Query 008446
Match_columns 565
No_of_seqs 145 out of 321
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kal_A Homoglutathione synthet 100.0 2E-175 6E-180 1401.7 40.9 475 90-565 24-499 (499)
2 2hgs_A Protein (glutathione sy 100.0 6E-166 2E-170 1325.7 38.4 456 97-565 8-474 (474)
3 1m0w_A Glutathione synthetase; 100.0 9E-166 3E-170 1328.6 35.8 459 96-565 4-491 (491)
4 2wyo_A Glutathione synthetase; 100.0 2E-160 6E-165 1297.0 30.6 457 100-565 14-561 (562)
5 3n6x_A Putative glutathionylsp 98.7 6.9E-08 2.4E-12 104.4 13.0 357 98-501 33-417 (474)
6 2vob_A Trypanothione synthetas 97.8 0.00016 5.4E-09 81.1 14.5 181 149-359 267-456 (652)
7 2io8_A Bifunctional glutathion 97.6 0.00038 1.3E-08 77.6 12.7 180 149-359 254-440 (619)
8 1gsa_A Glutathione synthetase; 71.8 32 0.0011 32.8 11.5 42 450-494 156-202 (316)
9 1z2n_X Inositol 1,3,4-trisphos 29.5 59 0.002 31.6 5.2 58 194-258 259-316 (324)
10 2fb9_A D-alanine:D-alanine lig 26.9 39 0.0013 33.5 3.4 47 191-245 248-295 (322)
11 2wx4_A DCP1, decapping protein 23.0 30 0.001 26.3 1.2 26 178-203 13-39 (46)
12 4fu0_A D-alanine--D-alanine li 22.9 37 0.0013 34.2 2.4 44 191-239 274-317 (357)
13 2lnm_A Protein TIC 40, chlorop 22.7 69 0.0024 24.9 3.4 33 399-432 25-60 (62)
14 1e4e_A Vancomycin/teicoplanin 22.1 57 0.002 32.3 3.6 48 191-244 267-314 (343)
15 3se7_A VANA; alpha-beta struct 21.0 53 0.0018 32.8 3.1 43 191-238 267-309 (346)
16 2ip4_A PURD, phosphoribosylami 20.7 1E+02 0.0035 31.3 5.2 56 449-507 137-197 (417)
17 2wx3_A MRNA-decapping enzyme 1 20.1 34 0.0012 26.4 1.1 26 179-204 16-42 (51)
No 1
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=100.00 E-value=1.6e-175 Score=1401.68 Aligned_cols=475 Identities=70% Similarity=1.146 Sum_probs=456.6
Q ss_pred ccccc-CCCCCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHH
Q 008446 90 TKEAL-NLQSVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNEL 168 (565)
Q Consensus 90 ~~~~~-~~~~l~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~Fe~A~~lq~~~N~L 168 (565)
++|.+ +||.++++++++|+++|+|||++|||+|++++.+.++..+++.++|||||||||||||++|++|+++|++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~a~dwal~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~fe~a~~vq~~~NeL 103 (499)
T 3kal_A 24 AAPPLFDYHRIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQGCELAPIFNEL 103 (499)
T ss_dssp -CCCCCCTTSSCHHHHHHHHHHHHHHHHHTTCEEECTTSTTTTTSTTSSEEECCEESSCEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCHHHHHHHHHHHHHHHHHcCeEEecCCCccccccccccceecceEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 67755 99999999999999999999999999999998877766777889999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhh
Q 008446 169 VDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCL 248 (565)
Q Consensus 169 ~~rVS~D~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS~SFggLs~~ 248 (565)
||+||+|.+||.++|++++++|+||++||+||++|+++|++|+++|||||||||+|.+++++||||||||||||||||++
T Consensus 104 ~~~vs~D~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~l~Lgl~RSDYMld~~~~~lkQVEfNTIsaSFggls~~ 183 (499)
T 3kal_A 104 VDRVSLDGKFLQESLSRTKNADEFTSRLLDIHSKMLQINKKEDIRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCL 183 (499)
T ss_dssp HHHHHTCHHHHHHHTHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEETTTTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhhcCcCHHHHHHHHHHHHHHhcCCCCceeeeeeehhhhcCCCCCceEEEEeechhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEE
Q 008446 249 VSELHRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTI 328 (565)
Q Consensus 249 vs~lHr~l~~~y~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~vi 328 (565)
+++|||||++.|+.....+..++|+|++++++|+|||+||++|++++++||||||++|||+||||+|||+|+++|||+++
T Consensus 184 v~~lHr~l~~~~~~~~~~~~~~lp~N~a~~~la~gla~A~~~Y~~~~a~VLfVVQ~~ErNifDQr~lE~~L~~~~gI~vi 263 (499)
T 3kal_A 184 MTGLHKSLLSQYGKFLGLNSNRVPANNAVDQSAEALAKAWSEYNNPRAAILVVVQVEERNMYEQHYISALLREKHHIRSI 263 (499)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGSCCCCHHHHHHHHHHHHHHHHTCTTCEEEEEECSSCTTHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcccccccccccCCCChhHHHHHHHHHHHHHHhCCCCcEEEEEEcCCCccHHhHHHHHHHHHHhCCCcEE
Confidence 99999999998876655555679999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhHhhcceecCCCceEEcCeEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhhccHHHHHhhcCc
Q 008446 329 RKTLAEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKP 408 (565)
Q Consensus 329 R~Tl~el~~~~~l~~~~~L~vdg~EVaVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~p 408 (565)
|+||+||.++++++++++|+++|.||||||||+||+|+|||+|++|++|++||+|+|||||||+|||||||||||+|++|
T Consensus 264 R~t~~el~~~~~l~~~~~L~~~g~eVaVVYfRaGY~P~dYpse~~W~aRl~lE~S~AIKCPsI~~qLaGtKKVQQ~La~p 343 (499)
T 3kal_A 264 RKTLTEIDQEGKILPDGTLSVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAKP 343 (499)
T ss_dssp EECHHHHHHHEEECTTSCEEETTEEEEEEEEESCSSGGGCSSHHHHHHHHHHHHSSSEEETCHHHHHHTSHHHHHHTTST
T ss_pred EEEHHHHhhhceeCCCCeeEEcceEEEEEEeecCcCcccCCCHHHHHHHHHHHhcCcccCCCHHHHHhhhHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccCCCHHHHHHHHHhccccccCCcHHHHHHhhcCCCCccccCCCCCCCccccchhHHHHHHhccCCCCcccccee
