Your job contains 1 sequence.
>008447
MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG
SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA
IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYESEEEHVEPKHKEKPVGPPLELE
IPLRPPPADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRW
RTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQS
QGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQN
IRANVLLNRKREKINRKYTQTVERRRQLSTGYLEDALEEDDETDYHDSRRSRRRFEEELE
AEVRAEKRIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFSESEREESEYETDGEEDERS
PLRKRVEGPEQDYEEEEEEEEEEQEEEPDINRASDDEEEAVEPKQKARDSGSNHKRRGIE
SDEDSPPRKMPTHRRMAVVYDSDEE
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008447
(565 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2159466 - symbol:VIP4 "VERNALIZATION INDEPENDE... 1323 4.7e-135 1
UNIPROTKB|Q52KV5 - symbol:leo1 "RNA polymerase-associated... 341 2.7e-33 3
ZFIN|ZDB-GENE-040426-2435 - symbol:leo1 "Leo1, Paf1/RNA p... 308 7.0e-32 3
UNIPROTKB|E1BV70 - symbol:LOC769405 "Uncharacterized prot... 304 1.1e-31 3
UNIPROTKB|Q8WVC0 - symbol:LEO1 "RNA polymerase-associated... 302 1.5e-31 3
UNIPROTKB|F1RZB7 - symbol:LEO1 "Uncharacterized protein" ... 302 4.9e-31 3
MGI|MGI:2685031 - symbol:Leo1 "Leo1, Paf1/RNA polymerase ... 302 4.9e-31 3
RGD|1549772 - symbol:Leo1 "Leo1, Paf1/RNA polymerase II c... 302 7.0e-31 3
UNIPROTKB|Q641X2 - symbol:Leo1 "RNA polymerase-associated... 302 7.0e-31 3
UNIPROTKB|A4FUW5 - symbol:LEO1 "LEO1 protein" species:991... 302 7.3e-31 2
UNIPROTKB|Q5R4D6 - symbol:LEO1 "RNA polymerase-associated... 295 1.9e-30 3
FB|FBgn0019637 - symbol:Atu "Another transcription unit" ... 277 2.2e-24 2
DICTYBASE|DDB_G0286051 - symbol:leo1 "RNA polymerase II c... 288 8.9e-24 2
WB|WBGene00007110 - symbol:B0035.11 species:6239 "Caenorh... 229 1.3e-20 3
SGD|S000005649 - symbol:LEO1 "Component of the Paf1 compl... 235 1.1e-19 2
CGD|CAL0002849 - symbol:orf19.7116 species:5476 "Candida ... 193 1.3e-14 2
POMBASE|SPBC13E7.08c - symbol:SPBC13E7.08c "RNA polymeras... 169 1.8e-10 3
GENEDB_PFALCIPARUM|PFD0207c - symbol:PFD0207c "hypothetic... 137 8.4e-06 1
UNIPROTKB|Q8I1Y6 - symbol:PFD0207c "Putative uncharacteri... 137 8.4e-06 1
ZFIN|ZDB-GENE-070912-423 - symbol:rpgra "retinitis pigmen... 135 1.2e-05 2
UNIPROTKB|B8ZZQ6 - symbol:PTMA "Uncharacterized protein" ... 86 5.9e-05 2
UNIPROTKB|P06454 - symbol:PTMA "Prothymosin alpha" specie... 85 7.5e-05 2
RGD|61829 - symbol:Ptma "prothymosin alpha" species:10116... 83 7.6e-05 2
UNIPROTKB|P01252 - symbol:PTMA "Prothymosin alpha" specie... 84 9.6e-05 2
GENEDB_PFALCIPARUM|PF13_0191 - symbol:PF13_0191 "hypothet... 125 0.00011 1
UNIPROTKB|Q8IDY5 - symbol:PF13_0191 "Uncharacterized prot... 125 0.00011 1
ZFIN|ZDB-GENE-010328-16 - symbol:baz1b "bromodomain adjac... 119 0.00017 2
UNIPROTKB|F1NW81 - symbol:SETD1B "Histone-lysine N-methyl... 132 0.00023 2
UNIPROTKB|Q5F3P8 - symbol:SETD1B "Histone-lysine N-methyl... 132 0.00024 2
UNIPROTKB|F1NKV4 - symbol:SETD1B "Histone-lysine N-methyl... 132 0.00024 2
WB|WBGene00016360 - symbol:C33G8.2 species:6239 "Caenorha... 120 0.00029 1
RGD|2508 - symbol:Dmp1 "dentin matrix acidic phosphoprote... 112 0.00059 2
UNIPROTKB|P98193 - symbol:Dmp1 "Dentin matrix acidic phos... 112 0.00059 2
GENEDB_PFALCIPARUM|PF13_0355 - symbol:PF13_0355 "hypothet... 123 0.00061 1
UNIPROTKB|Q8ID30 - symbol:PF13_0355 "Uncharacterized prot... 123 0.00061 1
UNIPROTKB|I3LV13 - symbol:PTMA "Uncharacterized protein" ... 76 0.00066 2
ZFIN|ZDB-GENE-081104-2 - symbol:tpra "translocated promot... 124 0.00082 1
MGI|MGI:88376 - symbol:Cenpb "centromere protein B" speci... 118 0.00092 1
ZFIN|ZDB-GENE-050506-101 - symbol:paf1 "paf1, RNA polymer... 117 0.00092 1
>TAIR|locus:2159466 [details] [associations]
symbol:VIP4 "VERNALIZATION INDEPENDENCE 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IMP] [GO:0010048 "vernalization response"
evidence=RCA;IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0008284
"positive regulation of cell proliferation" evidence=RCA]
GO:GO:0005829 EMBL:CP002688 EMBL:AB006696 GO:GO:0009910
GO:GO:0010048 KO:K15177 InterPro:IPR007149 Pfam:PF04004 OMA:RHEIDEE
EMBL:BT002058 EMBL:BT008386 IPI:IPI00543146 RefSeq:NP_851237.1
UniGene:At.29120 IntAct:Q9FNQ0 STRING:Q9FNQ0 PRIDE:Q9FNQ0
EnsemblPlants:AT5G61150.1 GeneID:836236 KEGG:ath:AT5G61150
TAIR:At5g61150 InParanoid:Q9FNQ0 PhylomeDB:Q9FNQ0
ProtClustDB:CLSN2680583 ArrayExpress:Q9FNQ0 Genevestigator:Q9FNQ0
Uniprot:Q9FNQ0
Length = 625
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 300/573 (52%), Positives = 363/573 (63%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEE-YGQRVATSRRREVIESGS 61
D E DPG+SEGER+QSSQE D +EESEA+ +DSD KEE +G RVA RR+EV+ESGS
Sbjct: 72 DVELDPGESEGEREQSSQEAD---PQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGS 128
Query: 62 ERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAI 121
ERS E HY + EDEEVDQ RSP RSP EEK++ ++ S IR+VFG SD+ED EY +
Sbjct: 129 ERSGEKHY-ESEDEEVDQTRSP-RSPS-EEKEEVQVAQSDVNIRNVFGSSDDEDAEEY-V 184
Query: 122 RNDIDQDSNRSPMEEEGSYEKSIRPED-----IVPDEDMHYESXXXXXXXXXXXXXXGXX 176
RND++QD +RSP+E+E EK +RP+D I+P+ED YES G
Sbjct: 185 RNDVEQDEHRSPIEDEEGSEKDLRPDDMVLDDIIPEEDPQYESEAEHVEARYRERPVGPP 244
Query: 177 XXXXXXXXXXXADPTKMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENN 236
DP KMNMIKVSNIMGIDPKPFD KT+VEEDTF+TDE GAK RIRL+NN
Sbjct: 245 LEVEVPFRPPPGDPVKMNMIKVSNIMGIDPKPFDAKTFVEEDTFMTDEPGAKNRIRLDNN 304
Query: 237 IVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKG 296
IVR R VK++DG T ESNARFVRWSDGSLQL IGNEVL+IT QDA+ DQ HLF++H KG
Sbjct: 305 IVRHRFVKSRDGKTYSESNARFVRWSDGSLQLLIGNEVLNITEQDAKEDQNHLFIKHEKG 364
Query: 297 ILQSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXX 356
ILQSQGRILKKMRF PSSL+SNSHRLLTA+V+SR KK +KVKNC+TDIDP
Sbjct: 365 ILQSQGRILKKMRFTPSSLTSNSHRLLTAIVESRQKKAFKVKNCVTDIDPEREKEKREKA 424
Query: 357 XSQNIRANVLLNRKREKINRKYTQTVERRRQLSTGYXXXXXXXXXXXXYHDSXXXXXXXX 416
SQN++A+ L++ REKI RKY VERR QLSTGY Y +
Sbjct: 425 ESQNLKASTKLSQAREKIKRKYPLPVERR-QLSTGYLEDALDEDDED-YRSNRGYEEDLE 482
Query: 417 XXXXXXXXXXXXIINAKKPQGHRDIPRKSSTLPAAKSSRRPVDFXXXXXXXXXXXXXXXX 476
I+NAKK H+ IP +SS + +A+ SRR +++
Sbjct: 483 AEAQRERR----ILNAKK--SHKGIPGRSS-MTSARPSRRQMEYSESEREESEYETEEEE 535
Query: 477 XXXXPLRKRVEGPEQDYXXXXXXXXXXXXXXPDINRASDD--EEEAVEPKQKARDS-GSN 533
P R R + E +Y NR SD+ EEE V + +D GS
Sbjct: 536 EEKSPARGRGKDSEDEYEEDAEEDEEERGKS---NRYSDEDEEEEEVAGGRAEKDHRGSG 592
Query: 534 HKRRGIESDED-SPPRKMPTHRRMAVVYDSDEE 565
KR+GIESDE+ SPPRK PTHRR AV+ DSDE+
Sbjct: 593 RKRKGIESDEEESPPRKAPTHRRKAVIDDSDED 625
>UNIPROTKB|Q52KV5 [details] [associations]
symbol:leo1 "RNA polymerase-associated protein LEO1"
species:8355 "Xenopus laevis" [GO:0016593 "Cdc73/Paf1 complex"
evidence=ISS] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] GO:GO:0045944 GO:GO:0006351
KO:K15177 InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968
GO:GO:0016593 CTD:123169 HOVERGEN:HBG081913 EMBL:BC094174
RefSeq:NP_001085280.1 UniGene:Xl.52848 GeneID:443607
KEGG:xla:443607 Xenbase:XB-GENE-5828312 Uniprot:Q52KV5
Length = 703
Score = 341 (125.1 bits), Expect = 5.7e-32, Sum P(2) = 5.7e-32
Identities = 97/383 (25%), Positives = 171/383 (44%)
Query: 2 HDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGS 61
+D G+ + R +E ++ +E E + +D DE++ + R+ + +
Sbjct: 229 NDRPHSDGEEQDHRQSEDEENELQHSDDEQERQRSD-DERQRSDDEINEHRQSD--DEDR 285
Query: 62 ERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAI 121
+ S+ ++ H D+E ++ S S EE + + A D+ D DE + A
Sbjct: 286 QHSDGDNVRHHSDDE-HKSESQKGSDSEEEIGRQRRKKAIASDSDLDSDDDEPKAKQNA- 343
Query: 122 RNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYESXXXXXXXXXXXXXXGXXXXXXX 181
+D+ D++ +G +K P + D+ M +
Sbjct: 344 -SDLFGDADDISSGSDGE-DKPPTPGQPMDDDGMDQDQPEETAPETRIEVEIPKVNTDLG 401
Query: 182 XXXXXXADPTKMNMIKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIV 238
+ +K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +
Sbjct: 402 ---------NDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTI 451
Query: 239 RWRTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGIL 298
RWRT K+++G +SNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G L
Sbjct: 452 RWRTRKDEEGNDVRDSNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-L 510
Query: 299 QSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXX 357
Q Q K+ F P S S +HR +T + R K K++ + DP
Sbjct: 511 QGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRSEMIKKE 570
Query: 358 SQNIRANVLLNRKREKINRKYTQ 380
+ +RA++ ++ ++ K Q
Sbjct: 571 EERLRASIRRESQQRRMREKQHQ 593
Score = 310 (114.2 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 71/201 (35%), Positives = 110/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWRT K+++G
Sbjct: 407 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRTRKDEEGNDVR 465
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
+SNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 466 DSNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 524
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 525 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRSEMIKKEEERLRASI----RR 580
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 581 ESQQRRMREK-QHQRGLSANY 600
Score = 109 (43.4 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 43/159 (27%), Positives = 67/159 (42%)
Query: 4 AEPDPGQSEGERDQSSQ-EVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
+E D + D D DQ +E E K +SD++ ++ R + E + S
Sbjct: 134 SEADGSDKDANSDDEKWGREDKSDQSDEEE-KMQNSDDELQHSDRDEHRQSDEEGQRPSS 192
Query: 63 RSEENHYPDHEDEEVDQARSPS-RSPGGEEKDQTHIS---HSAAEIRDVFGDSDEEDVGE 118
+EE +DEE D S + EE DQ H + HS E +D DEE+ +
Sbjct: 193 DAEEQETHQSDDEEQDNHHSDDLHNSDDEENDQQHYNDRPHSDGEEQDHRQSEDEENELQ 252
Query: 119 YAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHY 157
++ D +Q+ RS E + S + I DED +
Sbjct: 253 HS---DDEQERQRSDDERQRS-DDEINEHRQSDDEDRQH 287
Score = 92 (37.4 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 36/144 (25%), Positives = 65/144 (45%)
Query: 16 DQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVA-TSRRREVIESGSERSEENHYPDHED 74
DQ + +Q SEA + D D E+ GQR +S R E S + + ++ ED
Sbjct: 96 DQEVNDQSDAEQHSGSEALH-DEDNDEDVGQRSDHSSPRSEADGSDKDANSDDEKWGRED 154
Query: 75 EEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDSNRSPM 134
+ DQ+ + +++ + HS RD SDEE G+ + +Q++++S
Sbjct: 155 KS-DQSDEEEKMQNSDDE----LQHSD---RDEHRQSDEE--GQRPSSDAEEQETHQSDD 204
Query: 135 EEEGSYEKS-IRPEDIVPDEDMHY 157
EE+ ++ + D ++ HY
Sbjct: 205 EEQDNHHSDDLHNSDDEENDQQHY 228
Score = 83 (34.3 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 34/162 (20%), Positives = 65/162 (40%)
Query: 3 DAEP-DPGQSEGERDQSSQEVDV--VDQREESEAKYTDS--DEKEEYGQRVATSRRREVI 57
DAE + QS+ E + D+ D E + Y D + EE R + E+
Sbjct: 193 DAEEQETHQSDDEEQDNHHSDDLHNSDDEENDQQHYNDRPHSDGEEQDHRQSEDEENELQ 252
Query: 58 ESGSERSEENHYPDHE--DEEVDQARSPSRSPGGEEKDQTHISHSAAE---IRDVFGDSD 112
S E+ + + + D+E+++ R S + D ++ H + + G
Sbjct: 253 HSDDEQERQRSDDERQRSDDEINEHRQ-SDDEDRQHSDGDNVRHHSDDEHKSESQKGSDS 311
Query: 113 EEDVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDED 154
EE++G + I DS+ ++E +++ D+ D D
Sbjct: 312 EEEIGRQRRKKAIASDSDLDSDDDEPKAKQNA--SDLFGDAD 351
Score = 78 (32.5 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 42/161 (26%), Positives = 69/161 (42%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEE--YGQRVATSRRREVIE-S 59
D++ D S++E+ D +E ++++ S + E Y +EV + S
Sbjct: 44 DSDRDEDDEHSAVKPSNKELFGDDSEDEVGSQHSGSYNRSERSYNASETAHSDQEVNDQS 103
Query: 60 GSER---SEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDV 116
+E+ SE H D+ DE+V Q RS SP E ++S E SD+ D
Sbjct: 104 DAEQHSGSEALHDEDN-DEDVGQ-RSDHSSPRSEADGSDKDANSDDEKWGREDKSDQSDE 161
Query: 117 GEYAIRNDID-QDSNRSPMEEEGSYEKSIRPEDIVPDEDMH 156
E +D + Q S+R E S E+ RP +++ H
Sbjct: 162 EEKMQNSDDELQHSDRD--EHRQSDEEGQRPSSDAEEQETH 200
Score = 77 (32.2 bits), Expect = 5.5e-30, Sum P(3) = 5.5e-30
Identities = 35/162 (21%), Positives = 57/162 (35%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQR---EESEAKYTDSDEKEEYGQRVATSRRREVIES 59
D+EP S R S + D D+ + S + D ++E G + + S R
Sbjct: 28 DSEPGNDGSGSNRSGSDSDRDEDDEHSAVKPSNKELFGDDSEDEVGSQHSGSYNR----- 82
Query: 60 GSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEY 119
SERS H D+EV+ + G E + D E D +
Sbjct: 83 -SERSYNASETAHSDQEVNDQSDAEQHSGSEALHDEDNDEDVGQRSDHSSPRSEADGSDK 141
Query: 120 AIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVP--DEDMHYES 159
+D ++ ++ EK +D + D D H +S
Sbjct: 142 DANSDDEKWGREDKSDQSDEEEKMQNSDDELQHSDRDEHRQS 183
Score = 72 (30.4 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 31/130 (23%), Positives = 53/130 (40%)
Query: 7 DPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEE 66
D +RD+ Q D QR S+A+ ++ + ++ Q ++ S E +++
Sbjct: 169 DDELQHSDRDEHRQS-DEEGQRPSSDAEEQETHQSDDEEQD--NHHSDDLHNSDDEENDQ 225
Query: 67 NHYPD--HED-EEVDQARSPSRSPGGEEKDQTHISHSAAEIR-DVFGDSDEEDVGEYAIR 122
HY D H D EE D +S EE + H R D ++++ E+ R
Sbjct: 226 QHYNDRPHSDGEEQDHRQSED-----EENELQHSDDEQERQRSDDERQRSDDEINEH--R 278
Query: 123 NDIDQDSNRS 132
D+D S
Sbjct: 279 QSDDEDRQHS 288
Score = 41 (19.5 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 515 DDEEEAVEPKQ----KARDSGSNHKRRGIES-------DEDSPPRKMPTHRRMAVVYDSD 563
DDEEE E K R G +R I S DED R + + + D D
Sbjct: 607 DDEEEGDESISLAAIKNRYKGGREERARIYSSDSDEGSDEDKAQRLLKAKKLNSDEEDQD 666
Query: 564 EE 565
EE
Sbjct: 667 EE 668
>ZFIN|ZDB-GENE-040426-2435 [details] [associations]
symbol:leo1 "Leo1, Paf1/RNA polymerase II complex
component, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0003674 "molecular_function" evidence=ND] [GO:0050936
