Query 008447
Match_columns 565
No_of_seqs 148 out of 183
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eo9_A Roundabout homolog 1; b 17.5 1E+02 0.0035 24.6 3.5 29 236-268 38-66 (118)
2 2edj_A Roundabout homolog 2; K 17.2 1E+02 0.0036 23.6 3.4 29 236-268 38-66 (100)
3 3ukx_C Bimax2 peptide; arm rep 13.6 1.1E+02 0.0038 20.8 2.2 19 532-550 6-24 (28)
4 2ptt_B Natural killer cell rec 13.5 4.9E+02 0.017 23.2 6.9 25 237-266 33-57 (112)
5 3hk4_A MLR7391 protein; NTF2-l 13.0 1.4E+02 0.0048 26.0 3.4 32 236-267 97-130 (136)
6 2lvc_A Obscurin-like protein 1 12.9 1.2E+02 0.0043 24.0 2.8 32 236-271 35-66 (91)
7 2bk8_A Connectin, M1, titin he 12.8 1.4E+02 0.0047 22.9 3.0 32 236-271 32-63 (97)
8 2kdg_A Myotilin; immonoglobuli 12.8 1.7E+02 0.0058 22.2 3.5 32 236-271 35-67 (100)
9 3rbs_A Myomesin-1; immunoglobu 11.4 1.7E+02 0.0058 26.2 3.5 30 237-270 34-65 (207)
10 2xk0_A Polycomb protein PCL; t 11.4 95 0.0032 25.6 1.6 11 258-268 23-33 (69)
No 1
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.47 E-value=1e+02 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=20.0
Q ss_pred ceEEEeeecCCCCCceecccccEEEeCCCceee
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFVRWSDGSLQL 268 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL 268 (565)
.+|.|.+. |..+...+.++.-..+|+|+|
T Consensus 38 p~i~W~k~----g~~~~~~~~~~~~~~~~~L~i 66 (118)
T 2eo9_A 38 PTILWRKD----GVLVSTQDSRIKQLENGVLQI 66 (118)
T ss_dssp CEEEEEES----SSBCCTTSTTEEEEETTEEEE
T ss_pred CEEEEEEC----CEECcCCCCeEEEccCCEEEE
Confidence 47999874 555555677777777885544
No 2
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.23 E-value=1e+02 Score=23.61 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=19.2
Q ss_pred ceEEEeeecCCCCCceecccccEEEeCCCceee
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFVRWSDGSLQL 268 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL 268 (565)
.+|.|.+. |..+..++.++.-..+|+|+|
T Consensus 38 p~v~W~~~----~~~~~~~~~~~~~~~~~~L~i 66 (100)
T 2edj_A 38 PVISWLKE----GFTFPGRDPRATIQEQGTLQI 66 (100)
T ss_dssp CEEEEEES----SSEESSSCSSCEECTTCCEEE
T ss_pred CEEEEEEC----CEECCCCCCCEEEcCCCEEEE
Confidence 46999874 455555667776667775544
No 3
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=13.57 E-value=1.1e+02 Score=20.77 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=11.8
Q ss_pred CcccccCCCCCCCCCCCCC
Q 008447 532 SNHKRRGIESDEDSPPRKM 550 (565)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~ 550 (565)
..+|||.-=.|++.||.|.
T Consensus 6 rrrkrkrewdddddppkkr 24 (28)
T 3ukx_C 6 RRRKRKREWDDDDDPPKKR 24 (28)
T ss_dssp CCCCCCCCCCCSSSCCSCC
T ss_pred HHHHhhcccccCCCchhhh
Confidence 3456665556667777664
No 4
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A 1z2k_A
Probab=13.50 E-value=4.9e+02 Score=23.18 Aligned_cols=25 Identities=12% Similarity=0.473 Sum_probs=16.8
Q ss_pred eEEEeeecCCCCCceecccccEEEeCCCce
Q 008447 237 IVRWRTVKNKDGMTSYESNARFVRWSDGSL 266 (565)
Q Consensus 237 TIRWR~~~d~dG~~~kESNARIVRWSDGSl 266 (565)
.|-|.|.... ...+.+||.|.-|+-
T Consensus 33 sv~Wk~~~~t-----~~q~~kIl~W~~~~~ 57 (112)
T 2ptt_B 33 SVQWKKTEQG-----SHRKIEILNWYNDGP 57 (112)
T ss_dssp EEEEEEECTT-----SSCEEEEEEESSSSC
T ss_pred eEEEEeecCC-----CCcceEEEEEeCCCc
Confidence 6889985211 123339999999984
No 5
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=13.04 E-value=1.4e+02 Score=26.02 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=24.5
Q ss_pred ceEEEeee--cCCCCCceecccccEEEeCCCcee
Q 008447 236 NIVRWRTV--KNKDGMTSYESNARFVRWSDGSLQ 267 (565)
Q Consensus 236 NTIRWR~~--~d~dG~~~kESNARIVRWSDGSlS 267 (565)
-+++|.+. ..++|..+.-+-.-|++|.||-+.