Q 008446 409 NVLESRFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDEDAAYI 488 (565)
Q Consensus 409 gvLe~rFl~~~~~~~~lr~tFa~lysLD~~~~v~~A~~~P~~yVLKPQREGGGNNiYGedI~~~L~~l~~~~~~e~~aYI 488 (565)
++|| ||+++++++++||+||++|||||+++++++|+++|++||||||||||||||||+||+++|++|+++|++||++||
T Consensus 344 ~vLe-rFl~~~~~~~~lr~tFa~ly~LD~~~~~~~a~~~p~~~VLKPQREGGGNNiYg~dI~~~L~~l~~~~~~e~~ayI 422 (499)
T 3kal_A 344 GVLE-RFVENKDHIAKLRACFAGLWSLEDSDIVKKAIENPELFVMKPQREGGGNNIYGDELRETLLKLQEAGSQEDAAYI 422 (499)
T ss_dssp TTHH-HHCCCHHHHHHHHHHCCCEEETTCTTHHHHHHHCGGGEEEECSCCSSSCCBCHHHHHHHHHHCCC-----GGGCE
T ss_pred hHHH-HhcCCHHHHHHHHHHhhccCCCCchHHHHhhhhCHHHeeecccccCCccccchHHHHHHHHhcCccchhhHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999987778999999
Q ss_pred eccccCCCCcceEEEecCccccccceeccceeEEEEecCcEEEeeccceEEEeecCCCCCCCceeeccccccccccC
Q 008446 489 LMQRIFPSVSLTFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 565 (565)
Q Consensus 489 LMerI~Pp~~~n~lvR~g~~~~~~~vSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 565 (565)
|||||+||+++|++||+|++...++||||||||+++++++++++|+++|||||||++++|||||||||||||||+|+
T Consensus 423 LMerI~Pp~~~n~lvR~g~~~~~~~iSELGIfG~~l~~~~~i~~N~~~G~LlRTK~~~s~EGGVaaG~g~LDS~~L~ 499 (499)
T 3kal_A 423 LMQRIFPATSPAILVRDGNWDTGHVISEAGIFGTYLRNKDKIIINNESGYMVRTKISSSYEGGVLPGFGVVDTVYLT 499 (499)
T ss_dssp EEECCCCCCEEEEEEETTEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSCCCTTTTTCEEECEEEC
T ss_pred HHhhcCCCCCCeEEEECCccccCCeeeeccceEEEEeCCCeEEEcCcceEEEecCCCCCCCCCeeeeeeeccceeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=100.00 E-value=5.5e-166 Score=1325.67 Aligned_cols=456 Identities=42% Similarity=0.679 Sum_probs=435.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcceeeee-cCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCC
Q 008446 97 QSVDQDLVQKMVYDALVWSSLHGLVVGD-RSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLD 175 (565)
Q Consensus 97 ~~l~~~~~~~L~~~a~dwa~~hGl~~~~-~~~~~~~~~~~~~~~~aPftL~PspfPr~~Fe~A~~lq~~~N~L~~rVS~D 175 (565)
|.++++++++|+++|+|||++|||+|+| +..+ .+..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 8 ~~l~~~~~~~l~~~a~dwa~~hGl~~~p~~~~~-----~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D 82 (474)
T 2hgs_A 8 LLQDKQQLEELARQAVDRALAEGVLLRTSQEPT-----SSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 82 (474)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTT-----CCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCeEEeccCCCC-----CCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4588999999999999999999999995 4333 223689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccc-ccccCC--ccceEEeeceecccccchhhhHHH
Q 008446 176 GKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYM-LDEQTK--SLLQIEVNTISSSFSGLSCLVSEL 252 (565)
Q Consensus 176 ~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYM-ld~~~~--~lKQVE~NTIS~SFggLs~~vs~l 252 (565)
.+||+++|++++++|+||++||+||++|+++|++|+++||||||||| +|..++ +|||||||||||||||||++|++|
T Consensus 83 ~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~~~Lgl~RSDYM~l~~~~~~~~lKQVE~NTIs~SFggls~~v~~l 162 (474)
T 2hgs_A 83 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 162 (474)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcCCCCceeeeeeecccccccccCCCCceEEEEeechhhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 998766 799999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEEEech
Q 008446 253 HRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTL 332 (565)
Q Consensus 253 Hr~l~~~y~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~viR~Tl 332 (565)
||||++.|+.... ..++|+|++++++|+|||+||++|++++++||||||++|||+||||+|||+|+++ ||+++|+||
T Consensus 163 H~~l~~~~~~~~~--~~~~p~N~a~~~la~gla~A~~~Y~~~~~~vl~VVq~~E~N~~DQr~le~~L~~~-~I~~~R~t~ 239 (474)
T 2hgs_A 163 HRHVLSVLSKTKE--AGKILSNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLAR-NIHVIRRTF 239 (474)
T ss_dssp HHHHHHHTTCHHH--HTTSCCCCHHHHHHHHHHHHHHHHCCTTCEEEEECCSSCTTHHHHHHHHHHHHTT-TCCEEEECH
T ss_pred HHHHHHhhccccc--cccCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEecCCCcchHhHHHHHHHHHhC-CCcEEEeEH
Confidence 9999988765422 2458999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhHhhcceecCCCceEEcCeEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhhccHHHHHhhcCccchh
Q 008446 333 AEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPNVLE 412 (565)
Q Consensus 333 ~el~~~~~l~~~~~L~vdg~EVaVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~pgvLe 412 (565)
+||.++++++++|+|+++|.||||||||+||+|+|| +|.+|++|++||+|+|||||||+|||||||||||+|++|++||
T Consensus 240 ~el~~~~~l~~~~~L~~~~~eVaVVYfRaGY~P~dY-se~~W~aRl~lE~S~AIKcPsi~~qLaGtKKvQQ~La~p~vLe 318 (474)
T 2hgs_A 240 EDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQY-SLQNWEARLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLE 318 (474)
T ss_dssp HHHHHHEEECSSCCEEETTEEEEEEEESSCSSGGGC-CHHHHHHHHHHHHSSSEEESCHHHHHTTSHHHHHHTTSTTHHH
T ss_pred HHHhhhcccCCCCcEEEcCEEEEEEEecCCCChhhc-chHHHHHHHHHHhcCceeCCCHHHHHhhhHHHHHHhcChhHHh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hccC-CCHHHHHHHHHhccccccCCcH----HHHHHhhcCCCCccccCCCCCCCccccchhHHHHHHhccCCCCcc-ccc