"xanthophore differentiation" evidence=IMP] [GO:0014032 "neural
crest cell development" evidence=IMP] [GO:0007507 "heart
development" evidence=IMP] [GO:0048701 "embryonic cranial skeleton
morphogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0030318 "melanocyte differentiation"
evidence=IMP] [GO:0021782 "glial cell development" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] [GO:0021529 "spinal cord oligodendrocyte cell
differentiation" evidence=IMP] ZFIN:ZDB-GENE-040426-2435
GO:GO:0007507 GO:GO:0045944 GO:GO:0006351 GO:GO:0014032
GO:GO:0048701 GO:GO:0030318 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0016593 GO:GO:0050936
GO:GO:0021782 EMBL:CR848839 EMBL:BC066443 IPI:IPI00508736
RefSeq:NP_996950.1 UniGene:Dr.79820 IntAct:Q6NYV9 STRING:Q6NYV9
PRIDE:Q6NYV9 Ensembl:ENSDART00000077694 GeneID:404599
KEGG:dre:404599 CTD:123169 HOGENOM:HOG000253934 HOVERGEN:HBG081913
InParanoid:Q6NYV9 OMA:RHEIDEE OrthoDB:EOG4HQDJC NextBio:20817668
Bgee:Q6NYV9 GO:GO:0021529 Uniprot:Q6NYV9
Length = 696
Score = 308 (113.5 bits), Expect = 7.0e-32, Sum P(3) = 7.0e-32
Identities = 70/201 (34%), Positives = 111/201 (55%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR+ ++++G
Sbjct: 354 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRSRRDEEGNEVK 412
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 413 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 471
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 472 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRNEMIKKEEERLRASI----RR 527
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R L+ GY
Sbjct: 528 ESQQRRMREK-QHQRGLNAGY 547
Score = 82 (33.9 bits), Expect = 7.0e-32, Sum P(3) = 7.0e-32
Identities = 24/107 (22%), Positives = 43/107 (40%)
Query: 7 DPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEE 66
DPG + + S ++ D++ + K +D E E+ Q R R E ++SE
Sbjct: 193 DPGTPHTDGEGSGKDAHSGDEKWGGDGK-SDQSEDEDKQQNSDDERERSDEEGERQKSES 251
Query: 67 NHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDE 113
D ED+ + + S + D D+FG++D+
Sbjct: 252 IKGSDSEDDFTRKKKKKIASDSDSDSDAETQGGKKPAANDLFGEADD 298
Score = 80 (33.2 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 29/118 (24%), Positives = 48/118 (40%)
Query: 11 SEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYP 70
++ +RD E + D + S + D ++E+G + + S+ SGS S H
Sbjct: 46 AQSDRDHDDDEDE--DGGKPSNKELFGDDSEDEHGSQHSGSQHSGSRHSGSRHSGSRHSG 103
Query: 71 DHEDEEVDQARSPSRSPGGEEKDQTHIS---HSAAEIRDVFGDSDEEDVGEYAIRNDI 125
RS G + D T S HS +E G+ D+ED + R+D+
Sbjct: 104 SRHSGSQHSGSQSERS--GNQSDATMHSDNEHSMSEAHR--GEQDDEDDDDRGHRSDV 157
Score = 70 (29.7 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 33/145 (22%), Positives = 54/145 (37%)
Query: 2 HDAEPDPG-QSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
H G QSE +QS + ++ SEA + D++++ + + +G
Sbjct: 106 HSGSQHSGSQSERSGNQSDATMHSDNEHSMSEAHRGEQDDEDDDDRGHRSDVGSPASGAG 165
Query: 61 SERSEENH-YPDHE-DEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGE 118
S RS+ P E +A S PG D A + +G + D E
Sbjct: 166 SRRSDRGSGSPGSEAGSPRSEAGSGHSDPGTPHTDGEGSGKDAHSGDEKWGGDGKSDQSE 225
Query: 119 YAIRNDIDQDSNRSPMEEEGSYEKS 143
+ + D R +EEG +KS
Sbjct: 226 DEDKQQ-NSDDERERSDEEGERQKS 249
Score = 65 (27.9 bits), Expect = 4.1e-30, Sum P(3) = 4.1e-30
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 26 DQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDEEVDQARSPSR 85
+QR+ +DSD + R A++ SGSE ++ + DH+D+E + PS
Sbjct: 17 EQRDSGSGSGSDSDHERP---RSASNA------SGSESAQSDR--DHDDDEDEDGGKPSN 65
Query: 86 SP--GGEEKDQTHISHSAAE 103
G + +D+ HS ++
Sbjct: 66 KELFGDDSEDEHGSQHSGSQ 85
Score = 57 (25.1 bits), Expect = 7.0e-32, Sum P(3) = 7.0e-32
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 509 DINRASDDEEEAVEPKQKARDS---GSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE 565
D + SD+++ K K DS G N +R E DE+S +K P + V+ D ++E
Sbjct: 589 DSDEGSDEDKAQRLMKAKRLDSDEEGENSGKRKAEEDEESASKK-P---KKYVISDEEDE 644
>UNIPROTKB|E1BV70 [details] [associations]
symbol:LOC769405 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001711 "endodermal cell fate commitment"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0010390 "histone
monoubiquitination" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0033523 "histone H2B ubiquitination" evidence=IEA] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0005730 GO:GO:0045944
GO:GO:0006378 GeneTree:ENSGT00550000074952 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0045638 OMA:NNGTMDL
EMBL:AADN02045369 EMBL:AADN02045370 IPI:IPI00586576
RefSeq:XP_001232678.2 Ensembl:ENSGALT00000007481 GeneID:769405
KEGG:gga:769405 Uniprot:E1BV70
Length = 657
Score = 304 (112.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 367 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRMRRDEEGNEIR 425
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 426 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 484
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 485 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRTEMIKKEEERLRASI----RR 540
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 541 ESQQRRMREK-QHQRGLSANY 560
Score = 98 (39.6 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 34/156 (21%), Positives = 66/156 (42%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D E + ER Q S E + + ++ A+++D +EK + ++R + E +
Sbjct: 202 DEEKMQNSDDEERPQVSDEEKMQNSDDDERAQHSD-EEKMQNSDDDERAQRSDEEEQEHK 260
Query: 63 RSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIR 122
E D EDE + R + E T A++ D+FG +D D+ +
Sbjct: 261 SGESARGSDSEDEVLRMKRKKPIASDSEADSDTEGQKEHADVMDLFGGAD--DISSGSDG 318
Query: 123 NDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
D + P++E G ++ + E+ +P+ + E
Sbjct: 319 EDKPPTPGQ-PIDENGLSQEQ-QEEEPIPETRIEVE 352
Score = 95 (38.5 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 36/141 (25%), Positives = 61/141 (43%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVI-ESGS 61
D E + E+ Q+S E D Q + E + +SDE++ Q R +V E
Sbjct: 167 DEERQQNSDDEEKAQNSDE-DERPQMSDDEERLQNSDEEKM--QNSDDEERPQVSDEEKM 223
Query: 62 ERSEENHYPDHEDEE-VDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
+ S+++ H DEE + + R+ +E++Q H S +A G E++V
Sbjct: 224 QNSDDDERAQHSDEEKMQNSDDDERAQRSDEEEQEHKSGESAR-----GSDSEDEVLRMK 278
Query: 121 IRNDIDQDSNRSPMEEEGSYE 141
+ I DS + + EG E
Sbjct: 279 RKKPIASDSE-ADSDTEGQKE 298
Score = 85 (35.0 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 35/156 (22%), Positives = 64/156 (41%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D+E D + E + S++E+ D +E + +T SD E + + E +
Sbjct: 44 DSEQDD-EREAAKP-SNKELFGDDSEDEGASHHTGSDNHSERSYNRSEASGHSEHEDNDQ 101
Query: 63 RSEENHYPD---HEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEY 119
+ H H+DEE ++ E D + +HS E SD+ D E
Sbjct: 102 SDVDQHSASEAAHDDEEDERGHGSDEGSHHSEGDGSEKAHSEDEKWGKEDKSDQSDDEER 161
Query: 120 AIRNDIDQDSNRSPMEEEG-SYEKSIRPEDIVPDED 154
+D ++ S EE+ + ++ RP+ + DE+
Sbjct: 162 QQNSDDEERQQNSDDEEKAQNSDEDERPQ-MSDDEE 196
Score = 83 (34.3 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 30/140 (21%), Positives = 53/140 (37%)
Query: 2 HDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGS 61
H +E D + D+ + D DQ ++ E + DE+ + + +
Sbjct: 130 HHSEGDGSEKAHSEDEKWGKEDKSDQSDDEERQQNSDDEERQQNSDDEEKAQNSDEDERP 189
Query: 62 ERSEENHYPDHEDEEVDQARSPSRSP--GGEEKDQTHISHSAAEIRDVFGDSDEEDVGEY 119
+ S++ + DEE Q P EEK Q A+ D + +D E
Sbjct: 190 QMSDDEERLQNSDEEKMQNSDDEERPQVSDEEKMQNSDDDERAQHSDEEKMQNSDD-DER 248
Query: 120 AIRNDIDQDSNRSPMEEEGS 139
A R+D ++ ++S GS
Sbjct: 249 AQRSDEEEQEHKSGESARGS 268
Score = 81 (33.6 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 35/155 (22%), Positives = 69/155 (44%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
DA+ + Q + + S D + S A +DS++ +E + A +E+ SE
Sbjct: 11 DADSEAEQKDTDSGSDSDS-DQENAGSGSNASGSDSEQDDE--REAAKPSNKELFGDDSE 67
Query: 63 RSEENHYP---DHEDEEVDQARSPSRSPGGEEKDQTHIS-HSAAEIRDVFGDSDEE---- 114
+H+ +H + +++ + S E+ DQ+ + HSA+E D ++E
Sbjct: 68 DEGASHHTGSDNHSERSYNRSEASGHSEH-EDNDQSDVDQHSASEA--AHDDEEDERGHG 124
Query: 115 -DVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPED 148
D G + D + ++ S E+ G +KS + +D
Sbjct: 125 SDEGSHHSEGDGSEKAH-SEDEKWGKEDKSDQSDD 158
Score = 79 (32.9 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 28/126 (22%), Positives = 52/126 (41%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERS 64
E QS+ E Q + + + Q + E K +SDE E R + E + S
Sbjct: 150 EDKSDQSDDEERQQNSDDEERQQNSDDEEKAQNSDEDERPQMSDDEERLQNSDEEKMQNS 209
Query: 65 EENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEED--VGEYAIR 122
++ P DEE + ++ + D+ + +S + R D +E++ GE A
Sbjct: 210 DDEERPQVSDEE--KMQNSDDDERAQHSDEEKMQNSDDDERAQRSDEEEQEHKSGESARG 267
Query: 123 NDIDQD 128
+D + +
Sbjct: 268 SDSEDE 273
Score = 79 (32.9 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 27/134 (20%), Positives = 52/134 (38%)
Query: 10 QSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRR----EVIESGSERSE 65
++ G + + VDQ SEA + D +++ +G + E S E+
Sbjct: 89 EASGHSEHEDNDQSDVDQHSASEAAHDDEEDERGHGSDEGSHHSEGDGSEKAHSEDEKWG 148
Query: 66 ENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDE--EDVGEYAIRN 123
+ D D+E Q S D+ +S + R D +E ++ E ++N
Sbjct: 149 KEDKSDQSDDEERQQNSDDEERQQNSDDEEKAQNSDEDERPQMSDDEERLQNSDEEKMQN 208
Query: 124 DIDQDSNRSPMEEE 137
D++ + EE+
Sbjct: 209 SDDEERPQVSDEEK 222
Score = 78 (32.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 29/153 (18%), Positives = 59/153 (38%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAK----YTDSDEKEEYGQRVATSRRREVIE 58
D++ D + + S + + D+RE ++ + D E E + E
Sbjct: 26 DSDSDQENAGSGSNASGSDSEQDDEREAAKPSNKELFGDDSEDEGASHHTGSDNHSERSY 85
Query: 59 SGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGE 118
+ SE S + + D++ +VDQ + + EE ++ H S + + GD E+ E
Sbjct: 86 NRSEASGHSEHEDNDQSDVDQHSASEAAHDDEEDERGHGSDEGSHHSE--GDGSEKAHSE 143
Query: 119 ---YAIRNDIDQDSNRSPMEEEGSYEKSIRPED 148
+ + DQ + + E+ +D
Sbjct: 144 DEKWGKEDKSDQSDDEERQQNSDDEERQQNSDD 176
Score = 43 (20.2 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 618 KLTSDEEGEPSGKRKAEDDDKASKKHKKYVISDEEE 653
>UNIPROTKB|Q8WVC0 [details] [associations]
symbol:LEO1 "RNA polymerase-associated protein LEO1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IDA] [GO:0033523 "histone H2B ubiquitination"
evidence=IDA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IDA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] [GO:0019827 "stem cell maintenance"
evidence=IDA] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] GO:GO:0005730 GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 eggNOG:NOG130430
KO:K15177 InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0001711 GO:GO:0045638 CTD:123169 HOGENOM:HOG000253934
HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC EMBL:AY302186 EMBL:AK055762
EMBL:BC018147 IPI:IPI00103090 IPI:IPI00154162 RefSeq:NP_620147.1
UniGene:Hs.567662 ProteinModelPortal:Q8WVC0 DIP:DIP-37885N
IntAct:Q8WVC0 STRING:Q8WVC0 PhosphoSite:Q8WVC0 DMDM:74751545
PaxDb:Q8WVC0 PeptideAtlas:Q8WVC0 PRIDE:Q8WVC0
Ensembl:ENST00000299601 Ensembl:ENST00000315141 GeneID:123169
KEGG:hsa:123169 UCSC:uc002abo.3 UCSC:uc010bfd.3
GeneCards:GC15M052230 HGNC:HGNC:30401 HPA:HPA040741 HPA:HPA040941
MIM:610507 neXtProt:NX_Q8WVC0 PharmGKB:PA142671558
InParanoid:Q8WVC0 OMA:NNGTMDL PhylomeDB:Q8WVC0 ChiTaRS:LEO1
GenomeRNAi:123169 NextBio:81081 ArrayExpress:Q8WVC0 Bgee:Q8WVC0
CleanEx:HS_LEO1 Genevestigator:Q8WVC0 GermOnline:ENSG00000166477
Uniprot:Q8WVC0
Length = 666
Score = 302 (111.4 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 376 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRIRRDEEGNEIK 434
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 435 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 493
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 494 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 549
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 550 ESQQRRMREK-QHQRGLSASY 569
Score = 100 (40.3 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 45/166 (27%), Positives = 73/166 (43%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREES-----EAKYTDSDEKEEYGQRVATSRRREVI 57
D++ D + + S E D D+R +S + + D E E + E
Sbjct: 26 DSDSDQENAASGSNASGSESDQ-DERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERS 84
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHIS-----HSAAEIRDVFGDSD 112
++ SE SE + + D++ +VDQ S S +P +E D+ H S HS AE + SD
Sbjct: 85 DNRSEASERSDHEDNDPSDVDQ-HSGSEAPNDDE-DEGHRSDGGSHHSEAEGSEK-AHSD 141
Query: 113 EEDVGEYAIRNDIDQDSNRSPMEEE---GSYEKSIRPEDIVPDEDM 155
+E G + D + ++ +EE GS E ++ D DE M
Sbjct: 142 DEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD--DDEKM 185
Score = 88 (36.0 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 34/118 (28%), Positives = 49/118 (41%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATSRRREVIESG 60
D E P S+ ER Q S+E E A D DEK+ ++ S ++ S
Sbjct: 189 DDEERPQLSDDERQQLSEEEKANSDDERPVASDND-DEKQNSDDEEQPQLSDEEKMQNSD 247
Query: 61 SER---SEENHYPDHEDEEVDQARSPSRSPGGEEKDQT-HISHSAAEIRDVFGDSDEE 114
ER S+E H H D+E +Q + G + +D+ + A D DSD E
Sbjct: 248 DERPQASDEEHR--HSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTE 303
Score = 85 (35.0 bits), Expect = 5.3e-30, Sum P(3) = 5.3e-30
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGE-EKDQTHISHSAAEIRDVFGDSDEEDV 116
+S +ER + + D D + + A S S + G E ++D+ S + +++FGD D ED
Sbjct: 13 DSEAERKDSDSGSD-SDSDQENAASGSNASGSESDQDERGDSGQPSN-KELFGD-DSEDE 69
Query: 117 GEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMH 156
G + + D S RS E S E+S ++ D D H
