)
=..+++.+. .|+.+++.|++|+|||...
T Consensus 161 GiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 161 TARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 344555544 6889999999999999875
No 422
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.28 E-value=6.5 Score=34.71 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=17.6
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~ 184 (565)
+.-+.+.|++|+|||.+. .++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~--~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA--QALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHHH--HHHHHHh
Confidence 445779999999999863 4444433
No 423
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.18 E-value=4.7 Score=35.86 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999875
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=57.12 E-value=7.9 Score=46.43 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=32.8
Q ss_pred hcCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~ 211 (565)
..++.++++|++|+|||..+ ..++....+ .|.+++|+.- .++..++.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la-~~~~~ea~k-------~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEECT-TSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEEc-cccHHHHH
Confidence 35678999999999999887 444444443 3777999875 44445554
No 425
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=57.10 E-value=4.5 Score=42.06 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.||+|+|||.++
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667999999999999874
No 426
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=56.85 E-value=7.4 Score=33.39 Aligned_cols=19 Identities=21% Similarity=0.164 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|+-+++.|+.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4566999999999999876
No 427
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.73 E-value=4.4 Score=50.23 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=17.4
Q ss_pred hcCCCEEEEccCCCchHHHH
Q 008443 156 LSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 156 ~~~~~~lv~a~TGsGKT~~~ 175 (565)
..++.+|++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 36788999999999999864
No 428
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=56.62 E-value=4.9 Score=35.27 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+++.|+.|+|||.++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999875
No 429
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=56.09 E-value=44 Score=36.38 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=47.4
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccccC-C-CccC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-L-DVMG 442 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-i-dip~ 442 (565)
.+++||.|+++.-+....+.|... ++.+..++|+.+...+...+. +..+|+|+|. .+..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 457999999999888877777665 899999999987655433322 2477999994 22222 3 5667
Q ss_pred ccEEEEc
Q 008443 443 VAHVVNL 449 (565)
Q Consensus 443 v~~Vi~~ 449 (565)
+++||.-
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7888753
No 430
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=55.95 E-value=15 Score=36.93 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=47.2
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHhCCCeEEEECchHHHHHHHcCCCCCCCceEE
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~i 273 (565)
+.++||.+|++.-+.++.+.+++. ++.+..+++............+..+|+|+| +.+..+ +++.+ ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~~G-iDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEMG-ANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGGSS-CCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHHhC-cCCCC-CEE
Confidence 457999999999998888877653 466777877765433333335678999999 333333 45555 666
Q ss_pred E
Q 008443 274 I 274 (565)
Q Consensus 274 I 274 (565)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 431
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.92 E-value=30 Score=33.53 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----cc-ccCCCccCc
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VA-SRGLDVMGV 443 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~v 443 (565)
.+++||.|+++.-+..+.+.+... ++.+..++|+....+....+. ..+|+|+|. .+ ...+++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 347999999999998888877653 678889999887665554443 356999994 12 224455667
Q ss_pred cEEEE
Q 008443 444 AHVVN 448 (565)
Q Consensus 444 ~~Vi~ 448 (565)
++||.
T Consensus 164 ~~vIi 168 (394)
T 1fuu_A 164 KMFIL 168 (394)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77765
No 432
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=55.91 E-value=4.7 Score=34.62 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.|..+++.|+.|+|||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3455789999999999874
No 433
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=55.77 E-value=9.3 Score=29.07 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..+++++|.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 347999999988899999999999998888888763
No 434
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.76 E-value=5.1 Score=35.88 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
..+.+.|++|||||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999875
No 435
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=55.75 E-value=20 Score=34.21 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=17.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+-+.|++|+|||..+ ..+..++.