Q 008446 413 SRFL-DNKEDIAKVRKCFAGLWSLDDS----EIVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDE-DAA 486 (565)
Q Consensus 413 ~rFl-~~~~~~~~lr~tFa~lysLD~~----~~v~~A~~~P~~yVLKPQREGGGNNiYGedI~~~L~~l~~~~~~e-~~a 486 (565)
||+ .|++++++||+||++|||||++ +++++|+++|++||||||||||||||||+||+++|++|+++ | |++
T Consensus 319 -rfl~~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~A~~~p~~~VLKPQREGGGNNiYg~dI~~~L~~l~~~---e~~~a 394 (474)
T 2hgs_A 319 -MLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDS---EERAS 394 (474)
T ss_dssp -HHSTTCHHHHHHHHHTCCCEEECSSSHHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTS---GGGGG
T ss_pred -hhcCCCHHHHHHHHHhhhcccCCCcchhhhHHHHHHHhCchheeecCcccCCccccchHHHHHHHHhcCCc---cccee
Confidence 999 5899999999999999999974 68999999999999999999999999999999999999875 6 999
Q ss_pred eeeccccCCCCcceEEEecCc-cccccceeccceeEEEEecCcEEEeeccceEEEeecCCCCCCCceeeccccccccccC
Q 008446 487 YILMQRIFPSVSLTFLMRDGI-CHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 565 (565)
Q Consensus 487 YILMerI~Pp~~~n~lvR~g~-~~~~~~vSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 565 (565)
|||||||+||+++|++||+|+ +..+++||||||||++++++++++.|+++|||||||++++|||||||||||||||+|+
T Consensus 395 yILMerI~Pp~~~~~~vR~g~~~~~~~~iSELGIfg~~l~~~~~v~~N~~~G~LlRTK~~~s~EGGVaaG~g~lDS~~L~ 474 (474)
T 2hgs_A 395 YILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV 474 (474)
T ss_dssp EEEEECCCCCCEEEEEECTTSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred eeeeecccCCCCCeEEEECCccccccceeeccceeEEEEECCCEEEEecceeEEEEecCCCCCCCCeeeeeecccceeeC
Confidence 999999999999999999999 7889999999999999999999999999999999999999999999999999999996
No 3
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural genomics, PSI, protein structure initiative; HET: ANP 3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4 d.142.1.6 PDB: 1m0t_A*
Probab=100.00 E-value=9.2e-166 Score=1328.57 Aligned_cols=459 Identities=36% Similarity=0.579 Sum_probs=434.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCC
Q 008446 96 LQSVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLD 175 (565)
Q Consensus 96 ~~~l~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~Fe~A~~lq~~~N~L~~rVS~D 175 (565)
||. +++++++|+++|+|||++|||+|++ ..+.+ ++..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 4 ~pp-~~~~~~~l~~~a~dwa~~hGl~~~~-~~~~~---~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D 78 (491)
T 1m0w_A 4 YPP-SKDQLNELIQEVNQWAITNGLSMYP-PKFEE---NPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQD 78 (491)
T ss_dssp --C-CHHHHHHHHHHHHHHHHHHTCEECC-TTGGG---CTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHCCcEEec-CCCCC---CCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777 8999999999999999999999998 44321 224689999999999999999999999999999999999999
Q ss_pred ----HHHHHHHHhcccCCC-hhhHHHHHHHHHHHh--ccCCCceeeeeeeccccccccCC--ccceEEeeceecccccch
Q 008446 176 ----GKFLQESLSRTKKVD-PFTSRLLDIHSKMLE--LNKKEDIRLGLHRSDYMLDEQTK--SLLQIEVNTISSSFSGLS 246 (565)
Q Consensus 176 ----~~fL~~~l~~~~~~D-~Ft~~L~~I~~~v~~--~g~~q~i~LGL~RSDYMld~~~~--~lKQVE~NTIS~SFggLs 246 (565)
.+||.++|++++++| +||++||+||++|++ +|++|+++|||||||||+|...+ +|||||||||||||||||
T Consensus 79 ~~~~~~fL~~~l~~~~~~D~~Ft~~L~~I~~~v~~~~~g~~q~~~Lgl~RSDYMl~~~~~~~~~KQVE~NTIs~Sfggls 158 (491)
T 1m0w_A 79 MAQPDSYLHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLS 158 (491)
T ss_dssp HTCTTSHHHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHH
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccccCceeeeeeehhhccCCCCCCCceeEEEeechhhhcchHH
Confidence 999999999999999 999999999999999 99999999999999999998765 799999999999999999
Q ss_pred hhhHHHHHHHHHhhc-----cccCCCCCCCCCCchHHHHHHHHHHHHHHhCCC-------CcEEEEEEeCCCCccchhhH
Q 008446 247 CLVSELHRSLLIHYG-----ERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNA-------RALVLVVVQSEEHNMYDQHW 314 (565)
Q Consensus 247 ~~vs~lHr~l~~~y~-----~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~-------~avVLfVVq~~ErNi~DQr~ 314 (565)
++|++|||||++++. ..+.. ..+|+|++++++|+|||+||++|+++ +++||||||++|||+||||+
T Consensus 159 ~~v~~lH~~l~~~~~~~~~~~~~~~--~~~p~N~a~~~la~gla~A~~~y~~~~~~~~~~~~~vl~VVq~~E~N~~DQr~ 236 (491)
T 1m0w_A 159 EKVDRLHSYLNRANKYDPKGPIYND--QNMVISDSGYLLSKALAKAVESYKSQQSSSTTSDPIVAFIVQRNERNVFDQKV 236 (491)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCSSCG--GGBCCCCHHHHHHHHHHHHHHHHHHTCC-----CCEEEEEECTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccc--ccCCCCchHHHHHHHHHHHHHHhcCccccccCCCcEEEEEecCCCcchhhHHH
Confidence 999999999998641 11221 36899999999999999999999876 78999999999999999999
Q ss_pred HHHHHHhhCCceEEEechhhHhhcceec-CCCceEEcC--eEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCch
Q 008446 315 LSSVLKERHNVTTIRKTLAEIDAEGELL-PDGTLLVGG--QVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSI 391 (565)
Q Consensus 315 lE~~L~~~~gI~viR~Tl~el~~~~~l~-~~~~L~vdg--~EVaVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI 391 (565)
|||+|+++|||+++|+||+||.++++++ ++|+|+++| .||||||||+||+|+|||+|++|++|++||+|+|||||||
T Consensus 237 lE~~L~~~~~I~~~R~t~~el~~~~~l~~~~~~L~~~~~~~eVaVVYfRaGY~P~dY~se~~W~aRl~lE~S~AIKcPsi 316 (491)