Sbjct: 70 GA-SHHSGSDNHSERSDNRSEAS-ERSDHEDNDPSDVDQH 107
Score = 82 (33.9 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 33/151 (21%), Positives = 63/151 (41%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D+E + S+ D S + + S ++ +D DE+ + GQ +E+ SE
Sbjct: 13 DSEAERKDSDSGSDSDSDQENAASGSNASGSE-SDQDERGDSGQ----PSNKELFGDDSE 67
Query: 63 RSEENHYP--DHEDEEVDQARSPSRSPGGEEKDQTHIS-HSAAEIRDVFGDSDEEDVGEY 119
+H+ D+ E D S E+ D + + HS +E + D DE +
Sbjct: 68 DEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPN--DDEDEGHRSDG 125
Query: 120 AIRNDIDQDSNRSPMEEE--GSYEKSIRPED 148
+ + S ++ ++E G +KS + +D
Sbjct: 126 GSHHSEAEGSEKAHSDDEKWGREDKSDQSDD 156
Score = 80 (33.2 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 34/161 (21%), Positives = 63/161 (39%)
Query: 4 AEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATS----RRREVI 57
+E + S+ ER +S D ++ E +EK + +R S R +
Sbjct: 205 SEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDE 264
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
E +SE D EDE + R + + E T + + D+FG +D D+
Sbjct: 265 EEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMDLFGGAD--DIS 322
Query: 118 EYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
+ D + P++E G + + E+ +P+ + E
Sbjct: 323 SGSDGEDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 361
Score = 72 (30.4 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 30/134 (22%), Positives = 57/134 (42%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEK-----EEYGQRVATSRRREVIES 59
E QS+ E+ Q+S + + +E + + +D DEK +E +++ R+++ E
Sbjct: 148 EDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEE 207
Query: 60 GSERSEENH--YPDHEDEEV--DQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEED 115
S++ D++DE+ D P S EEK Q + SD+E+
Sbjct: 208 EKANSDDERPVASDNDDEKQNSDDEEQPQLSD--EEKMQNSDDERPQASDEEHRHSDDEE 265
Query: 116 VGEYAIRNDIDQDS 129
++ + DS
Sbjct: 266 EQDHKSESARGSDS 279
Score = 60 (26.2 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 23 DVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDEEVDQARS 82
D+ +SEA+ DSD + + +E SGS S +DE D +
Sbjct: 6 DLFGSDADSEAERKDSDSGSD------SDSDQENAASGSNASGSE---SDQDERGDSGQP 56
Query: 83 PSRSPGGEEKDQTHISHSA-----AEIRDVFGDSDEEDVGEYAIRNDIDQDS-NRSPMEE 136
++ G++ + SH + +E D ++ E E +D+DQ S + +P ++
Sbjct: 57 SNKELFGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDD 116
Query: 137 EGSYEKS 143
E +S
Sbjct: 117 EDEGHRS 123
Score = 43 (20.2 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 627 KLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDEEE 662
>UNIPROTKB|F1RZB7 [details] [associations]
symbol:LEO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0033523 "histone H2B ubiquitination" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0031442 "positive
regulation of mRNA 3'-end processing" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001711 "endodermal cell
fate commitment" evidence=IEA] GO:GO:0005730 GO:GO:0045944
GO:GO:0006378 GO:GO:0019827 GeneTree:ENSGT00550000074952 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0001711
GO:GO:0045638 CTD:123169 OMA:NNGTMDL EMBL:CU855739
RefSeq:XP_003121552.1 UniGene:Ssc.7240 Ensembl:ENSSSCT00000005108
GeneID:100518760 KEGG:ssc:100518760 Uniprot:F1RZB7
Length = 666
Score = 302 (111.4 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 376 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRIRRDEEGNEIK 434
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 435 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 493
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 494 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 549
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 550 ESQQRRMREK-QHQRGLSASY 569
Score = 95 (38.5 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
Identities = 34/118 (28%), Positives = 52/118 (44%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATSRRREVIESG 60
D E P S+ ER Q S+E + + +E A + DEK+ +R S ++ S
Sbjct: 189 DDEERPQLSDDERQQLSEE-EKANSDDEQPAASDNDDEKQNSDDEERPQMSDEEKMQNSD 247
Query: 61 SER---SEENHYPDHEDEEVDQARSPSRSPGGEEKDQT-HISHSAAEIRDVFGDSDEE 114
ER S+E H ++EE D +R G + +D+ + A D DSD E
Sbjct: 248 DERPQGSDEEHRHSEDEEEQDHKSESAR--GSDSEDEVLRMKRKNAIASDSEADSDTE 303
Score = 87 (35.7 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 39/160 (24%), Positives = 68/160 (42%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D E S +S Q+ + ++ + D E E + E ++ SE
Sbjct: 30 DQENVASGSNASGSESDQDERDDSGKPSNKELFGDDSEDEGASHHSGSDNHSERSDNRSE 89
Query: 63 RSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGD----SDEEDVG- 117
SE + + D++ +VDQ S S + +E D+ H S + +V G SD+E G
Sbjct: 90 VSERSDHEDNDPSDVDQ-HSGSEAHNDDE-DEGHRSDGGSHHSEVEGSEKAHSDDEKWGG 147
Query: 118 -EYAIRNDIDQDSNRSPMEE-EGSYEKSIRPEDIVPDEDM 155
+ + ++D ++ N E +GS E ++ D DE M
Sbjct: 148 EDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD--DDEKM 185
Score = 84 (34.6 bits), Expect = 6.7e-30, Sum P(3) = 6.7e-30
Identities = 35/156 (22%), Positives = 61/156 (39%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D +P ++ E+ S E Q + E K +SD++ G R E E
Sbjct: 214 DEQPAASDNDDEKQNSDDEER--PQMSDEE-KMQNSDDERPQGSD-EEHRHSEDEEEQDH 269
Query: 63 RSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIR 122
+SE D EDE + R + + E T + D+FG +D D+ +
Sbjct: 270 KSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNNGTMDLFGGAD--DISSGSDG 327
Query: 123 NDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
D + P++E G + + E+ +P+ + E
Sbjct: 328 EDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 361
Score = 79 (32.9 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 57 IESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEI-RDVFGDSDEED 115
++S +ER + + + + ++ + A + S G E DQ S +++FGD D ED
Sbjct: 12 VDSDAERKDSDSGSESDSDQENVASGSNAS--GSESDQDERDDSGKPSNKELFGD-DSED 68
Query: 116 VGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMH 156
G + + D S RS E S E+S ++ D D H
Sbjct: 69 EGA-SHHSGSDNHSERSDNRSEVS-ERSDHEDNDPSDVDQH 107
Score = 74 (31.1 bits), Expect = 7.3e-29, Sum P(3) = 7.3e-29
Identities = 29/144 (20%), Positives = 64/144 (44%)
Query: 16 DQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDE 75
D +VD +R++S++ ++SD +E VA+ ES + +++ P +++
Sbjct: 6 DLFGSDVDSDAERKDSDSG-SESDSDQE---NVASGSNASGSESDQDERDDSGKPSNKEL 61
Query: 76 EVDQARSPSRSPGGEEKDQTHISHSAAEI--RDVFGDSDEEDVGEYA---IRNDIDQDSN 130
D + S + + S + +E+ R D+D DV +++ ND + + +
Sbjct: 62 FGDDSEDEGASHHSGSDNHSERSDNRSEVSERSDHEDNDPSDVDQHSGSEAHNDDEDEGH 121
Query: 131 RSPMEEEGSYEKSIRPEDIVPDED 154
RS + GS+ + + +D
Sbjct: 122 RS---DGGSHHSEVEGSEKAHSDD 142
Score = 71 (30.1 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 32/145 (22%), Positives = 60/145 (41%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERS 64
E QS+ E+ Q+S + + +E + + +D DEK Q R ++ + ++
Sbjct: 148 EDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKM---QNTDDEERPQLSDDERQQL 204
Query: 65 EENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRND 124
E + +DE+ P+ S +EK +S E R D ++ +
Sbjct: 205 SEEEKANSDDEQ------PAASDNDDEKQ-----NSDDEERPQMSDEEKMQNSDDERPQG 253
Query: 125 IDQDSNRSPMEEEGSYE-KSIRPED 148
D++ S EEE ++ +S R D
Sbjct: 254 SDEEHRHSEDEEEQDHKSESARGSD 278
Score = 43 (20.2 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 627 KLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDEEE 662
>MGI|MGI:2685031 [details] [associations]
symbol:Leo1 "Leo1, Paf1/RNA polymerase II complex component,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0001711
"endodermal cell fate commitment" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0010390 "histone monoubiquitination" evidence=ISO] [GO:0016055
"Wnt receptor signaling pathway" evidence=IEA] [GO:0016593
"Cdc73/Paf1 complex" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO;IMP] [GO:0031442 "positive regulation of
mRNA 3'-end processing" evidence=ISO] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0033523 "histone H2B ubiquitination"
evidence=ISO] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
MGI:MGI:2685031 GO:GO:0005730 GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0033523 GO:GO:0010390
GO:GO:0031442 GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOGENOM:HOG000253934 HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC
OMA:NNGTMDL EMBL:AC115880 EMBL:BC082540 EMBL:BC083358
IPI:IPI00474486 IPI:IPI00776281 RefSeq:NP_001034611.1
UniGene:Mm.41508 ProteinModelPortal:Q5XJE5 IntAct:Q5XJE5
STRING:Q5XJE5 PhosphoSite:Q5XJE5 PaxDb:Q5XJE5 PRIDE:Q5XJE5
Ensembl:ENSMUST00000048937 GeneID:235497 KEGG:mmu:235497
UCSC:uc009qsh.1 InParanoid:Q5XJE5 NextBio:382712 Bgee:Q5XJE5
Genevestigator:Q5XJE5 GermOnline:ENSMUSG00000042487 Uniprot:Q5XJE5
Length = 667
Score = 302 (111.4 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 377 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRIRRDEEGNEIK 435
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 436 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 494
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 495 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 550
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 551 ESQQRRMREK-QHQRGLSASY 570
Score = 95 (38.5 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
Identities = 45/179 (25%), Positives = 71/179 (39%)
Query: 2 HDAEPDPGQSEGER-DQSSQEVDVVDQREESEAKYTDSDE--KEEYGQRVATSRRREVIE 58
H D ER D E DQ SEA D DE + + G R + + E +
Sbjct: 80 HSERSDNRSEASERSDHEDNEPSDEDQHSGSEAHNDDDDEGHRSDEGSRHSEAEGSEKAQ 139
Query: 59 SGSERSE-ENHYPDHEDEEVDQARSPSRSPGGEEK-------DQTHISHSAAEIRDVFGD 110
S E+ + E+ +DE++ + R G +E D+ + ++ E R D
Sbjct: 140 SDDEKWDGEDKSDQSDDEKLQNSDDEDREQGSDEDKLQNSDDDEEKMQNTDDEDRAQISD 199
Query: 111 SD-----EEDVG----EYAIRNDIDQDSNRSPMEEE---GSYEKSIRPEDIVP---DED 154
D EE+ G E+ + +D D++ S E++ EK +D P DED
Sbjct: 200 DDRQQLSEEEKGNSDDEHPVASDNDEEKQNSDDEDQPQVSDEEKMQNSDDERPQVSDED 258
Score = 93 (37.8 bits), Expect = 7.9e-31, Sum P(3) = 7.9e-31
Identities = 36/148 (24%), Positives = 64/148 (43%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D E QS+ E+ Q+S + D ++ E K +SD+ EE Q R ++ + +
Sbjct: 146 DGEDKSDQSDDEKLQNSDDED--REQGSDEDKLQNSDDDEEKMQNTDDEDRAQISDDDRQ 203
Query: 63 RSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIR 122
+ E + +DE + + +++DQ +S + +SD+E R
Sbjct: 204 QLSEEEKGNSDDEHPVASDNDEEKQNSDDEDQPQVSDE-----EKMQNSDDE-------R 251
Query: 123 NDI-DQDSNRSPMEEEGSYE-KSIRPED 148
+ D+D RS EEE + +S R D
Sbjct: 252 PQVSDEDGRRSDGEEEQDQKSESARGSD 279
Score = 88 (36.0 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 45/168 (26%), Positives = 64/168 (38%)
Query: 3 DAEPDPGQSEGERDQS-SQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGS 61
D++ D G S S S + D D + S + D +EE + S E
Sbjct: 28 DSDQDNGASGSNASGSESDQDDRGDSGQPSNKELFGDDSEEEGASHHSGSDNHS--ERSD 85
Query: 62 ERSEENHYPDHEDEEV-DQARSPSRSPGGEEKDQTHIS-----HSAAEIRDVFGDSDEED 115
RSE + DHED E D+ + ++ D+ H S HS AE + DE+
Sbjct: 86 NRSEASERSDHEDNEPSDEDQHSGSEAHNDDDDEGHRSDEGSRHSEAEGSEKAQSDDEKW 145
Query: 116 VGEYAIRNDIDQDSNRSPME--EEGSYEKSIRPEDI-------VPDED 154
GE D+ S E E+GS E ++ D DED
Sbjct: 146 DGEDKSDQSDDEKLQNSDDEDREQGSDEDKLQNSDDDEEKMQNTDDED 193
Score = 86 (35.3 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 41/164 (25%), Positives = 69/164 (42%)
Query: 4 AEPDPGQSEGER------DQSSQEVDVVDQREES-EAKYTDSD-EKEEYGQRVATSRRRE 55
+E + G S+ E D+ Q D DQ + S E K +SD E+ + RR +
Sbjct: 206 SEEEKGNSDDEHPVASDNDEEKQNSDDEDQPQVSDEEKMQNSDDERPQVSDE--DGRRSD 263
Query: 56 VIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQ-THISHSAAEIRDVFGDSDEE 114
E ++SE D EDE V + + + P E D T + D+FG +D
Sbjct: 264 GEEEQDQKSESARGSDSEDE-VLRLKRKNAIPSDSEADSDTEVPKDNNGTMDLFGGAD-- 320
Query: 115 DVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
D+ + D + P++E G + + E+ +P+ + E
Sbjct: 321 DISSGSDGEDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 362
Score = 80 (33.2 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 40/162 (24%), Positives = 61/162 (37%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREE----SEAKYTDSDEKEEYGQRVATSRRREV 56
M D +SE ER S E D ++ S A ++SD+ ++ G S + E+
Sbjct: 4 MEDLFGSEAESEAERKDSESESDSDSDQDNGASGSNASGSESDQ-DDRGDSGQPSNK-EL 61
Query: 57 IESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDV 116
SE +H H + RS +RS E D H E SDE+
Sbjct: 62 FGDDSEEEGASH---HSGSDNHSERSDNRSEASERSD-----HEDNE------PSDEDQH 107
Query: 117 GEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
ND D + +RS +EGS + +D ++
Sbjct: 108 SGSEAHNDDDDEGHRS---DEGSRHSEAEGSEKAQSDDEKWD 146
Score = 79 (32.9 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 35/159 (22%), Positives = 70/159 (44%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
+ +++ D + + D+ ++ D+++ SE + +SD++ ++ E
Sbjct: 176 LQNSDDDEEKMQNTDDEDRAQISDDDRQQLSEEEKGNSDDEHPVASDNDEEKQNSDDEDQ 235
Query: 61 SERSEENHYPDHEDEEVDQARSPSR-SPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG-- 117
+ S+E + +DE + R S G EE+DQ S SA DS++E +
Sbjct: 236 PQVSDEEKMQNSDDERPQVSDEDGRRSDGEEEQDQK--SESARG-----SDSEDEVLRLK 288
Query: 118 -EYAIRNDIDQDSNRS-PMEEEGSYEKSIRPEDIVPDED 154
+ AI +D + DS+ P + G+ + +DI D
Sbjct: 289 RKNAIPSDSEADSDTEVPKDNNGTMDLFGGADDISSGSD 327
Score = 46 (21.3 bits), Expect = 5.8e-26, Sum P(3) = 5.8e-26
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 102 AEIRDVFGDSDEEDV----GEYAIRNDIDQDSNRSPMEEEGS 139
A++ D+FG E + E +D DQD+ S GS
Sbjct: 2 ADMEDLFGSEAESEAERKDSESESDSDSDQDNGASGSNASGS 43
Score = 43 (20.2 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 628 KLNSDEEGESSGKRKAEDDDKANKKHKKYVISDEEE 663
>RGD|1549772 [details] [associations]