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHHT
T ss_pred EEEECCCCCCHHHHH--HHHHHHhc
Confidence 678999999999863 45555554
No 436
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=55.73 E-value=9.2 Score=29.67 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..++++||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 346999999988899999999999999899998864
No 437
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=55.70 E-value=93 Score=26.22 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCChhhHHHHHHhhhcCCeeEE
Q 008443 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (565)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 428 (565)
..+....+.+.+.. ...+ ...+-|.|.+..++..+.+.|...|+.+..++.+.. .+ .-.|.
T Consensus 43 ~~~e~~~i~~~I~~-~~~g------~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~ 103 (174)
T 3dmn_A 43 FEAGVDQVVDQLAM-NDSE------RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVI 103 (174)
T ss_dssp HHHHHHHHHHHHHH-HHHT------TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEE
T ss_pred HHHHHHHHHHHHHH-hccC------CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeE
Confidence 34445556666655 2111 224888899999999999999999998877765432 12 23589
Q ss_pred EeccccccCCCccCccEEEEcCCC
Q 008443 429 VATDVASRGLDVMGVAHVVNLDLP 452 (565)
Q Consensus 429 v~T~~~~~Gidip~v~~Vi~~~~~ 452 (565)
|+|--.++|+.+ +.||.+++.
T Consensus 104 v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 104 VVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp EEEGGGCTTCCE---EEEEEETCB
T ss_pred EEEccccCCcCC---CEEEEecCC
Confidence 999999999986 677777754
No 438
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.67 E-value=5.2 Score=35.00 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=13.4
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.+.
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 689999999999875
No 439
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=55.59 E-value=9.5 Score=29.18 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
..++++||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 346999999988899999999999998888888753
No 440
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.53 E-value=14 Score=32.89 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=21.5
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcC
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P 202 (565)
+....+|.|||.++ .-+...+.+ .|.+++++=|
T Consensus 6 v~s~kgGvGKTt~a-~nLa~~la~-------~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVAS-CALLQAAKA-------AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHH-HHHHHHHHH-------TTCCEEEECS
T ss_pred EEECCCCCCHHHHH-HHHHHHHHH-------CCCCEEEEcc
Confidence 34456899999987 444444433 3778888755
No 441
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.53 E-value=4.8 Score=36.58 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
.|.-+.+.||.|+|||.. +.++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL--l~~l~ 52 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM--LNIIG 52 (235)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHT
T ss_pred CCCEEEEECCCCCcHHHH--HHHHh
Confidence 567789999999999975 44443
No 442
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.51 E-value=17 Score=34.24 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=47.6
Q ss_pred CeEEEEEcchhhHHHHHHHHHHC-----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc-----c-c-cCCCccC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----A-S-RGLDVMG 442 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~-~Gidip~ 442 (565)
.++||.++++.-|..+.+.+... ++.+..+.++....... ....+|+|+|.- + . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 46999999999999988887764 45667777765533221 355689999952 2 2 3567778
Q ss_pred ccEEEEcC
Q 008443 443 VAHVVNLD 450 (565)
Q Consensus 443 v~~Vi~~~ 450 (565)
+.+||.-.