T 1m0w_A 237 LELNLLEKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDTEQEIAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDL 316 (491)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHEEECTTTCCEEETTTCCEEEEEEEESCSSGGGCCSHHHHHHHHHHHHSSSEEETCH
T ss_pred HHHHHHHhcCCcEEEEEHHHHhhhCccCCCCCeEEEcCCceEEEEEEecCCCChhhCCchhHHHHHHHHHhcCceeCCCH
Confidence 9999999999999999999999999998 789999999 8999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHHHhhcCccchhhccCCCHHHHHHHHHhccccccCCcH----HHHHHhhcCCCCccccCCCCCCCccccch
Q 008446 392 SYHLAGTKKIQQELAKPNVLESRFLDNKEDIAKVRKCFAGLWSLDDS----EIVSKAIENPELYVMKPQREGGGNNIYGE 467 (565)
Q Consensus 392 ~~qLaGtKKVQQ~La~pgvLe~rFl~~~~~~~~lr~tFa~lysLD~~----~~v~~A~~~P~~yVLKPQREGGGNNiYGe 467 (565)
+|||||||||||+|++|++|| ||++|++++++||+||++|||||++ +++++|+++|++||||||||||||||||+
T Consensus 317 ~~qLaGtKKvQQ~La~p~vLe-rfl~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~A~~~p~~~VLKPQREGGGNNiYg~ 395 (491)
T 1m0w_A 317 LTQLSGSKKIQQLLTDEGVLG-KYISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKE 395 (491)
T ss_dssp HHHHHTCHHHHHHTTSHHHHT-TTCCCHHHHHHHHTTCCCEEECSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGG
T ss_pred HHHHhhhHHHHHHhCChhHHH-hhcCCHHHHHHHHHhhhcccCCCcchhhhHHHHHHHhChhheeecCcccCCcccccHH
Confidence 999999999999999999999 9999999999999999999999975 58999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCccccceeeccccCCCCc-ceEEEecCccccccceeccceeEEEEecCcEEEeeccceEEEeecCCC
Q 008446 468 DVKETLLRLKKDGTDEDAAYILMQRIFPSVS-LTFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVAS 546 (565)
Q Consensus 468 dI~~~L~~l~~~~~~e~~aYILMerI~Pp~~-~n~lvR~g~~~~~~~vSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~ 546 (565)
||+++|++|+++ ||++|||||||+||++ +|++||+|++..+++||||||||++++++++++.|+++|||||||+++
T Consensus 396 dI~~~L~~l~~~---e~~ayILMerI~Pp~~~~~~~vR~g~~~~~~~iSELGIfG~~l~~~~~v~~N~~~G~LlRTK~~~ 472 (491)
T 1m0w_A 396 NIPNFLKGIEER---HWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNT 472 (491)
T ss_dssp GHHHHHHTSCGG---GGGGEEEEECCCCCCBCSCCEEETTEEECCCBEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCE
T ss_pred HHHHHHHhcCHh---hcceeeeeecccCCCCCCeEEEECCccccCCeeecccceEEEEECCCEEEEecceeEEEEecCCC
Confidence 999999999876 9999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeccccccccccC
Q 008446 547 SNEGGVAAGFAVLDSLYLT 565 (565)
Q Consensus 547 s~EGGVaaG~g~LDS~~L~ 565 (565)
+|||||||||||||||+|+
T Consensus 473 s~EGGVaaG~g~lDS~~L~ 491 (491)
T 1m0w_A 473 SNEGGVAAGFGCLDSIILY 491 (491)
T ss_dssp EETTEEEECCEEECCEEEC
T ss_pred CCCCCeeeeeecccceeeC
Confidence 9999999999999999996
No 4
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A {Trypanosoma brucei}
Probab=100.00 E-value=1.7e-160 Score=1296.96 Aligned_cols=457 Identities=33% Similarity=0.509 Sum_probs=409.7
Q ss_pred CHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCCHHHH
Q 008446 100 DQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLDGKFL 179 (565)
Q Consensus 100 ~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~Fe~A~~lq~~~N~L~~rVS~D~~fL 179 (565)
.+.++++|+++|+|||++|||+|++++. ..++|||||||||||||++|++|+++|++||+|||+||+|.+||
T Consensus 14 ~~~~~~~l~~~a~dwa~~hGl~~~~~~~--------~~~~~aP~tL~PspfPr~~F~~a~~~q~~~NeL~~~vS~D~~fL 85 (562)
T 2wyo_A 14 LELGAERYAEQFAAKCHELGMVMKESAG--------PGRVPVPVTLQPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFL 85 (562)
T ss_dssp HHTTCCSHHHHHHHHHHHHTCEEECSSS--------SCEEECCEESSCEEEEHHHHHHHHHTHHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcEEeecCC--------CceeecceEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455678999999999999999997653 25799999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCC-hhhHHHHHHHHHHHhcc-CCCceeeeeeecccccccc-----C---CccceEEeeceecccccchhhh
Q 008446 180 QESLSRTKKVD-PFTSRLLDIHSKMLELN-KKEDIRLGLHRSDYMLDEQ-----T---KSLLQIEVNTISSSFSGLSCLV 249 (565)
Q Consensus 180 ~~~l~~~~~~D-~Ft~~L~~I~~~v~~~g-~~q~i~LGL~RSDYMld~~-----~---~~lKQVE~NTIS~SFggLs~~v 249 (565)
+++|++++++| +||++||+||++|+++| +.|+++|||||||||+|.+ + .+|||||||||||||||||++|
T Consensus 86 ~~~l~~~~~~D~~Ft~~L~~I~~~v~~~g~~~q~l~Lgl~RSDYM~~~~~~~~~~~~~~~~KQVE~NTIS~SFggls~~v 165 (562)
T 2wyo_A 86 RDALQETAASDVNFTGKLLNMLQEVYLSGGPFQQLMLGIFRTDYMREGVYDKMLSTTASRWKNVEINTISCSFAGLSPLI 165 (562)
T ss_dssp HHHTHHHHHHCTTTHHHHHHHHHHHHSSSSCCCCCEEEEEEEEEEEBSCCCC--CCSSCSEEEEEEECSSCCCTTTHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCccCceeeeeeehhhhcCccccccccccccceeEEEeechhhhcchhHHHH
Confidence 99999999999 99999999999999999 9999999999999999973 2 3799999999999999999999
Q ss_pred HHHHHHHHH---hh----ccccCCC-----------CCCCCCCchHHHHHHHHHHHHHH-------------hCC-----
Q 008446 250 SELHRSLLI---HY----GERLGLD-----------SKKVPGNSAVIQFAEAMAKAWTE-------------YNN----- 293 (565)
Q Consensus 250 s~lHr~l~~---~y----~~~~~~~-----------~~~lp~N~al~~la~gLa~A~~~-------------Y~~----- 293 (565)
++|||||++ .+ ++..... ..++|+|++++++|+|||+||++ |++
T Consensus 166 ~~lH~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~N~a~~~la~gla~A~~~~~~~~~~~~~~~~Y~~~~~~~ 245 (562)
T 2wyo_A 166 TEFHQHIAAYLQVLQKARGKEDDDGVENMSWIWGKGNCRLERSVSGDVVPKAIADAVRAWVEQQKFASLRASWEQFQQNE 245 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----CCCCCCGGGCCSSSEECCCTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTC-----
