BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008447
         (565 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
 pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
 pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
           Different Bound Ligands
 pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
           Different Bound Ligands
          Length = 464

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 5/31 (16%)

Query: 311 IPSSLSSNSHRLLTALVDSRHKKVYKVKNCI 341
           IPSSL     R+L A++DS HKK+ K++N I
Sbjct: 166 IPSSL-----RVLRAVIDSLHKKIQKLENAI 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.128    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,084,809
Number of Sequences: 62578
Number of extensions: 518176
Number of successful extensions: 677
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 9
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)