T Consensus 236 l~~lVlDE 243 (300)
T 3fmo_B 236 IKVFVLDE 243 (300)
T ss_dssp CSEEEETT
T ss_pred ceEEEEeC
Confidence 88877643
No 443
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=55.46 E-value=5.4 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999875
No 444
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=55.36 E-value=9.8 Score=29.32 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHCCCceEEecCCC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGR 408 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 408 (565)
..+++++|.+-..+...+..|...|+.++.+.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34699999998889999999999999988888775
No 445
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=55.32 E-value=5.3 Score=35.06 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=14.0
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 446
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.24 E-value=14 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.4
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.+.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 447
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=55.15 E-value=7.9 Score=36.99 Aligned_cols=14 Identities=36% Similarity=0.299 Sum_probs=12.7
Q ss_pred EEEEccCCCchHHH
Q 008443 161 LLGCAETGSGKTAA 174 (565)
Q Consensus 161 ~lv~a~TGsGKT~~ 174 (565)
++|.|+.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68999999999975
No 448
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=54.99 E-value=12 Score=35.78 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=22.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+++.+..|.|||.+++- +...+.. .|.++|+|-
T Consensus 17 ~v~sgKGGvGKTTvA~~-LA~~lA~-------~G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAA-TALWMAR-------SGKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHH-------TTCCEEEEE
T ss_pred EEEeCCCCchHHHHHHH-HHHHHHH-------CCCcEEEEe
Confidence 57789999999998743 3333333 367788776
No 449
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=54.98 E-value=40 Score=34.54 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=47.3
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEecc-----ccccC-C-CccC
Q 008443 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-L-DVMG 442 (565)
Q Consensus 374 ~~~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-i-dip~ 442 (565)
..++||.|+++.-+..+.+.+... ++.+..++|+.+...+...+. ...+|+|+|. .+..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 457999999999888887777664 899999999986555433222 1367999994 22333 3 5677
Q ss_pred ccEEEEc
Q 008443 443 VAHVVNL 449 (565)
Q Consensus 443 v~~Vi~~ 449 (565)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887763
No 450
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.71 E-value=5.4 Score=35.04 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.7
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+.+.|+.|+|||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999874
No 451
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=54.52 E-value=5.7 Score=35.03 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+.-+++.|+.|+|||.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3556899999999999875
No 452
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=54.51 E-value=8.6 Score=42.46 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=14.5
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||||+|||.++
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999875
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=54.43 E-value=5.6 Score=35.02 Aligned_cols=15 Identities=33% Similarity=0.228 Sum_probs=13.2
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+.+.|+.|||||.+.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999874
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.33 E-value=8.6 Score=37.30 Aligned_cols=17 Identities=35% Similarity=0.134 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchHHHH
Q 008443 159 RDLLGCAETGSGKTAAF 175 (565)
Q Consensus 159 ~~~lv~a~TGsGKT~~~ 175 (565)
.-+.|.|+.|+|||...
T Consensus 132 ~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLA 148 (349)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999875
No 455
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=54.02 E-value=15 Score=31.37 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=15.8
Q ss_pred CEEEEccCCCchHHHHHHHHHHH
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQH 182 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~ 182 (565)
-+++.|+.|+|||... -.++..
T Consensus 8 ~i~i~G~sGsGKTTl~-~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL-KKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHHh
Confidence 3788999999999764 334443
No 456
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=53.98 E-value=12 Score=33.02 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.8
Q ss_pred EEEEccCCCchHHHHH
Q 008443 161 LLGCAETGSGKTAAFT 176 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~ 176 (565)
+++.||+|+||+..+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998763
No 457
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=53.83 E-value=5.2 Score=35.26 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+.-+++.|+.|||||.++
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445889999999999875
No 458
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=53.58 E-value=14 Score=41.27 Aligned_cols=96 Identities=14% Similarity=0.217 Sum_probs=54.1
Q ss_pred ccCCC-HHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCC-C-CHHHHHHHHHCCCCC--C--CHHHHHHHHHHhc-C-
Q 008443 88 VLRFN-PEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMC-L-HPSIMKDIEFHEYTR--P--TSIQAQAMPVALS-G- 158 (565)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-l-~~~l~~~l~~~~~~~--~--~~~Q~~al~~l~~-~- 158 (565)
...++ +.-+..++.++.....-.-.+ ++--.++.|..++ + +++.++........+ | +.+=..|+..+.. +
T Consensus 65 L~~LnE~svL~nL~~Ry~~~~IYTy~G-~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~ 143 (1052)
T 4anj_A 65 LMYLNEATLLHNIKVRYSKDRIYTYVA-NILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKL 143 (1052)
T ss_dssp SSSCSHHHHHHHHHHHHHTTCCEEEET-TEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHcCCCcEEeEC-CEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 33444 335678888764333211111 2233455566663 3 577777665443333 3 3344556666653 3
Q ss_pred -CCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 159 -RDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 159 -~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
+.+||.|++|+|||... --+++++..