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccccCCCCchHHHHHHHHHHHHHhhhccccccchhhccccccccc
Confidence 999999995 23 1101111 13579999999999999999999 987
Q ss_pred -------------CCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEEEechhhHhhcceec---CC-Cc-eEEcC-eEE
Q 008446 294 -------------ARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTLAEIDAEGELL---PD-GT-LLVGG-QVI 354 (565)
Q Consensus 294 -------------~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~viR~Tl~el~~~~~l~---~~-~~-L~vdg-~EV 354 (565)
++++||||||++|||+||||+|||+|+++|||+++|+||+||...++++ ++ ++ |+++| .||
T Consensus 246 ~~~~~~~~~~~~~~~~vVL~VVQ~~ErN~~DQr~le~~L~~~hgI~~iR~Tl~el~~~~~l~~~~~~~~~~L~~~g~~eV 325 (562)
T 2wyo_A 246 VGSGEIHQLGVLDTAPVVLVVVQENERNTADQYALLMRVLEEHRIRFIFRTLQELHLSLKLHSISPEQPPLAVVDGHYPI 325 (562)
T ss_dssp ----------CCCSSCEEEEEECSSCSCHHHHHHHHHHHHHTTCCCEEEECHHHHHHHEEEECSSTTSCCEEEETTTEEE
T ss_pred cccccccccccCCCCcEEEEEecCCCcchHhHHHHHHHHHHhcCCcEEEeEHHHHhhhcccCccCCCCCceEEecCceEE
Confidence 7899999999999999999999999999999999999999999999998 77 89 99999 999
Q ss_pred EEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhhccHHHHHhhcCcc-chhhcc--CCCHHHHHHHHHhccc
Q 008446 355 AVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPN-VLESRF--LDNKEDIAKVRKCFAG 431 (565)
Q Consensus 355 aVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~pg-vLe~rF--l~~~~~~~~lr~tFa~ 431 (565)
||||||+||+|+|||+|.+|++|++||+|+|||||||+|||||||||||+|++|+ +|+ || ++|++++++||+||++
T Consensus 326 aVVYfRaGY~P~dYpse~~W~aRl~lE~S~AIKCPsI~~qLaGtKKVQQ~La~p~~vLe-rf~~l~~~~~~~~lr~tFa~ 404 (562)
T 2wyo_A 326 AVAYFRSTYVPEDFPTDATWAARLSLERSSAIKCPSIPYHLLTFKKLQQLLCDVDRVLV-PVAFCGDSDKAGLLQRHFVP 404 (562)
T ss_dssp EEEEEESCSSGGGCCSHHHHHHHHHHHHSSCEEETCHHHHHTTSHHHHHHTTCCCCCCC-CCCSTTCHHHHHHHHTTCCC
T ss_pred EEEEecCCCChhhCCchhhHHHHHHHHhcCcccCCCHHHHHhhhHHHHHHhcCchhhhh-hhhcCCCHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999 999 99 9899999999999999
Q ss_pred cccCCcH----HH----HHHhhcCCCCccccCCCCCCCccccchhHHHHHHhccCCCC----ccccceeeccccCCCCcc
Q 008446 432 LWSLDDS----EI----VSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGT----DEDAAYILMQRIFPSVSL 499 (565)
Q Consensus 432 lysLD~~----~~----v~~A~~~P~~yVLKPQREGGGNNiYGedI~~~L~~l~~~~~----~e~~aYILMerI~Pp~~~ 499 (565)
|||||++ ++ +++|+++|++||||||||||||||||+||+++|++|+++++ +||++|||||||+||+++
T Consensus 405 ly~Ld~~~~g~~~~~~~~~~A~~~p~~~VLKPQREGGGNNiyG~dI~~~L~~l~~~~~~~~~~e~~ayILMerI~Pp~~~ 484 (562)
T 2wyo_A 405 QYSLNPKEVGEEAVEKVIHDVLQRPDQFVLKPQLEGGGNLLSGETMVKALKATKEGDPVTYSKVRCEYVVMSRIQFHVST 484 (562)
T ss_dssp EEECSCSSCTTTTHHHHHHSTTSCCCCCSSSCCSCCCSSHHHHHHCC------------CTTTTTSSCEEECCCCBCCEE
T ss_pred ccCCCcchhhhhhhHHHHHHHhhChhheeecCCccCCccccchHHHHHHHHhcCCccccccccccceeEEEecccCCCCC
Confidence 9999975 46 89999999999999999999999999999999999987532 599999999999999999
Q ss_pred eEEEecCc--cccccceeccceeEEEEecC---------cEEEeeccceEEEeecCCCCCCCceeeccccccccccC
Q 008446 500 TFLMRDGI--CHKDHAISELGIYGAYLRIK---------EKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 565 (565)
Q Consensus 500 n~lvR~g~--~~~~~~vSELGIfG~~l~~~---------~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 565 (565)
|++||+|+ +...++||||||||++|+++ +++++|+++|||||||++++|||||||||||||||+|+
T Consensus 485 ~~~vR~g~~~~~~~~~iSELGIfG~~l~~~~~~~~~~~~~~v~~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 561 (562)
T 2wyo_A 485 GSLLARGDVVQLERNMCSEVGIFGVILSAAKGSSVGTNGSSVLFNTFAGYTVRSKPADADDGGVMAGVAALDSLAVV 561 (562)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEEEEEEECCTTCCSSGGGCSEEEEEEEEEEEEEEETTC--------CCCEECEEEE
T ss_pred eEEEECCccccccCCeeeecceeEEEEECCCcccccCCCCceEeccceeEEEEecCCCCCCCCeeeeeecccceeec
Confidence 99999999 67899999999999999999 89999999999999999999999999999999999985
No 5
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=98.71 E-value=6.9e-08 Score=104.41 Aligned_cols=357 Identities=11% Similarity=0.163 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHH----HHHhhHHHHHHHHhh
Q 008446 98 SVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREA----CELAPIFNELVDRVS 173 (565)
Q Consensus 98 ~l~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~Fe~A----~~lq~~~N~L~~rVS 173 (565)
.++++++....+.+...-..+|+.+.--.... + .-...||.+.|--++.+.|++. .+-..++|.+++.|=
T Consensus 33 ~~~~~~l~~r~~~~~~~~~~~Gitf~vy~~~~-~-----~~r~~p~d~iP~ii~~~eW~~le~Gl~QR~~~Ln~~l~DiY 106 (474)
T 3n6x_A 33 DVPHQQLESKRQEAELLFRRVGITFNVYGEDA-G-----AERLIPFDVVPRILSASEWARLSDGAIQRVKALNMFLHDVY 106 (474)
T ss_dssp HSSTTTTSSHHHHHHHHHHHHCCCC-----------------CCCBCSSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEeccCCC-C-----CCcccccCCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666777888888899999876432211 0 1257999999999999999986 445678899999888
Q ss_pred CCHHHHHHHHhc-ccCCC-hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhhhHH
Q 008446 174 LDGKFLQESLSR-TKKVD-PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCLVSE 251 (565)
Q Consensus 174 ~D~~fL~~~l~~-~~~~D-~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS~SFggLs~~vs~ 251 (565)
.+.+.|.+-+-+ ++..+ .|.. .+..-.....+.+.|.|.|...+. .|.|+-+|.||=+-|..+..-.--.
