Query 008447
Match_columns 565
No_of_seqs 148 out of 183
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 03:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008447.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008447hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1koaa1 b.1.1.4 (A:6265-6361) 22.5 17 0.0013 27.1 1.9 32 235-270 30-61 (97)
2 d1gska2 b.6.1.3 (A:183-356) Sp 16.0 46 0.0033 28.6 3.4 30 235-273 65-97 (174)
3 d2a7ya1 b.34.6.3 (A:1-80) Hypo 14.1 36 0.0026 26.8 1.8 15 257-271 37-52 (80)
4 d1g1ca_ b.1.1.4 (A:) Titin {Hu 13.5 1.7E+02 0.012 21.2 5.8 31 236-271 34-66 (98)
5 d1wiua_ b.1.1.4 (A:) Twitchin 13.1 69 0.005 23.3 3.3 30 236-269 32-61 (93)
6 d1f3ua_ b.65.1.1 (A:) TFIIF be 12.4 1.1E+02 0.0078 24.9 4.5 39 275-313 80-118 (118)
7 d1pd6a_ b.1.1.4 (A:) Cardiac m 10.5 61 0.0044 23.9 2.2 33 235-271 34-67 (94)
8 d1x5ia1 b.1.2.1 (A:8-120) Neog 10.1 1.8E+02 0.013 21.5 5.0 7 258-264 54-60 (113)
9 d1fhga_ b.1.1.4 (A:) Telokin { 10.0 1.1E+02 0.0077 22.6 3.5 32 236-272 38-71 (102)
10 d3ec9a1 d.17.4.10 (A:10-139) U 9.7 1.1E+02 0.0077 23.0 3.4 29 239-267 85-113 (130)
No 1
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=22.53 E-value=17 Score=27.12 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=20.0
Q ss_pred cceEEEeeecCCCCCceecccccEEEeCCCceeeee
Q 008447 235 NNIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQI 270 (565)
Q Consensus 235 eNTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~I 270 (565)
..+|.|.+. |..+..++-..+....|..+|.|
T Consensus 30 ~p~v~W~~~----~~~l~~~~~~~~~~~~~~~~L~I 61 (97)
T d1koaa1 30 PPVVTWHKD----DRELKQSVKYMKRYNGNDYGLTI 61 (97)
T ss_dssp CCEEEEEET----TEECCSBTTBBCCCSTTEEEEEE
T ss_pred CCEEEEEEe----eeccceeeEEEEEecCCeeEEEe
Confidence 357999874 55565555455555666666665
No 2
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
Probab=15.98 E-value=46 Score=28.60 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred cceEEEeeecCCCCCceecccccE--EEeCCC-ceeeeeccc
Q 008447 235 NNIVRWRTVKNKDGMTSYESNARF--VRWSDG-SLQLQIGNE 273 (565)
Q Consensus 235 eNTIRWR~~~d~dG~~~kESNARI--VRWSDG-SlSL~IGnE 273 (565)
..++|||..+. ||+++ +.|+|| +|++ ||.+
T Consensus 65 ~~~~RlRliNa--------~~~~~~~l~~~~g~~~~v-Ia~D 97 (174)
T d1gska2 65 PRKYRFRVINA--------SNTRTYNLSLDNGGDFIQ-IGSD 97 (174)
T ss_dssp SSEEEEEEEEC--------CSSCCEEEEETTCCCEEE-EEET
T ss_pred CceEEEEEEec--------ccCceeeEeecCCCcEEE-EEEC
Confidence 34799999853 55655 569998 5664 5544
No 3
>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.09 E-value=36 Score=26.84 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.0
Q ss_pred cEEEe-CCCceeeeec
Q 008447 257 RFVRW-SDGSLQLQIG 271 (565)
Q Consensus 257 RIVRW-SDGSlSL~IG 271 (565)
-+||| .||-.+|..=
T Consensus 37 Y~VRw~ddGHe~lv~P 52 (80)
T d2a7ya1 37 YVVRWLVNGHETTVYP 52 (80)
T ss_dssp EEEEETTTTEEEEECC
T ss_pred EEEEeCCCCcEEEEec
Confidence 47999 7998888653
No 4
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}
Probab=13.52 E-value=1.7e+02 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=17.9
Q ss_pred ceEEEeeecCCCCCceecccccEEEe--CCCceeeeec
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFVRW--SDGSLQLQIG 271 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIVRW--SDGSlSL~IG 271 (565)
.+|.|.++ |..+ ..|.++... .+|..+|.|-
T Consensus 34 p~v~W~k~----~~~i-~~~~~~~~~~~~~~~~~L~I~ 66 (98)
T d1g1ca_ 34 PECEWYKN----GVKI-ERSDRIYWYWPEDNVCELVIR 66 (98)
T ss_dssp CEEEEEET----TEEC-CCCSSEEEEEEETTEEEEEEC
T ss_pred CeEEEEeC----ceEE-eeeeeeEEEeccceEEEEEec
Confidence 57999653 4444 444454433 4666777663
No 5
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=13.12 E-value=69 Score=23.29 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=16.9
Q ss_pred ceEEEeeecCCCCCceecccccEEEeCCCceeee
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFVRWSDGSLQLQ 269 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIVRWSDGSlSL~ 269 (565)
.+|.|.+. |..+..+.-..+..+++..+|.