symbol:Leo1 "Leo1, Paf1/RNA polymerase II complex component,
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0001711 "endodermal cell fate commitment" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA;ISO;ISS] [GO:0010390 "histone monoubiquitination"
evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA;ISO;ISS] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO;ISS] [GO:0031442 "positive regulation of mRNA
3'-end processing" evidence=IEA;ISO;ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA;ISO;ISS] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA;ISO] [GO:0045638 "negative regulation
of myeloid cell differentiation" evidence=IEA;ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO;ISS] RGD:1549772 GO:GO:0005730
GO:GO:0016055 GO:GO:0045944 GO:GO:0006378 GO:GO:0006351
GO:GO:0019827 eggNOG:NOG130430 GeneTree:ENSGT00550000074952
KO:K15177 InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0001711 GO:GO:0045638 CTD:123169 HOGENOM:HOG000253934
HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC OMA:NNGTMDL EMBL:BC082098
IPI:IPI00471640 RefSeq:NP_001005548.1 UniGene:Rn.43195
STRING:Q641X2 PhosphoSite:Q641X2 PRIDE:Q641X2
Ensembl:ENSRNOT00000013512 GeneID:300837 KEGG:rno:300837
UCSC:RGD:1549772 InParanoid:Q641X2 NextBio:647616
ArrayExpress:Q641X2 Genevestigator:Q641X2
GermOnline:ENSRNOG00000010116 Uniprot:Q641X2
Length = 678
Score = 302 (111.4 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 388 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRMRRDEEGNEIK 446
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 447 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 505
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 506 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 561
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 562 ESQQRRMREK-QHQRGLSASY 581
Score = 94 (38.1 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGE-EKDQTHISHSAAEIRDVFGDSDEEDV 116
ES +ER + + D D + D S S + G E ++D+ S + +++FGD EE+
Sbjct: 13 ESEAERKDSDSGSD-SDSDQDNGASGSNASGSESDQDERGDSGQPSN-KELFGDDSEEEG 70
Query: 117 GEYAIRND--IDQDSNRSPMEEEGSYEKSIRPEDI 149
+ +D +Q NRS EE S + P D+
Sbjct: 71 APHHSGSDNHSEQSDNRSEASEERSDHEDNEPSDV 105
Score = 84 (34.6 bits), Expect = 7.7e-30, Sum P(3) = 7.7e-30
Identities = 37/158 (23%), Positives = 68/158 (43%)
Query: 3 DAEP-DPGQSEGERDQSSQEVDVVDQREESEAKYTD--SDEKEEYGQRVATSRRREVI-E 58
D EP D Q G + + D D+ ++ E +D S E G A S + E
Sbjct: 99 DNEPSDVDQHSGSEAHNDDDDDDDDEDDDDEGHRSDEGSHHSEAEGSEKAQSDDEKWDGE 158
Query: 59 SGSERSEENH-YPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
S++S+++ + +DEE +Q + ++++ + ++ E R D D + +
Sbjct: 159 DKSDQSDDDEKLQNSDDEEREQGSDDEKLQNSADEEEK-MQNTDDEDRAQLSDDDRQQLS 217
Query: 118 EYAIRNDIDQDSNRSPMEEEG-SYEKSIRPEDIVPDED 154
E N D+ S +EE + + RP+ V DE+
Sbjct: 218 EEEKGNSDDERPAASDNDEEKQNSDDEDRPQ--VSDEE 253
Score = 83 (34.3 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 39/164 (23%), Positives = 69/164 (42%)
Query: 4 AEPDPGQSEGER------DQSSQEVDVVDQREES-EAKYTDSDEKEEYGQRVATSRRR-- 54
+E + G S+ ER D+ Q D D+ + S E K +SD++ +V+ RR
Sbjct: 217 SEEEKGNSDDERPAASDNDEEKQNSDDEDRPQVSDEEKMQNSDDERP---QVSDEDRRHS 273
Query: 55 EVIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEE 114
+ E ++SE D EDE + R + E T + D+FG +D
Sbjct: 274 DDEEEQDQKSESARGSDSEDEVLRMKRKNAIPSDSEVDSDTEVPKDNNGTMDLFGGAD-- 331
Query: 115 DVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
D+ + D + P++E G + + E+ +P+ + E
Sbjct: 332 DISSGSDGEDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 373
Score = 81 (33.6 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 27/129 (20%), Positives = 59/129 (45%)
Query: 16 DQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHED- 74
D E + +R++S++ +DSD ++ G A+ ES + ++ P +++
Sbjct: 6 DLFGSEAESEAERKDSDSG-SDSDSDQDNG---ASGSNASGSESDQDERGDSGQPSNKEL 61
Query: 75 --EEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA---IRNDIDQDS 129
++ ++ +P S +Q+ A+E R D++ DV +++ ND D D
Sbjct: 62 FGDDSEEEGAPHHSGSDNHSEQSDNRSEASEERSDHEDNEPSDVDQHSGSEAHNDDDDDD 121
Query: 130 NRSPMEEEG 138
+ ++EG
Sbjct: 122 DDEDDDDEG 130
Score = 78 (32.5 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 36/151 (23%), Positives = 54/151 (35%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATSRRREVIESG 60
D++ D G S S + D + K D+ EE G + E ++
Sbjct: 28 DSDQDNGASGSNASGSESDQDERGDSGQPSNKELFGDDSEEEGAPHHSGSDNHSEQSDNR 87
Query: 61 SERSEENHYPDHEDEE---VDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
SE SEE DHED E VDQ S S + ++ D R G E G
Sbjct: 88 SEASEERS--DHEDNEPSDVDQ-HSGSEAHNDDDDDDDDEDDDDEGHRSDEGSHHSEAEG 144
Query: 118 EYAIRNDIDQDSNRSPMEEEGSYEKSIRPED 148
++D ++ ++ EK +D
Sbjct: 145 SEKAQSDDEKWDGEDKSDQSDDDEKLQNSDD 175
Score = 72 (30.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 30/154 (19%), Positives = 58/154 (37%)
Query: 2 HDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG---QRVATSRRREVIE 58
H +E + + D+ D DQ ++ E DE+ E G +++ S E
Sbjct: 138 HHSEAEGSEKAQSDDEKWDGEDKSDQSDDDEKLQNSDDEEREQGSDDEKLQNSADEEEKM 197
Query: 59 SGSERSEENHYPDHEDEEV---DQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEED 115
++ + D + +++ ++ S P + D+ +S E R D ++
Sbjct: 198 QNTDDEDRAQLSDDDRQQLSEEEKGNSDDERPAASDNDEEK-QNSDDEDRPQVSDEEKMQ 256
Query: 116 VGEYAIRNDIDQDSNRSPMEEEGSYE-KSIRPED 148
+ D+D S EEE + +S R D
Sbjct: 257 NSDDERPQVSDEDRRHSDDEEEQDQKSESARGSD 290
Score = 63 (27.2 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
M +++ + Q E + S + + DQ+ ES A+ +DS+++ V +R+ I S
Sbjct: 255 MQNSDDERPQVSDEDRRHSDDEEEQDQKSES-ARGSDSEDE------VLRMKRKNAIPSD 307
Query: 61 SERSEENHYPDHEDEEVDQ---ARSPSRSPGGEEKDQT 95
SE + P + +D A S GE+K T
Sbjct: 308 SEVDSDTEVPKDNNGTMDLFGGADDISSGSDGEDKPPT 345
Score = 44 (20.5 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 102 AEIRDVFGDSDEEDV----GEYAIRNDIDQDSNRSPMEEEGS 139
A++ D+FG E + + +D DQD+ S GS
Sbjct: 2 ADMEDLFGSEAESEAERKDSDSGSDSDSDQDNGASGSNASGS 43
Score = 43 (20.2 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 639 KLNSDEEGESSGKRKAEDDDKANKKHKKYVISDEEE 674
>UNIPROTKB|Q641X2 [details] [associations]
symbol:Leo1 "RNA polymerase-associated protein LEO1"
species:10116 "Rattus norvegicus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0033523 "histone H2B ubiquitination"
evidence=IEA] RGD:1549772 GO:GO:0005730 GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0033523 GO:GO:0010390
GO:GO:0031442 GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOGENOM:HOG000253934 HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC
OMA:NNGTMDL EMBL:BC082098 IPI:IPI00471640 RefSeq:NP_001005548.1
UniGene:Rn.43195 STRING:Q641X2 PhosphoSite:Q641X2 PRIDE:Q641X2
Ensembl:ENSRNOT00000013512 GeneID:300837 KEGG:rno:300837
UCSC:RGD:1549772 InParanoid:Q641X2 NextBio:647616
ArrayExpress:Q641X2 Genevestigator:Q641X2
GermOnline:ENSRNOG00000010116 Uniprot:Q641X2
Length = 678
Score = 302 (111.4 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 388 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRMRRDEEGNEIK 446
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 447 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 505
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 506 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 561
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 562 ESQQRRMREK-QHQRGLSASY 581
Score = 94 (38.1 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGE-EKDQTHISHSAAEIRDVFGDSDEEDV 116
ES +ER + + D D + D S S + G E ++D+ S + +++FGD EE+
Sbjct: 13 ESEAERKDSDSGSD-SDSDQDNGASGSNASGSESDQDERGDSGQPSN-KELFGDDSEEEG 70
Query: 117 GEYAIRND--IDQDSNRSPMEEEGSYEKSIRPEDI 149
+ +D +Q NRS EE S + P D+
Sbjct: 71 APHHSGSDNHSEQSDNRSEASEERSDHEDNEPSDV 105
Score = 84 (34.6 bits), Expect = 7.7e-30, Sum P(3) = 7.7e-30
Identities = 37/158 (23%), Positives = 68/158 (43%)
Query: 3 DAEP-DPGQSEGERDQSSQEVDVVDQREESEAKYTD--SDEKEEYGQRVATSRRREVI-E 58
D EP D Q G + + D D+ ++ E +D S E G A S + E
Sbjct: 99 DNEPSDVDQHSGSEAHNDDDDDDDDEDDDDEGHRSDEGSHHSEAEGSEKAQSDDEKWDGE 158
Query: 59 SGSERSEENH-YPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
S++S+++ + +DEE +Q + ++++ + ++ E R D D + +
Sbjct: 159 DKSDQSDDDEKLQNSDDEEREQGSDDEKLQNSADEEEK-MQNTDDEDRAQLSDDDRQQLS 217
Query: 118 EYAIRNDIDQDSNRSPMEEEG-SYEKSIRPEDIVPDED 154
E N D+ S +EE + + RP+ V DE+
Sbjct: 218 EEEKGNSDDERPAASDNDEEKQNSDDEDRPQ--VSDEE 253
Score = 83 (34.3 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 39/164 (23%), Positives = 69/164 (42%)
Query: 4 AEPDPGQSEGER------DQSSQEVDVVDQREES-EAKYTDSDEKEEYGQRVATSRRR-- 54
+E + G S+ ER D+ Q D D+ + S E K +SD++ +V+ RR
Sbjct: 217 SEEEKGNSDDERPAASDNDEEKQNSDDEDRPQVSDEEKMQNSDDERP---QVSDEDRRHS 273
Query: 55 EVIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEE 114
+ E ++SE D EDE + R + E T + D+FG +D
Sbjct: 274 DDEEEQDQKSESARGSDSEDEVLRMKRKNAIPSDSEVDSDTEVPKDNNGTMDLFGGAD-- 331
Query: 115 DVGEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
D+ + D + P++E G + + E+ +P+ + E
Sbjct: 332 DISSGSDGEDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 373
Score = 81 (33.6 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 27/129 (20%), Positives = 59/129 (45%)
Query: 16 DQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHED- 74
D E + +R++S++ +DSD ++ G A+ ES + ++ P +++
Sbjct: 6 DLFGSEAESEAERKDSDSG-SDSDSDQDNG---ASGSNASGSESDQDERGDSGQPSNKEL 61
Query: 75 --EEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA---IRNDIDQDS 129
++ ++ +P S +Q+ A+E R D++ DV +++ ND D D
Sbjct: 62 FGDDSEEEGAPHHSGSDNHSEQSDNRSEASEERSDHEDNEPSDVDQHSGSEAHNDDDDDD 121
Query: 130 NRSPMEEEG 138
+ ++EG
Sbjct: 122 DDEDDDDEG 130
Score = 78 (32.5 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 36/151 (23%), Positives = 54/151 (35%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATSRRREVIESG 60
D++ D G S S + D + K D+ EE G + E ++
Sbjct: 28 DSDQDNGASGSNASGSESDQDERGDSGQPSNKELFGDDSEEEGAPHHSGSDNHSEQSDNR 87
Query: 61 SERSEENHYPDHEDEE---VDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
SE SEE DHED E VDQ S S + ++ D R G E G
Sbjct: 88 SEASEERS--DHEDNEPSDVDQ-HSGSEAHNDDDDDDDDEDDDDEGHRSDEGSHHSEAEG 144
Query: 118 EYAIRNDIDQDSNRSPMEEEGSYEKSIRPED 148
++D ++ ++ EK +D
Sbjct: 145 SEKAQSDDEKWDGEDKSDQSDDDEKLQNSDD 175
Score = 72 (30.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 30/154 (19%), Positives = 58/154 (37%)
Query: 2 HDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG---QRVATSRRREVIE 58
H +E + + D+ D DQ ++ E DE+ E G +++ S E
Sbjct: 138 HHSEAEGSEKAQSDDEKWDGEDKSDQSDDDEKLQNSDDEEREQGSDDEKLQNSADEEEKM 197
Query: 59 SGSERSEENHYPDHEDEEV---DQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEED 115
++ + D + +++ ++ S P + D+ +S E R D ++
Sbjct: 198 QNTDDEDRAQLSDDDRQQLSEEEKGNSDDERPAASDNDEEK-QNSDDEDRPQVSDEEKMQ 256
Query: 116 VGEYAIRNDIDQDSNRSPMEEEGSYE-KSIRPED 148
+ D+D S EEE + +S R D
Sbjct: 257 NSDDERPQVSDEDRRHSDDEEEQDQKSESARGSD 290
Score = 63 (27.2 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
M +++ + Q E + S + + DQ+ ES A+ +DS+++ V +R+ I S
Sbjct: 255 MQNSDDERPQVSDEDRRHSDDEEEQDQKSES-ARGSDSEDE------VLRMKRKNAIPSD 307
Query: 61 SERSEENHYPDHEDEEVDQ---ARSPSRSPGGEEKDQT 95
SE + P + +D A S GE+K T
Sbjct: 308 SEVDSDTEVPKDNNGTMDLFGGADDISSGSDGEDKPPT 345
Score = 44 (20.5 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 102 AEIRDVFGDSDEEDV----GEYAIRNDIDQDSNRSPMEEEGS 139
A++ D+FG E + + +D DQD+ S GS
Sbjct: 2 ADMEDLFGSEAESEAERKDSDSGSDSDSDQDNGASGSNASGS 43
Score = 43 (20.2 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 639 KLNSDEEGESSGKRKAEDDDKANKKHKKYVISDEEE 674
>UNIPROTKB|A4FUW5 [details] [associations]
symbol:LEO1 "LEO1 protein" species:9913 "Bos taurus"
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0033523 "histone H2B ubiquitination" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0031442 "positive
regulation of mRNA 3'-end processing" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001711 "endodermal cell
fate commitment" evidence=IEA] GO:GO:0005730 GO:GO:0045944
GO:GO:0006378 GO:GO:0019827 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0033523 GO:GO:0010390
GO:GO:0031442 GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOGENOM:HOG000253934 HOVERGEN:HBG081913 OMA:NNGTMDL
EMBL:DAAA02029002 EMBL:BC120399 IPI:IPI00688485
RefSeq:NP_001076073.1 UniGene:Bt.18876 STRING:A4FUW5
Ensembl:ENSBTAT00000018400 GeneID:507524 KEGG:bta:507524
NextBio:20868102 Uniprot:A4FUW5
Length = 584
Score = 302 (111.4 bits), Expect = 7.3e-31, Sum P(2) = 7.3e-31
Identities = 70/201 (34%), Positives = 109/201 (54%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + DE G + R++L+ N +RWR ++++G
Sbjct: 378 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG-RTRLKLKVENTIRWRIRRDEEGNEIK 436
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 437 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 495
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 496 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 551
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 552 ESQQRRMREK-QHQRGLSASY 571
Score = 99 (39.9 bits), Expect = 7.3e-31, Sum P(2) = 7.3e-31
Identities = 41/161 (25%), Positives = 71/161 (44%)
Query: 3 DAEPDPGQSEGERDQSSQ-EVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGS 61
DA+ DP + + + S + + V + +D DE+++ G+ +E+ S
Sbjct: 11 DADSDPERKDSDSGSGSDSDQENVASGSNASGSESDQDERDDAGK----PSNKELFGDDS 66
Query: 62 ERSEENHYP--DHEDEEVDQARSPSRSPGGEEKDQTHIS-HSAAEIRDVFGDSDEEDVGE 118
E +H+ D+ E D S E+ D + + HS +E R+ D+D+ED G
Sbjct: 67 EDEGASHHSGSDNHSEGSDNRSEASEHSDHEDNDPSDVDQHSGSETRN---DNDDEDEGH 123
Query: 119 YAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYES 159
+ D S+ S E EGS EK+ ++ ED +S