T Consensus 144 nQsIiiSGESGAGKTest-K~im~yLa~ 170 (1052)
T 4anj_A 144 SQSIIVSGESGAGKTENT-KFVLRYLTE 170 (1052)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHH-HHHHHHHHH
Confidence 35999999999999987 445555543
No 459
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=53.38 E-value=4.8 Score=34.54 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=11.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+.-+++.|+.|+|||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 460
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=53.18 E-value=8.3 Score=37.20 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=17.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHh
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
.+++||+|+|||.+ +.++...+.
T Consensus 26 ~~i~G~NGsGKS~l--leAi~~~l~ 48 (339)
T 3qkt_A 26 NLIIGQNGSGKSSL--LDAILVGLY 48 (339)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 68999999999986 555544443
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=53.12 E-value=11 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=26.5
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchh
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~ 205 (565)
.|.-++|.|++|+|||... ..++. .... .|.+++++++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl-~~l~g-~~~~------~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLV-SRFVE-NACA------NKERAILFAYEES 320 (525)
T ss_dssp SSCEEEEEECTTSSHHHHH-HHHHH-HHHT------TTCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHH-HHHh------CCCCEEEEEEeCC
Confidence 5566899999999999864 22322 2221 2556788877543
No 462
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=53.11 E-value=6.3 Score=34.80 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+.-+++.|+.|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556899999999999875
No 463
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=53.08 E-value=5.6 Score=36.21 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHH
Q 008443 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999975
No 464
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=52.67 E-value=6.4 Score=35.08 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|||||.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 465
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.65 E-value=6.2 Score=34.11 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=13.4
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|||||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 466
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=52.59 E-value=6.3 Score=35.22 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
.|.-+.+.||.|+|||.. +.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTL--lk~l~ 56 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL--LKTIS 56 (214)
T ss_dssp TTCCEEEECCTTSSHHHH--HHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHh
Confidence 677789999999999975 44443
No 467
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=52.35 E-value=6.2 Score=34.47 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+.|.|++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 468
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=52.20 E-value=12 Score=27.92 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.5
Q ss_pred CeEEEEEcchhhHHHHHHHHHHCCCceEEecCCCC
Q 008443 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (565)
Q Consensus 375 ~~~lvF~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 409 (565)
.+++++|.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 46999999988899999999999999778888864
No 469
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.19 E-value=6.5 Score=35.87 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
...+++.|+.|+|||.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345899999999999875
No 470
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=52.09 E-value=6.3 Score=35.01 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.9
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 471
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=52.04 E-value=7.5 Score=37.13 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+++.||+|+|||..+
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4455799999999999876
No 472
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=57.08 E-value=3.1 Score=35.57 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH----hCCCeEEEECchHHHHHHHcCCCCCCC
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 269 (565)
+.++||.++++.-+..+.+.++.. ++.+..++|+....+....+ .+..+|+|+| +.+. . .+++.+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~----~-Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAA----R-GIDIPD 98 (170)
Confidence 456899999998888887777664 35566677776544433222 3467899999 2222 1 244556
Q ss_pred ceEEEecc
Q 008443 270 VSFVILDE 277 (565)
Q Consensus 270 ~~~iIiDE 277 (565)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 67776533
No 473
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=51.67 E-value=14 Score=35.69 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=22.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+++.+..|.|||.+++- +...+.. .|.++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~-LA~~lA~-------~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAA-TGVYLAE-------KGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHH-HHHHHHH-------SSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHH-HHHHHHH-------CCCeEEEEe