T Consensus 32 p~v~W~~~----~~~i~~~~~~~~~~~~~~~~L~ 61 (93)
T d1wiua_ 32 PTATWTVG----DSGAALAPELLVDAKSSTTSIF 61 (93)
T ss_dssp CEEEEECS----SSSCBCSTTSEEEEETTEEEEE
T ss_pred CeEEEEee----eeeceeeeeeeecccccceeec
Confidence 57999974 4444444444445555555554
No 6
>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.37 E-value=1.1e+02 Score=24.90 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=28.6
Q ss_pred eeeeccccccCCceEEEeccCceeEEeeeecceEEeecC
Q 008447 275 LDITVQDAQHDQAHLFLRHGKGILQSQGRILKKMRFIPS 313 (565)
Q Consensus 275 FDI~~k~l~~~d~hLyvrh~~~vLQ~qg~It~kLtfrPt 313 (565)
|++..+.....+.|+|.-+.++-|-..|.|..++-.||+
T Consensus 80 y~l~~~~~~~q~~~VFSe~~~~k~~~EG~V~~k~d~RPa 118 (118)
T d1f3ua_ 80 HPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 118 (118)
T ss_dssp EEEEEECCTTSEEEEEEEETTCCEEEEEEEEEEEEECCC
T ss_pred hcEecccccCCceEEEEecCCCcEEEEEEEEEEeecCCC
Confidence 555444444456778877767777789999999999996
No 7
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.54 E-value=61 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=20.6
Q ss_pred cceEEEeeecCCCCCceecccccEEEeCCC-ceeeeec
Q 008447 235 NNIVRWRTVKNKDGMTSYESNARFVRWSDG-SLQLQIG 271 (565)
Q Consensus 235 eNTIRWR~~~d~dG~~~kESNARIVRWSDG-SlSL~IG 271 (565)
..+|.|-+. |..+..|+.++.-+.+| ..+|.|-
T Consensus 34 ~~~v~W~k~----g~~i~~~~~~~~~~~~~~~~~L~I~ 67 (94)
T d1pd6a_ 34 DAEVKWLKN----GQEIQMSGSKYIFESIGAKRTLTIS 67 (94)
T ss_dssp SSCCEEEES----SSEECCCSSSSEEEEETTEEEEEEC
T ss_pred CceEEEEEc----CccceeeeeeEeeeccCCeEEeecC
Confidence 356889764 67777777666555554 4556554
No 8
>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.08 E-value=1.8e+02 Score=21.48 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=3.8
Q ss_pred EEEeCCC
Q 008447 258 FVRWSDG 264 (565)
Q Consensus 258 IVRWSDG 264 (565)
+|+|..+
T Consensus 54 ~i~~~~~ 60 (113)
T d1x5ia1 54 AIGYGIG 60 (113)
T ss_dssp EEEECSS
T ss_pred EEEeeec
Confidence 5566544
No 9
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}
Probab=9.96 E-value=1.1e+02 Score=22.57 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=17.1
Q ss_pred ceEEEeeecCCCCCceecccccEE-Ee-CCCceeeeecc
Q 008447 236 NIVRWRTVKNKDGMTSYESNARFV-RW-SDGSLQLQIGN 272 (565)
Q Consensus 236 NTIRWR~~~d~dG~~~kESNARIV-RW-SDGSlSL~IGn 272 (565)
-+|.|.+. |..+. ++.++. .. .+|..+|.|-+
T Consensus 38 p~v~W~k~----~~~i~-~~~~~~~~~~~~~~~~L~I~~ 71 (102)
T d1fhga_ 38 PEVMWFKD----DNPVK-ESRHFQIDYDEEGNCSLTISE 71 (102)
T ss_dssp CEEEEEET----TEECC-CSSSEEEEECTTCEEEEEESS
T ss_pred CeEEEEee----ecccc-ceeeEeEEEecCceeeeEecC
Confidence 47999874 44433 344333 23 34566666543
No 10
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=9.67 E-value=1.1e+02 Score=23.02 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred EEeeecCCCCCceecccccEEEeCCCcee
Q 008447 239 RWRTVKNKDGMTSYESNARFVRWSDGSLQ 267 (565)
Q Consensus 239 RWR~~~d~dG~~~kESNARIVRWSDGSlS 267 (565)
+|+....++|..+.-..+.+++|.||-++
T Consensus 85 ~~~~~~~~tG~~~~~~~~~~~~~~dGkI~ 113 (130)
T d3ec9a1 85 RYSGTYRRTGKSFECRVAHVWRVDAGKIV 113 (130)
T ss_dssp EEEEEETTTCCEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCEEEEEEEEEEEEECCEEE
Confidence 34433346788888888999999999655
Done!