Sbjct: 124 RS-----DGGSHHS--EAEGS-EKAHSDDEKWGREDKSDQS 156
Score = 91 (37.1 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 35/118 (29%), Positives = 49/118 (41%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATSRRREVIESG 60
D E P SE ER Q S+E E A D DEK+ +R S ++ S
Sbjct: 191 DDEERPQLSEDERQQLSEEEKANSDDERPVASDND-DEKQNSDDEERPQISDEEKMQNSD 249
Query: 61 SER---SEENHYPDHEDEEVDQARSPSRSPGGEEKDQT-HISHSAAEIRDVFGDSDEE 114
ER S+E H H D+E +Q + G + +D+ + A D +SD E
Sbjct: 250 DERPQPSDEEHR--HSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEAESDTE 305
Score = 90 (36.7 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 38/153 (24%), Positives = 65/153 (42%)
Query: 11 SEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYP 70
S E DQ ++ D + ++ + D E E + E ++ SE SE + +
Sbjct: 41 SGSESDQDERD-DA--GKPSNKELFGDDSEDEGASHHSGSDNHSEGSDNRSEASEHSDHE 97
Query: 71 DHEDEEVDQARSPSRSPGGEEKDQTHIS-----HSAAEIRDVFGDSDEEDVGEYAIRNDI 125
D++ +VDQ +++D+ H S HS AE + SD+E G +
Sbjct: 98 DNDPSDVDQHSGSETRNDNDDEDEGHRSDGGSHHSEAEGSEK-AHSDDEKWGREDKSDQS 156
Query: 126 DQDSNRSPMEEE---GSYEKSIRPEDIVPDEDM 155
D + ++ +EE GS E ++ D DE M
Sbjct: 157 DDEKIQNSDDEERAQGSDEDKLQNSD--DDEKM 187
Score = 81 (33.6 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
Identities = 34/161 (21%), Positives = 64/161 (39%)
Query: 4 AEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATS----RRREVI 57
+E + S+ ER +S D ++ E +EK + +R S R +
Sbjct: 207 SEEEKANSDDERPVASDNDDEKQNSDDEERPQISDEEKMQNSDDERPQPSDEEHRHSDDE 266
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
E +SE D EDE + R + + E + T + + D+FG +D D+
Sbjct: 267 EEQDHKSESARGSDSEDEVLRMKRKNAIASDSEAESDTEVPKDNSGTMDLFGGAD--DIS 324
Query: 118 EYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
+ D + P++E G + + E+ +P+ + E
Sbjct: 325 SGSDGEDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 363
Score = 70 (29.7 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 27/132 (20%), Positives = 55/132 (41%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEK-----EEYGQRVATSRRREVIES 59
E QS+ E+ Q+S + + +E + + +D DEK +E +++ R+++ E
Sbjct: 150 EDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSEDERQQLSEE 209
Query: 60 GSERSEENH--YPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
S++ D++DE+ + EEK Q + SD+E+
Sbjct: 210 EKANSDDERPVASDNDDEKQNSDDEERPQISDEEKMQNSDDERPQPSDEEHRHSDDEEEQ 269
Query: 118 EYAIRNDIDQDS 129
++ + DS
Sbjct: 270 DHKSESARGSDS 281
Score = 70 (29.7 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 31/159 (19%), Positives = 63/159 (39%)
Query: 2 HDAEPDPGQSEGERDQSSQE-VDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
+D E + +S+G S E + +E + SD+ ++ +++ S E +
Sbjct: 116 NDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDD--EKIQNSDDEERAQGS 173
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
E +N D + + D P S ++ ++ + R V D+D+E
Sbjct: 174 DEDKLQNSDDDEKMQNTDDEERPQLSEDERQQLSEEEKANSDDERPVASDNDDEK----- 228
Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYES 159
+N D++ + EE+ RP+ P ++ H S
Sbjct: 229 -QNSDDEERPQISDEEKMQNSDDERPQ---PSDEEHRHS 263
>UNIPROTKB|Q5R4D6 [details] [associations]
symbol:LEO1 "RNA polymerase-associated protein LEO1"
species:9601 "Pongo abelii" [GO:0001711 "endodermal cell fate
commitment" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISS] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0031442
GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOVERGEN:HBG081913 EMBL:CR861315 RefSeq:NP_001127657.1
UniGene:Pab.18485 GeneID:100174739 KEGG:pon:100174739
InParanoid:Q5R4D6 Uniprot:Q5R4D6
Length = 666
Score = 295 (108.9 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 69/201 (34%), Positives = 108/201 (53%)
Query: 196 IKVSNIMGIDPKPFDPKTYVEE--DTFVTDESGAKKRIRLE-NNIVRWRTVKNKDGMTSY 252
+K+ N + ++P+PFDP+ Y +E D + D G + R++L+ N +RWR ++++G
Sbjct: 376 VKLPNFLSVEPRPFDPQYYEDEFEDEEMLDGEG-RTRLKLKVENTIRWRIRRDEEGNEIK 434
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIP 312
ESNAR V+WSDGS+ L +GNEV D+ Q D HLF+R G G LQ Q K+ F P
Sbjct: 435 ESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTG-LQGQAVFKTKLTFRP 493
Query: 313 SSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXSQNIRANVLLNRKR 371
S S +HR +T + R K K++ + DP + +RA++ +R
Sbjct: 494 HSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASI----RR 549
Query: 372 EKINRKYTQTVERRRQLSTGY 392
E R+ + + +R LS Y
Sbjct: 550 ESQQRRMREK-QHQRGLSASY 569
Score = 99 (39.9 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 45/166 (27%), Positives = 73/166 (43%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREES-----EAKYTDSDEKEEYGQRVATSRRREVI 57
D++ D + + S E D D+R +S + + D E E + E
Sbjct: 26 DSDSDQENAASGSNASGSESDQ-DERGDSGQPSNKELFGDDSEDEGASHHSGSDNHSERS 84
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHIS-----HSAAEIRDVFGDSD 112
++ SE SE + + D++ +VDQ S S +P +E D+ H S HS AE + SD
Sbjct: 85 DNRSEASERSDHEDNDPSDVDQ-HSGSEAPNDDE-DEGHRSDGGSHHSEAEGSEKV-HSD 141
Query: 113 EEDVGEYAIRNDIDQDSNRSPMEEE---GSYEKSIRPEDIVPDEDM 155
+E G + D + ++ +EE GS E ++ D DE M
Sbjct: 142 DEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSD--DDEKM 185
Score = 88 (36.0 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 34/118 (28%), Positives = 49/118 (41%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATSRRREVIESG 60
D E P S+ ER Q S+E E A D DEK+ ++ S ++ S
Sbjct: 189 DDEERPQLSDDERQQLSEEEKANSDDERPVASDND-DEKQNSDDEEQPQLSDEEKMQNSD 247
Query: 61 SER---SEENHYPDHEDEEVDQARSPSRSPGGEEKDQT-HISHSAAEIRDVFGDSDEE 114
ER S+E H H D+E +Q + G + +D+ + A D DSD E
Sbjct: 248 DERPQASDEEHR--HSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTE 303
Score = 80 (33.2 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 34/161 (21%), Positives = 63/161 (39%)
Query: 4 AEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYG--QRVATS----RRREVI 57
+E + S+ ER +S D ++ E +EK + +R S R +
Sbjct: 205 SEEEKANSDDERPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDE 264
Query: 58 ESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVG 117
E +SE D EDE + R + + E T + + D+FG +D D+
Sbjct: 265 EEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMDLFGGAD--DIS 322
Query: 118 EYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
+ D + P++E G + + E+ +P+ + E
Sbjct: 323 SGSDGEDKPPTPGQ-PVDENGLPQDQ-QEEEPIPETRIEVE 361
Score = 72 (30.4 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 30/134 (22%), Positives = 57/134 (42%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEK-----EEYGQRVATSRRREVIES 59
E QS+ E+ Q+S + + +E + + +D DEK +E +++ R+++ E
Sbjct: 148 EDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEE 207
Query: 60 GSERSEENH--YPDHEDEEV--DQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEED 115
S++ D++DE+ D P S EEK Q + SD+E+
Sbjct: 208 EKANSDDERPVASDNDDEKQNSDDEEQPQLSD--EEKMQNSDDERPQASDEEHRHSDDEE 265
Query: 116 VGEYAIRNDIDQDS 129
++ + DS
Sbjct: 266 EQDHKSESARGSDS 279
Score = 71 (30.1 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 32/144 (22%), Positives = 57/144 (39%)
Query: 16 DQSSQEVDVVDQREESEAKYTDSDEKEEY---GQRVATSR--RREVIESGSERSEENHYP 70
D + D +R +S++ +DSD +E G + S + E +SG ++E
Sbjct: 6 DLFGSDADSEAERRDSDSG-SDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGD 64
Query: 71 DHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDSN 130
D EDE S G + + + S A R D+D DV +++ + D +
Sbjct: 65 DSEDE------GASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDED 118
Query: 131 RSPMEEEGSYEKSIRPEDIVPDED 154
+ GS+ + V +D
Sbjct: 119 EGHRSDGGSHHSEAEGSEKVHSDD 142
Score = 43 (20.2 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 512 RASDDEEEAVEPKQKARD---SGSNHKRRGIESDED 544
+ + DEE K+KA D + HK+ I +E+
Sbjct: 627 KLTSDEEGEPSGKRKAEDDDKANKKHKKYVISDEEE 662
>FB|FBgn0019637 [details] [associations]
symbol:Atu "Another transcription unit" species:7227
"Drosophila melanogaster" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
EMBL:AE014297 GO:GO:0035206 EMBL:U75467 EMBL:AY075403
RefSeq:NP_524240.1 UniGene:Dm.2485 MINT:MINT-1741247 STRING:Q94546
PaxDb:Q94546 EnsemblMetazoa:FBtr0078704 GeneID:40684
KEGG:dme:Dmel_CG1433 CTD:40684 FlyBase:FBgn0019637 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 HOGENOM:HOG000263903 InParanoid:Q94546
KO:K15177 OMA:NTIRWRE OrthoDB:EOG4J3V06 PhylomeDB:Q94546
GenomeRNAi:40684 NextBio:820046 Bgee:Q94546 GermOnline:CG1433
InterPro:IPR007149 Pfam:PF04004 Uniprot:Q94546
Length = 725
Score = 277 (102.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 66/160 (41%), Positives = 91/160 (56%)
Query: 192 KMNMIKVSNIMGIDPKPFDPKTYVEE-DTFVT-DESGAKKRIRLE-NNIVRWRTVKNKDG 248
+ + IK+ N + + PFDP+TY +E D T DE G ++RI+L+ +N +RWR N G
Sbjct: 394 EQHFIKLPNFLSVVTHPFDPETYEDEIDEEETMDEEG-RQRIKLKVSNTIRWREYMNNKG 452
Query: 249 MTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKM 308
ESNARFVRWSDGS+ L +GNE+ D Q D HLF+R G G LQ Q K+
Sbjct: 453 DMVRESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHNHLFVRQGTG-LQGQSVFRTKL 511
Query: 309 RFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDI--DP 346
F P S S +H+ +T + R K +K +T + DP
Sbjct: 512 TFRPHSTESFTHKKMTMSLADRSSKTSGIK-ILTQVGKDP 550
Score = 72 (30.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 25/104 (24%), Positives = 43/104 (41%)
Query: 45 GQRVATSRRREVIESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEI 104
G V +++ SGS++ ++ D + EE SR + + A
Sbjct: 242 GSDVGVPKKKARKASGSDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKAPAA 301
Query: 105 RDVFGD----SDEEDVGEYAIRNDIDQDSNRSPMEEEGSYEKSI 144
D+FGD SD+ED A R + +RS + S+ +S+
Sbjct: 302 ADIFGDADDISDDEDEAGPAARKSPVRSKSRSQSKSH-SHSRSM 344
Score = 72 (30.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 33/122 (27%), Positives = 55/122 (45%)
Query: 11 SEGERDQSSQEVDVVD---QREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEEN 67
S+ E+ +S + D+ + + ++S TDSD ++ G++ + ++ + S
Sbjct: 258 SDQEKKKSGSDSDIEESPTKAKKSRLIDTDSDSNQDVGKKAPAAA--DIFGDADDIS--- 312
Query: 68 HYPDHEDEEVDQAR-SPSRSPG-GEEKDQTH---ISHSAAEIRDVFGDSDEEDVGEYAIR 122
D EDE AR SP RS + K +H +SHS + R D E V E A +
Sbjct: 313 ---DDEDEAGPAARKSPVRSKSRSQSKSHSHSRSMSHSRSRSRSRSRDKVESQV-ESAPK 368
Query: 123 ND 124
D
Sbjct: 369 ED 370
Score = 57 (25.1 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 38/154 (24%), Positives = 57/154 (37%)
Query: 10 QSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHY 69
QS+ +S + EES + + E + SR R SGS S
Sbjct: 165 QSDRSESRSRSHSGSLKGNEESRSNSPNLQIDVERANSKSGSRSRSRSRSGSRTSRSRSK 224
Query: 70 PDHEDEEVDQARSPSRSPGGEE-----KDQTHISHSAAEIRDVFGDSDEEDVGEYAIRN- 123
+++RS S S G + K S S E + DSD E+ A ++
Sbjct: 225 TGTPSP--NRSRSGSASGSGSDVGVPKKKARKASGSDQEKKKSGSDSDIEESPTKAKKSR 282
Query: 124 --DIDQDSNRSPMEEEGSYEKSIRP-EDIVPDED 154
D D DSN+ ++ + +DI DED
Sbjct: 283 LIDTDSDSNQDVGKKAPAAADIFGDADDISDDED 316
>DICTYBASE|DDB_G0286051 [details] [associations]
symbol:leo1 "RNA polymerase II complex component"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] dictyBase:DDB_G0286051 GO:GO:0005634
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0006351
EMBL:AAFI02000085 eggNOG:NOG130430 KO:K15177 InterPro:IPR007149
Pfam:PF04004 OMA:RHEIDEE RefSeq:XP_637916.1 STRING:Q54MB8
EnsemblProtists:DDB0267056 GeneID:8625427 KEGG:ddi:DDB_G0286051
Uniprot:Q54MB8
Length = 487
Score = 288 (106.4 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 90/338 (26%), Positives = 149/338 (44%)
Query: 26 DQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHE-DEEVDQARSPS 84
D+R+ E + D K+ T+ E + + R EEN D + D+ +
Sbjct: 8 DERQILEGTFVDKSSKQ-------TTNDNENNNNNNNREEENENQDKNVTTKNDEDNNND 60
Query: 85 RSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDSNRSPMEEEGSYEKSI 144
+ G ++ D E +V +SD E + D DQ+ + E+E Y
Sbjct: 61 ANDGDDDDDDLFGDKDLEENDNV--NSDNEKNKSKKDKEDQDQEEQQEDQEDE-EYSNKK 117
Query: 145 RPEDIVPDEDMHY--ESXXXXXXXXXXXXXXGXXXXXXXXXXXXXADPT----------- 191
+ + +++ H E G DP
Sbjct: 118 KKKKSKKNKNRHSTEEDETMEDANENLDFATGAGEEEEEEEPELIRDPITLTHIETSNVL 177
Query: 192 ---KMNMIKVSNIMGIDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRTVKNKDG 248
K+ +K+ NI+GI PKPFDP T+ +E+ DE K + +E+ ++RWR + +G
Sbjct: 178 PAQKIMKLKLLNILGIQPKPFDPITFEDEEAMNGDE---KSKFNVES-VIRWRWGLDLNG 233
Query: 249 MTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKGILQSQGRILKKM 308
+ ESN R V WSDGS L IGNEVL+I Q Q++Q +++ G ++ +G+I ++
Sbjct: 234 RPAKESNTRLVTWSDGSSHLYIGNEVLEIKEQPLQNEQFYVYSSQD-GFIECEGKIDSRL 292
Query: 309 RFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDP 346
P+++ S H+ L+ V R KV K+K+ T +DP
Sbjct: 293 SIRPTNIKSKVHQRLSENVAKRTVKVSKIKSIHTTLDP 330
Score = 43 (20.2 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 514 SDDEEEAVEPKQKARDSGSNHKRR--GIESDEDSPPRKMPTHRRMA--VVYDSDEE 565
SD + ++ + + K + N+K R + DED + + +++ V+ D D++
Sbjct: 430 SDGDNKSKKKENKNSNDNKNNKSRKQDFDDDEDEDEDLIVSTKKVKRRVIDDDDDD 485
Score = 40 (19.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 515 DDEEEAVEPKQKARDSGSNHKRR-GIESDE 543
DDE+E + +++ D GS+ G ES E
Sbjct: 396 DDEDEEDDDYKESDDDGSDSSDDDGSESGE 425
>WB|WBGene00007110 [details] [associations]
symbol:B0035.11 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0040018 GO:GO:0040035 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 EMBL:Z73102 OMA:RAHIRRT PIR:T18651 RefSeq:NP_502135.1
ProteinModelPortal:Q17431 STRING:Q17431 PaxDb:Q17431
EnsemblMetazoa:B0035.11.1 EnsemblMetazoa:B0035.11.2 GeneID:178052
KEGG:cel:CELE_B0035.11 UCSC:B0035.11 CTD:178052 WormBase:B0035.11
HOGENOM:HOG000017965 InParanoid:Q17431 NextBio:899518
Uniprot:Q17431
Length = 430
Score = 229 (85.7 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 52/185 (28%), Positives = 100/185 (54%)