T Consensus 107 g~q~il~~G~iP~lv~~~p~y~~-------~~~g~~p~~~~~~~i~~~Dl~r~~-dG~~~vlEdn~~~PSG~~y~lenR~ 178 (474)
T 3n6x_A 107 HDQEIIKAGIVPSSILANAQYRP-------EMFGVDVPGGVYAHIAGVDLVRTG-ENDFYVLEDNLRTPSGVSYMLENRK 178 (474)
T ss_dssp TTCHHHHTTSSCGGGGGCTTCCG-------GGTTCCCGGGCSCSEEEEEEEECS-SSCEEEEEEECSSCCCHHHHHHHHH
T ss_pred CChhHHhcCCCHHHHccCccccH-------HHCCCCCCCCeEEEEEEEEEEECC-CCCEEEEEeCCCCCchHHHHHHHHH
Confidence 888877663221 11111 2221 112222345677999999988875 5789999999988885443311111
Q ss_pred HHHHHHHh-hccccCCCCCCCCCC-chHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhh-CCceEE
Q 008446 252 LHRSLLIH-YGERLGLDSKKVPGN-SAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKER-HNVTTI 328 (565)
Q Consensus 252 lHr~l~~~-y~~~~~~~~~~lp~N-~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~-~gI~vi 328 (565)
+...+... +... ++..+ .-...|.++|..++.. +..+|.|+++ .|+..|-. +.|.....+ .|+..+
T Consensus 179 ~~~r~~pelf~~~------~v~~~~~~~~~l~~~L~~~a~~-~~~~P~VvvL-tpG~~ne~---yfEhafLA~~lG~~Lv 247 (474)
T 3n6x_A 179 MMMRLFPELFRRY------PVAPVEHYPQVLLNNLRAVAQA-GVHEPTVVLL-TPGAYNSA---YFEHAFIAQQMGIELV 247 (474)
T ss_dssp HHHHHCHHHHHHS------CBCCCTTHHHHHHHHHHHTSCT-TCSSCCEEEE-CCCSSSTT---HHHHHHHHHHHTCEEE
T ss_pred HHHHHhHHHHHhc------CCCCchhHHHHHHHHHHHhccc-CCCCCEEEEE-CCCCchhH---HHHHHHHHhcCCcEEe
Confidence 22222211 2111 12222 2235666666555331 2245665444 48887753 555554433 376644
Q ss_pred EechhhHhhcceecCCCceEEc----CeEEEEEEeecCCCCCCCCChhhH---------HHHHhhhhcccccCCchhhhh
Q 008446 329 RKTLAEIDAEGELLPDGTLLVG----GQVIAVVYFRAGYAPTDYPSESEW---------RARLLMEQSSAVKCPSISYHL 395 (565)
Q Consensus 329 R~Tl~el~~~~~l~~~~~L~vd----g~EVaVVYfRaGY~P~dYpse~eW---------~aRl~LE~S~AIKCPsI~~qL 395 (565)
.-.|| .+ .|++|++. .++|.|||=|- .++|-++.+- -.......-...-...+..++
T Consensus 248 --eg~DL----~v-~dg~v~~rt~~G~~~VDVIyRRv---dd~~lDpl~~~~dS~lGv~gLl~A~r~G~V~i~Na~gsgv 317 (474)
T 3n6x_A 248 --EGQDL----FV-RNNAVYMRTTEGPKRVDVIYRRI---DDDFIDPLSFRPDSMLGVPGLLSVYRNGGVTLANAVGTGV 317 (474)
T ss_dssp --CGGGE----EE-CSSCEEECCTTCCEEECEEEECS---CGGGSCTTTSCTTCSSSCTTHHHHHHTTSCEEESCTTTHH
T ss_pred --chhhe----EE-ECCEEEEecCCCCeEEEEEEEcC---CHHhcCccccCCCcccccHHHHHHHHcCCEEEeCCCchhh
Confidence 22222 23 46888873 48999999998 4666543221 122223333444456778889
Q ss_pred hccHHHHHhhcCccchhhccCCCHHHHHHHHHhccccccCCcHHHHHHhhcCCCCccccCCCCCCCcc-ccc-----hhH
Q 008446 396 AGTKKIQQELAKPNVLESRFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREGGGNN-IYG-----EDV 469 (565)
Q Consensus 396 aGtKKVQQ~La~pgvLe~rFl~~~~~~~~lr~tFa~lysLD~~~~v~~A~~~P~~yVLKPQREGGGNN-iYG-----edI 469 (565)
+-.|-++-.|.+ ..+ .|++ ++ .|.. .++-|-..+.+..+.+++|-+++|+||--+.||.- +.| +++
T Consensus 318 ~~dKal~a~Lp~--l~~-~~lg-Ee---~il~-~VpT~~c~~~~~~~~vl~~l~~lViKp~~g~gg~gv~iG~~~s~~e~ 389 (474)
T 3n6x_A 318 ADDKDTYIYVPE--MIR-FYLG-EE---PILS-NVPTYQLSKADDLKYVLDNLAELVVKEVQGSGGYGMLVGPAASKQEL 389 (474)
T ss_dssp HHSTTTGGGHHH--HHH-HHHC-SC---CSSE-ECCCEETTSHHHHHHHHHSGGGEEEEECCCE-----EEGGGCCHHHH
T ss_pred hcCcHHHHHhHH--HHH-HhCC-Hh---hhcc-CCCceecCCHHHHHHHHhchhheEEEecCCCCCCceEECCcCCHHHH
Confidence 999988888843 334 4443 22 2233 24555556667788889999999999988766543 333 345
Q ss_pred HHHHHhccCCCCccccceeeccccCCCCcceE
Q 008446 470 KETLLRLKKDGTDEDAAYILMQRIFPSVSLTF 501 (565)
Q Consensus 470 ~~~L~~l~~~~~~e~~aYILMerI~Pp~~~n~ 501 (565)
.++++++.. +-..||.-+.|.+.+.+.+
T Consensus 390 ~~~~~~i~~----~p~~yIaQe~v~ls~~P~~ 417 (474)
T 3n6x_A 390 EDFRQRILA----NPANYIAQPTLALSTCPTL 417 (474)
T ss_dssp HHHHHHHHH----SGGGEEEEECCCCCEEEEE
T ss_pred HHHHHHHHh----CCCCEEEeeccCCccccee
Confidence 556665654 3457999999999877776
No 6
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=97.83 E-value=0.00016 Score=81.10 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=103.2
Q ss_pred CCCHHHHHHH----HHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccccc
Q 008446 149 SFPESHFREA----CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLD 224 (565)
Q Consensus 149 pfPr~~Fe~A----~~lq~~~N~L~~rVS~D~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld 224 (565)
.|+++.+++. .++-.++.+++++|-.|.+|+.. |. ..+ .+|+.-+..-+ ...+. -+-|-|+.+|
T Consensus 267 ~~t~~e~e~L~~at~eL~~m~l~a~~~vl~~~~l~~~-lg----IP~---~l~~lI~~sw~--~~~p~--lygRfDf~~d 334 (652)
T 2vob_A 267 ESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLRL-FA----IPE---EFWPRIRHSWK--YQQTY--ISGRFDFAFN 334 (652)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH-TT----CCG---GGHHHHHHHHH--HEECC--CEEEEEEEEC
T ss_pred EeCHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-cC----cCH---HHHHHHHhccc--cCCCc--eEEEEEEEEc
Confidence 4556666554 45556667777777888776522 22 222 23333222211 12222 3559999999
Q ss_pred ccCCccceEEeeceecccccchhhhHHHHHHHHHh-hccccCCCCCCCCCCchHHHHHHH-HHHHHHHhCCCCcEEEEEE
Q 008446 225 EQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLIH-YGERLGLDSKKVPGNSAVIQFAEA-MAKAWTEYNNARALVLVVV 302 (565)
Q Consensus 225 ~~~~~lKQVE~NTIS~SFggLs~~vs~lHr~l~~~-y~~~~~~~~~~lp~N~al~~la~g-La~A~~~Y~~~~avVLfVV 302 (565)
..++.+|.+|+|.=+.++. + -.+.+....++. ++ . ...++.-..+-+. |.++|+.+... +.|-|+.