T Consensus 97 v~v~~~~~gth~~tG~~i~~~~i~v~rv~DGkIv 130 (136)
T 3hk4_A 97 FALRFKFDVTPKATGERVTMDEVGLYTVKNGKIT 130 (136)
T ss_dssp EEEEEEEEEEETTTCCCEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEEEECCCCcEEEEEEEEEEEEECCEEE
Confidence 46788764 234688888999999999999553
No 6
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=12.90 E-value=1.2e+02 Score=24.04 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=17.3
Q ss_pred ceEEEeeecCCCCCceecccccEEEeCCCceeeeec
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIG 271 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~IG 271 (565)
.+|.|.+. |..+..++-..+.-..|..+|.|-
T Consensus 35 ~~v~W~k~----g~~i~~~~~~~i~~~~~~~~L~I~ 66 (91)
T 2lvc_A 35 APVRWYKD----GQEVEESDFVVLENEGPHRRLVLP 66 (91)
T ss_dssp SCCEEEET----TSCCCCCSSCEEEEETTEEEEEES
T ss_pred cEEEEEEC----CEEeeeeeeeeEEecCCeEEEEeC
Confidence 46899864 565554443334444444466653
No 7
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=12.83 E-value=1.4e+02 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=18.4
Q ss_pred ceEEEeeecCCCCCceecccccEEEeCCCceeeeec
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQIG 271 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~IG 271 (565)
.+|.|.+. |..+..+.-..+...+|..+|.|=
T Consensus 32 ~~v~W~~~----~~~~~~~~~~~~~~~~~~~~L~i~ 63 (97)
T 2bk8_A 32 TQVTWYFG----VRQLENSEKYEITYEDGVAILYVK 63 (97)
T ss_dssp CEEEEEET----TEECCSSSSEEEEEETTEEEEEEC
T ss_pred CEEEEEEC----CEECcCCCCEEEEEcCCeEEEEEe
Confidence 47899874 344444433344567776666653
No 8
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=12.77 E-value=1.7e+02 Score=22.21 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=20.3
Q ss_pred ceEEEeeecCCCCCceeccc-ccEEEeCCCceeeeec
Q 008447 236 NIVRWRTVKNKDGMTSYESN-ARFVRWSDGSLQLQIG 271 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESN-ARIVRWSDGSlSL~IG 271 (565)
.+|.|.+. |..+..++ .+++...+|..+|.|-
T Consensus 35 p~v~W~~~----g~~~~~~~~~~~~~~~~~~~~L~i~ 67 (100)
T 2kdg_A 35 PDVSWYLN----GRTVQSDDLHKMIVSEKGLHSLIFE 67 (100)
T ss_dssp CEEEEEET----TEEECCCSSSCEEEETTTEEEEEES
T ss_pred CEEEEEEC----CEECcCCCcEEEEEcCCCeEEEEEC
Confidence 57999874 44444433 4667777887777654
No 9
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=11.41 E-value=1.7e+02 Score=26.25 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred eEEEeeecCCCCCceecccccEEEeCC--Cceeeee
Q 008447 237 IVRWRTVKNKDGMTSYESNARFVRWSD--GSLQLQI 270 (565)
Q Consensus 237 TIRWR~~~d~dG~~~kESNARIVRWSD--GSlSL~I 270 (565)
+|+|.++ |..+..+.-..+..+. |.++|.|
T Consensus 34 ~i~W~kn----g~~l~~~~~~~~~~~~~~g~~~L~I 65 (207)
T 3rbs_A 34 KVNYIFN----EKEIFEGPKYKMHIDRNTGIIEMFM 65 (207)
T ss_dssp EEEEEET----TEEECSSSSCEEEECTTTCEEEEEE
T ss_pred EEEEEEC----CEECccCCCEEEEEeCCCCEEEEEE
No 10
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=11.36 E-value=95 Score=25.62 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=0.0
Q ss_pred EEEeCCCceee
Q 008447 258 FVRWSDGSLQL 268 (565)
Q Consensus 258 IVRWSDGSlSL 268 (565)
++||+||-+=|
T Consensus 23 L~rw~DG~fYL 33 (69)
T 2xk0_A 23 FIKCNDGRFYL 33 (69)
T ss_dssp EEECTTSCEEE
T ss_pred EEEecCCCEEE
Done!