Query: 188 ADPTKMNMIKVSNIMGIDPKPFDPKTYVE----EDTFVTDESGAKKRIRLENNIVRWRTV 243
ADP + +++ N + + PFDP+ Y E E + DE + ++R+EN + RWR
Sbjct: 163 ADPP--HFVRMPNFLSVATHPFDPQHYEEDEDDEQAKLDDEGRTRLKLRVENTL-RWRVR 219
Query: 244 KNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQA-HLFLRHGKGILQSQG 302
K+++G ESNA+ V+W DG++ L +GNE+ ++++ + HL+++ ++ +Q
Sbjct: 220 KDENGKEIRESNAKIVKWDDGTMSLYLGNEIFEVSLVPLNSNNLPHLYVKQPT-LMSAQA 278
Query: 303 RILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDI--DPXXXXXXXXXXXSQN 360
+ +M F P S S +HR +T + R +K +VK + D+ +P ++
Sbjct: 279 VLTHRMTFRPHSTDSQTHRKVTLNMADRSRKNAQVK-VMDDVGQNPEITRRENARKEEES 337
Query: 361 IRANV 365
+RA++
Sbjct: 338 LRAHI 342
Score = 62 (26.9 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 33/144 (22%), Positives = 54/144 (37%)
Query: 11 SEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYP 70
SEG D S+ V S DS +K+E ++ A + + R
Sbjct: 4 SEGNSDASAPGTPVKSSTPSSRGSSPDSPKKQEPSKKRAILNESD--DDDDSRPAPRQLS 61
Query: 71 DHEDEEVD-QARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDS 129
D D+ + + SPG +S S+ + D G E + A +D D +S
Sbjct: 62 DSSDDNIHPRGGGEKSSPGAGGGLFGDLSGSSDDDSDREGKPKESNTR--ARLSDSDAES 119
Query: 130 NRSPMEEEGSYEKSIRPEDIVPDE 153
S + +G + P++I DE
Sbjct: 120 RGSLNDLQGIVMAN--PDEIDEDE 141
Score = 52 (23.4 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 529 DSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE 565
D K+ G +SD D RK ++ +V SDEE
Sbjct: 393 DHADTTKKSGSDSDSDEEYRKRKQQQKKQIV-TSDEE 428
>SGD|S000005649 [details] [associations]
symbol:LEO1 "Component of the Paf1 complex" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IPI] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI] [GO:0001076 "RNA polymerase
II transcription factor binding transcription factor activity"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0080182 "histone H3-K4
trimethylation" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IGI] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IDA] [GO:2001173 "regulation of histone H2B
conserved C-terminal lysine ubiquitination" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] SGD:S000005649 EMBL:BK006948 GO:GO:0003723
GO:GO:0006368 EMBL:X90518 EMBL:X94335 GO:GO:0001076
eggNOG:NOG130430 GeneTree:ENSGT00550000074952 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0080182
GO:GO:0016593 GO:GO:2001209 GO:GO:2001173 GO:GO:0090262 EMBL:X77135
EMBL:Z75031 EMBL:M94916 PIR:S45363 RefSeq:NP_014766.1
ProteinModelPortal:P38439 DIP:DIP-4143N IntAct:P38439
MINT:MINT-494366 STRING:P38439 PaxDb:P38439 PeptideAtlas:P38439
EnsemblFungi:YOR123C GeneID:854290 KEGG:sce:YOR123C CYGD:YOR123c
HOGENOM:HOG000000787 OMA:MVGVEKR OrthoDB:EOG4N07Q6 NextBio:976275
Genevestigator:P38439 GermOnline:YOR123C Uniprot:P38439
Length = 464
Score = 235 (87.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 99/382 (25%), Positives = 157/382 (41%)
Query: 11 SEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYP 70
SE +DQ +E Q + T+S EE R +EV +G++ ++E
Sbjct: 3 SESPQDQPQKE-----QISNNVGVTTNSTSNEETS-RSQDDNVKEV--NGNDDTKEEE-- 52
Query: 71 DHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQDS- 129
ED E+D ++ D + S E D DSDE+D GE ++S
Sbjct: 53 QEEDAELDDLFGDDN----DDDDDDDVKKSETEKSD--SDSDEDDEGENINHRSRHRESL 106
Query: 130 --NRSPMEEEGSYEKSIRPEDIVPDEDMHYESXXXXXXXXXXXXXXGXXXXXXXXXXXXX 187
+ EE+ Y + ED D E+
Sbjct: 107 GLDDDEAEEQAMYTRKFYGEDANNFSDQD-ETTHTFKEENVELVRH---IIPSKANVNET 162
Query: 188 ADPTKMNMIKVSNIMGIDPKPFDPKTY---VEE--DTFVTDESGAKKRIRLENNIVRWRT 242
A ++ ++ N + IDP PFDP ++ V E + E R+ ++ N VRWR
Sbjct: 163 ASHNEIFYARIPNFLTIDPIPFDPPSFEAKVNERASNSASREDQLDDRL-IDENTVRWRY 221
Query: 243 VKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKG-ILQSQ 301
++KD ESN + V+WSDG+ L++G E DI V D + L + H + ++Q
Sbjct: 222 SRDKDQHVFKESNTQIVQWSDGTYSLKVGEECTDILVNDTSN--TFLTVSHDQQELIQCY 279
Query: 302 --GRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNC-ITDIDPXXXXXXXXXXXS 358
G I K + FIP+S +S H+ L+ V R+++ K I +DP S
Sbjct: 280 EGGEIKKTLMFIPTSTNSKIHQKLSKAVIRRNQRQSKGPGTYIVSMDPEVEKKELERKQS 339
Query: 359 QNIRANVLLNRKREKINRKYTQ 380
Q +L +R+R ++ K Q
Sbjct: 340 Q-----ILRDRRRRQLKEKEKQ 356
Score = 66 (28.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 515 DDEEEAVEPKQKARDSGS---NHKRRGI----ESDEDSPPRKMPTHRRMAVVYDSDEE 565
DD EE E + ++ S N KR G E +E+ R RR+AV+ D ++E
Sbjct: 406 DDNEEEEEEEDADEENASRLRNLKREGAAMYREEEEEEKDRSETKRRRVAVIEDDEDE 463
Score = 50 (22.7 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 515 DDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE 565
DDEEE + D+ + ++DE++ R R A +Y +EE
Sbjct: 393 DDEEEEAAFDDEEDDNEEEEEEE--DADEENASRLRNLKREGAAMYREEEE 441
>CGD|CAL0002849 [details] [associations]
symbol:orf19.7116 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0001076 "RNA polymerase II
transcription factor binding transcription factor activity"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0080182 "histone
H3-K4 trimethylation" evidence=IEA] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IEA] [GO:2001173 "regulation of histone H2B
conserved C-terminal lysine ubiquitination" evidence=IEA]
CGD:CAL0002849 EMBL:AACQ01000024 eggNOG:NOG130430 KO:K15177
InterPro:IPR007149 Pfam:PF04004 RefSeq:XP_720406.1
RefSeq:XP_888641.1 STRING:Q5AFF1 GeneID:3638011 GeneID:3704108
KEGG:cal:CaO19.7116 KEGG:cal:CaO19_7116 Uniprot:Q5AFF1
Length = 317
Score = 193 (73.0 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 61/206 (29%), Positives = 100/206 (48%)
Query: 193 MNMIKVSNIMGIDPKPFDPKTY---VEEDTFVTDESG-AKKRIR--------LENNIVRW 240
+ ++K + + I+ PFDP ++ +E + V E G K I L N +RW
Sbjct: 36 VRLLKTPDFLNIEAHPFDPSSFKEQIESNNKVRRERGLTAKEIHNEQMTEKLLNENTIRW 95
Query: 241 RTVKNKDGMTSYESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRHGKG--IL 298
R + +SNA FV WSDGS+ L++GNEV D+ + D HL ++ + +L
Sbjct: 96 RYHNAGNDEIVKQSNAHFVEWSDGSVSLKVGNEVYDVR-ELPMFD--HLLVKSHQAAEVL 152
Query: 299 QSQGRILKKMRFIPSSLSSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXXXS 358
Q+ + K + +P+S +SHR + LV + KK K+ N ITD+DP
Sbjct: 153 QADSILSKSINLLPAS---SSHRKI--LVKNITKKE-KILNTITDVDPLEKQRLA----D 202
Query: 359 QNIRANVLLNRKREKINRKYTQTVER 384
+++R + + R+ E R + ER
Sbjct: 203 EDVRKAMKMKRQMESRRRLQEEKWER 228
Score = 54 (24.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 509 DINRASDDEE--EAVEPKQKARDSGS-NHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE 565
+I ++EE E + ++ G+ ++R + DED RK RR + DSDEE
Sbjct: 264 EIEEYEEEEEFERGAERLTQLKEEGAAKYRRHSEDEDEDEKTRK---RRR---IIDSDEE 317
>POMBASE|SPBC13E7.08c [details] [associations]
symbol:SPBC13E7.08c "RNA polymerase II associated Paf1
complex (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=ISO] [GO:0016593 "Cdc73/Paf1
complex" evidence=ISO] PomBase:SPBC13E7.08c EMBL:CU329671
GO:GO:0003723 GO:GO:0006368 eggNOG:NOG130430 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0016593 OrthoDB:EOG4N07Q6
RefSeq:NP_596263.1 STRING:Q9P6R2 PRIDE:Q9P6R2
EnsemblFungi:SPBC13E7.08c.1 GeneID:2539726 KEGG:spo:SPBC13E7.08c
OMA:IRWRYHN NextBio:20800877 Uniprot:Q9P6R2
Length = 429
Score = 169 (64.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 59/207 (28%), Positives = 93/207 (44%)
Query: 198 VSNIMGIDPKPFDPKTYVEE---DTFVTDESGA-KKRIRLE-NNIVRWRTVKNKDGMTSY 252
+ N + ++ P+DP+ Y E D + + +RI+ + +N VRWR G SY
Sbjct: 93 IPNFLSVEQTPYDPEQYAAEAEADAALLEHDAHWGQRIKHKVDNTVRWRL--GPSG--SY 148
Query: 253 ESNARFVRWSDGSLQLQIGNEVLDITVQDAQHDQAHLFLRH-GKGILQSQGRILKKMRFI 311
+SNA+ V+WSDGS L+IGN++ D T + H + +L+ Q F+
Sbjct: 149 QSNAQIVQWSDGSYSLRIGNDIYD-TQNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFL 207
Query: 312 PSSLSSN------SHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXXXSQNIRANV 365
PS++++ S RL T V SR V+ I + DP + RA
Sbjct: 208 PSAINTATRSKLPSMRLTTVQVPSR-----SVQEIIIEKDPELLKRQAEKYEEERSRARR 262
Query: 366 LLNRKREKINRKYTQTVERRRQLSTGY 392
L KR+++N T E S+ Y
Sbjct: 263 RLE-KRKQLNNYQNGTGEEEEDYSSFY 288
Score = 43 (20.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDE 40
E D SE E + +SQ+ ++++ E++++ SD+
Sbjct: 13 EEDDLFSENEDNHTSQQDELINGHIENDSETAVSDD 48
Score = 43 (20.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 515 DDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDE 564
+ EEE E ++ + G+ +G ++D+++ + ++ Y+ DE
Sbjct: 347 EQEEEQEEDEEDEEEVGAGSDIKGFDADKEASVARATINK-----YEDDE 391
>GENEDB_PFALCIPARUM|PFD0207c [details] [associations]
symbol:PFD0207c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000156 SMART:SM00160
GO:GO:0046907 EMBL:AL844503 RefSeq:XP_001351355.1
ProteinModelPortal:Q8I1Y6 PRIDE:Q8I1Y6
EnsemblProtists:PFD0207c:mRNA GeneID:812454 KEGG:pfa:PFD0207c
EuPathDB:PlasmoDB:PF3D7_0404300 OMA:ANEDEFP ProtClustDB:CLSZ2433358
Uniprot:Q8I1Y6
Length = 639
Score = 137 (53.3 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 34/155 (21%), Positives = 72/155 (46%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
+ +AE + + E + D+ +E D ++ EE + + D +++EE + E +
Sbjct: 143 VRNAEDE--EEEEDEDEEEEEEDEEEEEEEEDEEEEDEEDEEEEDEEDEEEEDEEDEDEE 200
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
E E+ + EDEE ++ + + GEE D E D + D+E+ +
Sbjct: 201 DEEDEDEEDEEDEDEEDEEENDDNGNDDGEENDDNEKDDDDEEKDDEEENDDDEENDDDE 260
Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDM 155
+D++ D N + +EE + ++ +D+ D+D+
Sbjct: 261 NDDDVENDDNENDDDEENNDNEN--DDDVENDDDV 293
>UNIPROTKB|Q8I1Y6 [details] [associations]
symbol:PFD0207c "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000156 SMART:SM00160 GO:GO:0046907
EMBL:AL844503 RefSeq:XP_001351355.1 ProteinModelPortal:Q8I1Y6
PRIDE:Q8I1Y6 EnsemblProtists:PFD0207c:mRNA GeneID:812454
KEGG:pfa:PFD0207c EuPathDB:PlasmoDB:PF3D7_0404300 OMA:ANEDEFP
ProtClustDB:CLSZ2433358 Uniprot:Q8I1Y6
Length = 639
Score = 137 (53.3 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 34/155 (21%), Positives = 72/155 (46%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
+ +AE + + E + D+ +E D ++ EE + + D +++EE + E +
Sbjct: 143 VRNAEDE--EEEEDEDEEEEEEDEEEEEEEEDEEEEDEEDEEEEDEEDEEEEDEEDEDEE 200
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
E E+ + EDEE ++ + + GEE D E D + D+E+ +
Sbjct: 201 DEEDEDEEDEEDEDEEDEEENDDNGNDDGEENDDNEKDDDDEEKDDEEENDDDEENDDDE 260
Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDM 155
+D++ D N + +EE + ++ +D+ D+D+
Sbjct: 261 NDDDVENDDNENDDDEENNDNEN--DDDVENDDDV 293
>ZFIN|ZDB-GENE-070912-423 [details] [associations]
symbol:rpgra "retinitis pigmentosa GTPase regulator
a" species:7955 "Danio rerio" [GO:0072001 "renal system
development" evidence=IMP] INTERPRO:IPR000408 Pfam:PF00415
ZFIN:ZDB-GENE-070912-423 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GO:GO:0072001 GeneTree:ENSGT00700000104160 EMBL:BX571713
IPI:IPI00955233 RefSeq:XP_003199276.1 Ensembl:ENSDART00000079095
GeneID:571327 KEGG:dre:571327 CTD:571327 NextBio:20890513
Bgee:F1QV77 Uniprot:F1QV77
Length = 1698
Score = 135 (52.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 41/158 (25%), Positives = 74/158 (46%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEY-GQRVATSRRR-----EV 56
DAE + + E E + S ++++ ++ + E + ++ E E + V+ + R E
Sbjct: 1195 DAEDEEEERESEDEDSERQIEDEEKTDAEEGESSNEGEPERSESEDVSKNDRSDEEEGES 1254
Query: 57 IESGSERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDV 116
E+GSER EE + E EE + + EE++QT ++ ++ ED
Sbjct: 1255 EENGSEREEEEDVLEGEQEESEVGNEDEENQEEEEENQTKEEEEEENNEEMKEENSSEDE 1314
Query: 117 GEYAIRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDED 154
GE ++R +Q+ + EEGS E+ E I +ED
Sbjct: 1315 GEESVREKEEQEVEEEKLSEEGS-ERQEGDEQI-EEED 1350
Score = 121 (47.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 36/151 (23%), Positives = 67/151 (44%)
Query: 10 QSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHY 69
+SEG+ + +++ D D+ EE E++ DS+ + E ++ E ERSE
Sbjct: 1182 ESEGQEEGETEDKDAEDEEEERESEDEDSERQIEDEEKTDAEEGESSNEGEPERSESEDV 1241
Query: 70 PDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRN--DIDQ 127
+++ D+ S G E +++ + E +V G+ DEE+ E + ++
Sbjct: 1242 S--KNDRSDEEEGESEENGSEREEEEDVLEGEQEESEV-GNEDEENQEEEEENQTKEEEE 1298
Query: 128 DSNRSPMEEEGSYEKSIRPEDIVPDEDMHYE 158
+ N M+EE S E E + E+ E
Sbjct: 1299 EENNEEMKEENSSEDE-GEESVREKEEQEVE 1328
Score = 118 (46.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 39/159 (24%), Positives = 67/159 (42%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVI-ESGSER 63
E + Q E E +Q+ +E + + E E ++ + +E ++ E + E GSER
Sbjct: 1280 EDEENQEEEEENQTKEEEEEENNEEMKEENSSEDEGEESVREKEEQEVEEEKLSEEGSER 1339
Query: 64 SEENHYPDHEDEEVD-QARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIR 122
E + + EDEE + + + S E + ++ D G +EED E +
Sbjct: 1340 QEGDEQIEEEDEEGEKEGKMKSSEVKFREAETDDEENNEENTEDKSGSGEEEDDDETEKQ 1399
Query: 123 NDIDQDSNRSPMEEEGSYEKSIRPE--DIVPDEDMHYES 159
+ +R EEEG E+ E D +E+ ES
Sbjct: 1400 EERHGRKDRETEEEEGGEEEEEEAEQKDTSEEEEQAEES 1438
Score = 55 (24.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 511 NRASDDEEEAVEPKQKA-RDSGSNHKRRGIESDEDSPPRK 549
N ++EEE E K+K R+S + G E E+ +K
Sbjct: 1465 NEEEEEEEEEAEWKEKKQRESNEEEEEEGEEEKEEEGEQK 1504
Score = 52 (23.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 515 DDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE 565
DDE E E + +D + + G E +E++ + A + +EE
Sbjct: 1393 DDETEKQEERHGRKDRETEEEEGGEEEEEEAEQKDTSEEEEQAEESEEEEE 1443
Score = 47 (21.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 515 DDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVVYDSDEE 565
++EEE E +++ + + K + I++ +D ++ T ++EE
Sbjct: 1525 EEEEEGEEEEEEGEEEENEPKNKNIKTGKDGRKQRTITEEEEEEEEGNEEE 1575