T Consensus 335 g~~g~~KllE~NADTPt~l-~--Eaa~iq~~w~e~~~~----~----~~~~dq~n~l~e~~L~~~~~~~~~~-~~v~~~~ 402 (652)
T 2vob_A 335 NETGEVKCFEYNADSASTL-L--ECGLIQQKWAESVGL----D----KQDTRGSGFAVERNLKMAWANSGAT-GRVHFCV 402 (652)
T ss_dssp TTTCCEEEEEEETTCCTTH-H--HHHTHHHHHHHHTTC----C----CTTEEETTTTHHHHHHHHHHHSCCC-SEEEEEE
T ss_pred CCCCceEEEEEcCCCchHH-H--HHHHHHHHHHHHhcC----C----CCccchhhHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 7656799999999888773 2 222333344443 32 0 1123334455666 88999998765 5555553
Q ss_pred eCC-CCccchhhHHHHHHHhhCCceEEEec-hhhHhhcceecCCCceE-EcCeEEEEEEe
Q 008446 303 QSE-EHNMYDQHWLSSVLKERHNVTTIRKT-LAEIDAEGELLPDGTLL-VGGQVIAVVYF 359 (565)
Q Consensus 303 q~~-ErNi~DQr~lE~~L~~~~gI~viR~T-l~el~~~~~l~~~~~L~-vdg~EVaVVYf 359 (565)
.+. |.. +--++|...+ +..|+.+.-.. +.||. .+.+|+|+ .+|++|.+||=
T Consensus 403 ~~~~ED~-~t~~yL~~~a-~eaG~~t~~~~~i~dL~----~~~~G~l~D~~g~~Id~lfK 456 (652)
T 2vob_A 403 DEEREEQ-YTALYCMQAA-EAVGLEGKLCILFDEFR----FDDNGHVVDSDGVRVRNVWK 456 (652)
T ss_dssp CSCHHHH-HHHHHHHHHH-HHTTCEEEEEETTTTCE----ECTTSCEECTTSCBCCEEEE
T ss_pred CCchHHH-HHHHHHHHHH-HHCCCcEEEecchhheE----ECCCCcEECCCCcEeeEEEe
Confidence 332 211 1113333333 45699999887 77663 34567766 46789999863
No 7
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.58 E-value=0.00038 Score=77.63 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=104.8
Q ss_pred CCCHHHHHHH----HHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccccc
Q 008446 149 SFPESHFREA----CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLD 224 (565)
Q Consensus 149 pfPr~~Fe~A----~~lq~~~N~L~~rVS~D~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld 224 (565)
.|+++.+++. .++-.++.+++++|-.|.+|+. .+ ... ..+|+.-++.-+. ..+- .-+-|-|+.+|
T Consensus 254 ~~s~~e~e~l~~at~eL~~m~~~a~~~v~~~~~l~~----~l-giP---~~~~~lI~~sw~~--~~~~-~l~gRfDf~~d 322 (619)
T 2io8_A 254 TITESAEQELIKATNELHLMYLHATDKVLKDDNLLA----LF-DIP---KILWPRLRLSWQR--RRHH-MITGRMDFCMD 322 (619)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHG----GG-CCC---GGGHHHHHHHHHH--STTC-CCEEEEEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----Hc-CCC---HHHHHHHHhcccc--CCCC-CeEEEEEEEEe
Confidence 4555555554 4556667777777777876652 22 122 2344433332211 2221 23569999999
Q ss_pred ccCCccceEEeeceecccccchhhhHHHHHHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeC
Q 008446 225 EQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQS 304 (565)
Q Consensus 225 ~~~~~lKQVE~NTIS~SFggLs~~vs~lHr~l~~~y~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~ 304 (565)
.. + +|.+|+|.=+.++. +-+ +.+....++.++. ++.++....+.+.|.++|+....+ ++|-|+..+
T Consensus 323 g~-g-~KllE~NaDTPt~l-~Ea--a~iq~~wle~~~~--------~~~~dq~n~l~e~L~~~~~~~~~~-~~v~~a~~~ 388 (619)
T 2io8_A 323 ER-G-LKVYEYNADSASCH-TEA--GLILERWAEQGYK--------GNGFNPAEGLINELAGAWKHSRAR-PFVHIMQDK 388 (619)
T ss_dssp TT-E-EEEEEEECSSCCCH-HHH--HTHHHHHHHHHCC--------SSCBCTTTTHHHHHHHHHHTSCCC-SEEEEEECS
T ss_pred CC-e-eEEEEEeCCchHHH-HHH--HHHHHHHHHhcCC--------CCCchhhhHHHHHHHHHHHHhcCC-CEEEEEecC
Confidence 65 4 99999999888773 222 2333444444321 334445566788899999988765 555554333
Q ss_pred C-CCccchhhHHHHHHHhhCCceEEEec-hhhHhhcceecCCCceE-EcCeEEEEEEe
Q 008446 305 E-EHNMYDQHWLSSVLKERHNVTTIRKT-LAEIDAEGELLPDGTLL-VGGQVIAVVYF 359 (565)
Q Consensus 305 ~-ErNi~DQr~lE~~L~~~~gI~viR~T-l~el~~~~~l~~~~~L~-vdg~EVaVVYf 359 (565)
. |.. +--++|...+ ++.|+.+.-.. +.||. ++.+|+|+ .+|..|..||=
T Consensus 389 ~~Ed~-~t~~~L~~~a-~eaG~~~~~~~~i~dl~----~~~~G~l~d~dg~~I~~lfk 440 (619)
T 2io8_A 389 DIEEN-YHAQFMEQAL-HQAGFETRILRGLDELG----WDAAGQLIDGEGRLVNCVWK 440 (619)
T ss_dssp CHHHH-HHHHHHHHHH-HHTTCEEEEEESSTTCE----ECSSSCEECTTSCBCCEEEE
T ss_pred Cccch-HHHHHHHHHH-HHCCCceEEecchHhEE----ECCCCcEECCCCCEeeeEEe
Confidence 2 211 1223443333 45699998886 87664 34567665 47889988863
No 8
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=71.80 E-value=32 Score=32.81 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=28.4
Q ss_pred CccccCCCCCCCcccc-----chhHHHHHHhccCCCCccccceeeccccC
Q 008446 450 LYVMKPQREGGGNNIY-----GEDVKETLLRLKKDGTDEDAAYILMQRIF 494 (565)
Q Consensus 450 ~yVLKPQREGGGNNiY-----GedI~~~L~~l~~~~~~e~~aYILMerI~ 494 (565)
-+|+||-+.|||..++ .+++...++.+... ....||+.+.|.
T Consensus 156 p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~---~~~~~lvqe~i~ 202 (316)
T 1gsa_A 156 DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEH---GTRYCMAQNYLP 202 (316)
T ss_dssp SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTT---TTSCEEEEECCG
T ss_pred CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhc---CCceEEEecccC
Confidence 5999999999998764 23566666655432 224577777775
No 9
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=29.53 E-value=59 Score=31.57 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhhhHHHHHHHHH
Q 008446 194 SRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLI 258 (565)
Q Consensus 194 ~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS~SFggLs~~vs~lHr~l~~ 258 (565)
.++.++..++.+. +-+++.|-|++++..++.+.-+|+|+.. +|.+++.- ..+=.++.+
T Consensus 259 ~~i~~~a~~~~~~-----lg~~~~~vD~~~~~~~g~~~vlEvN~~P-g~~~~~~~-~~i~~~l~~ 316 (324)
T 1z2n_X 259 AEMRDLAYKVRCA-----LGVQLCGIDFIKENEQGNPLVVDVNVFP-SYGGKVDF-DWFVEKVAL 316 (324)
T ss_dssp HHHHHHHHHHHHH-----HTCSEEEEEEECGGGCSSCEEEEEEESC-CTTSCBCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hCCcEEeeEEEEEcCCCCEEEEEEcCCC-CcCCCCCH-HHHHHHHHH
Confidence 4666666666432 3345789999998666788999999974 77777643 244444443
No 10
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=26.85 E-value=39 Score=33.50 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHhccCCCceee-eeeeccccccccCCccceEEeeceecccccc
Q 008446 191 PFTSRLLDIHSKMLELNKKEDIRL-GLHRSDYMLDEQTKSLLQIEVNTISSSFSGL 245 (565)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~L-GL~RSDYMld~~~~~lKQVE~NTIS~SFggL 245 (565)
+...++.++..++.+. +.+ |+.|-|++++ ++.+.-+|+||. -+|...