Confidence 57789999999998743 3333333 367788776
No 474
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.61 E-value=17 Score=45.16 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHH-HH---HHHhcCCCEEEEccCCCchHHHH
Q 008443 130 PSIMKDIEFHEYTRPTSIQAQ-AM---PVALSGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~-al---~~l~~~~~~lv~a~TGsGKT~~~ 175 (565)
..+.+.+.+.++. +.+.+.. ++ +.+.....++++||||+|||.++
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 4455556666654 5555432 22 22334556999999999999985
No 475
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=51.55 E-value=14 Score=35.40 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=22.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+++.+..|.|||.+++.-+ .. +.+ .|.++++|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA-~~-lA~------~G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLA-IQ-MSK------VRSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHH-HH-HHT------SSSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHH-HH-HHH------CCCeEEEEE
Confidence 5778999999998874332 22 222 377788774
No 476
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=51.34 E-value=81 Score=28.97 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=59.0
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHH---
Q 008443 166 ETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL--- 242 (565)
Q Consensus 166 ~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 242 (565)
...+||-.. +..++..+.. .+.++||.+.+...+..+...+.... ++.+..+.|+....+....+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHh
Confidence 456889865 3666666654 26679999999988888777776643 34566788888765543332
Q ss_pred h-C-CCeEEEECchHHHHHHHcCCCCCCCceEEEecch
Q 008443 243 R-G-GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (565)
Q Consensus 243 ~-~-~~~Ilv~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 278 (565)
. + .+.|++.+..... ..+++...+.||+=+.
T Consensus 160 ~~~~~~~v~L~st~~~g-----~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 160 QNNPSVKFIVLSVKAGG-----FGINLTSANRVIHFDR 192 (271)
T ss_dssp HHCTTCCEEEEECCTTC-----CCCCCTTCSEEEECSC
T ss_pred cCCCCCCEEEEehhhhc-----CCcCcccCCEEEEECC
Confidence 2 2 4564444433321 2355666677665333
No 477
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=51.31 E-value=32 Score=32.36 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.2
Q ss_pred eEEEEEcchhhHHHHHHHHHHC----CCceEEecCCCChhhHHHHHHhhhcCCeeEEEeccc-----cc-cCCCccCccE
Q 008443 376 LTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----AS-RGLDVMGVAH 445 (565)
Q Consensus 376 ~~lvF~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~-~Gidip~v~~ 445 (565)
++||.++++.-+..+++.+.+. +..+..++|+.+....... +. ..+|+|+|.- +. ..+++.++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 132 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSFEI 132 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhCcE
Confidence 5999999999999988888753 5788889998876554333 22 3679999941 12 2345667777
Q ss_pred EEE
Q 008443 446 VVN 448 (565)
Q Consensus 446 Vi~ 448 (565)
||.
T Consensus 133 iVi 135 (337)
T 2z0m_A 133 VII 135 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=51.20 E-value=10 Score=33.89 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHHH
Q 008443 158 GRDLLGCAETGSGKTAAFT 176 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~ 176 (565)
.+-+++.||+|+||+..+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3447889999999998763
No 479
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=51.16 E-value=15 Score=36.25 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=25.5
Q ss_pred CCCEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCch
Q 008443 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~P~~ 204 (565)
|.-++|.|+.|+|||.... .++..... ++...+.+..++|+.-..
T Consensus 178 Gei~~I~G~sGsGKTTLl~-~la~~~~~-p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH-TLAVTCQI-PLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHTTS-CGGGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHH-HHHHHhcc-CcccCCCCCcEEEEeCCC
Confidence 3458999999999998653 22212111 110111345688887554
No 480
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.04 E-value=6.7 Score=35.76 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchHHHH
Q 008443 158 GRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 158 ~~~~lv~a~TGsGKT~~~ 175 (565)
+..+++.|+.|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 481
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.94 E-value=6.3 Score=40.35 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.3
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.||+|+|||..+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999874
No 482
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=50.69 E-value=7.2 Score=35.80 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAF 175 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~ 175 (565)
.+..+.|.|++|+|||.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556889999999999874
No 483
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.53 E-value=6.9 Score=33.52 Aligned_cols=16 Identities=31% Similarity=0.221 Sum_probs=13.4
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+.|+|++|+|||.+.