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 511 NRASDDEEEAVEPKQKARDSGSNHKRRGIESDED 544
N ++EEE + ++K + N ++ + S+E+
Sbjct: 1572 NEEEEEEEEETKREKKNIKTEKNRHKQTVTSEEE 1605
Score = 42 (19.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 515 DDEEEAVEPKQKARDSGS--NHKRRGIESDEDSPPRKMPTHRR 555
++EEE+ E + + D N K + I + + + P +P R+
Sbjct: 1614 EEEEESEEEEGQEEDESEEENEKTKKI-TKQKAKPNVLPARRQ 1655
Score = 42 (19.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 514 SDDEEEAVEPKQKARDSGSNHK-RRGIESDEDSPPRKMPTHRR 555
S++EEE E +++ + + + ES+E++ K T ++
Sbjct: 1602 SEEEEEGEEEEEEEEEESEEEEGQEEDESEEENEKTKKITKQK 1644
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 514 SDDEEEAVEPKQKARDSGSNHKRRGIESDED 544
S++EE+A E +++ ++ N + S+E+
Sbjct: 1429 SEEEEQAEESEEEEEETEQNSGKTRETSEEE 1459
Score = 38 (18.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 514 SDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRK 549
+DDEE E + SG E E+ RK
Sbjct: 1371 TDDEENNEENTEDKSGSGEEEDDDETEKQEERHGRK 1406
Score = 37 (18.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 517 EEEAVEPKQKARDSGSNHKRRGIESDED 544
EEE E +++ + S K R E+D++
Sbjct: 1347 EEEDEEGEKEGKMKSSEVKFREAETDDE 1374
Score = 37 (18.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 515 DDEEEAVEPKQKARDSGSNHKRRGIESDED 544
+++EE E K+ N K R + +E+
Sbjct: 1495 EEKEEEGEQKENVEKDKQNSKLRENKDEEE 1524
>UNIPROTKB|B8ZZQ6 [details] [associations]
symbol:PTMA "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
GO:GO:0005634 GO:GO:0005737 EMBL:AC073476 InterPro:IPR004931
PANTHER:PTHR22745 Pfam:PF03247 HOGENOM:HOG000089972 HGNC:HGNC:9623
ChiTaRS:PTMA HOVERGEN:HBG107042 IPI:IPI00916480 SMR:B8ZZQ6
STRING:B8ZZQ6 Ensembl:ENST00000409683 Uniprot:B8ZZQ6
Length = 107
Score = 86 (35.3 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
M DA D +D ++ +VV++ E + + EE G++ A + E E G
Sbjct: 1 MSDAAVDTSSEITTKDLKEKK-EVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEG 59
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHI 97
E EE D + +E ++A S + E+ + +
Sbjct: 60 GEEEEEEEEGDEDGDEDEEAESATGKRAAEDDEDDDV 96
Score = 39 (18.8 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 513 ASDDEEEAVEPKQKARD 529
A DDE++ V+ K++ D
Sbjct: 88 AEDDEDDDVDTKKQKTD 104
>UNIPROTKB|P06454 [details] [associations]
symbol:PTMA "Prothymosin alpha" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] GO:GO:0005634
GO:GO:0005737 GO:GO:0006351 InterPro:IPR004931 PANTHER:PTHR22745
Pfam:PF03247 HOGENOM:HOG000089972 KO:K13784 EMBL:M14630 EMBL:M14483
EMBL:M67480 EMBL:J04797 EMBL:M26708 EMBL:AF348514 EMBL:BC051265
EMBL:BC066905 EMBL:BC070480 EMBL:BC071647 EMBL:BC071879 EMBL:S56449
IPI:IPI00455510 IPI:IPI00827535 PIR:A42004 PIR:C33356
RefSeq:NP_001092755.1 RefSeq:NP_002814.3 UniGene:Hs.459927 PDB:2L9I
PDBsum:2L9I ProteinModelPortal:P06454 SMR:P06454 IntAct:P06454
MINT:MINT-138772 STRING:P06454 PhosphoSite:P06454 DMDM:135834
PaxDb:P06454 PRIDE:P06454 DNASU:5757 Ensembl:ENST00000341369
Ensembl:ENST00000409115 GeneID:5757 KEGG:hsa:5757 UCSC:uc002vsc.4
CTD:5757 GeneCards:GC02P232536 HGNC:HGNC:9623 HPA:HPA047183
MIM:188390 neXtProt:NX_P06454 PharmGKB:PA33966 eggNOG:NOG259527
ChiTaRS:PTMA GenomeRNAi:5757 NextBio:22406 PMAP-CutDB:P06454
ArrayExpress:P06454 Bgee:P06454 CleanEx:HS_PTMA
Genevestigator:P06454 GermOnline:ENSG00000187514 Uniprot:P06454
Length = 111
Score = 85 (35.0 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREES-EAKYTDSDEKEEYGQRVATSRRREVIES 59
M DA D +D ++ +VV++ E +A + E EE G++ A + E E
Sbjct: 1 MSDAAVDTSSEITTKDLKEKK-EVVEEAENGRDAPANGNAENEENGEQEADNEVDEEEEE 59
Query: 60 GSERSEENHYPDHEDEEVDQARSPSRSPG 88
G E EE D E+E+ D+ + G
Sbjct: 60 GGEEEEEEEEGDGEEEDGDEDEEAESATG 88
Score = 39 (18.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 513 ASDDEEEAVEPKQKARD 529
A DDE++ V+ K++ D
Sbjct: 92 AEDDEDDDVDTKKQKTD 108
>RGD|61829 [details] [associations]
symbol:Ptma "prothymosin alpha" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0030154 "cell differentiation" evidence=TAS] [GO:0043066
"negative regulation of apoptotic process" evidence=IDA] [GO:0043154
"negative regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] RGD:61829 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030154 GO:GO:0008283 GeneTree:ENSGT00410000025588
InterPro:IPR004931 PANTHER:PTHR22745 Pfam:PF03247 eggNOG:NOG44821
HOGENOM:HOG000089972 KO:K13784 CTD:5757 OrthoDB:EOG4HDSWC
EMBL:M20035 EMBL:M86564 EMBL:M33024 EMBL:X55326 EMBL:BC061972
EMBL:BC092569 IPI:IPI00393595 PIR:A32265 RefSeq:NP_068508.1
RefSeq:XP_003751326.1 RefSeq:XP_003752724.1 UniGene:Rn.217655
UniGene:Rn.817 DisProt:DP00058 STRING:P06302 PRIDE:P06302
Ensembl:ENSRNOT00000025093 Ensembl:ENSRNOT00000051368
GeneID:100359583 GeneID:29222 KEGG:rno:100359583 KEGG:rno:29222
UCSC:RGD:61829 InParanoid:P06302 NextBio:608423 ArrayExpress:P06302
Genevestigator:P06302 GermOnline:ENSRNOG00000018584 Uniprot:P06302
Length = 112
Score = 83 (34.3 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREES-EAKYTDSDEKEEYGQRVATSRRREVIES 59
M DA D +D ++ +VV++ E +A + + EE G++ A + E E
Sbjct: 1 MSDAAVDTSSEITTKDLKEKK-EVVEEAENGRDAPANGNAQNEENGEQEADNEVDEEEEE 59
Query: 60 GSERSEENHYPDHEDEEVDQARSPSRSPGGE 90
G E EE D E+E+ D+ + +P G+
Sbjct: 60 GGEEEEEEEEGDGEEEDGDEDEE-AEAPTGK 89
Score = 41 (19.5 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 513 ASDDEEEAVEPK-QKARD 529
A DDE++ VE K QK D
Sbjct: 92 AEDDEDDDVETKKQKKTD 109
>UNIPROTKB|P01252 [details] [associations]
symbol:PTMA "Prothymosin alpha" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634
GeneTree:ENSGT00410000025588 InterPro:IPR004931 PANTHER:PTHR22745
Pfam:PF03247 IPI:IPI00696627 PIR:A01520 RefSeq:XP_001253151.2
RefSeq:XP_002685643.2 RefSeq:XP_003581926.1 RefSeq:XP_003581927.1
RefSeq:XP_003585828.1 RefSeq:XP_003585829.1 UniGene:Bt.11448
PRIDE:P01252 Ensembl:ENSBTAT00000003305 GeneID:786336
KEGG:bta:786336 eggNOG:NOG44821 HOGENOM:HOG000089972
InParanoid:P01252 KO:K13784 OMA:MADTKVD Uniprot:P01252
Length = 110
Score = 84 (34.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 1 MHDAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
M DA D +D ++ +VV++ E + + EE G++ A + E E G
Sbjct: 1 MSDAAVDTSSEITTKDLKEKK-EVVEEAENGREAPANGNANEENGEQEADNEVDEEEEEG 59
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPG 88
E EE D E+E+ D+ + G
Sbjct: 60 GEEEEEEEEGDGEEEDGDEDEEAEAATG 87
Score = 39 (18.8 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 513 ASDDEEEAVEPKQKARD 529
A DDE++ V+ K++ D
Sbjct: 91 AEDDEDDDVDTKKQKTD 107
>GENEDB_PFALCIPARUM|PF13_0191 [details] [associations]
symbol:PF13_0191 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] EMBL:AL844509 InterPro:IPR024781
Pfam:PF12948 RefSeq:XP_001350074.1 ProteinModelPortal:Q8IDY5
EnsemblProtists:PF13_0191:mRNA GeneID:814161 KEGG:pfa:PF13_0191
EuPathDB:PlasmoDB:PF3D7_1334300 OMA:ANEDNVE Uniprot:Q8IDY5
Length = 459
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 32/149 (21%), Positives = 67/149 (44%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKE-EYGQRVATSRRREVIESGS 61
+ + D + E D+ +E++V + E E + TD ++KE E Q+ ++E +
Sbjct: 98 ETDEDDDEDSDEDDEEQEELNVEPKEREDEQEETDDEQKETEDEQKETEDEQKETEDEQK 157
Query: 62 ERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAI 121
E +E + E +E D + + E +D+ +S E D + D+E+ E
Sbjct: 158 ETEDEQKETEDEQKESDDEQKETEDEQKETEDEASEEYSDNEEDDEEDEEDDEEENEENN 217
Query: 122 RNDIDQDS-NRSPMEEEGSYEKSIRPEDI 149
N+ ++++ + E+ E+ I D+
Sbjct: 218 DNETNEENEDNDENEDNDENEEEIEVTDV 246
>UNIPROTKB|Q8IDY5 [details] [associations]
symbol:PF13_0191 "Uncharacterized protein" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
EMBL:AL844509 InterPro:IPR024781 Pfam:PF12948 RefSeq:XP_001350074.1
ProteinModelPortal:Q8IDY5 EnsemblProtists:PF13_0191:mRNA
GeneID:814161 KEGG:pfa:PF13_0191 EuPathDB:PlasmoDB:PF3D7_1334300
OMA:ANEDNVE Uniprot:Q8IDY5
Length = 459
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 32/149 (21%), Positives = 67/149 (44%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKE-EYGQRVATSRRREVIESGS 61
+ + D + E D+ +E++V + E E + TD ++KE E Q+ ++E +
Sbjct: 98 ETDEDDDEDSDEDDEEQEELNVEPKEREDEQEETDDEQKETEDEQKETEDEQKETEDEQK 157
Query: 62 ERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAI 121
E +E + E +E D + + E +D+ +S E D + D+E+ E
Sbjct: 158 ETEDEQKETEDEQKESDDEQKETEDEQKETEDEASEEYSDNEEDDEEDEEDDEEENEENN 217
Query: 122 RNDIDQDS-NRSPMEEEGSYEKSIRPEDI 149
N+ ++++ + E+ E+ I D+
Sbjct: 218 DNETNEENEDNDENEDNDENEEEIEVTDV 246
>ZFIN|ZDB-GENE-010328-16 [details] [associations]
symbol:baz1b "bromodomain adjacent to zinc finger
domain, 1B" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004715 "non-membrane spanning protein
tyrosine kinase activity" evidence=IEA] [GO:0004713 "protein
tyrosine kinase activity" evidence=IEA;ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA;ISS] [GO:0016572 "histone
phosphorylation" evidence=ISS] [GO:0035173 "histone kinase
activity" evidence=ISS] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016301 "kinase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001841 InterPro:IPR001487 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00439 Pfam:PF00628 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50016 PROSITE:PS50089 SMART:SM00184
SMART:SM00249 SMART:SM00297 ZFIN:ZDB-GENE-010328-16 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR018501 InterPro:IPR013136 Pfam:PF10537 PROSITE:PS50827
PROSITE:PS51136 GeneTree:ENSGT00660000095335 EMBL:BX950182
EMBL:CU326349 IPI:IPI00998609 Ensembl:ENSDART00000128582
Uniprot:E7EYG7
Length = 1802
Score = 119 (46.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 7 DPGQSEGERDQSSQEVDVV---DQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSER 63
D +SE + D+ +E D QR ++K S KE+ +R T R ++ +S SE
Sbjct: 1534 DDSESEEDEDEDDEEEDDERSRKQRNGKQSKKASSRRKEDNSRRKNTKRNKD--DSESEE 1591
Query: 64 SEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRN 123
E++ D E+EE D+ S + G ++K + + R+ + DE + E
Sbjct: 1592 EEDDDEEDEEEEEDDEG-SKKQKNGKQDKKNSSRKKGNSRQRNTKRNKDESEDDE----- 1645
Query: 124 DIDQDSNRSPMEEEGSYEK---SIRPED 148
D +++ RS ++ G K S R ED
Sbjct: 1646 DDEEEEERSKKQKNGKRSKKASSRRKED 1673
Score = 61 (26.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/56 (35%), Positives = 24/56 (42%)
Query: 511 NRASDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMP-THRRMAVVYDSDEE 565
NR D + KQ DS S + DED P RK T+R+ DSD E
Sbjct: 1713 NRRKQDNSRQKKTKQNKDDSESEE-----DDDEDEPVRKSKRTNRKDYHEQDSDSE 1763
>UNIPROTKB|F1NW81 [details] [associations]
symbol:SETD1B "Histone-lysine N-methyltransferase SETD1B"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0018024 "histone-lysine N-methyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00856
InterPro:IPR000504 InterPro:IPR001214 InterPro:IPR012677
InterPro:IPR015722 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50280
SMART:SM00317 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0018024 GO:GO:0034968
InterPro:IPR003616 SMART:SM00508 PROSITE:PS50868
GeneTree:ENSGT00700000104213 PANTHER:PTHR22884:SF10
InterPro:IPR024657 Pfam:PF11764 EMBL:AADN02034905 EMBL:AADN02034906
EMBL:AADN02034907 EMBL:AADN02034908 IPI:IPI00820656
Ensembl:ENSGALT00000006894 ArrayExpress:F1NW81 Uniprot:F1NW81
Length = 1986
Score = 132 (51.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 41/143 (28%), Positives = 65/143 (45%)
Query: 14 ERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHE 73
E D +E D +EE E+ +E+EE G V + +E E + +E+ D E
Sbjct: 985 ELDSEGEEGDETSGKEE-ESSSEKEEEQEEEGGLVKAAPGKEEEEDEDDEEDEDDDEDEE 1043
Query: 74 DEEVDQARSPSRSPGGEEKD-QTHISHSAAEIRDVFGDSDE-EDVGEYAIRNDIDQDSNR 131
DEE + S EE+D + + S + + SDE ED E+ +D D+D +
Sbjct: 1044 DEEDYEETGVETSDKEEEQDSEEEDAASPSSSKAEVESSDESEDSSEFESSSDSDEDDDE 1103
Query: 132 SPMEEEGSYEKSIRPEDIVPDED 154
EEE E+ E++ D+D
Sbjct: 1104 EEEEEEDEEEEE--EEEVAEDQD 1124
Score = 47 (21.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 511 NRASDD--EEEA-VEPKQK-ARDSGSNHKRRGIESDEDSPP----RKMPTHRRMAVVYD 561
N+ ++D EEEA +PK++ R S I S E SPP R M ++YD
Sbjct: 1642 NQWNEDFKEEEAHAKPKRQWRRQKKSPEHLPVIPSPEYSPPQPQFRPRSEFEEMTILYD 1700
>UNIPROTKB|Q5F3P8 [details] [associations]
symbol:SETD1B "Histone-lysine N-methyltransferase SETD1B"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0018024 "histone-lysine N-methyltransferase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] Pfam:PF00856 InterPro:IPR000504
InterPro:IPR001214 InterPro:IPR012677 InterPro:IPR015722
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50280 SMART:SM00317
SMART:SM00360 GO:GO:0005694 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG2940 GO:GO:0018024 GO:GO:0034968 InterPro:IPR003616
SMART:SM00508 PROSITE:PS50868 PANTHER:PTHR22884:SF10
HOGENOM:HOG000168216 HOVERGEN:HBG055596 KO:K11422 OrthoDB:EOG4933HK
InterPro:IPR024657 Pfam:PF11764 EMBL:AJ851602 IPI:IPI00595363
RefSeq:NP_001025832.1 UniGene:Gga.48952 ProteinModelPortal:Q5F3P8
STRING:Q5F3P8 GeneID:416851 KEGG:gga:416851 CTD:23067
InParanoid:Q5F3P8 NextBio:20820251 Uniprot:Q5F3P8
Length = 2008
Score = 132 (51.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 41/143 (28%), Positives = 65/143 (45%)
Query: 14 ERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHE 73
E D +E D +EE E+ +E+EE G V + +E E + +E+ D E
Sbjct: 1010 ELDSEGEEGDETSGKEE-ESSSEKEEEQEEEGGLVKAAPGKEEEEDEDDEEDEDDDEDEE 1068
Query: 74 DEEVDQARSPSRSPGGEEKD-QTHISHSAAEIRDVFGDSDE-EDVGEYAIRNDIDQDSNR 131
DEE + S EE+D + + S + + SDE ED E+ +D D+D +
Sbjct: 1069 DEEDYEETGVETSDKEEEQDSEEEDAASPSSSKAEVESSDESEDSSEFESSSDSDEDDDE 1128
Query: 132 SPMEEEGSYEKSIRPEDIVPDED 154
EEE E+ E++ D+D
Sbjct: 1129 EEEEEEDEEEEE--EEEVAEDQD 1149