T Consensus 248 ~~~~~i~~~a~~~~~a-----lg~~G~~~vD~~~~--~g~~~vlEiN~r-pg~t~~ 295 (322)
T 2fb9_A 248 GTQETVQELALKAYKV-----LGVRGMARVDFFLA--EGELYLNELNTI-PGFTPT 295 (322)
T ss_dssp THHHHHHHHHHHHHHH-----HTCCSEEEEEEEEE--TTEEEEEEEESS-CCCSSS
T ss_pred HHHHHHHHHHHHHHHH-----hCCceEEEEEEEEE--CCcEEEEEEECC-CCCCcc
Confidence 4445666555555432 222 9999999998 677899999995 445444
No 11
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=22.96 E-value=30 Score=26.26 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=15.6
Q ss_pred HHHHHHhcccCCC-hhhHHHHHHHHHH
Q 008446 178 FLQESLSRTKKVD-PFTSRLLDIHSKM 203 (565)
Q Consensus 178 fL~~~l~~~~~~D-~Ft~~L~~I~~~v 203 (565)
=|+++|.-+.|.| +|..+|.+.|-..
T Consensus 13 Ql~qal~hLiknD~~Fl~~iHeAYl~s 39 (46)
T 2wx4_A 13 QFVQAFTYLIQNDKEFANKLHKAYLNG 39 (46)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3445555555555 7777777777544
No 12
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=22.91 E-value=37 Score=34.24 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeecee
Q 008446 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTIS 239 (565)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS 239 (565)
+-..++-++-.++.+. =..+ |+.|-|+++|. ++.+.-+|+||+.
T Consensus 274 ~~~~~i~~~A~~~~~a---Lg~~-G~~~VDf~~~~-dg~~~vlEvNt~P 317 (357)
T 4fu0_A 274 EAEKRIQEAAVTIYKA---LGCS-GFSRVDMFYTP-SGEIVFNEVNTIP 317 (357)
T ss_dssp HHHHHHHHHHHHHHHH---TTCC-EEEEEEEEECT-TCCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHH---hCCc-ceEEEEEEEeC-CCCEEEEEEeCCC
Confidence 4445555555555322 0122 89999999985 5678899999985
No 13
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=22.70 E-value=69 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=25.2
Q ss_pred HHHHHhhcCccchhhccCCCHHH---HHHHHHhcccc
Q 008446 399 KKIQQELAKPNVLESRFLDNKED---IAKVRKCFAGL 432 (565)
Q Consensus 399 KKVQQ~La~pgvLe~rFl~~~~~---~~~lr~tFa~l 432 (565)
.++|++-++|..+. +++.|++. +.+|...|.|+
T Consensus 25 ~~lq~i~~NP~~~~-~~~~dP~v~~~~~~L~~~~~g~ 60 (62)
T 2lnm_A 25 AALMECSENPMNIM-KYQNDKEVMDVFNKISQLFPGM 60 (62)
T ss_dssp HHHHHHTTCGGGHH-HHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCHHHHH-HHHhChHHHHHHHHHHHHhCCC
Confidence 36788888999998 99999865 56666777664
No 14
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=22.10 E-value=57 Score=32.35 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceeccccc
Q 008446 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSG 244 (565)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS~SFgg 244 (565)
+...++.++..++.+.- .+ -|++|-|+++|. ++.+.-+|+||. .+|..
T Consensus 267 ~~~~~i~~~a~~~~~al---g~-~G~~~vD~~~~~-~g~~~viEiN~r-pg~t~ 314 (343)
T 1e4e_A 267 EERGRIQETVKKIYKTL---GC-RGLARVDMFLQD-NGRIVLNEVNTL-PGFTS 314 (343)
T ss_dssp HHHHHHHHHHHHHHHHT---TC-EEEEEEEEEECT-TCCEEEEEEESS-CCCST
T ss_pred HHHHHHHHHHHHHHHHc---CC-ceEEEEEEEEeC-CCCEEEEEeeCC-CCCCc
Confidence 34456666666654321 12 299999999975 467899999996 34433
No 15
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=20.98 E-value=53 Score=32.76 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeece
Q 008446 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTI 238 (565)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTI 238 (565)
+...++.++-.++.+. =.++ |+.|-|++++.+ +.+.-+|+||.
T Consensus 267 ~~~~~i~~~a~~~~~~---lg~~-G~~~vD~~~~~~-g~~~vlEiN~r 309 (346)
T 3se7_A 267 TSRSLVQDTAKAVYRA---LGCR-GLSRVDLFLTED-GKVVLNEVNTF 309 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HTCC-EEEEEEEEECTT-SCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHH---hCCc-eEEEEEEEEeCC-CCEEEEEEeCC
Confidence 4445566555555432 1223 999999999864 67999999997
No 16
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=20.70 E-value=1e+02 Score=31.32 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=35.3
Q ss_pred CCccccCCCCCCCcccc----chhHHHHHHhccCCCCccc-cceeeccccCCCCcceEEEecCc
Q 008446 449 ELYVMKPQREGGGNNIY----GEDVKETLLRLKKDGTDED-AAYILMQRIFPSVSLTFLMRDGI 507 (565)
Q Consensus 449 ~~yVLKPQREGGGNNiY----GedI~~~L~~l~~~~~~e~-~aYILMerI~Pp~~~n~lvR~g~ 507 (565)
--+|+||-+.|||..++ .+++.+.++.+... .. ..+|+.+.|.-+...-..+++|+
T Consensus 137 ~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~---~~~~~~lvEe~i~g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 137 VPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNR---AEGGEVVVEEYLEGEEATVLALTDGE 197 (417)
T ss_dssp SSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTS---SSCCCEEEEECCCSCEEEEEEEESSS
T ss_pred CCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhh---ccCCeEEEEECccCcEEEEEEEEeCC
Confidence 45899999999987765 35677777766421 11 45667666654444444445554
No 17
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=20.12 E-value=34 Score=26.44 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=14.5
Q ss_pred HHHHHhcccCCC-hhhHHHHHHHHHHH
Q 008446 179 LQESLSRTKKVD-PFTSRLLDIHSKML 204 (565)
Q Consensus 179 L~~~l~~~~~~D-~Ft~~L~~I~~~v~ 204 (565)
|+++|-.+.+.| +|..+|.+.|-...
T Consensus 16 l~qaLihLIqnD~~Fl~~IHeAYl~sl 42 (51)
T 2wx3_A 16 LQDTLIHLIKNDSSFLSTLHEVYLQVL 42 (51)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 344444455555 66677766665543
Done!