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
No 484
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=50.37 E-value=7 Score=35.02 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHH
Q 008443 161 LLGCAETGSGKTAAF 175 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~ 175 (565)
+++.|+.|+|||.++
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999875
No 485
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=50.17 E-value=6.4 Score=36.05 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
.|.-+.+.||.|+|||.. +.++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL--l~~l~ 56 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL--TKLIQ 56 (247)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHh
Confidence 577789999999999985 44443
No 486
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=50.15 E-value=6.3 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchHHH
Q 008443 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566789999999999975
No 487
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=50.02 E-value=15 Score=38.52 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=23.1
Q ss_pred CEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
-+++.|..|.|||.+++.-+ ..+.+ .|.++|+|-
T Consensus 10 i~~~sgkGGvGKTT~a~~lA-~~lA~-------~G~rVLlvd 43 (589)
T 1ihu_A 10 YLFFTGKGGVGKTSISCATA-IRLAE-------QGKRVLLVS 43 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH-------TTCCEEEEE
T ss_pred EEEEeCCCcCHHHHHHHHHH-HHHHH-------CCCcEEEEE
Confidence 47789999999999874433 33333 266777765
No 488
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.96 E-value=6.6 Score=36.29 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHH
Q 008443 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~ 174 (565)
.|.-+.+.||.|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677789999999999975
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=49.91 E-value=6.6 Score=35.49 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
.|.-+.+.||.|+|||.. +.++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL--l~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL--LMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHh
Confidence 577789999999999975 44443
No 490
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=49.88 E-value=15 Score=32.87 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+..+..|.|||.+++ .+...+.+ .|.++++|=
T Consensus 7 v~s~kgGvGKTt~a~-~LA~~la~-------~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTA-NLSVALGD-------RGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHH-HHHHHHHH-------TTCCEEEEE
T ss_pred EecCCCCCCHHHHHH-HHHHHHHh-------cCCeEEEEe
Confidence 445678999998873 33333333 366788775
No 491
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.78 E-value=5.3 Score=36.71 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=14.2
Q ss_pred CEEEEccCCCchHHHH
Q 008443 160 DLLGCAETGSGKTAAF 175 (565)
Q Consensus 160 ~~lv~a~TGsGKT~~~ 175 (565)
.+++.|++|+|||.++
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999875
No 492
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=49.70 E-value=17 Score=33.17 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=21.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
.+..+..|.|||.++ ..+...+.. .|.++++|=
T Consensus 6 ~v~s~kgGvGKTt~a-~~LA~~la~-------~g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTIT-ANLGVALAQ-------LGHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHH-HHHHHHHHH-------TTCCEEEEE
T ss_pred EEECCCCCCCHHHHH-HHHHHHHHh-------CCCcEEEEE
Confidence 355778899999987 333333333 366788774
No 493
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=49.62 E-value=6.6 Score=35.34 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.6
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
.|.-+.+.||.|+|||.. +.++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL--l~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL--LYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHH--HHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHh
Confidence 566788999999999975 44443
No 494
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=49.33 E-value=38 Score=36.73 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=48.4
Q ss_pred CCeEEEEcCchhhHHHHHHHHHHHHhcCCCceEEEEECCCcHHHHHHHHh--CCCeEEEECchHHHHHHHcCCCCCC---
Q 008443 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR--GGVSIVVATPGRFLDHLQQGNTSLS--- 268 (565)
Q Consensus 194 ~~~~Lil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~Ilv~T~~~l~~~~~~~~~~~~--- 268 (565)
+..+||.+.+++-+..+.+.+++. ++.+..++|+....+...... ....|+|+| +..-++ ++..
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIAT-----dmAgRG-~DI~l~~ 500 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT-----NMAGRG-TDIKLGE 500 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE-----TTSSTT-CCCCCCT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeC-----CccccC-cCccccc
Confidence 445999999999888777766553 677888888865444432221 246799999 333333 2222
Q ss_pred -----CceEEEecchhh
Q 008443 269 -----RVSFVILDEADR 280 (565)
Q Consensus 269 -----~~~~iIiDE~H~ 280 (565)
...+||-=|.|.