Score = 47 (21.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 511 NRASDD--EEEA-VEPKQK-ARDSGSNHKRRGIESDEDSPP----RKMPTHRRMAVVYD 561
N+ ++D EEEA +PK++ R S I S E SPP R M ++YD
Sbjct: 1667 NQWNEDFKEEEAHAKPKRQWRRQKKSPEHLPVIPSPEYSPPQPQFRPRSEFEEMTILYD 1725
>UNIPROTKB|F1NKV4 [details] [associations]
symbol:SETD1B "Histone-lysine N-methyltransferase SETD1B"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042800 "histone methyltransferase activity (H3-K4 specific)"
evidence=IEA] [GO:0048188 "Set1C/COMPASS complex" evidence=IEA]
Pfam:PF00856 InterPro:IPR000504 InterPro:IPR001214
InterPro:IPR012677 InterPro:IPR015722 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50280 SMART:SM00317 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR003616 SMART:SM00508
PROSITE:PS50868 GO:GO:0042800 GO:GO:0048188
GeneTree:ENSGT00700000104213 PANTHER:PTHR22884:SF10
InterPro:IPR024657 Pfam:PF11764 IPI:IPI00595363 OMA:HHWRSYK
EMBL:AADN02034905 EMBL:AADN02034906 EMBL:AADN02034907
EMBL:AADN02034908 Ensembl:ENSGALT00000039216 ArrayExpress:F1NKV4
Uniprot:F1NKV4
Length = 2009
Score = 132 (51.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 41/143 (28%), Positives = 65/143 (45%)
Query: 14 ERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHE 73
E D +E D +EE E+ +E+EE G V + +E E + +E+ D E
Sbjct: 1011 ELDSEGEEGDETSGKEE-ESSSEKEEEQEEEGGLVKAAPGKEEEEDEDDEEDEDDDEDEE 1069
Query: 74 DEEVDQARSPSRSPGGEEKD-QTHISHSAAEIRDVFGDSDE-EDVGEYAIRNDIDQDSNR 131
DEE + S EE+D + + S + + SDE ED E+ +D D+D +
Sbjct: 1070 DEEDYEETGVETSDKEEEQDSEEEDAASPSSSKAEVESSDESEDSSEFESSSDSDEDDDE 1129
Query: 132 SPMEEEGSYEKSIRPEDIVPDED 154
EEE E+ E++ D+D
Sbjct: 1130 EEEEEEDEEEEE--EEEVAEDQD 1150
Score = 47 (21.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 511 NRASDD--EEEA-VEPKQK-ARDSGSNHKRRGIESDEDSPP----RKMPTHRRMAVVYD 561
N+ ++D EEEA +PK++ R S I S E SPP R M ++YD
Sbjct: 1668 NQWNEDFKEEEAHAKPKRQWRRQKKSPEHLPVIPSPEYSPPQPQFRPRSEFEEMTILYD 1726
>WB|WBGene00016360 [details] [associations]
symbol:C33G8.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0007067 "mitosis" evidence=IMP] GO:GO:0009792
GO:GO:0007067 GeneTree:ENSGT00690000102070 EMBL:FO080765 PIR:T34137
RefSeq:NP_504775.1 UniGene:Cel.30633 ProteinModelPortal:Q18401
EnsemblMetazoa:C33G8.2 GeneID:183174 KEGG:cel:CELE_C33G8.2
UCSC:C33G8.2 CTD:183174 WormBase:C33G8.2 eggNOG:NOG145231
InParanoid:Q18401 OMA:DDVDKDM NextBio:920178 Uniprot:Q18401
Length = 390
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 29/155 (18%), Positives = 73/155 (47%)
Query: 2 HDAEPDPGQSEGERDQSSQEVDVV-DQREESEAKYTDSDEKEEYGQRVATSRRREVIESG 60
+D + D + + ++D E D D++++ + K D D++EE ++ ++ + E
Sbjct: 215 NDKKKDKKKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEEEKDKKKKDKKKNDDDEED 274
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
++ ++ D +DE+ D + + ++ D+ + +D D D++D +
Sbjct: 275 KKKDKKKKKDDDDDEDEDNKKKDKKKKKDDKDDEDEEKEKDKKKKDKKKDDDDDD--DEK 332
Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDEDM 155
+ D + ++ E+E +K + +D+ D+DM
Sbjct: 333 EKKDKKKKDDKDDDEDEDKDDKKKKKDDV--DDDM 365
>RGD|2508 [details] [associations]
symbol:Dmp1 "dentin matrix acidic phosphoprotein 1" species:10116
"Rattus norvegicus" [GO:0001503 "ossification" evidence=IEA]
[GO:0005578 "proteinaceous extracellular matrix" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010811
"positive regulation of cell-substrate adhesion" evidence=IEA;ISO]
[GO:0030198 "extracellular matrix organization" evidence=IEA;ISO]
[GO:0030500 "regulation of bone mineralization" evidence=TAS]
[GO:0031214 "biomineral tissue development" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO] [GO:0050840
"extracellular matrix binding" evidence=IEA;ISO] InterPro:IPR009889
Pfam:PF07263 RGD:2508 GO:GO:0005634 GO:GO:0005737 GO:GO:0005578
GO:GO:0030198 GO:GO:0030500 GO:GO:0031214 GO:GO:0001503
eggNOG:NOG86154 HOGENOM:HOG000220909 HOVERGEN:HBG073257
PANTHER:PTHR23400 EMBL:L11354 IPI:IPI00776678 PIR:A45988
UniGene:Rn.19340 STRING:P98193 PhosphoSite:P98193 PRIDE:P98193
ArrayExpress:P98193 Genevestigator:P98193
GermOnline:ENSRNOG00000002167 Uniprot:P98193
Length = 489
Score = 112 (44.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 39/154 (25%), Positives = 63/154 (40%)
Query: 3 DAEPDPGQS-EGERDQSSQEVDVVDQREESEAKYTD-SDEKEEYGQRVATSRRREVIESG 60
D++ D + + D +SQE D +S+ ++D +D + E G S E G
Sbjct: 116 DSDEDSADTTQSSEDSTSQENSAQDTPSDSKDHHSDEADSRPEAGDSTQDSESEEYRVGG 175
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
E +H + E D S PG D+ H S+A IR EE G++
Sbjct: 176 GSEGESSH---GDGSEFDDEGMQSDDPGSTRSDRGHTRMSSAGIRS------EESKGDHE 226
Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDED 154
+ D D ++ + E S KS R + ++D
Sbjct: 227 PTSTQDSDDSQ---DVEFSSRKSFRRSRVSEEDD 257
Score = 50 (22.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 511 NRASDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVV 559
NR SD ++ + K+++ +GS S+ED+ P+ + R +V
Sbjct: 427 NRDSDSQDSS-RSKEESNSTGSTSS-----SEEDNHPKNIEADNRKLIV 469
>UNIPROTKB|P98193 [details] [associations]
symbol:Dmp1 "Dentin matrix acidic phosphoprotein 1"
species:10116 "Rattus norvegicus" [GO:0001503 "ossification"
evidence=IEA] InterPro:IPR009889 Pfam:PF07263 RGD:2508
GO:GO:0005634 GO:GO:0005737 GO:GO:0005578 GO:GO:0030198
GO:GO:0030500 GO:GO:0031214 GO:GO:0001503 eggNOG:NOG86154
HOGENOM:HOG000220909 HOVERGEN:HBG073257 PANTHER:PTHR23400
EMBL:L11354 IPI:IPI00776678 PIR:A45988 UniGene:Rn.19340
STRING:P98193 PhosphoSite:P98193 PRIDE:P98193 ArrayExpress:P98193
Genevestigator:P98193 GermOnline:ENSRNOG00000002167 Uniprot:P98193
Length = 489
Score = 112 (44.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 39/154 (25%), Positives = 63/154 (40%)
Query: 3 DAEPDPGQS-EGERDQSSQEVDVVDQREESEAKYTD-SDEKEEYGQRVATSRRREVIESG 60
D++ D + + D +SQE D +S+ ++D +D + E G S E G
Sbjct: 116 DSDEDSADTTQSSEDSTSQENSAQDTPSDSKDHHSDEADSRPEAGDSTQDSESEEYRVGG 175
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYA 120
E +H + E D S PG D+ H S+A IR EE G++
Sbjct: 176 GSEGESSH---GDGSEFDDEGMQSDDPGSTRSDRGHTRMSSAGIRS------EESKGDHE 226
Query: 121 IRNDIDQDSNRSPMEEEGSYEKSIRPEDIVPDED 154
+ D D ++ + E S KS R + ++D
Sbjct: 227 PTSTQDSDDSQ---DVEFSSRKSFRRSRVSEEDD 257
Score = 50 (22.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 511 NRASDDEEEAVEPKQKARDSGSNHKRRGIESDEDSPPRKMPTHRRMAVV 559
NR SD ++ + K+++ +GS S+ED+ P+ + R +V
Sbjct: 427 NRDSDSQDSS-RSKEESNSTGSTSS-----SEEDNHPKNIEADNRKLIV 469
>GENEDB_PFALCIPARUM|PF13_0355 [details] [associations]
symbol:PF13_0355 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] EMBL:AL844509 RefSeq:XP_001350389.1
ProteinModelPortal:Q8ID30 EnsemblProtists:PF13_0355:mRNA
GeneID:814314 KEGG:pfa:PF13_0355 EuPathDB:PlasmoDB:PF3D7_1367800
OMA:GTKNGIN ProtClustDB:CLSZ2500790 Uniprot:Q8ID30
Length = 1182
Score = 123 (48.4 bits), Expect = 0.00061, P = 0.00061
Identities = 40/152 (26%), Positives = 71/152 (46%)
Query: 12 EGERDQSSQEVDV---VDQREES-EAKYTDSDEKEEYGQRVATSRRREVIESGSERSEEN 67
E + D+ +++ D +D EE+ E Y DSDE E + T + E E S+E
Sbjct: 546 EIKNDEMTEDYDYSYDIDSEEENKEGTYEDSDEDSEEENKEGTYEDSD--EESDEESDEE 603
Query: 68 HYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQ 127
+ ++E +++ S EE D+ S EI + + +E+ E + ++ID+
Sbjct: 604 SDEESDEESDEESDEESDEESDEESDEESDEESDDEIDEESDEESDEECDEES-DDEIDE 662
Query: 128 DSNRSPMEEEGSYEKSIRPEDIVPDEDMHYES 159
+S+ EE S E+S D DE+ Y++
Sbjct: 663 ESDEESDEE--SDEESDEESDEEFDEENDYDN 692
>UNIPROTKB|Q8ID30 [details] [associations]
symbol:PF13_0355 "Uncharacterized protein" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
EMBL:AL844509 RefSeq:XP_001350389.1 ProteinModelPortal:Q8ID30
EnsemblProtists:PF13_0355:mRNA GeneID:814314 KEGG:pfa:PF13_0355
EuPathDB:PlasmoDB:PF3D7_1367800 OMA:GTKNGIN ProtClustDB:CLSZ2500790
Uniprot:Q8ID30
Length = 1182
Score = 123 (48.4 bits), Expect = 0.00061, P = 0.00061
Identities = 40/152 (26%), Positives = 71/152 (46%)
Query: 12 EGERDQSSQEVDV---VDQREES-EAKYTDSDEKEEYGQRVATSRRREVIESGSERSEEN 67
E + D+ +++ D +D EE+ E Y DSDE E + T + E E S+E
Sbjct: 546 EIKNDEMTEDYDYSYDIDSEEENKEGTYEDSDEDSEEENKEGTYEDSD--EESDEESDEE 603
Query: 68 HYPDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDIDQ 127
+ ++E +++ S EE D+ S EI + + +E+ E + ++ID+
Sbjct: 604 SDEESDEESDEESDEESDEESDEESDEESDEESDDEIDEESDEESDEECDEES-DDEIDE 662
Query: 128 DSNRSPMEEEGSYEKSIRPEDIVPDEDMHYES 159
+S+ EE S E+S D DE+ Y++
Sbjct: 663 ESDEESDEE--SDEESDEESDEEFDEENDYDN 692
>UNIPROTKB|I3LV13 [details] [associations]
symbol:PTMA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] GeneTree:ENSGT00410000025588 InterPro:IPR004931
PANTHER:PTHR22745 Pfam:PF03247 OMA:MADTKVD
Ensembl:ENSSSCT00000023814 Uniprot:I3LV13
Length = 96
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 20 QEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHYPDHEDEEVDQ 79
++ +VV++ E + + EE G++ A + E E G E EE D E+E+ D+
Sbjct: 5 EKKEVVEEAENGREAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDE 64
Query: 80 ARSPSRSPG 88
+ G
Sbjct: 65 DEEAEAATG 73
Score = 39 (18.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 513 ASDDEEEAVEPKQKARD 529
A DDE++ V+ K++ D
Sbjct: 77 AEDDEDDDVDTKKQKTD 93
>ZFIN|ZDB-GENE-081104-2 [details] [associations]
symbol:tpra "translocated promoter region a (to
activated MET oncogene)" species:7955 "Danio rerio" [GO:0005643
"nuclear pore" evidence=IEA] [GO:0006606 "protein import into
nucleus" evidence=IEA] InterPro:IPR012929 Pfam:PF07926
ZFIN:ZDB-GENE-081104-2 GO:GO:0005643 GO:GO:0006606
GeneTree:ENSGT00700000104019 EMBL:CU570979 EMBL:CU638698
EMBL:CU638707 EMBL:FP016011 IPI:IPI00834509
Ensembl:ENSDART00000074850 Uniprot:F1Q9Z8
Length = 1926
Score = 124 (48.7 bits), Expect = 0.00082, P = 0.00082
Identities = 40/162 (24%), Positives = 71/162 (43%)
Query: 5 EPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVAT----SRRREVIESG 60
E P EG+ + S +D V + + SE++ + D EEY V S E E
Sbjct: 1455 EAYPVLGEGDEESLSAPMDQVSESQPSESQISGQDSSEEYKHDVIVIETDSATEEEEEEE 1514
Query: 61 SERSEENHYPDHEDEEVDQARSPSRSPG----GEEKDQTHISHSAAEIRDVF-GDSDEED 115
E+ E Y D +++E D A G E ++++ +A+ + + GD E+
Sbjct: 1515 EEQEEPGQYEDDDEDEDDDAEDEDDEDGDGGMAEAAEESNEGSGSADANEAYEGDEAEQG 1574
Query: 116 VGEY--AIRNDIDQDSNRSPMEEEGSY--EKSIRPEDIVPDE 153
GE ++ N+ Q+++ S ++ S E S+ + P E
Sbjct: 1575 AGEADPSVHNEESQEASDSTQKQPDSQSSEASVSTLEAFPLE 1616
>MGI|MGI:88376 [details] [associations]
symbol:Cenpb "centromere protein B" species:10090 "Mus
musculus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR004875
InterPro:IPR007889 InterPro:IPR009057 InterPro:IPR015115
Pfam:PF03184 Pfam:PF04218 Pfam:PF09026 PROSITE:PS50960
MGI:MGI:88376 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR006600 Pfam:PF03221 SMART:SM00674 PROSITE:PS51253
CTD:1059 eggNOG:NOG241149 HOGENOM:HOG000111537 HOVERGEN:HBG050890
KO:K11496 OMA:KRRQLTF OrthoDB:EOG444KK8 EMBL:X55038 EMBL:AL831736
EMBL:BC053333 EMBL:BC071269 EMBL:BC075733 IPI:IPI00874962
RefSeq:NP_031708.2 UniGene:Mm.440169 HSSP:P07199
ProteinModelPortal:P27790 SMR:P27790 IntAct:P27790 STRING:P27790
PhosphoSite:P27790 PRIDE:P27790 Ensembl:ENSMUST00000089510
GeneID:12616 KEGG:mmu:12616 GeneTree:ENSGT00700000104343
NextBio:281782 Bgee:P27790 CleanEx:MM_CENPB Genevestigator:P27790
GermOnline:ENSMUSG00000068267 Uniprot:P27790
Length = 599
Score = 118 (46.6 bits), Expect = 0.00092, P = 0.00092
Identities = 41/147 (27%), Positives = 67/147 (45%)
Query: 10 QSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSERSEENHY 69
+SEGE ++ +E + ++ EE E + + +E+EE G+ E E G E EE
Sbjct: 402 KSEGEEEEEEEEEEEEEEEEEGEGE--EEEEEEEEGEEEGG----EGEEEGEEEVEEEGE 455
Query: 70 PDHEDEEVDQARSPSRSPGGEEKDQTHISHSAAEIRDVFGDSDEEDVGEYAIRNDID--Q 127
D DEE ++ S S G E +D + E FG ++ ++ + ++ +
Sbjct: 456 VDDSDEEEEE----SSSEGLEAEDW---AQGVVEASGGFGGYSVQEEAQFPTLHFLEGGE 508
Query: 128 DSNRSPMEEEGSYEKSIRPEDIVPDED 154
DS+ EEE E+ ED DED
Sbjct: 509 DSDSDSDEEEDDEEEDEEDEDEEDDED 535
>ZFIN|ZDB-GENE-050506-101 [details] [associations]
symbol:paf1 "paf1, RNA polymerase II associated
factor, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007507 "heart
development" evidence=IMP] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] ZFIN:ZDB-GENE-050506-101 GO:GO:0007507 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0032968 GO:GO:0016593
GO:GO:0000993 CTD:54623 HOGENOM:HOG000115425 HOVERGEN:HBG053131
KO:K15174 OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:DQ022213 EMBL:BC139613 IPI:IPI00611430
RefSeq:NP_001019624.1 UniGene:Dr.70839 IntAct:Q4U0S5 STRING:Q4U0S5
PRIDE:Q4U0S5 GeneID:553020 KEGG:dre:553020 eggNOG:NOG245460
InParanoid:Q4U0S5 NextBio:20879918 Uniprot:Q4U0S5
Length = 503
Score = 117 (46.2 bits), Expect = 0.00092, P = 0.00092
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 3 DAEPDPGQSEGERDQSSQEVDVVDQREESEAKYTDSDEKEEYGQRVATSRRREVIESGSE 62
D + D G+ E E+ S+ + +REE E + D DE+EE + + RRRE SGSE
Sbjct: 388 DMQEDSGE-EREKPSDSENSESESEREEEE-RPADEDEEEEEDEE-SVKRRRERKSSGSE 444
Query: 63 RSEENHYPDHE-----DEEVDQARSPSRSPGGEEK-DQTHISHSAAEIRDVFGDSDEED 115
++ D E D++ ++ G + + + + HSA+E D+ + D
Sbjct: 445 SGDDRQARDEEEIFGSDDDSEEEEEEEEEGGARRRSNSSSVQHSASERASDSSDASDSD 503
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.309 0.128 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 565 461 0.00096 118 3 11 23 0.37 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 604 (64 KB)
Total size of DFA: 263 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.83u 0.12s 45.95t Elapsed: 00:00:02
Total cpu time: 45.84u 0.12s 45.96t Elapsed: 00:00:02
Start: Thu May 9 16:35:54 2013 End: Thu May 9 16:35:56 2013