T Consensus 501 ~V~~~ggl~VIn~d~p~ 517 (844)
T 1tf5_A 501 GVKELGGLAVVGTERHE 517 (844)
T ss_dssp TSGGGTSEEEEESSCCS
T ss_pred hhhhcCCcEEEEecCCC
Confidence 345777777774
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=48.94 E-value=5.5 Score=37.83 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchHHH
Q 008443 157 SGRDLLGCAETGSGKTAA 174 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~ 174 (565)
.|..+.|+||+|+|||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 567789999999999985
No 496
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=48.93 E-value=16 Score=33.31 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=21.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 161 ~lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+++.+..|+|||... ..+...+. . +.+++++-
T Consensus 17 ~~~~GkgGvGKTTl~-~~La~~l~-~-------g~~v~vvd 48 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLT-GEFGRYLE-D-------NYKVAYVN 48 (262)
T ss_dssp EEEECSTTSSHHHHH-HHHHHHHT-T-------TSCEEEEE
T ss_pred EEEeCCCCCCHHHHH-HHHHHHHH-C-------CCeEEEEe
Confidence 788999999999875 33433332 2 55676665
No 497
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.91 E-value=25 Score=44.36 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH----hcCCCEEEEccCCCchHHHHHHHHHHHHHh
Q 008443 130 PSIMKDIEFHEYTRPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (565)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~al~~l----~~~~~~lv~a~TGsGKT~~~~l~~~~~~~~ 185 (565)
..+.+.+.+.|+ .+.+.|..=+-.+ .....++++||||+|||.++ .++...+.
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~--~~L~~al~ 931 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW--EVYLEAIE 931 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH--HHHHHHHT
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH--HHHHHHHH
Confidence 455566667776 4555543332222 23345899999999999985 34555544
No 498
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=48.78 E-value=33 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=19.2
Q ss_pred EEEEc-cCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 008443 161 LLGCA-ETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (565)
Q Consensus 161 ~lv~a-~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil 200 (565)
+++.+ ..|.|||.+++- +...+.. .|.++|+|
T Consensus 85 I~vts~kgG~GKTt~a~n-LA~~lA~-------~G~rVLLI 117 (271)
T 3bfv_A 85 IVITSEAPGAGKSTIAAN-LAVAYAQ-------AGYKTLIV 117 (271)
T ss_dssp EEEECSSTTSSHHHHHHH-HHHHHHH-------TTCCEEEE
T ss_pred EEEECCCCCCcHHHHHHH-HHHHHHh-------CCCeEEEE
Confidence 44544 479999988643 3333322 36778776
No 499
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=48.78 E-value=16 Score=33.54 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=20.4
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 008443 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (565)
Q Consensus 162 lv~a~TGsGKT~~~~l~~~~~~~~~~~~~~~~~~~~Lil~ 201 (565)
+..+..|.|||.+++ -+...+.. .|.++|+|=
T Consensus 23 v~s~kGGvGKTT~a~-nLA~~la~-------~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTA-LLAVHYAR-------QGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHH-HHHHHHHH-------TTCCEEEEE
T ss_pred EEcCCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEe
Confidence 456788999998873 33333333 366787764
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=48.58 E-value=7 Score=36.26 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCCchHHHHHHHHHH
Q 008443 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (565)
Q Consensus 157 ~~~~~lv~a~TGsGKT~~~~l~~~~ 181 (565)
.|.-+.+.||.|+|||.. +.++.
T Consensus 36 ~Ge~~~liG~nGsGKSTL--l~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL--LRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHHH--HHHHT
T ss_pred CCCEEEEECCCCCcHHHH--HHHHh
Confidence 567788999999999985 44443
Done!